<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 13:15:49"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M8164" ref_strand="+" ref_description="SGN-M8164 C2_At4g02440 [cosii_markers]">
      <seq>tgaaaatcatcttcacacattccacaaacctacaaaaaggcttttctacctcttttgcccacaaaaatcactaaccaaattctcattcttgaatttgttacaacttacaagtgtttttgctgataaatttggtgtttaattccattggattgagcaaggggtttgattctattcatctttttttagatgtcgaattcatgtatggttgatggatttttctcaaaactatcagaggatttgattctcaatatatttttcaagctagaagatgatccaaggaactgggctcgtttatcttgtgtttcaacgaaatttgcatttctgattcatactatttgttacaaatcgaaatgctctgcaactattccttcggttgtttccgatctagtaagttcgacgtcttcgtgtcctccaggtgggtggtcttcactttacaagctagctgtatgctgtccgggtcttcatcaagctggtgttcttctggagaattctgattttgggcttgaacgtgaaattggtccggatgagagttattcgggtcgggttttccctaaagctgagctgattccttcttcatcgagtaataataataatcggtgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="61536" stop="60335"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61236" g_stop="60635" g_length="602"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="602" r_length="602" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-M8164" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M8164" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61236" e_stop="60635"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAATCATCTTCACACATTCCACAAACCTACAAAAAGGCTTTTCTACCTCTTTTGCCCACAAAAATCACTAACCAAATTCTCATTCTTGAATTTGTTACAACTTACAAGTGTTTTTGCTGATAAATTTGGTGTTTAATTCCATTGGATTGAGCAAGGGGTTTGATTCTATTCATCTTTTTTTAGATGTCGAATTCATGTATGGTTGATGGATTTTTCTCAAAACTATCAGAGGATTTGATTCTCAATATATTTTTCAAGCTAGAAGATGATCCAAGGAACTGGGCTCGTTTATCTTGTGTTTCAACGAAATTTGCATTTCTGATTCATACTATTTGTTACAAATCGAAATGCTCTGCAACTATTCCTTCGGTTGTTTCCGATCTAGTAAGTTCGACGTCTTCGTGTCCTCCAGGTGGGTGGTCTTCACTTTACAAGCTAGCTGTATGCTGTCCGGGTCTTCATCAAGCTGGTGTTCTTCTGGAGAATTCTGATTTTGGGCTTGAACGTGAAATTGGTCCGGATGAGAGTTATTCGGGTCGGGTTTTCCCTAAAGCTGAGCTGATTCCTTCTTCATCGAGTAATAATAATAATCGGTGTGA</genome_strand>
        <mrna_strand>TGAAAATCATCTTCACACATTCCACAAACCTACAAAAAGGCTTTTCTACCTCTTTTGCCCACAAAAATCACTAACCAAATTCTCATTCTTGAATTTGTTACAACTTACAAGTGTTTTTGCTGATAAATTTGGTGTTTAATTCCATTGGATTGAGCAAGGGGTTTGATTCTATTCATCTTTTTTTAGATGTCGAATTCATGTATGGTTGATGGATTTTTCTCAAAACTATCAGAGGATTTGATTCTCAATATATTTTTCAAGCTAGAAGATGATCCAAGGAACTGGGCTCGTTTATCTTGTGTTTCAACGAAATTTGCATTTCTGATTCATACTATTTGTTACAAATCGAAATGCTCTGCAACTATTCCTTCGGTTGTTTCCGATCTAGTAAGTTCGACGTCTTCGTGTCCTCCAGGTGGGTGGTCTTCACTTTACAAGCTAGCTGTATGCTGTCCGGGTCTTCATCAAGCTGGTGTTCTTCTGGAGAATTCTGATTTTGGGCTTGAACGTGAAATTGGTCCGGATGAGAGTTATTCGGGTCGGGTTTTCCCTAAAGCTGAGCTGATTCCTTCTTCATCGAGTAATAATAATAATCGGTGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M3175" ref_strand="+" ref_description="SGN-M3175 cLEB-8-N3 [est_clones]">
      <seq>gcacgaggaccaatggaagaggatgcccctcaagggaaaaatgaggaagaggagttcaatactgggccactttctgtcctcatgatgagtgttaagaataacacacaggtgctcatcaactgtaggaacaacaggaaacttcttggtcgtgtgagagcatttgatcgtcactgcaatatggtgcttgaaaatgttagagaaatgtggactgaggtgcccaagactggaaaaggaaaaaagaaagctgttgctgttaacaaagataggtttatcagcaagatgttccttcggggagattctgtgatcattgtcctccgaaatcctaagaggagaggtgaattggatttctgtgctttggagcaaaacttgtaagcagctaggatttggaccagctctgtataaccttttcttattcgggaatttggctaggcagaacaccacctttgattgctgtaagacttgata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="95254" stop="91813"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94950" g_stop="94926" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="30" r_length="25" r_score="0.920"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94925" i_stop="93847" i_length="1079">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93846" g_stop="93769" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="108" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93768" i_stop="93510" i_length="259">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93509" g_stop="93405" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="213" r_length="105" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93404" i_stop="93211" i_length="194">
            <donor d_prob="0.639" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93210" g_stop="93090" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="334" r_length="121" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="93089" i_stop="92243" i_length="847">
            <donor d_prob="0.952" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="92242" g_stop="92113" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="465" r_length="131" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-M3175" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M3175" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94950" e_stop="94926"/>
          <exon e_start="93846" e_stop="93769"/>
          <exon e_start="93509" e_stop="93405"/>
          <exon e_start="93210" e_stop="93090"/>
          <exon e_start="92242" e_stop="92113"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGACCAATGGAAGAGGATGCCCCTGTAAGTTAGCTTACTTTGCTAGTATTTTGCCCTATACAAAGCTCTCATTGTTTATTTTTCTCATTTTTTCATTGGCATAATCTGTGTTGTGATCTATTTTGTGTTTTAGGGGCTGTCTACTGCTTAGTACTTGTTTTCATTTTCCTTTCTGTTCACCTCAATGCGATGCATTCAATTAGATTTCTTTTGTTGGTAGCCTTGATCCTGCTTTACACGTTACAACTGAAAAGTTTCTAGCATACATCTTTTATTTTATCATATGGAGAATATGTTTATACCTCCCTTTTCAAAGCAAGATCATTGAATTGTTTGATCTGTAGAATATTTTTCAGCACATAACATCAAGTCATTGAATTTTTTTTGGTTAAGTCGTTTGAGTTCACCACTCAAAACAAATGACAAAATCAATTAGAACTTTAAAATAACAATGTAGCTAGGATGAATTTTTCTGTAAAAACTAGAACCTATCAAGTGTAAAAATTATTAGTTGAATTAGTAGAATTTATTTTCTACAGTTGTTTTGTTCCCACCTTCACACAAGTGTTATGTCAGTTTTTCTCATTTACCACATTGGATAACCCAGAAGCTAGGTCCGAACTTTGTAGTTCTCCCTTAACAGACATCCTATTGACATTTTTCTTATATTCTTGGTATGTTTATTTATACATGTACTCTTGTTCATTTTCCATTTGAGTTGCTTCTTGTTTGCCTTCCCGATGCCTAAAGTGCTTAGGTCTAAACTTTGTAGTTCTCCTTTAACAGACATCCTATTGACATTTCGTCTTTTATTCTTGGTATGTTTATTTATACATGTACTCTTGTTGTTCATTTTCCATTTGTGTTGCTTCTTATCTGCCTTCCCGATGTCAAAGTGCTTTGCTTCAAAGTTATCTAGATTAAGCACATAGTGAAAGAGTGTATAATTGGTAGATTATCTAGCTTAAGTACATAGTGAAAAAGTGTATGCCCTTCTATGTTGGTGTGATAGAGGAATGAACCTTATCAGTCCCAGTGAATATGATTTGCTTATCAGATTTTGTGAAAGATGTCTTATGTTTGCCTATGGATCTTTTGTCTAGCAAGGGAAAAATGAGGAAGAGGAGTTCAATACTGGGCCACTTTCTGTCCTCATGATGAGTGTTAAGAATAACACACAGGTATCTAATATCTTTAGCACCTACAACTGTGTCTTTCTTCATGTCGTGTTTATTTATCAATTTTAATTGTTAAAAAGAGAGATAAAATCTATCCTGGAGCCTTGTTTATGTTGACAATTTACTTTTTAAAGTCATGCCGGTATACTTCCTCATTAATCTTAGATTTAAATACTATAGAAAAAGATGCAAGCTTCGGTTTTGTATGTGGAAGGCATCAGCTTTGTGCTTGTTATTTTACAGATATTTTTTCTGGATCTAGGTGCTCATCAACTGTAGGAACAACAGGAAACTTTTTGGTCGTGTGAGAGCATTTGATTGTCACTGCAATATGGTGCTTGAAAATGTTAGAGAAATGTGGACTGAGGTTTGTTTGTTCTTGACTTAATCAACTTTTTGGGACAATGTGTATTGTGTCTTGGATCTGTATCTTGCGTCAAAAAGCTCCAGTTACCAAGATTGTTTATATTATTTTTCAGGTTCCTAAGGGCAATGTGTCTTGGATTTGAAACTTGTACAAAAAGACTCCACTTAACAAAGTTGTTTATGTTTATTCTTCAGGTGCCCAAGACTGGAAAAGGAAAAAAGAAAGCTGTTGCTGTTAACAAAGATAGGTTTATCAGCAAGATGTTCCTTCGGGGAGATTCTGTGATCATTGTCCTCCGAAATCCTAAGTAGAGAGGTACTGTTGGATCTTTGACATAGTGGTTGGAGTAATTTTCTTTGAATTATGAGCTAGTTCCTTTAATTGGTCCATGTTTGAAGTGCAATATCCTTTTAACTTGCTATTATGTAATCAAATGTTTGGTATATAAGAACTGTAAATGCTAAGTAATATTTGTTGAATCCATTATTGTGAAATTTATCAATTTATTATCATAAATAAAATTTGGAACTTCAAAAATGATTAACTCTTAGCATTTAAATAATTGTCTTTTCTGATGAACTATGAAGATCTATAATAAATGAAATATAACGTTCCTATAAATATCAGAAAAATGTGTATACATATGATAGGAAGCTCAAGGTTGGGATCAGGAAACAAACTAGTGGATTAAAATCTGCAAGTTCTATTCTCCAAGTTTAGCTAATGAAGTATGAAGACTGTAAAAATGGTACTGAAAGAACTAACCTCATGCTCGAAAAACTCTCCTGCTAGAGCAGTGCATGGGATTAGGAAGAGCATGAGAACATATATTGTTTTCACTGCTTCCCTTTTATCTCTTGTTGAGCAAAAGATCTATCGGTAACATCATCTCTTACCTTACAAGGTAGGGGAAAGTTTTGTGTACACGTTACCCTCCTCACCAAACCCCACTTGTTGGGATTCATTCTGGGGTTTGTTGTTTTTGGACATATTTCTGTCTGCATACAAAAATGTTCCATTTCGTCTTCTTTTTTCTACTTGAAATGCATTTCTGTGTGGTTATGCACATTCTTAATTTTTCCCTTGGTGTTCCCACATTTTTGTTTGCCTGTATTTAATTATCTGATCGTTGGTAGTAATTCAATACACTTGTGTACTGCAGGTGAATTGGATTTCTGTGCTTTGGAGCAAAACTTGTAAGCAGCTAGGATTTGGACCAGCTCTGTATAACC-TTTCGTATTCGGGAATTTGGCTAGGCAGAACACCACCTTTGATTGCTGTAAGACTTGATA</genome_strand>
        <mrna_strand>AGGACCAATGGAAGAGGATGCCCCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGGAAAAATGAGGAAGAGGAGTTCAATACTGGGCCACTTTCTGTCCTCATGATGAGTGTTAAGAATAACACACAG...................................................................................................................................................................................................................................................................GTGCTCATCAACTGTAGGAACAACAGGAAACTTCTTGGTCGTGTGAGAGCATTTGATCGTCACTGCAATATGGTGCTTGAAAATGTTAGAGAAATGTGGACTGAG..................................................................................................................................................................................................GTGCCCAAGACTGGAAAAGGAAAAAAGAAAGCTGTTGCTGTTAACAAAGATAGGTTTATCAGCAAGATGTTCCTTCGGGGAGATTCTGTGATCATTGTCCTCCGAAATCCTAAGAGGAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATTGGATTTCTGTGCTTTGGAGCAAAACTTGTAAGCAGCTAGGATTTGGACCAGCTCTGTATAACCTTTTCTTATTCGGGAATTTGGCTAGGCAGAACACCACCTTTGATTGCTGTAAGACTTGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M7562-2" ref_strand="+" ref_description="SGN-M7562-2 C2_At2g47590-2 [cosii_markers]">
      <seq>ttttttttttttttttcttttcaaaaataatctctctattttagatagttatgttgacttttttaaatttcatatcgattcaaaatcagacaaataaattgactcgtacaaaaatttatccactcttaaattgatacatccacctctaccaacctctataaacacctcacccacctaacacaacaaataggcaaaaaaataaacatagtattattatattgacaccaactttaacaaaaccaacaaaattctttggagggtattaagccgtcgcttatcttcatcttcttcctctgattctgtacatttttctcaccggaaaactcatcagaaatggatccaaagaatcaattttccgataactcagaagcccaaacacctcaagaagaacaacagcagacacccattttaccgatagcttcaatttcacttgctttatccacaatccttccaacccatttccttaatcctcctaaaatctcaacccttttcaacaaaccaaacaaagtcaaaatcccaactcaagtttcatctcttacaaatctctcactttcagcttcttctcttccacctacaaattccaaattcaagtccactatttctgctaaccctcttcagaatactctaactcttaaccctcttcgtccttctgagccttctaatgctgctgggcttcgacgagcgtcgattgtttggttccgtaacgatcttcgtgttcatgataatgagtgtcttaacgcggctcataatgagtccatgtctgtattggctgtttactgttttgacccgagagattatggaaaatcctcatctgggtttgataaaactgggccgtatagggctagttttttgattgattctgttgctgaccttaggaagaatctacaggcaagagggtctgatcttgttgttagaattgggaagccggagactgtgttggtggaattagctaaagctgttggagctgaagctgtgtatgctcatagggaggtttcacatgatgaggttaaaggggaagataagattgatgctgtaatgaaggatgagggtttggaggtgaagtatttctggggtagtacattgtatcatgttgatgatttgccttttaagttggagcaaatgcctacgaattacggaggctttagggagaaagtgcagggattggaggtaaggaagacaattgaggcattggatcaattgaggggattgcctgctagaggtgatgtggaacctggggagattccttcgttggttgatttggggctcaatcctagtgccaccatgggtcagaatggaaaatcagctgctaatgcttcccttgtgggaggagagaatgaagcactgcaaagacttagaaaatttgcagcagaatgtcaggcccaacccagtaaggaaaacaaggatggcacaaatgacagcatatatggtgcaaacttttcttgcaaaatatcgccttggttagctatgggatgtctctcaccccgttccatgtttgatgaattgaagaagtccacttcaagaacgatttctgctgcctctgccaagaaagatggtggtagtggcactgggctgaactggctgatgtacgagctgttatggagggattttttcagattcatcaccaagaaatatagtgctgcaaaacaaaatagtgctgctccagtaactacttgcgtaggagctgctgcttaacgatggtatactcaaaaggagaatgaaggtttcctttttgtagcttgatttattttttccggaagtttagctgtggaatgttagagttggactgccattgaattgaagcattttttcttttgacaataagtgttgagacataaaagaatttgtcgccatttctagcaagtcgctctacaatccttcttatgctagtatttatatatttttgatttcatctgtagttgaaacaggtgtgataacaaacatacctgtagttgaaatatgtgttccatgtttgagattaccatccatcttgaacccgcggagagtatccttgagcatcagatgatttactattgatactcatttcaatgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="120721" stop="116558"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120422" g_stop="119153" g_length="1270"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="1290" r_length="1271" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119152" i_stop="117854" i_length="1299">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117853" g_stop="117624" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1291" r_stop="1520" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117623" i_stop="117532" i_length="92">
            <donor d_prob="0.881" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117531" g_stop="117439" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1521" r_stop="1613" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117438" i_stop="117297" i_length="142">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117296" g_stop="116851" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="1614" r_stop="2059" r_length="446" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="19" polyA_stop="1"/>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-M7562-2" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>2039</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M7562-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120422" e_stop="119153"/>
