<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 13:18:59"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09HBa0026I24-W9iz2/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C09HBa0026I24-W9iz2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026I24-W9iz2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U346912" ref_strand="+" ref_description="SGN-U346912        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>atttacacataacaatctgttcccacacacatttacaactcttaccttttggtccgcagttgatgtggttgctcctctactcgtactgttgtgaatcatgcagaaatcgttcgctcaaaatctcgtaaaactatcatcactaccactaattcttgttctcatcttctgttgtttggttatgatggtttcagctagaggtaactcttttgatactagtttagttgcaaagctatatttaaactccgtctatttcagtttgtttgtttgattttgacttggacgaggtttagagtagtaaaaagaatacttttaaatcttctgcatctttaactaaaagataagtaaaatgtatcaaatagagttgtcgtttagttttagatatcctttggtaattcatttgtaaagacattattcaggctctcatgtgactaatcctggtgttgagtctgatgacgatgctatgaagcaagacgaaacatcattgaggaaacgattagagccattgcatcgcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-W9iz2/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="+" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="27977" stop="29089"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28277" g_stop="28789" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="513" r_length="513" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="+" ref_id="SGN-U346912" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U346912" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28277" e_stop="28789"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTACACATAACAATCTGTTCCCACACACATTTACAACTCTTACCTTTTGGTCCGCAGTTGATGTGGTTGCTCCTCTACTCGTACTGTTGTGAATCATGCAGAAATCGTTCGCTCAAAATCTCGTAAAACTATCATCACTACCACTAATTCTTGTTCTCATCTTCTGTTGTTTGGTTATGATGGTTTCAGCTAGAGGTAACTCTTTTGATACTAGTTTAGTTGCAAAGCTATATTTAAACTCCGTCTATTTCAGTTTGTTTGTTTGATTTTGACTTGGACGAGGTTTAGAGTAGTAAAAAGAATACTTTTAAATCTTCTGCATCTTTAACTAAAAGATAAGTAAAATGTATCAAATAGAGTTGTCGTTTAGTTTTAGATATCCTTTGGTAATTCATTTGTAAAGACATTATTCAGGCTCTCATGTGACTAATCCTGGTGTTGAGTCTGATGACGATGCTATGAAGCAAGACGAAACATCATTGAGGAAACGATTAGAGCCATTGCATCGCGA</genome_strand>
        <mrna_strand>ATTTACACATAACAATCTGTTCCCACACACATTTACAACTCTTACCTTTTGGTCCGCAGTTGATGTGGTTGCTCCTCTACTCGTACTGTTGTGAATCATGCAGAAATCGTTCGCTCAAAATCTCGTAAAACTATCATCACTACCACTAATTCTTGTTCTCATCTTCTGTTGTTTGGTTATGATGGTTTCAGCTAGAGGTAACTCTTTTGATACTAGTTTAGTTGCAAAGCTATATTTAAACTCCGTCTATTTCAGTTTGTTTGTTTGATTTTGACTTGGACGAGGTTTAGAGTAGTAAAAAGAATACTTTTAAATCTTCTGCATCTTTAACTAAAAGATAAGTAAAATGTATCAAATAGAGTTGTCGTTTAGTTTTAGATATCCTTTGGTAATTCATTTGTAAAGACATTATTCAGGCTCTCATGTGACTAATCCTGGTGTTGAGTCTGATGACGATGCTATGAAGCAAGACGAAACATCATTGAGGAAACGATTAGAGCCATTGCATCGCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026I24-W9iz2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U343068" ref_strand="+" ref_description="SGN-U343068        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, contains Pfam domain, PF04884: Protein of unknown function, DUF647 | chr5:201605-205380 FORWARD | Aliases: F7A7.30, F7A7_30(evalue: 3e-45, score=152) genbank/nr: gi|42567566|ref|NP_195771.2| expressed protein [Arabidopsis thaliana] (evalue: 2e-43, score=152)">
      <seq>taattattgatattataattatttgagtgaaaggtaaaataaccgggatacttcaggtgtgtttttgacctttcactctctcaattcttttgtttgatcattttacggatttctccttgtaacatttccggataacctaatattgatgacaggaggaagtctgggaagtagcagctgagctgctaggtctttctctcggcatactagctttggatacacctggtatctcaaagtcttatcctacattggcattaacatggttaagtgtgcggatcctacatctttggtttcgctatcagtctctttcagttctgcaattcaacacgataaatctcaaacgggctcgcatattagtgaactctcatgttttacactgtacagtcccaggaatcaatgaatgcaataggatggagagcatcttattgtgggaaagattcttaaggccacgaattatttttgagatatctttggaggagatgatcaatgcgggcaaatacagatccaagcaaatcaagaaactcattcatatgtacaaggaggaaaactattttcttgtagtaaatgaacagaaggcagcggattttcagggtctttgtatctttcaaggaaggagcctcaagcctatccgttttttcgagtatatggcaaacctattggctatatcaaaactgggggctggtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-W9iz2/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="36834" stop="34752"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36534" g_stop="36323" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36322" i_stop="36173" i_length="150">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36172" g_stop="36059" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="326" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36058" i_stop="35677" i_length="382">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35676" g_stop="35616" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="387" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35615" i_stop="35541" i_length="75">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.150" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35540" g_stop="35420" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="506" r_length="119" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="35419" i_stop="35305" i_length="115">
            <donor d_prob="0.900" d_score="0.96"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="35304" g_stop="35206" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="606" r_length="100" r_score="0.980"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="35205" i_stop="35126" i_length="80">
            <donor d_prob="0.985" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="35125" g_stop="35052" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="607" r_stop="681" r_length="75" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-U343068" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U343068" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36534" e_stop="36323"/>
          <exon e_start="36172" e_stop="36059"/>
          <exon e_start="35676" e_stop="35616"/>
          <exon e_start="35540" e_stop="35420"/>
          <exon e_start="35304" e_stop="35206"/>
          <exon e_start="35125" e_stop="35052"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTATTGATATTATAATTATTTGAGTGAAAGGTAAAATAACCGGGATACTTCAGGTGTGTTTTTGACCTTTCACTCTCTCAATTCTTTTGTTTGATCATTTTACGGATTTCTCCTTGTAACATTTCCGGATAACCTAATATTGATGACAGGAGGAAGTCTGGGAAGTAGCAGCTGAGCTGCTAGGTCTTTCTCTCGGCATACTAGCTTTGGTATGACATATATTTATTTATATGGTTTCAATCTACGTCTGTCACATCAAATGATAACTTTCTAAGGGTCCTCGACCAATATAATTAATCCTCATCTTTTCCATAATAACATATGTATATCTTACTTTTTCTTCTGAAAATATACCGCAGGATACACCTGGTATCTCAAAGTCTTATCCTACATTGGCATTAACATGGTTAAGTGTGCGGATCCTACATCTTTGGTTTCGCTATCAGTCTCTTTCAGTTCTGCAATTCAACACGGTGAGACTTTATTCTTAGTTATCAGTATATACCGAATAGCCATTTTGACTTGCCACAAAATGTTTTTGGCACTACTATCAAGTAATATTTAAAATTCTTGAACACTTTGCCTTCTCTTCATCATCTTTTTTTTTTCTCGACCCTGGTCCCTGAGCATAAGTTAATAGCAAGAGATAAATCATCTATCTAATAGACCAGAACAGGGGTCCCCATTGTCTGATATATTGGTTCTCTCAGATTTGTGAAAGTTTTTCCTTCTTCAGATATAGGAAACAGCTAAGCGAGGACAAAAAACGATAACGAAACAAGGATTTTGAATTAAGCAACAATCTTCTGAATTTTCCTTGGCTTGTTGAATTCTGGTTACTGTGCTTTTGTGCAGATAAATCTCAAACGGGCTCGCATATTAGTGAACTCTCATGTTTTACACTGTACAGTCCCAGGTAAAATCAGTCTTGCTTTCTCTGAAATCTTCAACTCTATAGGGTAAGTCAGGCCTGTTACTCCATGTGGACCAGGAATCAATGAATGCAATAGGATGGAGAGCATCTTATTGTGGGAAAGATTCTTAAGGCCACGAATTATTTTTGAGATATCTTTGGAGGAGATGATCAATGCGGGCAAATACAGATCCAAGGTGTAGCCTTCTTTGTCCCAAACGAAATCAGAGAACTTTTGGATTCGTACAACGATTTAAAGAAATCATAATTGTGACTGTATTCTTGAAAGGTGATGTTTGATTCATTCTTTGCAGCAAATCAAGAAACTCATTCATATGTACAAGGAGGAAAACTATTTTCTTGTAGTAAATGAACAGAAGGCAGCGGATTTTCA-GGTCTTTGTATCTTTCAAGGTATGCACTAATTATAATCTAGTTAAGACAGAACTCTCACTTCACTGGCAATGCTTACGTCTCTTCTCACTTCCCCGCAGGAAGGAGCCTCAAGCCTATCCGTTTTTCGAAGTATATGGCAAACCTATTGGCTATATCAAAACT-GGGGCTGGTC</genome_strand>
        <mrna_strand>TAATTATTGATATTATAATTATTTGAGTGAAAGGTAAAATAACCGGGATACTTCAGGTGTGTTTTTGACCTTTCACTCTCTCAATTCTTTTGTTTGATCATTTTACGGATTTCTCCTTGTAACATTTCCGGATAACCTAATATTGATGACAGGAGGAAGTCTGGGAAGTAGCAGCTGAGCTGCTAGGTCTTTCTCTCGGCATACTAGCTTTG......................................................................................................................................................GATACACCTGGTATCTCAAAGTCTTATCCTACATTGGCATTAACATGGTTAAGTGTGCGGATCCTACATCTTTGGTTTCGCTATCAGTCTCTTTCAGTTCTGCAATTCAACACG..............................................................................................................................................................................................................................................................................................................................................................................................ATAAATCTCAAACGGGCTCGCATATTAGTGAACTCTCATGTTTTACACTGTACAGTCCCAG...........................................................................GAATCAATGAATGCAATAGGATGGAGAGCATCTTATTGTGGGAAAGATTCTTAAGGCCACGAATTATTTTTGAGATATCTTTGGAGGAGATGATCAATGCGGGCAAATACAGATCCAA-G-...................................................................................................................CAAATCAAGAAACTCATTCATATGTACAAGGAGGAAAACTATTTTCTTGTAGTAAATGAACAGAAGGCAGCGGATTTTCAGGGTCTTTGTATCTTTCAAG................................................................................GAAGGAGCCTCAAGCCTATCCGTTTTTTCGAGTATATGGCAAACCTATTGGCTATATCAAAACTGGGGGCTGGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026I24-W9iz2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U319777" ref_strand="+" ref_description="SGN-U319777        Tomato 200607 #1 [13 ESTs aligned] arabidopsis/peptide: AT5G01500.1 | Symbol: None | mitochondrial substrate carrier family protein, contains Pfam profile: PF00153 mitochondrial carrier protein | chr5:198948-201551 FORWARD | Aliases: F7A7.20, F7A7_20 (evalue: 6e-136, score=481) genbank/nr: gi|15240999|ref|NP_195770.1| mitochondrial carrier protein family [Arabidopsis thaliana] gi|11357828|pir||T48171 hypothetical protein F7A7.20 - Arabidopsis thaliana gi|7327809|emb|CAB82266.1| putative protein [Arabidopsis thaliana] gi|18377839|gb|AAL67106.1| AT5g01500/F7A7_20 [Arabidopsis thaliana] gi|30102452|gb|AAP21144.1| At5g01500/F7A7_20 [Arabidopsis thaliana](evalue: 5e-134, score=481)">
      <seq>aaaccccttatcttgttgacaacagaggaagaaaaagcttcattcctctgtatctaccatgaggaagaaccgacccgttttggtatccatggacattccggctcttgaattgtccaacaccagtattcaatcttacccatcacaacaatggaagaacaaatttgtcggttctgctagtttttctaaagaaattgggtgtaattttggttgtatttcgttatcggagaatttggatgaaaaagcctttaaagggtttcatcctacaacaactcagcttttaaagcaccctttggctatggttgctttgattcccagagaagctgcattgtttgctgcaggtgctattgctggtgccgctgcaaaatctgttactgcacctcttgaccgtatcaagctcctcatgcagacacatggactaagagctgggcaagaagctgcaaagaaaggaatcggattcattgaggcatttgcattgattgggaaggaggaaggtatcaaaggatattggaaaggaaaccttccacaggtgatacggatcataccttatagtgcggtgcagttatttgcttatgaaacgtacaagaaactttttcaaggaaaggatggggagctttctgtcattggaagactagcagcaggtgcttgtgctggcatgacttctacttttgtaacctacccactcgatgttctcaggttgagattagcagtagaccctggatataaaatgatgagtgaggttgctttaaacatgctgaaagaggaaggctttgcatccttttataatggtctcgggccctcgctcattggaatagctccatatattgctgtgaacttttgtgtttttgacttggtgaaaaaagctttgccagaaaagtatcagaaacgaactgaagccactctggctacaggtttgatttcagcaactattgccactctattgtgctatccattggacacagtgagaaggcaaatgcaaatgaagggtacaccttatatgacaatttttgatgccttcccaggtataatggcccgtgatggtatagttggactttacaggggttttgttcccaatgcactgaaaactctccctaatagcagcattaggcttactacttttgacaccgtgaagcgtttgctagcaagaagtgaggaagagttccagaaaattatagaggaaaaccgcaggcaaaaggcagaataattcccaagtagatctgattcaatggagataattgatctcgtcattttgaagcattggttcgacgagcaagaaacttagcttccagtactatatagtatattacctagagcttcattttgtaaaaccaggtttagttgccagaatagttaggttggcttccttgtgacaacaaatatctctgttatttttagagctcatttgaatgtataataattacttcattcatttctgtatttgaagcaatttgcagtctcctttaaatccttcttttattttcacattgtaatcaattagtcaaagttcaaacgtaagaacaaaattgatgtgagattagaggaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-W9iz2/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="49107" stop="42402"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48807" g_stop="48402" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="406" r_length="406" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48401" i_stop="46832" i_length="1570">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46831" g_stop="46775" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="463" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46774" i_stop="46045" i_length="730">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46044" g_stop="45982" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="526" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45981" i_stop="45886" i_length="96">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45885" g_stop="45829" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="583" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45828" i_stop="45745" i_length="84">
            <donor d_prob="0.823" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45744" g_stop="45661" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="584" r_stop="667" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="45660" i_stop="45336" i_length="325">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="45335" g_stop="45267" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="668" r_stop="736" r_length="69" r_score="0.971"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="45266" i_stop="45198" i_length="69">
            <donor d_prob="0.820" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="45197" g_stop="45085" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="737" r_stop="849" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="45084" i_stop="44989" i_length="96">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="44988" g_stop="44819" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="850" r_stop="1019" r_length="170" r_score="0.994"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="44818" i_stop="43432" i_length="1387">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="43431" g_stop="43353" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1020" r_stop="1098" r_length="79" r_score="0.975"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="43352" i_stop="43129" i_length="224">
            <donor d_prob="0.846" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="43128" g_stop="42694" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="1099" r_stop="1543" r_length="445" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-U319777" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>1533</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U319777" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48807" e_stop="48402"/>
          <exon e_start="46831" e_stop="46775"/>
          <exon e_start="46044" e_stop="45982"/>
          <exon e_start="45885" e_stop="45829"/>
          <exon e_start="45744" e_stop="45661"/>
          <exon e_start="45335" e_stop="45267"/>
          <exon e_start="45197" e_stop="45085"/>
          <exon e_start="44988" e_stop="44819"/>
          <exon e_start="43431" e_stop="43353"/>
          <exon e_start="43128" e_stop="42694"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCCCTTATCTTGTTGACAACAGAGGAAGAAAAAGCTTCATTCCTCTGTATCTACCATGAGGAAGAACCGACCCGTTTTGGTATCCATGGACATTCCGGCTCTTGAATTGTCCAACACCAGTATTCAATCTTACCCATCACAACAATGGAAGAACAAATTTGTCGGTTCTGCTAGTTTTTCTAAAGAAATTGGGTGTAATTTTGGTTGTATTTCGTTATCGGAGAATTTGGATGAAAAAGCCTTTAAAGGGTTTCATCCTACAACAACTCAGCTTTTAAAGCACCCTTTGGCTATGGTTGCTTTGATTCCCAGAGAAGCTGCATTGTTTGCTGCAGGTGCTATTGCTGGTGCCGCTGCAAAATCTGTTACTGCACCTCTTGACCGTATCAAGCTCCTCATGCAGGTTCTTTTATGAAACCCCTTTATGTAATTGTACATTCATTTTCATTTGTTTTGCCCTTTTTTTTGACTTTGACGTGGGGTTTTTAGAAGGTTCAAAATTTCCGTTTTTAATCTTAAATTCTTGTGGTGGTTAAACCCCTTTGGGTGTAAAATTGAAATTAAAGAGTTTTGTTGAAATTAGAAAAGAATTTCAGACAATTTAAATGAAATGGGAGGGAGTAATGTTTTTCGGTGTTTTTATGTATCATATTGCTGCTGTTTCCTTGGATGATTGAATTTTCTTAGTTGAACTTCAGGCTTAATTTGTTGATAAGGTTTGTTTACTTCGGGATTGGAATTTTAGTCTTTTGTTTGTTCAACTGAAGAAAATATTTTCCATACAGAATCATTTTATACACTTTTTGAAGTAAATAAATGGGTCCCGATAAATCGGAGAGAATATCCCCGAGGGCTTTGATTCAAAAATAAAGAGAGTATAGCATGGGTTGTGTGGCAAGAACAAGTTTGAATCTTGGCAAGTGAAACAAGAAAAAATAGACTGGATGAAGTGACAATAGATATAGAGGATTCTTATGGATTTAATGATACTTTCTAAGTAGTAGACTGTAACAAAATGTACAAATTGAACTACAGTAACTAAGAGTGGAATGCAAAATGACATTGGAGCATATTTGGTTAGTCGACTGGATAAAATGTATGAGTTATGGCCAGATAAGTCATCCACTGATAAGAATAATGACTTAGTTGCGGCCAAGTGCGATGGTACTTCAATTCACATGAATTCTGTTTGGTATTACTGGCGTTTGCAAATGTTTGCGTTATTTTTTCATAGTTTTGAAGGATGGCTAGTTTGCTGAATTACTCTTTCAAGGCTTTATAACCTTTAAACTTCTATGATTTCTGAAATGGTAGCCAAAAAGGCCACATCCTTTGTTGGAGTACTTTCAGTCAACTTCTACACTTGCCATCTTATGCTATATTCCTGAATGTGTAGCTTAAAATCCCAAAATAGCTTATTTGTCCAGTCTTTCACGTCTCTGGAAGAGGTAGAGAATGGGCTTGCATTCAGCTGCAATGTGGTTATGCTATTGACCTGTTAACATTAAAAGGAACAATGTGCATATTACTGCAGATTTTGCTGTACTATGAGGAGGAGAAAGAATGACTTGCCTGATAAGTATCGGTGCAAGAATGATTTTTGGGGTTACACCTCTTCGTCTCACCACTCTTCTGGTGTGAGCTCTGTTTGAGAATAACAAAAGTTTCTGTGTTGGAACTTGACATATTGCAAGCATCCTTTCTCACTATGCAGTTGTATAGCCGATATGGAAATCTTAAGCTCATACTTATATTCATATACATTGCCTCAATTTTGTACTTTGCACTTGCTATTATCTTCAGATGATGACACCTTTTCTTGTTAAAATCCTTCATACGCCCATCGATTCAGGTTACTCATATGGTGACTCTATGGCATTCTGAGTTTGAAATGCATTTTGTCTTTAACCACAACCACTTTCATATTTTCTATTTTGCGCTTATTTCTTCCTTATTTTCGTGTTGGTTGCAAGACACATGGACTAAGAGCTGGGCAAGAAGCTGCAAAGAAAGGAATCGGATTCATTGAGGTATGTATTGCTGTGTTGCTTGTTGTTACTTTCTGAGATATACAACATAGACAAGCTATGTTATTGAGTTCCCAGAAGTCTGGTGTTTCCTATTCTCTGTAGTTTATATTGTACAGAGTTTTAGCTATGATGATTGATCCGAAAGACTAAAGGAGTGATCTGCTGTATCATAGTTAGGAACTATTTTACTGGGAAAGACGAAGGCTCTCCCTTACAGTCTTCACTTGAGGGTAGAATTCCAGTCAACTTGTCAGTCAGCATTCATAACTGACTTCTACCACCGACTAAAAAAATGTAGAATTTGGTATATGCCTCATTTTCCGTCTGTAGAAAGTTTTTTTTTTTTGGATGATAGACAGTATGATGAATATAGAAATCTAATAGTAGAAGACTTTCTGCCTATTTATTTTATTTTATTACTTCTTTTTACTTGGTTATAAACCTTTGAATCTCTCTGTAATGTTATATGTTGTGAAGCAATTGAGTCCCTCAGCGGTTAAAAAGTTTAAAAGACTACATTGAGTTTCTAAGGGTCCTAGTAATGGGTTTATCAGCTAAATGGGCTCTCCTTTTGGGTTATCCTAGTTAGTATATAGCCATTATGGTATTTTTTCTTCTATATGTCTTTTGTGCAAACCTCCCATAGGGTGATAATTCCCACTCATAGACGCCATCATTGGGTCATATGATTCTCAAGTTTTTGATATATGCCTGAAATTGGATTGTGCAGGCATTTGCATTGATTGGGAAGGAGGAAGGTATCAAAGGATATTGGAAAGGAAACCTTCCACAGGTATTTGCACCATTTTCCCAGAGTCACATTTCTAGTGGATTCTTGGTGATTGCTTTTTTAAGACATCAAGTTGATTATTTTCTTTTAATGGTTTAGGTGATACGGATCATACCTTATAGTGCGGTGCAGTTATTTGCTTATGAAACGTACAAGGTAATGAAACATCTTTGGAGAAAACTTTAACACTGGTTTGATTGTTTGGCTAGAATGAAGTTGATTTGACACTTCTATTTACAGAAACTTTTTCAAGGAAAGGATGGGGAGCTTTCTGTCATTGGAAGACTAGCAGCAGGTGCTTGTGCTGGCATGACTTCTACTTTTGTAAGTTTGCATTATGGGAACACCATATAGTTTTTCTAAATTGTCCATTTGGCATATAATTTTTGCAATTATGTTTGCACAAGTGAAATAGACCTGGCAGAAACTTAGTGCTTATTGTCATCACAGTAATATTACTGATCTGAGCACTGTTGTTTGCTTTATAAGATTTATTCGAAACCTTCCATTTGATCTCCCTTCCCCTGCAGGGATGAGAATGAGGGGCCATCAGTATCTCAATTATTCATTTGCCTGCTCTTCTTTGTGTTGTTATTTACTCTCTTTTTCATCTGTCTTCAAGACGGTTAACTTGTTTATTTTATGTCAGGTAACCTACCCACTCGATGTTCTCAGGTTGAGATTAGCAGTAGACCCTGGATATAAAACAATGAGTGAGGTAAGAATCGGATAACTCAGAATTTGTGACGCCAGGACATATCTGAATCTTTATGTCAATTATTTACAGGTTGCTTTAAACATGCTGAAAGAGGAAGGCTTTGCATCCTTTTATAATGGTCTCGGGCCCTCGCTCATTGGAATAGCTCCATATATTGCTGTGAACTTTTGTGTTTTTGACTTGTGAGCCTATGGTCTTTTAAAGATCCTTTTTCTATATCATCTGAAGACAGAGTCCTGGTGTTACTGTAACCTAAATGATACTTCTCTGAATGTCAGGGTGAAAAAAGCTTTGCCAGAAGAGTATCAGAAACGAACTGAAGCCACTCTGGCTACAGGTTTGATTTCAGCAACTATTGCCACTCTATTGTGCTATCCATTGGACACAGTGAGAAGGCAAATGCAAATGAAGGGTACACCTTATATGACAATTTTTGATGCCTTCCCAGGTAAAGAATTCTAAAAGATCGTCAATATTTGTATATCTTTTTGTAACTAGATATGGAATTTGTCAAACTGTGTTTGTCTTCCTTTCACTGATGAGTCCACAGAAGCAGTGACAAATAATCAACTTAATCTGCAAATTTCATATTATCGACTGAAGAACTTCTTAGTTTAAGGTGTTTAAAACTATAGGAATTGCACTTTCTAAAGAAGAATCCAAAAAACTGAATGTAAATGTAATAAACAAATGCTAATATGTTAGACTCAGTAAACAGATTATCTAAAGGCAGGATTGTTTTTGTTCCATCTTTCTATACTTAGTTCTTTTAACCTAAACCATATTTTTGTCTTGCTTGGTTGGTTCACATGTCCGGTGATCAACGTTTTGCATGATCCTGATTCACAAGTCCTGCTGTCCAAGTTCTTCCTAGTTTACTATAGGGGGGAGGGGAGGGGGGGTCCTTGGCTTTCGGCCTAAAGTGTAGTGTCTACCTTTGGGTGCACTGTTGTAGCCATAGATACACTGTGGTACTAGCTTCACAATGCCCATACCCCAGCCTTGCTTTAAAGGGATGCATTAATATGCTCCTTAGCCCCCTTTTTTTGTTTGGATTGCTTCCTCATAGTTTGCCCCAAAATATGGTTCGTTTCTTAGATGGTAAGGTCCACCTATTTCAGAATCAAATTATATATTATTTGTTTTTAACTAACATCTTCACACCTATCACATCATCCAATAATGCTGACAAATATCTACCAAAGTTAGATATAACAGATCAGTTTTCTCTTAAGCTCTACTCAACATAGGTCATAATAAATGGGATGAGCGAGAAAAATGAAATAGCTTTATGTATGAGCAGCTTTAACAAAACAATTTTCCACTTTCTGATGTATCTGTGCTTCAAATCCTCAAGGGTAAAGTATCAAGGAGCATAAATTGTCAAAAATTTGATGACATTTTGATTTCAAGATGTAAATTCTTCAAACTTGTTAACTTTAAACTTCATTTTTTTGGGGAAAAACGAACATTTAACATTCAGTGACAGATTGATTGTATTGTGCTTTTTGAAGTCCATGTTTAACAAGCTTGAGAGGGGATTGCCTCCAGGGTTTGGTATACTGGTAAGAGTGTAACATGTTATGTGTGAATAGGCAGCTCGTCACAGGTTCGAATCCTGTGGCAAACAAAAACCTGGTATTTAAGTGGAGAATGGTGGAGGGGCGGACCCATTATCGGTCATGTTTGGAACCGTGTGCAACTGACCCTCAGGGATTAATTAGTTATCAAAATAGAAAAAATAACTTGAGAGGGGATCTGAGTTACTCTGAACTGAGAAAAATGTTCAACCTAATACACTTTCTAATTGATTATGTCACCCTTTTCTATTGCAGGTATAGTGGCCCGTGATGGTATAGTTGGACTCTACAGGGGTTTTGTTCCCAATGCACTGAAAACTCTCCCTAATAGCAGGTGCAGTTTTCTCATTGCTATTGCCTTTTTAGGGGTCTCTCTTCACTTGGACTATCATATCTGTGTTGCAAAATAAAAAACGATATGACTTTCTTTCTTCTCGTTGTTCTCCAAAGGGAACCATAAAAGGGATTACTATTGTTACCATGTACAGTGATCATTGCTAATATTTAACATTCTTGCCTAACATATGATTCTTTGTTTGTCTTCATTTTCTGGTACAGCATTAGGCTTACTACTTTTGACACCGTGAAGCGTTTGCTAGCAAGAAGTGAGGAAGAGTTCCAGAAAATTATAGAGGAAAACCGCAGGCAAAAGGCAGAATAATTCCCAAGTAGATCTGATTCCATGGAGATAATTGATCTCGTCATTTTGAAGCATTGGTTCGACGAGCAAGAAACTTAGCTT-C----C-----AGTA-ATTACCTAGAGCTTCATTTTGTAAAACCAGGTTTAGTTGCCAGAATAGTTAGGTTGGCTTCCTTGTGACAACAAATATCTCTGTTATTTTTAGAGCTCATTTGAATGTATAATAATTACTTCATTCATTTCTGCATTTGAAGCAATTTGCAGTCTCCTTTAAATCCTTGTTTTATTTTCACATTGTAATCAATTAGTCAAAGTTCAAACATAAGAACAAAATTGATGTGAATAGTGGTGTTTAAA</genome_strand>
        <mrna_strand>AAACCCCTTATCTTGTTGACAACAGAGGAAGAAAAAGCTTCATTCCTCTGTATCTACCATGAGGAAGAACCGACCCGTTTTGGTATCCATGGACATTCCGGCTCTTGAATTGTCCAACACCAGTATTCAATCTTACCCATCACAACAATGGAAGAACAAATTTGTCGGTTCTGCTAGTTTTTCTAAAGAAATTGGGTGTAATTTTGGTTGTATTTCGTTATCGGAGAATTTGGATGAAAAAGCCTTTAAAGGGTTTCATCCTACAACAACTCAGCTTTTAAAGCACCCTTTGGCTATGGTTGCTTTGATTCCCAGAGAAGCTGCATTGTTTGCTGCAGGTGCTATTGCTGGTGCCGCTGCAAAATCTGTTACTGCACCTCTTGACCGTATCAAGCTCCTCATGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACATGGACTAAGAGCTGGGCAAGAAGCTGCAAAGAAAGGAATCGGATTCATTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTTGCATTGATTGGGAAGGAGGAAGGTATCAAAGGATATTGGAAAGGAAACCTTCCACAG................................................................................................GTGATACGGATCATACCTTATAGTGCGGTGCAGTTATTTGCTTATGAAACGTACAAG....................................................................................AAACTTTTTCAAGGAAAGGATGGGGAGCTTTCTGTCATTGGAAGACTAGCAGCAGGTGCTTGTGCTGGCATGACTTCTACTTTT.....................................................................................................................................................................................................................................................................................................................................GTAACCTACCCACTCGATGTTCTCAGGTTGAGATTAGCAGTAGACCCTGGATATAAAATGATGAGTGAG.....................................................................GTTGCTTTAAACATGCTGAAAGAGGAAGGCTTTGCATCCTTTTATAATGGTCTCGGGCCCTCGCTCATTGGAATAGCTCCATATATTGCTGTGAACTTTTGTGTTTTTGACTT................................................................................................GGTGAAAAAAGCTTTGCCAGAAAAGTATCAGAAACGAACTGAAGCCACTCTGGCTACAGGTTTGATTTCAGCAACTATTGCCACTCTATTGTGCTATCCATTGGACACAGTGAGAAGGCAAATGCAAATGAAGGGTACACCTTATATGACAATTTTTGATGCCTTCCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATAATGGCCCGTGATGGTATAGTTGGACTTTACAGGGGTTTTGTTCCCAATGCACTGAAAACTCTCCCTAATAGCAG................................................................................................................................................................................................................................CATTAGGCTTACTACTTTTGACACCGTGAAGCGTTTGCTAGCAAGAAGTGAGGAAGAGTTCCAGAAAATTATAGAGGAAAACCGCAGGCAAAAGGCAGAATAATTCCCAAGTAGATCTGATTCAATGGAGATAATTGATCTCGTCATTTTGAAGCATTGGTTCGACGAGCAAGAAACTTAGCTTCCAGTACTATATAGTATATTACCTAGAGCTTCATTTTGTAAAACCAGGTTTAGTTGCCAGAATAGTTAGGTTGGCTTCCTTGTGACAACAAATATCTCTGTTATTTTTAGAGCTCATTTGAATGTATAATAATTACTTCATTCATTTCTGTATTTGAAGCAATTTGCAGTCTCCTTTAAATCCTTCTTTTATTTTCACATTGTAATCAATTAGTCAAAGTTCAAACGTAAGAACAAAATTGATGTG-AGATTAGAGGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026I24-W9iz2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317937" ref_strand="+" ref_description="SGN-U317937        Tomato 200607 #1 [16 ESTs aligned] arabidopsis/peptide: | Symbol: None | cation exchanger, putative (CAX3), similar to high affinity calcium antiporter CAX1 (Arabidopsis thaliana) gi:9256741:gb:AAB05913; Ca2+:Cation Antiporter (CaCA) Family member PMID:11500563; non-consensus AT-acceptor splice site at intron 1 | chr3:19250404-19253856 FORWARD | Aliases: ATEM1.11(evalue: 2e-76, score=282) genbank/nr: gi|3063392|dbj|BAA25753.1| Ca2+/H+ exchanger [Vigna radiata] (evalue: 3e-79, score=298)">
