<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 13:11:29"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E543494" ref_strand="+" ref_description="SGN-E543494 [TUS-65-F11]">
      <seq>ctctgattttttttttcaaattaattaatttgtgatcatcacaattgtcatgtgtaagtgattccgccattaaaggatacagatatagtcagtgtttccgccattaaagtagataaacagtgaggaaaaacaaacggagatttttcagtattttttttttcactattaagtgctcgcagtttgtttgtttgttttttgggaaaattctcagatttggaacaattttttgaattttggaaatgaagttttgtaagaaatatgaggagtatatggaagggcaatgccggaataagaagttgccgcgggtaggtttgaagaaattgaagaaaattttgaagagatgtcgaaaatgtcatcaatcacgaagtgttgttggtctgtctggagataacaatattgttcatgatagctccagttgctcgcagcatcaatgctctgtttgtgatggaagtttttttccatctctccttaaggagatgtctgaagtggttggcagcttcaataaacgtgcgcagaaattgcttgaactgcatctctcatcaggtttccgcaaatatcttatcttgctcaaagaaaaaattcaaggaaaccatattgctttagttcaagaaggaaaagatctagtcacctatgctataatcaacgcaattgccgtgcgtaaaatacttaagaaatatgacaagattcactattctaagcaaggccaggcattcaagtcacaagctcaaagtatgcacattgagatccttcagtccccctggctgtgtgaacttatgggctttcacatcaatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="3276" stop="878"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2976" g_stop="2538" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="438" r_length="438" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2537" i_stop="1613" i_length="925">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.511" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1612" g_stop="1368" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="683" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1367" i_stop="1289" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1288" g_stop="1178" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="684" r_stop="794" r_length="111" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E543494" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>795</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543494" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2976" e_stop="2538"/>
          <exon e_start="1612" e_stop="1368"/>
          <exon e_start="1288" e_stop="1178"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTGATTTTTTTTTTTCAAATTAATTAATTTGTGATCATCACAATTGTCATGTGTAAGTGATTCCGCCATTAAAGGATACAGATATAGTCAGTGTTTCCGCCATTAAAGTAGATAAACAGTGAGGAAAAACAAACGGAGATTTTTCAGTATTTTTTTTTTCACTATTAAGTGCTCGCAGTTTGTTTGTTTGTTTTTTGGGAAAATTCTCAGATTTGGAACAATTTTTTGAATTTTGGAAATGAAGTTTTGTAAGAAATATGAGGAGTATATGGAAGGGCAATGCCGGAATAAGAAGTTGCCGCGGGTAGGTTTGAAGAAATTGAAGAAAATTTTGAAGAGATGTCGAAAATGTCATCAATCACGAAGTGTTGTTGGTCTGTCTGGAGATAACAATATTGTTCATGATAGCTCCAGTTGCTCGCAGCATCAATGCTCTGGTTTGTTTGATCTGTTGAATTATACTGTGATTGATTAAATTTATGTTGAATTATACTGTGATTGATTAAATTTATGTTGAATTATACTGTGATTGATTAAATTGATGTAAACCTGTGCTTGATTTTGGATGATTTTGTATAGAGTAGTTGAATTTTGTTAAGAATCACGAGTTTTTAGGTCTAAATCACAGTAGAGTAGCTGATTTCGCCATAGTTTTAATGGACAGAGTTATCTAGTATATCTAGTGGGAGGTGGCAACTATCGTGTGAATTAGTCTGGCAAAGTGGTTAAATTTGGTTAAGAATTATTAGGTATCGTGTTCAAATTTAAGCATAGACGAAAACATAGAGTTAATTGCTATTTGTGGTGGGTGAGGTGGAAGGTATTCTATGGAATTAGTGGAAAAAAGAAAAAAGAATAGCTTGAATTTGGTGTAAAAAGAAAAAAGTAAATTAGTTTGCCCCTTTTTGAGTTTTTTGACAATTCATGCACTAAGACAACTTTAATACTGGTAAGTGCATAAATTTTTTGTTTGCTTGTACATGTTTATCTGTTGAGATAAAATTGATTCATTTCTGATGACTACGTTTGTTGTTTTAGTTTTATCTATTGTTGCTTATTCAAATGATTTTGTATAGGGTAGCTTAAAGTTGGCAATCCAGAAAAAGGGGTAAATGAATTTGCTACCTTTTGTGTTTTTTATAATAGTTGCACTAGAACGATACTCGGATTAACTTCATACAGGGTAGCTTGATTTTGGTGAAAAAGAAGCAAAGATATTCCCAAGCTTCTGAAGTTTTTTTACAATTTATGCACCAGAACAATGTTAAAGCTTGTAAAATCTGAAACTGTCTTTATATTTGTTAATATATTTCATATCAGTCATCACTTAAAGCTTCTAATAAATTTTCCTGCCTTATGTAGTTTGTGATGGAAGTTTTTTTCCATCTCTCCTTAAGGAGATGTCTGAAGTGGTTGGCAGCTTCAATAAACGTGCGCAGAAATTGCTTGAACTGCATCTCTCATCAGGTTTCCGCAAATATCTTATCTTGCTCAAAGAAAAAATTCAAGGAAACCATATTGCTTTAGTTCAAGAAGGAAAAGATCTAGTCACCTATGCTATAATCAACGCAATTGCCGTGCGTAAAATACTTAAGAAATATGACAAGGTATTTCCCTTTTGGATTATTAATTCAACATATTAACTTAGTTTTGCTTCATTTATTAACTACTCCTGTCTATCTGTAGATTCACTATTCTAAGCAAGGCCAGGCATTCAAGTCACAAGCTCAAAGTATGCACATTGAGATCCTTCAGTCCCCCTGGCTGTGTGAACTTATGGCTTTTCACATCAATTTG</genome_strand>
        <mrna_strand>CTCTGA-TTTTTTTTTTCAAATTAATTAATTTGTGATCATCACAATTGTCATGTGTAAGTGATTCCGCCATTAAAGGATACAGATATAGTCAGTGTTTCCGCCATTAAAGTAGATAAACAGTGAGGAAAAACAAACGGAGATTTTTCAGTATTTTTTTTTTCACTATTAAGTGCTCGCAGTTTGTTTGTTTGTTTTTTGGGAAAATTCTCAGATTTGGAACAATTTTTTGAATTTTGGAAATGAAGTTTTGTAAGAAATATGAGGAGTATATGGAAGGGCAATGCCGGAATAAGAAGTTGCCGCGGGTAGGTTTGAAGAAATTGAAGAAAATTTTGAAGAGATGTCGAAAATGTCATCAATCACGAAGTGTTGTTGGTCTGTCTGGAGATAACAATATTGTTCATGATAGCTCCAGTTGCTCGCAGCATCAATGCTCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGATGGAAGTTTTTTTCCATCTCTCCTTAAGGAGATGTCTGAAGTGGTTGGCAGCTTCAATAAACGTGCGCAGAAATTGCTTGAACTGCATCTCTCATCAGGTTTCCGCAAATATCTTATCTTGCTCAAAGAAAAAATTCAAGGAAACCATATTGCTTTAGTTCAAGAAGGAAAAGATCTAGTCACCTATGCTATAATCAACGCAATTGCCGTGCGTAAAATACTTAAGAAATATGACAAG...............................................................................ATTCACTATTCTAAGCAAGGCCAGGCATTCAAGTCACAAGCTCAAAGTATGCACATTGAGATCCTTCAGTCCCCCTGGCTGTGTGAACTTATGGGCTTTCACATCAATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E304930" ref_strand="+" ref_description="SGN-E304930 [cLEX-10-D21]">
      <seq>ttgattttttttttcaaataattaatttgtgatcatcacaatgcatgtgtaagtgattccgcattaaaggatacaattagcaggtttccgcattaaagtagataacagtgaggaaaaacaaacggagatttttcagtattttttttttcactattaagtgctcgcagtttgtttgtttgttttttgggaaaattctcagatttggaacaattttttgaattttggaaatgaagttttgtaagaaatatgaggagtatatggaagggcaatgccggaataagaagttgccgcgggtaggtttgaagaaattgaagaaaattttgaagagatgtcgaaaatgtcatcaatcacgaagtgttgttggtctgtctggagataacaatattgttcatgatagctccagttgctcgcagcatcaatgctctgtttgtgatggaagtttttttccatctctccttaaggagatgtctgaagtggttggcagcttcaataaacgtgcgcagaaattgcttgaactgcatctctcatcaggtttccgcaaatatcttatcttgctcaaagaaaaaattca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="3273" stop="1168"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2974" g_stop="2538" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="426" r_length="426" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2537" i_stop="1613" i_length="925">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.511" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1612" g_stop="1468" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="571" r_length="145" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E304930" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.019" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304930" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2974" e_stop="2538"/>
          <exon e_start="1612" e_stop="1468"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATTTTTTTTTTTCAAATTAATTAATTTGTGATCATCACAATTGTCATGTGTAAGTGATTCCGCCATTAAAGGATACAGATATAGTCAGTGTTTCCGCCATTAAAGTAGATAAACAGTGAGGAAAAACAAACGGAGATTTTTCAGTATTTTTTTTTTCACTATTAAGTGCTCGCAGTTTGTTTGTTTGTTTTTTGGGAAAATTCTCAGATTTGGAACAATTTTTTGAATTTTGGAAATGAAGTTTTGTAAGAAATATGAGGAGTATATGGAAGGGCAATGCCGGAATAAGAAGTTGCCGCGGGTAGGTTTGAAGAAATTGAAGAAAATTTTGAAGAGATGTCGAAAATGTCATCAATCACGAAGTGTTGTTGGTCTGTCTGGAGATAACAATATTGTTCATGATAGCTCCAGTTGCTCGCAGCATCAATGCTCTGGTTTGTTTGATCTGTTGAATTATACTGTGATTGATTAAATTTATGTTGAATTATACTGTGATTGATTAAATTTATGTTGAATTATACTGTGATTGATTAAATTGATGTAAACCTGTGCTTGATTTTGGATGATTTTGTATAGAGTAGTTGAATTTTGTTAAGAATCACGAGTTTTTAGGTCTAAATCACAGTAGAGTAGCTGATTTCGCCATAGTTTTAATGGACAGAGTTATCTAGTATATCTAGTGGGAGGTGGCAACTATCGTGTGAATTAGTCTGGCAAAGTGGTTAAATTTGGTTAAGAATTATTAGGTATCGTGTTCAAATTTAAGCATAGACGAAAACATAGAGTTAATTGCTATTTGTGGTGGGTGAGGTGGAAGGTATTCTATGGAATTAGTGGAAAAAAGAAAAAAGAATAGCTTGAATTTGGTGTAAAAAGAAAAAAGTAAATTAGTTTGCCCCTTTTTGAGTTTTTTGACAATTCATGCACTAAGACAACTTTAATACTGGTAAGTGCATAAATTTTTTGTTTGCTTGTACATGTTTATCTGTTGAGATAAAATTGATTCATTTCTGATGACTACGTTTGTTGTTTTAGTTTTATCTATTGTTGCTTATTCAAATGATTTTGTATAGGGTAGCTTAAAGTTGGCAATCCAGAAAAAGGGGTAAATGAATTTGCTACCTTTTGTGTTTTTTATAATAGTTGCACTAGAACGATACTCGGATTAACTTCATACAGGGTAGCTTGATTTTGGTGAAAAAGAAGCAAAGATATTCCCAAGCTTCTGAAGTTTTTTTACAATTTATGCACCAGAACAATGTTAAAGCTTGTAAAATCTGAAACTGTCTTTATATTTGTTAATATATTTCATATCAGTCATCACTTAAAGCTTCTAATAAATTTTCCTGCCTTATGTAGTTTGTGATGGAAGTTTTTTTCCATCTCTCCTTAAGGAGATGTCTGAAGTGGTTGGCAGCTTCAATAAACGTGCGCAGAAATTGCTTGAACTGCATCTCTCATCAGGTTTCCGCAAATATCTTATCTTGCTCAAAGAAAAAATTCA</genome_strand>
        <mrna_strand>TTGA-TTTTTTTTTTCAAA-TAATTAATTTGTGATCATCACAA-TG-CATGTGTAAGTGATTCCG-CATTAAAGGATACA-AT-TAG-CAG-GTTTCCG-CATTAAAGTAGAT-AACAGTGAGGAAAAACAAACGGAGATTTTTCAGTATTTTTTTTTTCACTATTAAGTGCTCGCAGTTTGTTTGTTTGTTTTTTGGGAAAATTCTCAGATTTGGAACAATTTTTTGAATTTTGGAAATGAAGTTTTGTAAGAAATATGAGGAGTATATGGAAGGGCAATGCCGGAATAAGAAGTTGCCGCGGGTAGGTTTGAAGAAATTGAAGAAAATTTTGAAGAGATGTCGAAAATGTCATCAATCACGAAGTGTTGTTGGTCTGTCTGGAGATAACAATATTGTTCATGATAGCTCCAGTTGCTCGCAGCATCAATGCTCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGATGGAAGTTTTTTTCCATCTCTCCTTAAGGAGATGTCTGAAGTGGTTGGCAGCTTCAATAAACGTGCGCAGAAATTGCTTGAACTGCATCTCTCATCAGGTTTCCGCAAATATCTTATCTTGCTCAAAGAAAAAATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E301383" ref_strand="+" ref_description="SGN-E301383 [cLEW-24-F10]">
      <seq>agagaactagtctctgatttttttttttcaaattaattaatttgtgatcatcacaattgtcatgtgtaagtgattccgccattaaaggatacagatatagtcagtgtttccgccattaaagtagataaacagtgaggaaaaacaaacggagatttttcagtattttttttttcactattaagtgctcgcagtttgtttgtttgttttttgggaaaattctcagatttggaacaattttttgaattttggaaatgaagttttgtaagaaatatgaggagtatatggaagggcaatgccggaataagaagttgccgcgggtaggtttgaagaaattgaagaaaattttgaagagatgtcgaaaatgtcatcaatcaccaagtgttgttggtctgtctggagataacaatattgttcatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="3277" stop="2270"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2985" g_stop="2570" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="418" r_length="418" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E301383" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301383" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2985" e_stop="2570"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTGAA-T-TTCTCTGATTTTTTTTTTTCAAATTAATTAATTTGTGATCATCACAATTGTCATGTGTAAGTGATTCCGCCATTAAAGGATACAGATATAGTCAGTGTTTCCGCCATTAAAGTAGATAAACAGTGAGGAAAAACAAACGGAGATTTTTCAGTATTTTTTTTTTCACTATTAAGTGCTCGCAGTTTGTTTGTTTGTTTTTTGGGAAAATTCTCAGATTTGGAACAATTTTTTGAATTTTGGAAATGAAGTTTTGTAAGAAATATGAGGAGTATATGGAAGGGCAATGCCGGAATAAGAAGTTGCCGCGGGTAGGTTTGAAGAAATTGAAGAAAATTTTGAAGAGATGTCGAAAATGTCATCAATCACGAAGTGTTGTTGGTCTGTCTGGAGATAACAATATTGTTCATGA</genome_strand>
        <mrna_strand>AGAGAACTAGTCTCTGATTTTTTTTTTTCAAATTAATTAATTTGTGATCATCACAATTGTCATGTGTAAGTGATTCCGCCATTAAAGGATACAGATATAGTCAGTGTTTCCGCCATTAAAGTAGATAAACAGTGAGGAAAAACAAACGGAGATTTTTCAGTATTTTTTTTTTCACTATTAAGTGCTCGCAGTTTGTTTGTTTGTTTTTTGGGAAAATTCTCAGATTTGGAACAATTTTTTGAATTTTGGAAATGAAGTTTTGTAAGAAATATGAGGAGTATATGGAAGGGCAATGCCGGAATAAGAAGTTGCCGCGGGTAGGTTTGAAGAAATTGAAGAAAATTTTGAAGAGATGTCGAAAATGTCATCAATCACCAAGTGTTGTTGGTCTGTCTGGAGATAACAATATTGTTCATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E367110" ref_strand="+" ref_description="SGN-E367110 [cLPT-5-O20]">
      <seq>tcatccacaatacacacgcaaccaccacccacacgcacaagcaacccgaaccaccccatacccacaacatctccaacccgatccgttttgggtccttaccggccacccccgaatcaccaccgcccgtgccaccccccaatactcatcccatgttaacccgtggcaaagccggtatctttaaacccaaaacctttcaggctaccatactaccaaatacaccccttcccgatagtgaaccaacaacctactctgttgcctcaaaaaatgcttattggcgtcatgctatggatgacgagtttaaggctttgactgatcaggaaacttgggttcttgtacctaagccccatgggcggcacccagtgggctgtaaatgggtgtacaaaattaaacacaatgcggatggcagtatttccaggtacaaggctcgtttggttgctaaaggctacaatcaggagtatggtcttgattactccgagacattcagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="+" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="39445" stop="40529"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39745" g_stop="40229" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="486" r_length="486" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="+" ref_id="SGN-E367110" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367110" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39745" e_stop="40229"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACCCACAATACACCCGCAACCACCACCCACACTAACAACCAACCCGAACCACCCCCATACCCACAACATCTCCAGCCCGATCCGTTTTGGGTCCTTCCCGGCCA--CCCGAATAACCACCGCCCGTGCCACCCCCCAATACTCATCCCATGTTAACCCGTGTCAAAGCCGGTATCTTTAAATCCAAAACCTTTCAGGCTACCATACTACCAAATACACCCCTTCCCGATAGTGAACCAACAACCTACTCTGTTGCCTCAAAAAATGCTTATTGGCGTCATGCTATGGATGACGAGTTTAAGGCTTTTACTGATTAGAAAACTTGGGTTCTTGTACCTAAGCCCCATGGGCGGCACCCAGTGGGCTGTAAATGGGTCTACAAAATTAAACACAATGCAAATGGCAGTATTTCCAGGTACAAGGCTCGTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGGCTTGATTACTCTGAGACATTCAGTC</genome_strand>
        <mrna_strand>TCATCCACAATACACACGCAACCACCACCCACACGCACAAGCAACCCGAACCA-CCCCATACCCACAACATCTCCAACCCGATCCGTTTTGGGTCCTTACCGGCCACCCCCGAATCACCACCGCCCGTGCCACCCCCCAATACTCATCCCATGTTAACCCGTGGCAAAGCCGGTATCTTTAAACCCAAAACCTTTCAGGCTACCATACTACCAAATACACCCCTTCCCGATAGTGAACCAACAACCTACTCTGTTGCCTCAAAAAATGCTTATTGGCGTCATGCTATGGATGACGAGTTTAAGGCTTTGACTGATCAGGAAACTTGGGTTCTTGTACCTAAGCCCCATGGGCGGCACCCAGTGGGCTGTAAATGGGTGTACAAAATTAAACACAATGCGGATGGCAGTATTTCCAGGTACAAGGCTCGTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGTCTTGATTACTCCGAGACATTCAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E245978" ref_strand="+" ref_description="SGN-E245978 [cLEF-51-O12]">
      <seq>gtttggttgctaaaggctacaatcaggagtatgggcttgattactccgagacattcagtcctgttattcggcaggaaaccattcgcctggtactgtcactcgccgtgcgcaacaattggctcatcaatcagttggatgtttccaatgcttttcttcatggcatgcttgatgaaacaatctacatgacgcaaccaccgggctatgttgatcctcgcttccctcaacatgtttgcaaactccagaagtctctgtatgggctcaagcaagccccccgtgcttggtacgcacgtctgaaaacgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="+" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="39870" stop="40770"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40170" g_stop="40470" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="+" ref_id="SGN-E245978" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>301</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245978" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40170" e_stop="40470"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGGCTTGATTACTCTGAGACATTCAGTCCTGTTATTCGGCAGGAAACCATTCGCCTGGTACTGTCACTCGTTGTGCGCAACAATTGGCTCATCAATCAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGCTTGATGAAACTATCTACATGACGCAACCACCGGGCTATGTTGATCCCCGCTTCCCTAAACATGTTTGTAAACTCCAGAAGTCTCTGTATGGGCTCAAGCAAGCCCCCCGTGCTTGGTACACACGTCTTAAAATGTT</genome_strand>
        <mrna_strand>GTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGGCTTGATTACTCCGAGACATTCAGTCCTGTTATTCGGCAGGAAACCATTCGCCTGGTACTGTCACTCGCCGTGCGCAACAATTGGCTCATCAATCAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGCTTGATGAAACAATCTACATGACGCAACCACCGGGCTATGTTGATCCTCGCTTCCCTCAACATGTTTGCAAACTCCAGAAGTCTCTGTATGGGCTCAAGCAAGCCCCCCGTGCTTGGTACGCACGTCTGAAAACGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355237" ref_strand="+" ref_description="SGN-E355237 [cTOS-18-E22]">
      <seq>gatttgaatccataaagaaatgatccaattaatcccgatacaaaatgagaatcgtatggatgcgattttgcacttctcaacaaatataatctagtttggtgttctaagcgggtattcaattttgggtaaggaaaaacttgtcattcttacttaactcttggtttaggaattccttatataacttaaatgacacagcaaaagcgataaaatacaacctcaaaatcacacatagactactcgtaaataataattttaagaaacatagtagaacatgaattgttgtatattgctattttcttcatgtaggaggacacaatattccaataaaataatgaaatcgtaagaaagtacatcaacatatttaaaaaggaaatatataatacttaggaaggaaagaaagaagcggataaaaagaaaaagaaaattactgcacatacaaaatgatcagcaaagttcattcatttttgcatgataatctctcatcgagtcttgtcatttccatgaagatcatgctaggcaatttatagaaatagcaatttatagaaatgctaggcaattaataatgattttagtccatatcaaatttgtataatgaaaaaacttttcaaatacttatacaatagagtaattaatttataaagtaaacttgattcatgcaccaatctaaatgagttatttattaaatatttaattatattttataatatttggttaatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="+" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="44887" stop="46204"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45187" g_stop="45904" g_length="718"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="718" r_length="718" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="+" ref_id="SGN-E355237" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355237" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45187" e_stop="45904"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTGAATCCATAAAGAAATGATCCAATTAATCCCGATACAAAATGAGAATCGTATGGATGCGATTTTGCATTTCTCGACAAATAAAATGTAGTTTGGTGTTTTAAGCGGGTAATCAATTTTGGGTAAGGAAAAACGTGTCATTCTTACTTAACTCTTGGTTTAGGAATTCCTTATATAACTTAAATGACACAGCAAAAGCGATAAAATACAACCTCAAAATCACACATAGACTACTCGTAAATAATAATTTTAAGAAACATAGTAGAACATGAATTGTTGTATATTGCTATTTTCTTCATGTAGGAGGACACAATATTCCAATAAAATAATGAAATCGTAAGAAAGTACATCAACATATTTAAAAAGGAAATATATAATACTTAGGAAGGAAAGAAAGAAGCGGATAAAAAGAAAAAGAAAATTACTGCACATACAAAATGATCAGCAAAGTTCATTCATTTTTGCATGATAATCTCTCATCGAGTCTTGTCATTTCCATGAAGATCATGCTAGGCAATTTATAGAAATAGCAATTTATAGAAATGCTAGGCAATTAATAATGATTTTAGTCCATATCAAATTTGTATAATGAAAAAACTTTTCAAATACTTATACAATAGAGTAATTAATTAATAAAGTAAACTTGATTCATGCACCAATCTAAATGAGTTATTTATTAAATATTTAATTATATTTTATAATATTTGTTTAATTA</genome_strand>
        <mrna_strand>GATTTGAATCCATAAAGAAATGATCCAATTAATCCCGATACAAAATGAGAATCGTATGGATGCGATTTTGCACTTCTCAACAAATATAATCTAGTTTGGTGTTCTAAGCGGGTATTCAATTTTGGGTAAGGAAAAACTTGTCATTCTTACTTAACTCTTGGTTTAGGAATTCCTTATATAACTTAAATGACACAGCAAAAGCGATAAAATACAACCTCAAAATCACACATAGACTACTCGTAAATAATAATTTTAAGAAACATAGTAGAACATGAATTGTTGTATATTGCTATTTTCTTCATGTAGGAGGACACAATATTCCAATAAAATAATGAAATCGTAAGAAAGTACATCAACATATTTAAAAAGGAAATATATAATACTTAGGAAGGAAAGAAAGAAGCGGATAAAAAGAAAAAGAAAATTACTGCACATACAAAATGATCAGCAAAGTTCATTCATTTTTGCATGATAATCTCTCATCGAGTCTTGTCATTTCCATGAAGATCATGCTAGGCAATTTATAGAAATAGCAATTTATAGAAATGCTAGGCAATTAATAATGATTTTAGTCCATATCAAATTTGTATAATGAAAAAACTTTTCAAATACTTATACAATAGAGTAATTAATTTATAAAGTAAACTTGATTCATGCACCAATCTAAATGAGTTATTTATTAAATATTTAATTATATTTTATAATATTTGGTTAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E349120" ref_strand="+" ref_description="SGN-E349120 [cTOS-2-P11]">
      <seq>gatttgaatccataaagaaatgatccaattaatcccgatacaaaatgagaatcgtatggatgcgattttgcacttctcaacaaatataatctagtttggtgttctaagcgggtattcaattttgggtaaggaaaaacttgtcattcttacttaactcttggtttaggaattccttatataacttaaatgacacagcaaaagcgataaaatacaacctcaaaatcacacatagactactcgtaaataataattttaagaaacatagtagaacatgaattgttgtatattgctattttcttcatgtaggaggacacaatattccaataaaataatgaaatcgtaagaaagtacatcaacatatttaaaaaggaaatatataatacttaggaaggaaagaaagaagcggataaaaagaaaaagaaaattactgcacatacaaaatgatcagcaaagttcattcatttttgcatgataatctctcatcgagtcttgtcatttccatgaagatcatgctaggcaatttatagaaatagcaatttatagaaatgctaggcaattaataatgattttagtccatatcaaatttgtataatgaaaaaacttttcaaatacttatacaatagagtaattaattaataaagtaaacttgattcatgcaccaatctaaatgaagtatttattaaatatttaattatattttataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="+" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="44887" stop="46190"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45187" g_stop="45890" g_length="704"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="704" r_length="704" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="+" ref_id="SGN-E349120" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349120" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45187" e_stop="45890"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTGAATCCATAAAGAAATGATCCAATTAATCCCGATACAAAATGAGAATCGTATGGATGCGATTTTGCATTTCTCGACAAATAAAATGTAGTTTGGTGTTTTAAGCGGGTAATCAATTTTGGGTAAGGAAAAACGTGTCATTCTTACTTAACTCTTGGTTTAGGAATTCCTTATATAACTTAAATGACACAGCAAAAGCGATAAAATACAACCTCAAAATCACACATAGACTACTCGTAAATAATAATTTTAAGAAACATAGTAGAACATGAATTGTTGTATATTGCTATTTTCTTCATGTAGGAGGACACAATATTCCAATAAAATAATGAAATCGTAAGAAAGTACATCAACATATTTAAAAAGGAAATATATAATACTTAGGAAGGAAAGAAAGAAGCGGATAAAAAGAAAAAGAAAATTACTGCACATACAAAATGATCAGCAAAGTTCATTCATTTTTGCATGATAATCTCTCATCGAGTCTTGTCATTTCCATGAAGATCATGCTAGGCAATTTATAGAAATAGCAATTTATAGAAATGCTAGGCAATTAATAATGATTTTAGTCCATATCAAATTTGTATAATGAAAAAACTTTTCAAATACTTATACAATAGAGTAATTAATTAATAAAGTAAACTTGATTCATGCACCAATCTAAATGAGTTATTTATTAAATATTTAATTATATTTTATAA</genome_strand>
        <mrna_strand>GATTTGAATCCATAAAGAAATGATCCAATTAATCCCGATACAAAATGAGAATCGTATGGATGCGATTTTGCACTTCTCAACAAATATAATCTAGTTTGGTGTTCTAAGCGGGTATTCAATTTTGGGTAAGGAAAAACTTGTCATTCTTACTTAACTCTTGGTTTAGGAATTCCTTATATAACTTAAATGACACAGCAAAAGCGATAAAATACAACCTCAAAATCACACATAGACTACTCGTAAATAATAATTTTAAGAAACATAGTAGAACATGAATTGTTGTATATTGCTATTTTCTTCATGTAGGAGGACACAATATTCCAATAAAATAATGAAATCGTAAGAAAGTACATCAACATATTTAAAAAGGAAATATATAATACTTAGGAAGGAAAGAAAGAAGCGGATAAAAAGAAAAAGAAAATTACTGCACATACAAAATGATCAGCAAAGTTCATTCATTTTTGCATGATAATCTCTCATCGAGTCTTGTCATTTCCATGAAGATCATGCTAGGCAATTTATAGAAATAGCAATTTATAGAAATGCTAGGCAATTAATAATGATTTTAGTCCATATCAAATTTGTATAATGAAAAAACTTTTCAAATACTTATACAATAGAGTAATTAATTAATAAAGTAAACTTGATTCATGCACCAATCTAAATGAAGTATTTATTAAATATTTAATTATATTTTATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352014" ref_strand="+" ref_description="SGN-E352014 [cTOS-13-G10]">
      <seq>gatttgaatccataaagaaatgatccaattaatcccgatacaaaatgagaatcgtatggatgcgattttgcacttctcaacaaatataatctagtttggtgttctaagcgggtattcaattttgggtaaggaaaaacttgtcattcttacttaactcttggtttaggaattccttatataacttaaatgacacagcaaaagcgataaaatacaacctcaaaatcacacatagactactcgtaaataataattttaagaaacatagtagaacatgaattgttgtatattgctattttcttcatgtaggaggacacaatattccaataaaataatgaaatcgtaagaaagtacatcaacatatttaaaaaggaaatatataatacttaggaaggaaagaaagaagcggataaaaagaaaaagaaaattactgcacatacaaaatgatcagcaaagttcattcatttttgcatgataatctctcatcgagtcttgtcatttccatgaagatcatgctaggcaatttatagaaatagcaatttatagaaatgctaggcaattaataatgattttagtccatatcaaatttgtataatgaaaaaacttttcaatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="+" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="44887" stop="46098"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45187" g_stop="45798" g_length="612"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="611" r_length="611" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="+" ref_id="SGN-E352014" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352014" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45187" e_stop="45798"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTGAATCCATAAAGAAATGATCCAATTAATCCCGATACAAAATGAGAATCGTATGGATGCGATTTTGCATTTCTCGACAAATAAAATGTAGTTTGGTGTTTTAAGCGGGTAATCAATTTTGGGTAAGGAAAAACGTGTCATTCTTACTTAACTCTTGGTTTAGGAATTCCTTATATAACTTAAATGACACAGCAAAAGCGATAAAATACAACCTCAAAATCACACATAGACTACTCGTAAATAATAATTTTAAGAAACATAGTAGAACATGAATTGTTGTATATTGCTATTTTCTTCATGTAGGAGGACACAATATTCCAATAAAATAATGAAATCGTAAGAAAGTACATCAACATATTTAAAAAGGAAATATATAATACTTAGGAAGGAAAGAAAGAAGCGGATAAAAAGAAAAAGAAAATTACTGCACATACAAAATGATCAGCAAAGTTCATTCATTTTTGCATGATAATCTCTCATCGAGTCTTGTCATTTCCATGAAGATCATGCTAGGCAATTTATAGAAATAGCAATTTATAGAAATGCTAGGCAATTAATAATGATTTTAGTCCATATCAAATTTGTATAATGAAAAAACTTTTCAAATAC</genome_strand>
        <mrna_strand>GATTTGAATCCATAAAGAAATGATCCAATTAATCCCGATACAAAATGAGAATCGTATGGATGCGATTTTGCACTTCTCAACAAATATAATCTAGTTTGGTGTTCTAAGCGGGTATTCAATTTTGGGTAAGGAAAAACTTGTCATTCTTACTTAACTCTTGGTTTAGGAATTCCTTATATAACTTAAATGACACAGCAAAAGCGATAAAATACAACCTCAAAATCACACATAGACTACTCGTAAATAATAATTTTAAGAAACATAGTAGAACATGAATTGTTGTATATTGCTATTTTCTTCATGTAGGAGGACACAATATTCCAATAAAATAATGAAATCGTAAGAAAGTACATCAACATATTTAAAAAGGAAATATATAATACTTAGGAAGGAAAGAAAGAAGCGGATAAAAAGAAAAAGAAAATTACTGCACATACAAAATGATCAGCAAAGTTCATTCATTTTTGCATGATAATCTCTCATCGAGTCTTGTCATTTCCATGAAGATCATGCTAGGCAATTTATAGAAATAGCAATTTATAGAAATGCTAGGCAATTAATAATGATTTTAGTCCATATCAAATTTGTATAATGAAAAAACTTTTC-AATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E543588" ref_strand="+" ref_description="SGN-E543588 [TUS-65-H18](-)">
      <seq>agctgatataaatgcagtacaacgagtttatgatttctacgtaggctggtttgccaatcccttaatatttggcgattatcctgatgtaatgaagaggaatgttgggtctagattgcccgaattcacacacgaagagtctatgcaagttaaaggcgctatagacttcttagcactgaatcattatcaaacaatacatgtcaaagatagctccagcagccttgagagtaaaatcagggactacaccattgatggagcattcgaactaatatacaccgaagaagattctccaccagatcagtttgagtatccagtgacacaaccagggctaggaggaatattagagtatctcaagcaagcttatggcgatattccaatatatattcacgaaaatggtcaaatgacaagacgaaatggtacgttaaatgatacaagaagggtggaatatctgcaagcttacattgggaatgtgcttgaagctatgaggaatggatcaaacgtgaaaggctatttcgtgtggtcattcttagactgttttgagttactggatgcatatggttcaggatttggcttatactatgtggatttggatgacaaagagttaacaagatatccaaagctttcttcacattggtacactaatttcttgaaggggaaagactccaaacatagtgaaattcatcagattgaagataaagtacttcattcttcacaataggtattttgtggtttcatttgtatcttcacaataatgatgtattatttcctaagttggggtggacttttcactttcaatgctgcattcgtgtcgaattctataaaatgcactattttggagaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="53131" stop="50831"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52831" g_stop="52784" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52783" i_stop="52686" i_length="98">
            <donor d_prob="0.802" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52685" g_stop="52465" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="269" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52464" i_stop="52251" i_length="214">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52250" g_stop="52222" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="298" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52221" i_stop="52132" i_length="90">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52131" g_stop="52038" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="392" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52037" i_stop="51922" i_length="116">
            <donor d_prob="0.314" d_score="1.00"/>
            <acceptor a_prob="0.762" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51921" g_stop="51831" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="483" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="51830" i_stop="51486" i_length="345">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="51485" g_stop="51123" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="845" r_length="362" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E543588" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>846</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543588" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52831" e_stop="52784"/>
          <exon e_start="52685" e_stop="52465"/>
          <exon e_start="52250" e_stop="52222"/>
          <exon e_start="52131" e_stop="52038"/>
          <exon e_start="51921" e_stop="51831"/>
          <exon e_start="51485" e_stop="51123"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTGATATAAATGCAGTACAACGAGTTTATGATTTCTACGTAGGCTGGTAAAAAATGCAGAAGTTTGTTTCTTGGTCTATTAACATATCTATCGTACCAAGCTGATCTTGTGGAATGTTGTCATAATTCATATTTTTCAATGCAGGTTTGCCAATCCCTTAATATTTGGCGATTATCCTGATGTAATGAAGAGGAATGTTGGGTCTAGATTGCCCGAATTCACACACGAAGAGTCTATGCAAGTTAAAGGCGCTATAGACTTCTTAGCACTGAATCATTATCAAACAATACATGTCAAAGATAGCTCCAGCAGCCTTGAGAGTAAAATCAGGGACTACACCATTGATGGAGCATTCGAACTAATATGTAAGAATAACGACTTACTCTTAACTTGATCTGTTTGATTTACATTTAAAGATAATAGTCATCTTAAGCTTGGTAATCAAGGTAATCAGTTTACTAATATGTAATATGTAAGGTAATCAGTTTCGTTCTCCTTTATATATTAGCCTGACATGATGAAATTCACTACATCAACGTCTTCCCTGTGTTTTTTTTGTAACATTATGAACTTGTGCAGACACCGAAGAAGATTCTCCACCAGATCAGGTGAGTCTCGCGAACATACATGAATACATGATGACTTTGCCTTGTTTATAAGTTTTTTTTTCAAAAAATTTCATTTGACAATTTGTTCAGTTTGAGTATCCAGTGACACAACCAGGGCTAGGAGGAATATTAGAGTATCTCAAGCAAGCTTATGGCGATATTCCAATATATATTCACGAAAATGGTTCCTCTTCTCTCTCTCTCTCTCTCATGCTCCGGATTTCTGAGCCTTTTGAAAGTTGGTTTAGAGGCTTTTTTTGTAAAAAAGTCTGAGAAAGCTCGATCCAATCTATTTTCCAGGTCAAATGACAAGACGAAATGGTACGTTAAATGATACAAGAAGGGTGGAATATCTGCAAGCTTACATTGGGAATGTGCTTGAAGCTATGAGGTAAGCTCTTCTTTCACAGAGCGGTTTTTTAAAACACGTAGATCAAGCATTTAAGCATGTCATCGTTTCAATCTAGTGATCTTAAACGATCACAACTGTGTAGTCTCCACATGCTCAACAAACCATCTTAGACTTTTAAGTCCAATACTGGCCGAGTCAGAATTTTCACTAAAGGATTCAAAATACAGAGAAGTAAAACTCATGAAGAAGCTAAGAGGATTCAACATCTACTATACATCAATATATGTTTCTGGCACCCCGTGTGCCCTCTTGCTCTGCCTATGCCTGTAACCACGAAGCAATTATGTTTAGACGATATTCATGATGTTATGTTTCTGTTTTTAGGAATGGATCAAACGTGAAAGGCTATTTCGTGTGGTCATTCTTAGACTGTTTTGAGTTACTGGATGCATATGGTTCAGGATTTGGCTTATACTATGTGGATTTGGATGACAAAGAGTTAACAAGATATCCAAAGCTTTCTTCACATTGGTACACTAATTTCTTGAAGGGGAAAGACTCCAAACATAGTGAAATTCATCAGATTGAAGATAAAGTACTTCATTCTTCACAATAGGTATTTTGTGGTTTCATTTGTATCTTCACAATAATGATGTATTATTTCCTAAGTTGGGGTGGACTTTTCACTTTCAATGCTGCATTCGTGTCGAATTCTATAAAATGCACTATTTTTGGAGAATCCGACAT</genome_strand>