          <exon e_start="117853" e_stop="117624"/>
          <exon e_start="117531" e_stop="117439"/>
          <exon e_start="117296" e_stop="116851"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAAAATAATCTCTCTATTTTAGATAGTTAT-TTGATTTTCTTAAATTTCATATCGATTCAAAATCAGACAAATAAATTGACTCGTACAAAAATTTATCCACTCTTAAATTGATACATCCACCTCTACCAACCTCTATAAACACCTCACCCACCTAACACAACAAATAGGCAAAAAAATAAACATAGTATTATTATATTGACACCAACTTTAACAAAACCAACAAAATTCTTTGGAGGGTATTAAGCCGTCGCTTATCTTCATCTTCTTCCTCTGATTCTGTACATTTTTCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGCAGACACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTATTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGAAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGATTCTGTTGCTGACCTTAGGAAGAATCTACAGGCAAGAGGGTCTGATCTTGTTGTTAGAATTGGGAAGCCGGAGACTGTGTTGGTGGAATTAGCTAAAGCTGTTGGAGCTGAAGCTGTGTATGCTCATAGGGAGGTTTCACATGATGAGGTTAAAGGGGAAGATAAGATTGATGCTGTAATGAAGGATGAGGGTTTGGAGGTGAAGTATTTCTGGGGTAGTACATTGTATCATGTTGATGATTTGCCTTTTAAGTTGGAGCAAATGCCTACGAATTACGGAGGCTTTAGGGAGAAAGTGCAGGGATTGGAGGTAAGGAAGACAATTGAGGCATTGGATCAATTGAGGGGATTGCCTGCTAGAGGTGATGTGGAACCTGGGGAGATTCCTTCGTTGGTTGATTTGGGGCTCAATCCTAGTGCCACCATGGGTCAGGTATTACTTTGTTCGATCTCAAATATCGTAGAGGATTTAGGTTTATTCAGTATTGGATGAAAGTAGTTTTACCTTTGATGTCAAAGAACTTGTAATTTAACTGAAATGACATATTTGCGAGTGTTGGAATGAAACTGGTGTAAATGTAGTGTAACCGATAATAAGGATGATTCATATAGTTGAACCCAACAAGTTTGAGATTGAGCTACACTAGTAGTCCTTTAGTTTCACGTAGTTTTCCGTTTCTTAGACACTTCATTGGAAGTGGTAGAGATGATCAAGATTCCATTTTTATACGAATGGAAGTGATTCAAGTCAGAAATAACTGATGGTTTAATTCAACATATCTCTTGTATATGTATTCTGAACATTTGTTAGATAAAACCACATGTTTTAAGTAGGTTTAGTATTTGGCGTTTGAACATCAGTAATTTAAATGATCCTTGCTCTATCGTGTAGTGTCCTTCTATAGTTGTGTGCAGTGTTCAGGAAAGCAAGGCGAAGCAATGCGAGCCTTCTACGCTTCACAAACTAGAATGAGTATGTGAGTGCTTCATCGCCTAAAGCGTGAAGCAGGGCCTTATCACTTTTTTCCACTTCCTACTTCCCTGAACACTGGTTGTGTACACTGAGTATCCAGCTCATAGCTGTGACATTTTGTTGATCAATATGTTAATGTACTTCTTATCAGGCCGTCACCAACTAGGACACTACACACCAACTATAGTGCTCATAGAATAGACCAAAGAACTCTTATTTGTTAGCCTGAGAATATGTAATGTAGAAAGAACATCTTTTAGCCACGTTTGGAGGTTACTTTTTTAGTATTGCCTGTAGCACAGGCCACAGTGCACAATCACTTAAGAACTGTTGCTTGAATTTTGTAATTGCCTTACTGTATTGTAACTTTGGAACTGTAAGTTGTTTCACATCACAAACTAGTCAAACAAAGTTTATTTGTTTCAGTTACTTTGCAAACTATGGCAAACATGAACATTTCTTTATCTTTGCATAATCATTTGCATTTGCACATCATTTAGAATGACTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAGAGACTTCAATTTTGTAGTTGCCATACTGTATTTTTCACCGACTTGAATTTTGTAATTGCTGTACTGTATTTAAACTTTCGGAGTTGTCAGTTGTTTAACATCACAAACTAGTCAAAAAAAGTTGATTCATTTCAGTTATTTCGCTAACTATTGTAAACATGAACATTTCTTTATCTTGGTATACTTAATCATTTGCATTTGCCAACCATTTAGAATGGAAAATCAGCTGCTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAAAGACTTAGAAAATTTGCAGCAGAATGTCAGGCCCAACCCAGTAAGGAAAACAAGGATGGCACAAATGACAGCATATATGGTGCAAACTTTTCTTGCAAAATATCGCCTTGGTTAGCTATGGGATGTCTCTCACCCCGTTCCATGTTTGATGAATTGAAGAAGTCCACTTCAAGGTTAATGTCTTGTCAATAGTTTTCTTATCCTGATACTAATGCCTGTGAGACCAATATCACTGGCTAACGCTACATTGGTTGTTGTGCTGCAGAACGATTTCTGCTGCCTCTGCCAAGAAAGATGGTGGTAGTGGCACTGGGCTGAACTGGCTGATGTACGAGCTGTTATGGAGGGATTTTTTCAGGTAATTTAGCATGCAACTTAGCTCCTATGATTGAGATGCTTGTTTCAGTTTCGTATAGTGTGATACTCGTTCCATCCTTTATGAAACAATTCCCGTCCTTTAAAATTATTCCTTGGATAACATTCTGTTTTCTGAATGCCAGATTCATCACCAAGAAATATAGTGCTGCAAAACAAAATAGTGCTGCTCCAGTAACTACTTGCGTAGGAGCTGCTGCTTAACGATGGTATACTCAAAAGGAGAATGAAGGTTTCCTTTTTGTAGCTTGATTTATTTTTTCCGGAAGTTTAGCTGTGGAATGTTAGAGTTGGACTGCCATTGAATTGAAGCATTTTTTCTTTTGACAATAAGTGTTGAGACATAAAAGAATTTGTCGCCATTTCTAGCAAGTCGCTCTACAATCCTTCTTATGCTAGTATTTATATATTTTTGATTTCATCTGTAGTTGAAACAGGTGTGATAACAAACATACCTGTAGTTGAAATATGTGTTCCATGTTTGAGATTACCATCCATCTTGAACCCGCGGAGAGTATCCTTGAGCATCAGATGATTTACTATTGATACTCATTTCAATGTAAACTAGTTC</genome_strand>
        <mrna_strand>TTCAAAAATAATCTCTCTATTTTAGATAGTTATGTTGACTTTTTTAAATTTCATATCGATTCAAAATCAGACAAATAAATTGACTCGTACAAAAATTTATCCACTCTTAAATTGATACATCCACCTCTACCAACCTCTATAAACACCTCACCCACCTAACACAACAAATAGGCAAAAAAATAAACATAGTATTATTATATTGACACCAACTTTAACAAAACCAACAAAATTCTTTGGAGGGTATTAAGCCGTCGCTTATCTTCATCTTCTTCCTCTGATTCTGTACATTTTTCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGCAGACACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTATTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGAAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGATTCTGTTGCTGACCTTAGGAAGAATCTACAGGCAAGAGGGTCTGATCTTGTTGTTAGAATTGGGAAGCCGGAGACTGTGTTGGTGGAATTAGCTAAAGCTGTTGGAGCTGAAGCTGTGTATGCTCATAGGGAGGTTTCACATGATGAGGTTAAAGGGGAAGATAAGATTGATGCTGTAATGAAGGATGAGGGTTTGGAGGTGAAGTATTTCTGGGGTAGTACATTGTATCATGTTGATGATTTGCCTTTTAAGTTGGAGCAAATGCCTACGAATTACGGAGGCTTTAGGGAGAAAGTGCAGGGATTGGAGGTAAGGAAGACAATTGAGGCATTGGATCAATTGAGGGGATTGCCTGCTAGAGGTGATGTGGAACCTGGGGAGATTCCTTCGTTGGTTGATTTGGGGCTCAATCCTAGTGCCACCATGGGTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAAATCAGCTGCTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAAAGACTTAGAAAATTTGCAGCAGAATGTCAGGCCCAACCCAGTAAGGAAAACAAGGATGGCACAAATGACAGCATATATGGTGCAAACTTTTCTTGCAAAATATCGCCTTGGTTAGCTATGGGATGTCTCTCACCCCGTTCCATGTTTGATGAATTGAAGAAGTCCACTTCAAG............................................................................................AACGATTTCTGCTGCCTCTGCCAAGAAAGATGGTGGTAGTGGCACTGGGCTGAACTGGCTGATGTACGAGCTGTTATGGAGGGATTTTTTCAG..............................................................................................................................................ATTCATCACCAAGAAATATAGTGCTGCAAAACAAAATAGTGCTGCTCCAGTAACTACTTGCGTAGGAGCTGCTGCTTAACGATGGTATACTCAAAAGGAGAATGAAGGTTTCCTTTTTGTAGCTTGATTTATTTTTTCCGGAAGTTTAGCTGTGGAATGTTAGAGTTGGACTGCCATTGAATTGAAGCATTTTTTCTTTTGACAATAAGTGTTGAGACATAAAAGAATTTGTCGCCATTTCTAGCAAGTCGCTCTACAATCCTTCTTATGCTAGTATTTATATATTTTTGATTTCATCTGTAGTTGAAACAGGTGTGATAACAAACATACCTGTAGTTGAAATATGTGTTCCATGTTTGAGATTACCATCCATCTTGAACCCGCGGAGAGTATCCTTGAGCATCAGATGATTTACTATTGATACTCATTTCAATGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M7562-3" ref_strand="+" ref_description="SGN-M7562-3 C2_At2g47590-3 [cosii_markers]">