      <seq>cggccgaattgaagatgagagttatctcaatataaaaccaaaataagttattttccaaagaaaaagacaaaacaaaagaatggcttcatcatcaccagcagcagaaacatggctcttagaaaatggaaatattaagcctttaagcaaagagatgagacatgggcatggtcgtagccatggacgaacggctcacaacgtatcgtcttcgtctcttaggaaaaagtctgatctaacccttgtaaggaaagtaccttgtgccattgttagagatgttcttgctaatattcaagaggtcattttgggaactaagctttttgtgctcttcattgccatacctattgccattattgctcattacaaaaactttggaagatcatgggtttttggattgagtttacttggacttactccattggctgaacgtgtcagctttttgacagagcaaatagctttttttactggtccaacagttggagggcttctaaatgcaacatgtggaaatgccactgaacttataatagcaatatttgctttaatcgaacataaagtggatgttgtaaaatattcactcttgggatctattctttcgaatcttcttttggttcttggcacttcactcttttgtggtggtattgcaaatatatcaaaggaacaaaaatatgataggaaacaagcagatgtgaactctctacttttattattgggattattatgtcacgtgttgcctttgatgtttcgttatgctggagttggagaatcagcagcaataacagcacaagcaacattgaatctatcaagagttagctgcattggtatgcttcttgcttattttggttatcttgtgttccaattgtggactcaccgacaacttttcgacgcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-W9iz2/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="53554" stop="50991"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53261" g_stop="52889" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="373" r_length="373" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52888" i_stop="52410" i_length="479">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52409" g_stop="52342" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="441" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52341" i_stop="52222" i_length="120">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.765" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52221" g_stop="52193" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="470" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52192" i_stop="51794" i_length="399">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51793" g_stop="51597" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="667" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51596" i_stop="51506" i_length="91">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.795" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51505" g_stop="51291" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="668" r_stop="881" r_length="214" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-U317937" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>882</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U317937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53261" e_stop="52889"/>
          <exon e_start="52409" e_stop="52342"/>
          <exon e_start="52221" e_stop="52193"/>
          <exon e_start="51793" e_stop="51597"/>
          <exon e_start="51505" e_stop="51291"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATACTCATACAAGATGAGAGTTATCTCAATATAAAACCAAAATAAGTTATTTTCCAAAGAAAAAGACAAAACAAAAGAATGGCTTCATCATCACCAGCAGCAGAAACATGGCTCTTAGAAAATGGAAATATTAAGCCTTTAAGCAAAGAGATGAGACATGGGCATGGTCGTAGCCATGGACGAACGGCTCACAACGTATCGTCTTCGTCTCTTAGGAAAAAGTCTGATCTAACCCTTGTAAGGAAAGTACCTTGTGCCATTGTTAGAGATGTTCTTGCTAATATTCAAGAGGTCATTTTGGGAACTAAGCTTTTTGTGCTCTTCATTGCCATACCTATTGCCATTATTGCTCATTACAAAAACTTTGGAAGAGTAAGTTCTCTTTAATTTACATTCAATTGTGTGATTATTTCGATGGTTGCACAATTTAATATGGTATTAGAGTGGACGGGAGGTTGTTTTGAATAAAATGAAATGAATATTCATGCGTTTAGGTTAATTTTAAAACGAATCAGGTACACACGTGAGGACAAATAGTGGAGCAAAAAATATTATACAAAAAAAATTAAAGGGATTCAACTCAACGTTTACTTTCTATGCATATAAATTAATTTTAATCTTCTATTATATACTACGTGATGGAAATTTGAATGAATCCCGCCATGCATTAATTGAATACATAATATAATTTAAAAGTGTTATTTTATTTAACAACACAATTTGTTTTCTTTTTCTTTTTTTTGAATAACTAAAAGATCCGTTGAAAGATGTGAATCTGAGAATATTTTTTTGTGATTTCTTGATTAATTTATTTTATAATACTGACATTTTATTTTTCTATATTATATCAGTCATGGGTTTTTGGATTGAGTTTACTTGGACTTACTCCATTGGCTGAACGTGTCAGCTTTTTGACAGAGTAAGTTAAATTGTTTCTTTGTATGGTATAATTTGATTATTAAAATTATTTATGAGTCGATTTGAATTGATTATTACTAAATCACCTATTATTAACATTTTTGATTGATTTGAATTGTAGGCAAATAGCTTTTTTTACTGGTCCAACAGGTACTTCCCCATTTATTTAGTTTTTAATCTTTTGTTGGCTTTTTTTTAATCCACAAAACACAGAGATTTTTAATCCTTTGTTTATATAATATAGTGAAGGACCACGACTAACGTTATGAAATAAATCAATATCAGTATAAAAATTATGAATTTCCATCAAAGATATTTAATATGATATTATAATTTTTCGACGAAAAATATTGGATAGACCAGGTCTAGGTAGTTTCACTATTAAATTGAACAAACATAAAATTGGAAATTCCTTTGTTTTTTTCGAATCAATAAACAATTTAACAACAACCTCTAGCTAGTTTAATGTTACTTGACATATAAATTAGATTATTTTTTTTTTAAAAAAAAATTCTAATTATTGTTTGTTTAATTTGTTGCATTAATCAGTTGGAGGGCTTCTAAATGCAACATGTGGAAATGCCACTGAACTTATAATAGCAATATTTGCTTTAATCGAACATAAAGTGGATGTTGTAAAATATTCACTCTTGGGATCTATTCTTTCGAATCTTCTTTTGGTTCTTGGCACTTCACTCTTTTGTGGTGGTATTGCAAATATATCAAAGGAACAAAAATATGATAGGGTAAGTAATTTAGTTATTTATTTTATAACATAGTGATATTTCAACTGTGTCACGTAGATTGAGATGTTAATTTTTTGTGTGATTAAAACAGAAACAAGCAGATGTGAACTCTCTACTTTTATTATTGGGATTATTATGTCACGTGTTGCCTTTGATGTTTCGTTATGCTGGAGTTGGAGAATCAGCAGCAATAACAGCACAAGCAACATTGAATCTATCAAGAGTTAGCTGCATTGTTATGCTTCTTGCTAAGTTTGGTTATCTTGTGTTCCAATTGTGGACTCACCGACAACTTTTTCGACGCAC</genome_strand>
        <mrna_strand>CGGCCGAATTGAAGATGAGAGTTATCTCAATATAAAACCAAAATAAGTTATTTTCCAAAGAAAAAGACAAAACAAAAGAATGGCTTCATCATCACCAGCAGCAGAAACATGGCTCTTAGAAAATGGAAATATTAAGCCTTTAAGCAAAGAGATGAGACATGGGCATGGTCGTAGCCATGGACGAACGGCTCACAACGTATCGTCTTCGTCTCTTAGGAAAAAGTCTGATCTAACCCTTGTAAGGAAAGTACCTTGTGCCATTGTTAGAGATGTTCTTGCTAATATTCAAGAGGTCATTTTGGGAACTAAGCTTTTTGTGCTCTTCATTGCCATACCTATTGCCATTATTGCTCATTACAAAAACTTTGGAAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGGGTTTTTGGATTGAGTTTACTTGGACTTACTCCATTGGCTGAACGTGTCAGCTTTTTGACAGA........................................................................................................................GCAAATAGCTTTTTTTACTGGTCCAACAG...............................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGGGCTTCTAAATGCAACATGTGGAAATGCCACTGAACTTATAATAGCAATATTTGCTTTAATCGAACATAAAGTGGATGTTGTAAAATATTCACTCTTGGGATCTATTCTTTCGAATCTTCTTTTGGTTCTTGGCACTTCACTCTTTTGTGGTGGTATTGCAAATATATCAAAGGAACAAAAATATGATAGG...........................................................................................AAACAAGCAGATGTGAACTCTCTACTTTTATTATTGGGATTATTATGTCACGTGTTGCCTTTGATGTTTCGTTATGCTGGAGTTGGAGAATCAGCAGCAATAACAGCACAAGCAACATTGAATCTATCAAGAGTTAGCTGCATTGGTATGCTTCTTGCTTATTTTGGTTATCTTGTGTTCCAATTGTGGACTCACCGACAAC-TTTTCGACGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026I24-W9iz2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U336341" ref_strand="+" ref_description="SGN-U336341        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | calcium exchanger (CAX1), identical to high affinity calcium antiporter CAX1 (Arabidopsis thaliana) gi:9256741:gb:AAB05913, except a possible frameshift at base 58008. Sequence has been confirmed with 5 sequencing reads.; Ca2+:Cation Antiporter (CaCA) Family member PMID:11500563 | chr2:15996161-16000354 REVERSE | Aliases: F16M14.10, F16M14_10(evalue: 6e-36, score=147) genbank/nr: gi|41059089|gb|AAR99078.1| CAX [Suaeda maritima subsp. salsa] (evalue: 2e-34, score=149)">
      <seq>acaaatagtggagcaaaaaatattatacaaaaaaaattaaagggattcaactcaacgtttactttctatgcatataaattaattttaatcttctattatatactacgtgatggaaatttgaatgaatcccgccatgcattaattgaatacataatataatttaaaagtgttattttatttaacaacacaatttgttttctttttcttttttttgaataactaaaagatccgttgaaagatgtgaatctgagaatatttttttgtgatttcttgattaatttattttataatactgacattttatttttctgtattatatcagtcatgggtttttggattgagtttacttggacttactccattggctgaacgtgtcagctttttgacagagcaaatagctttttttactggtccaacagttggagggcttctaaatgcaacatgtggaaatgccactgaacttataatagcaatatttgctttaatcgaacataaagtggatgttgtaaaatattcactcttgggatctattctttcgaatcttcttttggttcttggcacttcactcttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-W9iz2/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="53031" stop="51340"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52731" g_stop="52342" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="390" r_length="390" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52341" i_stop="52222" i_length="120">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.765" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52221" g_stop="52193" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="419" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52192" i_stop="51794" i_length="399">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51793" g_stop="51640" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="573" r_length="154" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-U336341" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U336341" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52731" e_stop="52342"/>
          <exon e_start="52221" e_stop="52193"/>
          <exon e_start="51793" e_stop="51640"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAATAGTGGAGCAAAAAATATTATACAAAAAAAATTAAAGGGATTCAACTCAACGTTTACTTTCTATGCATATAAATTAATTTTAATCTTCTATTATATACTACGTGATGGAAATTTGAATGAATCCCGCCATGCATTAATTGAATACATAATATAATTTAAAAGTGTTATTTTATTTAACAACACAATTTGTTTTCTTTTTCTTTTTTTTGAATAACTAAAAGATCCGTTGAAAGATGTGAATCTGAGAATATTTTTTTGTGATTTCTTGATTAATTTATTTTATAATACTGACATTTTATTTTTCTATATTATATCAGTCATGGGTTTTTGGATTGAGTTTACTTGGACTTACTCCATTGGCTGAACGTGTCAGCTTTTTGACAGAGTAAGTTAAATTGTTTCTTTGTATGGTATAATTTGATTATTAAAATTATTTATGAGTCGATTTGAATTGATTATTACTAAATCACCTATTATTAACATTTTTGATTGATTTGAATTGTAGGCAAATAGCTTTTTTTACTGGTCCAACAGGTACTTCCCCATTTATTTAGTTTTTAATCTTTTGTTGGCTTTTTTTTAATCCACAAAACACAGAGATTTTTAATCCTTTGTTTATATAATATAGTGAAGGACCACGACTAACGTTATGAAATAAATCAATATCAGTATAAAAATTATGAATTTCCATCAAAGATATTTAATATGATATTATAATTTTTCGACGAAAAATATTGGATAGACCAGGTCTAGGTAGTTTCACTATTAAATTGAACAAACATAAAATTGGAAATTCCTTTGTTTTTTTCGAATCAATAAACAATTTAACAACAACCTCTAGCTAGTTTAATGTTACTTGACATATAAATTAGATTATTTTTTTTTTAAAAAAAAATTCTAATTATTGTTTGTTTAATTTGTTGCATTAATCAGTTGGAGGGCTTCTAAATGCAACATGTGGAAATGCCACTGAACTTATAATAGCAATATTTGCTTTAATCGAACATAAAGTGGATGTTGTAAAATATTCACTCTTGGGATCTATTCTTTCGAATCTTCTTTTGGTTCTTGGCACTTCACTCTTTTG</genome_strand>
        <mrna_strand>ACAAATAGTGGAGCAAAAAATATTATACAAAAAAAATTAAAGGGATTCAACTCAACGTTTACTTTCTATGCATATAAATTAATTTTAATCTTCTATTATATACTACGTGATGGAAATTTGAATGAATCCCGCCATGCATTAATTGAATACATAATATAATTTAAAAGTGTTATTTTATTTAACAACACAATTTGTTTTCTTTTTCTTTTTTTTGAATAACTAAAAGATCCGTTGAAAGATGTGAATCTGAGAATATTTTTTTGTGATTTCTTGATTAATTTATTTTATAATACTGACATTTTATTTTTCTGTATTATATCAGTCATGGGTTTTTGGATTGAGTTTACTTGGACTTACTCCATTGGCTGAACGTGTCAGCTTTTTGACAGA........................................................................................................................GCAAATAGCTTTTTTTACTGGTCCAACAG...............................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGGGCTTCTAAATGCAACATGTGGAAATGCCACTGAACTTATAATAGCAATATTTGCTTTAATCGAACATAAAGTGGATGTTGTAAAATATTCACTCTTGGGATCTATTCTTTCGAATCTTCTTTTGGTTCTTGGCACTTCACTCTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026I24-W9iz2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U336340" ref_strand="+" ref_description="SGN-U336340        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | cation exchanger, putative (CAX3), similar to high affinity calcium antiporter CAX1 (Arabidopsis thaliana) gi:9256741:gb:AAB05913; Ca2+:Cation Antiporter (CaCA) Family member PMID:11500563; non-consensus AT-acceptor splice site at intron 1 | chr3:19250404-19253856 FORWARD | Aliases: ATEM1.11(evalue: 2e-37, score=152) genbank/nr: gi|3063392|dbj|BAA25753.1| Ca2+/H+ exchanger [Vigna radiata] (evalue: 4e-36, score=154)">
      <seq>aaacatatctcttataaaatggaaatattaatcctttaagcaaatatattagacatgggcatggtcctatccatggactaacggctcacaacgtatcgtcttcgtatcttaagaaaaagtctgatctaacccttgtaaggaaagtaccttgtgccattgttagagatgttcttgctaatattcaagaggtcattttgtgaactaagctttttgtgctcttcattgccatacctattgccattattgctcattacaaaaactttggaagatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-W9iz2/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="53457" stop="52585"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53157" g_stop="52889" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="269" r_length="269" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-U336340" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>269</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U336340" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53157" e_stop="52889"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATGGCTCTTAGAAAATGGAAATATTAAGCCTTTAAGCAAAGAGATGAGACATGGGCATGGTCGTAGCCATGGACGAACGGCTCACAACGTATCGTCTTCGTCTCTTAGGAAAAAGTCTGATCTAACCCTTGTAAGGAAAGTACCTTGTGCCATTGTTAGAGATGTTCTTGCTAATATTCAAGAGGTCATTTTGGGAACTAAGCTTTTTGTGCTCTTCATTGCCATACCTATTGCCATTATTGCTCATTACAAAAACTTTGGAAGA</genome_strand>
        <mrna_strand>AAACATATCTCTTATAAAATGGAAATATTAATCCTTTAAGCAAATATATTAGACATGGGCATGGTCCTATCCATGGACTAACGGCTCACAACGTATCGTCTTCGTATCTTAAGAAAAAGTCTGATCTAACCCTTGTAAGGAAAGTACCTTGTGCCATTGTTAGAGATGTTCTTGCTAATATTCAAGAGGTCATTTTGTGAACTAAGCTTTTTGTGCTCTTCATTGCCATACCTATTGCCATTATTGCTCATTACAAAAACTTTGGAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026I24-W9iz2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U332619" ref_strand="+" ref_description="SGN-U332619        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, contains Pfam profile PF01985: Uncharacterised protein family; expression supported by MPSS | chr2:12183719-12185108 REVERSE | Aliases: T17D12.4, T17D12_4(evalue: 2e-27, score=119) genbank/nr: At2g28480(evalue: 1e-25, score=119)">
      <seq>tttttacaaaggaagggattatgtgcaacccgaaattatgtttcctattgataccctgtcaaaaaaaaaggcattggaaaaatccaaatatgagcagtcgctaaagtttgtgaaacgtttcattgcgattgctgaaaaggaacttgaactttactaccgacatgtcgctttatatggtgacccaagtaaccgaagtgcttactccatccttgatgattcaaaaagcccaaaaggaaaacgaaatgctgaaataggtgaggaaaactattcagcaaacaaatttaatatgttggattttgaattggaaattgacgatagttgttttgatgacaaccagtttttataatttgaatttgaaaaaacctgaataggagttttcaattcccccttagtttggaattaactacacctatgtttttatttgggtaaaatatgaagttgttaattaacaagtaggggggtatatgaccgggttgattcaggtttttcaaatatcaaaccaaaccatttatgttgaatttttgaatttataaaccaaatcaaactcatgtttttccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-W9iz2/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="60014" stop="58201"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59714" g_stop="59645" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59644" i_stop="58989" i_length="656">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.989" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58988" g_stop="58503" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="556" r_length="486" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="558" polyA_stop="596"/>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-U332619" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U332619" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59714" e_stop="59645"/>
          <exon e_start="58988" e_stop="58503"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTACAGAGGAAGGGATTATGTGCAACCCGAAATTATGTCTCCTATTGATACACTGTCAAAGAAGAAGGTAAGTTTGTTAGAGCTAAATTTCTTTAATTACCAAGTAATTGCTTCTCATCATGCATTTATGCGCAAGTTCGCTCTTTCAAGTCTTACTGTGCATAGTCCTTCTACCATCAACCTCTAGTCATTCCCACCAGCTTTCACTGTAATTCTCTTTCGATTGATGCGTGAATCCTTCATTTTCTCGATCTTCTTATGCGAAACAGGTATGCAATAGGTGTGGGTACTTTTGTGGATGATTTAAAATATTTCTAAAAATCATCAAAGATTTCACGTACCCGTAACATATGTATATCCTATACATACCTGTAGCTGAATCCATGTTAAACAGCTTATTGTTGACCTGGCTTATAGATGCAGCTGGGTTAATATATCAGGGTAGATCATCTGAAATCCACCTCAACAGCCAAACTCCAACCCTTTTGTGACTTGTATTATTCACTGTACATCACAAAAGAACCATACCCTTCATTGCACCACAGATACCCCTTACTGTTTGTAATTTCATCCTCACATGTTTACTGCTCCTTTGGAATCAGTTCACTATATTTATGGCATAAAGATTTTACTTTTAATATTTTGACTCTGTCTCATTTACCTGTATCTTTGTTTTATCAAATTTGTTTCAATCATGATAAGAATTACTGGTCAATTCTCCAGGCATTGGAAAAATCCAAATATGAGCAGTCGCTAGAGTCTGTGAGACGTTTCATTGCGATTGCTGAAAAGGAACTTGAACTCTACTACCGACATGTCGCTCTATATGGTGACCCAAGTAACCGAAGTGCTTACTCCATCCTTGATGATTCAAGAAGCACAAGAGGAAAACGAAATGCTGAGATAGGTGAGGAGAACTATTCAGCAAGCAAATCTAATATGTTGGATCTTGAATTGGAAATTGACGATAGTTGTTCTGATGACAACCAGTCTTTATAATTTGAATTTGAAAATACCTGAATAGGAGTTTTCAATTCCACCTTAGTTTGGAATTAACTACACCTATGTTTTTATCTGCGTAATATATGAAGTTGTTAATTAGCAAGTAGGGGTGTATATGACCGGGTTGATTCAGGTTTTTCAAATATCAAACCAAACCATTTATGTCGAATTTTTGAATTTATAAACCAAATCAAACTCATGTTTTTC</genome_strand>
        <mrna_strand>TTTTTACAAAGGAAGGGATTATGTGCAACCCGAAATTATGTTTCCTATTGATACCCTGTCAAAAAAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTGGAAAAATCCAAATATGAGCAGTCGCTAAAGTTTGTGAAACGTTTCATTGCGATTGCTGAAAAGGAACTTGAACTTTACTACCGACATGTCGCTTTATATGGTGACCCAAGTAACCGAAGTGCTTACTCCATCCTTGATGATTCAAAAAGCCCAAAAGGAAAACGAAATGCTGAAATAGGTGAGGAAAACTATTCAGCAAACAAATTTAATATGTTGGATTTTGAATTGGAAATTGACGATAGTTGTTTTGATGACAACCAGTTTTTATAATTTGAATTTGAAAAAACCTGAATAGGAGTTTTCAATTCCCCCTTAGTTTGGAATTAACTACACCTATGTTTTTATTTGGGTAAAATATGAAGTTGTTAATTAACAAGTAGGGGGGTATATGACCGGGTTGATTCAGGTTTTTCAAATATCAAACCAAACCATTTATGTTGAATTTTTGAATTTATAAACCAAATCAAACTCATGTTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026I24-W9iz2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317079" ref_strand="+" ref_description="SGN-U317079        Tomato 200607 #1 [17 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, contains Pfam profile PF01985: Uncharacterised protein family; expression supported by MPSS | chr2:12183719-12185108 REVERSE | Aliases: T17D12.4, T17D12_4(evalue: 4e-74, score=275) genbank/nr: At2g28480(evalue: 3e-72, score=275)">
      <seq>accaaaattgttcagtgcataggtactattttgcacctaccctcgagcataagaaatttttttttattttcattttctcaagaactgcagatgctaaatttggcctgtttgaacatctttttaacaatcataactccggtgagttttctctttctctctccatcagatcaccaccataactccgaaatggattaagtttgctgaaactggtgccggataagatggatacacatattattcatcactcaacccattatttatccataaaaatatatgataaatagcctaatttcgagagtcttcacggtgaagtagctcgccagccccgttgaaggcaaacaacaacattatatggctattcctctatttagaagttttcgaagacttctgttactttcacatcgcaggcctctatcctcttcctctacctcgtacacgccaattcttggaaaccgagaaagctttttgcacttgtcaaggtttgtgcctcaaaatagcttaacccgacaaggctcatgttgggacttgaggaactttagtcatggaagtgtgaattttgttataacaaaagatgggaaacccaagtttgagacacatgaagtggaagcaccaaagaaagaaaaatggaagacaaagaagaggctgaagctgcaaaggaagagagagaagaagaagagaaatgctgcaaataagagggatccaagaaggcttggtctaaaggggaagaagaagaagcagaagtttgacactgctgaagaaagaattaagcagaagatagaaaatgcaaaagtcaaagaagcgctgttgattgagagactaaagcgatatgaggttaccaaagttcaaggtcctgaggttaagccacacttcctcactggcgaagaacgattctatataaaaaagatggggcaaaaaaggtctaattatgtgccaattggcagaaggggagtctttggtggtgttattcttaatatgcatttacattggaaaaaacatgaaacagtcaaagtcatatgcaaacctggtcaagtccaagaatatgccgatgaaattgcaagactgagtggcggcatcccaattcagataattgcagatgatacaatagttttttacagaggaagggattatgtgcaacccgaaattatgtctcctattgatacactgtcaaagaagaaggcattggaaaaatccaaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-W9iz2/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="62302" stop="58669"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62002" g_stop="61723" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="274" r_length="274" r_score="0.879"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61722" i_stop="61614" i_length="109">
            <donor d_prob="0.155" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61613" g_stop="61451" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="437" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61450" i_stop="61337" i_length="114">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61336" g_stop="60991" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="783" r_length="346" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60990" i_stop="60038" i_length="953">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60037" g_stop="59645" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="784" r_stop="1176" r_length="393" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="59644" i_stop="58989" i_length="656">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58988" g_stop="58969" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1177" r_stop="1196" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-U317079" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>1202</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U317079" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62002" e_stop="61723"/>
          <exon e_start="61613" e_stop="61451"/>
          <exon e_start="61336" e_stop="60991"/>
          <exon e_start="60037" e_stop="59645"/>
          <exon e_start="58988" e_stop="58969"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAAAATTGTTCAGTGCATAGGTACTATTTTGCACCTACCCTCGAGCATAAGAAATTTTTTTTTATTTTCATTTTCTCAAGAACTGCAGATGCTAAATTTGGCCTGTTTGAACATCTTTTTAACAATCTTTCCTTAGGTTATACTTATTTCTCTTCAACGGATTAGTAGTTTTTTCTTCTATATGCTAGAAATGGATTAAGTTTGCTGAAACTGGTGCCGGATAAGATGGATACACATATTATTCATCACTCAACCCATTATTTATCCATAAAAATATAGTAAGTTGGATATTCATCCATTTTTGTTTAACTTGTCCATATTCAATTCGACCCGCTCATTTGTCAGCTCCAGTCTACATGGTGAATTTCCCTTTTATTTTGTATCCAGTGATAAATAGCCTAATTTCGAGAGTCTTCACGGTGAAGTAGCTCGCCAGCCCCGTTGAAGGCAAACAACAACATTATATGGCTATTCCTCTATTTAGAAGTTTTCGAAGACTTCTGTTACTTTCACATCGCAGGCCTCTATCCTCTTCCTCTACCTCGTACACGTAAAGCTAATGTCTTTTTAAAAATTTCTTCACTTGTTTCTCTAGTTAATTTTGATTAAATGGAGTATGTCTGATTTAGTTTTGATTATCTCCCTCTATTGTCTCTATATTCAGGCCAATTCTTGGAAACCGAGAAAGCTTTTTGCACTTGTCAAGGTTTGTGCCTCAAAATAGCTTAACCCGACAAGGCTCATGTTGGGACTTGAGGAACTTTAGTCATGGAAGTGTGAATTTTGTTATAACAAAAGATGGGAAACCCAAGTTTGAGACACATGAAGTGGAAGCACCAAAGAAAGAAAAATGGAAGACAAAGAAGAGGCTGAAGCTGCAAAGGAAGAGAGAGAAGAAGAAGAGAAATGCTGCAAATAAGAGGGATCCAAGAAGGCTTGGTCTAAAGGGGAAGAAGAAGAAGCAGAAGTTTGACACTGCTGAAGAAAGAATTAAGCAGAAGATAGAAAATGTGAGCTAATGATTTTCCTTTTTTACTTAAAAGCCAATGATTGATTTTGCCATTAGTTCTCCTGCTGAGGATTTATATCACCCACCCCAACTTGTTTGGAATTGAGATGTAATTCTTGTCTGTTTAGCTATTACCACTACTACTATGGCTCAATGCCGAACTATTTGGTCTCGACTGTATGTCTTCTCGAATCCATCCCATTCCATTTGGACCAGTATGATAGTTAATCTTTATATTAGCTTAATAATCTGTAATAGCATAAAGAATGAACTGAATTGTAGAACTTGGGCAGGGTAATGATTTATAAGAATTTTGGAAATGAGCTTCAACCTATTTTCTTCAATTTGGTTGACAAAAAAATAAATTAGAAGGGGAAGTTGGAAGGAAGATATAGAGGAAAATGACAAGTAGATCTATACATGTGTTCTTTGTTGGTATTGTTAAACTTCTTGAGTAATCTTTTATATTACTTATTCTCATTTGATACTCATATTAGAGCGAGGTTGTAGAAGCATTATTGAACCTGGATTTGTCTCTTTCCCTTATCTTCTTGGCTATGTTTTTTAATAGTAATTGCAAAGATCTATTTTCTCTATGATTTCAGCGTGGAAATACTTAGTGAGTACAGTTATTTTCTTGAAACTGGAGAAAGAAAAGAATCTCTTTACTTTTCAGTTACTTTTAACTTTTGTGTCATCTACTGAAAACCAAGTTACAGCAAGTGTGCCTGTTTCGTGGTTGCTACCTCACTGAAGCATGGAAGACATTTCGTAGTTAAGTTTTATATCTATCTTACCTTTTTCCTGGTTTAGTATGTGAAGAATTGTGTGGTCACCTTATGTTTGTGTTTATTGAAGCTAAGATTTGTTTTATTCCCATTTCCATATGACTTATATACGAAATAATGGAGTTTTTTATTTTAACAAAAGCTGACATGTTTTGGCTTGGGTCAGGCAAAAGTCAAAGAAGCGCTGTTGATTGAGAGACTAAAGCGATATGAGGTTACCAAAGTTCAAGGTCCTGAGGTTAAGCCACACTTCCTCACTGGCGAAGAACGATTCTATATAAAAAAGATGGGGCAAAAAAGGTCTAATTATGTGCCAATTGGCAGAAGGGGAGTCTTTGGTGGTGTTATTCTTAATATGCATTTACATTGGAAAAAACATGAAACAGTCAAAGTCATATGCAAACCTGGTCAAGTCCAAGAATATGCCGATGAAATTGCAAGACTGAGTGGCGGCATCCCAATTCAGATAATTGCAGATGATACAATAGTTTTTTACAGAGGAAGGGATTATGTGCAACCCGAAATTATGTCTCCTATTGATACACTGTCAAAGAAGAAGGTAAGTTTGTTAGAGCTAAATTTCTTTAATTACCAAGTAATTGCTTCTCATCATGCATTTATGCGCAAGTTCGCTCTTTCAAGTCTTACTGTGCATAGTCCTTCTACCATCAACCTCTAGTCATTCCCACCAGCTTTCACTGTAATTCTCTTTCGATTGATGCGTGAATCCTTCATTTTCTCGATCTTCTTATGCGAAACAGGTATGCAATAGGTGTGGGTACTTTTGTGGATGATTTAAAATATTTCTAAAAATCATCAAAGATTTCACGTACCCGTAACATATGTATATCCTATACATACCTGTAGCTGAATCCATGTTAAACAGCTTATTGTTGACCTGGCTTATAGATGCAGCTGGGTTAATATATCAGGGTAGATCATCTGAAATCCACCTCAACAGCCAAACTCCAACCCTTTTGTGACTTGTATTATTCACTGTACATCACAAAAGAACCATACCCTTCATTGCACCACAGATACCCCTTACTGTTTGTAATTTCATCCTCACATGTTTACTGCTCCTTTGGAATCAGTTCACTATATTTATGGCATAAAGATTTTACTTTTAATATTTTGACTCTGTCTCATTTACCTGTATCTTTGTTTTATCAAATTTGTTTCAATCATGATAAGAATTACTGGTCAATTCTCCAGGCATTGGAAAAATCCAAATA</genome_strand>
        <mrna_strand>ACCAAAATTGTTCAGTGCATAGGTACTATTTTGCACCTACCCTCGAGCATAAGAAATTTTTTTTTATTTTCATTTTCTCAAGAACTGCAGATGCTAAATTTGGCCTGTTTGAACATCTTTTTAACAATCATAACTCCGG-T-GA-GT-TTTCTCTTTCTCTCTCCATCAG--ATCACCACCATAACTCCGAAATGGATTAAGTTTGCTGAAACTGGTGCCGGATAAGATGGATACACATATTATTCATCACTCAACCCATTATTTATCCATAAAAATATA.............................................................................................................TGATAAATAGCCTAATTTCGAGAGTCTTCACGGTGAAGTAGCTCGCCAGCCCCGTTGAAGGCAAACAACAACATTATATGGCTATTCCTCTATTTAGAAGTTTTCGAAGACTTCTGTTACTTTCACATCGCAGGCCTCTATCCTCTTCCTCTACCTCGTACAC..................................................................................................................GCCAATTCTTGGAAACCGAGAAAGCTTTTTGCACTTGTCAAGGTTTGTGCCTCAAAATAGCTTAACCCGACAAGGCTCATGTTGGGACTTGAGGAACTTTAGTCATGGAAGTGTGAATTTTGTTATAACAAAAGATGGGAAACCCAAGTTTGAGACACATGAAGTGGAAGCACCAAAGAAAGAAAAATGGAAGACAAAGAAGAGGCTGAAGCTGCAAAGGAAGAGAGAGAAGAAGAAGAGAAATGCTGCAAATAAGAGGGATCCAAGAAGGCTTGGTCTAAAGGGGAAGAAGAAGAAGCAGAAGTTTGACACTGCTGAAGAAAGAATTAAGCAGAAGATAGAAAAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAAGTCAAAGAAGCGCTGTTGATTGAGAGACTAAAGCGATATGAGGTTACCAAAGTTCAAGGTCCTGAGGTTAAGCCACACTTCCTCACTGGCGAAGAACGATTCTATATAAAAAAGATGGGGCAAAAAAGGTCTAATTATGTGCCAATTGGCAGAAGGGGAGTCTTTGGTGGTGTTATTCTTAATATGCATTTACATTGGAAAAAACATGAAACAGTCAAAGTCATATGCAAACCTGGTCAAGTCCAAGAATATGCCGATGAAATTGCAAGACTGAGTGGCGGCATCCCAATTCAGATAATTGCAGATGATACAATAGTTTTTTACAGAGGAAGGGATTATGTGCAACCCGAAATTATGTCTCCTATTGATACACTGTCAAAGAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTGGAAAAATCCAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026I24-W9iz2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U343499" ref_strand="+" ref_description="SGN-U343499        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>tccatcgatcaccaccataactccggtgagttttctctttctctctccatcaatcaccaccataactccggtgagttttctctttctctctcttccttcttcttcttcatatatcgactctttccctgcatctagatgccctccatccatgttcccctaagtccatggtaattcgaaaataggatgtgtgaatcggtgaaaatgttgagctcctcttttgatttgcttccttatgttaggattctcaatgattaactgctacccaactatgaatcccgaaacttggaatggtgcatgatcactgaatatgttgtgcacatgaagtgctcgacgaattgtcacactaaaattctcacaatgtggatcctatctgtcaggttaatcaagttgctgattcatttccttatttataaagtaatccagtttgggtttttaagtataccctgngaactatgagtcataat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-W9iz2/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="63252" stop="62189"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62952" g_stop="62489" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="464" r_length="464" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-U343499" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U343499" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62952" e_stop="62489"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCATCGATCACCACCATAACTCCGGTGAGTTTTCTCTTTCTCTCTCCATCAATCACCACCATAACTCCGGTGAGTTTTCTCTTTCTCTCTCTTCCTTCTTCTTCTTCATATATCGTCTCTTTCCCTGCATCTAGATGCCCTCCATCCATGTTCCCCTAGGTCCATGGTAATTCGAAAATAGGATGTGTGAATCGGTGAAAATGTTGAGCTCCTCTTTTGATTTGCTTCCTTATGTTAGGATTCTCAATGATTAACTGCTACCCAACTATGAATCCCGAAACTTGGAATGGTGCATGATCACTGAATATGTTGTGCACATGAAGTGCTCGACGAATTGTCACACTAAAATTCTCACAATGTGGATCCTATCTGTCAGGTTAATCAAGTTGCTGATTCATTTCCTTATTTATAAAGTAATCCAGTTTGGGTTTTTAAGTATACCCTGGGAACTATGAGTCATAAT</genome_strand>