        <mrna_strand>AGCTGATATAAATGCAGTACAACGAGTTTATGATTTCTACGTAGGCTG..................................................................................................GTTTGCCAATCCCTTAATATTTGGCGATTATCCTGATGTAATGAAGAGGAATGTTGGGTCTAGATTGCCCGAATTCACACACGAAGAGTCTATGCAAGTTAAAGGCGCTATAGACTTCTTAGCACTGAATCATTATCAAACAATACATGTCAAAGATAGCTCCAGCAGCCTTGAGAGTAAAATCAGGGACTACACCATTGATGGAGCATTCGAACTAATAT......................................................................................................................................................................................................................ACACCGAAGAAGATTCTCCACCAGATCAG..........................................................................................TTTGAGTATCCAGTGACACAACCAGGGCTAGGAGGAATATTAGAGTATCTCAAGCAAGCTTATGGCGATATTCCAATATATATTCACGAAAATG....................................................................................................................GTCAAATGACAAGACGAAATGGTACGTTAAATGATACAAGAAGGGTGGAATATCTGCAAGCTTACATTGGGAATGTGCTTGAAGCTATGAG.........................................................................................................................................................................................................................................................................................................................................................GAATGGATCAAACGTGAAAGGCTATTTCGTGTGGTCATTCTTAGACTGTTTTGAGTTACTGGATGCATATGGTTCAGGATTTGGCTTATACTATGTGGATTTGGATGACAAAGAGTTAACAAGATATCCAAAGCTTTCTTCACATTGGTACACTAATTTCTTGAAGGGGAAAGACTCCAAACATAGTGAAATTCATCAGATTGAAGATAAAGTACTTCATTCTTCACAATAGGTATTTTGTGGTTTCATTTGTATCTTCACAATAATGATGTATTATTTCCTAAGTTGGGGTGGACTTTTCACTTTCAATGCTGCATTCGTGTCGAATTCTATAAAATGCACTA-TTTTGGAGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E312531" ref_strand="+" ref_description="SGN-E312531 [cLEZ-20-F10]">
      <seq>ttcgaactaatatacaccgaagaagattctccaccagatcagtttgagtatccagtgacacaaccagggctaggaggaatattagagtatctcaagcaagcttatggcgatattccaatatatattcacgaaaatggtcaaatgacaagacgaaatggtacgttaaatgatacaagaagggtggaatatctgcaagcttacattgggaatgtgcttgaagctatgaggaatggatcaaacgtgaaaggctatttcgtgtggtcattcttagactgttttgagttactggatgcatatggttcaggatttggcttatactatgtggatttggatgacaaagagttaacaagatatccaaagctttcttcacattggtacactaatttcttgaaggggaaagaactccaaacatagtgaaattcatcagattgaagataaagtacttcattcttcacaataggtattttgtggtttcatttgtatcttcacaataatgatgtattatttcctaagttggggtggacttttcactttcaatgctgcattcgtgtcgaattctataaaatgcactatttttggagaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="52552" stop="50831"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52477" g_stop="52465" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52464" i_stop="52251" i_length="214">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52250" g_stop="52222" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="42" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52221" i_stop="52132" i_length="90">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52131" g_stop="52038" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="136" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52037" i_stop="51922" i_length="116">
            <donor d_prob="0.314" d_score="1.00"/>
            <acceptor a_prob="0.762" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51921" g_stop="51831" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="227" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51830" i_stop="51486" i_length="345">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51485" g_stop="51127" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="587" r_length="360" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E312531" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312531" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52477" e_stop="52465"/>
          <exon e_start="52250" e_stop="52222"/>
          <exon e_start="52131" e_stop="52038"/>
          <exon e_start="51921" e_stop="51831"/>
          <exon e_start="51485" e_stop="51127"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGAACTAATATGTAAGAATAACGACTTACTCTTAACTTGATCTGTTTGATTTACATTTAAAGATAATAGTCATCTTAAGCTTGGTAATCAAGGTAATCAGTTTACTAATATGTAATATGTAAGGTAATCAGTTTCGTTCTCCTTTATATATTAGCCTGACATGATGAAATTCACTACATCAACGTCTTCCCTGTGTTTTTTTTGTAACATTATGAACTTGTGCAGACACCGAAGAAGATTCTCCACCAGATCAGGTGAGTCTCGCGAACATACATGAATACATGATGACTTTGCCTTGTTTATAAGTTTTTTTTTCAAAAAATTTCATTTGACAATTTGTTCAGTTTGAGTATCCAGTGACACAACCAGGGCTAGGAGGAATATTAGAGTATCTCAAGCAAGCTTATGGCGATATTCCAATATATATTCACGAAAATGGTTCCTCTTCTCTCTCTCTCTCTCTCATGCTCCGGATTTCTGAGCCTTTTGAAAGTTGGTTTAGAGGCTTTTTTTGTAAAAAAGTCTGAGAAAGCTCGATCCAATCTATTTTCCAGGTCAAATGACAAGACGAAATGGTACGTTAAATGATACAAGAAGGGTGGAATATCTGCAAGCTTACATTGGGAATGTGCTTGAAGCTATGAGGTAAGCTCTTCTTTCACAGAGCGGTTTTTTAAAACACGTAGATCAAGCATTTAAGCATGTCATCGTTTCAATCTAGTGATCTTAAACGATCACAACTGTGTAGTCTCCACATGCTCAACAAACCATCTTAGACTTTTAAGTCCAATACTGGCCGAGTCAGAATTTTCACTAAAGGATTCAAAATACAGAGAAGTAAAACTCATGAAGAAGCTAAGAGGATTCAACATCTACTATACATCAATATATGTTTCTGGCACCCCGTGTGCCCTCTTGCTCTGCCTATGCCTGTAACCACGAAGCAATTATGTTTAGACGATATTCATGATGTTATGTTTCTGTTTTTAGGAATGGATCAAACGTGAAAGGCTATTTCGTGTGGTCATTCTTAGACTGTTTTGAGTTACTGGATGCATATGGTTCAGGATTTGGCTTATACTATGTGGATTTGGATGACAAAGAGTTAACAAGATATCCAAAGCTTTCTTCACATTGGTACACTAATTTCTTGAAGGGGAAAG-ACTCCAAACATAGTGAAATTCATCAGATTGAAGATAAAGTACTTCATTCTTCACAATAGGTATTTTGTGGTTTCATTTGTATCTTCACAATAATGATGTATTATTTCCTAAGTTGGGGTGGACTTTTCACTTTCAATGCTGCATTCGTGTCGAATTCTATAAAATGCACTATTTTTGGAGAATCCG</genome_strand>
        <mrna_strand>TTCGAACTAATAT......................................................................................................................................................................................................................ACACCGAAGAAGATTCTCCACCAGATCAG..........................................................................................TTTGAGTATCCAGTGACACAACCAGGGCTAGGAGGAATATTAGAGTATCTCAAGCAAGCTTATGGCGATATTCCAATATATATTCACGAAAATG....................................................................................................................GTCAAATGACAAGACGAAATGGTACGTTAAATGATACAAGAAGGGTGGAATATCTGCAAGCTTACATTGGGAATGTGCTTGAAGCTATGAG.........................................................................................................................................................................................................................................................................................................................................................GAATGGATCAAACGTGAAAGGCTATTTCGTGTGGTCATTCTTAGACTGTTTTGAGTTACTGGATGCATATGGTTCAGGATTTGGCTTATACTATGTGGATTTGGATGACAAAGAGTTAACAAGATATCCAAAGCTTTCTTCACATTGGTACACTAATTTCTTGAAGGGGAAAGAACTCCAAACATAGTGAAATTCATCAGATTGAAGATAAAGTACTTCATTCTTCACAATAGGTATTTTGTGGTTTCATTTGTATCTTCACAATAATGATGTATTATTTCCTAAGTTGGGGTGGACTTTTCACTTTCAATGCTGCATTCGTGTCGAATTCTATAAAATGCACTATTTTTGGAGAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E746852" ref_strand="+" ref_description="SGN-E746852 [GI|47104430]">
      <seq>caaattacaaaaatgccgccggcgaagcagctccgggatctgttcacggcgatactgcttgtttttattattgcggcggcggcgaacttgccggttatggtactttccggcgccggtgatgtccgcagatcggattttcctgatactttcgttttcggtgccggttcttctgcttatcaagttgaaggggcagcatttgaagatggaaggatgcctagcatttgggacacctttgctcatgctggtatttatggaggagccaacgcggatgtatcttgtgacgcataccataaatacaaggaagatgtaaaactcatggctgatatgggtttggaagggtacagattttctatttcgtggtcgagacttattccaaatggaagaggttcgattaatcctaaagggttacagtattacaacaatctcatcaatgagctcctccgtcatggaattcaaccacatattacgttatgtcacagtgatataccacaaacgcttcaagatgaatatggtggatggatgagtcgaaagataatcgatgatttcactgcttatgcggatgtgtgcttcaaggaattcggtgacagagtttcatattggactacattaaatgaagtcaatgtgttcactataggtggttatgataatgggatcacacccccaaatcattgttccccacctttcggagctaaaccctgttccgtaggtaactcttcaaccgagccatacatagtagctcataatatactacttgctcattcagccgcggtgagactataccggagaaaatacaagtcaactcaacatggttttgtgggattgaatctctttgcatatcgaccactcccttgtacaaatgtaacagctgatataaatgcagtacaacgagtttatgatttctacgtaggctggtttgccaatcccttaatatttggcgattatcctgatgtaatgaagaggaatgttgggtctagattgcccgaattcacacacgaagagtctatgcaagttaaaggcgctatagacttcttagcactgaatcattatcaaacaatacatgtcaaagatagctccagcagccttgagagtaaaatcagggactacaccattgatggagcattcgaactaatatacaccgaagaagattctccaccagatcagtttgagtatccagtgacacaaccagggctaggaggaatattagagtatctcaagcaagcttatggcgatattccaatatatattcacgaaaatggtcaaatgacaagacgaaatggtacgttaaatgatacaagaagggtggaatatctgcaagcttacattgggaatgtgcttgaagctatgaggaatggatcaaacgtgaaaggctatttcgtgtggtcattcttagactgttttgagttactggatgcatatggttcaggatttggcttatactatgtggatttggatgacaaagagttaacaagatatccaaagctttcttcacattggtacactaatttcttgaaggggaaagactccaaacatagtgaaattcatcagattgaagataaagtacttcattcttcacaataggtattttgtggtttcatttgtatcttcacaataatgatgtattatttcctaagttggggtggacttttcactttcaatgctgcattcgtgtcgaattctataaaatgcactatttttggagaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="56464" stop="50831"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56164" g_stop="55985" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55984" i_stop="54403" i_length="1582">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.733" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54402" g_stop="54339" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="244" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54338" i_stop="53906" i_length="433">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53905" g_stop="53850" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="300" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53849" i_stop="53782" i_length="68">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53781" g_stop="53706" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="376" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53705" i_stop="53608" i_length="98">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53607" g_stop="53536" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="448" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="53535" i_stop="53426" i_length="110">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="53425" g_stop="53338" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="536" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="53337" i_stop="53235" i_length="103">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="53234" g_stop="52976" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="795" r_length="259" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="52975" i_stop="52900" i_length="76">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.774" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="52899" g_stop="52784" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="796" r_stop="911" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="52783" i_stop="52686" i_length="98">
            <donor d_prob="0.802" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="52685" g_stop="52465" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="912" r_stop="1132" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="52464" i_stop="52251" i_length="214">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="52250" g_stop="52222" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1133" r_stop="1161" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="52221" i_stop="52132" i_length="90">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="52131" g_stop="52038" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1162" r_stop="1255" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="52037" i_stop="51922" i_length="116">
            <donor d_prob="0.314" d_score="1.00"/>
            <acceptor a_prob="0.762" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="51921" g_stop="51831" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1256" r_stop="1346" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="51830" i_stop="51486" i_length="345">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="51485" g_stop="51132" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1347" r_stop="1700" r_length="354" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1701" polyA_stop="1714"/>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E746852" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1700</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746852" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56164" e_stop="55985"/>
          <exon e_start="54402" e_stop="54339"/>
          <exon e_start="53905" e_stop="53850"/>
          <exon e_start="53781" e_stop="53706"/>
          <exon e_start="53607" e_stop="53536"/>
          <exon e_start="53425" e_stop="53338"/>
          <exon e_start="53234" e_stop="52976"/>
          <exon e_start="52899" e_stop="52784"/>
          <exon e_start="52685" e_stop="52465"/>
          <exon e_start="52250" e_stop="52222"/>
          <exon e_start="52131" e_stop="52038"/>
          <exon e_start="51921" e_stop="51831"/>
          <exon e_start="51485" e_stop="51132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATTACAAAAATGCCGCCGGCGAAGCAGCTCCGGGATCTGTTCACGGCGATACTGCTTGTTTTTATTATTGCGGCGGCGGCGAACTTGCCGGTTATGGTACTTTCCGGCGCCGGTGATGTCCGCAGATCGGATTTTCCTGATACTTTCGTTTTCGGTGCCGGTTCTTCTGCTTATCAAGTTAGTTTTTTTTAACCATCAATTATTATGTGATTGTTTTAAGTTAGATTTTTAGTATGCATTCAATTAAATCCAACATTTTTTTCACAGAATATTGGTATATGTATGCAAAAACTATACCTTTTTAGTCTGTCTTTTTAGTTAGTCTAAAATAGAATAAAATAAATATCTTCGATAAAAATATCTATCATTTATTTTAGATTAGAAATTTTAATAATCTTCCTTTTTTTTTAAAAAAAATTTCCCGTGAAGTTTAAGTAACTCATATTTATGAGAGAGAGGGAGTATAAGTTAGTCTAACATGAGATGAAATTTTAGAAAGAAAAAAATATTTTCGAAATTTGTAATCTAAATTAAGTTATAGATATTTGTGTAGTTAAAAATTATTTTATTAAAAATAAAATATTTCAAGTCAAATAAATTACGGAAATTAAAATAGAGAAAGTATTACGTTTTGAATCAAAGAAAGACTCATCTAGAATTTCTTGAACATATGTTTTAGTTGGGAATTGATTCCTTTTCCTCTAGGTAAATACTCTTCCTCTCGTTCCACATTAATTTAATTTTTGACATGTTTCACGCCTTTAAGAAAAGTAGACATAAATTGAATTTATTTTTTCATTTTTACCTTTATTAATTATCGTCAAATTTATGATTGAAATTCAACATTAACTAATGAAGCGTAAAATTGAAAGAACACTCTTCAAGTAGTCATGAAAACTGAACAATTAAACTATTTTGAAAAATGAAAAATGCCTCAAAAATTAAATTAATATTGAATATTTAACCTATTGTAATAATTAGAGGTTTTTGGAGTATGAGTGGTAACAAATACTCCCTGTGTCCGATATTGTTTGTCATGTTGCGCTTTTCGAAAGTCAATTAGATTAATTGTCAAAATTAAATTAAATCACATTAATTTGATATTTTATACAAAAAATTAGATATTCTAAAACTAAATGAAAAGTACTGTAAATTGCAACTTTTTGCATATTAATATGATGAAAAAAATACATTTTAAAATGTTAGTCAAAGTTTTTATAATTTAATTTTAAAAATAGAAATCATGACAAACAATACCGAACGGTGATAATAATATTATATTAAATGTAGATAATAATTAAGTACATGAAATCCCTAGTTACGCGGGGAGACTGTTAAAGAATGACAAAAGTCCACATCGGTGGTTAATGAGATGAGTGGACTCCTTATAAGGGTTGGACAAGACCATACGTTATCGTGCATCATAATATACACAATAAATACGCCACTGAGATAACTAGAAAATATATCTGTGCATGAGTTTCAATGTATAGAATATAGTGTTGATTACTGATTAGCAAATATCTATAAAATAGATGCTAATCTATGTGCAATGGTGGAGCTAAGATTTTTATGTAAAAAAATATAAAGAGGTACTTGGCACATGAAGAAAGCGGATGATTCAAAATCTACTTTATATATATAAACGATAATTTTAACTTTATATGTATTCAGTGTAAATTCTTAACAAAGATGATTCATCTTAACCCCATATGGTATCCTGGCTCCAACTCTGACTACGTGGTACGTTTATCGAAAGGTTGAAGGGGCAGCATTTGAAGATGGAAGGATGCCTAGCATTTGGGACACCTTTGCTCATGCTGGTTTGTCTCTTTAATCCTTGTGATTTGCTTCACTAATCTCGGAACACTGCACCAAAAATAATTTTTAGCGGCAATTAATTAACGATAATAGCTTAATTGCGTGTTCTTAGTGACAATTAACATTCTTTGTAAATGTCCATAAATGTCCCAAAGCCTATAGTGACATTAGTACTCTTTCTTTGTTAATGTGCATATTTGTTGCCTCTAAAAACTGTTTTTGTCGTAGTGGAATATGAAGATATGGTTTCTTTACCTTGCATATTATGGTTGTTTCACAGGCTAAATTAATAGATTTGTAATCACATTCTACTTTTCTAAACCATGTACTAGTAATTTCCAAGGATTATTTGGTACGGGATGGGGCAAATGATTTTGCCCCGTCCCTACTGCAGCAGAAAATGACACTAGATTGTACCAACACTAAAATTTTCAGGTATTTATGGAGGAGCCAACGCGGATGTATCTTGTGACGCATACCATAAATACAAGGTCCGAAAGATAGTTCAACTTTGAGTTCATGTAATTGATTATCAGTTAGACTGCTTGTTTATTTGCAGGAAGATGTAAAACTCATGGCTGATATGGGTTTGGAAGGGTACAGATTTTCTATTTCGTGGTCGAGACTTATTCCAAGTAGGCTACATTATCCAACTACTTCGTATAATCGTATCTATAAGGTTGTTATAAGGTTTATATTTCGTTTCATTCCTTGTTTTTGTTTAATCATGTAGATGGAAGAGGTTCGATTAATCCTAAAGGGTTACAGTATTACAACAATCTCATCAATGAGCTCCTCCGTCATGGTTTTAAACAGATCCCCTTATGTGCTAGTTCTTACTTTTTCAATTTCAAGTTTAAATTTCTGCGTGATAGTAATAGATGATATATCACTTGTTTTGATTATGTTTTGTAGGAATTCAACCACATATTACGTTATGTCACAGTGATATACCACAAACGCTTCAAGATGAATATGGTGGATGGATGAGTCGAAAGATAATGTGTGATGAAGATCGAGTACTTCTAATTTTACTTCATAATTTGGCTACTGTATTCTTTTACATCTAACTGAATGCGTAAAAACTGTTTGTGTCTCCCTTTTAGCGATGATTTCACTGCTTATGCGGATGTGTGCTTCAAGGAATTCGGTGACAGAGTTTCATATTGGACTACATTAAATGAAGTCAATGTGTTCACTATAGGTGGTTATGATAATGGGATCACACCCCCAAATCATTGTTCCCCACCTTTCGGAGCTAAACCCTGTTCCGTAGGTAACTCTTCAACCGAGCCATACATAGTAGCTCATAATATACTACTTGCTCATTCAGCCGCGGTGAGACTATACCGGAGAAAATACAAGGTAGCACCTTTTGAACTAAACTACTATTATACTAAAGCCCCAAAATTTTGCTGATGGTGTGCCTGTGTCGCTGCAGTCAACTCAACATGGTTTTGTGGGATTGAATCTCTTTGCATATCGACCACTCCCTTGTACAAATGTAACAGCTGATATAAATGCAGTACAACGAGTTTATGATTTCTACGTAGGCTGGTAAAAAATGCAGAAGTTTGTTTCTTGGTCTATTAACATATCTATCGTACCAAGCTGATCTTGTGGAATGTTGTCATAATTCATATTTTTCAATGCAGGTTTGCCAATCCCTTAATATTTGGCGATTATCCTGATGTAATGAAGAGGAATGTTGGGTCTAGATTGCCCGAATTCACACACGAAGAGTCTATGCAAGTTAAAGGCGCTATAGACTTCTTAGCACTGAATCATTATCAAACAATACATGTCAAAGATAGCTCCAGCAGCCTTGAGAGTAAAATCAGGGACTACACCATTGATGGAGCATTCGAACTAATATGTAAGAATAACGACTTACTCTTAACTTGATCTGTTTGATTTACATTTAAAGATAATAGTCATCTTAAGCTTGGTAATCAAGGTAATCAGTTTACTAATATGTAATATGTAAGGTAATCAGTTTCGTTCTCCTTTATATATTAGCCTGACATGATGAAATTCACTACATCAACGTCTTCCCTGTGTTTTTTTTGTAACATTATGAACTTGTGCAGACACCGAAGAAGATTCTCCACCAGATCAGGTGAGTCTCGCGAACATACATGAATACATGATGACTTTGCCTTGTTTATAAGTTTTTTTTTCAAAAAATTTCATTTGACAATTTGTTCAGTTTGAGTATCCAGTGACACAACCAGGGCTAGGAGGAATATTAGAGTATCTCAAGCAAGCTTATGGCGATATTCCAATATATATTCACGAAAATGGTTCCTCTTCTCTCTCTCTCTCTCTCATGCTCCGGATTTCTGAGCCTTTTGAAAGTTGGTTTAGAGGCTTTTTTTGTAAAAAAGTCTGAGAAAGCTCGATCCAATCTATTTTCCAGGTCAAATGACAAGACGAAATGGTACGTTAAATGATACAAGAAGGGTGGAATATCTGCAAGCTTACATTGGGAATGTGCTTGAAGCTATGAGGTAAGCTCTTCTTTCACAGAGCGGTTTTTTAAAACACGTAGATCAAGCATTTAAGCATGTCATCGTTTCAATCTAGTGATCTTAAACGATCACAACTGTGTAGTCTCCACATGCTCAACAAACCATCTTAGACTTTTAAGTCCAATACTGGCCGAGTCAGAATTTTCACTAAAGGATTCAAAATACAGAGAAGTAAAACTCATGAAGAAGCTAAGAGGATTCAACATCTACTATACATCAATATATGTTTCTGGCACCCCGTGTGCCCTCTTGCTCTGCCTATGCCTGTAACCACGAAGCAATTATGTTTAGACGATATTCATGATGTTATGTTTCTGTTTTTAGGAATGGATCAAACGTGAAAGGCTATTTCGTGTGGTCATTCTTAGACTGTTTTGAGTTACTGGATGCATATGGTTCAGGATTTGGCTTATACTATGTGGATTTGGATGACAAAGAGTTAACAAGATATCCAAAGCTTTCTTCACATTGGTACACTAATTTCTTGAAGGGGAAAGACTCCAAACATAGTGAAATTCATCAGATTGAAGATAAAGTACTTCATTCTTCACAATAGGTATTTTGTGGTTTCATTTGTATCTTCACAATAATGATGTATTATTTCCTAAGTTGGGGTGGACTTTTCACTTTCAATGCTGCATTCGTGTCGAATTCTATAAAATGCACTATTTTTGGAGA</genome_strand>
        <mrna_strand>CAAATTACAAAAATGCCGCCGGCGAAGCAGCTCCGGGATCTGTTCACGGCGATACTGCTTGTTTTTATTATTGCGGCGGCGGCGAACTTGCCGGTTATGGTACTTTCCGGCGCCGGTGATGTCCGCAGATCGGATTTTCCTGATACTTTCGTTTTCGGTGCCGGTTCTTCTGCTTATCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAGGGGCAGCATTTGAAGATGGAAGGATGCCTAGCATTTGGGACACCTTTGCTCATGCTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTATGGAGGAGCCAACGCGGATGTATCTTGTGACGCATACCATAAATACAAG....................................................................GAAGATGTAAAACTCATGGCTGATATGGGTTTGGAAGGGTACAGATTTTCTATTTCGTGGTCGAGACTTATTCCAA..................................................................................................ATGGAAGAGGTTCGATTAATCCTAAAGGGTTACAGTATTACAACAATCTCATCAATGAGCTCCTCCGTCATG..............................................................................................................GAATTCAACCACATATTACGTTATGTCACAGTGATATACCACAAACGCTTCAAGATGAATATGGTGGATGGATGAGTCGAAAGATAAT.......................................................................................................CGATGATTTCACTGCTTATGCGGATGTGTGCTTCAAGGAATTCGGTGACAGAGTTTCATATTGGACTACATTAAATGAAGTCAATGTGTTCACTATAGGTGGTTATGATAATGGGATCACACCCCCAAATCATTGTTCCCCACCTTTCGGAGCTAAACCCTGTTCCGTAGGTAACTCTTCAACCGAGCCATACATAGTAGCTCATAATATACTACTTGCTCATTCAGCCGCGGTGAGACTATACCGGAGAAAATACAAG............................................................................TCAACTCAACATGGTTTTGTGGGATTGAATCTCTTTGCATATCGACCACTCCCTTGTACAAATGTAACAGCTGATATAAATGCAGTACAACGAGTTTATGATTTCTACGTAGGCTG..................................................................................................GTTTGCCAATCCCTTAATATTTGGCGATTATCCTGATGTAATGAAGAGGAATGTTGGGTCTAGATTGCCCGAATTCACACACGAAGAGTCTATGCAAGTTAAAGGCGCTATAGACTTCTTAGCACTGAATCATTATCAAACAATACATGTCAAAGATAGCTCCAGCAGCCTTGAGAGTAAAATCAGGGACTACACCATTGATGGAGCATTCGAACTAATAT......................................................................................................................................................................................................................ACACCGAAGAAGATTCTCCACCAGATCAG..........................................................................................TTTGAGTATCCAGTGACACAACCAGGGCTAGGAGGAATATTAGAGTATCTCAAGCAAGCTTATGGCGATATTCCAATATATATTCACGAAAATG....................................................................................................................GTCAAATGACAAGACGAAATGGTACGTTAAATGATACAAGAAGGGTGGAATATCTGCAAGCTTACATTGGGAATGTGCTTGAAGCTATGAG.........................................................................................................................................................................................................................................................................................................................................................GAATGGATCAAACGTGAAAGGCTATTTCGTGTGGTCATTCTTAGACTGTTTTGAGTTACTGGATGCATATGGTTCAGGATTTGGCTTATACTATGTGGATTTGGATGACAAAGAGTTAACAAGATATCCAAAGCTTTCTTCACATTGGTACACTAATTTCTTGAAGGGGAAAGACTCCAAACATAGTGAAATTCATCAGATTGAAGATAAAGTACTTCATTCTTCACAATAGGTATTTTGTGGTTTCATTTGTATCTTCACAATAATGATGTATTATTTCCTAAGTTGGGGTGGACTTTTCACTTTCAATGCTGCATTCGTGTCGAATTCTATAAAATGCACTATTTTTGGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E565590" ref_strand="+" ref_description="SGN-E565590 [4031]">
      <seq>tgcaagttaaaggcgctatagacttcatagccctgaatcattatcaaacaatacatgtcaaagatagccccagcagccttgagagtaaaatcagggactacaccattgatggagcattcgaacttatatacaccgaagaagattctccaccagatcagtttgagtatccagtgacacaaccgggactaggagaaatattagaatatctcaagcaagcttatggcaatattccaatatatattcacgaaaatggtcaaatgacaagacgaaatgctacgttcaatgatacaagaagggtggaatatctgcaagcttacattgggaatgtgcttgatgctatgaggaatggatcaaacgtgaaaggctatttcgtgtggtcgttcctagactgttttgagttactggatgcatatggttcaggatttggcttatactatgtggatcttggatgacaaagagctaacaagatatccaaagctttcttcacattggtacactaatttcttgaaggggaaagactccaaacataggtgaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="52893" stop="50994"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52593" g_stop="52465" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52464" i_stop="52251" i_length="214">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52250" g_stop="52222" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="158" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52221" i_stop="52132" i_length="90">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52131" g_stop="52038" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="252" r_length="94" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52037" i_stop="51922" i_length="116">
            <donor d_prob="0.314" d_score="0.96"/>
            <acceptor a_prob="0.762" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51921" g_stop="51831" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="343" r_length="91" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51830" i_stop="51486" i_length="345">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.951" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51485" g_stop="51294" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="537" r_length="194" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E565590" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E565590" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52593" e_stop="52465"/>
          <exon e_start="52250" e_stop="52222"/>
          <exon e_start="52131" e_stop="52038"/>
          <exon e_start="51921" e_stop="51831"/>
          <exon e_start="51485" e_stop="51294"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAAGTTAAAGGCGCTATAGACTTCTTAGCACTGAATCATTATCAAACAATACATGTCAAAGATAGCTCCAGCAGCCTTGAGAGTAAAATCAGGGACTACACCATTGATGGAGCATTCGAACTAATATGTAAGAATAACGACTTACTCTTAACTTGATCTGTTTGATTTACATTTAAAGATAATAGTCATCTTAAGCTTGGTAATCAAGGTAATCAGTTTACTAATATGTAATATGTAAGGTAATCAGTTTCGTTCTCCTTTATATATTAGCCTGACATGATGAAATTCACTACATCAACGTCTTCCCTGTGTTTTTTTTGTAACATTATGAACTTGTGCAGACACCGAAGAAGATTCTCCACCAGATCAGGTGAGTCTCGCGAACATACATGAATACATGATGACTTTGCCTTGTTTATAAGTTTTTTTTTCAAAAAATTTCATTTGACAATTTGTTCAGTTTGAGTATCCAGTGACACAACCAGGGCTAGGAGGAATATTAGAGTATCTCAAGCAAGCTTATGGCGATATTCCAATATATATTCACGAAAATGGTTCCTCTTCTCTCTCTCTCTCTCTCATGCTCCGGATTTCTGAGCCTTTTGAAAGTTGGTTTAGAGGCTTTTTTTGTAAAAAAGTCTGAGAAAGCTCGATCCAATCTATTTTCCAGGTCAAATGACAAGACGAAATGGTACGTTAAATGATACAAGAAGGGTGGAATATCTGCAAGCTTACATTGGGAATGTGCTTGAAGCTATGAGGTAAGCTCTTCTTTCACAGAGCGGTTTTTTAAAACACGTAGATCAAGCATTTAAGCATGTCATCGTTTCAATCTAGTGATCTTAAACGATCACAACTGTGTAGTCTCCACATGCTCAACAAACCATCTTAGACTTTTAAGTCCAATACTGGCCGAGTCAGAATTTTCACTAAAGGATTCAAAATACAGAGAAGTAAAACTCATGAAGAAGCTAAGAGGATTCAACATCTACTATACATCAATATATGTTTCTGGCACCCCGTGTGCCCTCTTGCTCTGCCTATGCCTGTAACCACGAAGCAATTATGTTTAGACGATATTCATGATGTTATGTTTCTGTTTTTAGGAATGGATCAAACGTGAAAGGCTATTTCGTGTGGTCATTCTTAGACTGTTTTGAGTTACTGGATGCATATGGTTCAGGATTTGGCTTATACTATGTGGAT-TTGGATGACAAAGAGTTAACAAGATATCCAAAGCTTTCTTCACATTGGTACACTAATTTCTTGAAGGGGAAAGACTCCAAACATA-GTGAAAT</genome_strand>
        <mrna_strand>TGCAAGTTAAAGGCGCTATAGACTTCATAGCCCTGAATCATTATCAAACAATACATGTCAAAGATAGCCCCAGCAGCCTTGAGAGTAAAATCAGGGACTACACCATTGATGGAGCATTCGAACTTATAT......................................................................................................................................................................................................................ACACCGAAGAAGATTCTCCACCAGATCAG..........................................................................................TTTGAGTATCCAGTGACACAACCGGGACTAGGAGAAATATTAGAATATCTCAAGCAAGCTTATGGCAATATTCCAATATATATTCACGAAAATG....................................................................................................................GTCAAATGACAAGACGAAATGCTACGTTCAATGATACAAGAAGGGTGGAATATCTGCAAGCTTACATTGGGAATGTGCTTGATGCTATGAG.........................................................................................................................................................................................................................................................................................................................................................GAATGGATCAAACGTGAAAGGCTATTTCGTGTGGTCGTTCCTAGACTGTTTTGAGTTACTGGATGCATATGGTTCAGGATTTGGCTTATACTATGTGGATCTTGGATGACAAAGAGCTAACAAGATATCCAAAGCTTTCTTCACATTGGTACACTAATTTCTTGAAGGGGAAAGACTCCAAACATAGGTGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E543589" ref_strand="+" ref_description="SGN-E543589 [TUS-65-H18]">