      <seq>caccagctttaacaaaccaacaaattctttggagggcattaagccgtagcttatctccatcgtcatcttcttcttcctctgtacatttctcaccggaaaactcatcggaaatggatcccaggaatcaattttccgataacccagaaacccaaaaacctcaagaagaacaacaacaacacctacccattttaccgatagcttcaatttctcttgctttatccacaatccttccaacccatttccttaatccccctaaaatctcaacccttttcaacaaacccaacaaagtcaaaatcccaactcaagtttcatctctttcaaatctctcactttcagcttcttctcttccacctacaaaatccaatttcaagtccaccatttctgctaaccctcttcaaaacactctaactcttaaccctcttcgtccttctgagccttctaatgctgctgggcttcgacgagcgtcgattgtttggttccgtaacgatcttcgtgttcatgataatgagtgtcttaacgcggctcataatgagtccatgtctgttttggctgtttactgtttcgacccgagagattatgggaaatcctcatctgggtttgataaaactgggccgtatagggctagttttttgattgaatctgttgctgaccttaggaagaatctacaggcaagagggtctgatcttgttgttagaattgggaagccggagactgtgttggtggaattagctaaagctgttggagctgaagctgtgtatgctcatagggaggtttcacatgatgaggttaaaggggaagataagattgatgctgtaatgaaggatgagggtttggaggtgaagtatttctggggtagtacattgtatcatgttgatgatttgccttttaagttggagcaaatgcccacgaattacggagggtttagggaaaaagtgcagggattggaggtaaggaagacaattgaggcattggatcaattgaggggattgcctgctagaggtgatgtggaacctggggagattccttctttggttgatttggggctcaatcctagtgccacaatgggtcagaatggaaaaccagctgctaatgcttcccttgtgggaggagagaatgaagcactgcagagacttagaaagtttgcagcagaatgtcaggtccaacccaataaggaaaacaaggatggcacaactgacagcatatatggtgcaaatttttcttgcaaaatatcaccttggttagctatgggatgtctctcaccccgttccatgtttgatgaattgaaaaagtccacttcaagaacgatttctgctgcctctggcaagaaagatggtggtagtggcactgggctgaactggctgatgtacgagctgttatggagggatttttttcaggttcatcaccaagaaatatagtgctgcaaaacaaaatagtgctactccagtaactgcttgtgtaggagctgctgcttaacgatggtatattcaaaaggagaatgaagttttcctttttgtagcttgatttatttttcccagaagtttagccgtggaatgttagagttgaactgtcattagattgaagcattcatcaatggtacattttgtcttttgacaataagtgttggatataaaaaatttgtcgccatttctagccagttgctctacaatccttcttatgctaccaatatttaatttttttctaaatttgatctgtagttgaaaaaggtgtataacaaaaattcctgtagttgaaatatgtgttccatgtttgagataactagttgttggtgatatgtcgactaaacttctagacattggaagtttttttagagttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="120520" stop="116629"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120220" g_stop="119153" g_length="1068"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1070" r_length="1070" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119152" i_stop="117854" i_length="1299">
            <donor d_prob="0.941" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117853" g_stop="117624" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1071" r_stop="1300" r_length="230" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117623" i_stop="117532" i_length="92">
            <donor d_prob="0.881" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117531" g_stop="117439" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1301" r_stop="1394" r_length="94" r_score="0.968"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117438" i_stop="117297" i_length="142">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.977" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117296" g_stop="116936" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="1395" r_stop="1772" r_length="378" r_score="0.812"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1834" polyA_stop="1844"/>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-M7562-3" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>1752</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M7562-3" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120220" e_stop="119153"/>
          <exon e_start="117853" e_stop="117624"/>
          <exon e_start="117531" e_stop="117439"/>
          <exon e_start="117296" e_stop="116936"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCAACTTTAACAAAACCAACAAAATTCTTTGGAGGGTATTAAGCCGTCGCTTATCTTCATCTTCTTCCTCTGATT-CTGTACATTTTTCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGC-AGA-C-ACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTATTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGAAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGATTCTGTTGCTGACCTTAGGAAGAATCTACAGGCAAGAGGGTCTGATCTTGTTGTTAGAATTGGGAAGCCGGAGACTGTGTTGGTGGAATTAGCTAAAGCTGTTGGAGCTGAAGCTGTGTATGCTCATAGGGAGGTTTCACATGATGAGGTTAAAGGGGAAGATAAGATTGATGCTGTAATGAAGGATGAGGGTTTGGAGGTGAAGTATTTCTGGGGTAGTACATTGTATCATGTTGATGATTTGCCTTTTAAGTTGGAGCAAATGCCTACGAATTACGGAGGCTTTAGGGAGAAAGTGCAGGGATTGGAGGTAAGGAAGACAATTGAGGCATTGGATCAATTGAGGGGATTGCCTGCTAGAGGTGATGTGGAACCTGGGGAGATTCCTTCGTTGGTTGATTTGGGGCTCAATCCTAGTGCCACCATGGGTCAGGTATTACTTTGTTCGATCTCAAATATCGTAGAGGATTTAGGTTTATTCAGTATTGGATGAAAGTAGTTTTACCTTTGATGTCAAAGAACTTGTAATTTAACTGAAATGACATATTTGCGAGTGTTGGAATGAAACTGGTGTAAATGTAGTGTAACCGATAATAAGGATGATTCATATAGTTGAACCCAACAAGTTTGAGATTGAGCTACACTAGTAGTCCTTTAGTTTCACGTAGTTTTCCGTTTCTTAGACACTTCATTGGAAGTGGTAGAGATGATCAAGATTCCATTTTTATACGAATGGAAGTGATTCAAGTCAGAAATAACTGATGGTTTAATTCAACATATCTCTTGTATATGTATTCTGAACATTTGTTAGATAAAACCACATGTTTTAAGTAGGTTTAGTATTTGGCGTTTGAACATCAGTAATTTAAATGATCCTTGCTCTATCGTGTAGTGTCCTTCTATAGTTGTGTGCAGTGTTCAGGAAAGCAAGGCGAAGCAATGCGAGCCTTCTACGCTTCACAAACTAGAATGAGTATGTGAGTGCTTCATCGCCTAAAGCGTGAAGCAGGGCCTTATCACTTTTTTCCACTTCCTACTTCCCTGAACACTGGTTGTGTACACTGAGTATCCAGCTCATAGCTGTGACATTTTGTTGATCAATATGTTAATGTACTTCTTATCAGGCCGTCACCAACTAGGACACTACACACCAACTATAGTGCTCATAGAATAGACCAAAGAACTCTTATTTGTTAGCCTGAGAATATGTAATGTAGAAAGAACATCTTTTAGCCACGTTTGGAGGTTACTTTTTTAGTATTGCCTGTAGCACAGGCCACAGTGCACAATCACTTAAGAACTGTTGCTTGAATTTTGTAATTGCCTTACTGTATTGTAACTTTGGAACTGTAAGTTGTTTCACATCACAAACTAGTCAAACAAAGTTTATTTGTTTCAGTTACTTTGCAAACTATGGCAAACATGAACATTTCTTTATCTTTGCATAATCATTTGCATTTGCACATCATTTAGAATGACTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAGAGACTTCAATTTTGTAGTTGCCATACTGTATTTTTCACCGACTTGAATTTTGTAATTGCTGTACTGTATTTAAACTTTCGGAGTTGTCAGTTGTTTAACATCACAAACTAGTCAAAAAAAGTTGATTCATTTCAGTTATTTCGCTAACTATTGTAAACATGAACATTTCTTTATCTTGGTATACTTAATCATTTGCATTTGCCAACCATTTAGAATGGAAAATCAGCTGCTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAAAGACTTAGAAAATTTGCAGCAGAATGTCAGGCCCAACCCAGTAAGGAAAACAAGGATGGCACAAATGACAGCATATATGGTGCAAACTTTTCTTGCAAAATATCGCCTTGGTTAGCTATGGGATGTCTCTCACCCCGTTCCATGTTTGATGAATTGAAGAAGTCCACTTCAAGGTTAATGTCTTGTCAATAGTTTTCTTATCCTGATACTAATGCCTGTGAGACCAATATCACTGGCTAACGCTACATTGGTTGTTGTGCTGCAGAACGATTTCTGCTGCCTCTGCCAAGAAAGATGGTGGTAGTGGCACTGGGCTGAACTGGCTGATGTACGAGCTGTTATGGAGGGA-TTTTTTCAGGTAATTTAGCATGCAACTTAGCTCCTATGATTGAGATGCTTGTTTCAGTTTCGTATAGTGTGATACTCGTTCCATCCTTTATGAAACAATTCCCGTCCTTTAAAATTATTCCTTGGATAACATTCTGTTTTCTGAATGCCAGATTCATCACCAAGAAATATAGTGCTGCAAAACAAAATAGTGCTGCTCCAGTAACTACTTGCGTAGGAGCTGCTGCTTAACGATGGTATACTCAAAAGGAGAATGAAGGTTTCCTTTTTGTAGCTTGATTTATTTTTTCCGGAAGTTTAGCTGTGGAATGTTAGAGTTGGACTG-C----CATTG-A--A-T--TGAA--G--CATTTTTTCTTTTGACAATAAGTGTTGAGACATAAAAGAATTTGTCGCCATTTCTAGCAAGTCGCTCTACAATCCTTCTTATGCT---AGTATTT-ATATATTT-TTGATTTCATCTGTAGTTGAAACAGGTGTGATAACAAACATACCTGTAGTTGAAATATGTGTTCCATGTTTGAG</genome_strand>