        <mrna_strand>TCCATCGATCACCACCATAACTCCGGTGAGTTTTCTCTTTCTCTCTCCATCAATCACCACCATAACTCCGGTGAGTTTTCTCTTTCTCTCTCTTCCTTCTTCTTCTTCATATATCGACTCTTTCCCTGCATCTAGATGCCCTCCATCCATGTTCCCCTAAGTCCATGGTAATTCGAAAATAGGATGTGTGAATCGGTGAAAATGTTGAGCTCCTCTTTTGATTTGCTTCCTTATGTTAGGATTCTCAATGATTAACTGCTACCCAACTATGAATCCCGAAACTTGGAATGGTGCATGATCACTGAATATGTTGTGCACATGAAGTGCTCGACGAATTGTCACACTAAAATTCTCACAATGTGGATCCTATCTGTCAGGTTAATCAAGTTGCTGATTCATTTCCTTATTTATAAAGTAATCCAGTTTGGGTTTTTAAGTATACCCTGNGAACTATGAGTCATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026I24-W9iz2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326079" ref_strand="+" ref_description="SGN-U326079        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | mRNA capping enzyme family protein, contains Pfam PF03291: mRNA capping enzyme, large subunit | chr3:7220833-7224034 REVERSE | Aliases: F3H11.3(evalue: 2e-26, score=115) genbank/nr: gi|42565060|ref|NP_188701.2| mRNA capping enzyme family protein [Arabidopsis thaliana] >gi|9294344|dbj|BAB02241.1| mRNA cap methyltransferase-like protein [Arabidopsis thaliana] >gi|28973781|gb|AAO64206.1| unknown protein [Arabidopsis thaliana] >gi|29824183|gb|AAP04052.1| unknown protein [Arabidopsis thaliana] (evalue: 1e-24, score=115)">
      <seq>atgaatacatgaagaaacccgagtttattgagctaatgaggaggcttggtgcattaggtgatgggaaccaagaccaaagtactttatcaccggacgaatgggaggtagcctacctttatttggcatttgttctaaggaagcgagggcaaccggatcaaacacgaagaaaccctagacgagacaaaggcaagatgcaattgacaaaagacgatattgagaatgttaacggtgcagtgtagtgccgaaacgactgttatgggacatgaggaagtatctgaaatgaagaggaacaataaacacagtcccctcttcaagtcgataaatccagctgctaatcaattttgcagaacaaagactaattttcgcctttatcatttgttacatcatcaactcactgttgtactacaacataaaaaagttgatgtgggcaaaggtggctggttctaatgatactagtcaccagtgctatgttcgtttgtccacttgcaactttccatgtaactctctgtatcattacatatttatagtgagaatgagaaaatagccaaaaatatcaatctgggatattaagataaaaatgttttagagatctaagacaattgaacactgagtgactgatgtcaagatcaaatatatgttgtttgtttacttaaaaaagaaaaaaaaaactcgaggggggcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-W9iz2/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="76128" stop="74504"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75828" g_stop="75751" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75750" i_stop="75623" i_length="128">
            <donor d_prob="0.917" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75622" g_stop="75561" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="140" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75560" i_stop="75316" i_length="245">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75315" g_stop="74805" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="651" r_length="511" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="652" polyA_stop="668"/>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-U326079" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U326079" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75828" e_stop="75751"/>
          <exon e_start="75622" e_stop="75561"/>
          <exon e_start="75315" e_stop="74805"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATACATGAAGAAACCCGAGTTTATTGAGCTAATGAGGAGGCTTGGTGCATTAGGTGATGGGAACCAAGACCAAAGTAAGTTTTGGTCATCTTAGATGCTGAATATTAGTGCTGTGCTCTTTCATCCAAGTATTTTTGATATTTGATGCTTGTTACATATGCCTACCCAAAACTTGTGTTATGACATATTTTGCTAATTACAGGTACTTTATCACCGGACGAATGGGAGGTAGCCTACCTTTATTTGGCATTTGTTCTAAGGAAGGTATGAACGTACCTAATTCATGTTTTAATATTACCTGTTATTGTTAAACAGTAATCCACGACCCAAACTTTGGGGGTGGGGGGTGGGGTGGGGGGGCATGACTAGCATCCGACAGCATATTCTTTGTTGATAGAATGCTTCCCTTAACCTTGTTCAAAAATTACTTATGCAAAGCAGGCCTTTGCATGGATGATGGCATTGATTCTTGTGATTGTGATCTTGGTGAAATCTTGTTTATTTTGCAGCGAGGGCAACCGGATCAAACACGAAGAAACCCTAGACGAGACAAAGGCAAGATGCAACTGACAAAAGACGATATTGAGAATGTTAACGGTGCAGTGTAGTGCCGAAACGACTGTTATGGGACATGAGGAAGTATCTGAAATGAAGAGGAACAATAAACACAGTCCCCTCTTCAACTCGATAAATCCAGCTGCTAATCAATTTTGCAGAACAAAGACTAATTTTCGCCTTTATCATTTGTTACATCATCAACTCACTGTTGTACTACAACATAAAAAAGTTGATGTGGGCAAAGGTGGCTGGTTCTAATGATACTAGTCACCAGTGCTATGTTCGTTTGTCCACTTGCAACTTTCCATGTAACTCTCTGTATCATTACATATTTATAGTGAGAATGAGAAAATAGCCAAAAATATCAATCTGGGATATTAAGATAAAAATGTTTTAGAGATCTAAGACAATTGAACACTGAGTGACTGATGTCAAGATCAAATATATGTTGTTTGTTTACTT</genome_strand>
        <mrna_strand>ATGAATACATGAAGAAACCCGAGTTTATTGAGCTAATGAGGAGGCTTGGTGCATTAGGTGATGGGAACCAAGACCAAA................................................................................................................................GTACTTTATCACCGGACGAATGGGAGGTAGCCTACCTTTATTTGGCATTTGTTCTAAGGAAG.....................................................................................................................................................................................................................................................CGAGGGCAACCGGATCAAACACGAAGAAACCCTAGACGAGACAAAGGCAAGATGCAATTGACAAAAGACGATATTGAGAATGTTAACGGTGCAGTGTAGTGCCGAAACGACTGTTATGGGACATGAGGAAGTATCTGAAATGAAGAGGAACAATAAACACAGTCCCCTCTTCAAGTCGATAAATCCAGCTGCTAATCAATTTTGCAGAACAAAGACTAATTTTCGCCTTTATCATTTGTTACATCATCAACTCACTGTTGTACTACAACATAAAAAAGTTGATGTGGGCAAAGGTGGCTGGTTCTAATGATACTAGTCACCAGTGCTATGTTCGTTTGTCCACTTGCAACTTTCCATGTAACTCTCTGTATCATTACATATTTATAGTGAGAATGAGAAAATAGCCAAAAATATCAATCTGGGATATTAAGATAAAAATGTTTTAGAGATCTAAGACAATTGAACACTGAGTGACTGATGTCAAGATCAAATATATGTTGTTTGTTTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026I24-W9iz2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U338303" ref_strand="-" ref_description="SGN-U338303        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | mRNA capping enzyme family protein, contains Pfam PF03291: mRNA capping enzyme, large subunit | chr3:7220833-7224034 REVERSE | Aliases: F3H11.3(evalue: 5e-10, score=62.4) genbank/nr: SocE(evalue: 2e-12, score=76.6)">
      <seq>tactttatcaccagatgaatgggaggtagcctacctttatttggcattcgttctaaggaagcgagggcaaccggatcaaacacgaagaaaccctaggcgagtcaaaggcaagatgcaatcgacaaaagccgatattgagaatgttaacggtgcagtgtagtgcggaaaggactgttatgggacatgaggaagtatatgaaatgaagaggaacaataaacacagtcccctcttcaagtcgataaatccaggggataatcaattttgcagatcaaagattaattttcgcctttatcatttgttacatcatcaactccctgtcgtagtacaacataaaaaagttgaattgggcaaaggcggctggttctaacgatagtagtctccagggttatgttggtttgtccactggcaactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-W9iz2/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="75921" stop="74664"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75621" g_stop="75561" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75560" i_stop="75316" i_length="245">
            <donor d_prob="0.991" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75315" g_stop="74964" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="413" r_length="352" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-U338303" ref_strand="-">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U338303" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="75621" e_stop="75561"/>
          <exon e_start="75315" e_stop="74964"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTTTATCACCGGACGAATGGGAGGTAGCCTACCTTTATTTGGCATTTGTTCTAAGGAAGGTATGAACGTACCTAATTCATGTTTTAATATTACCTGTTATTGTTAAACAGTAATCCACGACCCAAACTTTGGGGGTGGGGGGTGGGGTGGGGGGGCATGACTAGCATCCGACAGCATATTCTTTGTTGATAGAATGCTTCCCTTAACCTTGTTCAAAAATTACTTATGCAAAGCAGGCCTTTGCATGGATGATGGCATTGATTCTTGTGATTGTGATCTTGGTGAAATCTTGTTTATTTTGCAGCGAGGGCAACCGGATCAAACACGAAGAAACCCTAGACGAGACAAAGGCAAGATGCAACTGACAAAAGACGATATTGAGAATGTTAACGGTGCAGTGTAGTGCCGAAACGACTGTTATGGGACATGAGGAAGTATCTGAAATGAAGAGGAACAATAAACACAGTCCCCTCTTCAACTCGATAAATCCAGCTGCTAATCAATTTTGCAGAACAAAGACTAATTTTCGCCTTTATCATTTGTTACATCATCAACTCACTGTTGTACTACAACATAAAAAAGTTGATGTGGGCAAAGGTGGCTGGTTCTAATGATACTAGTCACCAGTGCTATGTTCGTTTGTCCACTTGCAACTT</genome_strand>
        <mrna_strand>TACTTTATCACCAGATGAATGGGAGGTAGCCTACCTTTATTTGGCATTCGTTCTAAGGAAG.....................................................................................................................................................................................................................................................CGAGGGCAACCGGATCAAACACGAAGAAACCCTAGGCGAGTCAAAGGCAAGATGCAATCGACAAAAGCCGATATTGAGAATGTTAACGGTGCAGTGTAGTGCGGAAAGGACTGTTATGGGACATGAGGAAGTATATGAAATGAAGAGGAACAATAAACACAGTCCCCTCTTCAAGTCGATAAATCCAGGGGATAATCAATTTTGCAGATCAAAGATTAATTTTCGCCTTTATCATTTGTTACATCATCAACTCCCTGTCGTAGTACAACATAAAAAAGTTGAATTGGGCAAAGGCGGCTGGTTCTAACGATAGTAGTCTCCAGGGTTATGTTGGTTTGTCCACTGGCAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026I24-W9iz2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U332317" ref_strand="+" ref_description="SGN-U332317        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | mRNA capping enzyme family protein, contains Pfam PF03291: mRNA capping enzyme, large subunit | chr3:7220833-7224034 REVERSE | Aliases: F3H11.3(evalue: 1e-08, score=40.8) genbank/nr: gi|42565060|ref|NP_188701.2| mRNA capping enzyme family protein [Arabidopsis thaliana] >gi|9294344|dbj|BAB02241.1| mRNA cap methyltransferase-like protein [Arabidopsis thaliana] >gi|28973781|gb|AAO64206.1| unknown protein [Arabidopsis thaliana] >gi|29824183|gb|AAP04052.1| unknown protein [Arabidopsis thaliana] (evalue: 1e-06, score=40.8)">
      <seq>ggataaccctatgttgattttcaggatttaataagaggataacctatgttgattttcaggatttaataagaggacaaccctatgttgatttacaggatttaataggaggaggataacattccaagcatataatacacagataatcttttgtaagtcgtgttaagatgggaattctccacctgttgatatatgtacataaactatgtctgatcaaaacttaataaatgagttttgagccccaaagtagtgtttggtttcattcacagcacatgcaaaatccataaataatagagtaagaacagttgttcagtctgctagaacttgcaaatcatggaggctaaaagacaaataaaaatccttcaatgtgcatgattctaaacaagtaaagcaaaaactgaaaaccatacatgcctactagctataaaacaaataaattattcaaatggaagcgctgagatttgtactttgaaactaaaatcgacaaaggagcgcatacacactttaatcaataacaataatactgaaggacacagctaagatatataggaaggcataaatctgtacacacctccagatggaacttgtatttgatgccaaaaggatttgaagatttgaatttctgcaacaatggaaaatcttaatatacaactacttatagtagtaacaacagaaatcagaaaattgctagaaaatgataacacaagttaccttctctgaaaattcttcatcaaaacgtatccaatagacactattaccaaaggctagcccctcagctgcacttccaaagacaaacaggaaccatatatncacaaatctttaatctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-W9iz2/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="+" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="76632" stop="78056"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76932" g_stop="77756" g_length="825"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="825" r_length="825" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="+" ref_id="SGN-U332317" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>825</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U332317" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76932" e_stop="77756"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATAACCCTATGTTGATTTTCAGGATTTAATAAGAGGATAACCTATGTTGATTTTCAGGATTTAATAAGAGGACAACCCTATGTTGATTTACAGGATTTAATAGGAGGAGGATAACATTCCAAGCATATAATACACAGATAATCTTTTGTAAGTCGTGTTAAGATGGGAATTCTCCACCTGTTGATATATGTACATAAACTATGTCTGATCAAAACTTAATAAATGAGTTTTGAGCCCCAAAGTAGTGTTTGGTTTCATTCACAGCACATGCAAAATCCATAAATAATAGAGTAAGAACAGTTGTTCAGTCTGCTAGAACTTGCAAATCATGGAGGCTAAAAGACAAATAAAAATCCTTCAATGTGCATGATTCTAAACAAGTAAAGCAAAAACTGAAAACCATACATGCCTACTAGCTATAAAACAAATAAATTATTCAAATGGAAGCGCTGAGATTTGTACTTTGAAACTAAAATCGACAAAGGAGCGCATACACACTTTAATCAATAACAATAATACTGAAGGACACAGCTAAGATATATAGGAAGGCATAAATCTGTACACACCTCCAGATGGAACTTGTATTTGATGCCAAAAGGATTTGAAGATTTGAATTTCTGCAACAATGGAAAATCTTAATATACAACTACTTATAGTAGTAACAACAGAAATCAGAAAATTGCTAGAAAATGATAACACAAGTTACCTTCTCTGAAAATTCTTCATCAAAACGTATCCAATAGACACTATTACCAAAGGCTAGCCCCTCAGCTGCACTTCCAAAGACAAACAGGAACCATATATCAACAAATCTTTAATCTGG</genome_strand>
        <mrna_strand>GGATAACCCTATGTTGATTTTCAGGATTTAATAAGAGGATAACCTATGTTGATTTTCAGGATTTAATAAGAGGACAACCCTATGTTGATTTACAGGATTTAATAGGAGGAGGATAACATTCCAAGCATATAATACACAGATAATCTTTTGTAAGTCGTGTTAAGATGGGAATTCTCCACCTGTTGATATATGTACATAAACTATGTCTGATCAAAACTTAATAAATGAGTTTTGAGCCCCAAAGTAGTGTTTGGTTTCATTCACAGCACATGCAAAATCCATAAATAATAGAGTAAGAACAGTTGTTCAGTCTGCTAGAACTTGCAAATCATGGAGGCTAAAAGACAAATAAAAATCCTTCAATGTGCATGATTCTAAACAAGTAAAGCAAAAACTGAAAACCATACATGCCTACTAGCTATAAAACAAATAAATTATTCAAATGGAAGCGCTGAGATTTGTACTTTGAAACTAAAATCGACAAAGGAGCGCATACACACTTTAATCAATAACAATAATACTGAAGGACACAGCTAAGATATATAGGAAGGCATAAATCTGTACACACCTCCAGATGGAACTTGTATTTGATGCCAAAAGGATTTGAAGATTTGAATTTCTGCAACAATGGAAAATCTTAATATACAACTACTTATAGTAGTAACAACAGAAATCAGAAAATTGCTAGAAAATGATAACACAAGTTACCTTCTCTGAAAATTCTTCATCAAAACGTATCCAATAGACACTATTACCAAAGGCTAGCCCCTCAGCTGCACTTCCAAAGACAAACAGGAACCATATATNCACAAATCTTTAATCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026I24-W9iz2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U341332" ref_strand="+" ref_description="SGN-U341332        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | mRNA capping enzyme family protein, contains Pfam PF03291: mRNA capping enzyme, large subunit | chr3:7220833-7224034 REVERSE | Aliases: F3H11.3(evalue: 5e-19, score=91.7) genbank/nr: gi|42565060|ref|NP_188701.2| mRNA capping enzyme family protein [Arabidopsis thaliana] >gi|9294344|dbj|BAB02241.1| mRNA cap methyltransferase-like protein [Arabidopsis thaliana] >gi|28973781|gb|AAO64206.1| unknown protein [Arabidopsis thaliana] >gi|29824183|gb|AAP04052.1| unknown protein [Arabidopsis thaliana] (evalue: 4e-17, score=91.7)">
      <seq>ggcccccctcgagactagttctctcctatagaggtacatgcttatatgaattgaatcacttttatataactgcatctctttctatgagcattatgaggtgttttggatatgttgatgccctcgtaaaatatctcatctcaagctttcgtgtttttggttcctggctatgttaaatgtgtctagcctatagaggtacatgcttatatgaattgaatcacttttatataactgcatctctttctatgagcattatgaggtgttttggatatgttgatgccctcgtaaaatatctcatctcaagctttcgtgtttttggttcctggctatgttaaatgtgtcatttgtcctattttagtttttgtccagcttttactttctattttgccaatgaaaacttgaaaattcattagtgtgttcagaagcttctccaaactagctcactgaaaaaggtgtataatccacatctttcttaaattttgaaaaaaactgtaaaaactgaagtagaggtttatgaaagatgtttgtacagtgtcctcctaattggatgcctctgcctagtatctggagaagcgacagccctttatccagaatttatgtttgtcctgggtggcctcttacagattctaagctatgaaaaattgaaatttgcagtttgctatgcattattcgtggtctactgaggcacgtgcacgacgtgcactggccaacatctcagttttactccgacccggaggaatatttattggaacaatgccagatgccaatgtcatcgtcaagaagtatagagaaagttcaactttactcaattctgccctgtttgtccctgttgaatctataaatgttatgactctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-W9iz2/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="79722" stop="78284"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79411" g_stop="78584" g_length="828"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="852" r_length="828" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-U341332" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>828</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U341332" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79411" e_stop="78584"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTATAGAGGTACATGCTTATATGAATTGAATCACTTTTATATAACTGCATCTCTTTCTATGAGCATTATGAGGTGTTTTGGATATGTTGATGCCCTCGTAAAATATCTCATCTCAAGCTTTCGTGTTTTTGGTTCCTGGCTATGTTAAATGTGTCTAGCCTATAGAGGTACATGCTTATATGAATTGAATCACTTTTATATAACTGCATCTCTTTCTATGAGCATTATGAGGTGTTTTGGATATGTTGATGCCCTCGTAAAATATCTCATCTCAAGCTTTCGTGTTTTTGGTTCCTGGCTATGTTAAATGTGTCATTTGTCCTATTTTAGTTTTTGTCCAGCTTTTACTTTCTATTTTGCCAATGAAAACTTGAAAATTCATTAGTGTGTTCAGAAGCTTCTCCAAACTAGCTCACTGAAAAAGGTGTATAATCCACATCTTTCTTAAATTTTGAAAAAAACTGTAAAAACTGAAGTAGAGGTTTATGAAAGATGTTTGTACAGTGTCCTCCTAATTGGATGCCTCTGCCTAGTATCTGGAGAAGCGACAGCCCTTTATCCAGAATTTATGTTTGTCCTGGGTGGCCTCTTACAGATTCTAAGCTATGAAAAATTGAAATTTGCAGTTTGCTATGCATTATTCGTGGTCTACTGAGGCACGTGCACGACGTGCACTGGCCAACATCTCAGTTTTACTCCGACCCGGAGGAATATTTATTGGAACAATGCCAGATGCCAATGTCATCGTCAAGAAGTATAGAGAAGGTTCAACTTTACTCAATTCTGCCCTGTTTGTCCCTGTTGAATCTATAAATGTTATGACTCTG</genome_strand>
        <mrna_strand>CCTATAGAGGTACATGCTTATATGAATTGAATCACTTTTATATAACTGCATCTCTTTCTATGAGCATTATGAGGTGTTTTGGATATGTTGATGCCCTCGTAAAATATCTCATCTCAAGCTTTCGTGTTTTTGGTTCCTGGCTATGTTAAATGTGTCTAGCCTATAGAGGTACATGCTTATATGAATTGAATCACTTTTATATAACTGCATCTCTTTCTATGAGCATTATGAGGTGTTTTGGATATGTTGATGCCCTCGTAAAATATCTCATCTCAAGCTTTCGTGTTTTTGGTTCCTGGCTATGTTAAATGTGTCATTTGTCCTATTTTAGTTTTTGTCCAGCTTTTACTTTCTATTTTGCCAATGAAAACTTGAAAATTCATTAGTGTGTTCAGAAGCTTCTCCAAACTAGCTCACTGAAAAAGGTGTATAATCCACATCTTTCTTAAATTTTGAAAAAAACTGTAAAAACTGAAGTAGAGGTTTATGAAAGATGTTTGTACAGTGTCCTCCTAATTGGATGCCTCTGCCTAGTATCTGGAGAAGCGACAGCCCTTTATCCAGAATTTATGTTTGTCCTGGGTGGCCTCTTACAGATTCTAAGCTATGAAAAATTGAAATTTGCAGTTTGCTATGCATTATTCGTGGTCTACTGAGGCACGTGCACGACGTGCACTGGCCAACATCTCAGTTTTACTCCGACCCGGAGGAATATTTATTGGAACAATGCCAGATGCCAATGTCATCGTCAAGAAGTATAGAGAAAGTTCAACTTTACTCAATTCTGCCCTGTTTGTCCCTGTTGAATCTATAAATGTTATGACTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026I24-W9iz2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U332557" ref_strand="+" ref_description="SGN-U332557        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | mRNA capping enzyme family protein, contains Pfam PF03291: mRNA capping enzyme, large subunit | chr3:7220833-7224034 REVERSE | Aliases: F3H11.3(evalue: 2e-68, score=255) genbank/nr: gi|42565060|ref|NP_188701.2| mRNA capping enzyme family protein [Arabidopsis thaliana] >gi|9294344|dbj|BAB02241.1| mRNA cap methyltransferase-like protein [Arabidopsis thaliana] >gi|28973781|gb|AAO64206.1| unknown protein [Arabidopsis thaliana] >gi|29824183|gb|AAP04052.1| unknown protein [Arabidopsis thaliana] (evalue: 1e-66, score=255)">
      <seq>tttcccttcactaattccttcttcttctctcactgttttatagcttagtgttgcagatttgttcataatctatactgattgtgcttcaaattatgaagagaagttactcaggatctccatcttcgagttcttatggacctccacaatccaaatttaagcataacccagaagggtagttttttaactgctaggggcgatgtattatcccataaataattgaacttctgatgctaaactttaggaagttgtaacctttttggataaagaagccagaagttggttttctattgcggtttgattaaaagtttgaactggtgtcaggcgacactcattttctggaagatgagagtacaaaaatctttgccaggaaagtggctgatcattacagtgcgaggaccaatcaaactcttgaagagcgcgaagcaagtcctatcatccatttaaagaaacttaataattggatcaagagtgtcttgattcagctttatacgaaaagaggggatgcagttcttgatcttgcttgtgggaagggtggcgatctcatcaaatgggataaagcaaagattggatattacgttggtattgatatcgccgatggttcaatagaagactgccggactcgttacaatggtgaggcagatcatcatcagcggcgcaaaaagttctcatttcctgccagactcctgtgtggagattgttatgaggttcgcttggatagggttttagcagatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-W9iz2/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="82831" stop="79366"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82531" g_stop="82361" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82360" i_stop="81530" i_length="831">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81529" g_stop="81240" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="461" r_length="290" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81239" i_stop="81168" i_length="72">
            <donor d_prob="0.802" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81167" g_stop="81099" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="530" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81098" i_stop="80984" i_length="115">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80983" g_stop="80912" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="602" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80911" i_stop="80080" i_length="832">
            <donor d_prob="0.841" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80079" g_stop="79978" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="603" r_stop="704" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="79977" i_stop="79697" i_length="281">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="79696" g_stop="79666" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="705" r_stop="735" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-U332557" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U332557" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82531" e_stop="82361"/>
          <exon e_start="81529" e_stop="81240"/>
          <exon e_start="81167" e_stop="81099"/>
          <exon e_start="80983" e_stop="80912"/>
          <exon e_start="80079" e_stop="79978"/>
          <exon e_start="79696" e_stop="79666"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCCTTCACTAATTCCTTCTTCTTCTCTCACTGTTTTATAGCTTAGTGTTGCAGATTTGTTCATAATCTATACTGATTGTGCTTCAAATTATGAAGAGAAGTTACTCAGGATCTCCATCTTCGAGTTCTTATGGACCTCCACAATCCAAATTTAAGCATAACCCAGAAGGTATATTGTCATCTTCTTTGTTTTTATTATCTTTTCTTGGAATTATATGGATAGAGCATGCTGAAGTTAGAGACTTTACTTGTATTTTAGCTAAATCCAGATGGTAATTTTTTGTTTTCAAAAGACCCCATTTGGGATTTACCTAATTTGGTGTAGATGGATATATGCATATTCGTTTTGTTTATTGAATGAGTACATGTAAAATTAGAAACTTTACTTGTGCATAAGCACAACCCAGAAGGGAATTTTGTAATATTTACTTGTAAGACAAATTCACGCATTTCTTTGTATAGATAGATATGAATACAACATATTTGTTCATTGCTGTGTTTGTTCTTGTTTTATTAACTGTGGTGTCGGGGTTAGCTTGGGCGTAAATTGACGTGATACTAGTCACTGGCTACCAGCACGTGTAATAGGTATCGGGAAATTCCATGTGATACTAGCCACCGGCTACCAGTAACGTGTAACAGGTATCAGGTGACTCCGTTGCTAGGACAGATGGAAAGAAATCACCTAGTGTTTTTTTTTATCTGTAATGAGATTGAGACCTTTCAGTTTCACTTCATTGACAACTAGGCCACACTGTCGGATGCCCGTGAAGTTAGAGAACTACTGCTTTTTTTAAAGCATAACCTAGAAGAGATTTTTCTCATGTTTTTATTTAATAGTAACTGCTTTTGATTTTCATTATCTGTCACCGGTATAGAAATAGATATAACATATTTGTTCATTGTTGCATTAGTTAGTAATAAGAAGGATACTGTTATTTTCGCTGCTTAAGTGTTCTGCTACAATTATTGTAATGTCTGAATTTTATTTACGATGCAGGGTAGTTTTTTAACTGCTAGGGGCGATGTATTATCCCATAAATAATTGAACTTCTGATGCTAAACTTTAGGAAGTTGTAACCTTTTTGGATAAAGAAGCCAGAAGTTGGTTTTCTATTGCGGTTTGATTAAAAGTTTGAACTGGTGTCAGGCGACACTCATTTTCTGGAAGATGAGAGTACAAAAATCTTTGCCAGGAAAGTGGCTGATCATTACAGTGCGAGGACCAATCAAACTCTTGAAGAGCGCGAAGCAAGTCCTATCATCCATTTAAAGAAACTTAATAATTGGGTATGTCTTTTTTATTCATAGGCGGGGTTATTCTGCGTAGTCCATTGCTAATGAGGCTTTCTGGCTTGTTAGATCAAGAGTGTCTTGATTCAGCTTTATACGAAAAGAGGGGATGCAGTTCTTGATCTTGCTTGTGGGAAGGTACTTTTTCCTTATTTTACACCCCAATTATCTGGCAGCAGCGAGCTGTTAGAATTTCTAGGTGGTAATTAACCAAGTAGCCATGCATCTTATTCTCACTTTCTGTTTGAACCAGGGTGGCGATCTCATCAAATGGGATAAAGCAAAGATTGGATATTACGTTGGTATTGATATCGCCGATGGTTCAGTAAGTTCCTGCTGGATGAATACATTTTTTGGTGTTTTTGTGCTTGCCACTGCAAGTCAGATCTCCCTTTCAGCAAGATATTTACATGCTTAGCAATTTGTATGGCTTTCTAGAAGATGCTTTTTATCAGTACTTAGATATTTTGCAGTTAAACATTATTAAATGTTATTAACCGAACATCTGAAGGTTTACTATGCGATTCAGCTGTTAGAGTGGTGCTTGCAGTGAAGTATACTATAACAAGTATTCTAGGGGGCCGTTTGGCCATGTGAGATGAAATCATATGTGATGAAGTTGAAGTTTTGTTTGGACATGCAACTTGGTTGTGGTTAAAACATAAAAAACTTTCAAAACTACCCCAATTTTTTTTATAGTATCTTACTGGATAAGTTGAAGTTTATAACAAAAGTTTAATACACTATAACAAAGTTATTGAGTTGCTATTTAACTTCAGGGGAATGTTGATCAAATTTTTGTCTGTCTTTTAATTGGAGGTTAATCTGGATATTAACTCAAAGAGAAGGCCACAAAAGCTTTCTTGAATTCTAACTTGTTGACATCAATACTAAATGATTCAGGCATAGGAGATGCTGGCATTTCTTAATTGAGTCCTCCATTCTGTAGATTTACATGCTAGGTTTCTTCCTTTATTTGCGGGAATGAATATCCATCTCATAGAATGTTATATTACTCTATTTTTCTTTTGACCAAGTAAAATAATTATATTCCTCTCTATATTTATGTTAAATTCTAGTTTTTGAGGTCTATTTTTATTTTCTATTGTATTTGAGTGCTACCCTGACTTTTGATATTATTCTTAAATTATGTAAAGATAGAAGACTGCCGGACTCGTTACAATGGTGAGGCAGATCATCATCAGCGGCGCAAAAAGTTCTCATTTCCTGCCAGACTCCTGTGTGGAGATTGTTATGAGGTAAATCAGTCACATGATTGATCAAGTTTTCTCATTCTTTCAGATGGAACTGAAATTTTTTTATCTTTTTGTTGCTTTTTTTTTTTCGTGTTGTAAAGATTATTATGGATGTATGATGAATCATTTACTAGACGTACAATGACCTTAGATATCATGTCATTAGCTGGATGTGTAGTGATGATCAATATATGGTTAAATCCACTGATAATCCAAACAGCTGCATGCTTTTATTGAAACATCAAGGCGGATGATTCTACTGATATCTTGTGTGGGAATTTCAGGTTCGCTTGGATAGGGTTTTAGCAGATGATG</genome_strand>