      <seq>caaattacaaaaatgccgccggcgaagcagctccgggatctgttcacggcgatactgcttgtttttattattgcggcggcggcgaacttgccggttatggtactttccggcgccggtgatgtccgcagatcggattttcctgatactttcgttttcggtgccggttcttctgcttatcaagttgaaggggcagcatttgaagatggaaggatgcctagcatttgggacacctttgctcatgctggtatttatggaggagccaacgcggatgtatcttgtgacgcataccataaatacaaggaagatgtaaaactcatggctgatatgggtttggaagggtacagattttctatttcgtggtcgagacttattccaaatggaagaggttcgattaatcctaaagggttacagtattacaacaatctcatcaatgagctcctccgtcatggaattcaaccacatattacgttatgtcacagtgatataccacaaacgcttcaagatgaatatggtggatggatgagtcgaaagataatcgatgatttcactgcttatgcggatgtgtgcttcaaggaattcggtgacagagtttcatattggactacattaaatgaagtcaatgtgttcactataggtggttatgataatgggatcacacccccaaatcattgttccccacctttcggagctaaaccctgttccgtaggtaactcttccaccgagccatacatagtagctcataatatactacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="56464" stop="52717"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56164" g_stop="55985" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55984" i_stop="54403" i_length="1582">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.733" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54402" g_stop="54339" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="244" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54338" i_stop="53906" i_length="433">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53905" g_stop="53850" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="300" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53849" i_stop="53782" i_length="68">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53781" g_stop="53706" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="376" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53705" i_stop="53608" i_length="98">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53607" g_stop="53536" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="448" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="53535" i_stop="53426" i_length="110">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="53425" g_stop="53338" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="536" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="53337" i_stop="53235" i_length="103">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="53234" g_stop="53017" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="754" r_length="218" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E543589" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>754</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543589" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56164" e_stop="55985"/>
          <exon e_start="54402" e_stop="54339"/>
          <exon e_start="53905" e_stop="53850"/>
          <exon e_start="53781" e_stop="53706"/>
          <exon e_start="53607" e_stop="53536"/>
          <exon e_start="53425" e_stop="53338"/>
          <exon e_start="53234" e_stop="53017"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATTACAAAAATGCCGCCGGCGAAGCAGCTCCGGGATCTGTTCACGGCGATACTGCTTGTTTTTATTATTGCGGCGGCGGCGAACTTGCCGGTTATGGTACTTTCCGGCGCCGGTGATGTCCGCAGATCGGATTTTCCTGATACTTTCGTTTTCGGTGCCGGTTCTTCTGCTTATCAAGTTAGTTTTTTTTAACCATCAATTATTATGTGATTGTTTTAAGTTAGATTTTTAGTATGCATTCAATTAAATCCAACATTTTTTTCACAGAATATTGGTATATGTATGCAAAAACTATACCTTTTTAGTCTGTCTTTTTAGTTAGTCTAAAATAGAATAAAATAAATATCTTCGATAAAAATATCTATCATTTATTTTAGATTAGAAATTTTAATAATCTTCCTTTTTTTTTAAAAAAAATTTCCCGTGAAGTTTAAGTAACTCATATTTATGAGAGAGAGGGAGTATAAGTTAGTCTAACATGAGATGAAATTTTAGAAAGAAAAAAATATTTTCGAAATTTGTAATCTAAATTAAGTTATAGATATTTGTGTAGTTAAAAATTATTTTATTAAAAATAAAATATTTCAAGTCAAATAAATTACGGAAATTAAAATAGAGAAAGTATTACGTTTTGAATCAAAGAAAGACTCATCTAGAATTTCTTGAACATATGTTTTAGTTGGGAATTGATTCCTTTTCCTCTAGGTAAATACTCTTCCTCTCGTTCCACATTAATTTAATTTTTGACATGTTTCACGCCTTTAAGAAAAGTAGACATAAATTGAATTTATTTTTTCATTTTTACCTTTATTAATTATCGTCAAATTTATGATTGAAATTCAACATTAACTAATGAAGCGTAAAATTGAAAGAACACTCTTCAAGTAGTCATGAAAACTGAACAATTAAACTATTTTGAAAAATGAAAAATGCCTCAAAAATTAAATTAATATTGAATATTTAACCTATTGTAATAATTAGAGGTTTTTGGAGTATGAGTGGTAACAAATACTCCCTGTGTCCGATATTGTTTGTCATGTTGCGCTTTTCGAAAGTCAATTAGATTAATTGTCAAAATTAAATTAAATCACATTAATTTGATATTTTATACAAAAAATTAGATATTCTAAAACTAAATGAAAAGTACTGTAAATTGCAACTTTTTGCATATTAATATGATGAAAAAAATACATTTTAAAATGTTAGTCAAAGTTTTTATAATTTAATTTTAAAAATAGAAATCATGACAAACAATACCGAACGGTGATAATAATATTATATTAAATGTAGATAATAATTAAGTACATGAAATCCCTAGTTACGCGGGGAGACTGTTAAAGAATGACAAAAGTCCACATCGGTGGTTAATGAGATGAGTGGACTCCTTATAAGGGTTGGACAAGACCATACGTTATCGTGCATCATAATATACACAATAAATACGCCACTGAGATAACTAGAAAATATATCTGTGCATGAGTTTCAATGTATAGAATATAGTGTTGATTACTGATTAGCAAATATCTATAAAATAGATGCTAATCTATGTGCAATGGTGGAGCTAAGATTTTTATGTAAAAAAATATAAAGAGGTACTTGGCACATGAAGAAAGCGGATGATTCAAAATCTACTTTATATATATAAACGATAATTTTAACTTTATATGTATTCAGTGTAAATTCTTAACAAAGATGATTCATCTTAACCCCATATGGTATCCTGGCTCCAACTCTGACTACGTGGTACGTTTATCGAAAGGTTGAAGGGGCAGCATTTGAAGATGGAAGGATGCCTAGCATTTGGGACACCTTTGCTCATGCTGGTTTGTCTCTTTAATCCTTGTGATTTGCTTCACTAATCTCGGAACACTGCACCAAAAATAATTTTTAGCGGCAATTAATTAACGATAATAGCTTAATTGCGTGTTCTTAGTGACAATTAACATTCTTTGTAAATGTCCATAAATGTCCCAAAGCCTATAGTGACATTAGTACTCTTTCTTTGTTAATGTGCATATTTGTTGCCTCTAAAAACTGTTTTTGTCGTAGTGGAATATGAAGATATGGTTTCTTTACCTTGCATATTATGGTTGTTTCACAGGCTAAATTAATAGATTTGTAATCACATTCTACTTTTCTAAACCATGTACTAGTAATTTCCAAGGATTATTTGGTACGGGATGGGGCAAATGATTTTGCCCCGTCCCTACTGCAGCAGAAAATGACACTAGATTGTACCAACACTAAAATTTTCAGGTATTTATGGAGGAGCCAACGCGGATGTATCTTGTGACGCATACCATAAATACAAGGTCCGAAAGATAGTTCAACTTTGAGTTCATGTAATTGATTATCAGTTAGACTGCTTGTTTATTTGCAGGAAGATGTAAAACTCATGGCTGATATGGGTTTGGAAGGGTACAGATTTTCTATTTCGTGGTCGAGACTTATTCCAAGTAGGCTACATTATCCAACTACTTCGTATAATCGTATCTATAAGGTTGTTATAAGGTTTATATTTCGTTTCATTCCTTGTTTTTGTTTAATCATGTAGATGGAAGAGGTTCGATTAATCCTAAAGGGTTACAGTATTACAACAATCTCATCAATGAGCTCCTCCGTCATGGTTTTAAACAGATCCCCTTATGTGCTAGTTCTTACTTTTTCAATTTCAAGTTTAAATTTCTGCGTGATAGTAATAGATGATATATCACTTGTTTTGATTATGTTTTGTAGGAATTCAACCACATATTACGTTATGTCACAGTGATATACCACAAACGCTTCAAGATGAATATGGTGGATGGATGAGTCGAAAGATAATGTGTGATGAAGATCGAGTACTTCTAATTTTACTTCATAATTTGGCTACTGTATTCTTTTACATCTAACTGAATGCGTAAAAACTGTTTGTGTCTCCCTTTTAGCGATGATTTCACTGCTTATGCGGATGTGTGCTTCAAGGAATTCGGTGACAGAGTTTCATATTGGACTACATTAAATGAAGTCAATGTGTTCACTATAGGTGGTTATGATAATGGGATCACACCCCCAAATCATTGTTCCCCACCTTTCGGAGCTAAACCCTGTTCCGTAGGTAACTCTTCAACCGAGCCATACATAGTAGCTCATAATATACTACTTG</genome_strand>
        <mrna_strand>CAAATTACAAAAATGCCGCCGGCGAAGCAGCTCCGGGATCTGTTCACGGCGATACTGCTTGTTTTTATTATTGCGGCGGCGGCGAACTTGCCGGTTATGGTACTTTCCGGCGCCGGTGATGTCCGCAGATCGGATTTTCCTGATACTTTCGTTTTCGGTGCCGGTTCTTCTGCTTATCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAGGGGCAGCATTTGAAGATGGAAGGATGCCTAGCATTTGGGACACCTTTGCTCATGCTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTATGGAGGAGCCAACGCGGATGTATCTTGTGACGCATACCATAAATACAAG....................................................................GAAGATGTAAAACTCATGGCTGATATGGGTTTGGAAGGGTACAGATTTTCTATTTCGTGGTCGAGACTTATTCCAA..................................................................................................ATGGAAGAGGTTCGATTAATCCTAAAGGGTTACAGTATTACAACAATCTCATCAATGAGCTCCTCCGTCATG..............................................................................................................GAATTCAACCACATATTACGTTATGTCACAGTGATATACCACAAACGCTTCAAGATGAATATGGTGGATGGATGAGTCGAAAGATAAT.......................................................................................................CGATGATTTCACTGCTTATGCGGATGTGTGCTTCAAGGAATTCGGTGACAGAGTTTCATATTGGACTACATTAAATGAAGTCAATGTGTTCACTATAGGTGGTTATGATAATGGGATCACACCCCCAAATCATTGTTCCCCACCTTTCGGAGCTAAACCCTGTTCCGTAGGTAACTCTTCCACCGAGCCATACATAGTAGCTCATAATATACTACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E304642" ref_strand="+" ref_description="SGN-E304642 [cLEX-11-E1]">
      <seq>aaattacaaaaatgccgccggcgaagcagctccgggatctgttcacggcgatactgcttgtttttattattgcggcggcggcgaacttgccggttatggtactttccggcgccggtgatgtccgcagatcggattttcctgatactttcgttttcggtgccggttcttctgcttatcaagttgaaggggcagcatttgaagatggaaggatgcctagcatttgggacacctttgctcatgctggtatttatggaggagccaacgcggatgtatcttgtgacgcataccataaatacaaggaagatgtaaaactcatggctgatatgggtttggaagggtacagattttctatttcgtggtcgagacttattccaaatggaagaggttcgattaatcctaaagggttacagtattacaacaatctcatcaatgagctcctccgtcatggaattcaaccacatattacgttatgtcacagtgatataccacaaacgcttcaagatgaatatggtggatggatgagtcgaaagataatcgatgatttcactgcttatgcggatgtgtgcttcaaggaattcggtgacagagtttcatattggactacattaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="56463" stop="52858"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56163" g_stop="55985" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55984" i_stop="54403" i_length="1582">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.733" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54402" g_stop="54339" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="243" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54338" i_stop="53906" i_length="433">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53905" g_stop="53850" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="299" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53849" i_stop="53782" i_length="68">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53781" g_stop="53706" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="375" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53705" i_stop="53608" i_length="98">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53607" g_stop="53536" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="447" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="53535" i_stop="53426" i_length="110">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="53425" g_stop="53338" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="535" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="53337" i_stop="53235" i_length="103">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="53234" g_stop="53158" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="612" r_length="77" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E304642" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304642" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56163" e_stop="55985"/>
          <exon e_start="54402" e_stop="54339"/>
          <exon e_start="53905" e_stop="53850"/>
          <exon e_start="53781" e_stop="53706"/>
          <exon e_start="53607" e_stop="53536"/>
          <exon e_start="53425" e_stop="53338"/>
          <exon e_start="53234" e_stop="53158"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTACAAAAATGCCGCCGGCGAAGCAGCTCCGGGATCTGTTCACGGCGATACTGCTTGTTTTTATTATTGCGGCGGCGGCGAACTTGCCGGTTATGGTACTTTCCGGCGCCGGTGATGTCCGCAGATCGGATTTTCCTGATACTTTCGTTTTCGGTGCCGGTTCTTCTGCTTATCAAGTTAGTTTTTTTTAACCATCAATTATTATGTGATTGTTTTAAGTTAGATTTTTAGTATGCATTCAATTAAATCCAACATTTTTTTCACAGAATATTGGTATATGTATGCAAAAACTATACCTTTTTAGTCTGTCTTTTTAGTTAGTCTAAAATAGAATAAAATAAATATCTTCGATAAAAATATCTATCATTTATTTTAGATTAGAAATTTTAATAATCTTCCTTTTTTTTTAAAAAAAATTTCCCGTGAAGTTTAAGTAACTCATATTTATGAGAGAGAGGGAGTATAAGTTAGTCTAACATGAGATGAAATTTTAGAAAGAAAAAAATATTTTCGAAATTTGTAATCTAAATTAAGTTATAGATATTTGTGTAGTTAAAAATTATTTTATTAAAAATAAAATATTTCAAGTCAAATAAATTACGGAAATTAAAATAGAGAAAGTATTACGTTTTGAATCAAAGAAAGACTCATCTAGAATTTCTTGAACATATGTTTTAGTTGGGAATTGATTCCTTTTCCTCTAGGTAAATACTCTTCCTCTCGTTCCACATTAATTTAATTTTTGACATGTTTCACGCCTTTAAGAAAAGTAGACATAAATTGAATTTATTTTTTCATTTTTACCTTTATTAATTATCGTCAAATTTATGATTGAAATTCAACATTAACTAATGAAGCGTAAAATTGAAAGAACACTCTTCAAGTAGTCATGAAAACTGAACAATTAAACTATTTTGAAAAATGAAAAATGCCTCAAAAATTAAATTAATATTGAATATTTAACCTATTGTAATAATTAGAGGTTTTTGGAGTATGAGTGGTAACAAATACTCCCTGTGTCCGATATTGTTTGTCATGTTGCGCTTTTCGAAAGTCAATTAGATTAATTGTCAAAATTAAATTAAATCACATTAATTTGATATTTTATACAAAAAATTAGATATTCTAAAACTAAATGAAAAGTACTGTAAATTGCAACTTTTTGCATATTAATATGATGAAAAAAATACATTTTAAAATGTTAGTCAAAGTTTTTATAATTTAATTTTAAAAATAGAAATCATGACAAACAATACCGAACGGTGATAATAATATTATATTAAATGTAGATAATAATTAAGTACATGAAATCCCTAGTTACGCGGGGAGACTGTTAAAGAATGACAAAAGTCCACATCGGTGGTTAATGAGATGAGTGGACTCCTTATAAGGGTTGGACAAGACCATACGTTATCGTGCATCATAATATACACAATAAATACGCCACTGAGATAACTAGAAAATATATCTGTGCATGAGTTTCAATGTATAGAATATAGTGTTGATTACTGATTAGCAAATATCTATAAAATAGATGCTAATCTATGTGCAATGGTGGAGCTAAGATTTTTATGTAAAAAAATATAAAGAGGTACTTGGCACATGAAGAAAGCGGATGATTCAAAATCTACTTTATATATATAAACGATAATTTTAACTTTATATGTATTCAGTGTAAATTCTTAACAAAGATGATTCATCTTAACCCCATATGGTATCCTGGCTCCAACTCTGACTACGTGGTACGTTTATCGAAAGGTTGAAGGGGCAGCATTTGAAGATGGAAGGATGCCTAGCATTTGGGACACCTTTGCTCATGCTGGTTTGTCTCTTTAATCCTTGTGATTTGCTTCACTAATCTCGGAACACTGCACCAAAAATAATTTTTAGCGGCAATTAATTAACGATAATAGCTTAATTGCGTGTTCTTAGTGACAATTAACATTCTTTGTAAATGTCCATAAATGTCCCAAAGCCTATAGTGACATTAGTACTCTTTCTTTGTTAATGTGCATATTTGTTGCCTCTAAAAACTGTTTTTGTCGTAGTGGAATATGAAGATATGGTTTCTTTACCTTGCATATTATGGTTGTTTCACAGGCTAAATTAATAGATTTGTAATCACATTCTACTTTTCTAAACCATGTACTAGTAATTTCCAAGGATTATTTGGTACGGGATGGGGCAAATGATTTTGCCCCGTCCCTACTGCAGCAGAAAATGACACTAGATTGTACCAACACTAAAATTTTCAGGTATTTATGGAGGAGCCAACGCGGATGTATCTTGTGACGCATACCATAAATACAAGGTCCGAAAGATAGTTCAACTTTGAGTTCATGTAATTGATTATCAGTTAGACTGCTTGTTTATTTGCAGGAAGATGTAAAACTCATGGCTGATATGGGTTTGGAAGGGTACAGATTTTCTATTTCGTGGTCGAGACTTATTCCAAGTAGGCTACATTATCCAACTACTTCGTATAATCGTATCTATAAGGTTGTTATAAGGTTTATATTTCGTTTCATTCCTTGTTTTTGTTTAATCATGTAGATGGAAGAGGTTCGATTAATCCTAAAGGGTTACAGTATTACAACAATCTCATCAATGAGCTCCTCCGTCATGGTTTTAAACAGATCCCCTTATGTGCTAGTTCTTACTTTTTCAATTTCAAGTTTAAATTTCTGCGTGATAGTAATAGATGATATATCACTTGTTTTGATTATGTTTTGTAGGAATTCAACCACATATTACGTTATGTCACAGTGATATACCACAAACGCTTCAAGATGAATATGGTGGATGGATGAGTCGAAAGATAATGTGTGATGAAGATCGAGTACTTCTAATTTTACTTCATAATTTGGCTACTGTATTCTTTTACATCTAACTGAATGCGTAAAAACTGTTTGTGTCTCCCTTTTAGCGATGATTTCACTGCTTATGCGGATGTGTGCTTCAAGGAATTCGGTGACAGAGTTTCATATTGGACTACATTAAATG</genome_strand>
        <mrna_strand>AAATTACAAAAATGCCGCCGGCGAAGCAGCTCCGGGATCTGTTCACGGCGATACTGCTTGTTTTTATTATTGCGGCGGCGGCGAACTTGCCGGTTATGGTACTTTCCGGCGCCGGTGATGTCCGCAGATCGGATTTTCCTGATACTTTCGTTTTCGGTGCCGGTTCTTCTGCTTATCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAGGGGCAGCATTTGAAGATGGAAGGATGCCTAGCATTTGGGACACCTTTGCTCATGCTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTATGGAGGAGCCAACGCGGATGTATCTTGTGACGCATACCATAAATACAAG....................................................................GAAGATGTAAAACTCATGGCTGATATGGGTTTGGAAGGGTACAGATTTTCTATTTCGTGGTCGAGACTTATTCCAA..................................................................................................ATGGAAGAGGTTCGATTAATCCTAAAGGGTTACAGTATTACAACAATCTCATCAATGAGCTCCTCCGTCATG..............................................................................................................GAATTCAACCACATATTACGTTATGTCACAGTGATATACCACAAACGCTTCAAGATGAATATGGTGGATGGATGAGTCGAAAGATAAT.......................................................................................................CGATGATTTCACTGCTTATGCGGATGTGTGCTTCAAGGAATTCGGTGACAGAGTTTCATATTGGACTACATTAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E724410" ref_strand="+" ref_description="SGN-E724410 [FC24AB06]">
      <seq>gaccaggcactgaaactcttcttcacacattccacaaacctacaaaaaggcttttctacctcttttgcccacaaaaatcagtaaccaaattctcattcttgaatttgttacaacttacaagtgtttttgctgataaatttggtgtttaattccattggattgagcaaggggtttgattctattcatctttttttagatgtcgaattcatgtatggttgatggatttttctcaaaactatcagaggatttgattctcaatatatttttcaagctagaaaatgatccaaggaactgggctcgtttatcttgtgtttcaacgaaatttgcatttctgattcatactatttgttacaaatcgaaatgctctgcaactattccttcggttgtttccgatctagtaagttcgacgtcttcgtgtcctccaggtgggtggtcttcactttacaagctagctgtatgctgtccgggtcttcatcaagctggtgttcttctggagaattctgattttgggcttgaacgtgaaattggtccggatgagagttattcgggtcgggttttccctaaagctgagctgattccttcttcatcgagtaataataataatcggtgtgattctggtgaagttgttgattgtggttggtctttgtttgatgatcttatgtttgatactgtttatgatgcttctgaatcgagttcaaatcacattgaggtcgtcgaggaggaacccacaagctttgtggtgaatcccacaaggcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="61545" stop="60193"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61246" g_stop="60494" g_length="753"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="753" r_length="753" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E724410" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>753</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E724410" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61246" e_stop="60494"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCAGGCACTGAAAATCATCTTCACACATTCCACAAACCTACAAAAAGGCTTTTCTACCTCTTTTGCCCACAAAAATCACTAACCAAATTCTCATTCTTGAATTTGTTACAACTTACAAGTGTTTTTGCTGATAAATTTGGTGTTTAATTCCATTGGATTGAGCAAGGGGTTTGATTCTATTCATCTTTTTTTAGATGTCGAATTCATGTATGGTTGATGGATTTTTCTCAAAACTATCAGAGGATTTGATTCTCAATATATTTTTCAAGCTAGAAGATGATCCAAGGAACTGGGCTCGTTTATCTTGTGTTTCAACGAAATTTGCATTTCTGATTCATACTATTTGTTACAAATCGAAATGCTCTGCAACTATTCCTTCGGTTGTTTCCGATCTAGTAAGTTCGACGTCTTCGTGTCCTCCAGGTGGGTGGTCTTCACTTTACAAGCTAGCTGTATGCTGTCCGGGTCTTCATCAAGCTGGTGTTCTTCTGGAGAATTCTGATTTTGGGCTTGAACGTGAAATTGGTCCGGATGAGAGTTATTCGGGTCGGGTTTTCCCTAAAGCTGAGCTGATTCCTTCTTCATCGAGTAATAATAATAATCGGTGTGATTCTGGTGAAGTTGTTGATTGTGGTTGGTCTTTGTTTGATGATCTTATGTTTGATACTGTTTATGATGCTTCTGAATCGAGTTCAAATCAGATTGAGGTCGTCGAGGAGGAACCCACAAGCTTTGTGGTGAATCCCACAAG</genome_strand>
        <mrna_strand>GACCAGGCACTGAAACTCTTCTTCACACATTCCACAAACCTACAAAAAGGCTTTTCTACCTCTTTTGCCCACAAAAATCAGTAACCAAATTCTCATTCTTGAATTTGTTACAACTTACAAGTGTTTTTGCTGATAAATTTGGTGTTTAATTCCATTGGATTGAGCAAGGGGTTTGATTCTATTCATCTTTTTTTAGATGTCGAATTCATGTATGGTTGATGGATTTTTCTCAAAACTATCAGAGGATTTGATTCTCAATATATTTTTCAAGCTAGAAAATGATCCAAGGAACTGGGCTCGTTTATCTTGTGTTTCAACGAAATTTGCATTTCTGATTCATACTATTTGTTACAAATCGAAATGCTCTGCAACTATTCCTTCGGTTGTTTCCGATCTAGTAAGTTCGACGTCTTCGTGTCCTCCAGGTGGGTGGTCTTCACTTTACAAGCTAGCTGTATGCTGTCCGGGTCTTCATCAAGCTGGTGTTCTTCTGGAGAATTCTGATTTTGGGCTTGAACGTGAAATTGGTCCGGATGAGAGTTATTCGGGTCGGGTTTTCCCTAAAGCTGAGCTGATTCCTTCTTCATCGAGTAATAATAATAATCGGTGTGATTCTGGTGAAGTTGTTGATTGTGGTTGGTCTTTGTTTGATGATCTTATGTTTGATACTGTTTATGATGCTTCTGAATCGAGTTCAAATCACATTGAGGTCGTCGAGGAGGAACCCACAAGCTTTGTGGTGAATCCCACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E321395" ref_strand="+" ref_description="SGN-E321395 [cTOB-23-E17]">
      <seq>aaaatcatcttcacacattccacaaacctacaaaaaggcttttctacctcttttgcccacaaaaatcactaaccaaattctcattcttgaatttgttacaacttacaagtgtttttgctgataaatttggtgtttaattccattggattgagcaaggggtttgattctattcatctttttttagatgtcgaattcatgtatggttgatggatttttctcaaaactatcagaggatttgattctcaatatatttttcaagctagaagatgatccaaggaactgggctcgtttatcttgtgtttcaacgaaatttgcatttctgattcatactatttgttacaaatcgaaatgctctgcaactattccttcggttgtttccgatctagtaagttcgacgtcttcgtgtcctccaggtgggtggtcttcactttacaagctagctgtatgctgtccgggtcttcatcaagctggtgttcttctggagaattctgattttgggcttgaacgtgaaattggtccggatgagagttattcgggtcgggttttccctaaagctgagctgattccttcttcatcgagtaataataataatcggtgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="61534" stop="60335"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61234" g_stop="60635" g_length="600"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="600" r_length="600" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E321395" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321395" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61234" e_stop="60635"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCATCTTCACACATTCCACAAACCTACAAAAAGGCTTTTCTACCTCTTTTGCCCACAAAAATCACTAACCAAATTCTCATTCTTGAATTTGTTACAACTTACAAGTGTTTTTGCTGATAAATTTGGTGTTTAATTCCATTGGATTGAGCAAGGGGTTTGATTCTATTCATCTTTTTTTAGATGTCGAATTCATGTATGGTTGATGGATTTTTCTCAAAACTATCAGAGGATTTGATTCTCAATATATTTTTCAAGCTAGAAGATGATCCAAGGAACTGGGCTCGTTTATCTTGTGTTTCAACGAAATTTGCATTTCTGATTCATACTATTTGTTACAAATCGAAATGCTCTGCAACTATTCCTTCGGTTGTTTCCGATCTAGTAAGTTCGACGTCTTCGTGTCCTCCAGGTGGGTGGTCTTCACTTTACAAGCTAGCTGTATGCTGTCCGGGTCTTCATCAAGCTGGTGTTCTTCTGGAGAATTCTGATTTTGGGCTTGAACGTGAAATTGGTCCGGATGAGAGTTATTCGGGTCGGGTTTTCCCTAAAGCTGAGCTGATTCCTTCTTCATCGAGTAATAATAATAATCGGTGTGA</genome_strand>
        <mrna_strand>AAAATCATCTTCACACATTCCACAAACCTACAAAAAGGCTTTTCTACCTCTTTTGCCCACAAAAATCACTAACCAAATTCTCATTCTTGAATTTGTTACAACTTACAAGTGTTTTTGCTGATAAATTTGGTGTTTAATTCCATTGGATTGAGCAAGGGGTTTGATTCTATTCATCTTTTTTTAGATGTCGAATTCATGTATGGTTGATGGATTTTTCTCAAAACTATCAGAGGATTTGATTCTCAATATATTTTTCAAGCTAGAAGATGATCCAAGGAACTGGGCTCGTTTATCTTGTGTTTCAACGAAATTTGCATTTCTGATTCATACTATTTGTTACAAATCGAAATGCTCTGCAACTATTCCTTCGGTTGTTTCCGATCTAGTAAGTTCGACGTCTTCGTGTCCTCCAGGTGGGTGGTCTTCACTTTACAAGCTAGCTGTATGCTGTCCGGGTCTTCATCAAGCTGGTGTTCTTCTGGAGAATTCTGATTTTGGGCTTGAACGTGAAATTGGTCCGGATGAGAGTTATTCGGGTCGGGTTTTCCCTAAAGCTGAGCTGATTCCTTCTTCATCGAGTAATAATAATAATCGGTGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E295700" ref_strand="+" ref_description="SGN-E295700 [cLET-25-J2]">
      <seq>aaaatcatcttcacacattccacaaacctacaaaaaggcttttctacctcttttgcccacaaaaatcactaaccaaattctcattcttgaatttgatacaacttacaagtgtttttgctgataaatttggtgtttaattccattggatagagcaaggggtttgattctattcatctttttttagatgtcgaattcatgtatgggtgatggatttttctcaaaactatcataggatttgattgtcaatatattttctcaagctagaagatgatccaaggaactgggctcgtttatcttgtgtatcaacgaaatttgcatttctgattcatactatgggttacaaatcgaaatgctctgcaactattccttcggttgttatcgatctagtaagttcgacgtcttcgagtcctccaggtgggtggtcttcactttacaagctaactgtatgctgtccgggtcttcatcaagctggtgatcttatggagaattctgattttgggcttgaacgtgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="61534" stop="60424"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61234" g_stop="60724" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="512" r_length="512" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E295700" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295700" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61234" e_stop="60724"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCATCTTCACACATTCCACAAACCTACAAAAAGGCTTTTCTACCTCTTTTGCCCACAAAAATCACTAACCAAATTCTCATTCTTGAATTTGTTACAACTTACAAGTGTTTTTGCTGATAAATTTGGTGTTTAATTCCATTGGATTGAGCAAGGGGTTTGATTCTATTCATCTTTTTTTAGATGTCGAATTCATGTATGGTTGATGGATTTTTCTCAAAACTATCAGAGGATTTGATTCTCAATATATTTT-TCAAGCTAGAAGATGATCCAAGGAACTGGGCTCGTTTATCTTGTGTTTCAACGAAATTTGCATTTCTGATTCATACTATTTGTTACAAATCGAAATGCTCTGCAACTATTCCTTCGGTTGTTTCCGATCTAGTAAGTTCGACGTCTTCGTGTCCTCCAGGTGGGTGGTCTTCACTTTACAAGCTAGCTGTATGCTGTCCGGGTCTTCATCAAGCTGGTGTTCTTCTGGAGAATTCTGATTTTGGGCTTGAACGTGAA</genome_strand>
        <mrna_strand>AAAATCATCTTCACACATTCCACAAACCTACAAAAAGGCTTTTCTACCTCTTTTGCCCACAAAAATCACTAACCAAATTCTCATTCTTGAATTTGATACAACTTACAAGTGTTTTTGCTGATAAATTTGGTGTTTAATTCCATTGGATAGAGCAAGGGGTTTGATTCTATTCATCTTTTTTTAGATGTCGAATTCATGTATGGGTGATGGATTTTTCTCAAAACTATCATAGGATTTGATTGTCAATATATTTTCTCAAGCTAGAAGATGATCCAAGGAACTGGGCTCGTTTATCTTGTGTATCAACGAAATTTGCATTTCTGATTCATACTATGGGTTACAAATCGAAATGCTCTGCAACTATTCCTTCGGTTGTTATCGATCTAGTAAGTTCGACGTCTTCGAGTCCTCCAGGTGGGTGGTCTTCACTTTACAAGCTAACTGTATGCTGTCCGGGTCTTCATCAAGCTGGTGATCTTATGGAGAATTCTGATTTTGGGCTTGAACGTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E337958" ref_strand="+" ref_description="SGN-E337958 [cTOE-14-E5]">
      <seq>cctcttttgcccacaaaaatcactaaccaaattctcattcttgaatttgttacaacttacaagtgtttttgctgataaatttggtgtttaattccattggattgagcaaggggtttgattctattcatctttttttagatgtcgaattcatgtatggttgatggatttttctcaaaactatcagaggatttgattctcaatatatttttcaagctagaagatgatccaaggaactgggctcgtttatcttgtgtttcaacgaaatttgcatttctgattcatactatttgttacaaatcgaaatgctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="61488" stop="60580"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61188" g_stop="60880" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="309" r_length="309" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E337958" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>309</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337958" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61188" e_stop="60880"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTTTTGCCCACAAAAATCACTAACCAAATTCTCATTCTTGAATTTGTTACAACTTACAAGTGTTTTTGCTGATAAATTTGGTGTTTAATTCCATTGGATTGAGCAAGGGGTTTGATTCTATTCATCTTTTTTTAGATGTCGAATTCATGTATGGTTGATGGATTTTTCTCAAAACTATCAGAGGATTTGATTCTCAATATATTTTTCAAGCTAGAAGATGATCCAAGGAACTGGGCTCGTTTATCTTGTGTTTCAACGAAATTTGCATTTCTGATTCATACTATTTGTTACAAATCGAAATGCTCT</genome_strand>
        <mrna_strand>CCTCTTTTGCCCACAAAAATCACTAACCAAATTCTCATTCTTGAATTTGTTACAACTTACAAGTGTTTTTGCTGATAAATTTGGTGTTTAATTCCATTGGATTGAGCAAGGGGTTTGATTCTATTCATCTTTTTTTAGATGTCGAATTCATGTATGGTTGATGGATTTTTCTCAAAACTATCAGAGGATTTGATTCTCAATATATTTTTCAAGCTAGAAGATGATCCAAGGAACTGGGCTCGTTTATCTTGTGTTTCAACGAAATTTGCATTTCTGATTCATACTATTTGTTACAAATCGAAATGCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E289988" ref_strand="+" ref_description="SGN-E289988 [cLET-9-N12]">
      <seq>tgaaaatcatcttcacacattccacaaacctacaaaaaggcttttctacctcttttgcccacaaaaatcactaaccaaattctcattcttgaatttgttacaacttacaagtgtttttgctgataaatttggtgtttaattccattggattgagcaaggggtttgattctattcatctttttttagatgtcgaattcatgtatggttgatggatttttctcaaaactatcagaggatttgattctcaatatatttttcaagctagaagatgatccaaggaactgggctcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="61536" stop="60647"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61236" g_stop="60947" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="290" r_length="290" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E289988" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>290</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289988" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61236" e_stop="60947"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAATCATCTTCACACATTCCACAAACCTACAAAAAGGCTTTTCTACCTCTTTTGCCCACAAAAATCACTAACCAAATTCTCATTCTTGAATTTGTTACAACTTACAAGTGTTTTTGCTGATAAATTTGGTGTTTAATTCCATTGGATTGAGCAAGGGGTTTGATTCTATTCATCTTTTTTTAGATGTCGAATTCATGTATGGTTGATGGATTTTTCTCAAAACTATCAGAGGATTTGATTCTCAATATATTTTTCAAGCTAGAAGATGATCCAAGGAACTGGGCTCG</genome_strand>
        <mrna_strand>TGAAAATCATCTTCACACATTCCACAAACCTACAAAAAGGCTTTTCTACCTCTTTTGCCCACAAAAATCACTAACCAAATTCTCATTCTTGAATTTGTTACAACTTACAAGTGTTTTTGCTGATAAATTTGGTGTTTAATTCCATTGGATTGAGCAAGGGGTTTGATTCTATTCATCTTTTTTTAGATGTCGAATTCATGTATGGTTGATGGATTTTTCTCAAAACTATCAGAGGATTTGATTCTCAATATATTTTTCAAGCTAGAAGATGATCCAAGGAACTGGGCTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E346155" ref_strand="+" ref_description="SGN-E346155 [cTOF-34-E17]">
      <seq>ttagtcgaagccgaagccgtagccgaagtagaagccgaagcaagagcaaaagcaaatctcctaaagttaagtcttcaaagcgctcaagatctcgttcaaggtctgtgtcttctcagtctcgttctgggtcaaaaggacgtcctgtctcaagatctccatcaaggtccagatcaccagcaccagctcgttcaaaacaattaagtgaaagtcccaaaagacgcactcccagcagtagccccaaaagacgcactccaagcagaagcccaagccggagtaggagccgtagccaaagtttgtccaggtaagattgctggaatcatcagtgattgagggtgccatcatgctgtgtttgagcagcctggtccacagttgggagcccaagtgaccggaagagtctgttgctctgcttacatcaaaatatttctgtgtcattgaaccatgtcaagactgtaataattattatacttgtttttgtagctcttaatcttggtaaaagactgcaatatagtagatgatattgtgaaaaacggaatttaatttccttgaattgcagattattgttggtcgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="65181" stop="62107"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64881" g_stop="64830" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64829" i_stop="64748" i_length="82">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.433" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64747" g_stop="64649" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="151" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64648" i_stop="63076" i_length="1573">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63075" g_stop="63042" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="185" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63041" i_stop="62869" i_length="173">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62868" g_stop="62753" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="301" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="62752" i_stop="62674" i_length="79">
            <donor d_prob="0.906" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="62673" g_stop="62401" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="574" r_length="273" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E346155" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346155" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64881" e_stop="64830"/>
          <exon e_start="64747" e_stop="64649"/>
          <exon e_start="63075" e_stop="63042"/>
          <exon e_start="62868" e_stop="62753"/>