        <mrna_strand>CACCAGCTTTAAC-AAACCAAC-AAATTCTTTGGAGGGCATTAAGCCGTAGCTTATCTCCATCGTCATCTTCTTCTTCCTCTGTACATTTCTCACCGGAAAACTCATCGGAAATGGATCCCAGGAATCAATTTTCCGATAACCCAGAAACCCAAAAACCTCAAGAAGAACAACAACAACACCTACCCATTTTACCGATAGCTTCAATTTCTCTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCCCCTAAAATCTCAACCCTTTTCAACAAACCCAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTTCAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAAATCCAATTTCAAGTCCACCATTTCTGCTAACCCTCTTCAAAACACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTTTTGGCTGTTTACTGTTTCGACCCGAGAGATTATGGGAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGAATCTGTTGCTGACCTTAGGAAGAATCTACAGGCAAGAGGGTCTGATCTTGTTGTTAGAATTGGGAAGCCGGAGACTGTGTTGGTGGAATTAGCTAAAGCTGTTGGAGCTGAAGCTGTGTATGCTCATAGGGAGGTTTCACATGATGAGGTTAAAGGGGAAGATAAGATTGATGCTGTAATGAAGGATGAGGGTTTGGAGGTGAAGTATTTCTGGGGTAGTACATTGTATCATGTTGATGATTTGCCTTTTAAGTTGGAGCAAATGCCCACGAATTACGGAGGGTTTAGGGAAAAAGTGCAGGGATTGGAGGTAAGGAAGACAATTGAGGCATTGGATCAATTGAGGGGATTGCCTGCTAGAGGTGATGTGGAACCTGGGGAGATTCCTTCTTTGGTTGATTTGGGGCTCAATCCTAGTGCCACAATGGGTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAAACCAGCTGCTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAGAGACTTAGAAAGTTTGCAGCAGAATGTCAGGTCCAACCCAATAAGGAAAACAAGGATGGCACAACTGACAGCATATATGGTGCAAATTTTTCTTGCAAAATATCACCTTGGTTAGCTATGGGATGTCTCTCACCCCGTTCCATGTTTGATGAATTGAAAAAGTCCACTTCAAG............................................................................................AACGATTTCTGCTGCCTCTGGCAAGAAAGATGGTGGTAGTGGCACTGGGCTGAACTGGCTGATGTACGAGCTGTTATGGAGGGATTTTTTTCAG..............................................................................................................................................GTTCATCACCAAGAAATATAGTGCTGCAAAACAAAATAGTGCTACTCCAGTAACTGCTTGTGTAGGAGCTGCTGCTTAACGATGGTATATTCAAAAGGAGAATGAAGTTTTCCTTTTTGTAGCTTGATTTATTTTTCCCAGAAGTTTAGCCGTGGAATGTTAGAGTTGAACTGTCATTAGATTGAAGCATTCATCAATGGTACATTTTGTCTTTTGACAATAAGTGTTG-GATATAAAA-AATTTGTCGCCATTTCTAGCCAGTTGCTCTACAATCCTTCTTATGCTACCAATATTTAATTTTTTTCTAAATTTGATCTGTAGTTGAAAAAGGTGT-ATAACAAAAATTCCTGTAGTTGAAATATGTGTTCCATGTTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M1984" ref_strand="+" ref_description="SGN-M1984 T1407 [cos_markers]">
      <seq>tcgcttatcttcatcttcttcctctgattctgtacatttctcaccggaaaactcatcagaaatggatccaaagaatcaattttccgataactcagaagcccaaacacctcaagaagaacaacagcagacacccatcttaccgatagcttcaatttcacttgctttatccacaatccttccaacccatttccttaatcctcctaaaatctcaacccttttcaacaaaccaaacaaagtcaaaatcccgactcaagtttcatctcttacaaatctctcactttcagcttcttctcttccacctacgaattccaaattcaagtccactatttctgctaaccctcttcaaaatactctaactcttaaccctcttcgtccttctgagccttctaatgctgctgggcttcgacgagcgtcgattgtttggttccgtaacgatcttcgtgttcatgataatgagtgtcttaacgcggctcataatgagtccatgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="120472" stop="119381"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120172" g_stop="119681" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="490" r_length="490" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-M1984" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M1984" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120172" e_stop="119681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCTTATCTTCATCTTCTTCCTCTGATTCTGTACATTTTTCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGCAGACACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCT</genome_strand>
        <mrna_strand>TCGCTTATCTTCATCTTCTTCCTCTGATTCTGTACA--TTTCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGCAGACACCCATCTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCGACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACGAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAAAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>5</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="61236" PGL_stop="60635"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="61236" e_stop="60635"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="61236" e_stop="60635" e_length="602"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61236" stop="60635"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M8164" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGAAAATCATCTTCACACATTCCACAAACCTACAAAAAGGCTTTTCTACCTCTTTTGCCCACAAAAATCACTAACCAAATTCTCATTCTTGAATTTGTTACAACTTACAAGTGTTTTTGCTGATAAATTTGGTGTTTAATTCCATTGGATTGAGCAAGGGGTTTGATTCTATTCATCTTTTTTTAGATGTCGAATTCATGTATGGTTGATGGATTTTTCTCAAAACTATCAGAGGATTTGATTCTCAATATATTTTTCAAGCTAGAAGATGATCCAAGGAACTGGGCTCGTTTATCTTGTGTTTCAACGAAATTTGCATTTCTGATTCATACTATTTGTTACAAATCGAAATGCTCTGCAACTATTCCTTCGGTTGTTTCCGATCTAGTAAGTTCGACGTCTTCGTGTCCTCCAGGTGGGTGGTCTTCACTTTACAAGCTAGCTGTATGCTGTCCGGGTCTTCATCAAGCTGGTGTTCTTCTGGAGAATTCTGATTTTGGGCTTGAACGTGAAATTGGTCCGGATGAGAGTTATTCGGGTCGGGTTTTCCCTAAAGCTGAGCTGATTCCTTCTTCATCGAGTAATAATAATAATCGGTGTGA</gDNA_template>
            <first_frame> *  K  S  S  S  H  I  P  Q  T  Y  K  K  A  F  L  P  L  L  P  T  K  I  T  N  Q  I  L  I  L  E  F  V  T  T  Y  K  C  F  C  *  *  I  W  C  L  I  P  L  D  *  A  R  G  L  I  L  F  I  F  F  *  M  S  N  S  C  M  V  D  G  F  F  S  K  L  S  E  D  L  I  L  N  I  F  F  K  L  E  D  D  P  R  N  W  A  R  L  S  C  V  S  T  K  F  A  F  L  I  H  T  I  C  Y  K  S  K  C  S  A  T  I  P  S  V  V  S  D  L  V  S  S  T  S  S  C  P  P  G  G  W  S  S  L  Y  K  L  A  V  C  C  P  G  L  H  Q  A  G  V  L  L  E  N  S  D  F  G  L  E  R  E  I  G  P  D  E  S  Y  S  G  R  V  F  P  K  A  E  L  I  P  S  S  S  S  N  N  N  N  R  C   </first_frame>
            <second_frame>  E  N  H  L  H  T  F  H  K  P  T  K  R  L  F  Y  L  F  C  P  Q  K  S  L  T  K  F  S  F  L  N  L  L  Q  L  T  S  V  F  A  D  K  F  G  V  *  F  H  W  I  E  Q  G  V  *  F  Y  S  S  F  F  R  C  R  I  H  V  W  L  M  D  F  S  Q  N  Y  Q  R  I  *  F  S  I  Y  F  S  S  *  K  M  I  Q  G  T  G  L  V  Y  L  V  F  Q  R  N  L  H  F  *  F  I  L  F  V  T  N  R  N  A  L  Q  L  F  L  R  L  F  P  I  *  *  V  R  R  L  R  V  L  Q  V  G  G  L  H  F  T  S  *  L  Y  A  V  R  V  F  I  K  L  V  F  F  W  R  I  L  I  L  G  L  N  V  K  L  V  R  M  R  V  I  R  V  G  F  S  L  K  L  S  *  F  L  L  H  R  V  I  I  I  I  G  V  </second_frame>