        <mrna_strand>TTTCCCTTCACTAATTCCTTCTTCTTCTCTCACTGTTTTATAGCTTAGTGTTGCAGATTTGTTCATAATCTATACTGATTGTGCTTCAAATTATGAAGAGAAGTTACTCAGGATCTCCATCTTCGAGTTCTTATGGACCTCCACAATCCAAATTTAAGCATAACCCAGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAGTTTTTTAACTGCTAGGGGCGATGTATTATCCCATAAATAATTGAACTTCTGATGCTAAACTTTAGGAAGTTGTAACCTTTTTGGATAAAGAAGCCAGAAGTTGGTTTTCTATTGCGGTTTGATTAAAAGTTTGAACTGGTGTCAGGCGACACTCATTTTCTGGAAGATGAGAGTACAAAAATCTTTGCCAGGAAAGTGGCTGATCATTACAGTGCGAGGACCAATCAAACTCTTGAAGAGCGCGAAGCAAGTCCTATCATCCATTTAAAGAAACTTAATAATTGG........................................................................ATCAAGAGTGTCTTGATTCAGCTTTATACGAAAAGAGGGGATGCAGTTCTTGATCTTGCTTGTGGGAAG...................................................................................................................GGTGGCGATCTCATCAAATGGGATAAAGCAAAGATTGGATATTACGTTGGTATTGATATCGCCGATGGTTCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGAAGACTGCCGGACTCGTTACAATGGTGAGGCAGATCATCATCAGCGGCGCAAAAAGTTCTCATTTCCTGCCAGACTCCTGTGTGGAGATTGTTATGAG.........................................................................................................................................................................................................................................................................................GTTCGCTTGGATAGGGTTTTAGCAGATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026I24-W9iz2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U323767" ref_strand="+" ref_description="SGN-U323767        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: | Symbol: None | LMBR1 integral membrane family protein, contains Pfam PF04791: LMBR1-like conserved region | chr5:186693-190456 FORWARD | Aliases: T10O8.170, T10O8_170(evalue: 1e-121, score=380) genbank/nr: gi|15240980|ref|NP_195766.1| expressed protein [Arabidopsis thaliana] gi|11281130|pir||T48168 hypothetical protein T10O8.170 - Arabidopsis thaliana gi|7320724|emb|CAB81929.1| putative protein [Arabidopsis thaliana] gi|18176296|gb|AAL60018.1| unknown protein [Arabidopsis thaliana] gi|20465353|gb|AAM20080.1| unknown protein [Arabidopsis thaliana](evalue: 8e-120, score=380)">
      <seq>tgttggcattgcttgtctccctttgggacttatattttcgttcatcaggcgtccaaaggctgttattacacggtcacagtatatcaaggaagctaccgagcttggtaaaaaagcgaaagatgaagaaagcaactgatgcacttcatcaagaagaaaggagcgggagtaagggaagaaaatggcggaagaatgtaaaggcagtcgaaaaggaggtgcttcttcttgaagatgatgtcaaggcgctagaggaaatgtatcctcaaggtgaaaaggctgagactgcttgggcaatgacagttctaggttatttggcaaaactcatcctaggtgttttagggctgattgtctctgtagcttgggttgcccatatcgtgatatatcttctgattgatcctccactttcttctttcctcaatgaggttttcatcaaactagatgatatttggggtctcttgggcactgcagcttttgcatttttttgcttctaccttctgcttgcagtgattgctggagctatgatgattggcttgagattagtttttgttacgattcacccaatgaagtggggagctacgctcatgaactcctttcttttcaatgtgggccttattcttctttgctccatcagtgtcattcagttctgcgccacggcctttgcatactatgctcaagccactgcagctcaagaaatatttggtcacaatctgcaatctcttcgtggaattaagtatctatacaagtacaacgtgtttcaaattggattcattgttttagctggtctgacatttgtttactatgctgcctttgggtggagaaggaaaaagcctagtgggaggttccagctctccagttaaaggttttgattggatagcagtgcacgtatctgaccgtatttgagacttactctggtctatcactaatgttgaggctttgaactgtggtgtatgttgcctagttttgtttcatattattggaggaggcaacaccactaaatttgatttctacagtggaagttggatgttggcgactctgtactactgctgctgctgcttgccactgttcctgctgctgttaatttagttttttccttaattccaccttctgtatgtatcatttgtttggtaatgtttaatcatttgtttgggcatgtcgtcatctaaatgcttggtttgagatttgtccttgatgtatcatatagtcattatataccaaaatttcttggatgcttgtatatttactgtgaactcttttatatacgtttcgagcctaggaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-W9iz2/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="88418" stop="84081"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88118" g_stop="88031" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88030" i_stop="87916" i_length="115">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87915" g_stop="87793" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="209" r_length="121" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87792" i_stop="86688" i_length="1105">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86687" g_stop="86625" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="272" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86624" i_stop="86521" i_length="104">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86520" g_stop="86456" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="337" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86455" i_stop="86349" i_length="107">
            <donor d_prob="0.801" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="86348" g_stop="86239" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="447" r_length="110" r_score="0.991"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="86238" i_stop="86147" i_length="92">
            <donor d_prob="0.936" d_score="0.98"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="86146" g_stop="86032" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="562" r_length="115" r_score="0.983"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="86031" i_stop="85925" i_length="107">
            <donor d_prob="0.695" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="85924" g_stop="85859" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="628" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="85858" i_stop="85197" i_length="662">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.851" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="85196" g_stop="85086" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="629" r_stop="739" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="85085" i_stop="84997" i_length="89">
            <donor d_prob="0.855" d_score="1.00"/>
            <acceptor a_prob="0.899" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="84996" g_stop="84930" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="740" r_stop="806" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="84929" i_stop="84849" i_length="81">
            <donor d_prob="0.843" d_score="1.00"/>
            <acceptor a_prob="0.919" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="84848" g_stop="84382" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="807" r_stop="1273" r_length="467" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1274" polyA_stop="1304"/>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-U323767" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>1275</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U323767" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88118" e_stop="88031"/>
          <exon e_start="87915" e_stop="87793"/>
          <exon e_start="86687" e_stop="86625"/>
          <exon e_start="86520" e_stop="86456"/>
          <exon e_start="86348" e_stop="86239"/>
          <exon e_start="86146" e_stop="86032"/>
          <exon e_start="85924" e_stop="85859"/>
          <exon e_start="85196" e_stop="85086"/>
          <exon e_start="84996" e_stop="84930"/>
          <exon e_start="84848" e_stop="84382"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTGGCATTGCTTGTCTCCCGTTGGGACTTATATTTTCGTTCATCAGGCGTCCAAAGGCTGTTATTACACGGTCACAGTATATCAAGGTATTTTCTTCTGTTAGAAGCTCTTTGCATATGATCCTGATCAGATGTTTAAAATAAAATAAAGGTATATACGCTGGTGTCATGGCTCATGATGCTTAACTTTGATTTTGTATAGGAAGCTACCGAGCTTGGTAAAAGAGCGAAAGAATTGAAGAAAGCAACTGATGCACTTCATCAAGAAGAAAGGAGCGGGAGTAAGGGAAGAAAATGGCGGAAGAATGTGAAGGCAGTCGAAAAGGTATATCTTGTTTCTCATCATGGTTTCTTTGAATGTTTTTTTCATTTTAGCACTATGTTACATATAAGGTGAACTTAAAAATGGAATGTTTTAGAGCCACTCGAGGGTGTGGTTAGTGGTCAATGAAGTGGAGGAGAACCTAAGGTCTTAGGTCTAAATTCTTGGCAAAAGAATAGGCAATTGTCTCTTATGCGTAAGCCTTGGTGGATAGAATTACCAAGGCTGGTGGGAGGTAAAAGGTACCTGGTGGAATAGTCAACATGCAAGCAAGTTGGCTGGGATATCTTCATCCCAACAGAAGGAATGTTTTAGACAATAAACAAAAATATATAAGCAAATCGCACTGTCATGTTGATCATTGCATTTCATTGCATAATTATTATTGTAGAATATCTAGAAGTAAAGGTACATTTGTCTTTGCACCCAACAATGTGGCCTAGTGGTCAATGAAGTTGGTTAGAATCATGAGGTCTGAGTTCAATGTTCAAATCCCAACGGAGGCAAAATCACTAGGCAATTTTTTCTATTTGTCCAAGTCCTCTTGATGGATAGAGGTACCTGCTACCCCGTAGAATTAGTCGAGGTGTGCACATGTTGCCCAGACCACCATGGTCGTCCAAAAAAGATACTTGTGTCTTTTTTAGTAAATGAAACATGCTATAAATATCATCTGTTATGTTAAGTAGGAAAAAGAGGTGGGATGTAAGGTGATAATCATTGTTCAAGTGGCCATTATACATTTTATGAAATTTGAAAATAAAAACAAATAAATAGAACTTTTTATAAGTTCAGCTTGATGCTTCTCCTGCAAAGGCATGAATAAACCATGCTATGCTATTTTAATATGATCAATTGATGTTCATAACCTGTGTATGCAAGTGAAACTCCTCTTGATATGCATGATCCATTGTCCTCGAAATTCTACATTGAAGTTATTGATGATTTTATCTCAGACCTCATGTCAATTTTATCTCTCTTATCTTAGGATGTTGGATGAAGATTCTGTTTTCTTGTCAGATTAATATATCAAGAAATGAATAAACTGAAAAGTACTGGTTTGTTTTTATGTTAGTGTGATAAAATAATTTTTTGTTTTACCTTGCAGGAGGTGCTTCTTCTTGAAGACGATGTCAAGGCGCTAGAGGAAATGTATCCTCAAGGTGAAAAGGTAATGAGATGTGCTTTTATACTTGGCCGCCTAAAATCTTATTTTTCACACCTTGCCAAAGTAATTTTGTTGAGCAAACTTGTTTGATGGCCTCTTTTTGGCAGGCTGAGACTGCTTGGGCAATGACAGTTCTAGGTTATTTGGCAAAACTCATCCTAGGTGTTTTAGGGTATGTGGGAATGTGAAGATATTTTAATTTCCACTAGTTTTTTGGAATAATTTGACATAAATAGATGGCAAATAGTGAATCTGTATTTTTTTGGTTCATGTAAACAGGCTGATTGTCTCTGTAGCTTGGGTTGCCCATATCGTGATATATCTTCTGATTGATCCTCCACTTTCTTCTTTCCTTAATGAGGTTTTCATCAAACTAGATGATATTTGGGGTACCTTCAACCTCTCTCTCTCCTGCCTTATTTGCGATGTATGGTGACTGATACATGAAATGTGATGGTATTTTTTCCCTTTTTTTCTCCAGGTCTCTTGGGCACTGCAGCTTTTGCATTTTTTTGCTTCTACCTTCTGCTTGCTGTGATTGCCGGAGCTATGATGATTGGCTTGAGATTAGTTTTTGTTACGATTCACCCAATGAAGTAAATTTCTTCTGCTGTTTGAAATTATACTTTATTGAATTTGTTTGCCACCTGCTTTGCTCCTCTGTCTCCCCTGACTCACTGCTGTGCTACACCACTATTTACAGGTGGGGAGCTACGCTCATGAACTCCTTTCTTTTCAATGTGGGCCTTATTCTTCTTTGCTCCATCAGGTAGGATTAACTCTACACTGTTCTATTTTTCTTAATGATGAATATCTGAAGGACAAATGCTTAGACCACTGATATTGGGACACTTTGGGTTGTCCATGCAAATAGTGAAGTATTTAATGTACCAGCTAGGATTCAATTTATTGGGTAGTTGAGTGGTGATGTTTGGCTGAAGTGAGGCATGAAGCAACATGCTAAATCAGTTCCTCCAGGTTATGGCCTGATACTACAAAAGAAGCAGCCTGCTTCTTATACGGTCTTGATCTCACTGGGCAATTATTGTTGTAGCTTTGATCTTACTTGGGGGTATTGTGGTTCTAGACCATTTACTAGTTAAACCATATGTAGGCAACTACGGAAAGGAAAGCAAGGATTCCACTGACAGCCGACAGGATATCCTGAACTTCCTTGCTGAATTTATGAGGCATTTGTTATAAGGACGTGCTTGCCCCCTTATTATTTCTAAATAAAAAACAGATAGCTTCATCTACTTTGTTGGATAATGGTTCCATGTATTAAATACTTTGCTGAGGTGATAGGTGGTATATAGAACATGAAATTCGAGGATGACCAATCTGCAGTATTTGGGTTGATAACCACCTTTCTTCTGCTTCCACCTGGTGTAAAAGTTCGGTAGTATGAGCTTTTGTTTTCTGCGCTTGCAGTGTCATTCAGTTCTGCGCCACGGCCTTTGCATACTATGCTCAAGCCACTGCAGCTCAAGAAATATTTGGTCACAATCTGCAATCTCTTCGTGGAATTAAGTATCTATACAAGTAAGTTCCTGTTGTTTGTAGATATTCACCAAGAACTGATTTTCTGGCTGCAAGAATCATGTTATGAACGGGGAAAGATGTCTTTGCAGGTACAACGTGTTTCAAATTGGATTCATTGTTTTAGCTGGTCTGACATTTGTTTACTATGCTGCCTTTGTAAGTCTCTGTTACTGTCTTGACATCTTAAATCCTTGCCTTTAAGATGGAGGAGAAATTAAACAATTTTCAACTTTGCAGGGGTGGAGAAGGAAAAAGCCTAGTGGGAGGTTCCAGCTCTCCAGTTAAAGGTTTTGATTGGATAGCAGTGCACGTATCTGACCGTATTTGAGACTTACTCTGGTCTATCACTAATGTTGAGGCTTTGAACTGTGGTGTATGTTGCCTAGTTTTGTTTCATATTATTGGAGGAGGCAACACCACTAAATTTGATTTCTACAGTGGAAGTTGGATGTTGGCGACTCTGTACTACTGCTGCTGCTGCTTGCCACTGTTCCTGCTGCTGTTAATTTAGTTTTTTCCTTAATTCCACCTTCTGTATGTATCATTTGTTTGGTAATGTTTAATCATTTGTTTGGGCATGTCGTCATCTAAATGCTTGGTTTGAGATTTGTCCTTGATGTATCATATAGTCATTATATACCAAAATTTCTTGGATGCTTGTATATTTACTGTGAACTCTTTTATATACGTTTCGAGCCTAGGAG</genome_strand>
        <mrna_strand>TGTTGGCATTGCTTGTCTCCCTTTGGGACTTATATTTTCGTTCATCAGGCGTCCAAAGGCTGTTATTACACGGTCACAGTATATCAAG...................................................................................................................GAAGCTACCGAGCTTGGTAAAAAAGCGAAAG-A-TGAAGAAAGCAACTGATGCACTTCATCAAGAAGAAAGGAGCGGGAGTAAGGGAAGAAAATGGCGGAAGAATGTAAAGGCAGTCGAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGTGCTTCTTCTTGAAGATGATGTCAAGGCGCTAGAGGAAATGTATCCTCAAGGTGAAAAG........................................................................................................GCTGAGACTGCTTGGGCAATGACAGTTCTAGGTTATTTGGCAAAACTCATCCTAGGTGTTTTAGG...........................................................................................................GCTGATTGTCTCTGTAGCTTGGGTTGCCCATATCGTGATATATCTTCTGATTGATCCTCCACTTTCTTCTTTCCTCAATGAGGTTTTCATCAAACTAGATGATATTTGGG............................................................................................GTCTCTTGGGCACTGCAGCTTTTGCATTTTTTTGCTTCTACCTTCTGCTTGCAGTGATTGCTGGAGCTATGATGATTGGCTTGAGATTAGTTTTTGTTACGATTCACCCAATGAA...........................................................................................................GTGGGGAGCTACGCTCATGAACTCCTTTCTTTTCAATGTGGGCCTTATTCTTCTTTGCTCCATCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCATTCAGTTCTGCGCCACGGCCTTTGCATACTATGCTCAAGCCACTGCAGCTCAAGAAATATTTGGTCACAATCTGCAATCTCTTCGTGGAATTAAGTATCTATACAA.........................................................................................GTACAACGTGTTTCAAATTGGATTCATTGTTTTAGCTGGTCTGACATTTGTTTACTATGCTGCCTTT.................................................................................GGGTGGAGAAGGAAAAAGCCTAGTGGGAGGTTCCAGCTCTCCAGTTAAAGGTTTTGATTGGATAGCAGTGCACGTATCTGACCGTATTTGAGACTTACTCTGGTCTATCACTAATGTTGAGGCTTTGAACTGTGGTGTATGTTGCCTAGTTTTGTTTCATATTATTGGAGGAGGCAACACCACTAAATTTGATTTCTACAGTGGAAGTTGGATGTTGGCGACTCTGTACTACTGCTGCTGCTGCTTGCCACTGTTCCTGCTGCTGTTAATTTAGTTTTTTCCTTAATTCCACCTTCTGTATGTATCATTTGTTTGGTAATGTTTAATCATTTGTTTGGGCATGTCGTCATCTAAATGCTTGGTTTGAGATTTGTCCTTGATGTATCATATAGTCATTATATACCAAAATTTCTTGGATGCTTGTATATTTACTGTGAACTCTTTTATATACGTTTCGAGCCTAGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026I24-W9iz2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U325476" ref_strand="+" ref_description="SGN-U325476        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: | Symbol: None | LMBR1 integral membrane family protein, contains Pfam PF04791: LMBR1-like conserved region | chr5:186693-190456 FORWARD | Aliases: T10O8.170, T10O8_170(evalue: 2e-83, score=305) genbank/nr: gi|15240980|ref|NP_195766.1| expressed protein [Arabidopsis thaliana] gi|11281130|pir||T48168 hypothetical protein T10O8.170 - Arabidopsis thaliana gi|7320724|emb|CAB81929.1| putative protein [Arabidopsis thaliana] gi|18176296|gb|AAL60018.1| unknown protein [Arabidopsis thaliana] gi|20465353|gb|AAM20080.1| unknown protein [Arabidopsis thaliana](evalue: 2e-81, score=305)">
      <seq>gcaaatccgctcgtcctgtttttccctttcttttcgaaaacccagatctgaaaaagggtctctgttcatcaaatttcaaacccaaaccctaaattcttctcattcacacgttattccgattcgaatcaaccttcaaaattgatccgaatcgagaaatcttcacacaacaatgggggatttcaatctcgccttggttattgtagccattgtagtatgtattctcgttttcgtagtcaatgtctatcttctcatcaattatcagcaccctgatgatgcaaatcaagcctatttccccaaatttgttgtcgtttttggcttatcagtcgctgccatttctattctcatgttaccggccgatgttgctaatcggcaggcatgtcaacacgcgatttataatggagcgtgtaatctcacgctcccaatgaagcaactatggcttgctatctacattgttgatgctattctcgttttcttcgtcattccttttgctatgttttattacgaaggcgaccaggataagactattgccaaaaggcttaaaagtgcaatgtgttgggtgttggtcacagcaatcgtgtgtgctttgttgcttggaattttatatgggctcgccggaaaggcagacttcactgtaagacacctgtcatcagccaccacttcatttccaaattcatttgattttaacaatggtcaacaatgtattggaaacggtgcccgtcagtgttctgcatactctgctagtgcttcctctgagacaacctgnactatgcgtgctacttttcctgaatatgtcgttgctctggctactattgttggatctgtacttttcacgatttttggtggtgttggcattgcttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-W9iz2/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="91231" stop="87803"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90931" g_stop="90412" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="519" r_length="519" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90411" i_stop="90329" i_length="83">
            <donor d_prob="0.553" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90328" g_stop="90243" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="605" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90242" i_stop="88867" i_length="1376">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88866" g_stop="88751" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="606" r_stop="721" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88750" i_stop="88631" i_length="120">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.606" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88630" g_stop="88520" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="722" r_stop="832" r_length="111" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="88519" i_stop="88130" i_length="390">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.838" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="88129" g_stop="88103" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="833" r_stop="859" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-U325476" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>860</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U325476" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90931" e_stop="90412"/>
          <exon e_start="90328" e_stop="90243"/>
          <exon e_start="88866" e_stop="88751"/>
          <exon e_start="88630" e_stop="88520"/>
          <exon e_start="88129" e_stop="88103"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAATCCGCCCGTCCTGTTTTTCCCCTTTCTTTTCGAAAACCCAGATCTGAAAAAGGGTCTCTGTTCATCAAATTTCAAACCCAAACCCTAAATTCTTCTCATTCACACGTTATTCCGATTCGAATCAACCTTCAAAATTGATCCGAATCGAGAAATCTTCACACAACAATGGGGGATTTCAATCTCGCCTTGGTTATTGTAGCCATTGTAGTATGTATTCTCGTTTTCGTAGTCAATGTCTATCTTCTCATCAATTATCAGCACCCTGATGATGCAAATCAAGCCTATTTCCCCAAATTTGTTGTCGTTTTTGGCTTATCAGTCGCTGCCATTTCTATTCTCATGTTACCGGCCGATGTTGCTAATCGGCAGGCATGTCAACACGCGATTTATAATGGAGCGTGTAATCTCACGCTCCCAATGAAGCAACTATGGCTTGCTATCTACATTGTTGATGCTATTCTCGTTTTCTTCGTCATTCCTTTTGCTATGTTTTATTACGAAGGCGACCAGGATAAGTACGTGAATTTGAACAATTTTGGATGTGATGTGTATGGTATGGTATTGCTGTTCTGATGTTTTTATTTTCTGTTTTCTGTAGGACTATTGCCAAAAGGCTTAAAAGTGCAATGTGTTGGGTGTTGGTCACAGCAATCGTGTGTGCTTTGTTGCTTGGAATTTTATATGGTAAGCTTCGAGTAACTTTGTGTGTTGATGAGACTTGTTGACATGTATAATATGCTGTGCATTTCTAGCTTTGGATGCTAATGTGATGTAGGGTGAGCTTCGGGACTAGTTAGTTTCGATCAGGAAATGTCAGAATCTGGGTACGGAGTTGGGTAATTTAGATGACAGCCAACTATGCCATAACCAAAATTAGTTGGGTTGATTCAATGAATTATCTGTATCCATTAAATGCAAGAGTTAAGAGTATCTTTTGGCTACTGTAAGCAGTTTACCTACATTCTCTACCTTTATTGTGGTCTGAACTGAGGATTGCATTGAGATGTTTTCATAGGCAGAGTTAAAAGCCTGAGTCTTGGATATGGAGTGAATTGGTATAAAGATCACATACTTAATGGTTCAAATTACGAGCTTATTGAGGGAGTTGTCGTGTCTCTCTTATTTGAGATTCTCTATCATGTGTGGTTGTTGTGTTTCTTATTTGGACTTCACTATCATGTGTAGTTGCTGTGTTTCTTATTTGGACTTCACTATTATGTGTCTAGCTTTGGAAGTTATTACAGTTTCTTCGGTTGGTAGTTTTTTCTCATGAATTCCCCCCCCCCCCCCCCCATAGATGATGGGACAATTACGAAAAGAAGAATATCTGGATATTGGCACCCAAAGGGTAGCGGCTGGGGGTTACCCTTGTCATAAGAAAAAAGAATATCTGGATGCTGTTTATGGGAAAATTATGCCTAGTGTTAGGAGTTGTATTTTGCCCTTCTAGATTTCTTATTATAAGTTGAATACTCTTGATTATACCCAAGATGGTGTCAAGAATGTCTCATCTGGTTTGTGGCTCAATTACAAGCTTCCCACAGATTTTCCCATCTTTGCCACTCTAGTTGTTGTAGTGCTACCTGGGTCTAGTTTTGACCAGATACGAATGTGTGATTATTGGGACATATTTCAAAACATTATGCATTTTTTACGTGTGGATACTGAAGAACCAAAAGAGAAGGGGAGGTGATCTTGTCCGCCGCATGTTATCAAGAATTTTACTGCAATGGCAAGTAGTTATGAACTTTTGGGACCCCAAAACTGTTGCTAACTGCACCTTGCTCTTCGATTAATTATGCAATGGGGAACATACTTATGTACATAGTTACATTCATCCCTTTCCTCAGGGTTTATGTAGTTTTCAATTGCAATTTGTTACCTTCATTGCTTTTAACTTTGTGGATCTCCTTTGCACATTTTACCACTTTTTTTCCCTGATAAGTATACTGAAGTGTCTAGTTATATTGAATTGCTTAAGTTCGGGTAAGTTGTTTTGGTTTTGTTGTTCATCACACTTCTTTTTTGATCTTTATCTACCCCTCTTTTGGGTATTTCAGGGCTCGCCGGAAAGGCAGACTTCACTGTAAGACACCTGTCATCAGCCACCACTTCATTTCCAAATTCATTTGATTTTAACAATGGTCAACAATGTATTGGAAACGGTGCCCGTCAGGTTGGTGCAAATTTAAACTTTCTTGTTTCTTAGTTAGTTGAGCTTATATAAGCATCAATAAGTAGTTTAATGTCTTATTCCAAAGTCGCCATTCTAATCCTTGCCTTCAATTGTTACCAGTGTTCTGCATACTCTGCTAGTGCTTCCTCTGAGACAACCTGGACTATGCGTGCTACTTTTCCTGAATATGTCGTTGCTCTGGCTACTATTGTTGGATCTGTACTTTTCACGGTATGACAATTCCTAATTCTAGACACTTGAATATTGTTATTGTTGTGATGAAGAGACTTAATGTTCAATTCTTCAGTCATTTCTGTCTTGGCAAAATGCCTCTTAATATGGAGAACTTCTTAGATATCACTTTTCTGGTTTTTGAGTGTAGAACTTTAGAAATCAATGTGAGTAATTTTTCTGTGGTTTGCAGTTGAAAATAAAATAAATTTGTGTAAGGGTGGCCACTTGACTATGAATGTTTTGTTGTGTCTTCTGATTATAGTTGAGGGGGTTAGGGTGATCGGTTCTTTTAAGGTTGGGGAGCAGCATTGGAGGCCAAAAGAGAGAACCCGTCACCCTAATATGCATGTTTGGTACTGACTTATCTGCTTCACATATTATCTCCAGATTTTTGGTGGTGTTGGCATTGCTTGT</genome_strand>
        <mrna_strand>GCAAATCCGCTCGTCCTGTTTTT-CCCTTTCTTTTCGAAAACCCAGATCTGAAAAAGGGTCTCTGTTCATCAAATTTCAAACCCAAACCCTAAATTCTTCTCATTCACACGTTATTCCGATTCGAATCAACCTTCAAAATTGATCCGAATCGAGAAATCTTCACACAACAATGGGGGATTTCAATCTCGCCTTGGTTATTGTAGCCATTGTAGTATGTATTCTCGTTTTCGTAGTCAATGTCTATCTTCTCATCAATTATCAGCACCCTGATGATGCAAATCAAGCCTATTTCCCCAAATTTGTTGTCGTTTTTGGCTTATCAGTCGCTGCCATTTCTATTCTCATGTTACCGGCCGATGTTGCTAATCGGCAGGCATGTCAACACGCGATTTATAATGGAGCGTGTAATCTCACGCTCCCAATGAAGCAACTATGGCTTGCTATCTACATTGTTGATGCTATTCTCGTTTTCTTCGTCATTCCTTTTGCTATGTTTTATTACGAAGGCGACCAGGATAA...................................................................................GACTATTGCCAAAAGGCTTAAAAGTGCAATGTGTTGGGTGTTGGTCACAGCAATCGTGTGTGCTTTGTTGCTTGGAATTTTATATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTCGCCGGAAAGGCAGACTTCACTGTAAGACACCTGTCATCAGCCACCACTTCATTTCCAAATTCATTTGATTTTAACAATGGTCAACAATGTATTGGAAACGGTGCCCGTCAG........................................................................................................................TGTTCTGCATACTCTGCTAGTGCTTCCTCTGAGACAACCTGNACTATGCGTGCTACTTTTCCTGAATATGTCGTTGCTCTGGCTACTATTGTTGGATCTGTACTTTTCACG......................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTGGTGGTGTTGGCATTGCTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026I24-W9iz2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U340733" ref_strand="+" ref_description="SGN-U340733        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>tgaagccacgttcagttcaatcacggactcttcgcatcactttaaaattttaaatttatttctttccacaattttctccaaaatcacaatttttacatcttcttcagaatggaggaatcagattggaatcagtcattttcgtcggagattagggatgagcaatttaccggtgatgtatcgatatcgcgacacgaggaggaggtaccagtgattgacgatgatgatcggcggcctccgttgccgtttcctgagaggaataatgtttttcacaatgcaccttattttccggcgactgacaatgaggaagttgtgcggttagacagagatgatacatgttcttacattgtagttattctcactttctggctcttcggtaatttgcagcttggaccaaattccctcatcctgataaaacctaattccttatttgtgaaaaatataaagggtggaagagatggatgatgctaaacatagaccaacggtgtatggggtctatgaaaatccatctnctgatgntcnntgcactttctctgaagcttacataacctctcttccctgcaacactataaagcatggatatattacttgaatcaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-W9iz2/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="+" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="96009" stop="99057"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96309" g_stop="96681" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="373" r_length="373" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96682" i_stop="98363" i_length="1682">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.682" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98364" g_stop="98434" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="445" r_length="72" r_score="0.930"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98435" i_stop="98521" i_length="87">
            <donor d_prob="0.893" d_score="0.90"/>
            <acceptor a_prob="0.974" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98522" g_stop="98647" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="571" r_length="126" r_score="0.849"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="98648" i_stop="98731" i_length="84">
            <donor d_prob="0.000" d_score="0.80"/>
            <acceptor a_prob="0.940" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98732" g_stop="98757" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="596" r_length="25" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="+" ref_id="SGN-U340733" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U340733" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96309" e_stop="96681"/>
          <exon e_start="98364" e_stop="98434"/>
          <exon e_start="98522" e_stop="98647"/>
          <exon e_start="98732" e_stop="98757"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGCCACGTTCAGTTCAATCACGGACTCTTCGCATCACTTTAAAATTTTAAATTTATTTCTTTCCACAATTTTCTCCAAAATCACAATTTTTACATCTTCTTCAGAATGGAGGAATCAGATTGGAATCAGTCATTTTCGTCGGAGATTAGGGATGAGCAATTTACCGGTGATGTATCGATATCGCGACACGAGGAGGAGGTACCAGTGATTGACGATGATGATCGGCGGCCTCCGTTGCCGTTTCCTGAGAGGAATAATGTTTTTCACAATGCACCTTATTTTCCGGCGACTGACAATGAGGAAGTTGTGCGGTTAGACAGAGATGATACATGTTCTTACATTGTAGTTATTCTCACTTTCTGGCTCTTCGGTAATTTTTTTTCTCCCAAAATCTGTGGATGTTGTTTGCCTTTCTTTTTCATTTTTATTTGATTATCGTTGCAGCTCTGAAAACTGAAAATAAGATAAAATGATGATATTTGGATATGTTCACTTGTGCTTTTTTTTTTCTTTCCATCATACAGTTGCGTCTCAACCATTCATTGTTCCGCTTTAGCTCCCTAAGTTATGACTACCTTTTTATTAAAATATATCTCAGTCATTAGTCAGCGAAATGTTTAATTCCAATGGACAATAGATGTGTGGAGGCCAACTTAGCATCGGAGTATGTTTTAATACAAATATACGAAACGATGTATAGTTGAGGTATGATACTTTTATTCCTATACTCAGGCATTGAAGTGTGTTTTTAATACTAATGGAATGATGGTTAGGTAGTTAAATGAAACAATGGACTGTTGAGGTATGAAACTCACAAAGAAAGTGATAGTATAAGTGTATTTAACAACAACTATTATGGCTCAATCTCAACTGAAACATGGTAGCTGTATGAAGTTTGCACTATCCGTTTCGCTTCATTATTTTATTCCGTGAAGTCTGACCTGTTTCATTCCGACATTTGATTATTTGGGGTTCTCTAAGACTAATTTACATAATTTTTCTACTATTATATAAATCTATATACAGTCTAAAAAAGTTCTTGCAAAAACAGCTTCTCCTGTAAGTGTAGCTATATGACTAAGCTTTAATACCTACCAGTCAGTGTTTTCTTTTTGCATTCTGTTTTTTGTTAAGTCTCATGGATTCGAGAATATTTTATTTGATTTTAGGTCTATCTCTTTCCTGTTAGAACTTTCAATTATTATGGTTTCACACCTATAAACTTGCACATTTAGAGATCTTAGTAGGACACAACCAAACCATCTCAGACGATCTTTCTCGTCATGGATACACAACTTGATGAGTACACATCAAGTATTTATTCTCGTATGAGATCATTTTTTGTTTTGTTTATTCTCGTATGACTACATATCCATCTTGCTATTTGCATTTATGTGATGCTCATCTTGCGCAAGTGTTGAGGCTTATATGTAACAAATTTACGGATGTCTTTTGAAAGAAGGGGAATCAAGATAACAACTACAATTGTCATACTAATTTGCTGGAGAGTGTAAATTTTATGCACATGTGAAGTTGACTGGGACTAGGTCAGTGTGTAGGTTGATGTGGAGTTTGGGGGGAAGAATGTTGGCTGCTAATGGTAGTGTGTTTCTCCAAATGATAATGCATATCGTAGCTTTTGATGACTTCACTCGTTGGGTTTACATTGTGGGATACTAAAATTTTATGAATCACTCGACTATCGTAATTGATCACTTAGCATGCTCATATTATTAGTATTTACTTAAAAGGTTTAATTCCTACGCAAATAGATCGTAAGAATCATTCGTATTTAAAATTTTTTTCTCTCTGACATTTTTCCTGGTGAACACAATATTTAACACTTCAGAGCTTCCTTTGTGGAAATAATTTCTCTTTACTCCAGTATCTATGACTTTTATAGAAAATATTCACGTTAATATGCTTGTGCATTTCTGTTTTCTTGCTTATTTTCTTTCACTAAAGACGTTTGATACTTGAGAGCTTGCCTTGATTAATGCTTTCTCTTTTCTTCAGTCTATATGACTTTGATACTCGGAGTTTATGGGCCAGGTAATTTGCAGCTTGGACCAAATTCCTCAATCCTGATAAAACCTAATTCCTTATTTGTGAAAAATATAAA-GGTAAAATGTGTAATGTCTTAGCTTGTTTTTTTTTTTGTATATTCTCTAAGCTCGTAGTTTGACAAAACAATGTGTCCCTTCTACAAGGTGGAAGAGATGGATGATGCTAACAATAGACCAACGGTGTATGGGTTCTATGAAAATCCATCTCTTGATGTTCTTGCAACTTCTTCTGAAGCTTACATAACCTCTCTTCCTGCAAACACTAATAAGGCACGACGTGACTTTAAATTTCTTTCGAGTCTCTAATGCCTATAGAGGATTGTTTAATGAATTATCTTGTGTTTGATTTTACAGCAATGGATATATTACTTGAATCAAGG</genome_strand>