          <exon e_start="62673" e_stop="62401"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGTCGAAGCCGAAGCCGTAGCCGAAGTAGAAGCCGAAGCAAGAGCAAAAGGTCTAACACATTACACATATATGTCTGGACTAGTGGTTTTACTTTAATGCAAATAGGGCCTTATTAATATTTGTCTTAGCAGCAAATCTCCTAAAGTTAAGTCTTCAAAGCGCTCAAGATCTCGTTCAAGGTCTGTGTCTTCTCAGTCTCGTTCTGGGTCAAAAGGACGTCCTGTCTCAAGGTAATATTCTGCTTTCTCTTTCTGTTTTTGTTTCGGGATGGGTATAAAAGCATTACATAGTACAAGGTTAATATTTGCATAAACTGCAAATCTTTCATTCTTTATTATCTTATTAGAGTTCTTCAATTTCTCAAGTTGTTCTTCACACTCAAAGTATTGTTGATTTAAGATCTTTAAATCTAAAATGCTCTTGCAGTTGATTACTTTGCCTTTTATCTTCTATGTTATTGTTAGTTTGATGTGCTCACTGCAAAGTTCACATCAAAATGGTGTAGACTCCTGGGTGCTTTAGTCTTCTTTGTTTAACTTGTCCTTGATGCTTTCCCCTTGGTTCTTTCTAAACAATATAGCAATGAGAAGCTATTAGTCTCATATATCATGCATAAAACTCCAAATCCAATCTTATTTGTTTTTTATTATCTTGTCCCTCTAACACAATCTTGTGGTAATTTGTCATATGTGGGGGTACAACGGATTTATGGTAAGTTGTAGAATACAATTTTCCAAAGGTTGCATTTTCTGGCGGCAATCTAGTTGGTAATGTGTAGTTCTGCATACTCTAGTGGGACAACGTGTAGTTACATTTATGTTATTTTCTTCTGTTTCAGGACGGATTTTAAGGGGTTTAGAACTTGCAATGACGTTATCAAACCATTAGAATCAACCAAATGATTGAAAACTATGGTTTCTCACTTTTTTTCTCCATTTTTTCCCCCTATGAAACAAGATTTCATATTCATTTGTTTCCTGCTATTTCAGGATTTTCCAACTATGTTTGCTGATCAATGTGTAACCATTTAGTAAAGACTGGTCATTAGATAGGTTCATGTCTGTTGAAACAAAATTAGAAATTGGAAAGGTTTAGGTCTGAGCAATACAGAAGTAAAGTTTAGTGTTTGAAGGGGAGACTTGGTTCATTTACTTAAGTCATTTTGGAACTGTATTCTAGGGGAAACATACTGCCTTATCAAGGTGTCGTCTTTTATCGTTTCTTTTATAAGTATGAAAAGTCACCTTGTTTGTTTTTCTAGATTTTGGATATGTGCGGCGGTTTGTGGATTTGCATATTAGGATCTTGAGTGGATAATGGTCTTGCCTGCAACTCTTTTTGTTGTGGAGGTACGATGTTTTCTAGATGGCAGCTTTGGGTCTTTTTGTGATGTCTCTCTTCTAATGAGCATCGTGAAATGTTCCATGGGTGCTAGATTGGGATCATGAAGATCACGGATTCTATGGTGGAGCTGGACTGGGGAACCAACTGCCACCTGAATTTGGATCACCACCTATTTTTTGGTAGAAGCATGTTCTAACAAAGCGAAATAAAGACTAGTTCATTCTTTTGGTATCCTGCTAATTGGTCTCTTTGACTGCTCGAATTTAAAATATTACATAGTCTCAATGGTGTAACTTGCATTGTTTTATACTTGCCATATTTTCCACTCTGGATTCTGCCAAATTGCTACTTTCATTATGGTCATGCTGAGGTGGAAGTGAAATCAAAGCAGTTGTGGAGGAAACTTGTTAAGTGGCGGGACTGGGATATTAAATTAAGTTCTTTCTGGAAATTTTGCAGATCTCCATCAAGGTCCAGATCACCAGCACCAGCTGTAAGTCAAATCTACATGTTTTAAAGTGAACGGAATAACCCAAAATTCAAATATATTGGGATCATCCGTCTTGTCTGTCTTTTTTTTGTGCTTACCTGGCCTTTTCAAAGTACATTCTCTCTTTTCTCTGTCTACATAATTATTGCTTTGTATTATGACTGGGTTAATTACAGCGTTCAAAACAATTAAGTGAAAGTCCCAAAAGACGCACTCCCAGCAGTAGCCCCAAAAGACGCACTCCAAGCAGAAGCCCAAGCCGGAGTAGGAGCCGTAGCCAAAGTTTGTCCAGGTCTTACTTCTGTGGCTTGTCGTATATCTTTCAATGTTTGACCGTTTCGTTAATTTTTTCTCCTCGCCTCTTTTTATAGGTAAGATTGCTGGAATCATCAGTGATTGAGGGTGCCATCATGCTGTGTTTGAGCAGCCTGGTCCACAGTTGGGAGCCCAAGTGACCGGAAGAGTCTGTTGCTCTGCTTACATCAAAATATTTCTGTGTCATTGAACCATGTCAAGACTGTAATAATTATTATACTTGTTTTTGTAGCTCTTAATCTTGGTAAAAGACTGCAATATAGTAGATGATATTGTGAAAAACGGAATTTAATTTCCTTGAATTGCAGATTATTGTTGGTCGACTGATG</genome_strand>
        <mrna_strand>TTAGTCGAAGCCGAAGCCGTAGCCGAAGTAGAAGCCGAAGCAAGAGCAAAAG..................................................................................CAAATCTCCTAAAGTTAAGTCTTCAAAGCGCTCAAGATCTCGTTCAAGGTCTGTGTCTTCTCAGTCTCGTTCTGGGTCAAAAGGACGTCCTGTCTCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCCATCAAGGTCCAGATCACCAGCACCAGCT.............................................................................................................................................................................CGTTCAAAACAATTAAGTGAAAGTCCCAAAAGACGCACTCCCAGCAGTAGCCCCAAAAGACGCACTCCAAGCAGAAGCCCAAGCCGGAGTAGGAGCCGTAGCCAAAGTTTGTCCAG...............................................................................GTAAGATTGCTGGAATCATCAGTGATTGAGGGTGCCATCATGCTGTGTTTGAGCAGCCTGGTCCACAGTTGGGAGCCCAAGTGACCGGAAGAGTCTGTTGCTCTGCTTACATCAAAATATTTCTGTGTCATTGAACCATGTCAAGACTGTAATAATTATTATACTTGTTTTTGTAGCTCTTAATCTTGGTAAAAGACTGCAATATAGTAGATGATATTGTGAAAAACGGAATTTAATTTCCTTGAATTGCAGATTATTGTTGGTCGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E377976" ref_strand="+" ref_description="SGN-E377976 [TUS-20-H16](-)">
      <seq>attttttggtagaagcatgttctaacaaagcgaaataaagactagttcattcttttggtatcctgctaattggtctctttgactgctcgaatttaaaatattacatagtctcaatggtgtaacttgcatcgttttatacttgccatattttccactctggattctgccaaattgctactttcattatggtcatgctgaggtggaagtgaaatcaaagcagttgtggaggaaacttgttaagtggcgggactgggatattaaattaagttctttctggaaattttgcagatctccatcaaggtccagatcaccagcaccagctcgttcaaaacaattaagtgaaagtcccaaaagacgcactcccagcagtagccccaaaagacgcactccaagcagaagcccaagccggagtaggagccgtagccaaagtttgtccaggtaagattgctggaatcatcagtgattgagggtgccatcatgctgtgtttgagcagcctggtccacagttgggagcccaagtgaccggaagagtctgttgctctgcttacatcaaaatatttctgtgtcattgaaccatgtcaagactgtaataattattatacttgtttttgtagctcttaatcttggtaaaagactgcaatatagtagatgatattgtgaaaaacggaatttaatttccttgaattgcagattattgtggtcgaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="63663" stop="62107"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63363" g_stop="63042" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="322" r_length="322" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63041" i_stop="62869" i_length="173">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62868" g_stop="62753" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="438" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62752" i_stop="62674" i_length="79">
            <donor d_prob="0.906" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62673" g_stop="62401" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="710" r_length="272" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E377976" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E377976" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63363" e_stop="63042"/>
          <exon e_start="62868" e_stop="62753"/>
          <exon e_start="62673" e_stop="62401"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTTGGTAGAAGCATGTTCTAACAAAGCGAAATAAAGACTAGTTCATTCTTTTGGTATCCTGCTAATTGGTCTCTTTGACTGCTCGAATTTAAAATATTACATAGTCTCAATGGTGTAACTTGCATTGTTTTATACTTGCCATATTTTCCACTCTGGATTCTGCCAAATTGCTACTTTCATTATGGTCATGCTGAGGTGGAAGTGAAATCAAAGCAGTTGTGGAGGAAACTTGTTAAGTGGCGGGACTGGGATATTAAATTAAGTTCTTTCTGGAAATTTTGCAGATCTCCATCAAGGTCCAGATCACCAGCACCAGCTGTAAGTCAAATCTACATGTTTTAAAGTGAACGGAATAACCCAAAATTCAAATATATTGGGATCATCCGTCTTGTCTGTCTTTTTTTTGTGCTTACCTGGCCTTTTCAAAGTACATTCTCTCTTTTCTCTGTCTACATAATTATTGCTTTGTATTATGACTGGGTTAATTACAGCGTTCAAAACAATTAAGTGAAAGTCCCAAAAGACGCACTCCCAGCAGTAGCCCCAAAAGACGCACTCCAAGCAGAAGCCCAAGCCGGAGTAGGAGCCGTAGCCAAAGTTTGTCCAGGTCTTACTTCTGTGGCTTGTCGTATATCTTTCAATGTTTGACCGTTTCGTTAATTTTTTCTCCTCGCCTCTTTTTATAGGTAAGATTGCTGGAATCATCAGTGATTGAGGGTGCCATCATGCTGTGTTTGAGCAGCCTGGTCCACAGTTGGGAGCCCAAGTGACCGGAAGAGTCTGTTGCTCTGCTTACATCAAAATATTTCTGTGTCATTGAACCATGTCAAGACTGTAATAATTATTATACTTGTTTTTGTAGCTCTTAATCTTGGTAAAAGACTGCAATATAGTAGATGATATTGTGAAAAACGGAATTTAATTTCCTTGAATTGCAGATTATTGTTGGTCGACTGATG</genome_strand>
        <mrna_strand>ATTTTTTGGTAGAAGCATGTTCTAACAAAGCGAAATAAAGACTAGTTCATTCTTTTGGTATCCTGCTAATTGGTCTCTTTGACTGCTCGAATTTAAAATATTACATAGTCTCAATGGTGTAACTTGCATCGTTTTATACTTGCCATATTTTCCACTCTGGATTCTGCCAAATTGCTACTTTCATTATGGTCATGCTGAGGTGGAAGTGAAATCAAAGCAGTTGTGGAGGAAACTTGTTAAGTGGCGGGACTGGGATATTAAATTAAGTTCTTTCTGGAAATTTTGCAGATCTCCATCAAGGTCCAGATCACCAGCACCAGCT.............................................................................................................................................................................CGTTCAAAACAATTAAGTGAAAGTCCCAAAAGACGCACTCCCAGCAGTAGCCCCAAAAGACGCACTCCAAGCAGAAGCCCAAGCCGGAGTAGGAGCCGTAGCCAAAGTTTGTCCAG...............................................................................GTAAGATTGCTGGAATCATCAGTGATTGAGGGTGCCATCATGCTGTGTTTGAGCAGCCTGGTCCACAGTTGGGAGCCCAAGTGACCGGAAGAGTCTGTTGCTCTGCTTACATCAAAATATTTCTGTGTCATTGAACCATGTCAAGACTGTAATAATTATTATACTTGTTTTTGTAGCTCTTAATCTTGGTAAAAGACTGCAATATAGTAGATGATATTGTGAAAAACGGAATTTAATTTCCTTGAATTGCAGATTATTG-TGGTCGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E351570" ref_strand="+" ref_description="SGN-E351570 [cTOS-12-F13]">
      <seq>acgcactcccagcagtagccccaaaagacgcactccaagcagaagcccaagccggagtaggagccgtagccaaagtttgtccaggtaagattgctggaatcatcagtgattgagggtgccatcatgctgtgtttgagcagcctggtccacagttgggagcccaagtgaccggaagagtctgttgctctgcttacatcaaaatatttctgtgtcattgaaccatgtcaagactgtaataattattatacttgtttttgtagctcttaatcttggtaaaagactgcaatatagtagatgatattgtgaaaaacggaatttaatttccttgaattgcagattattgttggtcgactgaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="63136" stop="62103"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62836" g_stop="62753" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62752" i_stop="62674" i_length="79">
            <donor d_prob="0.906" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62673" g_stop="62401" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="357" r_length="273" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="358" polyA_stop="373"/>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E351570" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>357</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351570" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62836" e_stop="62753"/>
          <exon e_start="62673" e_stop="62401"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGCACTCCCAGCAGTAGCCCCAAAAGACGCACTCCAAGCAGAAGCCCAAGCCGGAGTAGGAGCCGTAGCCAAAGTTTGTCCAGGTCTTACTTCTGTGGCTTGTCGTATATCTTTCAATGTTTGACCGTTTCGTTAATTTTTTCTCCTCGCCTCTTTTTATAGGTAAGATTGCTGGAATCATCAGTGATTGAGGGTGCCATCATGCTGTGTTTGAGCAGCCTGGTCCACAGTTGGGAGCCCAAGTGACCGGAAGAGTCTGTTGCTCTGCTTACATCAAAATATTTCTGTGTCATTGAACCATGTCAAGACTGTAATAATTATTATACTTGTTTTTGTAGCTCTTAATCTTGGTAAAAGACTGCAATATAGTAGATGATATTGTGAAAAACGGAATTTAATTTCCTTGAATTGCAGATTATTGTTGGTCGACTGATG</genome_strand>
        <mrna_strand>ACGCACTCCCAGCAGTAGCCCCAAAAGACGCACTCCAAGCAGAAGCCCAAGCCGGAGTAGGAGCCGTAGCCAAAGTTTGTCCAG...............................................................................GTAAGATTGCTGGAATCATCAGTGATTGAGGGTGCCATCATGCTGTGTTTGAGCAGCCTGGTCCACAGTTGGGAGCCCAAGTGACCGGAAGAGTCTGTTGCTCTGCTTACATCAAAATATTTCTGTGTCATTGAACCATGTCAAGACTGTAATAATTATTATACTTGTTTTTGTAGCTCTTAATCTTGGTAAAAGACTGCAATATAGTAGATGATATTGTGAAAAACGGAATTTAATTTCCTTGAATTGCAGATTATTGTTGGTCGACTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352650" ref_strand="+" ref_description="SGN-E352650 [cTOS-11-I23]">
      <seq>acgcactcccagcagtagccccaaaagacgcactccaagcagaagcccaagccggagtaggagccgtagccaaagtttgtccaggtaagattgctggaatcatcagtgattgagggtgccatcatgctgtgtttgagcagcctggtccacagttgggagcccaagtgaccggaagagtctgttgctctgcttacatcaaaatatttctgtgtcattgaaccatgtcaagactgtaataattattatacttgtttttgtagctcttaatcttggtaaaagactgcaatatagtagatgatattgtgaaaaacggaatttaatttccttgaattgcagattattgttggtcgactgaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="63136" stop="62103"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62836" g_stop="62753" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62752" i_stop="62674" i_length="79">
            <donor d_prob="0.906" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62673" g_stop="62401" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="357" r_length="273" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="358" polyA_stop="373"/>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E352650" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>357</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352650" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62836" e_stop="62753"/>
          <exon e_start="62673" e_stop="62401"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGCACTCCCAGCAGTAGCCCCAAAAGACGCACTCCAAGCAGAAGCCCAAGCCGGAGTAGGAGCCGTAGCCAAAGTTTGTCCAGGTCTTACTTCTGTGGCTTGTCGTATATCTTTCAATGTTTGACCGTTTCGTTAATTTTTTCTCCTCGCCTCTTTTTATAGGTAAGATTGCTGGAATCATCAGTGATTGAGGGTGCCATCATGCTGTGTTTGAGCAGCCTGGTCCACAGTTGGGAGCCCAAGTGACCGGAAGAGTCTGTTGCTCTGCTTACATCAAAATATTTCTGTGTCATTGAACCATGTCAAGACTGTAATAATTATTATACTTGTTTTTGTAGCTCTTAATCTTGGTAAAAGACTGCAATATAGTAGATGATATTGTGAAAAACGGAATTTAATTTCCTTGAATTGCAGATTATTGTTGGTCGACTGATG</genome_strand>
        <mrna_strand>ACGCACTCCCAGCAGTAGCCCCAAAAGACGCACTCCAAGCAGAAGCCCAAGCCGGAGTAGGAGCCGTAGCCAAAGTTTGTCCAG...............................................................................GTAAGATTGCTGGAATCATCAGTGATTGAGGGTGCCATCATGCTGTGTTTGAGCAGCCTGGTCCACAGTTGGGAGCCCAAGTGACCGGAAGAGTCTGTTGCTCTGCTTACATCAAAATATTTCTGTGTCATTGAACCATGTCAAGACTGTAATAATTATTATACTTGTTTTTGTAGCTCTTAATCTTGGTAAAAGACTGCAATATAGTAGATGATATTGTGAAAAACGGAATTTAATTTCCTTGAATTGCAGATTATTGTTGGTCGACTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E354954" ref_strand="+" ref_description="SGN-E354954 [cTOS-19-I24]">
      <seq>acgcactcccagcagtagccccaaaagacgcactccaagcagaagcccaagccggagtaggagccgtagccaaagtttgtccaggtaagattgctggaatcatcagtgattgagggtgccatcatgctgtgtttgagcagcctggtccacagttgggagcccaagtgaccggaagagtctgttgctctgcttacatcaaaatatttctgtgtcattgaaccatgtcaagactgtaataattattatacttgtttttgtagctcttaatcttggtaaaagactgcaatatagtagatgatattgtgaaaaacggaatttaatttccttgaattgcagattattgttggtcgactgaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="63136" stop="62103"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62836" g_stop="62753" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62752" i_stop="62674" i_length="79">
            <donor d_prob="0.906" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62673" g_stop="62401" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="357" r_length="273" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="358" polyA_stop="373"/>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E354954" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>357</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354954" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62836" e_stop="62753"/>
          <exon e_start="62673" e_stop="62401"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGCACTCCCAGCAGTAGCCCCAAAAGACGCACTCCAAGCAGAAGCCCAAGCCGGAGTAGGAGCCGTAGCCAAAGTTTGTCCAGGTCTTACTTCTGTGGCTTGTCGTATATCTTTCAATGTTTGACCGTTTCGTTAATTTTTTCTCCTCGCCTCTTTTTATAGGTAAGATTGCTGGAATCATCAGTGATTGAGGGTGCCATCATGCTGTGTTTGAGCAGCCTGGTCCACAGTTGGGAGCCCAAGTGACCGGAAGAGTCTGTTGCTCTGCTTACATCAAAATATTTCTGTGTCATTGAACCATGTCAAGACTGTAATAATTATTATACTTGTTTTTGTAGCTCTTAATCTTGGTAAAAGACTGCAATATAGTAGATGATATTGTGAAAAACGGAATTTAATTTCCTTGAATTGCAGATTATTGTTGGTCGACTGATG</genome_strand>
        <mrna_strand>ACGCACTCCCAGCAGTAGCCCCAAAAGACGCACTCCAAGCAGAAGCCCAAGCCGGAGTAGGAGCCGTAGCCAAAGTTTGTCCAG...............................................................................GTAAGATTGCTGGAATCATCAGTGATTGAGGGTGCCATCATGCTGTGTTTGAGCAGCCTGGTCCACAGTTGGGAGCCCAAGTGACCGGAAGAGTCTGTTGCTCTGCTTACATCAAAATATTTCTGTGTCATTGAACCATGTCAAGACTGTAATAATTATTATACTTGTTTTTGTAGCTCTTAATCTTGGTAAAAGACTGCAATATAGTAGATGATATTGTGAAAAACGGAATTTAATTTCCTTGAATTGCAGATTATTGTTGGTCGACTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E221335" ref_strand="+" ref_description="SGN-E221335 [cLEL-22-A12](-)">
      <seq>gtagccccaaaagacgcactccaagcagaagcccaagccggagtaggagccgtagccaaagtttgtccaggtaagattgctggaatcatcagtgattgagggtgccatcatgctgtgtttgagcagcctggtccacagttgggagcccaagtgaccggaagagtctgttgctctgcttacatcaaaatatttctgtgtcattgaaccatgtcaagactgtaataattattatacttgtttttgtagctcttaatcttggtaaaagactgcaatatagtagatgatattgtgaaaaacggaatttaatttccttgaattgcagattattgttggtcgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="63122" stop="62107"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62822" g_stop="62753" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62752" i_stop="62674" i_length="79">
            <donor d_prob="0.906" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62673" g_stop="62401" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="343" r_length="273" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="344" polyA_stop="354"/>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E221335" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>343</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E221335" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62822" e_stop="62753"/>
          <exon e_start="62673" e_stop="62401"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGCCCCAAAAGACGCACTCCAAGCAGAAGCCCAAGCCGGAGTAGGAGCCGTAGCCAAAGTTTGTCCAGGTCTTACTTCTGTGGCTTGTCGTATATCTTTCAATGTTTGACCGTTTCGTTAATTTTTTCTCCTCGCCTCTTTTTATAGGTAAGATTGCTGGAATCATCAGTGATTGAGGGTGCCATCATGCTGTGTTTGAGCAGCCTGGTCCACAGTTGGGAGCCCAAGTGACCGGAAGAGTCTGTTGCTCTGCTTACATCAAAATATTTCTGTGTCATTGAACCATGTCAAGACTGTAATAATTATTATACTTGTTTTTGTAGCTCTTAATCTTGGTAAAAGACTGCAATATAGTAGATGATATTGTGAAAAACGGAATTTAATTTCCTTGAATTGCAGATTATTGTTGGTCGACTGATG</genome_strand>
        <mrna_strand>GTAGCCCCAAAAGACGCACTCCAAGCAGAAGCCCAAGCCGGAGTAGGAGCCGTAGCCAAAGTTTGTCCAG...............................................................................GTAAGATTGCTGGAATCATCAGTGATTGAGGGTGCCATCATGCTGTGTTTGAGCAGCCTGGTCCACAGTTGGGAGCCCAAGTGACCGGAAGAGTCTGTTGCTCTGCTTACATCAAAATATTTCTGTGTCATTGAACCATGTCAAGACTGTAATAATTATTATACTTGTTTTTGTAGCTCTTAATCTTGGTAAAAGACTGCAATATAGTAGATGATATTGTGAAAAACGGAATTTAATTTCCTTGAATTGCAGATTATTGTTGGTCGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E746296" ref_strand="+" ref_description="SGN-E746296 [GI|47104758]">
      <seq>ctcgatcttcccaggaacaatgagtcggtcgagtaggacactttatgttggcaatcttcctggtgatgttcgtgagcgtgaagtggaagatctcttttacaagtatggaccgattgcacatattgagctgaaaattccaccaagaccccctggttatgcttttgttgagtttgaagaggctcgtgatgctgaagatgctattcgtggtcgtgatggctatgattttgatgggcaccgtctgcgggttgagcttgcacatggcgggcgtggtaactcatcatcaaatgatcgttatggtggtggcggtggcggccgtggtcagcgtggtggaggagtgtcaagacgttcagattatcgagtgttagttacaggattaccccattcagcatcgtggcaggatctcaaggatcacatgcgccgtgctggggatgtttgtttctcccaagttttccgtgacgggagtggaaccactggtataattgattatacaaactatgatgacatgaaatatgctatcaaaaagcttgatgactctgagtttcgaaatgccttttctcgtgcgacaattcgagttaaagaatatgaccgcagtcgaagtcgcagccgcagtcgcagtcgctcttactccagagggaagagtgttagtcgaagccgaagccgtagccgaagtagaagccgaagcaagagcaaaagcaaatctcctaaagttaagtcttcaaagcgctcaagatctcgttcaaggtctgtgtcttctcagtctcgttctgggtcaaaaggacgtcctgtctcaagattttggatatgtgcggcggtttgtggatttgcatattaggatcttgagtggataatggtcttgcctgcaactctttttgttgtggagattgggatcatgaagatcacggattctatggtggagctggactggggaaccaactgccacctgaatttggatcaccacctattttttggtagaagcatgttctaacaaagcgaaataaagactagttcattcttttggtatcctgctaattggtctctttgactgctcgaatttaaaatattacatagtctcaatggtgtaacttgcattgttttatacttgccatattttccactctggattctgccaaattgctactttcattatggtcatgctgaggtggaagtgaaatcaaagcagttgtggaggaaacttgttaagtggcgggactgggatattaaattaagttctttctggaaattttgcagatctccatcaaggtccagatcaccagcaccagctcgttcaaaacaattaagtgaaagtcccaaaagacgcactcccagcagtagccccaaaagacgcactccaagcagaagcccaagccggagtaggagccgtagccaaagtttgtccaggtaagattgctggaatcatcagtgattgagggtgccatcatgctgtgtttgagcagcctggtccacagttgggagcccaagtgaccggaagagtctgttgctctgcttacatcaaaatatttctgtgtcattgaaccatgtcaagactgtaataattattatacttgtttttgtagctcttaatcttggtaaaagactgcaatatagtagatgatattgtgaaaaacggaatttaatttccttgaattgcagattattgttggtaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="68459" stop="62110"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68151" g_stop="68063" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="103" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68062" i_stop="67796" i_length="267">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67795" g_stop="67730" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="169" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67729" i_stop="67628" i_length="102">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67627" g_stop="67553" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="244" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67552" i_stop="67458" i_length="95">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67457" g_stop="67343" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="359" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67342" i_stop="67258" i_length="85">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67257" g_stop="67211" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="406" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67210" i_stop="67096" i_length="115">
            <donor d_prob="0.611" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67095" g_stop="67038" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="464" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="67037" i_stop="65269" i_length="1769">
            <donor d_prob="0.732" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="65268" g_stop="65219" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="514" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="65218" i_stop="65092" i_length="127">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="65091" g_stop="65035" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="571" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="65034" i_stop="64952" i_length="83">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.791" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="64951" g_stop="64830" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="693" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="64829" i_stop="64748" i_length="82">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.433" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="64747" g_stop="64649" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="694" r_stop="792" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="64648" i_stop="63618" i_length="1031">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.846" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="63617" g_stop="63530" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="793" r_stop="880" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="63529" i_stop="63444" i_length="86">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="63443" g_stop="63042" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="881" r_stop="1282" r_length="402" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="63041" i_stop="62869" i_length="173">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="62868" g_stop="62753" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1283" r_stop="1398" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="62752" i_stop="62674" i_length="79">
            <donor d_prob="0.906" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="62673" g_stop="62412" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="1399" r_stop="1660" r_length="262" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1663" polyA_stop="1677"/>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E746296" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1646</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746296" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68151" e_stop="68063"/>
          <exon e_start="67795" e_stop="67730"/>
          <exon e_start="67627" e_stop="67553"/>
          <exon e_start="67457" e_stop="67343"/>
          <exon e_start="67257" e_stop="67211"/>
          <exon e_start="67095" e_stop="67038"/>
          <exon e_start="65268" e_stop="65219"/>
          <exon e_start="65091" e_stop="65035"/>
          <exon e_start="64951" e_stop="64830"/>
          <exon e_start="64747" e_stop="64649"/>
          <exon e_start="63617" e_stop="63530"/>
          <exon e_start="63443" e_stop="63042"/>
          <exon e_start="62868" e_stop="62753"/>
          <exon e_start="62673" e_stop="62412"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACAATGAGTCGGTCGAGTAGGACACTTTATGTTGGCAATCTTCCTGGTGATGTTCGTGAGCGTGAAGTGGAAGATCTCTTTTACAAGGTGCTTATACTCTAGATGGCTCCCTACATTCTTTGATATCATTTCATAATGCTTATAAACAAAAAGAAAAATGATTAGAAGTAAAATTATGTTTTTGAGTGAAATGGGTACAAATAGAGTGGTATGGATATAGGGAATTCATTATCGACAAACTCAAATTAAGGAGTATTTCTTTTGTAAGGCTTGTGCACATGTTTAATTGTTCTGTCACAATTTAACAGATTTTAACTGTTAGAAACTTATAAACAATTTGATGTGTGAGTGCAGTATGGACCGATTGCACATATTGAGCTGAAAATTCCACCAAGACCCCCTGGTTATGCTTTTGTTGAGGTGAGTTTGAGCTGCCTTGGTTCTGATGGATTTCATTAGATCAGCCTGCTATGCGCCTTTTAAAGCTATTCTGACCTTTATATTGGCCAAAAACTATAACAGTTTGAAGAGGCTCGTGATGCTGAAGATGCTATTCGTGGTCGTGATGGCTATGATTTTGATGGGCACCGTCTGCGGGTCGGTCAAACTTATAGTTAGCGTATAGTTTACACAAGGTTACTAGTTTTTGCCTTGTTGGATGTTGAATCTATTACAATTGCTCATACTGGCAGGTTGAGCTTGCACATGGCGGGCGTGGTAACTCATCATCAAATGATCGTTATGGTGGTGGCGGTGGCGGCCGTGGTCAGCGTGGTGGAGGAGTGTCAAGACGTTCAGATTATCGAGGTGTGTCTTATGGGTTATGTGCTTTCTACATTGGAATACATGTTATATCTTTTCTTATGTTCTGATATCTTTTGTTGTATTTCAGTGTTAGTTACAGGATTACCCCATTCAGCATCGTGGCAGGATCTCAAGGTGAGTCGGTGTCTTTGAGTTGTGAATCATAGGGACTTACCAAGAAAGTGATCCTCCTTTCCCTCAAAATTATTCTGTAATTTCTGAGTATTGTTAACTTTTATTTCTTATGTAGGATCACATGCGCCGTGCTGGGGATGTTTGTTTCTCCCAAGTTTTCCGTGACGGGAGTGGTAAGATTTAAACAGCTAATGGCAGATCTACTTTTTCTCTTTGAACTGGTATAATGGTTTAACTGTCAAGCACACGGAACTCCTCCATGTGGAATGGCAACCTACAATGATACACCAAGCAATAAGTCTTTGATGTGAGCTTACAATGGTACTCACTAATTGTACTGATGATTTGGAGAAAGACCTGTATACAAACTGTATATCGAAAGATGGAGAATTCTACTGTAACACACTATTCCTCTTCTTGCTCATCGTGGTTGACCTGTCATAGGAATAGGTTAAGGATACTTTTCTTTATATCATAGTGTAAATTAATGAGTTTATAATCAAGTATTATATTAAGGGTGCAAGTCTGTCATTGTTAATTATTACTGTCATTCTTTTTATATTTAGAGCTTTGGTAATAACTGTGGGTTCATACCTGGGATATCTGATAAATTTGGAAAAATGCATAGGATCTATGACTCATAATTTGGGTTTTCAGTATAAGCTGATAAGTCTTTCTTTGTCTAGAAAAATGTTATATTGAAGGAAAAATAATATAGGAGAGATCATCTCTTCAGAAAATGTAGTGGAAATAATCATCGACATATTGATAACAATATTACTTGATGAAAACAGGATAAGGTCTTGACAAACTGGAGGGGAAAATATGCAGGTGGAGCAAAAAATTGGGAGGAAAGATGGAAAACTAAATATAAAAGAAACACTGAGTAGGAAAGAAGCACAAGTTAGATGTGTTATGGTTCCTCGAGGGTAGGGTGGGGTGGGGAGACCAACGTTGCTGCAAGCTTGAGGTCGGGGTAGGTCAAAAACCTAGAGGTGTTGGGGCATCATTGGTTGGTGGCTGGGTGAGGGCAAGATAAGTTCTGCTCTCAGGAAGAAATGGTGAAAAAGATGAAGAGAGATGTGTATTTTTGTTGTCTTCCCATCTAAGAATGTCTCGCCCTTGCCCATCTATTGTCCTCTTTTGCTCTTCTAATACAATTTGTTAATTTGGATTATGATCCTGTTATTTATCCCATTTTTTTCTGAGGACTATCATCCCTTGAGACAATTTAAAAGCTGGTTATCGACTGTGCTGCCTAATGTTTGGTGGTTGGTTGGATAAATTTGTTTAGACTAATCTGATGCACCTGATGACCCCATTAACTTGTATGATGTTTTGGATTTCTTTCCCCGTTTCTTTTTGAATTTTATTTTGGTACAACTGTTTGAAGTCTTTAACTAGATGCTAACCCAATGTGCCAAAATGTTCCCACGCTCTATGTTGATGACTGCATATGCAATTTTCTCCTCTATGATTCATTTCTACGTTTTCTGATCACGTGCAGAACTTGTCATATTGGAGGGTCCACTTTTGTTTTTTAAGGGAATGAAAATTAAGAGGAAGCAAATGATATTTGATGTAGGCCGAGAAAACTTGTTTTTTGAATCTTTTTATTGATATTTTTTGATTCTTTTTTGGTTTCAGTAAACATTTTGGTGCGATTTGCAAAAGACAACTTTTGTTTTAAGCAACAGTTGTTTTTAGTTTCCTGTAAAACTTCACCATAAATTTTTCTAATTCAAGTTTACCATAAACTATTGTGATCTAACTATTCCTAGAGTTTTCTGAATCCATAATGGCACACAAAATCGCTCTTTGCTTTAACTTGTTAGTGCACAATGCTTATTTTTACCCTGTAGGAAGCATCTTGATCTTCATATTACTGTCATTTCTGGTCCACAAGTTATTCTGATATCAACAAATTTGCTTGGACTTTCAGGAACCACTGGTATAATTGATTATACAAACTATGATGACATGAAATATGCTGTAAGCCATCTTCTCTTTTCTCCTTCCCTTTAGTTGGGTTTCCTTCACCTTGATGCTGTTGACAATATTTGATTTTTCCTTTATACAACTAAGAGGTGCAGCTAATATTATCCTTTCATGTGTATAGATCAAAAAGCTTGATGACTCTGAGTTTCGAAATGCCTTTTCTCGTGCGACAATTCGAGTATGACACAAACAATTTTCAATTTCTTCAATTATCGTGTTGATGCCGTCATTTGCTATTCTCAAAACCTCCACCTTCTGTAGGTTAAAGAATATGACCGCAGTCGAAGTCGCAGCCGCAGTCGCAGTCGCTCTTACTCCAGAGGGAAGAGTGTTAGTCGAAGCCGAAGCCGTAGCCGAAGTAGAAGCCGAAGCAAGAGCAAAAGGTCTAACACATTACACATATATGTCTGGACTAGTGGTTTTACTTTAATGCAAATAGGGCCTTATTAATATTTGTCTTAGCAGCAAATCTCCTAAAGTTAAGTCTTCAAAGCGCTCAAGATCTCGTTCAAGGTCTGTGTCTTCTCAGTCTCGTTCTGGGTCAAAAGGACGTCCTGTCTCAAGGTAATATTCTGCTTTCTCTTTCTGTTTTTGTTTCGGGATGGGTATAAAAGCATTACATAGTACAAGGTTAATATTTGCATAAACTGCAAATCTTTCATTCTTTATTATCTTATTAGAGTTCTTCAATTTCTCAAGTTGTTCTTCACACTCAAAGTATTGTTGATTTAAGATCTTTAAATCTAAAATGCTCTTGCAGTTGATTACTTTGCCTTTTATCTTCTATGTTATTGTTAGTTTGATGTGCTCACTGCAAAGTTCACATCAAAATGGTGTAGACTCCTGGGTGCTTTAGTCTTCTTTGTTTAACTTGTCCTTGATGCTTTCCCCTTGGTTCTTTCTAAACAATATAGCAATGAGAAGCTATTAGTCTCATATATCATGCATAAAACTCCAAATCCAATCTTATTTGTTTTTTATTATCTTGTCCCTCTAACACAATCTTGTGGTAATTTGTCATATGTGGGGGTACAACGGATTTATGGTAAGTTGTAGAATACAATTTTCCAAAGGTTGCATTTTCTGGCGGCAATCTAGTTGGTAATGTGTAGTTCTGCATACTCTAGTGGGACAACGTGTAGTTACATTTATGTTATTTTCTTCTGTTTCAGGACGGATTTTAAGGGGTTTAGAACTTGCAATGACGTTATCAAACCATTAGAATCAACCAAATGATTGAAAACTATGGTTTCTCACTTTTTTTCTCCATTTTTTCCCCCTATGAAACAAGATTTCATATTCATTTGTTTCCTGCTATTTCAGGATTTTCCAACTATGTTTGCTGATCAATGTGTAACCATTTAGTAAAGACTGGTCATTAGATAGGTTCATGTCTGTTGAAACAAAATTAGAAATTGGAAAGGTTTAGGTCTGAGCAATACAGAAGTAAAGTTTAGTGTTTGAAGGGGAGACTTGGTTCATTTACTTAAGTCATTTTGGAACTGTATTCTAGGGGAAACATACTGCCTTATCAAGGTGTCGTCTTTTATCGTTTCTTTTATAAGTATGAAAAGTCACCTTGTTTGTTTTTCTAGATTTTGGATATGTGCGGCGGTTTGTGGATTTGCATATTAGGATCTTGAGTGGATAATGGTCTTGCCTGCAACTCTTTTTGTTGTGGAGGTACGATGTTTTCTAGATGGCAGCTTTGGGTCTTTTTGTGATGTCTCTCTTCTAATGAGCATCGTGAAATGTTCCATGGGTGCTAGATTGGGATCATGAAGATCACGGATTCTATGGTGGAGCTGGACTGGGGAACCAACTGCCACCTGAATTTGGATCACCACCTATTTTTTGGTAGAAGCATGTTCTAACAAAGCGAAATAAAGACTAGTTCATTCTTTTGGTATCCTGCTAATTGGTCTCTTTGACTGCTCGAATTTAAAATATTACATAGTCTCAATGGTGTAACTTGCATTGTTTTATACTTGCCATATTTTCCACTCTGGATTCTGCCAAATTGCTACTTTCATTATGGTCATGCTGAGGTGGAAGTGAAATCAAAGCAGTTGTGGAGGAAACTTGTTAAGTGGCGGGACTGGGATATTAAATTAAGTTCTTTCTGGAAATTTTGCAGATCTCCATCAAGGTCCAGATCACCAGCACCAGCTGTAAGTCAAATCTACATGTTTTAAAGTGAACGGAATAACCCAAAATTCAAATATATTGGGATCATCCGTCTTGTCTGTCTTTTTTTTGTGCTTACCTGGCCTTTTCAAAGTACATTCTCTCTTTTCTCTGTCTACATAATTATTGCTTTGTATTATGACTGGGTTAATTACAGCGTTCAAAACAATTAAGTGAAAGTCCCAAAAGACGCACTCCCAGCAGTAGCCCCAAAAGACGCACTCCAAGCAGAAGCCCAAGCCGGAGTAGGAGCCGTAGCCAAAGTTTGTCCAGGTCTTACTTCTGTGGCTTGTCGTATATCTTTCAATGTTTGACCGTTTCGTTAATTTTTTCTCCTCGCCTCTTTTTATAGGTAAGATTGCTGGAATCATCAGTGATTGAGGGTGCCATCATGCTGTGTTTGAGCAGCCTGGTCCACAGTTGGGAGCCCAAGTGACCGGAAGAGTCTGTTGCTCTGCTTACATCAAAATATTTCTGTGTCATTGAACCATGTCAAGACTGTAATAATTATTATACTTGTTTTTGTAGCTCTTAATCTTGGTAAAAGACTGCAATATAGTAGATGATATTGTGAAAAACGGAATTTAATTTCCTTGAATTGCAGATTATTGTTG</genome_strand>