            <third_frame>   K  I  I  F  T  H  S  T  N  L  Q  K  G  F  S  T  S  F  A  H  K  N  H  *  P  N  S  H  S  *  I  C  Y  N  L  Q  V  F  L  L  I  N  L  V  F  N  S  I  G  L  S  K  G  F  D  S  I  H  L  F  L  D  V  E  F  M  Y  G  *  W  I  F  L  K  T  I  R  G  F  D  S  Q  Y  I  F  Q  A  R  R  *  S  K  E  L  G  S  F  I  L  C  F  N  E  I  C  I  S  D  S  Y  Y  L  L  Q  I  E  M  L  C  N  Y  S  F  G  C  F  R  S  S  K  F  D  V  F  V  S  S  R  W  V  V  F  T  L  Q  A  S  C  M  L  S  G  S  S  S  S  W  C  S  S  G  E  F  *  F  W  A  *  T  *  N  W  S  G  *  E  L  F  G  S  G  F  P  *  S  *  A  D  S  F  F  I  E  *  *  *  *  S  V  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0038L16.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61050" stop="60637"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>414</number_coding_nucleotides>
                  <number_encoded_amino_acids>138</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MSNSCMVDGFFSKLSEDLILNIFFKLEDDPRNWARLSCVSTKFAFLIHTICYKSKCSATIPSVVSDLVSSTSSCPPGGWSSLYKLAVCCPGLHQAGVLLENSDFGLEREIGPDESYSGRVFPKAELIPSSSSNNNNRC</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="94950" PGL_stop="92113"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="94950" e_stop="94926"/>
            <exon e_start="93846" e_stop="93769"/>
            <exon e_start="93509" e_stop="93405"/>
            <exon e_start="93210" e_stop="93090"/>
            <exon e_start="92242" e_stop="92113"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.984" e_score="0.920"/>
          <exon-intron don_prob="0.998" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.639" acc_prob="0.999" e_score="0.981"/>
          <exon-intron don_prob="0.952" acc_prob="0.992" e_score="0.983"/>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.920">
            <gDNA_exon_boundary e_start="94950" e_stop="94926" e_length="25"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.984">
            <gDNA_intron_boundary i_start="94925" i_stop="93847" i_length="1079"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="93846" e_stop="93769" e_length="78"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.963">
            <gDNA_intron_boundary i_start="93768" i_stop="93510" i_length="259"/>
          </intron>
          <exon e_serial="3" e_score="0.981">
            <gDNA_exon_boundary e_start="93509" e_stop="93405" e_length="105"/>
          </exon>
          <intron i_serial="3" don_prob="0.639" acc_prob="0.999">
            <gDNA_intron_boundary i_start="93404" i_stop="93211" i_length="194"/>
          </intron>
          <exon e_serial="4" e_score="0.983">
            <gDNA_exon_boundary e_start="93210" e_stop="93090" e_length="121"/>
          </exon>
          <intron i_serial="4" don_prob="0.952" acc_prob="0.992">
            <gDNA_intron_boundary i_start="93089" i_stop="92243" i_length="847"/>
          </intron>
          <exon e_serial="5" e_score="0.977">
            <gDNA_exon_boundary e_start="92242" e_stop="92113" e_length="130"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94950" stop="94926"/>
              <exon start="93846" stop="93769"/>
              <exon start="93509" stop="93405"/>
              <exon start="93210" stop="93090"/>
              <exon start="92242" stop="92113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M3175" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCGACCAATGGAAGAGGATGCCCCT : CAAGGGAAAAATGAGGAAGAGGAGTTCAATACTGGGCCACTTTCTGTCCTCATGATGAGTGTTAAGAATAACACACAG : GTGCTCATCAACTGTAGGAACAACAGGAAACTTTTTGGTCGTGTGAGAGCATTTGATTGTCACTGCAATATGGTGCTTGAAAATGTTAGAGAAATGTGGACTGAG : GTGCCCAAGACTGGAAAAGGAAAAAAGAAAGCTGTTGCTGTTAACAAAGATAGGTTTATCAGCAAGATGTTCCTTCGGGGAGATTCTGTGATCATTGTCCTCCGAAATCCTAAGTAGAGAG : GTGAATTGGATTTCTGTGCTTTGGAGCAAAACTTGTAAGCAGCTAGGATTTGGACCAGCTCTGTATAACCTTTCGTATTCGGGAATTTGGCTAGGCAGAACACCACCTTTGATTGCTGTAAGACTTGATA</gDNA_template>
            <first_frame> S  T  N  G  R  G  C  P   : S  R  E  K  *  G  R  G  V  Q  Y  W  A  T  F  C  P  H  D  E  C  *  E  *  H  T   : G  A  H  Q  L  *  E  Q  Q  E  T  F  W  S  C  E  S  I  *  L  S  L  Q  Y  G  A  *  K  C  *  R  N  V  D  *   : G  A  Q  D  W  K  R  K  K  E  S  C  C  C  *  Q  R  *  V  Y  Q  Q  D  V  P  S  G  R  F  C  D  H  C  P  P  K  S  *  V  E  R :   *  I  G  F  L  C  F  G  A  K  L  V  S  S  *  D  L  D  Q  L  C  I  T  F  R  I  R  E  F  G  *  A  E  H  H  L  *  L  L  *  D  L  I </first_frame>
            <second_frame>  R  P  M  E  E  D  A  P  :  Q  G  K  N  E  E  E  E  F  N  T  G  P  L  S  V  L  M  M  S  V  K  N  N  T  Q  :  V  L  I  N  C  R  N  N  R  K  L  F  G  R  V  R  A  F  D  C  H  C  N  M  V  L  E  N  V  R  E  M  W  T  E  :  V  P  K  T  G  K  G  K  K  K  A  V  A  V  N  K  D  R  F  I  S  K  M  F  L  R  G  D  S  V  I  I  V  L  R  N  P  K  *  R   : G  E  L  D  F  C  A  L  E  Q  N  L  *  A  A  R  I  W  T  S  S  V  *  P  F  V  F  G  N  L  A  R  Q  N  T  T  F  D  C  C  K  T  *   </second_frame>
            <third_frame>   D  Q  W  K  R  M  P  L :   K  G  K  M  R  K  R  S  S  I  L  G  H  F  L  S  S  *  *  V  L  R  I  T  H  R :   C  S  S  T  V  G  T  T  G  N  F  L  V  V  *  E  H  L  I  V  T  A  I  W  C  L  K  M  L  E  K  C  G  L  R :   C  P  R  L  E  K  E  K  R  K  L  L  L  L  T  K  I  G  L  S  A  R  C  S  F  G  E  I  L  *  S  L  S  S  E  I  L  S  R  E  :  V  N  W  I  S  V  L  W  S  K  T  C  K  Q  L  G  F  G  P  A  L  Y  N  L  S  Y  S  G  I  W  L  G  R  T  P  P  L  I  A  V  R  L  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0038L16.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94949" stop="94926"/>
                    <exon start="93846" stop="93769"/>
                    <exon start="93509" stop="93405"/>
                    <exon start="93210" stop="93094"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>321</number_coding_nucleotides>