        <mrna_strand>TGAAGCCACGTTCAGTTCAATCACGGACTCTTCGCATCACTTTAAAATTTTAAATTTATTTCTTTCCACAATTTTCTCCAAAATCACAATTTTTACATCTTCTTCAGAATGGAGGAATCAGATTGGAATCAGTCATTTTCGTCGGAGATTAGGGATGAGCAATTTACCGGTGATGTATCGATATCGCGACACGAGGAGGAGGTACCAGTGATTGACGATGATGATCGGCGGCCTCCGTTGCCGTTTCCTGAGAGGAATAATGTTTTTCACAATGCACCTTATTTTCCGGCGACTGACAATGAGGAAGTTGTGCGGTTAGACAGAGATGATACATGTTCTTACATTGTAGTTATTCTCACTTTCTGGCTCTTCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATTTGCAGCTTGGACCAAATTCCCTCATCCTGATAAAACCTAATTCCTTATTTGTGAAAAATATAAAGG.......................................................................................GTGGAAGAGATGGATGATGCTAAACATAGACCAACGGTGTATGGGGTCTATGAAAATCCATCTNCTGATGNTCNNTGCACTTTCTCTGAAGCTTACATAACCTCTCTTCCCTGCAACACTATAAAG....................................................................................C-ATGGATATATTACTTGAATCAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026I24-W9iz2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U327533" ref_strand="+" ref_description="SGN-U327533        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, contains low similarity to symplekin SP:Q92797 from (Homo sapiens) | chr5:162549-171071 REVERSE | Aliases: T10O8.110, T10O8_110(evalue: 1e-19, score=94) genbank/nr: gi|15240970|ref|NP_195760.1| expressed protein [Arabidopsis thaliana] gi|11357964|pir||T48162 hypothetical protein T10O8.110 - Arabidopsis thaliana gi|7320718|emb|CAB81923.1| putative protein [Arabidopsis thaliana](evalue: 8e-18, score=94)">
      <seq>aagagccgagtgggatccaggagagagtttcggctgggggttccacaacaaccagatctgatggagataatgttaatttgcaaccacttgttgcaatgtttggtactttagttgcccagggtgaaaaggctgcagcgtctttagatattttaatctctagtatatcagctgacttgctagcagatgttgtgatggctaatatgagaaatctaccttcaaatcagccaaaagctgttgatgatgaagagccacctctgaagccagagaatgtctctgattttagacgattattattactgttgatagacgctatttcccagtccactatgttagcagaacaagatgagagagctgatcaaaatttggtctcgatcgagccggagctgcaaaaaactaaagtggcagaagagcaccttgatcctgccactactaatggtacatttgatgccctaaattgtgcaagtgaagaagcaccagaatatgtaactgagcctctttcttctacaaagggtacccctcaactaatcgaaaatgatgtctcatccttgcaatgtgatgtcgctgacattgagaaaactgaggattccatacctggtctagattctgtagctctcaaagatgaagaatcagatcttgtagctgtttcagcatttggtacaactgaagttgaagatggtactcaagatcaagggtctagtgtagttaggtcatctttggaagtagttccatcaaattcaactgataggtcggaggagcttagtccaaaagcagctgtaacagatgtaaccagcatgaactcatcaacagctacttctattgggctttctccgcagttgcttctacccaagatatctgctccagttatcaacctctctgaagaagagaaggacaatttacagaagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-W9iz2/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="+" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="107905" stop="109574"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108205" g_stop="108587" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="383" r_length="383" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108588" i_stop="108753" i_length="166">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108754" g_stop="109274" g_length="521"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="904" r_length="521" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="+" ref_id="SGN-U327533" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>904</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U327533" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108205" e_stop="108587"/>
          <exon e_start="108754" e_stop="109274"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGCCGAGTGGGATCCAGGAGAGAGTTTCGGCTGGGGGTTCCACAACAACCAGATCTGATGGAGATAATGTTAATTTGCAACCACTTGTTGCAATGTTTGGTACTTTAGTTGCCCAGGGTGAAAAGGCTGCAGCGTCTTTAGATATTTTAATCTCTAGTATATCAGCTGACTTGCTAGCAGATGTTGTGATGGCTAATATGAGAAATCTACCTTCAAATCAGCCAAAAGCTGTTGATGATGAAGAGCCACCTCTGAAGCCAGAGAATGTCTCTGATTTTAGACGATTATTATTACTGTTGATAGACGCTATTTCCCAGTCCACTATGTTAGCAGAACAAGATGAGAGAGCTGATCAAAATTTGGTCTCGATCGAGCCGGAGGTCTATAATGCATTTTCTAATTCCTCAATATATTTTCCTTATCTTTTCCACTTTCAAGGGAGCACATAAGTAAAAGCCCTTGTCGGACTTCTAATTGGTTTATGTAGCTCTCTGCTTAAGCTCTTAATTTTGTTACTTATGGGCTTCTTTTTTAAACATTTTTCAGCTGCAAAAAACTAAAGTGGCAGAAGAGCACCTTGATCCTGCCACTACTAATGGTACATTTGATGCCCTAAATTGTGCAAGTGAAGAAGCACCAGAATATGTAACTGAGCCTCTTTCTTCTACAAAGGGTACCCCTCAACTAATCGAAAATGATGTCTCATCCTTGCAATGTGATGTCGCTGACATTGAGAAAACTGAGGATTCCATACCTGGTCTAGATTCTGTAGCTCTCAAAGATGAAGAATCAGATCTTGTAGCTGTTTCAGCATTTGGTACAACTGAAGTTGAAGATGGTACTCAAGATCAAGGGTCTAGTGTAGTTAGGTCATCTTTGGAAGTAGTTCCATCAAATTCAACTGATAGGTCGGAGGAGCTTAGTCCAAAAGCAGCTGTAACAGATGTAACCAGCATGAACTCATCAACAGCTACTTCTATTGGGCTTTCTCCGCAGTTGCTTCTACCCAAGATATCTGCTCCAGTTATCAACCTCTCTGAAGAAGAGAAGGACAATTTACAGAAGTC</genome_strand>
        <mrna_strand>AAGAGCCGAGTGGGATCCAGGAGAGAGTTTCGGCTGGGGGTTCCACAACAACCAGATCTGATGGAGATAATGTTAATTTGCAACCACTTGTTGCAATGTTTGGTACTTTAGTTGCCCAGGGTGAAAAGGCTGCAGCGTCTTTAGATATTTTAATCTCTAGTATATCAGCTGACTTGCTAGCAGATGTTGTGATGGCTAATATGAGAAATCTACCTTCAAATCAGCCAAAAGCTGTTGATGATGAAGAGCCACCTCTGAAGCCAGAGAATGTCTCTGATTTTAGACGATTATTATTACTGTTGATAGACGCTATTTCCCAGTCCACTATGTTAGCAGAACAAGATGAGAGAGCTGATCAAAATTTGGTCTCGATCGAGCCGGAG......................................................................................................................................................................CTGCAAAAAACTAAAGTGGCAGAAGAGCACCTTGATCCTGCCACTACTAATGGTACATTTGATGCCCTAAATTGTGCAAGTGAAGAAGCACCAGAATATGTAACTGAGCCTCTTTCTTCTACAAAGGGTACCCCTCAACTAATCGAAAATGATGTCTCATCCTTGCAATGTGATGTCGCTGACATTGAGAAAACTGAGGATTCCATACCTGGTCTAGATTCTGTAGCTCTCAAAGATGAAGAATCAGATCTTGTAGCTGTTTCAGCATTTGGTACAACTGAAGTTGAAGATGGTACTCAAGATCAAGGGTCTAGTGTAGTTAGGTCATCTTTGGAAGTAGTTCCATCAAATTCAACTGATAGGTCGGAGGAGCTTAGTCCAAAAGCAGCTGTAACAGATGTAACCAGCATGAACTCATCAACAGCTACTTCTATTGGGCTTTCTCCGCAGTTGCTTCTACCCAAGATATCTGCTCCAGTTATCAACCTCTCTGAAGAAGAGAAGGACAATTTACAGAAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>18</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="28277" PGL_stop="28789"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28277" e_stop="28789"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="28277" e_stop="28789" e_length="513"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28277" stop="28789"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U346912" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTACACATAACAATCTGTTCCCACACACATTTACAACTCTTACCTTTTGGTCCGCAGTTGATGTGGTTGCTCCTCTACTCGTACTGTTGTGAATCATGCAGAAATCGTTCGCTCAAAATCTCGTAAAACTATCATCACTACCACTAATTCTTGTTCTCATCTTCTGTTGTTTGGTTATGATGGTTTCAGCTAGAGGTAACTCTTTTGATACTAGTTTAGTTGCAAAGCTATATTTAAACTCCGTCTATTTCAGTTTGTTTGTTTGATTTTGACTTGGACGAGGTTTAGAGTAGTAAAAAGAATACTTTTAAATCTTCTGCATCTTTAACTAAAAGATAAGTAAAATGTATCAAATAGAGTTGTCGTTTAGTTTTAGATATCCTTTGGTAATTCATTTGTAAAGACATTATTCAGGCTCTCATGTGACTAATCCTGGTGTTGAGTCTGATGACGATGCTATGAAGCAAGACGAAACATCATTGAGGAAACGATTAGAGCCATTGCATCGCGA</gDNA_template>
            <first_frame> I  Y  T  *  Q  S  V  P  T  H  I  Y  N  S  Y  L  L  V  R  S  *  C  G  C  S  S  T  R  T  V  V  N  H  A  E  I  V  R  S  K  S  R  K  T  I  I  T  T  T  N  S  C  S  H  L  L  L  F  G  Y  D  G  F  S  *  R  *  L  F  *  Y  *  F  S  C  K  A  I  F  K  L  R  L  F  Q  F  V  C  L  I  L  T  W  T  R  F  R  V  V  K  R  I  L  L  N  L  L  H  L  *  L  K  D  K  *  N  V  S  N  R  V  V  V  *  F  *  I  S  F  G  N  S  F  V  K  T  L  F  R  L  S  C  D  *  S  W  C  *  V  *  *  R  C  Y  E  A  R  R  N  I  I  E  E  T  I  R  A  I  A  S  R </first_frame>
            <second_frame>  F  T  H  N  N  L  F  P  H  T  F  T  T  L  T  F  W  S  A  V  D  V  V  A  P  L  L  V  L  L  *  I  M  Q  K  S  F  A  Q  N  L  V  K  L  S  S  L  P  L  I  L  V  L  I  F  C  C  L  V  M  M  V  S  A  R  G  N  S  F  D  T  S  L  V  A  K  L  Y  L  N  S  V  Y  F  S  L  F  V  *  F  *  L  G  R  G  L  E  *  *  K  E  Y  F  *  I  F  C  I  F  N  *  K  I  S  K  M  Y  Q  I  E  L  S  F  S  F  R  Y  P  L  V  I  H  L  *  R  H  Y  S  G  S  H  V  T  N  P  G  V  E  S  D  D  D  A  M  K  Q  D  E  T  S  L  R  K  R  L  E  P  L  H  R   </second_frame>
            <third_frame>   L  H  I  T  I  C  S  H  T  H  L  Q  L  L  P  F  G  P  Q  L  M  W  L  L  L  Y  S  Y  C  C  E  S  C  R  N  R  S  L  K  I  S  *  N  Y  H  H  Y  H  *  F  L  F  S  S  S  V  V  W  L  *  W  F  Q  L  E  V  T  L  L  I  L  V  *  L  Q  S  Y  I  *  T  P  S  I  S  V  C  L  F  D  F  D  L  D  E  V  *  S  S  K  K  N  T  F  K  S  S  A  S  L  T  K  R  *  V  K  C  I  K  *  S  C  R  L  V  L  D  I  L  W  *  F  I  C  K  D  I  I  Q  A  L  M  *  L  I  L  V  L  S  L  M  T  M  L  *  S  K  T  K  H  H  *  G  N  D  *  S  H  C  I  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0026I24.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="36534" PGL_stop="35052"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="36534" e_stop="36323"/>
            <exon e_start="36172" e_stop="36059"/>
            <exon e_start="35676" e_stop="35616"/>
            <exon e_start="35540" e_stop="35420"/>
            <exon e_start="35304" e_stop="35206"/>
            <exon e_start="35125" e_stop="35052"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.936" e_score="1.000"/>
          <exon-intron don_prob="0.948" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.150" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.967" e_score="0.983"/>
          <exon-intron don_prob="0.985" acc_prob="0.000" e_score="0.980"/>
          <exon-only e_score="0.932"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="36534" e_stop="36323" e_length="212"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.936">
            <gDNA_intron_boundary i_start="36322" i_stop="36173" i_length="150"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="36172" e_stop="36059" e_length="114"/>
          </exon>
          <intron i_serial="2" don_prob="0.948" acc_prob="0.998">
            <gDNA_intron_boundary i_start="36058" i_stop="35677" i_length="382"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="35676" e_stop="35616" e_length="61"/>
          </exon>
          <intron i_serial="3" don_prob="0.961" acc_prob="0.150">
            <gDNA_intron_boundary i_start="35615" i_stop="35541" i_length="75"/>
          </intron>
          <exon e_serial="4" e_score="0.983">
            <gDNA_exon_boundary e_start="35540" e_stop="35420" e_length="121"/>
          </exon>
          <intron i_serial="4" don_prob="0.900" acc_prob="0.967">
            <gDNA_intron_boundary i_start="35419" i_stop="35305" i_length="115"/>
          </intron>
          <exon e_serial="5" e_score="0.980">
            <gDNA_exon_boundary e_start="35304" e_stop="35206" e_length="99"/>
          </exon>
          <intron i_serial="5" don_prob="0.985" acc_prob="0.000">
            <gDNA_intron_boundary i_start="35205" i_stop="35126" i_length="80"/>
          </intron>
          <exon e_serial="6" e_score="0.932">
            <gDNA_exon_boundary e_start="35125" e_stop="35052" e_length="74"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36534" stop="36323"/>
              <exon start="36172" stop="36059"/>
              <exon start="35676" stop="35616"/>
              <exon start="35540" stop="35420"/>
              <exon start="35304" stop="35206"/>
              <exon start="35125" stop="35052"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U343068" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAATTATTGATATTATAATTATTTGAGTGAAAGGTAAAATAACCGGGATACTTCAGGTGTGTTTTTGACCTTTCACTCTCTCAATTCTTTTGTTTGATCATTTTACGGATTTCTCCTTGTAACATTTCCGGATAACCTAATATTGATGACAGGAGGAAGTCTGGGAAGTAGCAGCTGAGCTGCTAGGTCTTTCTCTCGGCATACTAGCTTTG : GATACACCTGGTATCTCAAAGTCTTATCCTACATTGGCATTAACATGGTTAAGTGTGCGGATCCTACATCTTTGGTTTCGCTATCAGTCTCTTTCAGTTCTGCAATTCAACACG : ATAAATCTCAAACGGGCTCGCATATTAGTGAACTCTCATGTTTTACACTGTACAGTCCCAG : GAATCAATGAATGCAATAGGATGGAGAGCATCTTATTGTGGGAAAGATTCTTAAGGCCACGAATTATTTTTGAGATATCTTTGGAGGAGATGATCAATGCGGGCAAATACAGATCCAAGGT : CAAATCAAGAAACTCATTCATATGTACAAGGAGGAAAACTATTTTCTTGTAGTAAATGAACAGAAGGCAGCGGATTTTCAGGTCTTTGTATCTTTCAAG : GAAGGAGCCTCAAGCCTATCCGTTTTTCGAAGTATATGGCAAACCTATTGGCTATATCAAAACTGGGGCTGGTC</gDNA_template>
            <first_frame> *  L  L  I  L  *  L  F  E  *  K  V  K  *  P  G  Y  F  R  C  V  F  D  L  S  L  S  Q  F  F  C  L  I  I  L  R  I  S  P  C  N  I  S  G  *  P  N  I  D  D  R  R  K  S  G  K  *  Q  L  S  C  *  V  F  L  S  A  Y  *  L  W :   I  H  L  V  S  Q  S  L  I  L  H  W  H  *  H  G  *  V  C  G  S  Y  I  F  G  F  A  I  S  L  F  Q  F  C  N  S  T  R :   *  I  S  N  G  L  A  Y  *  *  T  L  M  F  Y  T  V  Q  S  Q  :  E  S  M  N  A  I  G  W  R  A  S  Y  C  G  K  D  S  *  G  H  E  L  F  L  R  Y  L  W  R  R  *  S  M  R  A  N  T  D  P  R   : S  N  Q  E  T  H  S  Y  V  Q  G  G  K  L  F  S  C  S  K  *  T  E  G  S  G  F  S  G  L  C  I  F  Q   : G  R  S  L  K  P  I  R  F  S  K  Y  M  A  N  L  L  A  I  S  K  L  G  L  V </first_frame>
            <second_frame>  N  Y  *  Y  Y  N  Y  L  S  E  R  *  N  N  R  D  T  S  G  V  F  L  T  F  H  S  L  N  S  F  V  *  S  F  Y  G  F  L  L  V  T  F  P  D  N  L  I  L  M  T  G  G  S  L  G  S  S  S  *  A  A  R  S  F  S  R  H  T  S  F   : G  Y  T  W  Y  L  K  V  L  S  Y  I  G  I  N  M  V  K  C  A  D  P  T  S  L  V  S  L  S  V  S  F  S  S  A  I  Q  H   : D  K  S  Q  T  G  S  H  I  S  E  L  S  C  F  T  L  Y  S  P  R :   N  Q  *  M  Q  *  D  G  E  H  L  I  V  G  K  I  L  K  A  T  N  Y  F  *  D  I  F  G  G  D  D  Q  C  G  Q  I  Q  I  Q  G  :  Q  I  K  K  L  I  H  M  Y  K  E  E  N  Y  F  L  V  V  N  E  Q  K  A  A  D  F  Q  V  F  V  S  F  K  :  E  G  A  S  S  L  S  V  F  R  S  I  W  Q  T  Y  W  L  Y  Q  N  W  G  W   </second_frame>
            <third_frame>   I  I  D  I  I  I  I  *  V  K  G  K  I  T  G  I  L  Q  V  C  F  *  P  F  T  L  S  I  L  L  F  D  H  F  T  D  F  S  L  *  H  F  R  I  T  *  Y  *  *  Q  E  E  V  W  E  V  A  A  E  L  L  G  L  S  L  G  I  L  A  L  :  D  T  P  G  I  S  K  S  Y  P  T  L  A  L  T  W  L  S  V  R  I  L  H  L  W  F  R  Y  Q  S  L  S  V  L  Q  F  N  T  :  I  N  L  K  R  A  R  I  L  V  N  S  H  V  L  H  C  T  V  P   : G  I  N  E  C  N  R  M  E  S  I  L  L  W  E  R  F  L  R  P  R  I  I  F  E  I  S  L  E  E  M  I  N  A  G  K  Y  R  S  K  V :   K  S  R  N  S  F  I  C  T  R  R  K  T  I  F  L  *  *  M  N  R  R  Q  R  I  F  R  S  L  Y  L  S  R :   K  E  P  Q  A  Y  P  F  F  E  V  Y  G  K  P  I  G  Y  I  K  T  G  A  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026I24.3" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36385" stop="36323"/>
                    <exon start="36172" stop="36059"/>
                    <exon start="35676" stop="35616"/>
                    <exon start="35540" stop="35420"/>
                    <exon start="35304" stop="35253"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>408</number_coding_nucleotides>
                  <number_encoded_amino_acids>136</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QEEVWEVAAELLGLSLGILALDTPGISKSYPTLALTWLSVRILHLWFRYQSLSVLQFNTINLKRARILVNSHVLHCTVPGINECNRMESILLWERFLRPRIIFEISLEEMINAGKYRSKVKSRNSFICTRRKTIFL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="48807" PGL_stop="42694"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48807" e_stop="48402"/>
            <exon e_start="46831" e_stop="46775"/>
            <exon e_start="46044" e_stop="45982"/>
            <exon e_start="45885" e_stop="45829"/>
            <exon e_start="45744" e_stop="45661"/>
            <exon e_start="45335" e_stop="45267"/>
            <exon e_start="45197" e_stop="45085"/>
            <exon e_start="44988" e_stop="44819"/>
            <exon e_start="43431" e_stop="43353"/>
            <exon e_start="43128" e_stop="42694"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.823" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.966" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.820" acc_prob="0.996" e_score="0.971"/>
          <exon-intron don_prob="0.000" acc_prob="0.890" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="0.994"/>
          <exon-intron don_prob="0.846" acc_prob="0.984" e_score="0.975"/>
          <exon-only e_score="0.922"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="48807" e_stop="48402" e_length="406"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.971">
            <gDNA_intron_boundary i_start="48401" i_stop="46832" i_length="1570"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="46831" e_stop="46775" e_length="57"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="46774" i_stop="46045" i_length="730"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="46044" e_stop="45982" e_length="63"/>
          </exon>
          <intron i_serial="3" don_prob="0.964" acc_prob="0.966">
            <gDNA_intron_boundary i_start="45981" i_stop="45886" i_length="96"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="45885" e_stop="45829" e_length="57"/>
          </exon>
          <intron i_serial="4" don_prob="0.823" acc_prob="0.995">
            <gDNA_intron_boundary i_start="45828" i_stop="45745" i_length="84"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="45744" e_stop="45661" e_length="84"/>
          </exon>
          <intron i_serial="5" don_prob="0.966" acc_prob="0.997">
            <gDNA_intron_boundary i_start="45660" i_stop="45336" i_length="325"/>
          </intron>
          <exon e_serial="6" e_score="0.971">
            <gDNA_exon_boundary e_start="45335" e_stop="45267" e_length="69"/>
          </exon>
          <intron i_serial="6" don_prob="0.820" acc_prob="0.996">
            <gDNA_intron_boundary i_start="45266" i_stop="45198" i_length="69"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="45197" e_stop="45085" e_length="113"/>
          </exon>
          <intron i_serial="7" don_prob="0.000" acc_prob="0.890">
            <gDNA_intron_boundary i_start="45084" i_stop="44989" i_length="96"/>
          </intron>
          <exon e_serial="8" e_score="0.994">
            <gDNA_exon_boundary e_start="44988" e_stop="44819" e_length="170"/>
          </exon>
          <intron i_serial="8" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="44818" i_stop="43432" i_length="1387"/>
          </intron>
          <exon e_serial="9" e_score="0.975">
            <gDNA_exon_boundary e_start="43431" e_stop="43353" e_length="79"/>
          </exon>
          <intron i_serial="9" don_prob="0.846" acc_prob="0.984">
            <gDNA_intron_boundary i_start="43352" i_stop="43129" i_length="224"/>
          </intron>
          <exon e_serial="10" e_score="0.922">
            <gDNA_exon_boundary e_start="43128" e_stop="42694" e_length="435"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48807" stop="48402"/>
              <exon start="46831" stop="46775"/>
              <exon start="46044" stop="45982"/>
              <exon start="45885" stop="45829"/>
              <exon start="45744" stop="45661"/>
              <exon start="45335" stop="45267"/>
              <exon start="45197" stop="45085"/>
              <exon start="44988" stop="44819"/>
              <exon start="43431" stop="43353"/>
              <exon start="43128" stop="42694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U319777" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAACCCCTTATCTTGTTGACAACAGAGGAAGAAAAAGCTTCATTCCTCTGTATCTACCATGAGGAAGAACCGACCCGTTTTGGTATCCATGGACATTCCGGCTCTTGAATTGTCCAACACCAGTATTCAATCTTACCCATCACAACAATGGAAGAACAAATTTGTCGGTTCTGCTAGTTTTTCTAAAGAAATTGGGTGTAATTTTGGTTGTATTTCGTTATCGGAGAATTTGGATGAAAAAGCCTTTAAAGGGTTTCATCCTACAACAACTCAGCTTTTAAAGCACCCTTTGGCTATGGTTGCTTTGATTCCCAGAGAAGCTGCATTGTTTGCTGCAGGTGCTATTGCTGGTGCCGCTGCAAAATCTGTTACTGCACCTCTTGACCGTATCAAGCTCCTCATGCAG : ACACATGGACTAAGAGCTGGGCAAGAAGCTGCAAAGAAAGGAATCGGATTCATTGAG : GCATTTGCATTGATTGGGAAGGAGGAAGGTATCAAAGGATATTGGAAAGGAAACCTTCCACAG : GTGATACGGATCATACCTTATAGTGCGGTGCAGTTATTTGCTTATGAAACGTACAAG : AAACTTTTTCAAGGAAAGGATGGGGAGCTTTCTGTCATTGGAAGACTAGCAGCAGGTGCTTGTGCTGGCATGACTTCTACTTTT : GTAACCTACCCACTCGATGTTCTCAGGTTGAGATTAGCAGTAGACCCTGGATATAAAACAATGAGTGAG : GTTGCTTTAAACATGCTGAAAGAGGAAGGCTTTGCATCCTTTTATAATGGTCTCGGGCCCTCGCTCATTGGAATAGCTCCATATATTGCTGTGAACTTTTGTGTTTTTGACTT : GGTGAAAAAAGCTTTGCCAGAAGAGTATCAGAAACGAACTGAAGCCACTCTGGCTACAGGTTTGATTTCAGCAACTATTGCCACTCTATTGTGCTATCCATTGGACACAGTGAGAAGGCAAATGCAAATGAAGGGTACACCTTATATGACAATTTTTGATGCCTTCCCAG : GTATAGTGGCCCGTGATGGTATAGTTGGACTCTACAGGGGTTTTGTTCCCAATGCACTGAAAACTCTCCCTAATAGCAG : CATTAGGCTTACTACTTTTGACACCGTGAAGCGTTTGCTAGCAAGAAGTGAGGAAGAGTTCCAGAAAATTATAGAGGAAAACCGCAGGCAAAAGGCAGAATAATTCCCAAGTAGATCTGATTCCATGGAGATAATTGATCTCGTCATTTTGAAGCATTGGTTCGACGAGCAAGAAACTTAGCTTCCAGTAATTACCTAGAGCTTCATTTTGTAAAACCAGGTTTAGTTGCCAGAATAGTTAGGTTGGCTTCCTTGTGACAACAAATATCTCTGTTATTTTTAGAGCTCATTTGAATGTATAATAATTACTTCATTCATTTCTGCATTTGAAGCAATTTGCAGTCTCCTTTAAATCCTTGTTTTATTTTCACATTGTAATCAATTAGTCAAAGTTCAAACATAAGAACAAAATTGATGTGAATAGTGGTGTTTAAA</gDNA_template>
            <first_frame> K  P  L  I  L  L  T  T  E  E  E  K  A  S  F  L  C  I  Y  H  E  E  E  P  T  R  F  G  I  H  G  H  S  G  S  *  I  V  Q  H  Q  Y  S  I  L  P  I  T  T  M  E  E  Q  I  C  R  F  C  *  F  F  *  R  N  W  V  *  F  W  L  Y  F  V  I  G  E  F  G  *  K  S  L  *  R  V  S  S  Y  N  N  S  A  F  K  A  P  F  G  Y  G  C  F  D  S  Q  R  S  C  I  V  C  C  R  C  Y  C  W  C  R  C  K  I  C  Y  C  T  S  *  P  Y  Q  A  P  H  A   : D  T  W  T  K  S  W  A  R  S  C  K  E  R  N  R  I  H  *   : G  I  C  I  D  W  E  G  G  R  Y  Q  R  I  L  E  R  K  P  S  T   : G  D  T  D  H  T  L  *  C  G  A  V  I  C  L  *  N  V  Q   : E  T  F  S  R  K  G  W  G  A  F  C  H  W  K  T  S  S  R  C  L  C  W  H  D  F  Y  F   : C  N  L  P  T  R  C  S  Q  V  E  I  S  S  R  P  W  I  *  N  N  E  *   : G  C  F  K  H  A  E  R  G  R  L  C  I  L  L  *  W  S  R  A  L  A  H  W  N  S  S  I  Y  C  C  E  L  L  C  F  *  L  :  G  E  K  S  F  A  R  R  V  S  E  T  N  *  S  H  S  G  Y  R  F  D  F  S  N  Y  C  H  S  I  V  L  S  I  G  H  S  E  K  A  N  A  N  E  G  Y  T  L  Y  D  N  F  *  C  L  P  R :   Y  S  G  P  *  W  Y  S  W  T  L  Q  G  F  C  S  Q  C  T  E  N  S  P  *  *  Q  :  H  *  A  Y  Y  F  *  H  R  E  A  F  A  S  K  K  *  G  R  V  P  E  N  Y  R  G  K  P  Q  A  K  G  R  I  I  P  K  *  I  *  F  H  G  D  N  *  S  R  H  F  E  A  L  V  R  R  A  R  N  L  A  S  S  N  Y  L  E  L  H  F  V  K  P  G  L  V  A  R  I  V  R  L  A  S  L  *  Q  Q  I  S  L  L  F  L  E  L  I  *  M  Y  N  N  Y  F  I  H  F  C  I  *  S  N  L  Q  S  P  L  N  P  C  F  I  F  T  L  *  S  I  S  Q  S  S  N  I  R  T  K  L  M  *  I  V  V  F  K </first_frame>
            <second_frame>  N  P  L  S  C  *  Q  Q  R  K  K  K  L  H  S  S  V  S  T  M  R  K  N  R  P  V  L  V  S  M  D  I  P  A  L  E  L  S  N  T  S  I  Q  S  Y  P  S  Q  Q  W  K  N  K  F  V  G  S  A  S  F  S  K  E  I  G  C  N  F  G  C  I  S  L  S  E  N  L  D  E  K  A  F  K  G  F  H  P  T  T  T  Q  L  L  K  H  P  L  A  M  V  A  L  I  P  R  E  A  A  L  F  A  A  G  A  I  A  G  A  A  A  K  S  V  T  A  P  L  D  R  I  K  L  L  M  Q  :  T  H  G  L  R  A  G  Q  E  A  A  K  K  G  I  G  F  I  E  :  A  F  A  L  I  G  K  E  E  G  I  K  G  Y  W  K  G  N  L  P  Q  :  V  I  R  I  I  P  Y  S  A  V  Q  L  F  A  Y  E  T  Y  K  :  K  L  F  Q  G  K  D  G  E  L  S  V  I  G  R  L  A  A  G  A  C  A  G  M  T  S  T  F  :  V  T  Y  P  L  D  V  L  R  L  R  L  A  V  D  P  G  Y  K  T  M  S  E  :  V  A  L  N  M  L  K  E  E  G  F  A  S  F  Y  N  G  L  G  P  S  L  I  G  I  A  P  Y  I  A  V  N  F  C  V  F  D  L :   V  K  K  A  L  P  E  E  Y  Q  K  R  T  E  A  T  L  A  T  G  L  I  S  A  T  I  A  T  L  L  C  Y  P  L  D  T  V  R  R  Q  M  Q  M  K  G  T  P  Y  M  T  I  F  D  A  F  P   : G  I  V  A  R  D  G  I  V  G  L  Y  R  G  F  V  P  N  A  L  K  T  L  P  N  S  S :   I  R  L  T  T  F  D  T  V  K  R  L  L  A  R  S  E  E  E  F  Q  K  I  I  E  E  N  R  R  Q  K  A  E  *  F  P  S  R  S  D  S  M  E  I  I  D  L  V  I  L  K  H  W  F  D  E  Q  E  T  *  L  P  V  I  T  *  S  F  I  L  *  N  Q  V  *  L  P  E  *  L  G  W  L  P  C  D  N  K  Y  L  C  Y  F  *  S  S  F  E  C  I  I  I  T  S  F  I  S  A  F  E  A  I  C  S  L  L  *  I  L  V  L  F  S  H  C  N  Q  L  V  K  V  Q  T  *  E  Q  N  *  C  E  *  W  C  L   </second_frame>