        <mrna_strand>GAACAATGAGTCGGTCGAGTAGGACACTTTATGTTGGCAATCTTCCTGGTGATGTTCGTGAGCGTGAAGTGGAAGATCTCTTTTACAAG...........................................................................................................................................................................................................................................................................TATGGACCGATTGCACATATTGAGCTGAAAATTCCACCAAGACCCCCTGGTTATGCTTTTGTTGAG......................................................................................................TTTGAAGAGGCTCGTGATGCTGAAGATGCTATTCGTGGTCGTGATGGCTATGATTTTGATGGGCACCGTCTGCGG...............................................................................................GTTGAGCTTGCACATGGCGGGCGTGGTAACTCATCATCAAATGATCGTTATGGTGGTGGCGGTGGCGGCCGTGGTCAGCGTGGTGGAGGAGTGTCAAGACGTTCAGATTATCGAG.....................................................................................TGTTAGTTACAGGATTACCCCATTCAGCATCGTGGCAGGATCTCAAG...................................................................................................................GATCACATGCGCCGTGCTGGGGATGTTTGTTTCTCCCAAGTTTTCCGTGACGGGAGTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACCACTGGTATAATTGATTATACAAACTATGATGACATGAAATATGCT...............................................................................................................................ATCAAAAAGCTTGATGACTCTGAGTTTCGAAATGCCTTTTCTCGTGCGACAATTCGA...................................................................................GTTAAAGAATATGACCGCAGTCGAAGTCGCAGCCGCAGTCGCAGTCGCTCTTACTCCAGAGGGAAGAGTGTTAGTCGAAGCCGAAGCCGTAGCCGAAGTAGAAGCCGAAGCAAGAGCAAAAG..................................................................................CAAATCTCCTAAAGTTAAGTCTTCAAAGCGCTCAAGATCTCGTTCAAGGTCTGTGTCTTCTCAGTCTCGTTCTGGGTCAAAAGGACGTCCTGTCTCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTGGATATGTGCGGCGGTTTGTGGATTTGCATATTAGGATCTTGAGTGGATAATGGTCTTGCCTGCAACTCTTTTTGTTGTGGAG......................................................................................ATTGGGATCATGAAGATCACGGATTCTATGGTGGAGCTGGACTGGGGAACCAACTGCCACCTGAATTTGGATCACCACCTATTTTTTGGTAGAAGCATGTTCTAACAAAGCGAAATAAAGACTAGTTCATTCTTTTGGTATCCTGCTAATTGGTCTCTTTGACTGCTCGAATTTAAAATATTACATAGTCTCAATGGTGTAACTTGCATTGTTTTATACTTGCCATATTTTCCACTCTGGATTCTGCCAAATTGCTACTTTCATTATGGTCATGCTGAGGTGGAAGTGAAATCAAAGCAGTTGTGGAGGAAACTTGTTAAGTGGCGGGACTGGGATATTAAATTAAGTTCTTTCTGGAAATTTTGCAGATCTCCATCAAGGTCCAGATCACCAGCACCAGCT.............................................................................................................................................................................CGTTCAAAACAATTAAGTGAAAGTCCCAAAAGACGCACTCCCAGCAGTAGCCCCAAAAGACGCACTCCAAGCAGAAGCCCAAGCCGGAGTAGGAGCCGTAGCCAAAGTTTGTCCAG...............................................................................GTAAGATTGCTGGAATCATCAGTGATTGAGGGTGCCATCATGCTGTGTTTGAGCAGCCTGGTCCACAGTTGGGAGCCCAAGTGACCGGAAGAGTCTGTTGCTCTGCTTACATCAAAATATTTCTGTGTCATTGAACCATGTCAAGACTGTAATAATTATTATACTTGTTTTTGTAGCTCTTAATCTTGGTAAAAGACTGCAATATAGTAGATGATATTGTGAAAAACGGAATTTAATTTCCTTGAATTGCAGATTATTGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E217961" ref_strand="+" ref_description="SGN-E217961 [cLEL-23-O19](-)">
      <seq>aattaagtgaaagtcccaaaagacgcactcccagcagtagccccaaaagacgcactccaagcagaagcccaagccggagtaggagccgtagccaaagtttgtccaggtaagattgctggaatcatcagtgattgagggtgccatcatgctgtgtttgagcagcctggtccacagttgggagcccaagtgaccggaagagtctgttgctctgcttacatcaaaatatttctgtgtcattgaaccatgtcaagactgtaataattattatacttgtttttgtagctcttaatcttggtaaaagactgcaatatagtagatgatattgtgaaaaacggcatttaatttccttgaattgaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="63158" stop="62121"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62858" g_stop="62753" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62752" i_stop="62674" i_length="79">
            <donor d_prob="0.906" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62673" g_stop="62422" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="358" r_length="252" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="359" polyA_stop="374"/>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E217961" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>358</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217961" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62858" e_stop="62753"/>
          <exon e_start="62673" e_stop="62422"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTAAGTGAAAGTCCCAAAAGACGCACTCCCAGCAGTAGCCCCAAAAGACGCACTCCAAGCAGAAGCCCAAGCCGGAGTAGGAGCCGTAGCCAAAGTTTGTCCAGGTCTTACTTCTGTGGCTTGTCGTATATCTTTCAATGTTTGACCGTTTCGTTAATTTTTTCTCCTCGCCTCTTTTTATAGGTAAGATTGCTGGAATCATCAGTGATTGAGGGTGCCATCATGCTGTGTTTGAGCAGCCTGGTCCACAGTTGGGAGCCCAAGTGACCGGAAGAGTCTGTTGCTCTGCTTACATCAAAATATTTCTGTGTCATTGAACCATGTCAAGACTGTAATAATTATTATACTTGTTTTTGTAGCTCTTAATCTTGGTAAAAGACTGCAATATAGTAGATGATATTGTGAAAAACGGAATTTAATTTCCTTGAATTGCAG</genome_strand>
        <mrna_strand>AATTAAGTGAAAGTCCCAAAAGACGCACTCCCAGCAGTAGCCCCAAAAGACGCACTCCAAGCAGAAGCCCAAGCCGGAGTAGGAGCCGTAGCCAAAGTTTGTCCAG...............................................................................GTAAGATTGCTGGAATCATCAGTGATTGAGGGTGCCATCATGCTGTGTTTGAGCAGCCTGGTCCACAGTTGGGAGCCCAAGTGACCGGAAGAGTCTGTTGCTCTGCTTACATCAAAATATTTCTGTGTCATTGAACCATGTCAAGACTGTAATAATTATTATACTTGTTTTTGTAGCTCTTAATCTTGGTAAAAGACTGCAATATAGTAGATGATATTGTGAAAAACGGCATTTAATTTCCTTGAATTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E218181" ref_strand="+" ref_description="SGN-E218181 [cLEL-23-O19](-)">
      <seq>agtagccccaaaagacgccctccaagcagaagcccaagccggagtaggagccgtagccaaagtttgtccaggtaagattgctggaatcatcagtgattgagggtgccatcatgctgtgtttgagcagcctggtccacagttgggagcccaagtgaccggaagagtctgttgctctgcttacatcaaaatatttctgtgtcattgaaccatgtcaagactgtaataattattatacttgtttttgtagctcttaatcttggtaaaagactgcaatatagtagatgatattgtgaaaaacggaatttaatttccttgaattgaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="63123" stop="62121"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62823" g_stop="62753" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62752" i_stop="62674" i_length="79">
            <donor d_prob="0.906" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62673" g_stop="62422" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="323" r_length="252" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="324" polyA_stop="339"/>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E218181" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>323</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E218181" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62823" e_stop="62753"/>
          <exon e_start="62673" e_stop="62422"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAGCCCCAAAAGACGCACTCCAAGCAGAAGCCCAAGCCGGAGTAGGAGCCGTAGCCAAAGTTTGTCCAGGTCTTACTTCTGTGGCTTGTCGTATATCTTTCAATGTTTGACCGTTTCGTTAATTTTTTCTCCTCGCCTCTTTTTATAGGTAAGATTGCTGGAATCATCAGTGATTGAGGGTGCCATCATGCTGTGTTTGAGCAGCCTGGTCCACAGTTGGGAGCCCAAGTGACCGGAAGAGTCTGTTGCTCTGCTTACATCAAAATATTTCTGTGTCATTGAACCATGTCAAGACTGTAATAATTATTATACTTGTTTTTGTAGCTCTTAATCTTGGTAAAAGACTGCAATATAGTAGATGATATTGTGAAAAACGGAATTTAATTTCCTTGAATTGCAG</genome_strand>
        <mrna_strand>AGTAGCCCCAAAAGACGCCCTCCAAGCAGAAGCCCAAGCCGGAGTAGGAGCCGTAGCCAAAGTTTGTCCAG...............................................................................GTAAGATTGCTGGAATCATCAGTGATTGAGGGTGCCATCATGCTGTGTTTGAGCAGCCTGGTCCACAGTTGGGAGCCCAAGTGACCGGAAGAGTCTGTTGCTCTGCTTACATCAAAATATTTCTGTGTCATTGAACCATGTCAAGACTGTAATAATTATTATACTTGTTTTTGTAGCTCTTAATCTTGGTAAAAGACTGCAATATAGTAGATGATATTGTGAAAAACGGAATTTAATTTCCTTGAATTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E613784" ref_strand="+" ref_description="SGN-E613784 [63563]">
      <seq>attcagcatcgtggcaggatctcaaggatcacatgcgtcgtgctggggatgtttgtttctcccaagttttccgtgatgggagtggcaccactggtataattgattatacaaactatgatgacatgaaatatgctatcaaaaagcttgatgactctgagtttcggaatgccttttctcgtgcgacaattcgagttaaggaatatgaccgcagtcgaagccgcagccgcagccgcagtcggagccgttcttactccaaaggaaagagtgttagtcgaagccgtagccgtagccgtagccgaagcaaaagtcgtagcaagagcaaaagcaaatctcctaaagttaagtcttcaaagcgctcaagatctcgttcaaggtctgtgtcttctcggtctcgttctgggtcaaaaggacgtcctgtctcaagatctccatcaaggtccagatcgccagcaccagctcgttcaaaaccgttgagcaaaagtcccaaaagacgcactcccagcagtagccccaaaaggcgcactccaagcagaagcccaagccggagtaggagccgtagccggagtttgtccaggtaagattgttggagtcatcagtgattgaggggtgccatcatactgtgtttgagcagcacggtccacagttgggagtctaagggcccggaggagtctgttgctctgcttacatcaaaatatttctgtgtcattgaactatgtcaagactgtaataaattattatacttaatttggtatctcttaagacttggtaaaaaggactgcaatatagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="67536" stop="62191"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67236" g_stop="67211" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67210" i_stop="67096" i_length="115">
            <donor d_prob="0.611" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67095" g_stop="67038" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="84" r_length="58" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67037" i_stop="65269" i_length="1769">
            <donor d_prob="0.732" d_score="0.96"/>
            <acceptor a_prob="0.949" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65268" g_stop="65219" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="134" r_length="50" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65218" i_stop="65092" i_length="127">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.963" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65091" g_stop="65035" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="191" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="65034" i_stop="64952" i_length="83">
            <donor d_prob="0.978" d_score="0.98"/>
            <acceptor a_prob="0.791" a_score="0.81"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64951" g_stop="64830" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="319" r_length="128" r_score="0.770"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="64829" i_stop="64754" i_length="76">
            <donor d_prob="0.982" d_score="0.78"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="64753" g_stop="64649" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="424" r_length="105" r_score="0.962"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="64648" i_stop="63076" i_length="1573">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.961" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="63075" g_stop="63042" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="458" r_length="34" r_score="0.971"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="63041" i_stop="62869" i_length="173">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="62868" g_stop="62753" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="574" r_length="116" r_score="0.931"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="62752" i_stop="62674" i_length="79">
            <donor d_prob="0.906" d_score="0.96"/>
            <acceptor a_prob="0.964" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="62673" g_stop="62465" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="788" r_length="214" r_score="0.876"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E613784" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>777</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E613784" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67236" e_stop="67211"/>
          <exon e_start="67095" e_stop="67038"/>
          <exon e_start="65268" e_stop="65219"/>
          <exon e_start="65091" e_stop="65035"/>
          <exon e_start="64951" e_stop="64830"/>
          <exon e_start="64753" e_stop="64649"/>
          <exon e_start="63075" e_stop="63042"/>
          <exon e_start="62868" e_stop="62753"/>
          <exon e_start="62673" e_stop="62465"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCAGCATCGTGGCAGGATCTCAAGGTGAGTCGGTGTCTTTGAGTTGTGAATCATAGGGACTTACCAAGAAAGTGATCCTCCTTTCCCTCAAAATTATTCTGTAATTTCTGAGTATTGTTAACTTTTATTTCTTATGTAGGATCACATGCGCCGTGCTGGGGATGTTTGTTTCTCCCAAGTTTTCCGTGACGGGAGTGGTAAGATTTAAACAGCTAATGGCAGATCTACTTTTTCTCTTTGAACTGGTATAATGGTTTAACTGTCAAGCACACGGAACTCCTCCATGTGGAATGGCAACCTACAATGATACACCAAGCAATAAGTCTTTGATGTGAGCTTACAATGGTACTCACTAATTGTACTGATGATTTGGAGAAAGACCTGTATACAAACTGTATATCGAAAGATGGAGAATTCTACTGTAACACACTATTCCTCTTCTTGCTCATCGTGGTTGACCTGTCATAGGAATAGGTTAAGGATACTTTTCTTTATATCATAGTGTAAATTAATGAGTTTATAATCAAGTATTATATTAAGGGTGCAAGTCTGTCATTGTTAATTATTACTGTCATTCTTTTTATATTTAGAGCTTTGGTAATAACTGTGGGTTCATACCTGGGATATCTGATAAATTTGGAAAAATGCATAGGATCTATGACTCATAATTTGGGTTTTCAGTATAAGCTGATAAGTCTTTCTTTGTCTAGAAAAATGTTATATTGAAGGAAAAATAATATAGGAGAGATCATCTCTTCAGAAAATGTAGTGGAAATAATCATCGACATATTGATAACAATATTACTTGATGAAAACAGGATAAGGTCTTGACAAACTGGAGGGGAAAATATGCAGGTGGAGCAAAAAATTGGGAGGAAAGATGGAAAACTAAATATAAAAGAAACACTGAGTAGGAAAGAAGCACAAGTTAGATGTGTTATGGTTCCTCGAGGGTAGGGTGGGGTGGGGAGACCAACGTTGCTGCAAGCTTGAGGTCGGGGTAGGTCAAAAACCTAGAGGTGTTGGGGCATCATTGGTTGGTGGCTGGGTGAGGGCAAGATAAGTTCTGCTCTCAGGAAGAAATGGTGAAAAAGATGAAGAGAGATGTGTATTTTTGTTGTCTTCCCATCTAAGAATGTCTCGCCCTTGCCCATCTATTGTCCTCTTTTGCTCTTCTAATACAATTTGTTAATTTGGATTATGATCCTGTTATTTATCCCATTTTTTTCTGAGGACTATCATCCCTTGAGACAATTTAAAAGCTGGTTATCGACTGTGCTGCCTAATGTTTGGTGGTTGGTTGGATAAATTTGTTTAGACTAATCTGATGCACCTGATGACCCCATTAACTTGTATGATGTTTTGGATTTCTTTCCCCGTTTCTTTTTGAATTTTATTTTGGTACAACTGTTTGAAGTCTTTAACTAGATGCTAACCCAATGTGCCAAAATGTTCCCACGCTCTATGTTGATGACTGCATATGCAATTTTCTCCTCTATGATTCATTTCTACGTTTTCTGATCACGTGCAGAACTTGTCATATTGGAGGGTCCACTTTTGTTTTTTAAGGGAATGAAAATTAAGAGGAAGCAAATGATATTTGATGTAGGCCGAGAAAACTTGTTTTTTGAATCTTTTTATTGATATTTTTTGATTCTTTTTTGGTTTCAGTAAACATTTTGGTGCGATTTGCAAAAGACAACTTTTGTTTTAAGCAACAGTTGTTTTTAGTTTCCTGTAAAACTTCACCATAAATTTTTCTAATTCAAGTTTACCATAAACTATTGTGATCTAACTATTCCTAGAGTTTTCTGAATCCATAATGGCACACAAAATCGCTCTTTGCTTTAACTTGTTAGTGCACAATGCTTATTTTTACCCTGTAGGAAGCATCTTGATCTTCATATTACTGTCATTTCTGGTCCACAAGTTATTCTGATATCAACAAATTTGCTTGGACTTTCAGGAACCACTGGTATAATTGATTATACAAACTATGATGACATGAAATATGCTGTAAGCCATCTTCTCTTTTCTCCTTCCCTTTAGTTGGGTTTCCTTCACCTTGATGCTGTTGACAATATTTGATTTTTCCTTTATACAACTAAGAGGTGCAGCTAATATTATCCTTTCATGTGTATAGATCAAAAAGCTTGATGACTCTGAGTTTCGAAATGCCTTTTCTCGTGCGACAATTCGAGTATGACACAAACAATTTTCAATTTCTTCAATTATCGTGTTGATGCCGTCATTTGCTATTCTCAAAACCTCCACCTTCTGTAGGTTAAAGAATATGACCGCAGTCGAAGTCGCAGCCGCAGTCGCAGTC---G-C--TCTTACTCCAGAGGGAAGAGTGTTAGTCGAAGCCGAAGCCGTAGCCGAAGTAGAAGCCGAAGCAAGAGCAAAAGGTCTAACACATTACACATATATGTCTGGACTAGTGGTTTTACTTTAATGCAAATAGGGCCTTATTAATATTTGTCTTAGCAGCAAATCTCCTAAAGTTAAGTCTTCAAAGCGCTCAAGATCTCGTTCAAGGTCTGTGTCTTCTCAGTCTCGTTCTGGGTCAAAAGGACGTCCTGTCTCAAGGTAATATTCTGCTTTCTCTTTCTGTTTTTGTTTCGGGATGGGTATAAAAGCATTACATAGTACAAGGTTAATATTTGCATAAACTGCAAATCTTTCATTCTTTATTATCTTATTAGAGTTCTTCAATTTCTCAAGTTGTTCTTCACACTCAAAGTATTGTTGATTTAAGATCTTTAAATCTAAAATGCTCTTGCAGTTGATTACTTTGCCTTTTATCTTCTATGTTATTGTTAGTTTGATGTGCTCACTGCAAAGTTCACATCAAAATGGTGTAGACTCCTGGGTGCTTTAGTCTTCTTTGTTTAACTTGTCCTTGATGCTTTCCCCTTGGTTCTTTCTAAACAATATAGCAATGAGAAGCTATTAGTCTCATATATCATGCATAAAACTCCAAATCCAATCTTATTTGTTTTTTATTATCTTGTCCCTCTAACACAATCTTGTGGTAATTTGTCATATGTGGGGGTACAACGGATTTATGGTAAGTTGTAGAATACAATTTTCCAAAGGTTGCATTTTCTGGCGGCAATCTAGTTGGTAATGTGTAGTTCTGCATACTCTAGTGGGACAACGTGTAGTTACATTTATGTTATTTTCTTCTGTTTCAGGACGGATTTTAAGGGGTTTAGAACTTGCAATGACGTTATCAAACCATTAGAATCAACCAAATGATTGAAAACTATGGTTTCTCACTTTTTTTCTCCATTTTTTCCCCCTATGAAACAAGATTTCATATTCATTTGTTTCCTGCTATTTCAGGATTTTCCAACTATGTTTGCTGATCAATGTGTAACCATTTAGTAAAGACTGGTCATTAGATAGGTTCATGTCTGTTGAAACAAAATTAGAAATTGGAAAGGTTTAGGTCTGAGCAATACAGAAGTAAAGTTTAGTGTTTGAAGGGGAGACTTGGTTCATTTACTTAAGTCATTTTGGAACTGTATTCTAGGGGAAACATACTGCCTTATCAAGGTGTCGTCTTTTATCGTTTCTTTTATAAGTATGAAAAGTCACCTTGTTTGTTTTTCTAGATTTTGGATATGTGCGGCGGTTTGTGGATTTGCATATTAGGATCTTGAGTGGATAATGGTCTTGCCTGCAACTCTTTTTGTTGTGGAGGTACGATGTTTTCTAGATGGCAGCTTTGGGTCTTTTTGTGATGTCTCTCTTCTAATGAGCATCGTGAAATGTTCCATGGGTGCTAGATTGGGATCATGAAGATCACGGATTCTATGGTGGAGCTGGACTGGGGAACCAACTGCCACCTGAATTTGGATCACCACCTATTTTTTGGTAGAAGCATGTTCTAACAAAGCGAAATAAAGACTAGTTCATTCTTTTGGTATCCTGCTAATTGGTCTCTTTGACTGCTCGAATTTAAAATATTACATAGTCTCAATGGTGTAACTTGCATTGTTTTATACTTGCCATATTTTCCACTCTGGATTCTGCCAAATTGCTACTTTCATTATGGTCATGCTGAGGTGGAAGTGAAATCAAAGCAGTTGTGGAGGAAACTTGTTAAGTGGCGGGACTGGGATATTAAATTAAGTTCTTTCTGGAAATTTTGCAGATCTCCATCAAGGTCCAGATCACCAGCACCAGCTGTAAGTCAAATCTACATGTTTTAAAGTGAACGGAATAACCCAAAATTCAAATATATTGGGATCATCCGTCTTGTCTGTCTTTTTTTTGTGCTTACCTGGCCTTTTCAAAGTACATTCTCTCTTTTCTCTGTCTACATAATTATTGCTTTGTATTATGACTGGGTTAATTACAGCGTTCAAAACAATTAAGTGAAAGTCCCAAAAGACGCACTCCCAGCAGTAGCCCCAAAAGACGCACTCCAAGCAGAAGCCCAAGCCGGAGTAGGAGCCGTAGCCAAAGTTTGTCCAGGTCTTACTTCTGTGGCTTGTCGTATATCTTTCAATGTTTGACCGTTTCGTTAATTTTTTCTCCTCGCCTCTTTTTATAGGTAAGATTGCTGGAATCATCAGTGATTGA-GGGTGCCATCATGCTGTGTTTGAGCAGCCTGGTCCACAGTTGGGAGCCCAAGTGACCGGAAGAGTCTGTTGCTCTGCTTACATCAAAATATTTCTGTGTCATTGAACCATGTCAAGACTGTAAT-AATTATTATACTTGTTTTTGTAGCTCTTAA-TCTTGGT-AAAA-GACTGCAATATAGTA</genome_strand>
        <mrna_strand>ATTCAGCATCGTGGCAGGATCTCAAG...................................................................................................................GATCACATGCGTCGTGCTGGGGATGTTTGTTTCTCCCAAGTTTTCCGTGATGGGAGTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACCACTGGTATAATTGATTATACAAACTATGATGACATGAAATATGCT...............................................................................................................................ATCAAAAAGCTTGATGACTCTGAGTTTCGGAATGCCTTTTCTCGTGCGACAATTCGA...................................................................................GTTAAGGAATATGACCGCAGTCGAAGCCGCAGCCGCAGCCGCAGTCGGAGCCGTTCTTACTCCAAAGGAAAGAGTGTTAGTCGAAGCCGTAGCCGTAGCCGTAGCCGAAGCAAAAGTCGTAGCAAGAG............................................................................CAAAAGCAAATCTCCTAAAGTTAAGTCTTCAAAGCGCTCAAGATCTCGTTCAAGGTCTGTGTCTTCTCGGTCTCGTTCTGGGTCAAAAGGACGTCCTGTCTCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCCATCAAGGTCCAGATCGCCAGCACCAGCT.............................................................................................................................................................................CGTTCAAAACCGTTGAGCAAAAGTCCCAAAAGACGCACTCCCAGCAGTAGCCCCAAAAGGCGCACTCCAAGCAGAAGCCCAAGCCGGAGTAGGAGCCGTAGCCGGAGTTTGTCCAG...............................................................................GTAAGATTGTTGGAGTCATCAGTGATTGAGGGGTGCCATCATACTGTGTTTGAGCAGCACGGTCCACAGTTGGGAGTCTAAGGGCCCGGAGGAGTCTGTTGCTCTGCTTACATCAAAATATTTCTGTGTCATTGAACTATGTCAAGACTGTAATAAATTATTATACTTAATTTGGTATCTCTTAAGACTTGGTAAAAAGGACTGCAATATAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E377977" ref_strand="+" ref_description="SGN-E377977 [TUS-20-H16]">
      <seq>ttgagtggataatggtcttgcctgcaactctttttgttgtggagattgggatcatgaagatcacggattctatggtggagctggactggggaaccaactgccacctgaatttggatcaccacctattttttggtagaagcatgttctaacaaagcgaaataaagactagttcattcttttggtatcctgctaattggtctctttgactgctcgaatttaaaatattacatagtctcaatggtgtaacttgcatcgttttatacttgccatattttccactctggattctgccaaattgctactttcattatggtcatgctgaggtggaagtgaaatcaaagcagttgtggaggaaacttgttaagtggcgggactgggatattaaattaagttctttctggaaattttgcagatctccatcaaggtccagatcaccagcaccagctcgttcaaaacaattaagtgaaagtcccaaaagacgcactcccagcagtagccccaaaagacgcactccaagcagaagcccaagccggagtaggagccgtagccaaagtttgtccaggtaagattgctggaatcatcagtgattgagggtgccatcatgctgtgtttgagcagcctggtccacagttgggagcccaagtgaccggaagagtctgttgctctgcttacatcaaaatatttctgtgtcattgaaccatgtcaagactgtaataatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="63873" stop="62217"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63573" g_stop="63530" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63529" i_stop="63444" i_length="86">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63443" g_stop="63042" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="446" r_length="402" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63041" i_stop="62869" i_length="173">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62868" g_stop="62753" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="562" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62752" i_stop="62674" i_length="79">
            <donor d_prob="0.906" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62673" g_stop="62517" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="719" r_length="157" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E377977" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E377977" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63573" e_stop="63530"/>
          <exon e_start="63443" e_stop="63042"/>
          <exon e_start="62868" e_stop="62753"/>
          <exon e_start="62673" e_stop="62517"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGTGGATAATGGTCTTGCCTGCAACTCTTTTTGTTGTGGAGGTACGATGTTTTCTAGATGGCAGCTTTGGGTCTTTTTGTGATGTCTCTCTTCTAATGAGCATCGTGAAATGTTCCATGGGTGCTAGATTGGGATCATGAAGATCACGGATTCTATGGTGGAGCTGGACTGGGGAACCAACTGCCACCTGAATTTGGATCACCACCTATTTTTTGGTAGAAGCATGTTCTAACAAAGCGAAATAAAGACTAGTTCATTCTTTTGGTATCCTGCTAATTGGTCTCTTTGACTGCTCGAATTTAAAATATTACATAGTCTCAATGGTGTAACTTGCATTGTTTTATACTTGCCATATTTTCCACTCTGGATTCTGCCAAATTGCTACTTTCATTATGGTCATGCTGAGGTGGAAGTGAAATCAAAGCAGTTGTGGAGGAAACTTGTTAAGTGGCGGGACTGGGATATTAAATTAAGTTCTTTCTGGAAATTTTGCAGATCTCCATCAAGGTCCAGATCACCAGCACCAGCTGTAAGTCAAATCTACATGTTTTAAAGTGAACGGAATAACCCAAAATTCAAATATATTGGGATCATCCGTCTTGTCTGTCTTTTTTTTGTGCTTACCTGGCCTTTTCAAAGTACATTCTCTCTTTTCTCTGTCTACATAATTATTGCTTTGTATTATGACTGGGTTAATTACAGCGTTCAAAACAATTAAGTGAAAGTCCCAAAAGACGCACTCCCAGCAGTAGCCCCAAAAGACGCACTCCAAGCAGAAGCCCAAGCCGGAGTAGGAGCCGTAGCCAAAGTTTGTCCAGGTCTTACTTCTGTGGCTTGTCGTATATCTTTCAATGTTTGACCGTTTCGTTAATTTTTTCTCCTCGCCTCTTTTTATAGGTAAGATTGCTGGAATCATCAGTGATTGAGGGTGCCATCATGCTGTGTTTGAGCAGCCTGGTCCACAGTTGGGAGCCCAAGTGACCGGAAGAGTCTGTTGCTCTGCTTACATCAAAATATTTCTGTGTCATTGAACCATGTCAAGACTGTAATAATT</genome_strand>
        <mrna_strand>TTGAGTGGATAATGGTCTTGCCTGCAACTCTTTTTGTTGTGGAG......................................................................................ATTGGGATCATGAAGATCACGGATTCTATGGTGGAGCTGGACTGGGGAACCAACTGCCACCTGAATTTGGATCACCACCTATTTTTTGGTAGAAGCATGTTCTAACAAAGCGAAATAAAGACTAGTTCATTCTTTTGGTATCCTGCTAATTGGTCTCTTTGACTGCTCGAATTTAAAATATTACATAGTCTCAATGGTGTAACTTGCATCGTTTTATACTTGCCATATTTTCCACTCTGGATTCTGCCAAATTGCTACTTTCATTATGGTCATGCTGAGGTGGAAGTGAAATCAAAGCAGTTGTGGAGGAAACTTGTTAAGTGGCGGGACTGGGATATTAAATTAAGTTCTTTCTGGAAATTTTGCAGATCTCCATCAAGGTCCAGATCACCAGCACCAGCT.............................................................................................................................................................................CGTTCAAAACAATTAAGTGAAAGTCCCAAAAGACGCACTCCCAGCAGTAGCCCCAAAAGACGCACTCCAAGCAGAAGCCCAAGCCGGAGTAGGAGCCGTAGCCAAAGTTTGTCCAG...............................................................................GTAAGATTGCTGGAATCATCAGTGATTGAGGGTGCCATCATGCTGTGTTTGAGCAGCCTGGTCCACAGTTGGGAGCCCAAGTGACCGGAAGAGTCTGTTGCTCTGCTTACATCAAAATATTTCTGTGTCATTGAACCATGTCAAGACTGTAATAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E252564" ref_strand="+" ref_description="SGN-E252564 [cLEG-20-C11]">
      <seq>ccgggctgcacgcgaatttaaaatattacatagtctcatatggtgtaacttgcattgttttatacttgccatattttccactctggggtctgccaaattgctactttcattatggtcatgctgaggtggaagtgaaatcaaagcagttgtggaggaaacttgttaagtggcgggactgggatattaaattaagttctttctggaaattttgcagatctccatcaaggtccagatcaccagcaccagctcgttcaaaacaattaagtgaaagtcccaaaagacgcactcccagcagtagccccaaaagacgcactccaagcagaagcccaagccggagtaggagccgtagccaaagtttgtccaggtaagattgctggaatcatcagtgattgagggtgccatcatgctgtgtttgagcagcctggtccacagttgggagcccaagtgaccggaagagtctgttgctctgcttacatcaaaatatttctgtgtcattgaaccatgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="63578" stop="62232"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63290" g_stop="63042" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63041" i_stop="62869" i_length="173">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62868" g_stop="62753" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="364" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62752" i_stop="62674" i_length="79">
            <donor d_prob="0.906" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62673" g_stop="62532" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="506" r_length="142" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E252564" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E252564" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63290" e_stop="63042"/>
          <exon e_start="62868" e_stop="62753"/>
          <exon e_start="62673" e_stop="62532"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTTTGACTGCTCGAATTTAAAATATTACATAGTCTCA-ATGGTGTAACTTGCATTGTTTTATACTTGCCATATTTTCCACTCTGGATTCTGCCAAATTGCTACTTTCATTATGGTCATGCTGAGGTGGAAGTGAAATCAAAGCAGTTGTGGAGGAAACTTGTTAAGTGGCGGGACTGGGATATTAAATTAAGTTCTTTCTGGAAATTTTGCAGATCTCCATCAAGGTCCAGATCACCAGCACCAGCTGTAAGTCAAATCTACATGTTTTAAAGTGAACGGAATAACCCAAAATTCAAATATATTGGGATCATCCGTCTTGTCTGTCTTTTTTTTGTGCTTACCTGGCCTTTTCAAAGTACATTCTCTCTTTTCTCTGTCTACATAATTATTGCTTTGTATTATGACTGGGTTAATTACAGCGTTCAAAACAATTAAGTGAAAGTCCCAAAAGACGCACTCCCAGCAGTAGCCCCAAAAGACGCACTCCAAGCAGAAGCCCAAGCCGGAGTAGGAGCCGTAGCCAAAGTTTGTCCAGGTCTTACTTCTGTGGCTTGTCGTATATCTTTCAATGTTTGACCGTTTCGTTAATTTTTTCTCCTCGCCTCTTTTTATAGGTAAGATTGCTGGAATCATCAGTGATTGAGGGTGCCATCATGCTGTGTTTGAGCAGCCTGGTCCACAGTTGGGAGCCCAAGTGACCGGAAGAGTCTGTTGCTCTGCTTACATCAAAATATTTCTGTGTCATTGAACCATGTC</genome_strand>
        <mrna_strand>CCGGGCTG-C-ACGCGAATTTAAAATATTACATAGTCTCATATGGTGTAACTTGCATTGTTTTATACTTGCCATATTTTCCACTCTGGGGTCTGCCAAATTGCTACTTTCATTATGGTCATGCTGAGGTGGAAGTGAAATCAAAGCAGTTGTGGAGGAAACTTGTTAAGTGGCGGGACTGGGATATTAAATTAAGTTCTTTCTGGAAATTTTGCAGATCTCCATCAAGGTCCAGATCACCAGCACCAGCT.............................................................................................................................................................................CGTTCAAAACAATTAAGTGAAAGTCCCAAAAGACGCACTCCCAGCAGTAGCCCCAAAAGACGCACTCCAAGCAGAAGCCCAAGCCGGAGTAGGAGCCGTAGCCAAAGTTTGTCCAG...............................................................................GTAAGATTGCTGGAATCATCAGTGATTGAGGGTGCCATCATGCTGTGTTTGAGCAGCCTGGTCCACAGTTGGGAGCCCAAGTGACCGGAAGAGTCTGTTGCTCTGCTTACATCAAAATATTTCTGTGTCATTGAACCATGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E746625" ref_strand="+" ref_description="SGN-E746625 [GI|47104125]">