                  <number_encoded_amino_acids>107</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RPMEEDAPQGKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLFGRVRAFDCHCNMVLENVREMWTEVPKTGKGKKKAVAVNKDRFISKMFLRGDSVIIVLRNPK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="120422" PGL_stop="116851"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="120422" e_stop="119153"/>
            <exon e_start="117853" e_stop="117624"/>
            <exon e_start="117531" e_stop="117439"/>
            <exon e_start="117296" e_stop="116851"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.941" acc_prob="0.998" e_score="0.996"/>
          <exon-intron don_prob="0.881" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.977" e_score="1.000"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="120422" e_stop="119153" e_length="1270"/>
          </exon>
          <intron i_serial="1" don_prob="0.941" acc_prob="0.998">
            <gDNA_intron_boundary i_start="119152" i_stop="117854" i_length="1299"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="117853" e_stop="117624" e_length="230"/>
          </exon>
          <intron i_serial="2" don_prob="0.881" acc_prob="0.996">
            <gDNA_intron_boundary i_start="117623" i_stop="117532" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="117531" e_stop="117439" e_length="93"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.977">
            <gDNA_intron_boundary i_start="117438" i_stop="117297" i_length="142"/>
          </intron>
          <exon e_serial="4" e_score="0.987">
            <gDNA_exon_boundary e_start="117296" e_stop="116851" e_length="446"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120422" stop="119153"/>
              <exon start="117853" stop="117624"/>
              <exon start="117531" stop="117439"/>
              <exon start="117296" stop="116851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7562-2" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120220" stop="119153"/>
              <exon start="117853" stop="117624"/>
              <exon start="117531" stop="117439"/>
              <exon start="117296" stop="116936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7562-3" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120172" stop="119681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M1984" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCAAAAATAATCTCTCTATTTTAGATAGTTATTTGATTTTCTTAAATTTCATATCGATTCAAAATCAGACAAATAAATTGACTCGTACAAAAATTTATCCACTCTTAAATTGATACATCCACCTCTACCAACCTCTATAAACACCTCACCCACCTAACACAACAAATAGGCAAAAAAATAAACATAGTATTATTATATTGACACCAACTTTAACAAAACCAACAAAATTCTTTGGAGGGTATTAAGCCGTCGCTTATCTTCATCTTCTTCCTCTGATTCTGTACATTTTTCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGCAGACACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTATTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGAAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGATTCTGTTGCTGACCTTAGGAAGAATCTACAGGCAAGAGGGTCTGATCTTGTTGTTAGAATTGGGAAGCCGGAGACTGTGTTGGTGGAATTAGCTAAAGCTGTTGGAGCTGAAGCTGTGTATGCTCATAGGGAGGTTTCACATGATGAGGTTAAAGGGGAAGATAAGATTGATGCTGTAATGAAGGATGAGGGTTTGGAGGTGAAGTATTTCTGGGGTAGTACATTGTATCATGTTGATGATTTGCCTTTTAAGTTGGAGCAAATGCCTACGAATTACGGAGGCTTTAGGGAGAAAGTGCAGGGATTGGAGGTAAGGAAGACAATTGAGGCATTGGATCAATTGAGGGGATTGCCTGCTAGAGGTGATGTGGAACCTGGGGAGATTCCTTCGTTGGTTGATTTGGGGCTCAATCCTAGTGCCACCATGGGTCAG : AATGGAAAATCAGCTGCTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAAAGACTTAGAAAATTTGCAGCAGAATGTCAGGCCCAACCCAGTAAGGAAAACAAGGATGGCACAAATGACAGCATATATGGTGCAAACTTTTCTTGCAAAATATCGCCTTGGTTAGCTATGGGATGTCTCTCACCCCGTTCCATGTTTGATGAATTGAAGAAGTCCACTTCAAG : AACGATTTCTGCTGCCTCTGCCAAGAAAGATGGTGGTAGTGGCACTGGGCTGAACTGGCTGATGTACGAGCTGTTATGGAGGGATTTTTTCAG : ATTCATCACCAAGAAATATAGTGCTGCAAAACAAAATAGTGCTGCTCCAGTAACTACTTGCGTAGGAGCTGCTGCTTAACGATGGTATACTCAAAAGGAGAATGAAGGTTTCCTTTTTGTAGCTTGATTTATTTTTTCCGGAAGTTTAGCTGTGGAATGTTAGAGTTGGACTGCCATTGAATTGAAGCATTTTTTCTTTTGACAATAAGTGTTGAGACATAAAAGAATTTGTCGCCATTTCTAGCAAGTCGCTCTACAATCCTTCTTATGCTAGTATTTATATATTTTTGATTTCATCTGTAGTTGAAACAGGTGTGATAACAAACATACCTGTAGTTGAAATATGTGTTCCATGTTTGAGATTACCATCCATCTTGAACCCGCGGAGAGTATCCTTGAGCATCAGATGATTTACTATTGATACTCATTTCAATGTAAACTAGTTC</gDNA_template>
            <first_frame> I  K  N  N  L  S  I  L  D  S  Y  L  I  F  L  N  F  I  S  I  Q  N  Q  T  N  K  L  T  R  T  K  I  Y  P  L  L  N  *  Y  I  H  L  Y  Q  P  L  *  T  P  H  P  P  N  T  T  N  R  Q  K  N  K  H  S  I  I  I  L  T  P  T  L  T  K  P  T  K  F  F  G  G  Y  *  A  V  A  Y  L  H  L  L  P  L  I  L  Y  I  F  L  T  G  K  L  I  R  N  G  S  K  E  S  I  F  R  *  L  R  S  P  N  T  S  R  R  T  T  A  D  T  H  F  T  D  S  F  N  F  T  C  F  I  H  N  P  S  N  P  F  P  *  S  S  *  N  L  N  P  F  Q  Q  T  K  Q  S  Q  N  P  N  S  S  F  I  S  Y  K  S  L  T  F  S  F  F  S  S  T  Y  K  F  Q  I  Q  V  H  Y  F  C  *  P  S  S  E  Y  S  N  S  *  P  S  S  S  F  *  A  F  *  C  C  W  A  S  T  S  V  D  C  L  V  P  *  R  S  S  C  S  *  *  *  V  S  *  R  G  S  *  *  V  H  V  C  I  G  C  L  L  F  *  P  E  R  L  W  K  I  L  I  W  V  *  *  N  W  A  V  *  G  *  F  F  D  *  F  C  C  *  P  *  E  E  S  T  G  K  R  V  *  S  C  C  *  N  W  E  A  G  D  C  V  G  G  I  S  *  S  C  W  S  *  S  C  V  C  S  *  G  G  F  T  *  *  G  *  R  G  R  *  D  *  C  C  N  E  G  *  G  F  G  G  E  V  F  L  G  *  Y  I  V  S  C  *  *  F  A  F  *  V  G  A  N  A  Y  E  L  R  R  L  *  G  E  S  A  G  I  G  G  K  E  D  N  *  G  I  G  S  I  E  G  I  A  C  *  R  *  C  G  T  W  G  D  S  F  V  G  *  F  G  A  Q  S  *  C  H  H  G  S   : E  W  K  I  S  C  *  C  F  P  C  G  R  R  E  *  S  T  A  K  T  *  K  I  C  S  R  M  S  G  P  T  Q  *  G  K  Q  G  W  H  K  *  Q  H  I  W  C  K  L  F  L  Q  N  I  A  L  V  S  Y  G  M  S  L  T  P  F  H  V  *  *  I  E  E  V  H  F  K  :  N  D  F  C  C  L  C  Q  E  R  W  W  *  W  H  W  A  E  L  A  D  V  R  A  V  M  E  G  F  F  Q  :  I  H  H  Q  E  I  *  C  C  K  T  K  *  C  C  S  S  N  Y  L  R  R  S  C  C  L  T  M  V  Y  S  K  G  E  *  R  F  P  F  C  S  L  I  Y  F  F  R  K  F  S  C  G  M  L  E  L  D  C  H  *  I  E  A  F  F  L  L  T  I  S  V  E  T  *  K  N  L  S  P  F  L  A  S  R  S  T  I  L  L  M  L  V  F  I  Y  F  *  F  H  L  *  L  K  Q  V  *  *  Q  T  Y  L  *  L  K  Y  V  F  H  V  *  D  Y  H  P  S  *  T  R  G  E  Y  P  *  A  S  D  D  L  L  L  I  L  I  S  M  *  T  S   </first_frame>