            <third_frame>   T  P  Y  L  V  D  N  R  G  R  K  S  F  I  P  L  Y  L  P  *  G  R  T  D  P  F  W  Y  P  W  T  F  R  L  L  N  C  P  T  P  V  F  N  L  T  H  H  N  N  G  R  T  N  L  S  V  L  L  V  F  L  K  K  L  G  V  I  L  V  V  F  R  Y  R  R  I  W  M  K  K  P  L  K  G  F  I  L  Q  Q  L  S  F  *  S  T  L  W  L  W  L  L  *  F  P  E  K  L  H  C  L  L  Q  V  L  L  L  V  P  L  Q  N  L  L  L  H  L  L  T  V  S  S  S  S  C  R :   H  M  D  *  E  L  G  K  K  L  Q  R  K  E  S  D  S  L  R :   H  L  H  *  L  G  R  R  K  V  S  K  D  I  G  K  E  T  F  H  R :   *  Y  G  S  Y  L  I  V  R  C  S  Y  L  L  M  K  R  T  R :   N  F  F  K  E  R  M  G  S  F  L  S  L  E  D  *  Q  Q  V  L  V  L  A  *  L  L  L  L :   *  P  T  H  S  M  F  S  G  *  D  *  Q  *  T  L  D  I  K  Q  *  V  R :   L  L  *  T  C  *  K  R  K  A  L  H  P  F  I  M  V  S  G  P  R  S  L  E  *  L  H  I  L  L  *  T  F  V  F  L  T   : W  *  K  K  L  C  Q  K  S  I  R  N  E  L  K  P  L  W  L  Q  V  *  F  Q  Q  L  L  P  L  Y  C  A  I  H  W  T  Q  *  E  G  K  C  K  *  R  V  H  L  I  *  Q  F  L  M  P  S  Q  :  V  *  W  P  V  M  V  *  L  D  S  T  G  V  L  F  P  M  H  *  K  L  S  L  I  A   : A  L  G  L  L  L  L  T  P  *  S  V  C  *  Q  E  V  R  K  S  S  R  K  L  *  R  K  T  A  G  K  R  Q  N  N  S  Q  V  D  L  I  P  W  R  *  L  I  S  S  F  *  S  I  G  S  T  S  K  K  L  S  F  Q  *  L  P  R  A  S  F  C  K  T  R  F  S  C  Q  N  S  *  V  G  F  L  V  T  T  N  I  S  V  I  F  R  A  H  L  N  V  *  *  L  L  H  S  F  L  H  L  K  Q  F  A  V  S  F  K  S  L  F  Y  F  H  I  V  I  N  *  S  K  F  K  H  K  N  K  I  D  V  N  S  G  V  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026I24.3" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48788" stop="48402"/>
                    <exon start="46831" stop="46775"/>
                    <exon start="46044" stop="45982"/>
                    <exon start="45885" stop="45829"/>
                    <exon start="45744" stop="45661"/>
                    <exon start="45335" stop="45267"/>
                    <exon start="45197" stop="45085"/>
                    <exon start="44988" stop="44819"/>
                    <exon start="43431" stop="43353"/>
                    <exon start="43128" stop="43026"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1179</number_coding_nucleotides>
                  <number_encoded_amino_acids>393</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QQRKKKLHSSVSTMRKNRPVLVSMDIPALELSNTSIQSYPSQQWKNKFVGSASFSKEIGCNFGCISLSENLDEKAFKGFHPTTTQLLKHPLAMVALIPREAALFAAGAIAGAAAKSVTAPLDRIKLLMQTHGLRAGQEAAKKGIGFIEAFALIGKEEGIKGYWKGNLPQVIRIIPYSAVQLFAYETYKKLFQGKDGELSVIGRLAAGACAGMTSTFVTYPLDVLRLRLAVDPGYKTMSEVALNMLKEEGFASFYNGLGPSLIGIAPYIAVNFCVFDLVKKALPEEYQKRTEATLATGLISATIATLLCYPLDTVRRQMQMKGTPYMTIFDAFPGIVARDGIVGLYRGFVPNALKTLPNSSIRLTTFDTVKRLLARSEEEFQKIIEENRRQKAE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="53261" PGL_stop="51291"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53261" e_stop="52889"/>
            <exon e_start="52409" e_stop="52342"/>
            <exon e_start="52221" e_stop="52193"/>
            <exon e_start="51793" e_stop="51597"/>
            <exon e_start="51505" e_stop="51291"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.938" e_score="0.981"/>
          <exon-intron don_prob="0.996" acc_prob="0.765" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.795" e_score="1.000"/>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="53261" e_stop="52889" e_length="373"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.938">
            <gDNA_intron_boundary i_start="52888" i_stop="52410" i_length="479"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="52409" e_stop="52342" e_length="68"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.765">
            <gDNA_intron_boundary i_start="52341" i_stop="52222" i_length="120"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="52221" e_stop="52193" e_length="29"/>
          </exon>
          <intron i_serial="3" don_prob="0.978" acc_prob="0.994">
            <gDNA_intron_boundary i_start="52192" i_stop="51794" i_length="399"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="51793" e_stop="51597" e_length="197"/>
          </exon>
          <intron i_serial="4" don_prob="0.979" acc_prob="0.795">
            <gDNA_intron_boundary i_start="51596" i_stop="51506" i_length="91"/>
          </intron>
          <exon e_serial="5" e_score="0.981">
            <gDNA_exon_boundary e_start="51505" e_stop="51291" e_length="215"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53261" stop="52889"/>
              <exon start="52409" stop="52342"/>
              <exon start="52221" stop="52193"/>
              <exon start="51793" stop="51597"/>
              <exon start="51505" stop="51291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317937" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53157" stop="52889"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336340" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATACTCATACAAGATGAGAGTTATCTCAATATAAAACCAAAATAAGTTATTTTCCAAAGAAAAAGACAAAACAAAAGAATGGCTTCATCATCACCAGCAGCAGAAACATGGCTCTTAGAAAATGGAAATATTAAGCCTTTAAGCAAAGAGATGAGACATGGGCATGGTCGTAGCCATGGACGAACGGCTCACAACGTATCGTCTTCGTCTCTTAGGAAAAAGTCTGATCTAACCCTTGTAAGGAAAGTACCTTGTGCCATTGTTAGAGATGTTCTTGCTAATATTCAAGAGGTCATTTTGGGAACTAAGCTTTTTGTGCTCTTCATTGCCATACCTATTGCCATTATTGCTCATTACAAAAACTTTGGAAGA : TCATGGGTTTTTGGATTGAGTTTACTTGGACTTACTCCATTGGCTGAACGTGTCAGCTTTTTGACAGA : GCAAATAGCTTTTTTTACTGGTCCAACAG : TTGGAGGGCTTCTAAATGCAACATGTGGAAATGCCACTGAACTTATAATAGCAATATTTGCTTTAATCGAACATAAAGTGGATGTTGTAAAATATTCACTCTTGGGATCTATTCTTTCGAATCTTCTTTTGGTTCTTGGCACTTCACTCTTTTGTGGTGGTATTGCAAATATATCAAAGGAACAAAAATATGATAGG : AAACAAGCAGATGTGAACTCTCTACTTTTATTATTGGGATTATTATGTCACGTGTTGCCTTTGATGTTTCGTTATGCTGGAGTTGGAGAATCAGCAGCAATAACAGCACAAGCAACATTGAATCTATCAAGAGTTAGCTGCATTGTTATGCTTCTTGCTAAGTTTGGTTATCTTGTGTTCCAATTGTGGACTCACCGACAACTTTTTCGACGCAC</gDNA_template>
            <first_frame> H  T  H  T  R  *  E  L  S  Q  Y  K  T  K  I  S  Y  F  P  K  K  K  T  K  Q  K  N  G  F  I  I  T  S  S  R  N  M  A  L  R  K  W  K  Y  *  A  F  K  Q  R  D  E  T  W  A  W  S  *  P  W  T  N  G  S  Q  R  I  V  F  V  S  *  E  K  V  *  S  N  P  C  K  E  S  T  L  C  H  C  *  R  C  S  C  *  Y  S  R  G  H  F  G  N  *  A  F  C  A  L  H  C  H  T  Y  C  H  Y  C  S  L  Q  K  L  W  K   : I  M  G  F  W  I  E  F  T  W  T  Y  S  I  G  *  T  C  Q  L  F  D  R  :  A  N  S  F  F  Y  W  S  N  S :   W  R  A  S  K  C  N  M  W  K  C  H  *  T  Y  N  S  N  I  C  F  N  R  T  *  S  G  C  C  K  I  F  T  L  G  I  Y  S  F  E  S  S  F  G  S  W  H  F  T  L  L  W  W  Y  C  K  Y  I  K  G  T  K  I  *  *   : E  T  S  R  C  E  L  S  T  F  I  I  G  I  I  M  S  R  V  A  F  D  V  S  L  C  W  S  W  R  I  S  S  N  N  S  T  S  N  I  E  S  I  K  S  *  L  H  C  Y  A  S  C  *  V  W  L  S  C  V  P  I  V  D  S  P  T  T  F  S  T  H </first_frame>
            <second_frame>  I  L  I  Q  D  E  S  Y  L  N  I  K  P  K  *  V  I  F  Q  R  K  R  Q  N  K  R  M  A  S  S  S  P  A  A  E  T  W  L  L  E  N  G  N  I  K  P  L  S  K  E  M  R  H  G  H  G  R  S  H  G  R  T  A  H  N  V  S  S  S  S  L  R  K  K  S  D  L  T  L  V  R  K  V  P  C  A  I  V  R  D  V  L  A  N  I  Q  E  V  I  L  G  T  K  L  F  V  L  F  I  A  I  P  I  A  I  I  A  H  Y  K  N  F  G  R  :  S  W  V  F  G  L  S  L  L  G  L  T  P  L  A  E  R  V  S  F  L  T  E :   Q  I  A  F  F  T  G  P  T   : V  G  G  L  L  N  A  T  C  G  N  A  T  E  L  I  I  A  I  F  A  L  I  E  H  K  V  D  V  V  K  Y  S  L  L  G  S  I  L  S  N  L  L  L  V  L  G  T  S  L  F  C  G  G  I  A  N  I  S  K  E  Q  K  Y  D  R  :  K  Q  A  D  V  N  S  L  L  L  L  L  G  L  L  C  H  V  L  P  L  M  F  R  Y  A  G  V  G  E  S  A  A  I  T  A  Q  A  T  L  N  L  S  R  V  S  C  I  V  M  L  L  A  K  F  G  Y  L  V  F  Q  L  W  T  H  R  Q  L  F  R  R   </second_frame>
            <third_frame>   Y  S  Y  K  M  R  V  I  S  I  *  N  Q  N  K  L  F  S  K  E  K  D  K  T  K  E  W  L  H  H  H  Q  Q  Q  K  H  G  S  *  K  M  E  I  L  S  L  *  A  K  R  *  D  M  G  M  V  V  A  M  D  E  R  L  T  T  Y  R  L  R  L  L  G  K  S  L  I  *  P  L  *  G  K  Y  L  V  P  L  L  E  M  F  L  L  I  F  K  R  S  F  W  E  L  S  F  L  C  S  S  L  P  Y  L  L  P  L  L  L  I  T  K  T  L  E  D :   H  G  F  L  D  *  V  Y  L  D  L  L  H  W  L  N  V  S  A  F  *  Q   : S  K  *  L  F  L  L  V  Q  Q  :  L  E  G  F  *  M  Q  H  V  E  M  P  L  N  L  *  *  Q  Y  L  L  *  S  N  I  K  W  M  L  *  N  I  H  S  W  D  L  F  F  R  I  F  F  W  F  L  A  L  H  S  F  V  V  V  L  Q  I  Y  Q  R  N  K  N  M  I  G :   N  K  Q  M  *  T  L  Y  F  Y  Y  W  D  Y  Y  V  T  C  C  L  *  C  F  V  M  L  E  L  E  N  Q  Q  Q  *  Q  H  K  Q  H  *  I  Y  Q  E  L  A  A  L  L  C  F  L  L  S  L  V  I  L  C  S  N  C  G  L  T  D  N  F  F  D  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026I24.3" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53215" stop="52889"/>
                    <exon start="52409" stop="52342"/>
                    <exon start="52221" stop="52193"/>
                    <exon start="51793" stop="51597"/>
                    <exon start="51505" stop="51293"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>834</number_coding_nucleotides>
                  <number_encoded_amino_acids>278</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VIFQRKRQNKRMASSSPAAETWLLENGNIKPLSKEMRHGHGRSHGRTAHNVSSSSLRKKSDLTLVRKVPCAIVRDVLANIQEVILGTKLFVLFIAIPIAIIAHYKNFGRSWVFGLSLLGLTPLAERVSFLTEQIAFFTGPTVGGLLNATCGNATELIIAIFALIEHKVDVVKYSLLGSILSNLLLVLGTSLFCGGIANISKEQKYDRKQADVNSLLLLLGLLCHVLPLMFRYAGVGESAAITAQATLNLSRVSCIVMLLAKFGYLVFQLWTHRQLFRR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="52731" e_stop="52342"/>
            <exon e_start="52221" e_stop="52193"/>
            <exon e_start="51793" e_stop="51640"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.765" e_score="0.997"/>
          <exon-intron don_prob="0.978" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="52731" e_stop="52342" e_length="390"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.765">
            <gDNA_intron_boundary i_start="52341" i_stop="52222" i_length="120"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="52221" e_stop="52193" e_length="29"/>
          </exon>
          <intron i_serial="2" don_prob="0.978" acc_prob="0.994">
            <gDNA_intron_boundary i_start="52192" i_stop="51794" i_length="399"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="51793" e_stop="51640" e_length="154"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52731" stop="52342"/>
              <exon start="52221" stop="52193"/>
              <exon start="51793" stop="51640"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336341" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACAAATAGTGGAGCAAAAAATATTATACAAAAAAAATTAAAGGGATTCAACTCAACGTTTACTTTCTATGCATATAAATTAATTTTAATCTTCTATTATATACTACGTGATGGAAATTTGAATGAATCCCGCCATGCATTAATTGAATACATAATATAATTTAAAAGTGTTATTTTATTTAACAACACAATTTGTTTTCTTTTTCTTTTTTTTGAATAACTAAAAGATCCGTTGAAAGATGTGAATCTGAGAATATTTTTTTGTGATTTCTTGATTAATTTATTTTATAATACTGACATTTTATTTTTCTATATTATATCAGTCATGGGTTTTTGGATTGAGTTTACTTGGACTTACTCCATTGGCTGAACGTGTCAGCTTTTTGACAGA : GCAAATAGCTTTTTTTACTGGTCCAACAG : TTGGAGGGCTTCTAAATGCAACATGTGGAAATGCCACTGAACTTATAATAGCAATATTTGCTTTAATCGAACATAAAGTGGATGTTGTAAAATATTCACTCTTGGGATCTATTCTTTCGAATCTTCTTTTGGTTCTTGGCACTTCACTCTTTTG</gDNA_template>
            <first_frame> T  N  S  G  A  K  N  I  I  Q  K  K  L  K  G  F  N  S  T  F  T  F  Y  A  Y  K  L  I  L  I  F  Y  Y  I  L  R  D  G  N  L  N  E  S  R  H  A  L  I  E  Y  I  I  *  F  K  S  V  I  L  F  N  N  T  I  C  F  L  F  L  F  F  E  *  L  K  D  P  L  K  D  V  N  L  R  I  F  F  C  D  F  L  I  N  L  F  Y  N  T  D  I  L  F  F  Y  I  I  S  V  M  G  F  W  I  E  F  T  W  T  Y  S  I  G  *  T  C  Q  L  F  D  R  :  A  N  S  F  F  Y  W  S  N  S :   W  R  A  S  K  C  N  M  W  K  C  H  *  T  Y  N  S  N  I  C  F  N  R  T  *  S  G  C  C  K  I  F  T  L  G  I  Y  S  F  E  S  S  F  G  S  W  H  F  T  L  L </first_frame>
            <second_frame>  Q  I  V  E  Q  K  I  L  Y  K  K  N  *  R  D  S  T  Q  R  L  L  S  M  H  I  N  *  F  *  S  S  I  I  Y  Y  V  M  E  I  *  M  N  P  A  M  H  *  L  N  T  *  Y  N  L  K  V  L  F  Y  L  T  T  Q  F  V  F  F  F  F  F  L  N  N  *  K  I  R  *  K  M  *  I  *  E  Y  F  F  V  I  S  *  L  I  Y  F  I  I  L  T  F  Y  F  S  I  L  Y  Q  S  W  V  F  G  L  S  L  L  G  L  T  P  L  A  E  R  V  S  F  L  T  E :   Q  I  A  F  F  T  G  P  T   : V  G  G  L  L  N  A  T  C  G  N  A  T  E  L  I  I  A  I  F  A  L  I  E  H  K  V  D  V  V  K  Y  S  L  L  G  S  I  L  S  N  L  L  L  V  L  G  T  S  L  F   </second_frame>
            <third_frame>   K  *  W  S  K  K  Y  Y  T  K  K  I  K  G  I  Q  L  N  V  Y  F  L  C  I  *  I  N  F  N  L  L  L  Y  T  T  *  W  K  F  E  *  I  P  P  C  I  N  *  I  H  N  I  I  *  K  C  Y  F  I  *  Q  H  N  L  F  S  F  S  F  F  *  I  T  K  R  S  V  E  R  C  E  S  E  N  I  F  L  *  F  L  D  *  F  I  L  *  Y  *  H  F  I  F  L  Y  Y  I  S  H  G  F  L  D  *  V  Y  L  D  L  L  H  W  L  N  V  S  A  F  *  Q   : S  K  *  L  F  L  L  V  Q  Q  :  L  E  G  F  *  M  Q  H  V  E  M  P  L  N  L  *  *  Q  Y  L  L  *  S  N  I  K  W  M  L  *  N  I  H  S  W  D  L  F  F  R  I  F  F  W  F  L  A  L  H  S  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026I24.3" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52457" stop="52342"/>
                    <exon start="52221" stop="52193"/>
                    <exon start="51793" stop="51642"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>297</number_coding_nucleotides>
                  <number_encoded_amino_acids>99</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIYFIILTFYFSILYQSWVFGLSLLGLTPLAERVSFLTEQIAFFTGPTVGGLLNATCGNATELIIAIFALIEHKVDVVKYSLLGSILSNLLLVLGTSLF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="62002" PGL_stop="58503"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62002" e_stop="61723"/>
            <exon e_start="61613" e_stop="61451"/>
            <exon e_start="61336" e_stop="60991"/>
            <exon e_start="60037" e_stop="59645"/>
            <exon e_start="58988" e_stop="58503"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.155" acc_prob="0.975" e_score="0.879"/>
          <exon-intron don_prob="0.994" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.989" e_score="1.000"/>
          <exon-only e_score="0.953"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.879">
            <gDNA_exon_boundary e_start="62002" e_stop="61723" e_length="280"/>
          </exon>
          <intron i_serial="1" don_prob="0.155" acc_prob="0.975">
            <gDNA_intron_boundary i_start="61722" i_stop="61614" i_length="109"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="61613" e_stop="61451" e_length="163"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.983">
            <gDNA_intron_boundary i_start="61450" i_stop="61337" i_length="114"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="61336" e_stop="60991" e_length="346"/>
          </exon>
          <intron i_serial="3" don_prob="0.988" acc_prob="0.983">
            <gDNA_intron_boundary i_start="60990" i_stop="60038" i_length="953"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="60037" e_stop="59645" e_length="393"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.989">
            <gDNA_intron_boundary i_start="59644" i_stop="58989" i_length="656"/>
          </intron>
          <exon e_serial="5" e_score="0.953">
            <gDNA_exon_boundary e_start="58988" e_stop="58503" e_length="486"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62002" stop="61723"/>
              <exon start="61613" stop="61451"/>
              <exon start="61336" stop="60991"/>
              <exon start="60037" stop="59645"/>
              <exon start="58988" stop="58969"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317079" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59714" stop="59645"/>
              <exon start="58988" stop="58503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U332619" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCAAAATTGTTCAGTGCATAGGTACTATTTTGCACCTACCCTCGAGCATAAGAAATTTTTTTTTATTTTCATTTTCTCAAGAACTGCAGATGCTAAATTTGGCCTGTTTGAACATCTTTTTAACAATCTTTCCTTAGGTTATACTTATTTCTCTTCAACGGATTAGTAGTTTTTTCTTCTATATGCTAGAAATGGATTAAGTTTGCTGAAACTGGTGCCGGATAAGATGGATACACATATTATTCATCACTCAACCCATTATTTATCCATAAAAATATA : TGATAAATAGCCTAATTTCGAGAGTCTTCACGGTGAAGTAGCTCGCCAGCCCCGTTGAAGGCAAACAACAACATTATATGGCTATTCCTCTATTTAGAAGTTTTCGAAGACTTCTGTTACTTTCACATCGCAGGCCTCTATCCTCTTCCTCTACCTCGTACAC : GCCAATTCTTGGAAACCGAGAAAGCTTTTTGCACTTGTCAAGGTTTGTGCCTCAAAATAGCTTAACCCGACAAGGCTCATGTTGGGACTTGAGGAACTTTAGTCATGGAAGTGTGAATTTTGTTATAACAAAAGATGGGAAACCCAAGTTTGAGACACATGAAGTGGAAGCACCAAAGAAAGAAAAATGGAAGACAAAGAAGAGGCTGAAGCTGCAAAGGAAGAGAGAGAAGAAGAAGAGAAATGCTGCAAATAAGAGGGATCCAAGAAGGCTTGGTCTAAAGGGGAAGAAGAAGAAGCAGAAGTTTGACACTGCTGAAGAAAGAATTAAGCAGAAGATAGAAAAT : GCAAAAGTCAAAGAAGCGCTGTTGATTGAGAGACTAAAGCGATATGAGGTTACCAAAGTTCAAGGTCCTGAGGTTAAGCCACACTTCCTCACTGGCGAAGAACGATTCTATATAAAAAAGATGGGGCAAAAAAGGTCTAATTATGTGCCAATTGGCAGAAGGGGAGTCTTTGGTGGTGTTATTCTTAATATGCATTTACATTGGAAAAAACATGAAACAGTCAAAGTCATATGCAAACCTGGTCAAGTCCAAGAATATGCCGATGAAATTGCAAGACTGAGTGGCGGCATCCCAATTCAGATAATTGCAGATGATACAATAGTTTTTTACAGAGGAAGGGATTATGTGCAACCCGAAATTATGTCTCCTATTGATACACTGTCAAAGAAGAAG : GCATTGGAAAAATCCAAATATGAGCAGTCGCTAGAGTCTGTGAGACGTTTCATTGCGATTGCTGAAAAGGAACTTGAACTCTACTACCGACATGTCGCTCTATATGGTGACCCAAGTAACCGAAGTGCTTACTCCATCCTTGATGATTCAAGAAGCACAAGAGGAAAACGAAATGCTGAGATAGGTGAGGAGAACTATTCAGCAAGCAAATCTAATATGTTGGATCTTGAATTGGAAATTGACGATAGTTGTTCTGATGACAACCAGTCTTTATAATTTGAATTTGAAAATACCTGAATAGGAGTTTTCAATTCCACCTTAGTTTGGAATTAACTACACCTATGTTTTTATCTGCGTAATATATGAAGTTGTTAATTAGCAAGTAGGGGTGTATATGACCGGGTTGATTCAGGTTTTTCAAATATCAAACCAAACCATTTATGTCGAATTTTTGAATTTATAAACCAAATCAAACTCATGTTTTTC</gDNA_template>
            <first_frame> T  K  I  V  Q  C  I  G  T  I  L  H  L  P  S  S  I  R  N  F  F  L  F  S  F  S  Q  E  L  Q  M  L  N  L  A  C  L  N  I  F  L  T  I  F  P  *  V  I  L  I  S  L  Q  R  I  S  S  F  F  F  Y  M  L  E  M  D  *  V  C  *  N  W  C  R  I  R  W  I  H  I  L  F  I  T  Q  P  I  I  Y  P  *  K  Y   : M  I  N  S  L  I  S  R  V  F  T  V  K  *  L  A  S  P  V  E  G  K  Q  Q  H  Y  M  A  I  P  L  F  R  S  F  R  R  L  L  L  L  S  H  R  R  P  L  S  S  S  S  T  S  Y  T :   P  I  L  G  N  R  E  S  F  L  H  L  S  R  F  V  P  Q  N  S  L  T  R  Q  G  S  C  W  D  L  R  N  F  S  H  G  S  V  N  F  V  I  T  K  D  G  K  P  K  F  E  T  H  E  V  E  A  P  K  K  E  K  W  K  T  K  K  R  L  K  L  Q  R  K  R  E  K  K  K  R  N  A  A  N  K  R  D  P  R  R  L  G  L  K  G  K  K  K  K  Q  K  F  D  T  A  E  E  R  I  K  Q  K  I  E  N  :  A  K  V  K  E  A  L  L  I  E  R  L  K  R  Y  E  V  T  K  V  Q  G  P  E  V  K  P  H  F  L  T  G  E  E  R  F  Y  I  K  K  M  G  Q  K  R  S  N  Y  V  P  I  G  R  R  G  V  F  G  G  V  I  L  N  M  H  L  H  W  K  K  H  E  T  V  K  V  I  C  K  P  G  Q  V  Q  E  Y  A  D  E  I  A  R  L  S  G  G  I  P  I  Q  I  I  A  D  D  T  I  V  F  Y  R  G  R  D  Y  V  Q  P  E  I  M  S  P  I  D  T  L  S  K  K  K  :  A  L  E  K  S  K  Y  E  Q  S  L  E  S  V  R  R  F  I  A  I  A  E  K  E  L  E  L  Y  Y  R  H  V  A  L  Y  G  D  P  S  N  R  S  A  Y  S  I  L  D  D  S  R  S  T  R  G  K  R  N  A  E  I  G  E  E  N  Y  S  A  S  K  S  N  M  L  D  L  E  L  E  I  D  D  S  C  S  D  D  N  Q  S  L  *  F  E  F  E  N  T  *  I  G  V  F  N  S  T  L  V  W  N  *  L  H  L  C  F  Y  L  R  N  I  *  S  C  *  L  A  S  R  G  V  Y  D  R  V  D  S  G  F  S  N  I  K  P  N  H  L  C  R  I  F  E  F  I  N  Q  I  K  L  M  F  F </first_frame>
            <second_frame>  P  K  L  F  S  A  *  V  L  F  C  T  Y  P  R  A  *  E  I  F  F  Y  F  H  F  L  K  N  C  R  C  *  I  W  P  V  *  T  S  F  *  Q  S  F  L  R  L  Y  L  F  L  F  N  G  L  V  V  F  S  S  I  C  *  K  W  I  K  F  A  E  T  G  A  G  *  D  G  Y  T  Y  Y  S  S  L  N  P  L  F  I  H  K  N  I  :  *  *  I  A  *  F  R  E  S  S  R  *  S  S  S  P  A  P  L  K  A  N  N  N  I  I  W  L  F  L  Y  L  E  V  F  E  D  F  C  Y  F  H  I  A  G  L  Y  P  L  P  L  P  R  T   : R  Q  F  L  E  T  E  K  A  F  C  T  C  Q  G  L  C  L  K  I  A  *  P  D  K  A  H  V  G  T  *  G  T  L  V  M  E  V  *  I  L  L  *  Q  K  M  G  N  P  S  L  R  H  M  K  W  K  H  Q  R  K  K  N  G  R  Q  R  R  G  *  S  C  K  G  R  E  R  R  R  R  E  M  L  Q  I  R  G  I  Q  E  G  L  V  *  R  G  R  R  R  S  R  S  L  T  L  L  K  K  E  L  S  R  R  *  K  M :   Q  K  S  K  K  R  C  *  L  R  D  *  S  D  M  R  L  P  K  F  K  V  L  R  L  S  H  T  S  S  L  A  K  N  D  S  I  *  K  R  W  G  K  K  G  L  I  M  C  Q  L  A  E  G  E  S  L  V  V  L  F  L  I  C  I  Y  I  G  K  N  M  K  Q  S  K  S  Y  A  N  L  V  K  S  K  N  M  P  M  K  L  Q  D  *  V  A  A  S  Q  F  R  *  L  Q  M  I  Q  *  F  F  T  E  E  G  I  M  C  N  P  K  L  C  L  L  L  I  H  C  Q  R  R  R :   H  W  K  N  P  N  M  S  S  R  *  S  L  *  D  V  S  L  R  L  L  K  R  N  L  N  S  T  T  D  M  S  L  Y  M  V  T  Q  V  T  E  V  L  T  P  S  L  M  I  Q  E  A  Q  E  E  N  E  M  L  R  *  V  R  R  T  I  Q  Q  A  N  L  I  C  W  I  L  N  W  K  L  T  I  V  V  L  M  T  T  S  L  Y  N  L  N  L  K  I  P  E  *  E  F  S  I  P  P  *  F  G  I  N  Y  T  Y  V  F  I  C  V  I  Y  E  V  V  N  *  Q  V  G  V  Y  M  T  G  L  I  Q  V  F  Q  I  S  N  Q  T  I  Y  V  E  F  L  N  L  *  T  K  S  N  S  C  F   </second_frame>
            <third_frame>   Q  N  C  S  V  H  R  Y  Y  F  A  P  T  L  E  H  K  K  F  F  F  I  F  I  F  S  R  T  A  D  A  K  F  G  L  F  E  H  L  F  N  N  L  S  L  G  Y  T  Y  F  S  S  T  D  *  *  F  F  L  L  Y  A  R  N  G  L  S  L  L  K  L  V  P  D  K  M  D  T  H  I  I  H  H  S  T  H  Y  L  S  I  K  I  Y :   D  K  *  P  N  F  E  S  L  H  G  E  V  A  R  Q  P  R  *  R  Q  T  T  T  L  Y  G  Y  S  S  I  *  K  F  S  K  T  S  V  T  F  T  S  Q  A  S  I  L  F  L  Y  L  V  H  :  A  N  S  W  K  P  R  K  L  F  A  L  V  K  V  C  A  S  K  *  L  N  P  T  R  L  M  L  G  L  E  E  L  *  S  W  K  C  E  F  C  Y  N  K  R  W  E  T  Q  V  *  D  T  *  S  G  S  T  K  E  R  K  M  E  D  K  E  E  A  E  A  A  K  E  E  R  E  E  E  E  K  C  C  K  *  E  G  S  K  K  A  W  S  K  G  E  E  E  E  A  E  V  *  H  C  *  R  K  N  *  A  E  D  R  K   : C  K  S  Q  R  S  A  V  D  *  E  T  K  A  I  *  G  Y  Q  S  S  R  S  *  G  *  A  T  L  P  H  W  R  R  T  I  L  Y  K  K  D  G  A  K  K  V  *  L  C  A  N  W  Q  K  G  S  L  W  W  C  Y  S  *  Y  A  F  T  L  E  K  T  *  N  S  Q  S  H  M  Q  T  W  S  S  P  R  I  C  R  *  N  C  K  T  E  W  R  H  P  N  S  D  N  C  R  *  Y  N  S  F  L  Q  R  K  G  L  C  A  T  R  N  Y  V  S  Y  *  Y  T  V  K  E  E   : G  I  G  K  I  Q  I  *  A  V  A  R  V  C  E  T  F  H  C  D  C  *  K  G  T  *  T  L  L  P  T  C  R  S  I  W  *  P  K  *  P  K  C  L  L  H  P  *  *  F  K  K  H  K  R  K  T  K  C  *  D  R  *  G  E  L  F  S  K  Q  I  *  Y  V  G  S  *  I  G  N  *  R  *  L  F  *  *  Q  P  V  F  I  I  *  I  *  K  Y  L  N  R  S  F  Q  F  H  L  S  L  E  L  T  T  P  M  F  L  S  A  *  Y  M  K  L  L  I  S  K  *  G  C  I  *  P  G  *  F  R  F  F  K  Y  Q  T  K  P  F  M  S  N  F  *  I  Y  K  P  N  Q  T  H  V  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026I24.3" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61572" stop="61451"/>
                    <exon start="61336" stop="60991"/>
                    <exon start="60037" stop="59645"/>
                    <exon start="58988" stop="58713"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1134</number_coding_nucleotides>
                  <number_encoded_amino_acids>378</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LASPVEGKQQHYMAIPLFRSFRRLLLLSHRRPLSSSSTSYTPILGNRESFLHLSRFVPQNSLTRQGSCWDLRNFSHGSVNFVITKDGKPKFETHEVEAPKKEKWKTKKRLKLQRKREKKKRNAANKRDPRRLGLKGKKKKQKFDTAEERIKQKIENAKVKEALLIERLKRYEVTKVQGPEVKPHFLTGEERFYIKKMGQKRSNYVPIGRRGVFGGVILNMHLHWKKHETVKVICKPGQVQEYADEIARLSGGIPIQIIADDTIVFYRGRDYVQPEIMSPIDTLSKKKALEKSKYEQSLESVRRFIAIAEKELELYYRHVALYGDPSNRSAYSILDDSRSTRGKRNAEIGEENYSASKSNMLDLELEIDDSCSDDNQSL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="62952" PGL_stop="62489"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62952" e_stop="62489"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="62952" e_stop="62489" e_length="464"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62952" stop="62489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U343499" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCCATCGATCACCACCATAACTCCGGTGAGTTTTCTCTTTCTCTCTCCATCAATCACCACCATAACTCCGGTGAGTTTTCTCTTTCTCTCTCTTCCTTCTTCTTCTTCATATATCGTCTCTTTCCCTGCATCTAGATGCCCTCCATCCATGTTCCCCTAGGTCCATGGTAATTCGAAAATAGGATGTGTGAATCGGTGAAAATGTTGAGCTCCTCTTTTGATTTGCTTCCTTATGTTAGGATTCTCAATGATTAACTGCTACCCAACTATGAATCCCGAAACTTGGAATGGTGCATGATCACTGAATATGTTGTGCACATGAAGTGCTCGACGAATTGTCACACTAAAATTCTCACAATGTGGATCCTATCTGTCAGGTTAATCAAGTTGCTGATTCATTTCCTTATTTATAAAGTAATCCAGTTTGGGTTTTTAAGTATACCCTGGGAACTATGAGTCATAAT</gDNA_template>
            <first_frame> S  I  D  H  H  H  N  S  G  E  F  S  L  S  L  S  I  N  H  H  H  N  S  G  E  F  S  L  S  L  S  S  F  F  F  F  I  Y  R  L  F  P  C  I  *  M  P  S  I  H  V  P  L  G  P  W  *  F  E  N  R  M  C  E  S  V  K  M  L  S  S  S  F  D  L  L  P  Y  V  R  I  L  N  D  *  L  L  P  N  Y  E  S  R  N  L  E  W  C  M  I  T  E  Y  V  V  H  M  K  C  S  T  N  C  H  T  K  I  L  T  M  W  I  L  S  V  R  L  I  K  L  L  I  H  F  L  I  Y  K  V  I  Q  F  G  F  L  S  I  P  W  E  L  *  V  I   </first_frame>