      <seq>aatcttcaaaatttcctcttcttctacgctttctgctctcgatcttcccaggaacaatgagtcggtcgagtaggacactttatgttggcaatcttcctggtgatgttcgtgagcgtgaagtggaagatctcttttacaagtatggaccgattgcacatattgagctgaaaattccaccaagaccccctggttatgcttttgttgagtttgaagaggctcgtgatgctgaagatgctattcgtggtcgtgatggctatgattttgatgggcaccgtctgcgggttgagcttgcacatggcgggcgtggtaactcatcatcaaatgatcgttatggtggtggcggtggcggccgtggtcagcgtggtggaggagtgtcaagacgttcagattatcgagtgttagttacaggattaccccattcagcatcgtggcaggatctcaaggatcacatgcgccgtgctggggatgtttgtttctcccaagttttccgtgacgggagtggaaccactggtataattgattatacaaactatgatgacatgaaatatgctatcaaaaagcttgatgactctgagtttcgaaatgccttttctcgtgcgacaattcgagttaaagaatatgaccgcagtcgaagtcgcagccgcagtcgcagtcgctcttactccagagggaagagtgttagtcgaagccgaagccgtagccgaagtagaagccgaagcaagagcaaaagcaaatctcctaaagttaagtcttcaaagcgctcaagatctcgttcaaggtctgtgtcttctcagtctcgttctgggtcaaaaggacgtcctgtctcaagatctccatcaaggtccagatcaccagcaccagctcgttcaaaacaattaagtgaaagtcccaaaagacgcactcccagcagtagccccaaaagacgcactccaagcagaagcccaagccggagtaggagccgtagccaaagtttgtccaggtaagattgctggaatcatcagtgattgagggtgccatcatgctgtgtttgagcagcctggtccacagttgggagcccaagtgaccggaagagtctgttgctctgcttacatcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="68946" stop="19699"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68646" g_stop="68596" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68595" i_stop="68152" i_length="444">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68151" g_stop="68063" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="140" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68062" i_stop="67796" i_length="267">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67795" g_stop="67730" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="206" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67729" i_stop="67628" i_length="102">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67627" g_stop="67553" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="281" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67552" i_stop="67458" i_length="95">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67457" g_stop="67343" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="396" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67342" i_stop="67258" i_length="85">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67257" g_stop="67211" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="443" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="67210" i_stop="67096" i_length="115">
            <donor d_prob="0.611" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="67095" g_stop="67038" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="501" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="67037" i_stop="65269" i_length="1769">
            <donor d_prob="0.732" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="65268" g_stop="65219" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="551" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="65218" i_stop="65092" i_length="127">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="65091" g_stop="65035" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="608" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="65034" i_stop="64952" i_length="83">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.791" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="64951" g_stop="64830" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="609" r_stop="730" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="64829" i_stop="64748" i_length="82">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.433" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="64747" g_stop="64649" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="731" r_stop="829" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="64648" i_stop="63076" i_length="1573">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="63075" g_stop="63042" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="830" r_stop="863" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="63041" i_stop="62869" i_length="173">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="62868" g_stop="62753" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="864" r_stop="979" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="62752" i_stop="62674" i_length="79">
            <donor d_prob="0.906" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="62673" g_stop="62546" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="980" r_stop="1107" r_length="128" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E746625" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>1107</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746625" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68646" e_stop="68596"/>
          <exon e_start="68151" e_stop="68063"/>
          <exon e_start="67795" e_stop="67730"/>
          <exon e_start="67627" e_stop="67553"/>
          <exon e_start="67457" e_stop="67343"/>
          <exon e_start="67257" e_stop="67211"/>
          <exon e_start="67095" e_stop="67038"/>
          <exon e_start="65268" e_stop="65219"/>
          <exon e_start="65091" e_stop="65035"/>
          <exon e_start="64951" e_stop="64830"/>
          <exon e_start="64747" e_stop="64649"/>
          <exon e_start="63075" e_stop="63042"/>
          <exon e_start="62868" e_stop="62753"/>
          <exon e_start="62673" e_stop="62546"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTTCAAAATTTCCTCTTCTTCTACGCTTTCTGCTCTCGATCTTCCCAGGTATGTTCTCTAATGGAGGTTACGTAAATCGTTTTTTTTAGCTTTAATTGATATAATCATCAATATATCGTCAAAATATAGTTCAATTTTTTCCTTCTTTCCCATTTACCTTGCTTGTCAATGCAAAAATGTCCGGGTTGTATAAATTAATGTCAGTAAAATTGTGGAAAGTTGCTTTGTTTATTCTTTAGATGATCAAGATACGTTTCTGCGACTGAAATTGGTTTTGCAACTGAATAATTACTAGAGTTGAAGCTTTTATCCTTTTTCTTTTCCCGTTTTGTCCTTAGAGAGAATGTATGAACTGTTTTAAGTCGTTGTTGTTTTTTGCTTAACTGCAAGAGGTGCTTTTTTCTTGTCCTTGTGGTCAATTAACTGCAAGAGGTGCTTGTTTCTTGTTTTTGTGGACAATTGACTGCAAGTGAATGTGGTTTTGCCTTTCAGGAACAATGAGTCGGTCGAGTAGGACACTTTATGTTGGCAATCTTCCTGGTGATGTTCGTGAGCGTGAAGTGGAAGATCTCTTTTACAAGGTGCTTATACTCTAGATGGCTCCCTACATTCTTTGATATCATTTCATAATGCTTATAAACAAAAAGAAAAATGATTAGAAGTAAAATTATGTTTTTGAGTGAAATGGGTACAAATAGAGTGGTATGGATATAGGGAATTCATTATCGACAAACTCAAATTAAGGAGTATTTCTTTTGTAAGGCTTGTGCACATGTTTAATTGTTCTGTCACAATTTAACAGATTTTAACTGTTAGAAACTTATAAACAATTTGATGTGTGAGTGCAGTATGGACCGATTGCACATATTGAGCTGAAAATTCCACCAAGACCCCCTGGTTATGCTTTTGTTGAGGTGAGTTTGAGCTGCCTTGGTTCTGATGGATTTCATTAGATCAGCCTGCTATGCGCCTTTTAAAGCTATTCTGACCTTTATATTGGCCAAAAACTATAACAGTTTGAAGAGGCTCGTGATGCTGAAGATGCTATTCGTGGTCGTGATGGCTATGATTTTGATGGGCACCGTCTGCGGGTCGGTCAAACTTATAGTTAGCGTATAGTTTACACAAGGTTACTAGTTTTTGCCTTGTTGGATGTTGAATCTATTACAATTGCTCATACTGGCAGGTTGAGCTTGCACATGGCGGGCGTGGTAACTCATCATCAAATGATCGTTATGGTGGTGGCGGTGGCGGCCGTGGTCAGCGTGGTGGAGGAGTGTCAAGACGTTCAGATTATCGAGGTGTGTCTTATGGGTTATGTGCTTTCTACATTGGAATACATGTTATATCTTTTCTTATGTTCTGATATCTTTTGTTGTATTTCAGTGTTAGTTACAGGATTACCCCATTCAGCATCGTGGCAGGATCTCAAGGTGAGTCGGTGTCTTTGAGTTGTGAATCATAGGGACTTACCAAGAAAGTGATCCTCCTTTCCCTCAAAATTATTCTGTAATTTCTGAGTATTGTTAACTTTTATTTCTTATGTAGGATCACATGCGCCGTGCTGGGGATGTTTGTTTCTCCCAAGTTTTCCGTGACGGGAGTGGTAAGATTTAAACAGCTAATGGCAGATCTACTTTTTCTCTTTGAACTGGTATAATGGTTTAACTGTCAAGCACACGGAACTCCTCCATGTGGAATGGCAACCTACAATGATACACCAAGCAATAAGTCTTTGATGTGAGCTTACAATGGTACTCACTAATTGTACTGATGATTTGGAGAAAGACCTGTATACAAACTGTATATCGAAAGATGGAGAATTCTACTGTAACACACTATTCCTCTTCTTGCTCATCGTGGTTGACCTGTCATAGGAATAGGTTAAGGATACTTTTCTTTATATCATAGTGTAAATTAATGAGTTTATAATCAAGTATTATATTAAGGGTGCAAGTCTGTCATTGTTAATTATTACTGTCATTCTTTTTATATTTAGAGCTTTGGTAATAACTGTGGGTTCATACCTGGGATATCTGATAAATTTGGAAAAATGCATAGGATCTATGACTCATAATTTGGGTTTTCAGTATAAGCTGATAAGTCTTTCTTTGTCTAGAAAAATGTTATATTGAAGGAAAAATAATATAGGAGAGATCATCTCTTCAGAAAATGTAGTGGAAATAATCATCGACATATTGATAACAATATTACTTGATGAAAACAGGATAAGGTCTTGACAAACTGGAGGGGAAAATATGCAGGTGGAGCAAAAAATTGGGAGGAAAGATGGAAAACTAAATATAAAAGAAACACTGAGTAGGAAAGAAGCACAAGTTAGATGTGTTATGGTTCCTCGAGGGTAGGGTGGGGTGGGGAGACCAACGTTGCTGCAAGCTTGAGGTCGGGGTAGGTCAAAAACCTAGAGGTGTTGGGGCATCATTGGTTGGTGGCTGGGTGAGGGCAAGATAAGTTCTGCTCTCAGGAAGAAATGGTGAAAAAGATGAAGAGAGATGTGTATTTTTGTTGTCTTCCCATCTAAGAATGTCTCGCCCTTGCCCATCTATTGTCCTCTTTTGCTCTTCTAATACAATTTGTTAATTTGGATTATGATCCTGTTATTTATCCCATTTTTTTCTGAGGACTATCATCCCTTGAGACAATTTAAAAGCTGGTTATCGACTGTGCTGCCTAATGTTTGGTGGTTGGTTGGATAAATTTGTTTAGACTAATCTGATGCACCTGATGACCCCATTAACTTGTATGATGTTTTGGATTTCTTTCCCCGTTTCTTTTTGAATTTTATTTTGGTACAACTGTTTGAAGTCTTTAACTAGATGCTAACCCAATGTGCCAAAATGTTCCCACGCTCTATGTTGATGACTGCATATGCAATTTTCTCCTCTATGATTCATTTCTACGTTTTCTGATCACGTGCAGAACTTGTCATATTGGAGGGTCCACTTTTGTTTTTTAAGGGAATGAAAATTAAGAGGAAGCAAATGATATTTGATGTAGGCCGAGAAAACTTGTTTTTTGAATCTTTTTATTGATATTTTTTGATTCTTTTTTGGTTTCAGTAAACATTTTGGTGCGATTTGCAAAAGACAACTTTTGTTTTAAGCAACAGTTGTTTTTAGTTTCCTGTAAAACTTCACCATAAATTTTTCTAATTCAAGTTTACCATAAACTATTGTGATCTAACTATTCCTAGAGTTTTCTGAATCCATAATGGCACACAAAATCGCTCTTTGCTTTAACTTGTTAGTGCACAATGCTTATTTTTACCCTGTAGGAAGCATCTTGATCTTCATATTACTGTCATTTCTGGTCCACAAGTTATTCTGATATCAACAAATTTGCTTGGACTTTCAGGAACCACTGGTATAATTGATTATACAAACTATGATGACATGAAATATGCTGTAAGCCATCTTCTCTTTTCTCCTTCCCTTTAGTTGGGTTTCCTTCACCTTGATGCTGTTGACAATATTTGATTTTTCCTTTATACAACTAAGAGGTGCAGCTAATATTATCCTTTCATGTGTATAGATCAAAAAGCTTGATGACTCTGAGTTTCGAAATGCCTTTTCTCGTGCGACAATTCGAGTATGACACAAACAATTTTCAATTTCTTCAATTATCGTGTTGATGCCGTCATTTGCTATTCTCAAAACCTCCACCTTCTGTAGGTTAAAGAATATGACCGCAGTCGAAGTCGCAGCCGCAGTCGCAGTCGCTCTTACTCCAGAGGGAAGAGTGTTAGTCGAAGCCGAAGCCGTAGCCGAAGTAGAAGCCGAAGCAAGAGCAAAAGGTCTAACACATTACACATATATGTCTGGACTAGTGGTTTTACTTTAATGCAAATAGGGCCTTATTAATATTTGTCTTAGCAGCAAATCTCCTAAAGTTAAGTCTTCAAAGCGCTCAAGATCTCGTTCAAGGTCTGTGTCTTCTCAGTCTCGTTCTGGGTCAAAAGGACGTCCTGTCTCAAGGTAATATTCTGCTTTCTCTTTCTGTTTTTGTTTCGGGATGGGTATAAAAGCATTACATAGTACAAGGTTAATATTTGCATAAACTGCAAATCTTTCATTCTTTATTATCTTATTAGAGTTCTTCAATTTCTCAAGTTGTTCTTCACACTCAAAGTATTGTTGATTTAAGATCTTTAAATCTAAAATGCTCTTGCAGTTGATTACTTTGCCTTTTATCTTCTATGTTATTGTTAGTTTGATGTGCTCACTGCAAAGTTCACATCAAAATGGTGTAGACTCCTGGGTGCTTTAGTCTTCTTTGTTTAACTTGTCCTTGATGCTTTCCCCTTGGTTCTTTCTAAACAATATAGCAATGAGAAGCTATTAGTCTCATATATCATGCATAAAACTCCAAATCCAATCTTATTTGTTTTTTATTATCTTGTCCCTCTAACACAATCTTGTGGTAATTTGTCATATGTGGGGGTACAACGGATTTATGGTAAGTTGTAGAATACAATTTTCCAAAGGTTGCATTTTCTGGCGGCAATCTAGTTGGTAATGTGTAGTTCTGCATACTCTAGTGGGACAACGTGTAGTTACATTTATGTTATTTTCTTCTGTTTCAGGACGGATTTTAAGGGGTTTAGAACTTGCAATGACGTTATCAAACCATTAGAATCAACCAAATGATTGAAAACTATGGTTTCTCACTTTTTTTCTCCATTTTTTCCCCCTATGAAACAAGATTTCATATTCATTTGTTTCCTGCTATTTCAGGATTTTCCAACTATGTTTGCTGATCAATGTGTAACCATTTAGTAAAGACTGGTCATTAGATAGGTTCATGTCTGTTGAAACAAAATTAGAAATTGGAAAGGTTTAGGTCTGAGCAATACAGAAGTAAAGTTTAGTGTTTGAAGGGGAGACTTGGTTCATTTACTTAAGTCATTTTGGAACTGTATTCTAGGGGAAACATACTGCCTTATCAAGGTGTCGTCTTTTATCGTTTCTTTTATAAGTATGAAAAGTCACCTTGTTTGTTTTTCTAGATTTTGGATATGTGCGGCGGTTTGTGGATTTGCATATTAGGATCTTGAGTGGATAATGGTCTTGCCTGCAACTCTTTTTGTTGTGGAGGTACGATGTTTTCTAGATGGCAGCTTTGGGTCTTTTTGTGATGTCTCTCTTCTAATGAGCATCGTGAAATGTTCCATGGGTGCTAGATTGGGATCATGAAGATCACGGATTCTATGGTGGAGCTGGACTGGGGAACCAACTGCCACCTGAATTTGGATCACCACCTATTTTTTGGTAGAAGCATGTTCTAACAAAGCGAAATAAAGACTAGTTCATTCTTTTGGTATCCTGCTAATTGGTCTCTTTGACTGCTCGAATTTAAAATATTACATAGTCTCAATGGTGTAACTTGCATTGTTTTATACTTGCCATATTTTCCACTCTGGATTCTGCCAAATTGCTACTTTCATTATGGTCATGCTGAGGTGGAAGTGAAATCAAAGCAGTTGTGGAGGAAACTTGTTAAGTGGCGGGACTGGGATATTAAATTAAGTTCTTTCTGGAAATTTTGCAGATCTCCATCAAGGTCCAGATCACCAGCACCAGCTGTAAGTCAAATCTACATGTTTTAAAGTGAACGGAATAACCCAAAATTCAAATATATTGGGATCATCCGTCTTGTCTGTCTTTTTTTTGTGCTTACCTGGCCTTTTCAAAGTACATTCTCTCTTTTCTCTGTCTACATAATTATTGCTTTGTATTATGACTGGGTTAATTACAGCGTTCAAAACAATTAAGTGAAAGTCCCAAAAGACGCACTCCCAGCAGTAGCCCCAAAAGACGCACTCCAAGCAGAAGCCCAAGCCGGAGTAGGAGCCGTAGCCAAAGTTTGTCCAGGTCTTACTTCTGTGGCTTGTCGTATATCTTTCAATGTTTGACCGTTTCGTTAATTTTTTCTCCTCGCCTCTTTTTATAGGTAAGATTGCTGGAATCATCAGTGATTGAGGGTGCCATCATGCTGTGTTTGAGCAGCCTGGTCCACAGTTGGGAGCCCAAGTGACCGGAAGAGTCTGTTGCTCTGCTTACATCAAAATATTTCTGTGT</genome_strand>
        <mrna_strand>AATCTTCAAAATTTCCTCTTCTTCTACGCTTTCTGCTCTCGATCTTCCCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAATGAGTCGGTCGAGTAGGACACTTTATGTTGGCAATCTTCCTGGTGATGTTCGTGAGCGTGAAGTGGAAGATCTCTTTTACAAG...........................................................................................................................................................................................................................................................................TATGGACCGATTGCACATATTGAGCTGAAAATTCCACCAAGACCCCCTGGTTATGCTTTTGTTGAG......................................................................................................TTTGAAGAGGCTCGTGATGCTGAAGATGCTATTCGTGGTCGTGATGGCTATGATTTTGATGGGCACCGTCTGCGG...............................................................................................GTTGAGCTTGCACATGGCGGGCGTGGTAACTCATCATCAAATGATCGTTATGGTGGTGGCGGTGGCGGCCGTGGTCAGCGTGGTGGAGGAGTGTCAAGACGTTCAGATTATCGAG.....................................................................................TGTTAGTTACAGGATTACCCCATTCAGCATCGTGGCAGGATCTCAAG...................................................................................................................GATCACATGCGCCGTGCTGGGGATGTTTGTTTCTCCCAAGTTTTCCGTGACGGGAGTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACCACTGGTATAATTGATTATACAAACTATGATGACATGAAATATGCT...............................................................................................................................ATCAAAAAGCTTGATGACTCTGAGTTTCGAAATGCCTTTTCTCGTGCGACAATTCGA...................................................................................GTTAAAGAATATGACCGCAGTCGAAGTCGCAGCCGCAGTCGCAGTCGCTCTTACTCCAGAGGGAAGAGTGTTAGTCGAAGCCGAAGCCGTAGCCGAAGTAGAAGCCGAAGCAAGAGCAAAAG..................................................................................CAAATCTCCTAAAGTTAAGTCTTCAAAGCGCTCAAGATCTCGTTCAAGGTCTGTGTCTTCTCAGTCTCGTTCTGGGTCAAAAGGACGTCCTGTCTCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCCATCAAGGTCCAGATCACCAGCACCAGCT.............................................................................................................................................................................CGTTCAAAACAATTAAGTGAAAGTCCCAAAAGACGCACTCCCAGCAGTAGCCCCAAAAGACGCACTCCAAGCAGAAGCCCAAGCCGGAGTAGGAGCCGTAGCCAAAGTTTGTCCAG...............................................................................GTAAGATTGCTGGAATCATCAGTGATTGAGGGTGCCATCATGCTGTGTTTGAGCAGCCTGGTCCACAGTTGGGAGCCCAAGTGACCGGAAGAGTCTGTTGCTCTGCTTACATCAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E262412" ref_strand="+" ref_description="SGN-E262412 [cLEG-56-G16]">
      <seq>gcgggttgagcttgcacatggcgggcgtggtaactcatcatcaaatgatcgttatggtggtggcggtggcggccgtggtcagcgtggtggaggagtgtcaagacgttcagattatcgagtgttagttacaggattaccccattcagcatcgtggcaggatctcaaggatcacatgcgccgtgctggggatgtttgtttctcccaagttttccgtgacgggagtggaaccactggtataattgattatacaaactatgatgacatgaaatatgctatcaaaaagcttgatgactctgagtttcgaaatgccttttctcgtgcgacaattcgagttaaagaatatgaccgcagtcgaagtcgcagccgcagtcgcagtcgctcttactccagagggaagagtgttagtcgaagccgaagccgtagccgaagtagaagccgaagcaagagcaaaagcaaatctcctaaagttaagtcttcaaagcgctcaagatctcgttcaaggtctgtgtcttctcagtctcgttctgggtcaaaaggacgtcctgtctcaagatctccatcaaggtccagatcaccagcaccagctcgttcaaaacaattaagtgaaagtcccaaaagacgcactcccagcagtagccccaaaagacgcactccaagcagaagcccaagccggagtaggagccgtagccaaagtttgtccaggtaagattgctggaatcatcagtgattgagggtgccatcatgctgtgtttgagcagcctggtccacagttgggagcccaagtgaccgggagagtctgttgctctgctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="67761" stop="62265"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67556" g_stop="67553" g_length="4"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="4" r_length="4" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67552" i_stop="67458" i_length="95">
            <donor d_prob="0.964" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67457" g_stop="67343" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="119" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67342" i_stop="67258" i_length="85">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67257" g_stop="67211" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="166" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67210" i_stop="67096" i_length="115">
            <donor d_prob="0.611" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67095" g_stop="67038" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="224" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67037" i_stop="65269" i_length="1769">
            <donor d_prob="0.732" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="65268" g_stop="65219" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="274" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="65218" i_stop="65092" i_length="127">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="65091" g_stop="65035" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="331" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="65034" i_stop="64952" i_length="83">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.791" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="64951" g_stop="64830" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="453" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="64829" i_stop="64748" i_length="82">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.433" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="64747" g_stop="64649" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="552" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="64648" i_stop="63076" i_length="1573">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="63075" g_stop="63042" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="553" r_stop="586" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="63041" i_stop="62869" i_length="173">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="62868" g_stop="62753" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="587" r_stop="702" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="62752" i_stop="62674" i_length="79">
            <donor d_prob="0.906" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="62673" g_stop="62565" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="703" r_stop="811" r_length="109" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E262412" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>811</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262412" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67556" e_stop="67553"/>
          <exon e_start="67457" e_stop="67343"/>
          <exon e_start="67257" e_stop="67211"/>
          <exon e_start="67095" e_stop="67038"/>
          <exon e_start="65268" e_stop="65219"/>
          <exon e_start="65091" e_stop="65035"/>
          <exon e_start="64951" e_stop="64830"/>
          <exon e_start="64747" e_stop="64649"/>
          <exon e_start="63075" e_stop="63042"/>
          <exon e_start="62868" e_stop="62753"/>
          <exon e_start="62673" e_stop="62565"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGGGTCGGTCAAACTTATAGTTAGCGTATAGTTTACACAAGGTTACTAGTTTTTGCCTTGTTGGATGTTGAATCTATTACAATTGCTCATACTGGCAGGTTGAGCTTGCACATGGCGGGCGTGGTAACTCATCATCAAATGATCGTTATGGTGGTGGCGGTGGCGGCCGTGGTCAGCGTGGTGGAGGAGTGTCAAGACGTTCAGATTATCGAGGTGTGTCTTATGGGTTATGTGCTTTCTACATTGGAATACATGTTATATCTTTTCTTATGTTCTGATATCTTTTGTTGTATTTCAGTGTTAGTTACAGGATTACCCCATTCAGCATCGTGGCAGGATCTCAAGGTGAGTCGGTGTCTTTGAGTTGTGAATCATAGGGACTTACCAAGAAAGTGATCCTCCTTTCCCTCAAAATTATTCTGTAATTTCTGAGTATTGTTAACTTTTATTTCTTATGTAGGATCACATGCGCCGTGCTGGGGATGTTTGTTTCTCCCAAGTTTTCCGTGACGGGAGTGGTAAGATTTAAACAGCTAATGGCAGATCTACTTTTTCTCTTTGAACTGGTATAATGGTTTAACTGTCAAGCACACGGAACTCCTCCATGTGGAATGGCAACCTACAATGATACACCAAGCAATAAGTCTTTGATGTGAGCTTACAATGGTACTCACTAATTGTACTGATGATTTGGAGAAAGACCTGTATACAAACTGTATATCGAAAGATGGAGAATTCTACTGTAACACACTATTCCTCTTCTTGCTCATCGTGGTTGACCTGTCATAGGAATAGGTTAAGGATACTTTTCTTTATATCATAGTGTAAATTAATGAGTTTATAATCAAGTATTATATTAAGGGTGCAAGTCTGTCATTGTTAATTATTACTGTCATTCTTTTTATATTTAGAGCTTTGGTAATAACTGTGGGTTCATACCTGGGATATCTGATAAATTTGGAAAAATGCATAGGATCTATGACTCATAATTTGGGTTTTCAGTATAAGCTGATAAGTCTTTCTTTGTCTAGAAAAATGTTATATTGAAGGAAAAATAATATAGGAGAGATCATCTCTTCAGAAAATGTAGTGGAAATAATCATCGACATATTGATAACAATATTACTTGATGAAAACAGGATAAGGTCTTGACAAACTGGAGGGGAAAATATGCAGGTGGAGCAAAAAATTGGGAGGAAAGATGGAAAACTAAATATAAAAGAAACACTGAGTAGGAAAGAAGCACAAGTTAGATGTGTTATGGTTCCTCGAGGGTAGGGTGGGGTGGGGAGACCAACGTTGCTGCAAGCTTGAGGTCGGGGTAGGTCAAAAACCTAGAGGTGTTGGGGCATCATTGGTTGGTGGCTGGGTGAGGGCAAGATAAGTTCTGCTCTCAGGAAGAAATGGTGAAAAAGATGAAGAGAGATGTGTATTTTTGTTGTCTTCCCATCTAAGAATGTCTCGCCCTTGCCCATCTATTGTCCTCTTTTGCTCTTCTAATACAATTTGTTAATTTGGATTATGATCCTGTTATTTATCCCATTTTTTTCTGAGGACTATCATCCCTTGAGACAATTTAAAAGCTGGTTATCGACTGTGCTGCCTAATGTTTGGTGGTTGGTTGGATAAATTTGTTTAGACTAATCTGATGCACCTGATGACCCCATTAACTTGTATGATGTTTTGGATTTCTTTCCCCGTTTCTTTTTGAATTTTATTTTGGTACAACTGTTTGAAGTCTTTAACTAGATGCTAACCCAATGTGCCAAAATGTTCCCACGCTCTATGTTGATGACTGCATATGCAATTTTCTCCTCTATGATTCATTTCTACGTTTTCTGATCACGTGCAGAACTTGTCATATTGGAGGGTCCACTTTTGTTTTTTAAGGGAATGAAAATTAAGAGGAAGCAAATGATATTTGATGTAGGCCGAGAAAACTTGTTTTTTGAATCTTTTTATTGATATTTTTTGATTCTTTTTTGGTTTCAGTAAACATTTTGGTGCGATTTGCAAAAGACAACTTTTGTTTTAAGCAACAGTTGTTTTTAGTTTCCTGTAAAACTTCACCATAAATTTTTCTAATTCAAGTTTACCATAAACTATTGTGATCTAACTATTCCTAGAGTTTTCTGAATCCATAATGGCACACAAAATCGCTCTTTGCTTTAACTTGTTAGTGCACAATGCTTATTTTTACCCTGTAGGAAGCATCTTGATCTTCATATTACTGTCATTTCTGGTCCACAAGTTATTCTGATATCAACAAATTTGCTTGGACTTTCAGGAACCACTGGTATAATTGATTATACAAACTATGATGACATGAAATATGCTGTAAGCCATCTTCTCTTTTCTCCTTCCCTTTAGTTGGGTTTCCTTCACCTTGATGCTGTTGACAATATTTGATTTTTCCTTTATACAACTAAGAGGTGCAGCTAATATTATCCTTTCATGTGTATAGATCAAAAAGCTTGATGACTCTGAGTTTCGAAATGCCTTTTCTCGTGCGACAATTCGAGTATGACACAAACAATTTTCAATTTCTTCAATTATCGTGTTGATGCCGTCATTTGCTATTCTCAAAACCTCCACCTTCTGTAGGTTAAAGAATATGACCGCAGTCGAAGTCGCAGCCGCAGTCGCAGTCGCTCTTACTCCAGAGGGAAGAGTGTTAGTCGAAGCCGAAGCCGTAGCCGAAGTAGAAGCCGAAGCAAGAGCAAAAGGTCTAACACATTACACATATATGTCTGGACTAGTGGTTTTACTTTAATGCAAATAGGGCCTTATTAATATTTGTCTTAGCAGCAAATCTCCTAAAGTTAAGTCTTCAAAGCGCTCAAGATCTCGTTCAAGGTCTGTGTCTTCTCAGTCTCGTTCTGGGTCAAAAGGACGTCCTGTCTCAAGGTAATATTCTGCTTTCTCTTTCTGTTTTTGTTTCGGGATGGGTATAAAAGCATTACATAGTACAAGGTTAATATTTGCATAAACTGCAAATCTTTCATTCTTTATTATCTTATTAGAGTTCTTCAATTTCTCAAGTTGTTCTTCACACTCAAAGTATTGTTGATTTAAGATCTTTAAATCTAAAATGCTCTTGCAGTTGATTACTTTGCCTTTTATCTTCTATGTTATTGTTAGTTTGATGTGCTCACTGCAAAGTTCACATCAAAATGGTGTAGACTCCTGGGTGCTTTAGTCTTCTTTGTTTAACTTGTCCTTGATGCTTTCCCCTTGGTTCTTTCTAAACAATATAGCAATGAGAAGCTATTAGTCTCATATATCATGCATAAAACTCCAAATCCAATCTTATTTGTTTTTTATTATCTTGTCCCTCTAACACAATCTTGTGGTAATTTGTCATATGTGGGGGTACAACGGATTTATGGTAAGTTGTAGAATACAATTTTCCAAAGGTTGCATTTTCTGGCGGCAATCTAGTTGGTAATGTGTAGTTCTGCATACTCTAGTGGGACAACGTGTAGTTACATTTATGTTATTTTCTTCTGTTTCAGGACGGATTTTAAGGGGTTTAGAACTTGCAATGACGTTATCAAACCATTAGAATCAACCAAATGATTGAAAACTATGGTTTCTCACTTTTTTTCTCCATTTTTTCCCCCTATGAAACAAGATTTCATATTCATTTGTTTCCTGCTATTTCAGGATTTTCCAACTATGTTTGCTGATCAATGTGTAACCATTTAGTAAAGACTGGTCATTAGATAGGTTCATGTCTGTTGAAACAAAATTAGAAATTGGAAAGGTTTAGGTCTGAGCAATACAGAAGTAAAGTTTAGTGTTTGAAGGGGAGACTTGGTTCATTTACTTAAGTCATTTTGGAACTGTATTCTAGGGGAAACATACTGCCTTATCAAGGTGTCGTCTTTTATCGTTTCTTTTATAAGTATGAAAAGTCACCTTGTTTGTTTTTCTAGATTTTGGATATGTGCGGCGGTTTGTGGATTTGCATATTAGGATCTTGAGTGGATAATGGTCTTGCCTGCAACTCTTTTTGTTGTGGAGGTACGATGTTTTCTAGATGGCAGCTTTGGGTCTTTTTGTGATGTCTCTCTTCTAATGAGCATCGTGAAATGTTCCATGGGTGCTAGATTGGGATCATGAAGATCACGGATTCTATGGTGGAGCTGGACTGGGGAACCAACTGCCACCTGAATTTGGATCACCACCTATTTTTTGGTAGAAGCATGTTCTAACAAAGCGAAATAAAGACTAGTTCATTCTTTTGGTATCCTGCTAATTGGTCTCTTTGACTGCTCGAATTTAAAATATTACATAGTCTCAATGGTGTAACTTGCATTGTTTTATACTTGCCATATTTTCCACTCTGGATTCTGCCAAATTGCTACTTTCATTATGGTCATGCTGAGGTGGAAGTGAAATCAAAGCAGTTGTGGAGGAAACTTGTTAAGTGGCGGGACTGGGATATTAAATTAAGTTCTTTCTGGAAATTTTGCAGATCTCCATCAAGGTCCAGATCACCAGCACCAGCTGTAAGTCAAATCTACATGTTTTAAAGTGAACGGAATAACCCAAAATTCAAATATATTGGGATCATCCGTCTTGTCTGTCTTTTTTTTGTGCTTACCTGGCCTTTTCAAAGTACATTCTCTCTTTTCTCTGTCTACATAATTATTGCTTTGTATTATGACTGGGTTAATTACAGCGTTCAAAACAATTAAGTGAAAGTCCCAAAAGACGCACTCCCAGCAGTAGCCCCAAAAGACGCACTCCAAGCAGAAGCCCAAGCCGGAGTAGGAGCCGTAGCCAAAGTTTGTCCAGGTCTTACTTCTGTGGCTTGTCGTATATCTTTCAATGTTTGACCGTTTCGTTAATTTTTTCTCCTCGCCTCTTTTTATAGGTAAGATTGCTGGAATCATCAGTGATTGAGGGTGCCATCATGCTGTGTTTGAGCAGCCTGGTCCACAGTTGGGAGCCCAAGTGACCGGAAGAGTCTGTTGCTCTGCTTA</genome_strand>
        <mrna_strand>GCGG...............................................................................................GTTGAGCTTGCACATGGCGGGCGTGGTAACTCATCATCAAATGATCGTTATGGTGGTGGCGGTGGCGGCCGTGGTCAGCGTGGTGGAGGAGTGTCAAGACGTTCAGATTATCGAG.....................................................................................TGTTAGTTACAGGATTACCCCATTCAGCATCGTGGCAGGATCTCAAG...................................................................................................................GATCACATGCGCCGTGCTGGGGATGTTTGTTTCTCCCAAGTTTTCCGTGACGGGAGTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACCACTGGTATAATTGATTATACAAACTATGATGACATGAAATATGCT...............................................................................................................................ATCAAAAAGCTTGATGACTCTGAGTTTCGAAATGCCTTTTCTCGTGCGACAATTCGA...................................................................................GTTAAAGAATATGACCGCAGTCGAAGTCGCAGCCGCAGTCGCAGTCGCTCTTACTCCAGAGGGAAGAGTGTTAGTCGAAGCCGAAGCCGTAGCCGAAGTAGAAGCCGAAGCAAGAGCAAAAG..................................................................................CAAATCTCCTAAAGTTAAGTCTTCAAAGCGCTCAAGATCTCGTTCAAGGTCTGTGTCTTCTCAGTCTCGTTCTGGGTCAAAAGGACGTCCTGTCTCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCCATCAAGGTCCAGATCACCAGCACCAGCT.............................................................................................................................................................................CGTTCAAAACAATTAAGTGAAAGTCCCAAAAGACGCACTCCCAGCAGTAGCCCCAAAAGACGCACTCCAAGCAGAAGCCCAAGCCGGAGTAGGAGCCGTAGCCAAAGTTTGTCCAG...............................................................................GTAAGATTGCTGGAATCATCAGTGATTGAGGGTGCCATCATGCTGTGTTTGAGCAGCCTGGTCCACAGTTGGGAGCCCAAGTGACCGGGAGAGTCTGTTGCTCTGCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E233163" ref_strand="+" ref_description="SGN-E233163 [cLED-6-M6]">
      <seq>ttgagtggataatggtcttgcctgcaactctttttgttgtggagattgggatcatgaagatcacggattctatggtggagctggactggggaaccaactgccacctgaatttggatcaccacctattttttggtagaagcatgttctaacaaagcgaaataaagactagttcattcttttggtatcctgctaattggtctctttgactgctcgaatttaaaatattacatagtctcaatggtgtaacttgcatcgttttatacttgccatattttccactctggattctgccaaattgctactttcattatggtcatgctgaggtggaagtgaaatcaaagcagttgtggaggaaacttgttaagtggcgggactgggatattaaattaagttctttctggaaattttgcagatctccatcaaggtccagatcaccagcaccagctcgttcaaaacaattaagtgaaagtcccaaaagacgcactcccagcagtagccccaaaagacgcactccaagcagaagcccaagccggagtaggagccgtaaccaaagtttgtccaggtaagattgctggaatcatcagtgattgagggtgccatcatgctgtgtttgagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="63873" stop="62319"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63573" g_stop="63530" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63529" i_stop="63444" i_length="86">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63443" g_stop="63042" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="446" r_length="402" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63041" i_stop="62869" i_length="173">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62868" g_stop="62753" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="562" r_length="116" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62752" i_stop="62674" i_length="79">
            <donor d_prob="0.906" d_score="0.98"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62673" g_stop="62619" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="617" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E233163" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E233163" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63573" e_stop="63530"/>
          <exon e_start="63443" e_stop="63042"/>
          <exon e_start="62868" e_stop="62753"/>
          <exon e_start="62673" e_stop="62619"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGTGGATAATGGTCTTGCCTGCAACTCTTTTTGTTGTGGAGGTACGATGTTTTCTAGATGGCAGCTTTGGGTCTTTTTGTGATGTCTCTCTTCTAATGAGCATCGTGAAATGTTCCATGGGTGCTAGATTGGGATCATGAAGATCACGGATTCTATGGTGGAGCTGGACTGGGGAACCAACTGCCACCTGAATTTGGATCACCACCTATTTTTTGGTAGAAGCATGTTCTAACAAAGCGAAATAAAGACTAGTTCATTCTTTTGGTATCCTGCTAATTGGTCTCTTTGACTGCTCGAATTTAAAATATTACATAGTCTCAATGGTGTAACTTGCATTGTTTTATACTTGCCATATTTTCCACTCTGGATTCTGCCAAATTGCTACTTTCATTATGGTCATGCTGAGGTGGAAGTGAAATCAAAGCAGTTGTGGAGGAAACTTGTTAAGTGGCGGGACTGGGATATTAAATTAAGTTCTTTCTGGAAATTTTGCAGATCTCCATCAAGGTCCAGATCACCAGCACCAGCTGTAAGTCAAATCTACATGTTTTAAAGTGAACGGAATAACCCAAAATTCAAATATATTGGGATCATCCGTCTTGTCTGTCTTTTTTTTGTGCTTACCTGGCCTTTTCAAAGTACATTCTCTCTTTTCTCTGTCTACATAATTATTGCTTTGTATTATGACTGGGTTAATTACAGCGTTCAAAACAATTAAGTGAAAGTCCCAAAAGACGCACTCCCAGCAGTAGCCCCAAAAGACGCACTCCAAGCAGAAGCCCAAGCCGGAGTAGGAGCCGTAGCCAAAGTTTGTCCAGGTCTTACTTCTGTGGCTTGTCGTATATCTTTCAATGTTTGACCGTTTCGTTAATTTTTTCTCCTCGCCTCTTTTTATAGGTAAGATTGCTGGAATCATCAGTGATTGAGGGTGCCATCATGCTGTGTTTGAGCA</genome_strand>