            <second_frame>  S  K  I  I  S  L  F  *  I  V  I  *  F  S  *  I  S  Y  R  F  K  I  R  Q  I  N  *  L  V  Q  K  F  I  H  S  *  I  D  T  S  T  S  T  N  L  Y  K  H  L  T  H  L  T  Q  Q  I  G  K  K  I  N  I  V  L  L  Y  *  H  Q  L  *  Q  N  Q  Q  N  S  L  E  G  I  K  P  S  L  I  F  I  F  F  L  *  F  C  T  F  F  S  P  E  N  S  S  E  M  D  P  K  N  Q  F  S  D  N  S  E  A  Q  T  P  Q  E  E  Q  Q  Q  T  P  I  L  P  I  A  S  I  S  L  A  L  S  T  I  L  P  T  H  F  L  N  P  P  K  I  S  T  L  F  N  K  P  N  K  V  K  I  P  T  Q  V  S  S  L  T  N  L  S  L  S  A  S  S  L  P  P  T  N  S  K  F  K  S  T  I  S  A  N  P  L  Q  N  T  L  T  L  N  P  L  R  P  S  E  P  S  N  A  A  G  L  R  R  A  S  I  V  W  F  R  N  D  L  R  V  H  D  N  E  C  L  N  A  A  H  N  E  S  M  S  V  L  A  V  Y  C  F  D  P  R  D  Y  G  K  S  S  S  G  F  D  K  T  G  P  Y  R  A  S  F  L  I  D  S  V  A  D  L  R  K  N  L  Q  A  R  G  S  D  L  V  V  R  I  G  K  P  E  T  V  L  V  E  L  A  K  A  V  G  A  E  A  V  Y  A  H  R  E  V  S  H  D  E  V  K  G  E  D  K  I  D  A  V  M  K  D  E  G  L  E  V  K  Y  F  W  G  S  T  L  Y  H  V  D  D  L  P  F  K  L  E  Q  M  P  T  N  Y  G  G  F  R  E  K  V  Q  G  L  E  V  R  K  T  I  E  A  L  D  Q  L  R  G  L  P  A  R  G  D  V  E  P  G  E  I  P  S  L  V  D  L  G  L  N  P  S  A  T  M  G  Q  :  N  G  K  S  A  A  N  A  S  L  V  G  G  E  N  E  A  L  Q  R  L  R  K  F  A  A  E  C  Q  A  Q  P  S  K  E  N  K  D  G  T  N  D  S  I  Y  G  A  N  F  S  C  K  I  S  P  W  L  A  M  G  C  L  S  P  R  S  M  F  D  E  L  K  K  S  T  S  R :   T  I  S  A  A  S  A  K  K  D  G  G  S  G  T  G  L  N  W  L  M  Y  E  L  L  W  R  D  F  F  R :   F  I  T  K  K  Y  S  A  A  K  Q  N  S  A  A  P  V  T  T  C  V  G  A  A  A  *  R  W  Y  T  Q  K  E  N  E  G  F  L  F  V  A  *  F  I  F  S  G  S  L  A  V  E  C  *  S  W  T  A  I  E  L  K  H  F  F  F  *  Q  *  V  L  R  H  K  R  I  C  R  H  F  *  Q  V  A  L  Q  S  F  L  C  *  Y  L  Y  I  F  D  F  I  C  S  *  N  R  C  D  N  K  H  T  C  S  *  N  M  C  S  M  F  E  I  T  I  H  L  E  P  A  E  S  I  L  E  H  Q  M  I  Y  Y  *  Y  S  F  Q  C  K  L  V  </second_frame>
            <third_frame>   Q  K  *  S  L  Y  F  R  *  L  F  D  F  L  K  F  H  I  D  S  K  S  D  K  *  I  D  S  Y  K  N  L  S  T  L  K  L  I  H  P  P  L  P  T  S  I  N  T  S  P  T  *  H  N  K  *  A  K  K  *  T  *  Y  Y  Y  I  D  T  N  F  N  K  T  N  K  I  L  W  R  V  L  S  R  R  L  S  S  S  S  S  S  D  S  V  H  F  S  H  R  K  T  H  Q  K  W  I  Q  R  I  N  F  P  I  T  Q  K  P  K  H  L  K  K  N  N  S  R  H  P  F  Y  R  *  L  Q  F  H  L  L  Y  P  Q  S  F  Q  P  I  S  L  I  L  L  K  S  Q  P  F  S  T  N  Q  T  K  S  K  S  Q  L  K  F  H  L  L  Q  I  S  H  F  Q  L  L  L  F  H  L  Q  I  P  N  S  S  P  L  F  L  L  T  L  F  R  I  L  *  L  L  T  L  F  V  L  L  S  L  L  M  L  L  G  F  D  E  R  R  L  F  G  S  V  T  I  F  V  F  M  I  M  S  V  L  T  R  L  I  M  S  P  C  L  Y  W  L  F  T  V  L  T  R  E  I  M  E  N  P  H  L  G  L  I  K  L  G  R  I  G  L  V  F  *  L  I  L  L  L  T  L  G  R  I  Y  R  Q  E  G  L  I  L  L  L  E  L  G  S  R  R  L  C  W  W  N  *  L  K  L  L  E  L  K  L  C  M  L  I  G  R  F  H  M  M  R  L  K  G  K  I  R  L  M  L  *  *  R  M  R  V  W  R  *  S  I  S  G  V  V  H  C  I  M  L  M  I  C  L  L  S  W  S  K  C  L  R  I  T  E  A  L  G  R  K  C  R  D  W  R  *  G  R  Q  L  R  H  W  I  N  *  G  D  C  L  L  E  V  M  W  N  L  G  R  F  L  R  W  L  I  W  G  S  I  L  V  P  P  W  V  R :   M  E  N  Q  L  L  M  L  P  L  W  E  E  R  M  K  H  C  K  D  L  E  N  L  Q  Q  N  V  R  P  N  P  V  R  K  T  R  M  A  Q  M  T  A  Y  M  V  Q  T  F  L  A  K  Y  R  L  G  *  L  W  D  V  S  H  P  V  P  C  L  M  N  *  R  S  P  L  Q   : E  R  F  L  L  P  L  P  R  K  M  V  V  V  A  L  G  *  T  G  *  C  T  S  C  Y  G  G  I  F  S   : D  S  S  P  R  N  I  V  L  Q  N  K  I  V  L  L  Q  *  L  L  A  *  E  L  L  L  N  D  G  I  L  K  R  R  M  K  V  S  F  L  *  L  D  L  F  F  P  E  V  *  L  W  N  V  R  V  G  L  P  L  N  *  S  I  F  S  F  D  N  K  C  *  D  I  K  E  F  V  A  I  S  S  K  S  L  Y  N  P  S  Y  A  S  I  Y  I  F  L  I  S  S  V  V  E  T  G  V  I  T  N  I  P  V  V  E  I  C  V  P  C  L  R  L  P  S  I  L  N  P  R  R  V  S  L  S  I  R  *  F  T  I  D  T  H  F  N  V  N  *  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0038L16.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120145" stop="119153"/>
                    <exon start="117853" stop="117624"/>
                    <exon start="117531" stop="117439"/>
                    <exon start="117296" stop="117218"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1392</number_coding_nucleotides>
                  <number_encoded_amino_acids>464</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FCTFFSPENSSEMDPKNQFSDNSEAQTPQEEQQQTPILPIASISLALSTILPTHFLNPPKISTLFNKPNKVKIPTQVSSLTNLSLSASSLPPTNSKFKSTISANPLQNTLTLNPLRPSEPSNAAGLRRASIVWFRNDLRVHDNECLNAAHNESMSVLAVYCFDPRDYGKSSSGFDKTGPYRASFLIDSVADLRKNLQARGSDLVVRIGKPETVLVELAKAVGAEAVYAHREVSHDEVKGEDKIDAVMKDEGLEVKYFWGSTLYHVDDLPFKLEQMPTNYGGFREKVQGLEVRKTIEALDQLRGLPARGDVEPGEIPSLVDLGLNPSATMGQNGKSAANASLVGGENEALQRLRKFAAECQAQPSKENKDGTNDSIYGANFSCKISPWLAMGCLSPRSMFDELKKSTSRTISAASAKKDGGSGTGLNWLMYELLWRDFFRFITKKYSAAKQNSAAPVTTCVGAAA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0038L16.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="117081" stop="116887"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DIKEFVAISSKSLYNPSYASIYIFLISSVVETGVITNIPVVEICVPCLRLPSILNPRRVSLSIR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 47 chains have been computed
$ 
$ memory statistics:
$ 9896 bytes spliced alignments in total
$ 5 spliced alignments have been stored
$ 1979 bytes was the average size of a spliced alignment
$ 8104 bytes predicted gene locations in total
$ 3 predicted gene locations have been stored
$ 2701 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 47 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 13:16:06
-->