            <second_frame>  P  S  I  T  T  I  T  P  V  S  F  L  F  L  S  P  S  I  T  T  I  T  P  V  S  F  L  F  L  S  L  P  S  S  S  S  Y  I  V  S  F  P  A  S  R  C  P  P  S  M  F  P  *  V  H  G  N  S  K  I  G  C  V  N  R  *  K  C  *  A  P  L  L  I  C  F  L  M  L  G  F  S  M  I  N  C  Y  P  T  M  N  P  E  T  W  N  G  A  *  S  L  N  M  L  C  T  *  S  A  R  R  I  V  T  L  K  F  S  Q  C  G  S  Y  L  S  G  *  S  S  C  *  F  I  S  L  F  I  K  *  S  S  L  G  F  *  V  Y  P  G  N  Y  E  S  *  </second_frame>
            <third_frame>   H  R  S  P  P  *  L  R  *  V  F  S  F  S  L  H  Q  S  P  P  *  L  R  *  V  F  S  F  S  L  F  L  L  L  L  H  I  S  S  L  S  L  H  L  D  A  L  H  P  C  S  P  R  S  M  V  I  R  K  *  D  V  *  I  G  E  N  V  E  L  L  F  *  F  A  S  L  C  *  D  S  Q  *  L  T  A  T  Q  L  *  I  P  K  L  G  M  V  H  D  H  *  I  C  C  A  H  E  V  L  D  E  L  S  H  *  N  S  H  N  V  D  P  I  C  Q  V  N  Q  V  A  D  S  F  P  Y  L  *  S  N  P  V  W  V  F  K  Y  T  L  G  T  M  S  H  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026I24.3" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62697" stop="62497"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLPNYESRNLEWCMITEYVVHMKCSTNCHTKILTMWILSVRLIKLLIHFLIYKVIQFGFLSIPWEL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="75828" PGL_stop="74805"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75828" e_stop="75751"/>
            <exon e_start="75622" e_stop="75561"/>
            <exon e_start="75315" e_stop="74805"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.917" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="75828" e_stop="75751" e_length="78"/>
          </exon>
          <intron i_serial="1" don_prob="0.917" acc_prob="0.998">
            <gDNA_intron_boundary i_start="75750" i_stop="75623" i_length="128"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="75622" e_stop="75561" e_length="62"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.999">
            <gDNA_intron_boundary i_start="75560" i_stop="75316" i_length="245"/>
          </intron>
          <exon e_serial="3" e_score="0.996">
            <gDNA_exon_boundary e_start="75315" e_stop="74805" e_length="511"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75828" stop="75751"/>
              <exon start="75622" stop="75561"/>
              <exon start="75315" stop="74805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326079" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75621" stop="75561"/>
              <exon start="75315" stop="74964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U338303" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATGAATACATGAAGAAACCCGAGTTTATTGAGCTAATGAGGAGGCTTGGTGCATTAGGTGATGGGAACCAAGACCAAA : GTACTTTATCACCGGACGAATGGGAGGTAGCCTACCTTTATTTGGCATTTGTTCTAAGGAAG : CGAGGGCAACCGGATCAAACACGAAGAAACCCTAGACGAGACAAAGGCAAGATGCAACTGACAAAAGACGATATTGAGAATGTTAACGGTGCAGTGTAGTGCCGAAACGACTGTTATGGGACATGAGGAAGTATCTGAAATGAAGAGGAACAATAAACACAGTCCCCTCTTCAACTCGATAAATCCAGCTGCTAATCAATTTTGCAGAACAAAGACTAATTTTCGCCTTTATCATTTGTTACATCATCAACTCACTGTTGTACTACAACATAAAAAAGTTGATGTGGGCAAAGGTGGCTGGTTCTAATGATACTAGTCACCAGTGCTATGTTCGTTTGTCCACTTGCAACTTTCCATGTAACTCTCTGTATCATTACATATTTATAGTGAGAATGAGAAAATAGCCAAAAATATCAATCTGGGATATTAAGATAAAAATGTTTTAGAGATCTAAGACAATTGAACACTGAGTGACTGATGTCAAGATCAAATATATGTTGTTTGTTTACTT</gDNA_template>
            <first_frame> M  N  T  *  R  N  P  S  L  L  S  *  *  G  G  L  V  H  *  V  M  G  T  K  T  K  :  V  L  Y  H  R  T  N  G  R  *  P  T  F  I  W  H  L  F  *  G  S :   E  G  N  R  I  K  H  E  E  T  L  D  E  T  K  A  R  C  N  *  Q  K  T  I  L  R  M  L  T  V  Q  C  S  A  E  T  T  V  M  G  H  E  E  V  S  E  M  K  R  N  N  K  H  S  P  L  F  N  S  I  N  P  A  A  N  Q  F  C  R  T  K  T  N  F  R  L  Y  H  L  L  H  H  Q  L  T  V  V  L  Q  H  K  K  V  D  V  G  K  G  G  W  F  *  *  Y  *  S  P  V  L  C  S  F  V  H  L  Q  L  S  M  *  L  S  V  S  L  H  I  Y  S  E  N  E  K  I  A  K  N  I  N  L  G  Y  *  D  K  N  V  L  E  I  *  D  N  *  T  L  S  D  *  C  Q  D  Q  I  Y  V  V  C  L  L </first_frame>
            <second_frame>  *  I  H  E  E  T  R  V  Y  *  A  N  E  E  A  W  C  I  R  *  W  E  P  R  P  K :   Y  F  I  T  G  R  M  G  G  S  L  P  L  F  G  I  C  S  K  E   : A  R  A  T  G  S  N  T  K  K  P  *  T  R  Q  R  Q  D  A  T  D  K  R  R  Y  *  E  C  *  R  C  S  V  V  P  K  R  L  L  W  D  M  R  K  Y  L  K  *  R  G  T  I  N  T  V  P  S  S  T  R  *  I  Q  L  L  I  N  F  A  E  Q  R  L  I  F  A  F  I  I  C  Y  I  I  N  S  L  L  Y  Y  N  I  K  K  L  M  W  A  K  V  A  G  S  N  D  T  S  H  Q  C  Y  V  R  L  S  T  C  N  F  P  C  N  S  L  Y  H  Y  I  F  I  V  R  M  R  K  *  P  K  I  S  I  W  D  I  K  I  K  M  F  *  R  S  K  T  I  E  H  *  V  T  D  V  K  I  K  Y  M  L  F  V  Y   </second_frame>
            <third_frame>   E  Y  M  K  K  P  E  F  I  E  L  M  R  R  L  G  A  L  G  D  G  N  Q  D  Q   : S  T  L  S  P  D  E  W  E  V  A  Y  L  Y  L  A  F  V  L  R  K  :  R  G  Q  P  D  Q  T  R  R  N  P  R  R  D  K  G  K  M  Q  L  T  K  D  D  I  E  N  V  N  G  A  V  *  C  R  N  D  C  Y  G  T  *  G  S  I  *  N  E  E  E  Q  *  T  Q  S  P  L  Q  L  D  K  S  S  C  *  S  I  L  Q  N  K  D  *  F  S  P  L  S  F  V  T  S  S  T  H  C  C  T  T  T  *  K  S  *  C  G  Q  R  W  L  V  L  M  I  L  V  T  S  A  M  F  V  C  P  L  A  T  F  H  V  T  L  C  I  I  T  Y  L  *  *  E  *  E  N  S  Q  K  Y  Q  S  G  I  L  R  *  K  C  F  R  D  L  R  Q  L  N  T  E  *  L  M  S  R  S  N  I  C  C  L  F  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026I24.3" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75254" stop="75009"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QKTILRMLTVQCSAETTVMGHEEVSEMKRNNKHSPLFNSINPAANQFCRTKTNFRLYHLLHHQLTVVLQHKKVDVGKGGWF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026I24.3" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75826" stop="75751"/>
                    <exon start="75622" stop="75561"/>
                    <exon start="75315" stop="75217"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EYMKKPEFIELMRRLGALGDGNQDQSTLSPDEWEVAYLYLAFVLRKRGQPDQTRRNPRRDKGKMQLTKDDIENVNGAV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026I24.3" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75133" stop="74912"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IQLLINFAEQRLIFAFIICYIINSLLYYNIKKLMWAKVAGSNDTSHQCYVRLSTCNFPCNSLYHYIFIVRMRK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="76932" PGL_stop="77756"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="76932" e_stop="77756"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="76932" e_stop="77756" e_length="825"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76932" stop="77756"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U332317" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGATAACCCTATGTTGATTTTCAGGATTTAATAAGAGGATAACCTATGTTGATTTTCAGGATTTAATAAGAGGACAACCCTATGTTGATTTACAGGATTTAATAGGAGGAGGATAACATTCCAAGCATATAATACACAGATAATCTTTTGTAAGTCGTGTTAAGATGGGAATTCTCCACCTGTTGATATATGTACATAAACTATGTCTGATCAAAACTTAATAAATGAGTTTTGAGCCCCAAAGTAGTGTTTGGTTTCATTCACAGCACATGCAAAATCCATAAATAATAGAGTAAGAACAGTTGTTCAGTCTGCTAGAACTTGCAAATCATGGAGGCTAAAAGACAAATAAAAATCCTTCAATGTGCATGATTCTAAACAAGTAAAGCAAAAACTGAAAACCATACATGCCTACTAGCTATAAAACAAATAAATTATTCAAATGGAAGCGCTGAGATTTGTACTTTGAAACTAAAATCGACAAAGGAGCGCATACACACTTTAATCAATAACAATAATACTGAAGGACACAGCTAAGATATATAGGAAGGCATAAATCTGTACACACCTCCAGATGGAACTTGTATTTGATGCCAAAAGGATTTGAAGATTTGAATTTCTGCAACAATGGAAAATCTTAATATACAACTACTTATAGTAGTAACAACAGAAATCAGAAAATTGCTAGAAAATGATAACACAAGTTACCTTCTCTGAAAATTCTTCATCAAAACGTATCCAATAGACACTATTACCAAAGGCTAGCCCCTCAGCTGCACTTCCAAAGACAAACAGGAACCATATATCAACAAATCTTTAATCTGG</gDNA_template>
            <first_frame> G  *  P  Y  V  D  F  Q  D  L  I  R  G  *  P  M  L  I  F  R  I  *  *  E  D  N  P  M  L  I  Y  R  I  *  *  E  E  D  N  I  P  S  I  *  Y  T  D  N  L  L  *  V  V  L  R  W  E  F  S  T  C  *  Y  M  Y  I  N  Y  V  *  S  K  L  N  K  *  V  L  S  P  K  V  V  F  G  F  I  H  S  T  C  K  I  H  K  *  *  S  K  N  S  C  S  V  C  *  N  L  Q  I  M  E  A  K  R  Q  I  K  I  L  Q  C  A  *  F  *  T  S  K  A  K  T  E  N  H  T  C  L  L  A  I  K  Q  I  N  Y  S  N  G  S  A  E  I  C  T  L  K  L  K  S  T  K  E  R  I  H  T  L  I  N  N  N  N  T  E  G  H  S  *  D  I  *  E  G  I  N  L  Y  T  P  P  D  G  T  C  I  *  C  Q  K  D  L  K  I  *  I  S  A  T  M  E  N  L  N  I  Q  L  L  I  V  V  T  T  E  I  R  K  L  L  E  N  D  N  T  S  Y  L  L  *  K  F  F  I  K  T  Y  P  I  D  T  I  T  K  G  *  P  L  S  C  T  S  K  D  K  Q  E  P  Y  I  N  K  S  L  I  W </first_frame>
            <second_frame>  D  N  P  M  L  I  F  R  I  *  *  E  D  N  L  C  *  F  S  G  F  N  K  R  T  T  L  C  *  F  T  G  F  N  R  R  R  I  T  F  Q  A  Y  N  T  Q  I  I  F  C  K  S  C  *  D  G  N  S  P  P  V  D  I  C  T  *  T  M  S  D  Q  N  L  I  N  E  F  *  A  P  K  *  C  L  V  S  F  T  A  H  A  K  S  I  N  N  R  V  R  T  V  V  Q  S  A  R  T  C  K  S  W  R  L  K  D  K  *  K  S  F  N  V  H  D  S  K  Q  V  K  Q  K  L  K  T  I  H  A  Y  *  L  *  N  K  *  I  I  Q  M  E  A  L  R  F  V  L  *  N  *  N  R  Q  R  S  A  Y  T  L  *  S  I  T  I  I  L  K  D  T  A  K  I  Y  R  K  A  *  I  C  T  H  L  Q  M  E  L  V  F  D  A  K  R  I  *  R  F  E  F  L  Q  Q  W  K  I  L  I  Y  N  Y  L  *  *  *  Q  Q  K  S  E  N  C  *  K  M  I  T  Q  V  T  F  S  E  N  S  S  S  K  R  I  Q  *  T  L  L  P  K  A  S  P  S  A  A  L  P  K  T  N  R  N  H  I  S  T  N  L  *  S   </second_frame>
            <third_frame>   I  T  L  C  *  F  S  G  F  N  K  R  I  T  Y  V  D  F  Q  D  L  I  R  G  Q  P  Y  V  D  L  Q  D  L  I  G  G  G  *  H  S  K  H  I  I  H  R  *  S  F  V  S  R  V  K  M  G  I  L  H  L  L  I  Y  V  H  K  L  C  L  I  K  T  *  *  M  S  F  E  P  Q  S  S  V  W  F  H  S  Q  H  M  Q  N  P  *  I  I  E  *  E  Q  L  F  S  L  L  E  L  A  N  H  G  G  *  K  T  N  K  N  P  S  M  C  M  I  L  N  K  *  S  K  N  *  K  P  Y  M  P  T  S  Y  K  T  N  K  L  F  K  W  K  R  *  D  L  Y  F  E  T  K  I  D  K  G  A  H  T  H  F  N  Q  *  Q  *  Y  *  R  T  Q  L  R  Y  I  G  R  H  K  S  V  H  T  S  R  W  N  L  Y  L  M  P  K  G  F  E  D  L  N  F  C  N  N  G  K  S  *  Y  T  T  T  Y  S  S  N  N  R  N  Q  K  I  A  R  K  *  *  H  K  L  P  S  L  K  I  L  H  Q  N  V  S  N  R  H  Y  Y  Q  R  L  A  P  Q  L  H  F  Q  R  Q  T  G  T  I  Y  Q  Q  I  F  N  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0026I24.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="79411" PGL_stop="78584"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="79411" e_stop="78584"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="79411" e_stop="78584" e_length="828"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79411" stop="78584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U341332" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTATAGAGGTACATGCTTATATGAATTGAATCACTTTTATATAACTGCATCTCTTTCTATGAGCATTATGAGGTGTTTTGGATATGTTGATGCCCTCGTAAAATATCTCATCTCAAGCTTTCGTGTTTTTGGTTCCTGGCTATGTTAAATGTGTCTAGCCTATAGAGGTACATGCTTATATGAATTGAATCACTTTTATATAACTGCATCTCTTTCTATGAGCATTATGAGGTGTTTTGGATATGTTGATGCCCTCGTAAAATATCTCATCTCAAGCTTTCGTGTTTTTGGTTCCTGGCTATGTTAAATGTGTCATTTGTCCTATTTTAGTTTTTGTCCAGCTTTTACTTTCTATTTTGCCAATGAAAACTTGAAAATTCATTAGTGTGTTCAGAAGCTTCTCCAAACTAGCTCACTGAAAAAGGTGTATAATCCACATCTTTCTTAAATTTTGAAAAAAACTGTAAAAACTGAAGTAGAGGTTTATGAAAGATGTTTGTACAGTGTCCTCCTAATTGGATGCCTCTGCCTAGTATCTGGAGAAGCGACAGCCCTTTATCCAGAATTTATGTTTGTCCTGGGTGGCCTCTTACAGATTCTAAGCTATGAAAAATTGAAATTTGCAGTTTGCTATGCATTATTCGTGGTCTACTGAGGCACGTGCACGACGTGCACTGGCCAACATCTCAGTTTTACTCCGACCCGGAGGAATATTTATTGGAACAATGCCAGATGCCAATGTCATCGTCAAGAAGTATAGAGAAGGTTCAACTTTACTCAATTCTGCCCTGTTTGTCCCTGTTGAATCTATAAATGTTATGACTCTG</gDNA_template>
            <first_frame> P  I  E  V  H  A  Y  M  N  *  I  T  F  I  *  L  H  L  F  L  *  A  L  *  G  V  L  D  M  L  M  P  S  *  N  I  S  S  Q  A  F  V  F  L  V  P  G  Y  V  K  C  V  *  P  I  E  V  H  A  Y  M  N  *  I  T  F  I  *  L  H  L  F  L  *  A  L  *  G  V  L  D  M  L  M  P  S  *  N  I  S  S  Q  A  F  V  F  L  V  P  G  Y  V  K  C  V  I  C  P  I  L  V  F  V  Q  L  L  L  S  I  L  P  M  K  T  *  K  F  I  S  V  F  R  S  F  S  K  L  A  H  *  K  R  C  I  I  H  I  F  L  K  F  *  K  K  L  *  K  L  K  *  R  F  M  K  D  V  C  T  V  S  S  *  L  D  A  S  A  *  Y  L  E  K  R  Q  P  F  I  Q  N  L  C  L  S  W  V  A  S  Y  R  F  *  A  M  K  N  *  N  L  Q  F  A  M  H  Y  S  W  S  T  E  A  R  A  R  R  A  L  A  N  I  S  V  L  L  R  P  G  G  I  F  I  G  T  M  P  D  A  N  V  I  V  K  K  Y  R  E  G  S  T  L  L  N  S  A  L  F  V  P  V  E  S  I  N  V  M  T  L </first_frame>
            <second_frame>  L  *  R  Y  M  L  I  *  I  E  S  L  L  Y  N  C  I  S  F  Y  E  H  Y  E  V  F  W  I  C  *  C  P  R  K  I  S  H  L  K  L  S  C  F  W  F  L  A  M  L  N  V  S  S  L  *  R  Y  M  L  I  *  I  E  S  L  L  Y  N  C  I  S  F  Y  E  H  Y  E  V  F  W  I  C  *  C  P  R  K  I  S  H  L  K  L  S  C  F  W  F  L  A  M  L  N  V  S  F  V  L  F  *  F  L  S  S  F  Y  F  L  F  C  Q  *  K  L  E  N  S  L  V  C  S  E  A  S  P  N  *  L  T  E  K  G  V  *  S  T  S  F  L  N  F  E  K  N  C  K  N  *  S  R  G  L  *  K  M  F  V  Q  C  P  P  N  W  M  P  L  P  S  I  W  R  S  D  S  P  L  S  R  I  Y  V  C  P  G  W  P  L  T  D  S  K  L  *  K  I  E  I  C  S  L  L  C  I  I  R  G  L  L  R  H  V  H  D  V  H  W  P  T  S  Q  F  Y  S  D  P  E  E  Y  L  L  E  Q  C  Q  M  P  M  S  S  S  R  S  I  E  K  V  Q  L  Y  S  I  L  P  C  L  S  L  L  N  L  *  M  L  *  L   </second_frame>
            <third_frame>   Y  R  G  T  C  L  Y  E  L  N  H  F  Y  I  T  A  S  L  S  M  S  I  M  R  C  F  G  Y  V  D  A  L  V  K  Y  L  I  S  S  F  R  V  F  G  S  W  L  C  *  M  C  L  A  Y  R  G  T  C  L  Y  E  L  N  H  F  Y  I  T  A  S  L  S  M  S  I  M  R  C  F  G  Y  V  D  A  L  V  K  Y  L  I  S  S  F  R  V  F  G  S  W  L  C  *  M  C  H  L  S  Y  F  S  F  C  P  A  F  T  F  Y  F  A  N  E  N  L  K  I  H  *  C  V  Q  K  L  L  Q  T  S  S  L  K  K  V  Y  N  P  H  L  S  *  I  L  K  K  T  V  K  T  E  V  E  V  Y  E  R  C  L  Y  S  V  L  L  I  G  C  L  C  L  V  S  G  E  A  T  A  L  Y  P  E  F  M  F  V  L  G  G  L  L  Q  I  L  S  Y  E  K  L  K  F  A  V  C  Y  A  L  F  V  V  Y  *  G  T  C  T  T  C  T  G  Q  H  L  S  F  T  P  T  R  R  N  I  Y  W  N  N  A  R  C  Q  C  H  R  Q  E  V  *  R  R  F  N  F  T  Q  F  C  P  V  C  P  C  *  I  Y  K  C  Y  D  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026I24.3" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78793" stop="78584"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NLQFAMHYSWSTEARARRALANISVLLRPGGIFIGTMPDANVIVKKYREGSTLLNSALFVPVESINVMTL</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026I24.3" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78962" stop="78756"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILKKTVKTEVEVYERCLYSVLLIGCLCLVSGEATALYPEFMFVLGGLLQILSYEKLKFAVCYALFVVY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026I24.3" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78801" stop="78598"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KIEICSLLCIIRGLLRHVHDVHWPTSQFYSDPEEYLLEQCQMPMSSSRSIEKVQLYSILPCLSLLNL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="82531" PGL_stop="79666"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="82531" e_stop="82361"/>
            <exon e_start="81529" e_stop="81240"/>
            <exon e_start="81167" e_stop="81099"/>
            <exon e_start="80983" e_stop="80912"/>
            <exon e_start="80079" e_stop="79978"/>
            <exon e_start="79696" e_stop="79666"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.954" e_score="1.000"/>
          <exon-intron don_prob="0.802" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.841" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="82531" e_stop="82361" e_length="171"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.954">
            <gDNA_intron_boundary i_start="82360" i_stop="81530" i_length="831"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="81529" e_stop="81240" e_length="290"/>
          </exon>
          <intron i_serial="2" don_prob="0.802" acc_prob="0.000">
            <gDNA_intron_boundary i_start="81239" i_stop="81168" i_length="72"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="81167" e_stop="81099" e_length="69"/>
          </exon>
          <intron i_serial="3" don_prob="0.984" acc_prob="0.974">
            <gDNA_intron_boundary i_start="81098" i_stop="80984" i_length="115"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="80983" e_stop="80912" e_length="72"/>
          </exon>
          <intron i_serial="4" don_prob="0.841" acc_prob="0.989">
            <gDNA_intron_boundary i_start="80911" i_stop="80080" i_length="832"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="80079" e_stop="79978" e_length="102"/>
          </exon>
          <intron i_serial="5" don_prob="0.955" acc_prob="0.997">
            <gDNA_intron_boundary i_start="79977" i_stop="79697" i_length="281"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="79696" e_stop="79666" e_length="31"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82531" stop="82361"/>
              <exon start="81529" stop="81240"/>
              <exon start="81167" stop="81099"/>
              <exon start="80983" stop="80912"/>
              <exon start="80079" stop="79978"/>
              <exon start="79696" stop="79666"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U332557" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCCCTTCACTAATTCCTTCTTCTTCTCTCACTGTTTTATAGCTTAGTGTTGCAGATTTGTTCATAATCTATACTGATTGTGCTTCAAATTATGAAGAGAAGTTACTCAGGATCTCCATCTTCGAGTTCTTATGGACCTCCACAATCCAAATTTAAGCATAACCCAGAAG : GGTAGTTTTTTAACTGCTAGGGGCGATGTATTATCCCATAAATAATTGAACTTCTGATGCTAAACTTTAGGAAGTTGTAACCTTTTTGGATAAAGAAGCCAGAAGTTGGTTTTCTATTGCGGTTTGATTAAAAGTTTGAACTGGTGTCAGGCGACACTCATTTTCTGGAAGATGAGAGTACAAAAATCTTTGCCAGGAAAGTGGCTGATCATTACAGTGCGAGGACCAATCAAACTCTTGAAGAGCGCGAAGCAAGTCCTATCATCCATTTAAAGAAACTTAATAATTGG : ATCAAGAGTGTCTTGATTCAGCTTTATACGAAAAGAGGGGATGCAGTTCTTGATCTTGCTTGTGGGAAG : GGTGGCGATCTCATCAAATGGGATAAAGCAAAGATTGGATATTACGTTGGTATTGATATCGCCGATGGTTCA : ATAGAAGACTGCCGGACTCGTTACAATGGTGAGGCAGATCATCATCAGCGGCGCAAAAAGTTCTCATTTCCTGCCAGACTCCTGTGTGGAGATTGTTATGAG : GTTCGCTTGGATAGGGTTTTAGCAGATGATG</gDNA_template>
            <first_frame> F  P  F  T  N  S  F  F  F  S  H  C  F  I  A  *  C  C  R  F  V  H  N  L  Y  *  L  C  F  K  L  *  R  E  V  T  Q  D  L  H  L  R  V  L  M  D  L  H  N  P  N  L  S  I  T  Q  K  :  G  S  F  L  T  A  R  G  D  V  L  S  H  K  *  L  N  F  *  C  *  T  L  G  S  C  N  L  F  G  *  R  S  Q  K  L  V  F  Y  C  G  L  I  K  S  L  N  W  C  Q  A  T  L  I  F  W  K  M  R  V  Q  K  S  L  P  G  K  W  L  I  I  T  V  R  G  P  I  K  L  L  K  S  A  K  Q  V  L  S  S  I  *  R  N  L  I  I  G :   S  R  V  S  *  F  S  F  I  R  K  E  G  M  Q  F  L  I  L  L  V  G  R :   V  A  I  S  S  N  G  I  K  Q  R  L  D  I  T  L  V  L  I  S  P  M  V  Q :   *  K  T  A  G  L  V  T  M  V  R  Q  I  I  I  S  G  A  K  S  S  H  F  L  P  D  S  C  V  E  I  V  M  R :   F  A  W  I  G  F  *  Q  M  M </first_frame>
            <second_frame>  F  P  S  L  I  P  S  S  S  L  T  V  L  *  L  S  V  A  D  L  F  I  I  Y  T  D  C  A  S  N  Y  E  E  K  L  L  R  I  S  I  F  E  F  L  W  T  S  T  I  Q  I  *  A  *  P  R  R :   V  V  F  *  L  L  G  A  M  Y  Y  P  I  N  N  *  T  S  D  A  K  L  *  E  V  V  T  F  L  D  K  E  A  R  S  W  F  S  I  A  V  *  L  K  V  *  T  G  V  R  R  H  S  F  S  G  R  *  E  Y  K  N  L  C  Q  E  S  G  *  S  L  Q  C  E  D  Q  S  N  S  *  R  A  R  S  K  S  Y  H  P  F  K  E  T  *  *  L   : D  Q  E  C  L  D  S  A  L  Y  E  K  R  G  C  S  S  *  S  C  L  W  E   : G  W  R  S  H  Q  M  G  *  S  K  D  W  I  L  R  W  Y  *  Y  R  R  W  F   : N  R  R  L  P  D  S  L  Q  W  *  G  R  S  S  S  A  A  Q  K  V  L  I  S  C  Q  T  P  V  W  R  L  L  *   : G  S  L  G  *  G  F  S  R  *   </second_frame>
            <third_frame>   S  L  H  *  F  L  L  L  L  S  L  F  Y  S  L  V  L  Q  I  C  S  *  S  I  L  I  V  L  Q  I  M  K  R  S  Y  S  G  S  P  S  S  S  S  Y  G  P  P  Q  S  K  F  K  H  N  P  E   : G  *  F  F  N  C  *  G  R  C  I  I  P  *  I  I  E  L  L  M  L  N  F  R  K  L  *  P  F  W  I  K  K  P  E  V  G  F  L  L  R  F  D  *  K  F  E  L  V  S  G  D  T  H  F  L  E  D  E  S  T  K  I  F  A  R  K  V  A  D  H  Y  S  A  R  T  N  Q  T  L  E  E  R  E  A  S  P  I  I  H  L  K  K  L  N  N  W  :  I  K  S  V  L  I  Q  L  Y  T  K  R  G  D  A  V  L  D  L  A  C  G  K  :  G  G  D  L  I  K  W  D  K  A  K  I  G  Y  Y  V  G  I  D  I  A  D  G  S  :  I  E  D  C  R  T  R  Y  N  G  E  A  D  H  H  Q  R  R  K  K  F  S  F  P  A  R  L  L  C  G  D  C  Y  E  :  V  R  L  D  R  V  L  A  D  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026I24.3" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81398" stop="81240"/>
                    <exon start="81167" stop="81099"/>
                    <exon start="80983" stop="80912"/>
                    <exon start="80079" stop="79978"/>
                    <exon start="79696" stop="79667"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>432</number_coding_nucleotides>
                  <number_encoded_amino_acids>144</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KFELVSGDTHFLEDESTKIFARKVADHYSARTNQTLEEREASPIIHLKKLNNWIKSVLIQLYTKRGDAVLDLACGKGGDLIKWDKAKIGYYVGIDIADGSIEDCRTRYNGEADHHQRRKKFSFPARLLCGDCYEVRLDRVLADD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="90931" PGL_stop="84382"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="90931" e_stop="90412"/>
            <exon e_start="90328" e_stop="90243"/>
            <exon e_start="88866" e_stop="88751"/>
            <exon e_start="88630" e_stop="88520"/>
            <exon e_start="88129" e_stop="88031"/>
            <exon e_start="87915" e_stop="87793"/>
            <exon e_start="86687" e_stop="86625"/>
            <exon e_start="86520" e_stop="86456"/>
            <exon e_start="86348" e_stop="86239"/>
            <exon e_start="86146" e_stop="86032"/>
            <exon e_start="85924" e_stop="85859"/>
            <exon e_start="85196" e_stop="85086"/>
            <exon e_start="84996" e_stop="84930"/>
            <exon e_start="84848" e_stop="84382"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.553" acc_prob="0.996" e_score="0.996"/>
          <exon-intron don_prob="0.909" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.606" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.838" e_score="0.991"/>
          <exon-intron don_prob="0.993" acc_prob="1.000" e_score="0.989"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="0.967"/>
          <exon-intron don_prob="0.992" acc_prob="0.998" e_score="0.984"/>
          <exon-intron don_prob="0.801" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.936" acc_prob="0.959" e_score="0.991"/>
          <exon-intron don_prob="0.695" acc_prob="0.956" e_score="0.983"/>
          <exon-intron don_prob="0.993" acc_prob="0.851" e_score="1.000"/>
          <exon-intron don_prob="0.855" acc_prob="0.899" e_score="1.000"/>
          <exon-intron don_prob="0.843" acc_prob="0.919" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="90931" e_stop="90412" e_length="520"/>
          </exon>
          <intron i_serial="1" don_prob="0.553" acc_prob="0.996">
            <gDNA_intron_boundary i_start="90411" i_stop="90329" i_length="83"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="90328" e_stop="90243" e_length="86"/>
          </exon>
          <intron i_serial="2" don_prob="0.909" acc_prob="0.999">
            <gDNA_intron_boundary i_start="90242" i_stop="88867" i_length="1376"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="88866" e_stop="88751" e_length="116"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.606">
            <gDNA_intron_boundary i_start="88750" i_stop="88631" i_length="120"/>
          </intron>
          <exon e_serial="4" e_score="0.991">
            <gDNA_exon_boundary e_start="88630" e_stop="88520" e_length="111"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.838">
            <gDNA_intron_boundary i_start="88519" i_stop="88130" i_length="390"/>
          </intron>
          <exon e_serial="5" e_score="0.989">
            <gDNA_exon_boundary e_start="88129" e_stop="88031" e_length="99"/>
          </exon>
          <intron i_serial="5" don_prob="0.993" acc_prob="1.000">
            <gDNA_intron_boundary i_start="88030" i_stop="87916" i_length="115"/>
          </intron>
          <exon e_serial="6" e_score="0.967">