        <mrna_strand>TTGAGTGGATAATGGTCTTGCCTGCAACTCTTTTTGTTGTGGAG......................................................................................ATTGGGATCATGAAGATCACGGATTCTATGGTGGAGCTGGACTGGGGAACCAACTGCCACCTGAATTTGGATCACCACCTATTTTTTGGTAGAAGCATGTTCTAACAAAGCGAAATAAAGACTAGTTCATTCTTTTGGTATCCTGCTAATTGGTCTCTTTGACTGCTCGAATTTAAAATATTACATAGTCTCAATGGTGTAACTTGCATCGTTTTATACTTGCCATATTTTCCACTCTGGATTCTGCCAAATTGCTACTTTCATTATGGTCATGCTGAGGTGGAAGTGAAATCAAAGCAGTTGTGGAGGAAACTTGTTAAGTGGCGGGACTGGGATATTAAATTAAGTTCTTTCTGGAAATTTTGCAGATCTCCATCAAGGTCCAGATCACCAGCACCAGCT.............................................................................................................................................................................CGTTCAAAACAATTAAGTGAAAGTCCCAAAAGACGCACTCCCAGCAGTAGCCCCAAAAGACGCACTCCAAGCAGAAGCCCAAGCCGGAGTAGGAGCCGTAACCAAAGTTTGTCCAG...............................................................................GTAAGATTGCTGGAATCATCAGTGATTGAGGGTGCCATCATGCTGTGTTTGAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E577718" ref_strand="+" ref_description="SGN-E577718 [LE15CC08]">
      <seq>cggattctatggtggagctggactggggaaccaactgccacctgaatttggatcaccacctattttttggtagaagcatgttctaacaaagcgaaataaagactagttcattcttttggtatcctgctaattggtctctttgactgctcgaatttaaaatattacatagtctcaatggtgtaacttgcattgttttatacttgccatattttccactctggattctgccaaattgctactttcattatggtcatgctgaggtggaagtgaaatcaaagcagttgtggaggaaacttgttaagtggcgggactgggatattaaattaagttctttctggaaattttgcagatctccatcaaggtccagatcaccagcaccagctgtaagtcaaatctacatgttttaaagtgaacggaataacccaaaattcaaatatattgggatcatccgtcttgtctgtcttttttttgtgcttacctggccttttcaaagtacattctctcttttctctgtctacataattattgctttgtattatgactgggttaattacagcgttcaaaacaattaagtgaaagtcccaaaagacgcactcccagcagtagccccaaaagacgcactccaagcagaagcccaagccggagtaggagccgtagccaaagtttgtccaggtcttacttctgtggcttgtcgtatatctttcaatgttgaccgtttcgttaattttttctcctcgcctctttttataggtaagattgctggaatcatcagcgattgagggtgccatcatgctgtgtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="63724" stop="62323"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63424" g_stop="62623" g_length="802"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="801" r_length="801" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E577718" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>802</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E577718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63424" e_stop="62623"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGATTCTATGGTGGAGCTGGACTGGGGAACCAACTGCCACCTGAATTTGGATCACCACCTATTTTTTGGTAGAAGCATGTTCTAACAAAGCGAAATAAAGACTAGTTCATTCTTTTGGTATCCTGCTAATTGGTCTCTTTGACTGCTCGAATTTAAAATATTACATAGTCTCAATGGTGTAACTTGCATTGTTTTATACTTGCCATATTTTCCACTCTGGATTCTGCCAAATTGCTACTTTCATTATGGTCATGCTGAGGTGGAAGTGAAATCAAAGCAGTTGTGGAGGAAACTTGTTAAGTGGCGGGACTGGGATATTAAATTAAGTTCTTTCTGGAAATTTTGCAGATCTCCATCAAGGTCCAGATCACCAGCACCAGCTGTAAGTCAAATCTACATGTTTTAAAGTGAACGGAATAACCCAAAATTCAAATATATTGGGATCATCCGTCTTGTCTGTCTTTTTTTTGTGCTTACCTGGCCTTTTCAAAGTACATTCTCTCTTTTCTCTGTCTACATAATTATTGCTTTGTATTATGACTGGGTTAATTACAGCGTTCAAAACAATTAAGTGAAAGTCCCAAAAGACGCACTCCCAGCAGTAGCCCCAAAAGACGCACTCCAAGCAGAAGCCCAAGCCGGAGTAGGAGCCGTAGCCAAAGTTTGTCCAGGTCTTACTTCTGTGGCTTGTCGTATATCTTTCAATGTTTGACCGTTTCGTTAATTTTTTCTCCTCGCCTCTTTTTATAGGTAAGATTGCTGGAATCATCAGTGATTGAGGGTGCCATCATGCTGTGTTTG</genome_strand>
        <mrna_strand>CGGATTCTATGGTGGAGCTGGACTGGGGAACCAACTGCCACCTGAATTTGGATCACCACCTATTTTTTGGTAGAAGCATGTTCTAACAAAGCGAAATAAAGACTAGTTCATTCTTTTGGTATCCTGCTAATTGGTCTCTTTGACTGCTCGAATTTAAAATATTACATAGTCTCAATGGTGTAACTTGCATTGTTTTATACTTGCCATATTTTCCACTCTGGATTCTGCCAAATTGCTACTTTCATTATGGTCATGCTGAGGTGGAAGTGAAATCAAAGCAGTTGTGGAGGAAACTTGTTAAGTGGCGGGACTGGGATATTAAATTAAGTTCTTTCTGGAAATTTTGCAGATCTCCATCAAGGTCCAGATCACCAGCACCAGCTGTAAGTCAAATCTACATGTTTTAAAGTGAACGGAATAACCCAAAATTCAAATATATTGGGATCATCCGTCTTGTCTGTCTTTTTTTTGTGCTTACCTGGCCTTTTCAAAGTACATTCTCTCTTTTCTCTGTCTACATAATTATTGCTTTGTATTATGACTGGGTTAATTACAGCGTTCAAAACAATTAAGTGAAAGTCCCAAAAGACGCACTCCCAGCAGTAGCCCCAAAAGACGCACTCCAAGCAGAAGCCCAAGCCGGAGTAGGAGCCGTAGCCAAAGTTTGTCCAGGTCTTACTTCTGTGGCTTGTCGTATATCTTTCAATG-TTGACCGTTTCGTTAATTTTTTCTCCTCGCCTCTTTTTATAGGTAAGATTGCTGGAATCATCAGCGATTGAGGGTGCCATCATGCTGTGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E296000" ref_strand="+" ref_description="SGN-E296000 [cLET-27-K2]">
      <seq>acaaactatgatgacatgaaatatgctatcaaaaagcttgatgactctgagtttcgaaatgccttttctcgtgcgacaattcgagttaaagaatatgaccgcagtcgaagtcgcagccgcagtcgcagtcgctcttactccagagggaagagtgttagtcgaagccgaagccgtagccgaagtagaagccgaagcaagagcaaaagcaaatctcctaaagttaagtcttcaaagcgctcaagatctcggtcaaggtctgtgtcttctcagtctcggtctgggtccaaaaggacgtcctgtttcaagatttccatcaaggtccagatcaccagcaccagctcgttcaaaacaattaagtgaaagtcccaaaagacgcactcccagcagtagccccaaaagacgcactccaagcagaagcccaagccggagtaggagcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="65545" stop="62472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65245" g_stop="65219" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65218" i_stop="65092" i_length="127">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65091" g_stop="65035" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="84" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65034" i_stop="64952" i_length="83">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.791" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64951" g_stop="64830" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="206" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64829" i_stop="64748" i_length="82">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.433" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64747" g_stop="64649" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="306" r_length="100" r_score="0.949"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64648" i_stop="63076" i_length="1573">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.961" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="63075" g_stop="63042" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="340" r_length="34" r_score="0.971"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="63041" i_stop="62869" i_length="173">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="62868" g_stop="62772" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="437" r_length="97" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E296000" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296000" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65245" e_stop="65219"/>
          <exon e_start="65091" e_stop="65035"/>
          <exon e_start="64951" e_stop="64830"/>
          <exon e_start="64747" e_stop="64649"/>
          <exon e_start="63075" e_stop="63042"/>
          <exon e_start="62868" e_stop="62772"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAACTATGATGACATGAAATATGCTGTAAGCCATCTTCTCTTTTCTCCTTCCCTTTAGTTGGGTTTCCTTCACCTTGATGCTGTTGACAATATTTGATTTTTCCTTTATACAACTAAGAGGTGCAGCTAATATTATCCTTTCATGTGTATAGATCAAAAAGCTTGATGACTCTGAGTTTCGAAATGCCTTTTCTCGTGCGACAATTCGAGTATGACACAAACAATTTTCAATTTCTTCAATTATCGTGTTGATGCCGTCATTTGCTATTCTCAAAACCTCCACCTTCTGTAGGTTAAAGAATATGACCGCAGTCGAAGTCGCAGCCGCAGTCGCAGTCGCTCTTACTCCAGAGGGAAGAGTGTTAGTCGAAGCCGAAGCCGTAGCCGAAGTAGAAGCCGAAGCAAGAGCAAAAGGTCTAACACATTACACATATATGTCTGGACTAGTGGTTTTACTTTAATGCAAATAGGGCCTTATTAATATTTGTCTTAGCAGCAAATCTCCTAAAGTTAAGTCTTCAAAGCGCTCAAGATCTCGTTCAAGGTCTGTGTCTTCTCAGTCTCGTTCTGGGT-CAAAAGGACGTCCTGTCTCAAGGTAATATTCTGCTTTCTCTTTCTGTTTTTGTTTCGGGATGGGTATAAAAGCATTACATAGTACAAGGTTAATATTTGCATAAACTGCAAATCTTTCATTCTTTATTATCTTATTAGAGTTCTTCAATTTCTCAAGTTGTTCTTCACACTCAAAGTATTGTTGATTTAAGATCTTTAAATCTAAAATGCTCTTGCAGTTGATTACTTTGCCTTTTATCTTCTATGTTATTGTTAGTTTGATGTGCTCACTGCAAAGTTCACATCAAAATGGTGTAGACTCCTGGGTGCTTTAGTCTTCTTTGTTTAACTTGTCCTTGATGCTTTCCCCTTGGTTCTTTCTAAACAATATAGCAATGAGAAGCTATTAGTCTCATATATCATGCATAAAACTCCAAATCCAATCTTATTTGTTTTTTATTATCTTGTCCCTCTAACACAATCTTGTGGTAATTTGTCATATGTGGGGGTACAACGGATTTATGGTAAGTTGTAGAATACAATTTTCCAAAGGTTGCATTTTCTGGCGGCAATCTAGTTGGTAATGTGTAGTTCTGCATACTCTAGTGGGACAACGTGTAGTTACATTTATGTTATTTTCTTCTGTTTCAGGACGGATTTTAAGGGGTTTAGAACTTGCAATGACGTTATCAAACCATTAGAATCAACCAAATGATTGAAAACTATGGTTTCTCACTTTTTTTCTCCATTTTTTCCCCCTATGAAACAAGATTTCATATTCATTTGTTTCCTGCTATTTCAGGATTTTCCAACTATGTTTGCTGATCAATGTGTAACCATTTAGTAAAGACTGGTCATTAGATAGGTTCATGTCTGTTGAAACAAAATTAGAAATTGGAAAGGTTTAGGTCTGAGCAATACAGAAGTAAAGTTTAGTGTTTGAAGGGGAGACTTGGTTCATTTACTTAAGTCATTTTGGAACTGTATTCTAGGGGAAACATACTGCCTTATCAAGGTGTCGTCTTTTATCGTTTCTTTTATAAGTATGAAAAGTCACCTTGTTTGTTTTTCTAGATTTTGGATATGTGCGGCGGTTTGTGGATTTGCATATTAGGATCTTGAGTGGATAATGGTCTTGCCTGCAACTCTTTTTGTTGTGGAGGTACGATGTTTTCTAGATGGCAGCTTTGGGTCTTTTTGTGATGTCTCTCTTCTAATGAGCATCGTGAAATGTTCCATGGGTGCTAGATTGGGATCATGAAGATCACGGATTCTATGGTGGAGCTGGACTGGGGAACCAACTGCCACCTGAATTTGGATCACCACCTATTTTTTGGTAGAAGCATGTTCTAACAAAGCGAAATAAAGACTAGTTCATTCTTTTGGTATCCTGCTAATTGGTCTCTTTGACTGCTCGAATTTAAAATATTACATAGTCTCAATGGTGTAACTTGCATTGTTTTATACTTGCCATATTTTCCACTCTGGATTCTGCCAAATTGCTACTTTCATTATGGTCATGCTGAGGTGGAAGTGAAATCAAAGCAGTTGTGGAGGAAACTTGTTAAGTGGCGGGACTGGGATATTAAATTAAGTTCTTTCTGGAAATTTTGCAGATCTCCATCAAGGTCCAGATCACCAGCACCAGCTGTAAGTCAAATCTACATGTTTTAAAGTGAACGGAATAACCCAAAATTCAAATATATTGGGATCATCCGTCTTGTCTGTCTTTTTTTTGTGCTTACCTGGCCTTTTCAAAGTACATTCTCTCTTTTCTCTGTCTACATAATTATTGCTTTGTATTATGACTGGGTTAATTACAGCGTTCAAAACAATTAAGTGAAAGTCCCAAAAGACGCACTCCCAGCAGTAGCCCCAAAAGACGCACTCCAAGCAGAAGCCCAAGCCGGAGTAGGAGCC</genome_strand>
        <mrna_strand>ACAAACTATGATGACATGAAATATGCT...............................................................................................................................ATCAAAAAGCTTGATGACTCTGAGTTTCGAAATGCCTTTTCTCGTGCGACAATTCGA...................................................................................GTTAAAGAATATGACCGCAGTCGAAGTCGCAGCCGCAGTCGCAGTCGCTCTTACTCCAGAGGGAAGAGTGTTAGTCGAAGCCGAAGCCGTAGCCGAAGTAGAAGCCGAAGCAAGAGCAAAAG..................................................................................CAAATCTCCTAAAGTTAAGTCTTCAAAGCGCTCAAGATCTCGGTCAAGGTCTGTGTCTTCTCAGTCTCGGTCTGGGTCCAAAAGGACGTCCTGTTTCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCCATCAAGGTCCAGATCACCAGCACCAGCT.............................................................................................................................................................................CGTTCAAAACAATTAAGTGAAAGTCCCAAAAGACGCACTCCCAGCAGTAGCCCCAAAAGACGCACTCCAAGCAGAAGCCCAAGCCGGAGTAGGAGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E487372" ref_strand="+" ref_description="SGN-E487372 [cSTE-25-G8]">
      <seq>catcatcaaatgatcgttatggtggcggcggcggtggtggtggcggcggccgtggtcagcgtggtggaggagtgtccagacgttctgattttcgagtgttagttacaggattaccccattcagcatcgtggcaggatctcaaggatcacatgcgtcgtgctggggatgtttgtttctcccaagttttccgtgatgggagtggcaccactggtataattgattatacaaactatgatgacatgaaatatgctatcaaaaagcttgatgactctgagtttcggaatgccttttctcgtgcgacaattcgagttaaggaatatgaccgcagtcgaagccgcagccgcagccgcagtcggagccgttcttactccaaaggaaagagtgttagtcgaagccgtagccgtagccgtagccgaagcaaaagtcgtagcaagagcaaaagcaaatctcctaaagttaagtcttcaaagcgctcaagatctcgttcaaggtctgtgtcttctcggtctcgttctgggtcaaaaggacgtcctgtctcaagatctccatcaaggtccagatcgccagcaccagctcgttcaaaaccgttgagcaaaagtcccaaaagacgcactcccagcagtagccccaaaaggcgcactccaagcagaagcccaagccggagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="67726" stop="62479"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67406" g_stop="67343" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="96" r_length="64" r_score="0.922"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67342" i_stop="67258" i_length="85">
            <donor d_prob="0.982" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67257" g_stop="67211" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="143" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67210" i_stop="67096" i_length="115">
            <donor d_prob="0.611" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67095" g_stop="67038" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="201" r_length="58" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67037" i_stop="65269" i_length="1769">
            <donor d_prob="0.732" d_score="0.96"/>
            <acceptor a_prob="0.949" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65268" g_stop="65219" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="251" r_length="50" r_score="0.980"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="65218" i_stop="65092" i_length="127">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.963" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="65091" g_stop="65035" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="308" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="65034" i_stop="64952" i_length="83">
            <donor d_prob="0.978" d_score="0.98"/>
            <acceptor a_prob="0.791" a_score="0.81"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="64951" g_stop="64830" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="436" r_length="128" r_score="0.770"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="64829" i_stop="64754" i_length="76">
            <donor d_prob="0.982" d_score="0.78"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="64753" g_stop="64649" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="541" r_length="105" r_score="0.962"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="64648" i_stop="63076" i_length="1573">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.961" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="63075" g_stop="63042" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="575" r_length="34" r_score="0.971"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="63041" i_stop="62869" i_length="173">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="62868" g_stop="62779" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="576" r_stop="665" r_length="90" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E487372" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E487372" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67406" e_stop="67343"/>
          <exon e_start="67257" e_stop="67211"/>
          <exon e_start="67095" e_stop="67038"/>
          <exon e_start="65268" e_stop="65219"/>
          <exon e_start="65091" e_stop="65035"/>
          <exon e_start="64951" e_stop="64830"/>
          <exon e_start="64753" e_stop="64649"/>
          <exon e_start="63075" e_stop="63042"/>
          <exon e_start="62868" e_stop="62779"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGGTGGCGGTGGCGGCCGTGGTCAGCGTGGTGGAGGAGTGTCAAGACGTTCAGATTATCGAGGTGTGTCTTATGGGTTATGTGCTTTCTACATTGGAATACATGTTATATCTTTTCTTATGTTCTGATATCTTTTGTTGTATTTCAGTGTTAGTTACAGGATTACCCCATTCAGCATCGTGGCAGGATCTCAAGGTGAGTCGGTGTCTTTGAGTTGTGAATCATAGGGACTTACCAAGAAAGTGATCCTCCTTTCCCTCAAAATTATTCTGTAATTTCTGAGTATTGTTAACTTTTATTTCTTATGTAGGATCACATGCGCCGTGCTGGGGATGTTTGTTTCTCCCAAGTTTTCCGTGACGGGAGTGGTAAGATTTAAACAGCTAATGGCAGATCTACTTTTTCTCTTTGAACTGGTATAATGGTTTAACTGTCAAGCACACGGAACTCCTCCATGTGGAATGGCAACCTACAATGATACACCAAGCAATAAGTCTTTGATGTGAGCTTACAATGGTACTCACTAATTGTACTGATGATTTGGAGAAAGACCTGTATACAAACTGTATATCGAAAGATGGAGAATTCTACTGTAACACACTATTCCTCTTCTTGCTCATCGTGGTTGACCTGTCATAGGAATAGGTTAAGGATACTTTTCTTTATATCATAGTGTAAATTAATGAGTTTATAATCAAGTATTATATTAAGGGTGCAAGTCTGTCATTGTTAATTATTACTGTCATTCTTTTTATATTTAGAGCTTTGGTAATAACTGTGGGTTCATACCTGGGATATCTGATAAATTTGGAAAAATGCATAGGATCTATGACTCATAATTTGGGTTTTCAGTATAAGCTGATAAGTCTTTCTTTGTCTAGAAAAATGTTATATTGAAGGAAAAATAATATAGGAGAGATCATCTCTTCAGAAAATGTAGTGGAAATAATCATCGACATATTGATAACAATATTACTTGATGAAAACAGGATAAGGTCTTGACAAACTGGAGGGGAAAATATGCAGGTGGAGCAAAAAATTGGGAGGAAAGATGGAAAACTAAATATAAAAGAAACACTGAGTAGGAAAGAAGCACAAGTTAGATGTGTTATGGTTCCTCGAGGGTAGGGTGGGGTGGGGAGACCAACGTTGCTGCAAGCTTGAGGTCGGGGTAGGTCAAAAACCTAGAGGTGTTGGGGCATCATTGGTTGGTGGCTGGGTGAGGGCAAGATAAGTTCTGCTCTCAGGAAGAAATGGTGAAAAAGATGAAGAGAGATGTGTATTTTTGTTGTCTTCCCATCTAAGAATGTCTCGCCCTTGCCCATCTATTGTCCTCTTTTGCTCTTCTAATACAATTTGTTAATTTGGATTATGATCCTGTTATTTATCCCATTTTTTTCTGAGGACTATCATCCCTTGAGACAATTTAAAAGCTGGTTATCGACTGTGCTGCCTAATGTTTGGTGGTTGGTTGGATAAATTTGTTTAGACTAATCTGATGCACCTGATGACCCCATTAACTTGTATGATGTTTTGGATTTCTTTCCCCGTTTCTTTTTGAATTTTATTTTGGTACAACTGTTTGAAGTCTTTAACTAGATGCTAACCCAATGTGCCAAAATGTTCCCACGCTCTATGTTGATGACTGCATATGCAATTTTCTCCTCTATGATTCATTTCTACGTTTTCTGATCACGTGCAGAACTTGTCATATTGGAGGGTCCACTTTTGTTTTTTAAGGGAATGAAAATTAAGAGGAAGCAAATGATATTTGATGTAGGCCGAGAAAACTTGTTTTTTGAATCTTTTTATTGATATTTTTTGATTCTTTTTTGGTTTCAGTAAACATTTTGGTGCGATTTGCAAAAGACAACTTTTGTTTTAAGCAACAGTTGTTTTTAGTTTCCTGTAAAACTTCACCATAAATTTTTCTAATTCAAGTTTACCATAAACTATTGTGATCTAACTATTCCTAGAGTTTTCTGAATCCATAATGGCACACAAAATCGCTCTTTGCTTTAACTTGTTAGTGCACAATGCTTATTTTTACCCTGTAGGAAGCATCTTGATCTTCATATTACTGTCATTTCTGGTCCACAAGTTATTCTGATATCAACAAATTTGCTTGGACTTTCAGGAACCACTGGTATAATTGATTATACAAACTATGATGACATGAAATATGCTGTAAGCCATCTTCTCTTTTCTCCTTCCCTTTAGTTGGGTTTCCTTCACCTTGATGCTGTTGACAATATTTGATTTTTCCTTTATACAACTAAGAGGTGCAGCTAATATTATCCTTTCATGTGTATAGATCAAAAAGCTTGATGACTCTGAGTTTCGAAATGCCTTTTCTCGTGCGACAATTCGAGTATGACACAAACAATTTTCAATTTCTTCAATTATCGTGTTGATGCCGTCATTTGCTATTCTCAAAACCTCCACCTTCTGTAGGTTAAAGAATATGACCGCAGTCGAAGTCGCAGCCGCAGTCGCAGTC---G-C--TCTTACTCCAGAGGGAAGAGTGTTAGTCGAAGCCGAAGCCGTAGCCGAAGTAGAAGCCGAAGCAAGAGCAAAAGGTCTAACACATTACACATATATGTCTGGACTAGTGGTTTTACTTTAATGCAAATAGGGCCTTATTAATATTTGTCTTAGCAGCAAATCTCCTAAAGTTAAGTCTTCAAAGCGCTCAAGATCTCGTTCAAGGTCTGTGTCTTCTCAGTCTCGTTCTGGGTCAAAAGGACGTCCTGTCTCAAGGTAATATTCTGCTTTCTCTTTCTGTTTTTGTTTCGGGATGGGTATAAAAGCATTACATAGTACAAGGTTAATATTTGCATAAACTGCAAATCTTTCATTCTTTATTATCTTATTAGAGTTCTTCAATTTCTCAAGTTGTTCTTCACACTCAAAGTATTGTTGATTTAAGATCTTTAAATCTAAAATGCTCTTGCAGTTGATTACTTTGCCTTTTATCTTCTATGTTATTGTTAGTTTGATGTGCTCACTGCAAAGTTCACATCAAAATGGTGTAGACTCCTGGGTGCTTTAGTCTTCTTTGTTTAACTTGTCCTTGATGCTTTCCCCTTGGTTCTTTCTAAACAATATAGCAATGAGAAGCTATTAGTCTCATATATCATGCATAAAACTCCAAATCCAATCTTATTTGTTTTTTATTATCTTGTCCCTCTAACACAATCTTGTGGTAATTTGTCATATGTGGGGGTACAACGGATTTATGGTAAGTTGTAGAATACAATTTTCCAAAGGTTGCATTTTCTGGCGGCAATCTAGTTGGTAATGTGTAGTTCTGCATACTCTAGTGGGACAACGTGTAGTTACATTTATGTTATTTTCTTCTGTTTCAGGACGGATTTTAAGGGGTTTAGAACTTGCAATGACGTTATCAAACCATTAGAATCAACCAAATGATTGAAAACTATGGTTTCTCACTTTTTTTCTCCATTTTTTCCCCCTATGAAACAAGATTTCATATTCATTTGTTTCCTGCTATTTCAGGATTTTCCAACTATGTTTGCTGATCAATGTGTAACCATTTAGTAAAGACTGGTCATTAGATAGGTTCATGTCTGTTGAAACAAAATTAGAAATTGGAAAGGTTTAGGTCTGAGCAATACAGAAGTAAAGTTTAGTGTTTGAAGGGGAGACTTGGTTCATTTACTTAAGTCATTTTGGAACTGTATTCTAGGGGAAACATACTGCCTTATCAAGGTGTCGTCTTTTATCGTTTCTTTTATAAGTATGAAAAGTCACCTTGTTTGTTTTTCTAGATTTTGGATATGTGCGGCGGTTTGTGGATTTGCATATTAGGATCTTGAGTGGATAATGGTCTTGCCTGCAACTCTTTTTGTTGTGGAGGTACGATGTTTTCTAGATGGCAGCTTTGGGTCTTTTTGTGATGTCTCTCTTCTAATGAGCATCGTGAAATGTTCCATGGGTGCTAGATTGGGATCATGAAGATCACGGATTCTATGGTGGAGCTGGACTGGGGAACCAACTGCCACCTGAATTTGGATCACCACCTATTTTTTGGTAGAAGCATGTTCTAACAAAGCGAAATAAAGACTAGTTCATTCTTTTGGTATCCTGCTAATTGGTCTCTTTGACTGCTCGAATTTAAAATATTACATAGTCTCAATGGTGTAACTTGCATTGTTTTATACTTGCCATATTTTCCACTCTGGATTCTGCCAAATTGCTACTTTCATTATGGTCATGCTGAGGTGGAAGTGAAATCAAAGCAGTTGTGGAGGAAACTTGTTAAGTGGCGGGACTGGGATATTAAATTAAGTTCTTTCTGGAAATTTTGCAGATCTCCATCAAGGTCCAGATCACCAGCACCAGCTGTAAGTCAAATCTACATGTTTTAAAGTGAACGGAATAACCCAAAATTCAAATATATTGGGATCATCCGTCTTGTCTGTCTTTTTTTTGTGCTTACCTGGCCTTTTCAAAGTACATTCTCTCTTTTCTCTGTCTACATAATTATTGCTTTGTATTATGACTGGGTTAATTACAGCGTTCAAAACAATTAAGTGAAAGTCCCAAAAGACGCACTCCCAGCAGTAGCCCCAAAAGACGCACTCCAAGCAGAAGCCCAAGCCGGAGT</genome_strand>
        <mrna_strand>GGTGGTGGTGGCGGCGGCCGTGGTCAGCGTGGTGGAGGAGTGTCCAGACGTTCTGATTTTCGAG.....................................................................................TGTTAGTTACAGGATTACCCCATTCAGCATCGTGGCAGGATCTCAAG...................................................................................................................GATCACATGCGTCGTGCTGGGGATGTTTGTTTCTCCCAAGTTTTCCGTGATGGGAGTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACCACTGGTATAATTGATTATACAAACTATGATGACATGAAATATGCT...............................................................................................................................ATCAAAAAGCTTGATGACTCTGAGTTTCGGAATGCCTTTTCTCGTGCGACAATTCGA...................................................................................GTTAAGGAATATGACCGCAGTCGAAGCCGCAGCCGCAGCCGCAGTCGGAGCCGTTCTTACTCCAAAGGAAAGAGTGTTAGTCGAAGCCGTAGCCGTAGCCGTAGCCGAAGCAAAAGTCGTAGCAAGAG............................................................................CAAAAGCAAATCTCCTAAAGTTAAGTCTTCAAAGCGCTCAAGATCTCGTTCAAGGTCTGTGTCTTCTCGGTCTCGTTCTGGGTCAAAAGGACGTCCTGTCTCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCCATCAAGGTCCAGATCGCCAGCACCAGCT.............................................................................................................................................................................CGTTCAAAACCGTTGAGCAAAAGTCCCAAAAGACGCACTCCCAGCAGTAGCCCCAAAAGGCGCACTCCAAGCAGAAGCCCAAGCCGGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E233047" ref_strand="+" ref_description="SGN-E233047 [cLED-6-M7]">
      <seq>ttgagtggataatggtcttgcctgcaactctttttgttgtggagattgggatcatgaagatcacggattctatggtggagctggactggggaaccaactgccacctgaatttggatcaccacctattttttggtagaagcatgttctaacaaagcgaaataaagactagttcattcttttggtatcctgctaattggtctctttgactgctcgaatttaaaatattacatagtctcaatggtgtaacttgcatcgttttatacttgccatattttccactctggattctgccaaattgctactttcattatggtcatgctgaggtggaagtgaaatcaaagcagttgtggaggaaacttgttaagtggcgggactgggatattaaattaagttctttctggaaattttgcagatctccatcaaggtccagatcaccagcaccagctcgttcaaaacaattaagtgaaagtcccaaaagacgcactcccagcagtagccccaaaagacgcactccaagcagaagcccaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="63873" stop="62485"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63573" g_stop="63530" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63529" i_stop="63444" i_length="86">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63443" g_stop="63042" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="446" r_length="402" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63041" i_stop="62869" i_length="173">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62868" g_stop="62785" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="530" r_length="84" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E233047" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E233047" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63573" e_stop="63530"/>
          <exon e_start="63443" e_stop="63042"/>
          <exon e_start="62868" e_stop="62785"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGTGGATAATGGTCTTGCCTGCAACTCTTTTTGTTGTGGAGGTACGATGTTTTCTAGATGGCAGCTTTGGGTCTTTTTGTGATGTCTCTCTTCTAATGAGCATCGTGAAATGTTCCATGGGTGCTAGATTGGGATCATGAAGATCACGGATTCTATGGTGGAGCTGGACTGGGGAACCAACTGCCACCTGAATTTGGATCACCACCTATTTTTTGGTAGAAGCATGTTCTAACAAAGCGAAATAAAGACTAGTTCATTCTTTTGGTATCCTGCTAATTGGTCTCTTTGACTGCTCGAATTTAAAATATTACATAGTCTCAATGGTGTAACTTGCATTGTTTTATACTTGCCATATTTTCCACTCTGGATTCTGCCAAATTGCTACTTTCATTATGGTCATGCTGAGGTGGAAGTGAAATCAAAGCAGTTGTGGAGGAAACTTGTTAAGTGGCGGGACTGGGATATTAAATTAAGTTCTTTCTGGAAATTTTGCAGATCTCCATCAAGGTCCAGATCACCAGCACCAGCTGTAAGTCAAATCTACATGTTTTAAAGTGAACGGAATAACCCAAAATTCAAATATATTGGGATCATCCGTCTTGTCTGTCTTTTTTTTGTGCTTACCTGGCCTTTTCAAAGTACATTCTCTCTTTTCTCTGTCTACATAATTATTGCTTTGTATTATGACTGGGTTAATTACAGCGTTCAAAACAATTAAGTGAAAGTCCCAAAAGACGCACTCCCAGCAGTAGCCCCAAAAGACGCACTCCAAGCAGAAGCCCAAGC</genome_strand>
        <mrna_strand>TTGAGTGGATAATGGTCTTGCCTGCAACTCTTTTTGTTGTGGAG......................................................................................ATTGGGATCATGAAGATCACGGATTCTATGGTGGAGCTGGACTGGGGAACCAACTGCCACCTGAATTTGGATCACCACCTATTTTTTGGTAGAAGCATGTTCTAACAAAGCGAAATAAAGACTAGTTCATTCTTTTGGTATCCTGCTAATTGGTCTCTTTGACTGCTCGAATTTAAAATATTACATAGTCTCAATGGTGTAACTTGCATCGTTTTATACTTGCCATATTTTCCACTCTGGATTCTGCCAAATTGCTACTTTCATTATGGTCATGCTGAGGTGGAAGTGAAATCAAAGCAGTTGTGGAGGAAACTTGTTAAGTGGCGGGACTGGGATATTAAATTAAGTTCTTTCTGGAAATTTTGCAGATCTCCATCAAGGTCCAGATCACCAGCACCAGCT.............................................................................................................................................................................CGTTCAAAACAATTAAGTGAAAGTCCCAAAAGACGCACTCCCAGCAGTAGCCCCAAAAGACGCACTCCAAGCAGAAGCCCAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E726353" ref_strand="+" ref_description="SGN-E726353 [LA11CC11]">
      <seq>cacatattgagctgaaaattccaccaagaccccctggttatgcttttgttgagtttgaagaggctcgtgatgctgaagatgctattcgtggtcgtgatggctatgattttgatgggcaccgtctgcgggttgagcttgcacatggcgggcgtggtaactcatcatcaaatgatcgttatggtggtggcggtggcggccgtggtcagcgtggtggaggagtgtcaagacgttcagattatcgagtgttagttacaggattaccccattcagcatcgtggcaggatctcaaggatcacatgcgccgtgctggggatgtttgtttctcccaagttttccgtgacgggagtggaaccactggtataattgattatacaaactatgatgacatgaaatatgctatcaaaaagcttgatgactctgagtttcgaaatgccttttctcgtgcgacaattcgagttaaagaatatgaccgcagtcgaagtcgcagccgcagtcgcagtcgcagtcgctcttactccagagggaagagtgttagtcgaagccgaagccgtagccgaagtagaagccgaagcaagagcaaaagcaaatctcctaaagttaagtcttcaaagcgctcaagatctcgttcaaggtctgtgtcttctcagtctcgttctgggtcaaaaggacgtcctgtctcaagatctccatcaaggtccagatcaccagcaccagctcgttcaaaacaattaagtgaaagtcccaaaagacgcactcccagcagtagccccaaaagacgcactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="68082" stop="62502"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67782" g_stop="67730" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67729" i_stop="67628" i_length="102">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67627" g_stop="67553" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="128" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67552" i_stop="67458" i_length="95">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67457" g_stop="67343" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="243" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67342" i_stop="67258" i_length="85">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67257" g_stop="67211" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="290" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67210" i_stop="67096" i_length="115">
            <donor d_prob="0.611" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67095" g_stop="67038" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="348" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67037" i_stop="65269" i_length="1769">
            <donor d_prob="0.732" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="65268" g_stop="65219" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="398" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="65218" i_stop="65092" i_length="127">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="65091" g_stop="65035" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="455" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="65034" i_stop="64952" i_length="83">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.791" a_score="0.73"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="64951" g_stop="64830" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="583" r_length="128" r_score="0.902"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="64829" i_stop="64748" i_length="82">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.433" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="64747" g_stop="64649" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="584" r_stop="682" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="64648" i_stop="63076" i_length="1573">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="63075" g_stop="63042" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="683" r_stop="716" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="63041" i_stop="62869" i_length="173">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="62868" g_stop="62802" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="717" r_stop="783" r_length="67" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E726353" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>777</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726353" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67782" e_stop="67730"/>