            <gDNA_exon_boundary e_start="87915" e_stop="87793" e_length="123"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="87792" i_stop="86688" i_length="1105"/>
          </intron>
          <exon e_serial="7" e_score="0.984">
            <gDNA_exon_boundary e_start="86687" e_stop="86625" e_length="63"/>
          </exon>
          <intron i_serial="7" don_prob="0.992" acc_prob="0.998">
            <gDNA_intron_boundary i_start="86624" i_stop="86521" i_length="104"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="86520" e_stop="86456" e_length="65"/>
          </exon>
          <intron i_serial="8" don_prob="0.801" acc_prob="0.981">
            <gDNA_intron_boundary i_start="86455" i_stop="86349" i_length="107"/>
          </intron>
          <exon e_serial="9" e_score="0.991">
            <gDNA_exon_boundary e_start="86348" e_stop="86239" e_length="110"/>
          </exon>
          <intron i_serial="9" don_prob="0.936" acc_prob="0.959">
            <gDNA_intron_boundary i_start="86238" i_stop="86147" i_length="92"/>
          </intron>
          <exon e_serial="10" e_score="0.983">
            <gDNA_exon_boundary e_start="86146" e_stop="86032" e_length="115"/>
          </exon>
          <intron i_serial="10" don_prob="0.695" acc_prob="0.956">
            <gDNA_intron_boundary i_start="86031" i_stop="85925" i_length="107"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="85924" e_stop="85859" e_length="66"/>
          </exon>
          <intron i_serial="11" don_prob="0.993" acc_prob="0.851">
            <gDNA_intron_boundary i_start="85858" i_stop="85197" i_length="662"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="85196" e_stop="85086" e_length="111"/>
          </exon>
          <intron i_serial="12" don_prob="0.855" acc_prob="0.899">
            <gDNA_intron_boundary i_start="85085" i_stop="84997" i_length="89"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="84996" e_stop="84930" e_length="67"/>
          </exon>
          <intron i_serial="13" don_prob="0.843" acc_prob="0.919">
            <gDNA_intron_boundary i_start="84929" i_stop="84849" i_length="81"/>
          </intron>
          <exon e_serial="14" e_score="0.998">
            <gDNA_exon_boundary e_start="84848" e_stop="84382" e_length="467"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90931" stop="90412"/>
              <exon start="90328" stop="90243"/>
              <exon start="88866" stop="88751"/>
              <exon start="88630" stop="88520"/>
              <exon start="88129" stop="88103"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U325476" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88118" stop="88031"/>
              <exon start="87915" stop="87793"/>
              <exon start="86687" stop="86625"/>
              <exon start="86520" stop="86456"/>
              <exon start="86348" stop="86239"/>
              <exon start="86146" stop="86032"/>
              <exon start="85924" stop="85859"/>
              <exon start="85196" stop="85086"/>
              <exon start="84996" stop="84930"/>
              <exon start="84848" stop="84382"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U323767" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAAATCCGCCCGTCCTGTTTTTCCCCTTTCTTTTCGAAAACCCAGATCTGAAAAAGGGTCTCTGTTCATCAAATTTCAAACCCAAACCCTAAATTCTTCTCATTCACACGTTATTCCGATTCGAATCAACCTTCAAAATTGATCCGAATCGAGAAATCTTCACACAACAATGGGGGATTTCAATCTCGCCTTGGTTATTGTAGCCATTGTAGTATGTATTCTCGTTTTCGTAGTCAATGTCTATCTTCTCATCAATTATCAGCACCCTGATGATGCAAATCAAGCCTATTTCCCCAAATTTGTTGTCGTTTTTGGCTTATCAGTCGCTGCCATTTCTATTCTCATGTTACCGGCCGATGTTGCTAATCGGCAGGCATGTCAACACGCGATTTATAATGGAGCGTGTAATCTCACGCTCCCAATGAAGCAACTATGGCTTGCTATCTACATTGTTGATGCTATTCTCGTTTTCTTCGTCATTCCTTTTGCTATGTTTTATTACGAAGGCGACCAGGATAA : GACTATTGCCAAAAGGCTTAAAAGTGCAATGTGTTGGGTGTTGGTCACAGCAATCGTGTGTGCTTTGTTGCTTGGAATTTTATATG : GGCTCGCCGGAAAGGCAGACTTCACTGTAAGACACCTGTCATCAGCCACCACTTCATTTCCAAATTCATTTGATTTTAACAATGGTCAACAATGTATTGGAAACGGTGCCCGTCAG : TGTTCTGCATACTCTGCTAGTGCTTCCTCTGAGACAACCTGGACTATGCGTGCTACTTTTCCTGAATATGTCGTTGCTCTGGCTACTATTGTTGGATCTGTACTTTTCACG : ATTTTTGGTGGTGTTGGCATTGCTTGTCTCCCGTTGGGACTTATATTTTCGTTCATCAGGCGTCCAAAGGCTGTTATTACACGGTCACAGTATATCAAG : GAAGCTACCGAGCTTGGTAAAAGAGCGAAAGAATTGAAGAAAGCAACTGATGCACTTCATCAAGAAGAAAGGAGCGGGAGTAAGGGAAGAAAATGGCGGAAGAATGTGAAGGCAGTCGAAAAG : GAGGTGCTTCTTCTTGAAGACGATGTCAAGGCGCTAGAGGAAATGTATCCTCAAGGTGAAAAG : GCTGAGACTGCTTGGGCAATGACAGTTCTAGGTTATTTGGCAAAACTCATCCTAGGTGTTTTAGG : GCTGATTGTCTCTGTAGCTTGGGTTGCCCATATCGTGATATATCTTCTGATTGATCCTCCACTTTCTTCTTTCCTTAATGAGGTTTTCATCAAACTAGATGATATTTGGG : GTCTCTTGGGCACTGCAGCTTTTGCATTTTTTTGCTTCTACCTTCTGCTTGCTGTGATTGCCGGAGCTATGATGATTGGCTTGAGATTAGTTTTTGTTACGATTCACCCAATGAA : GTGGGGAGCTACGCTCATGAACTCCTTTCTTTTCAATGTGGGCCTTATTCTTCTTTGCTCCATCAG : TGTCATTCAGTTCTGCGCCACGGCCTTTGCATACTATGCTCAAGCCACTGCAGCTCAAGAAATATTTGGTCACAATCTGCAATCTCTTCGTGGAATTAAGTATCTATACAA : GTACAACGTGTTTCAAATTGGATTCATTGTTTTAGCTGGTCTGACATTTGTTTACTATGCTGCCTTT : GGGTGGAGAAGGAAAAAGCCTAGTGGGAGGTTCCAGCTCTCCAGTTAAAGGTTTTGATTGGATAGCAGTGCACGTATCTGACCGTATTTGAGACTTACTCTGGTCTATCACTAATGTTGAGGCTTTGAACTGTGGTGTATGTTGCCTAGTTTTGTTTCATATTATTGGAGGAGGCAACACCACTAAATTTGATTTCTACAGTGGAAGTTGGATGTTGGCGACTCTGTACTACTGCTGCTGCTGCTTGCCACTGTTCCTGCTGCTGTTAATTTAGTTTTTTCCTTAATTCCACCTTCTGTATGTATCATTTGTTTGGTAATGTTTAATCATTTGTTTGGGCATGTCGTCATCTAAATGCTTGGTTTGAGATTTGTCCTTGATGTATCATATAGTCATTATATACCAAAATTTCTTGGATGCTTGTATATTTACTGTGAACTCTTTTATATACGTTTCGAGCCTAGGAG</gDNA_template>
            <first_frame> A  N  P  P  V  L  F  F  P  F  L  F  E  N  P  D  L  K  K  G  L  C  S  S  N  F  K  P  K  P  *  I  L  L  I  H  T  L  F  R  F  E  S  T  F  K  I  D  P  N  R  E  I  F  T  Q  Q  W  G  I  S  I  S  P  W  L  L  *  P  L  *  Y  V  F  S  F  S  *  S  M  S  I  F  S  S  I  I  S  T  L  M  M  Q  I  K  P  I  S  P  N  L  L  S  F  L  A  Y  Q  S  L  P  F  L  F  S  C  Y  R  P  M  L  L  I  G  R  H  V  N  T  R  F  I  M  E  R  V  I  S  R  S  Q  *  S  N  Y  G  L  L  S  T  L  L  M  L  F  S  F  S  S  S  F  L  L  L  C  F  I  T  K  A  T  R  I   : R  L  L  P  K  G  L  K  V  Q  C  V  G  C  W  S  Q  Q  S  C  V  L  C  C  L  E  F  Y  M  :  G  S  P  E  R  Q  T  S  L  *  D  T  C  H  Q  P  P  L  H  F  Q  I  H  L  I  L  T  M  V  N  N  V  L  E  T  V  P  V  S :   V  L  H  T  L  L  V  L  P  L  R  Q  P  G  L  C  V  L  L  F  L  N  M  S  L  L  W  L  L  L  L  D  L  Y  F  S  R :   F  L  V  V  L  A  L  L  V  S  R  W  D  L  Y  F  R  S  S  G  V  Q  R  L  L  L  H  G  H  S  I  S  R :   K  L  P  S  L  V  K  E  R  K  N  *  R  K  Q  L  M  H  F  I  K  K  K  G  A  G  V  R  E  E  N  G  G  R  M  *  R  Q  S  K  R :   R  C  F  F  L  K  T  M  S  R  R  *  R  K  C  I  L  K  V  K  R :   L  R  L  L  G  Q  *  Q  F  *  V  I  W  Q  N  S  S  *  V  F  *   : G  *  L  S  L  *  L  G  L  P  I  S  *  Y  I  F  *  L  I  L  H  F  L  L  S  L  M  R  F  S  S  N  *  M  I  F  G  :  V  S  W  A  L  Q  L  L  H  F  F  A  S  T  F  C  L  L  *  L  P  E  L  *  *  L  A  *  D  *  F  L  L  R  F  T  Q  *   : S  G  E  L  R  S  *  T  P  F  F  S  M  W  A  L  F  F  F  A  P  S   : V  S  F  S  S  A  P  R  P  L  H  T  M  L  K  P  L  Q  L  K  K  Y  L  V  T  I  C  N  L  F  V  E  L  S  I  Y  T   : S  T  T  C  F  K  L  D  S  L  F  *  L  V  *  H  L  F  T  M  L  P  L :   G  G  E  G  K  S  L  V  G  G  S  S  S  P  V  K  G  F  D  W  I  A  V  H  V  S  D  R  I  *  D  L  L  W  S  I  T  N  V  E  A  L  N  C  G  V  C  C  L  V  L  F  H  I  I  G  G  G  N  T  T  K  F  D  F  Y  S  G  S  W  M  L  A  T  L  Y  Y  C  C  C  C  L  P  L  F  L  L  L  L  I  *  F  F  P  *  F  H  L  L  Y  V  S  F  V  W  *  C  L  I  I  C  L  G  M  S  S  S  K  C  L  V  *  D  L  S  L  M  Y  H  I  V  I  I  Y  Q  N  F  L  D  A  C  I  F  T  V  N  S  F  I  Y  V  S  S  L  G  </first_frame>
            <second_frame>  Q  I  R  P  S  C  F  S  P  F  F  S  K  T  Q  I  *  K  R  V  S  V  H  Q  I  S  N  P  N  P  K  F  F  S  F  T  R  Y  S  D  S  N  Q  P  S  K  L  I  R  I  E  K  S  S  H  N  N  G  G  F  Q  S  R  L  G  Y  C  S  H  C  S  M  Y  S  R  F  R  S  Q  C  L  S  S  H  Q  L  S  A  P  *  *  C  K  S  S  L  F  P  Q  I  C  C  R  F  W  L  I  S  R  C  H  F  Y  S  H  V  T  G  R  C  C  *  S  A  G  M  S  T  R  D  L  *  W  S  V  *  S  H  A  P  N  E  A  T  M  A  C  Y  L  H  C  *  C  Y  S  R  F  L  R  H  S  F  C  Y  V  L  L  R  R  R  P  G  *  :  D  Y  C  Q  K  A  *  K  C  N  V  L  G  V  G  H  S  N  R  V  C  F  V  A  W  N  F  I  W :   A  R  R  K  G  R  L  H  C  K  T  P  V  I  S  H  H  F  I  S  K  F  I  *  F  *  Q  W  S  T  M  Y  W  K  R  C  P  S   : V  F  C  I  L  C  *  C  F  L  *  D  N  L  D  Y  A  C  Y  F  S  *  I  C  R  C  S  G  Y  Y  C  W  I  C  T  F  H   : D  F  W  W  C  W  H  C  L  S  P  V  G  T  Y  I  F  V  H  Q  A  S  K  G  C  Y  Y  T  V  T  V  Y  Q   : G  S  Y  R  A  W  *  K  S  E  R  I  E  E  S  N  *  C  T  S  S  R  R  K  E  R  E  *  G  K  K  M  A  E  E  C  E  G  S  R  K   : G  G  A  S  S  *  R  R  C  Q  G  A  R  G  N  V  S  S  R  *  K   : G  *  D  C  L  G  N  D  S  S  R  L  F  G  K  T  H  P  R  C  F  R  :  A  D  C  L  C  S  L  G  C  P  Y  R  D  I  S  S  D  *  S  S  T  F  F  F  P  *  *  G  F  H  Q  T  R  *  Y  L  G :   S  L  G  H  C  S  F  C  I  F  L  L  L  P  S  A  C  C  D  C  R  S  Y  D  D  W  L  E  I  S  F  C  Y  D  S  P  N  E  :  V  G  S  Y  A  H  E  L  L  S  F  Q  C  G  P  Y  S  S  L  L  H  Q  :  C  H  S  V  L  R  H  G  L  C  I  L  C  S  S  H  C  S  S  R  N  I  W  S  Q  S  A  I  S  S  W  N  *  V  S  I  Q  :  V  Q  R  V  S  N  W  I  H  C  F  S  W  S  D  I  C  L  L  C  C  L   : W  V  E  K  E  K  A  *  W  E  V  P  A  L  Q  L  K  V  L  I  G  *  Q  C  T  Y  L  T  V  F  E  T  Y  S  G  L  S  L  M  L  R  L  *  T  V  V  Y  V  A  *  F  C  F  I  L  L  E  E  A  T  P  L  N  L  I  S  T  V  E  V  G  C  W  R  L  C  T  T  A  A  A  A  C  H  C  S  C  C  C  *  F  S  F  F  L  N  S  T  F  C  M  Y  H  L  F  G  N  V  *  S  F  V  W  A  C  R  H  L  N  A  W  F  E  I  C  P  *  C  I  I  *  S  L  Y  T  K  I  S  W  M  L  V  Y  L  L  *  T  L  L  Y  T  F  R  A  *  E </second_frame>
            <third_frame>   K  S  A  R  P  V  F  P  L  S  F  R  K  P  R  S  E  K  G  S  L  F  I  K  F  Q  T  Q  T  L  N  S  S  H  S  H  V  I  P  I  R  I  N  L  Q  N  *  S  E  S  R  N  L  H  T  T  M  G  D  F  N  L  A  L  V  I  V  A  I  V  V  C  I  L  V  F  V  V  N  V  Y  L  L  I  N  Y  Q  H  P  D  D  A  N  Q  A  Y  F  P  K  F  V  V  V  F  G  L  S  V  A  A  I  S  I  L  M  L  P  A  D  V  A  N  R  Q  A  C  Q  H  A  I  Y  N  G  A  C  N  L  T  L  P  M  K  Q  L  W  L  A  I  Y  I  V  D  A  I  L  V  F  F  V  I  P  F  A  M  F  Y  Y  E  G  D  Q  D  K :   T  I  A  K  R  L  K  S  A  M  C  W  V  L  V  T  A  I  V  C  A  L  L  L  G  I  L  Y   : G  L  A  G  K  A  D  F  T  V  R  H  L  S  S  A  T  T  S  F  P  N  S  F  D  F  N  N  G  Q  Q  C  I  G  N  G  A  R  Q  :  C  S  A  Y  S  A  S  A  S  S  E  T  T  W  T  M  R  A  T  F  P  E  Y  V  V  A  L  A  T  I  V  G  S  V  L  F  T  :  I  F  G  G  V  G  I  A  C  L  P  L  G  L  I  F  S  F  I  R  R  P  K  A  V  I  T  R  S  Q  Y  I  K  :  E  A  T  E  L  G  K  R  A  K  E  L  K  K  A  T  D  A  L  H  Q  E  E  R  S  G  S  K  G  R  K  W  R  K  N  V  K  A  V  E  K  :  E  V  L  L  L  E  D  D  V  K  A  L  E  E  M  Y  P  Q  G  E  K  :  A  E  T  A  W  A  M  T  V  L  G  Y  L  A  K  L  I  L  G  V  L  G :   L  I  V  S  V  A  W  V  A  H  I  V  I  Y  L  L  I  D  P  P  L  S  S  F  L  N  E  V  F  I  K  L  D  D  I  W   : G  L  L  G  T  A  A  F  A  F  F  C  F  Y  L  L  L  A  V  I  A  G  A  M  M  I  G  L  R  L  V  F  V  T  I  H  P  M  K :   W  G  A  T  L  M  N  S  F  L  F  N  V  G  L  I  L  L  C  S  I  S :   V  I  Q  F  C  A  T  A  F  A  Y  Y  A  Q  A  T  A  A  Q  E  I  F  G  H  N  L  Q  S  L  R  G  I  K  Y  L  Y  K :   Y  N  V  F  Q  I  G  F  I  V  L  A  G  L  T  F  V  Y  Y  A  A  F  :  G  W  R  R  K  K  P  S  G  R  F  Q  L  S  S  *  R  F  *  L  D  S  S  A  R  I  *  P  Y  L  R  L  T  L  V  Y  H  *  C  *  G  F  E  L  W  C  M  L  P  S  F  V  S  Y  Y  W  R  R  Q  H  H  *  I  *  F  L  Q  W  K  L  D  V  G  D  S  V  L  L  L  L  L  L  A  T  V  P  A  A  V  N  L  V  F  S  L  I  P  P  S  V  C  I  I  C  L  V  M  F  N  H  L  F  G  H  V  V  I  *  M  L  G  L  R  F  V  L  D  V  S  Y  S  H  Y  I  P  K  F  L  G  C  L  Y  I  Y  C  E  L  F  Y  I  R  F  E  P  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026I24.3" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90788" stop="90412"/>
                    <exon start="90328" stop="90243"/>
                    <exon start="88866" stop="88751"/>
                    <exon start="88630" stop="88520"/>
                    <exon start="88129" stop="88031"/>
                    <exon start="87915" stop="87793"/>
                    <exon start="86687" stop="86625"/>
                    <exon start="86520" stop="86456"/>
                    <exon start="86348" stop="86239"/>
                    <exon start="86146" stop="86032"/>
                    <exon start="85924" stop="85859"/>
                    <exon start="85196" stop="85086"/>
                    <exon start="84996" stop="84930"/>
                    <exon start="84848" stop="84801"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1554</number_coding_nucleotides>
                  <number_encoded_amino_acids>518</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SESRNLHTTMGDFNLALVIVAIVVCILVFVVNVYLLINYQHPDDANQAYFPKFVVVFGLSVAAISILMLPADVANRQACQHAIYNGACNLTLPMKQLWLAIYIVDAILVFFVIPFAMFYYEGDQDKTIAKRLKSAMCWVLVTAIVCALLLGILYGLAGKADFTVRHLSSATTSFPNSFDFNNGQQCIGNGARQCSAYSASASSETTWTMRATFPEYVVALATIVGSVLFTIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATELGKRAKELKKATDALHQEERSGSKGRKWRKNVKAVEKEVLLLEDDVKALEEMYPQGEKAETAWAMTVLGYLAKLILGVLGLIVSVAWVAHIVIYLLIDPPLSSFLNEVFIKLDDIWGLLGTAAFAFFCFYLLLAVIAGAMMIGLRLVFVTIHPMKWGATLMNSFLFNVGLILLCSISVIQFCATAFAYYAQATAAQEIFGHNLQSLRGIKYLYKYNVFQIGFIVLAGLTFVYYAAFGWRRKKPSGRFQLSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="96309" PGL_stop="98757"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="96309" e_stop="96681"/>
            <exon e_start="98364" e_stop="98434"/>
            <exon e_start="98522" e_stop="98647"/>
            <exon e_start="98732" e_stop="98757"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.961" acc_prob="0.682" e_score="1.000"/>
          <exon-intron don_prob="0.893" acc_prob="0.974" e_score="0.930"/>
          <exon-intron don_prob="0.000" acc_prob="0.940" e_score="0.849"/>
          <exon-only e_score="0.962"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="96309" e_stop="96681" e_length="373"/>
          </exon>
          <intron i_serial="1" don_prob="0.961" acc_prob="0.682">
            <gDNA_intron_boundary i_start="96682" i_stop="98363" i_length="1682"/>
          </intron>
          <exon e_serial="2" e_score="0.930">
            <gDNA_exon_boundary e_start="98364" e_stop="98434" e_length="71"/>
          </exon>
          <intron i_serial="2" don_prob="0.893" acc_prob="0.974">
            <gDNA_intron_boundary i_start="98435" i_stop="98521" i_length="87"/>
          </intron>
          <exon e_serial="3" e_score="0.849">
            <gDNA_exon_boundary e_start="98522" e_stop="98647" e_length="126"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.940">
            <gDNA_intron_boundary i_start="98648" i_stop="98731" i_length="84"/>
          </intron>
          <exon e_serial="4" e_score="0.962">
            <gDNA_exon_boundary e_start="98732" e_stop="98757" e_length="26"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96309" stop="96681"/>
              <exon start="98364" stop="98434"/>
              <exon start="98522" stop="98647"/>
              <exon start="98732" stop="98757"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U340733" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGAAGCCACGTTCAGTTCAATCACGGACTCTTCGCATCACTTTAAAATTTTAAATTTATTTCTTTCCACAATTTTCTCCAAAATCACAATTTTTACATCTTCTTCAGAATGGAGGAATCAGATTGGAATCAGTCATTTTCGTCGGAGATTAGGGATGAGCAATTTACCGGTGATGTATCGATATCGCGACACGAGGAGGAGGTACCAGTGATTGACGATGATGATCGGCGGCCTCCGTTGCCGTTTCCTGAGAGGAATAATGTTTTTCACAATGCACCTTATTTTCCGGCGACTGACAATGAGGAAGTTGTGCGGTTAGACAGAGATGATACATGTTCTTACATTGTAGTTATTCTCACTTTCTGGCTCTTCG : GTAATTTGCAGCTTGGACCAAATTCCTCAATCCTGATAAAACCTAATTCCTTATTTGTGAAAAATATAAAG : GTGGAAGAGATGGATGATGCTAACAATAGACCAACGGTGTATGGGTTCTATGAAAATCCATCTCTTGATGTTCTTGCAACTTCTTCTGAAGCTTACATAACCTCTCTTCCTGCAAACACTAATAAG : CAATGGATATATTACTTGAATCAAGG</gDNA_template>
            <first_frame> *  S  H  V  Q  F  N  H  G  L  F  A  S  L  *  N  F  K  F  I  S  F  H  N  F  L  Q  N  H  N  F  Y  I  F  F  R  M  E  E  S  D  W  N  Q  S  F  S  S  E  I  R  D  E  Q  F  T  G  D  V  S  I  S  R  H  E  E  E  V  P  V  I  D  D  D  D  R  R  P  P  L  P  F  P  E  R  N  N  V  F  H  N  A  P  Y  F  P  A  T  D  N  E  E  V  V  R  L  D  R  D  D  T  C  S  Y  I  V  V  I  L  T  F  W  L  F   : G  N  L  Q  L  G  P  N  S  S  I  L  I  K  P  N  S  L  F  V  K  N  I  K  :  V  E  E  M  D  D  A  N  N  R  P  T  V  Y  G  F  Y  E  N  P  S  L  D  V  L  A  T  S  S  E  A  Y  I  T  S  L  P  A  N  T  N  K  :  Q  W  I  Y  Y  L  N  Q   </first_frame>
            <second_frame>  E  A  T  F  S  S  I  T  D  S  S  H  H  F  K  I  L  N  L  F  L  S  T  I  F  S  K  I  T  I  F  T  S  S  S  E  W  R  N  Q  I  G  I  S  H  F  R  R  R  L  G  M  S  N  L  P  V  M  Y  R  Y  R  D  T  R  R  R  Y  Q  *  L  T  M  M  I  G  G  L  R  C  R  F  L  R  G  I  M  F  F  T  M  H  L  I  F  R  R  L  T  M  R  K  L  C  G  *  T  E  M  I  H  V  L  T  L  *  L  F  S  L  S  G  S  S  :  V  I  C  S  L  D  Q  I  P  Q  S  *  *  N  L  I  P  Y  L  *  K  I  *  R :   W  K  R  W  M  M  L  T  I  D  Q  R  C  M  G  S  M  K  I  H  L  L  M  F  L  Q  L  L  L  K  L  T  *  P  L  F  L  Q  T  L  I  S :   N  G  Y  I  T  *  I  K  </second_frame>
            <third_frame>   K  P  R  S  V  Q  S  R  T  L  R  I  T  L  K  F  *  I  Y  F  F  P  Q  F  S  P  K  S  Q  F  L  H  L  L  Q  N  G  G  I  R  L  E  S  V  I  F  V  G  D  *  G  *  A  I  Y  R  *  C  I  D  I  A  T  R  G  G  G  T  S  D  *  R  *  *  S  A  A  S  V  A  V  S  *  E  E  *  C  F  S  Q  C  T  L  F  S  G  D  *  Q  *  G  S  C  A  V  R  Q  R  *  Y  M  F  L  H  C  S  Y  S  H  F  L  A  L  R :   *  F  A  A  W  T  K  F  L  N  P  D  K  T  *  F  L  I  C  E  K  Y  K   : G  G  R  D  G  *  C  *  Q  *  T  N  G  V  W  V  L  *  K  S  I  S  *  C  S  C  N  F  F  *  S  L  H  N  L  S  S  C  K  H  *  *   : A  M  D  I  L  L  E  S  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026I24.3" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96354" stop="96681"/>
                    <exon start="98364" stop="98434"/>
                    <exon start="98522" stop="98647"/>
                    <exon start="98732" stop="98755"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>549</number_coding_nucleotides>
                  <number_encoded_amino_acids>183</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NFKFISFHNFLQNHNFYIFFRMEESDWNQSFSSEIRDEQFTGDVSISRHEEEVPVIDDDDRRPPLPFPERNNVFHNAPYFPATDNEEVVRLDRDDTCSYIVVILTFWLFGNLQLGPNSSILIKPNSLFVKNIKVEEMDDANNRPTVYGFYENPSLDVLATSSEAYITSLPANTNKQWIYYLNQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="108205" PGL_stop="109274"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="108205" e_stop="108587"/>
            <exon e_start="108754" e_stop="109274"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="108205" e_stop="108587" e_length="383"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.998">
            <gDNA_intron_boundary i_start="108588" i_stop="108753" i_length="166"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="108754" e_stop="109274" e_length="521"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108205" stop="108587"/>
              <exon start="108754" stop="109274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327533" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGAGCCGAGTGGGATCCAGGAGAGAGTTTCGGCTGGGGGTTCCACAACAACCAGATCTGATGGAGATAATGTTAATTTGCAACCACTTGTTGCAATGTTTGGTACTTTAGTTGCCCAGGGTGAAAAGGCTGCAGCGTCTTTAGATATTTTAATCTCTAGTATATCAGCTGACTTGCTAGCAGATGTTGTGATGGCTAATATGAGAAATCTACCTTCAAATCAGCCAAAAGCTGTTGATGATGAAGAGCCACCTCTGAAGCCAGAGAATGTCTCTGATTTTAGACGATTATTATTACTGTTGATAGACGCTATTTCCCAGTCCACTATGTTAGCAGAACAAGATGAGAGAGCTGATCAAAATTTGGTCTCGATCGAGCCGGAG : CTGCAAAAAACTAAAGTGGCAGAAGAGCACCTTGATCCTGCCACTACTAATGGTACATTTGATGCCCTAAATTGTGCAAGTGAAGAAGCACCAGAATATGTAACTGAGCCTCTTTCTTCTACAAAGGGTACCCCTCAACTAATCGAAAATGATGTCTCATCCTTGCAATGTGATGTCGCTGACATTGAGAAAACTGAGGATTCCATACCTGGTCTAGATTCTGTAGCTCTCAAAGATGAAGAATCAGATCTTGTAGCTGTTTCAGCATTTGGTACAACTGAAGTTGAAGATGGTACTCAAGATCAAGGGTCTAGTGTAGTTAGGTCATCTTTGGAAGTAGTTCCATCAAATTCAACTGATAGGTCGGAGGAGCTTAGTCCAAAAGCAGCTGTAACAGATGTAACCAGCATGAACTCATCAACAGCTACTTCTATTGGGCTTTCTCCGCAGTTGCTTCTACCCAAGATATCTGCTCCAGTTATCAACCTCTCTGAAGAAGAGAAGGACAATTTACAGAAGTC</gDNA_template>
            <first_frame> K  S  R  V  G  S  R  R  E  F  R  L  G  V  P  Q  Q  P  D  L  M  E  I  M  L  I  C  N  H  L  L  Q  C  L  V  L  *  L  P  R  V  K  R  L  Q  R  L  *  I  F  *  S  L  V  Y  Q  L  T  C  *  Q  M  L  *  W  L  I  *  E  I  Y  L  Q  I  S  Q  K  L  L  M  M  K  S  H  L  *  S  Q  R  M  S  L  I  L  D  D  Y  Y  Y  C  *  *  T  L  F  P  S  P  L  C  *  Q  N  K  M  R  E  L  I  K  I  W  S  R  S  S  R  S :   C  K  K  L  K  W  Q  K  S  T  L  I  L  P  L  L  M  V  H  L  M  P  *  I  V  Q  V  K  K  H  Q  N  M  *  L  S  L  F  L  L  Q  R  V  P  L  N  *  S  K  M  M  S  H  P  C  N  V  M  S  L  T  L  R  K  L  R  I  P  Y  L  V  *  I  L  *  L  S  K  M  K  N  Q  I  L  *  L  F  Q  H  L  V  Q  L  K  L  K  M  V  L  K  I  K  G  L  V  *  L  G  H  L  W  K  *  F  H  Q  I  Q  L  I  G  R  R  S  L  V  Q  K  Q  L  *  Q  M  *  P  A  *  T  H  Q  Q  L  L  L  L  G  F  L  R  S  C  F  Y  P  R  Y  L  L  Q  L  S  T  S  L  K  K  R  R  T  I  Y  R  S  </first_frame>
            <second_frame>  R  A  E  W  D  P  G  E  S  F  G  W  G  F  H  N  N  Q  I  *  W  R  *  C  *  F  A  T  T  C  C  N  V  W  Y  F  S  C  P  G  *  K  G  C  S  V  F  R  Y  F  N  L  *  Y  I  S  *  L  A  S  R  C  C  D  G  *  Y  E  K  S  T  F  K  S  A  K  S  C  *  *  *  R  A  T  S  E  A  R  E  C  L  *  F  *  T  I  I  I  T  V  D  R  R  Y  F  P  V  H  Y  V  S  R  T  R  *  E  S  *  S  K  F  G  L  D  R  A  G   : A  A  K  N  *  S  G  R  R  A  P  *  S  C  H  Y  *  W  Y  I  *  C  P  K  L  C  K  *  R  S  T  R  I  C  N  *  A  S  F  F  Y  K  G  Y  P  S  T  N  R  K  *  C  L  I  L  A  M  *  C  R  *  H  *  E  N  *  G  F  H  T  W  S  R  F  C  S  S  Q  R  *  R  I  R  S  C  S  C  F  S  I  W  Y  N  *  S  *  R  W  Y  S  R  S  R  V  *  C  S  *  V  I  F  G  S  S  S  I  K  F  N  *  *  V  G  G  A  *  S  K  S  S  C  N  R  C  N  Q  H  E  L  I  N  S  Y  F  Y  W  A  F  S  A  V  A  S  T  Q  D  I  C  S  S  Y  Q  P  L  *  R  R  E  G  Q  F  T  E  V </second_frame>
            <third_frame>   E  P  S  G  I  Q  E  R  V  S  A  G  G  S  T  T  T  R  S  D  G  D  N  V  N  L  Q  P  L  V  A  M  F  G  T  L  V  A  Q  G  E  K  A  A  A  S  L  D  I  L  I  S  S  I  S  A  D  L  L  A  D  V  V  M  A  N  M  R  N  L  P  S  N  Q  P  K  A  V  D  D  E  E  P  P  L  K  P  E  N  V  S  D  F  R  R  L  L  L  L  L  I  D  A  I  S  Q  S  T  M  L  A  E  Q  D  E  R  A  D  Q  N  L  V  S  I  E  P  E  :  L  Q  K  T  K  V  A  E  E  H  L  D  P  A  T  T  N  G  T  F  D  A  L  N  C  A  S  E  E  A  P  E  Y  V  T  E  P  L  S  S  T  K  G  T  P  Q  L  I  E  N  D  V  S  S  L  Q  C  D  V  A  D  I  E  K  T  E  D  S  I  P  G  L  D  S  V  A  L  K  D  E  E  S  D  L  V  A  V  S  A  F  G  T  T  E  V  E  D  G  T  Q  D  Q  G  S  S  V  V  R  S  S  L  E  V  V  P  S  N  S  T  D  R  S  E  E  L  S  P  K  A  A  V  T  D  V  T  S  M  N  S  S  T  A  T  S  I  G  L  S  P  Q  L  L  L  P  K  I  S  A  P  V  I  N  L  S  E  E  E  K  D  N  L  Q  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026I24.3" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108207" stop="108587"/>
                    <exon start="108754" stop="109272"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>900</number_coding_nucleotides>
                  <number_encoded_amino_acids>300</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EPSGIQERVSAGGSTTTRSDGDNVNLQPLVAMFGTLVAQGEKAAASLDILISSISADLLADVVMANMRNLPSNQPKAVDDEEPPLKPENVSDFRRLLLLLIDAISQSTMLAEQDERADQNLVSIEPELQKTKVAEEHLDPATTNGTFDALNCASEEAPEYVTEPLSSTKGTPQLIENDVSSLQCDVADIEKTEDSIPGLDSVALKDEESDLVAVSAFGTTEVEDGTQDQGSSVVRSSLEVVPSNSTDRSEELSPKAAVTDVTSMNSSTATSIGLSPQLLLPKISAPVINLSEEEKDNLQK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 23 chains have been computed
$ 
$ memory statistics:
$ 38816 bytes spliced alignments in total
$ 18 spliced alignments have been stored
$ 2156 bytes was the average size of a spliced alignment
$ 21264 bytes predicted gene locations in total
$ 13 predicted gene locations have been stored
$ 1635 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 24 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 13:19:24
-->