          <exon e_start="67627" e_stop="67553"/>
          <exon e_start="67457" e_stop="67343"/>
          <exon e_start="67257" e_stop="67211"/>
          <exon e_start="67095" e_stop="67038"/>
          <exon e_start="65268" e_stop="65219"/>
          <exon e_start="65091" e_stop="65035"/>
          <exon e_start="64951" e_stop="64830"/>
          <exon e_start="64747" e_stop="64649"/>
          <exon e_start="63075" e_stop="63042"/>
          <exon e_start="62868" e_stop="62802"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACATATTGAGCTGAAAATTCCACCAAGACCCCCTGGTTATGCTTTTGTTGAGGTGAGTTTGAGCTGCCTTGGTTCTGATGGATTTCATTAGATCAGCCTGCTATGCGCCTTTTAAAGCTATTCTGACCTTTATATTGGCCAAAAACTATAACAGTTTGAAGAGGCTCGTGATGCTGAAGATGCTATTCGTGGTCGTGATGGCTATGATTTTGATGGGCACCGTCTGCGGGTCGGTCAAACTTATAGTTAGCGTATAGTTTACACAAGGTTACTAGTTTTTGCCTTGTTGGATGTTGAATCTATTACAATTGCTCATACTGGCAGGTTGAGCTTGCACATGGCGGGCGTGGTAACTCATCATCAAATGATCGTTATGGTGGTGGCGGTGGCGGCCGTGGTCAGCGTGGTGGAGGAGTGTCAAGACGTTCAGATTATCGAGGTGTGTCTTATGGGTTATGTGCTTTCTACATTGGAATACATGTTATATCTTTTCTTATGTTCTGATATCTTTTGTTGTATTTCAGTGTTAGTTACAGGATTACCCCATTCAGCATCGTGGCAGGATCTCAAGGTGAGTCGGTGTCTTTGAGTTGTGAATCATAGGGACTTACCAAGAAAGTGATCCTCCTTTCCCTCAAAATTATTCTGTAATTTCTGAGTATTGTTAACTTTTATTTCTTATGTAGGATCACATGCGCCGTGCTGGGGATGTTTGTTTCTCCCAAGTTTTCCGTGACGGGAGTGGTAAGATTTAAACAGCTAATGGCAGATCTACTTTTTCTCTTTGAACTGGTATAATGGTTTAACTGTCAAGCACACGGAACTCCTCCATGTGGAATGGCAACCTACAATGATACACCAAGCAATAAGTCTTTGATGTGAGCTTACAATGGTACTCACTAATTGTACTGATGATTTGGAGAAAGACCTGTATACAAACTGTATATCGAAAGATGGAGAATTCTACTGTAACACACTATTCCTCTTCTTGCTCATCGTGGTTGACCTGTCATAGGAATAGGTTAAGGATACTTTTCTTTATATCATAGTGTAAATTAATGAGTTTATAATCAAGTATTATATTAAGGGTGCAAGTCTGTCATTGTTAATTATTACTGTCATTCTTTTTATATTTAGAGCTTTGGTAATAACTGTGGGTTCATACCTGGGATATCTGATAAATTTGGAAAAATGCATAGGATCTATGACTCATAATTTGGGTTTTCAGTATAAGCTGATAAGTCTTTCTTTGTCTAGAAAAATGTTATATTGAAGGAAAAATAATATAGGAGAGATCATCTCTTCAGAAAATGTAGTGGAAATAATCATCGACATATTGATAACAATATTACTTGATGAAAACAGGATAAGGTCTTGACAAACTGGAGGGGAAAATATGCAGGTGGAGCAAAAAATTGGGAGGAAAGATGGAAAACTAAATATAAAAGAAACACTGAGTAGGAAAGAAGCACAAGTTAGATGTGTTATGGTTCCTCGAGGGTAGGGTGGGGTGGGGAGACCAACGTTGCTGCAAGCTTGAGGTCGGGGTAGGTCAAAAACCTAGAGGTGTTGGGGCATCATTGGTTGGTGGCTGGGTGAGGGCAAGATAAGTTCTGCTCTCAGGAAGAAATGGTGAAAAAGATGAAGAGAGATGTGTATTTTTGTTGTCTTCCCATCTAAGAATGTCTCGCCCTTGCCCATCTATTGTCCTCTTTTGCTCTTCTAATACAATTTGTTAATTTGGATTATGATCCTGTTATTTATCCCATTTTTTTCTGAGGACTATCATCCCTTGAGACAATTTAAAAGCTGGTTATCGACTGTGCTGCCTAATGTTTGGTGGTTGGTTGGATAAATTTGTTTAGACTAATCTGATGCACCTGATGACCCCATTAACTTGTATGATGTTTTGGATTTCTTTCCCCGTTTCTTTTTGAATTTTATTTTGGTACAACTGTTTGAAGTCTTTAACTAGATGCTAACCCAATGTGCCAAAATGTTCCCACGCTCTATGTTGATGACTGCATATGCAATTTTCTCCTCTATGATTCATTTCTACGTTTTCTGATCACGTGCAGAACTTGTCATATTGGAGGGTCCACTTTTGTTTTTTAAGGGAATGAAAATTAAGAGGAAGCAAATGATATTTGATGTAGGCCGAGAAAACTTGTTTTTTGAATCTTTTTATTGATATTTTTTGATTCTTTTTTGGTTTCAGTAAACATTTTGGTGCGATTTGCAAAAGACAACTTTTGTTTTAAGCAACAGTTGTTTTTAGTTTCCTGTAAAACTTCACCATAAATTTTTCTAATTCAAGTTTACCATAAACTATTGTGATCTAACTATTCCTAGAGTTTTCTGAATCCATAATGGCACACAAAATCGCTCTTTGCTTTAACTTGTTAGTGCACAATGCTTATTTTTACCCTGTAGGAAGCATCTTGATCTTCATATTACTGTCATTTCTGGTCCACAAGTTATTCTGATATCAACAAATTTGCTTGGACTTTCAGGAACCACTGGTATAATTGATTATACAAACTATGATGACATGAAATATGCTGTAAGCCATCTTCTCTTTTCTCCTTCCCTTTAGTTGGGTTTCCTTCACCTTGATGCTGTTGACAATATTTGATTTTTCCTTTATACAACTAAGAGGTGCAGCTAATATTATCCTTTCATGTGTATAGATCAAAAAGCTTGATGACTCTGAGTTTCGAAATGCCTTTTCTCGTGCGACAATTCGAGTATGACACAAACAATTTTCAATTTCTTCAATTATCGTGTTGATGCCGTCATTTGCTATTCTCAAAACCTCCACCTTCTGTAGGTTAAAGAATATGACCGCAGTCGAAGTCGCA---GC---CGCAGTCGCAGTCGCTCTTACTCCAGAGGGAAGAGTGTTAGTCGAAGCCGAAGCCGTAGCCGAAGTAGAAGCCGAAGCAAGAGCAAAAGGTCTAACACATTACACATATATGTCTGGACTAGTGGTTTTACTTTAATGCAAATAGGGCCTTATTAATATTTGTCTTAGCAGCAAATCTCCTAAAGTTAAGTCTTCAAAGCGCTCAAGATCTCGTTCAAGGTCTGTGTCTTCTCAGTCTCGTTCTGGGTCAAAAGGACGTCCTGTCTCAAGGTAATATTCTGCTTTCTCTTTCTGTTTTTGTTTCGGGATGGGTATAAAAGCATTACATAGTACAAGGTTAATATTTGCATAAACTGCAAATCTTTCATTCTTTATTATCTTATTAGAGTTCTTCAATTTCTCAAGTTGTTCTTCACACTCAAAGTATTGTTGATTTAAGATCTTTAAATCTAAAATGCTCTTGCAGTTGATTACTTTGCCTTTTATCTTCTATGTTATTGTTAGTTTGATGTGCTCACTGCAAAGTTCACATCAAAATGGTGTAGACTCCTGGGTGCTTTAGTCTTCTTTGTTTAACTTGTCCTTGATGCTTTCCCCTTGGTTCTTTCTAAACAATATAGCAATGAGAAGCTATTAGTCTCATATATCATGCATAAAACTCCAAATCCAATCTTATTTGTTTTTTATTATCTTGTCCCTCTAACACAATCTTGTGGTAATTTGTCATATGTGGGGGTACAACGGATTTATGGTAAGTTGTAGAATACAATTTTCCAAAGGTTGCATTTTCTGGCGGCAATCTAGTTGGTAATGTGTAGTTCTGCATACTCTAGTGGGACAACGTGTAGTTACATTTATGTTATTTTCTTCTGTTTCAGGACGGATTTTAAGGGGTTTAGAACTTGCAATGACGTTATCAAACCATTAGAATCAACCAAATGATTGAAAACTATGGTTTCTCACTTTTTTTCTCCATTTTTTCCCCCTATGAAACAAGATTTCATATTCATTTGTTTCCTGCTATTTCAGGATTTTCCAACTATGTTTGCTGATCAATGTGTAACCATTTAGTAAAGACTGGTCATTAGATAGGTTCATGTCTGTTGAAACAAAATTAGAAATTGGAAAGGTTTAGGTCTGAGCAATACAGAAGTAAAGTTTAGTGTTTGAAGGGGAGACTTGGTTCATTTACTTAAGTCATTTTGGAACTGTATTCTAGGGGAAACATACTGCCTTATCAAGGTGTCGTCTTTTATCGTTTCTTTTATAAGTATGAAAAGTCACCTTGTTTGTTTTTCTAGATTTTGGATATGTGCGGCGGTTTGTGGATTTGCATATTAGGATCTTGAGTGGATAATGGTCTTGCCTGCAACTCTTTTTGTTGTGGAGGTACGATGTTTTCTAGATGGCAGCTTTGGGTCTTTTTGTGATGTCTCTCTTCTAATGAGCATCGTGAAATGTTCCATGGGTGCTAGATTGGGATCATGAAGATCACGGATTCTATGGTGGAGCTGGACTGGGGAACCAACTGCCACCTGAATTTGGATCACCACCTATTTTTTGGTAGAAGCATGTTCTAACAAAGCGAAATAAAGACTAGTTCATTCTTTTGGTATCCTGCTAATTGGTCTCTTTGACTGCTCGAATTTAAAATATTACATAGTCTCAATGGTGTAACTTGCATTGTTTTATACTTGCCATATTTTCCACTCTGGATTCTGCCAAATTGCTACTTTCATTATGGTCATGCTGAGGTGGAAGTGAAATCAAAGCAGTTGTGGAGGAAACTTGTTAAGTGGCGGGACTGGGATATTAAATTAAGTTCTTTCTGGAAATTTTGCAGATCTCCATCAAGGTCCAGATCACCAGCACCAGCTGTAAGTCAAATCTACATGTTTTAAAGTGAACGGAATAACCCAAAATTCAAATATATTGGGATCATCCGTCTTGTCTGTCTTTTTTTTGTGCTTACCTGGCCTTTTCAAAGTACATTCTCTCTTTTCTCTGTCTACATAATTATTGCTTTGTATTATGACTGGGTTAATTACAGCGTTCAAAACAATTAAGTGAAAGTCCCAAAAGACGCACTCCCAGCAGTAGCCCCAAAAGACGCACTC</genome_strand>
        <mrna_strand>CACATATTGAGCTGAAAATTCCACCAAGACCCCCTGGTTATGCTTTTGTTGAG......................................................................................................TTTGAAGAGGCTCGTGATGCTGAAGATGCTATTCGTGGTCGTGATGGCTATGATTTTGATGGGCACCGTCTGCGG...............................................................................................GTTGAGCTTGCACATGGCGGGCGTGGTAACTCATCATCAAATGATCGTTATGGTGGTGGCGGTGGCGGCCGTGGTCAGCGTGGTGGAGGAGTGTCAAGACGTTCAGATTATCGAG.....................................................................................TGTTAGTTACAGGATTACCCCATTCAGCATCGTGGCAGGATCTCAAG...................................................................................................................GATCACATGCGCCGTGCTGGGGATGTTTGTTTCTCCCAAGTTTTCCGTGACGGGAGTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACCACTGGTATAATTGATTATACAAACTATGATGACATGAAATATGCT...............................................................................................................................ATCAAAAAGCTTGATGACTCTGAGTTTCGAAATGCCTTTTCTCGTGCGACAATTCGA...................................................................................GTTAAAGAATATGACCGCAGTCGAAGTCGCAGCCGCAGTCGCAGTCGCAGTCGCTCTTACTCCAGAGGGAAGAGTGTTAGTCGAAGCCGAAGCCGTAGCCGAAGTAGAAGCCGAAGCAAGAGCAAAAG..................................................................................CAAATCTCCTAAAGTTAAGTCTTCAAAGCGCTCAAGATCTCGTTCAAGGTCTGTGTCTTCTCAGTCTCGTTCTGGGTCAAAAGGACGTCCTGTCTCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCCATCAAGGTCCAGATCACCAGCACCAGCT.............................................................................................................................................................................CGTTCAAAACAATTAAGTGAAAGTCCCAAAAGACGCACTCCCAGCAGTAGCCCCAAAAGACGCACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E339069" ref_strand="+" ref_description="SGN-E339069 [cTOF-6-C5]">
      <seq>agaggctcgtgatgctgaagatgctattcgtggtcgtgatggctatgattttgatgggcaccgtctgcgggttgagcttgcacatggcgggcgtggtaactcatcatcaaatgatcgttatggtggtggcggtggcggccgtggtcagcgtggtggaggagtgtcaagacgttcagattatcgagtgttagttacaggattaccccattcagcatcgtggcaggatctcaaggatcacatgcgccgtgctggggatgtttgtttctcccaagttttccgtgacgggagtggaaccactggtataattgattatacaaactatgatgacatgaaatatgctatcaaaaagcttgatgactctgagtttcgaaatgccttttctcgtgcgacaattcgagttaaagaatatgaccgcagtcgaagtcgcagccgcagtcgcagtcgctcttactccagagggaagagtgttagtcgaagccgaagccgtagccgaagtagaagccgaagcaagagcaaaagcaaatctcctaaagttaagtcttcaaagcgctcaagatctcgttcaaggtctgtgtcttctcagtctcgttctgggtcaaaaggacgtnctgtctcaagatctccatcaaggtccagatcaccagaccnaggctcgttcaaaacaattaagtgaaagtcccaaagacgcactcccagcagtagccccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="67922" stop="62513"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67622" g_stop="67553" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67552" i_stop="67458" i_length="95">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67457" g_stop="67343" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="185" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67342" i_stop="67258" i_length="85">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67257" g_stop="67211" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="232" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67210" i_stop="67096" i_length="115">
            <donor d_prob="0.611" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67095" g_stop="67038" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="290" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67037" i_stop="65269" i_length="1769">
            <donor d_prob="0.732" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="65268" g_stop="65219" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="340" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="65218" i_stop="65092" i_length="127">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="65091" g_stop="65035" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="397" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="65034" i_stop="64952" i_length="83">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.791" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="64951" g_stop="64830" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="519" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="64829" i_stop="64748" i_length="82">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.433" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="64747" g_stop="64649" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="618" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="64648" i_stop="63076" i_length="1573">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.961" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="63075" g_stop="63042" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="619" r_stop="653" r_length="35" r_score="0.853"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="63041" i_stop="62869" i_length="173">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="62868" g_stop="62813" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="654" r_stop="708" r_length="55" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E339069" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339069" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67622" e_stop="67553"/>
          <exon e_start="67457" e_stop="67343"/>
          <exon e_start="67257" e_stop="67211"/>
          <exon e_start="67095" e_stop="67038"/>
          <exon e_start="65268" e_stop="65219"/>
          <exon e_start="65091" e_stop="65035"/>
          <exon e_start="64951" e_stop="64830"/>
          <exon e_start="64747" e_stop="64649"/>
          <exon e_start="63075" e_stop="63042"/>
          <exon e_start="62868" e_stop="62813"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGGCTCGTGATGCTGAAGATGCTATTCGTGGTCGTGATGGCTATGATTTTGATGGGCACCGTCTGCGGGTCGGTCAAACTTATAGTTAGCGTATAGTTTACACAAGGTTACTAGTTTTTGCCTTGTTGGATGTTGAATCTATTACAATTGCTCATACTGGCAGGTTGAGCTTGCACATGGCGGGCGTGGTAACTCATCATCAAATGATCGTTATGGTGGTGGCGGTGGCGGCCGTGGTCAGCGTGGTGGAGGAGTGTCAAGACGTTCAGATTATCGAGGTGTGTCTTATGGGTTATGTGCTTTCTACATTGGAATACATGTTATATCTTTTCTTATGTTCTGATATCTTTTGTTGTATTTCAGTGTTAGTTACAGGATTACCCCATTCAGCATCGTGGCAGGATCTCAAGGTGAGTCGGTGTCTTTGAGTTGTGAATCATAGGGACTTACCAAGAAAGTGATCCTCCTTTCCCTCAAAATTATTCTGTAATTTCTGAGTATTGTTAACTTTTATTTCTTATGTAGGATCACATGCGCCGTGCTGGGGATGTTTGTTTCTCCCAAGTTTTCCGTGACGGGAGTGGTAAGATTTAAACAGCTAATGGCAGATCTACTTTTTCTCTTTGAACTGGTATAATGGTTTAACTGTCAAGCACACGGAACTCCTCCATGTGGAATGGCAACCTACAATGATACACCAAGCAATAAGTCTTTGATGTGAGCTTACAATGGTACTCACTAATTGTACTGATGATTTGGAGAAAGACCTGTATACAAACTGTATATCGAAAGATGGAGAATTCTACTGTAACACACTATTCCTCTTCTTGCTCATCGTGGTTGACCTGTCATAGGAATAGGTTAAGGATACTTTTCTTTATATCATAGTGTAAATTAATGAGTTTATAATCAAGTATTATATTAAGGGTGCAAGTCTGTCATTGTTAATTATTACTGTCATTCTTTTTATATTTAGAGCTTTGGTAATAACTGTGGGTTCATACCTGGGATATCTGATAAATTTGGAAAAATGCATAGGATCTATGACTCATAATTTGGGTTTTCAGTATAAGCTGATAAGTCTTTCTTTGTCTAGAAAAATGTTATATTGAAGGAAAAATAATATAGGAGAGATCATCTCTTCAGAAAATGTAGTGGAAATAATCATCGACATATTGATAACAATATTACTTGATGAAAACAGGATAAGGTCTTGACAAACTGGAGGGGAAAATATGCAGGTGGAGCAAAAAATTGGGAGGAAAGATGGAAAACTAAATATAAAAGAAACACTGAGTAGGAAAGAAGCACAAGTTAGATGTGTTATGGTTCCTCGAGGGTAGGGTGGGGTGGGGAGACCAACGTTGCTGCAAGCTTGAGGTCGGGGTAGGTCAAAAACCTAGAGGTGTTGGGGCATCATTGGTTGGTGGCTGGGTGAGGGCAAGATAAGTTCTGCTCTCAGGAAGAAATGGTGAAAAAGATGAAGAGAGATGTGTATTTTTGTTGTCTTCCCATCTAAGAATGTCTCGCCCTTGCCCATCTATTGTCCTCTTTTGCTCTTCTAATACAATTTGTTAATTTGGATTATGATCCTGTTATTTATCCCATTTTTTTCTGAGGACTATCATCCCTTGAGACAATTTAAAAGCTGGTTATCGACTGTGCTGCCTAATGTTTGGTGGTTGGTTGGATAAATTTGTTTAGACTAATCTGATGCACCTGATGACCCCATTAACTTGTATGATGTTTTGGATTTCTTTCCCCGTTTCTTTTTGAATTTTATTTTGGTACAACTGTTTGAAGTCTTTAACTAGATGCTAACCCAATGTGCCAAAATGTTCCCACGCTCTATGTTGATGACTGCATATGCAATTTTCTCCTCTATGATTCATTTCTACGTTTTCTGATCACGTGCAGAACTTGTCATATTGGAGGGTCCACTTTTGTTTTTTAAGGGAATGAAAATTAAGAGGAAGCAAATGATATTTGATGTAGGCCGAGAAAACTTGTTTTTTGAATCTTTTTATTGATATTTTTTGATTCTTTTTTGGTTTCAGTAAACATTTTGGTGCGATTTGCAAAAGACAACTTTTGTTTTAAGCAACAGTTGTTTTTAGTTTCCTGTAAAACTTCACCATAAATTTTTCTAATTCAAGTTTACCATAAACTATTGTGATCTAACTATTCCTAGAGTTTTCTGAATCCATAATGGCACACAAAATCGCTCTTTGCTTTAACTTGTTAGTGCACAATGCTTATTTTTACCCTGTAGGAAGCATCTTGATCTTCATATTACTGTCATTTCTGGTCCACAAGTTATTCTGATATCAACAAATTTGCTTGGACTTTCAGGAACCACTGGTATAATTGATTATACAAACTATGATGACATGAAATATGCTGTAAGCCATCTTCTCTTTTCTCCTTCCCTTTAGTTGGGTTTCCTTCACCTTGATGCTGTTGACAATATTTGATTTTTCCTTTATACAACTAAGAGGTGCAGCTAATATTATCCTTTCATGTGTATAGATCAAAAAGCTTGATGACTCTGAGTTTCGAAATGCCTTTTCTCGTGCGACAATTCGAGTATGACACAAACAATTTTCAATTTCTTCAATTATCGTGTTGATGCCGTCATTTGCTATTCTCAAAACCTCCACCTTCTGTAGGTTAAAGAATATGACCGCAGTCGAAGTCGCAGCCGCAGTCGCAGTCGCTCTTACTCCAGAGGGAAGAGTGTTAGTCGAAGCCGAAGCCGTAGCCGAAGTAGAAGCCGAAGCAAGAGCAAAAGGTCTAACACATTACACATATATGTCTGGACTAGTGGTTTTACTTTAATGCAAATAGGGCCTTATTAATATTTGTCTTAGCAGCAAATCTCCTAAAGTTAAGTCTTCAAAGCGCTCAAGATCTCGTTCAAGGTCTGTGTCTTCTCAGTCTCGTTCTGGGTCAAAAGGACGTCCTGTCTCAAGGTAATATTCTGCTTTCTCTTTCTGTTTTTGTTTCGGGATGGGTATAAAAGCATTACATAGTACAAGGTTAATATTTGCATAAACTGCAAATCTTTCATTCTTTATTATCTTATTAGAGTTCTTCAATTTCTCAAGTTGTTCTTCACACTCAAAGTATTGTTGATTTAAGATCTTTAAATCTAAAATGCTCTTGCAGTTGATTACTTTGCCTTTTATCTTCTATGTTATTGTTAGTTTGATGTGCTCACTGCAAAGTTCACATCAAAATGGTGTAGACTCCTGGGTGCTTTAGTCTTCTTTGTTTAACTTGTCCTTGATGCTTTCCCCTTGGTTCTTTCTAAACAATATAGCAATGAGAAGCTATTAGTCTCATATATCATGCATAAAACTCCAAATCCAATCTTATTTGTTTTTTATTATCTTGTCCCTCTAACACAATCTTGTGGTAATTTGTCATATGTGGGGGTACAACGGATTTATGGTAAGTTGTAGAATACAATTTTCCAAAGGTTGCATTTTCTGGCGGCAATCTAGTTGGTAATGTGTAGTTCTGCATACTCTAGTGGGACAACGTGTAGTTACATTTATGTTATTTTCTTCTGTTTCAGGACGGATTTTAAGGGGTTTAGAACTTGCAATGACGTTATCAAACCATTAGAATCAACCAAATGATTGAAAACTATGGTTTCTCACTTTTTTTCTCCATTTTTTCCCCCTATGAAACAAGATTTCATATTCATTTGTTTCCTGCTATTTCAGGATTTTCCAACTATGTTTGCTGATCAATGTGTAACCATTTAGTAAAGACTGGTCATTAGATAGGTTCATGTCTGTTGAAACAAAATTAGAAATTGGAAAGGTTTAGGTCTGAGCAATACAGAAGTAAAGTTTAGTGTTTGAAGGGGAGACTTGGTTCATTTACTTAAGTCATTTTGGAACTGTATTCTAGGGGAAACATACTGCCTTATCAAGGTGTCGTCTTTTATCGTTTCTTTTATAAGTATGAAAAGTCACCTTGTTTGTTTTTCTAGATTTTGGATATGTGCGGCGGTTTGTGGATTTGCATATTAGGATCTTGAGTGGATAATGGTCTTGCCTGCAACTCTTTTTGTTGTGGAGGTACGATGTTTTCTAGATGGCAGCTTTGGGTCTTTTTGTGATGTCTCTCTTCTAATGAGCATCGTGAAATGTTCCATGGGTGCTAGATTGGGATCATGAAGATCACGGATTCTATGGTGGAGCTGGACTGGGGAACCAACTGCCACCTGAATTTGGATCACCACCTATTTTTTGGTAGAAGCATGTTCTAACAAAGCGAAATAAAGACTAGTTCATTCTTTTGGTATCCTGCTAATTGGTCTCTTTGACTGCTCGAATTTAAAATATTACATAGTCTCAATGGTGTAACTTGCATTGTTTTATACTTGCCATATTTTCCACTCTGGATTCTGCCAAATTGCTACTTTCATTATGGTCATGCTGAGGTGGAAGTGAAATCAAAGCAGTTGTGGAGGAAACTTGTTAAGTGGCGGGACTGGGATATTAAATTAAGTTCTTTCTGGAAATTTTGCAGATCTCCATCAAGGTCCAGATCACCAGCACCA-GCTGTAAGTCAAATCTACATGTTTTAAAGTGAACGGAATAACCCAAAATTCAAATATATTGGGATCATCCGTCTTGTCTGTCTTTTTTTTGTGCTTACCTGGCCTTTTCAAAGTACATTCTCTCTTTTCTCTGTCTACATAATTATTGCTTTGTATTATGACTGGGTTAATTACAGCGTTCAAAACAATTAAGTGAAAGTCCCAAAAGACGCACTCCCAGCAGTAGCCCCAA</genome_strand>
        <mrna_strand>AGAGGCTCGTGATGCTGAAGATGCTATTCGTGGTCGTGATGGCTATGATTTTGATGGGCACCGTCTGCGG...............................................................................................GTTGAGCTTGCACATGGCGGGCGTGGTAACTCATCATCAAATGATCGTTATGGTGGTGGCGGTGGCGGCCGTGGTCAGCGTGGTGGAGGAGTGTCAAGACGTTCAGATTATCGAG.....................................................................................TGTTAGTTACAGGATTACCCCATTCAGCATCGTGGCAGGATCTCAAG...................................................................................................................GATCACATGCGCCGTGCTGGGGATGTTTGTTTCTCCCAAGTTTTCCGTGACGGGAGTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACCACTGGTATAATTGATTATACAAACTATGATGACATGAAATATGCT...............................................................................................................................ATCAAAAAGCTTGATGACTCTGAGTTTCGAAATGCCTTTTCTCGTGCGACAATTCGA...................................................................................GTTAAAGAATATGACCGCAGTCGAAGTCGCAGCCGCAGTCGCAGTCGCTCTTACTCCAGAGGGAAGAGTGTTAGTCGAAGCCGAAGCCGTAGCCGAAGTAGAAGCCGAAGCAAGAGCAAAAG..................................................................................CAAATCTCCTAAAGTTAAGTCTTCAAAGCGCTCAAGATCTCGTTCAAGGTCTGTGTCTTCTCAGTCTCGTTCTGGGTCAAAAGGACGTNCTGTCTCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCCATCAAGGTCCAGATCACCAGACCNAGGCT.............................................................................................................................................................................CGTTCAAAACAATTAAGTGAAAGTCCC-AAAGACGCACTCCCAGCAGTAGCCCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E700685" ref_strand="+" ref_description="SGN-E700685 [FA13DD10]">
      <seq>ggacctttgagtcggtcgagtaggacactttatgttggcaatcttcctggtgatgttcgtgagcgtgaagtggaagatctcttttacaagtatggaccgattgcacatattgagctgaaaattccaccaagaccccctggttatgcttttgttgagtttgaagaggctcgtgatgctgaagatgctattcgtggtcgtgatggctatgattttgatgggcaccgtctgcgggttgagcttgcacatggcgggcgtggtaactcatcatcaaatgatcgttatggtggtggcggtggcggccgtggtcagcgtggtggaggagtgtcaagacgttcagattatcgagtgttagttacaggattaccccattcagcatcgtggcaggatctcaaggatcacatgcgccgtgctggggatgtttgtttctcccaagttttccgtgacgggagtggaaccactggtataattgattatacaaactatgatgacatgaaatatgctatcaaaaagcttgatgactctgagtttcgaaatgccttttctcgtgcgacaattcgagttaaagaatatgaccgcagtcgaagtcgcagccgcagtcgcagtcgcagtcgctcttactccagagggaagagtgttagtcgaagccgaagccgtagccgaagtagaagccgaagcaagagcaaaagcaaatctcctaaagttaagtcttcaaagcgctcaagatctcgttcaaggtctgtgtcttctcagtctcgttctgggtcaaaaggacgtcctgtctcaagatctccatcaaggtccagatcaccagcaccagctcgttcaaaacaattaagtgaaagtcccaaaagacgcactccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="68452" stop="62527"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68152" g_stop="68063" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68062" i_stop="67796" i_length="267">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67795" g_stop="67730" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="156" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67729" i_stop="67628" i_length="102">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67627" g_stop="67553" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="231" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67552" i_stop="67458" i_length="95">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67457" g_stop="67343" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="346" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67342" i_stop="67258" i_length="85">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67257" g_stop="67211" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="393" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67210" i_stop="67096" i_length="115">
            <donor d_prob="0.611" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67095" g_stop="67038" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="451" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="67037" i_stop="65269" i_length="1769">
            <donor d_prob="0.732" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="65268" g_stop="65219" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="501" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="65218" i_stop="65092" i_length="127">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="65091" g_stop="65035" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="558" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="65034" i_stop="64952" i_length="83">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.791" a_score="0.73"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="64951" g_stop="64830" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="686" r_length="128" r_score="0.902"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="64829" i_stop="64748" i_length="82">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.433" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="64747" g_stop="64649" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="687" r_stop="785" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="64648" i_stop="63076" i_length="1573">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="63075" g_stop="63042" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="786" r_stop="819" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="63041" i_stop="62869" i_length="173">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="62868" g_stop="62827" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="820" r_stop="861" r_length="42" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E700685" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>855</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700685" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68152" e_stop="68063"/>
          <exon e_start="67795" e_stop="67730"/>
          <exon e_start="67627" e_stop="67553"/>
          <exon e_start="67457" e_stop="67343"/>
          <exon e_start="67257" e_stop="67211"/>
          <exon e_start="67095" e_stop="67038"/>
          <exon e_start="65268" e_stop="65219"/>
          <exon e_start="65091" e_stop="65035"/>
          <exon e_start="64951" e_stop="64830"/>
          <exon e_start="64747" e_stop="64649"/>
          <exon e_start="63075" e_stop="63042"/>
          <exon e_start="62868" e_stop="62827"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAACAATGAGTCGGTCGAGTAGGACACTTTATGTTGGCAATCTTCCTGGTGATGTTCGTGAGCGTGAAGTGGAAGATCTCTTTTACAAGGTGCTTATACTCTAGATGGCTCCCTACATTCTTTGATATCATTTCATAATGCTTATAAACAAAAAGAAAAATGATTAGAAGTAAAATTATGTTTTTGAGTGAAATGGGTACAAATAGAGTGGTATGGATATAGGGAATTCATTATCGACAAACTCAAATTAAGGAGTATTTCTTTTGTAAGGCTTGTGCACATGTTTAATTGTTCTGTCACAATTTAACAGATTTTAACTGTTAGAAACTTATAAACAATTTGATGTGTGAGTGCAGTATGGACCGATTGCACATATTGAGCTGAAAATTCCACCAAGACCCCCTGGTTATGCTTTTGTTGAGGTGAGTTTGAGCTGCCTTGGTTCTGATGGATTTCATTAGATCAGCCTGCTATGCGCCTTTTAAAGCTATTCTGACCTTTATATTGGCCAAAAACTATAACAGTTTGAAGAGGCTCGTGATGCTGAAGATGCTATTCGTGGTCGTGATGGCTATGATTTTGATGGGCACCGTCTGCGGGTCGGTCAAACTTATAGTTAGCGTATAGTTTACACAAGGTTACTAGTTTTTGCCTTGTTGGATGTTGAATCTATTACAATTGCTCATACTGGCAGGTTGAGCTTGCACATGGCGGGCGTGGTAACTCATCATCAAATGATCGTTATGGTGGTGGCGGTGGCGGCCGTGGTCAGCGTGGTGGAGGAGTGTCAAGACGTTCAGATTATCGAGGTGTGTCTTATGGGTTATGTGCTTTCTACATTGGAATACATGTTATATCTTTTCTTATGTTCTGATATCTTTTGTTGTATTTCAGTGTTAGTTACAGGATTACCCCATTCAGCATCGTGGCAGGATCTCAAGGTGAGTCGGTGTCTTTGAGTTGTGAATCATAGGGACTTACCAAGAAAGTGATCCTCCTTTCCCTCAAAATTATTCTGTAATTTCTGAGTATTGTTAACTTTTATTTCTTATGTAGGATCACATGCGCCGTGCTGGGGATGTTTGTTTCTCCCAAGTTTTCCGTGACGGGAGTGGTAAGATTTAAACAGCTAATGGCAGATCTACTTTTTCTCTTTGAACTGGTATAATGGTTTAACTGTCAAGCACACGGAACTCCTCCATGTGGAATGGCAACCTACAATGATACACCAAGCAATAAGTCTTTGATGTGAGCTTACAATGGTACTCACTAATTGTACTGATGATTTGGAGAAAGACCTGTATACAAACTGTATATCGAAAGATGGAGAATTCTACTGTAACACACTATTCCTCTTCTTGCTCATCGTGGTTGACCTGTCATAGGAATAGGTTAAGGATACTTTTCTTTATATCATAGTGTAAATTAATGAGTTTATAATCAAGTATTATATTAAGGGTGCAAGTCTGTCATTGTTAATTATTACTGTCATTCTTTTTATATTTAGAGCTTTGGTAATAACTGTGGGTTCATACCTGGGATATCTGATAAATTTGGAAAAATGCATAGGATCTATGACTCATAATTTGGGTTTTCAGTATAAGCTGATAAGTCTTTCTTTGTCTAGAAAAATGTTATATTGAAGGAAAAATAATATAGGAGAGATCATCTCTTCAGAAAATGTAGTGGAAATAATCATCGACATATTGATAACAATATTACTTGATGAAAACAGGATAAGGTCTTGACAAACTGGAGGGGAAAATATGCAGGTGGAGCAAAAAATTGGGAGGAAAGATGGAAAACTAAATATAAAAGAAACACTGAGTAGGAAAGAAGCACAAGTTAGATGTGTTATGGTTCCTCGAGGGTAGGGTGGGGTGGGGAGACCAACGTTGCTGCAAGCTTGAGGTCGGGGTAGGTCAAAAACCTAGAGGTGTTGGGGCATCATTGGTTGGTGGCTGGGTGAGGGCAAGATAAGTTCTGCTCTCAGGAAGAAATGGTGAAAAAGATGAAGAGAGATGTGTATTTTTGTTGTCTTCCCATCTAAGAATGTCTCGCCCTTGCCCATCTATTGTCCTCTTTTGCTCTTCTAATACAATTTGTTAATTTGGATTATGATCCTGTTATTTATCCCATTTTTTTCTGAGGACTATCATCCCTTGAGACAATTTAAAAGCTGGTTATCGACTGTGCTGCCTAATGTTTGGTGGTTGGTTGGATAAATTTGTTTAGACTAATCTGATGCACCTGATGACCCCATTAACTTGTATGATGTTTTGGATTTCTTTCCCCGTTTCTTTTTGAATTTTATTTTGGTACAACTGTTTGAAGTCTTTAACTAGATGCTAACCCAATGTGCCAAAATGTTCCCACGCTCTATGTTGATGACTGCATATGCAATTTTCTCCTCTATGATTCATTTCTACGTTTTCTGATCACGTGCAGAACTTGTCATATTGGAGGGTCCACTTTTGTTTTTTAAGGGAATGAAAATTAAGAGGAAGCAAATGATATTTGATGTAGGCCGAGAAAACTTGTTTTTTGAATCTTTTTATTGATATTTTTTGATTCTTTTTTGGTTTCAGTAAACATTTTGGTGCGATTTGCAAAAGACAACTTTTGTTTTAAGCAACAGTTGTTTTTAGTTTCCTGTAAAACTTCACCATAAATTTTTCTAATTCAAGTTTACCATAAACTATTGTGATCTAACTATTCCTAGAGTTTTCTGAATCCATAATGGCACACAAAATCGCTCTTTGCTTTAACTTGTTAGTGCACAATGCTTATTTTTACCCTGTAGGAAGCATCTTGATCTTCATATTACTGTCATTTCTGGTCCACAAGTTATTCTGATATCAACAAATTTGCTTGGACTTTCAGGAACCACTGGTATAATTGATTATACAAACTATGATGACATGAAATATGCTGTAAGCCATCTTCTCTTTTCTCCTTCCCTTTAGTTGGGTTTCCTTCACCTTGATGCTGTTGACAATATTTGATTTTTCCTTTATACAACTAAGAGGTGCAGCTAATATTATCCTTTCATGTGTATAGATCAAAAAGCTTGATGACTCTGAGTTTCGAAATGCCTTTTCTCGTGCGACAATTCGAGTATGACACAAACAATTTTCAATTTCTTCAATTATCGTGTTGATGCCGTCATTTGCTATTCTCAAAACCTCCACCTTCTGTAGGTTAAAGAATATGACCGCAGTCGAAGTCGCA---GC---CGCAGTCGCAGTCGCTCTTACTCCAGAGGGAAGAGTGTTAGTCGAAGCCGAAGCCGTAGCCGAAGTAGAAGCCGAAGCAAGAGCAAAAGGTCTAACACATTACACATATATGTCTGGACTAGTGGTTTTACTTTAATGCAAATAGGGCCTTATTAATATTTGTCTTAGCAGCAAATCTCCTAAAGTTAAGTCTTCAAAGCGCTCAAGATCTCGTTCAAGGTCTGTGTCTTCTCAGTCTCGTTCTGGGTCAAAAGGACGTCCTGTCTCAAGGTAATATTCTGCTTTCTCTTTCTGTTTTTGTTTCGGGATGGGTATAAAAGCATTACATAGTACAAGGTTAATATTTGCATAAACTGCAAATCTTTCATTCTTTATTATCTTATTAGAGTTCTTCAATTTCTCAAGTTGTTCTTCACACTCAAAGTATTGTTGATTTAAGATCTTTAAATCTAAAATGCTCTTGCAGTTGATTACTTTGCCTTTTATCTTCTATGTTATTGTTAGTTTGATGTGCTCACTGCAAAGTTCACATCAAAATGGTGTAGACTCCTGGGTGCTTTAGTCTTCTTTGTTTAACTTGTCCTTGATGCTTTCCCCTTGGTTCTTTCTAAACAATATAGCAATGAGAAGCTATTAGTCTCATATATCATGCATAAAACTCCAAATCCAATCTTATTTGTTTTTTATTATCTTGTCCCTCTAACACAATCTTGTGGTAATTTGTCATATGTGGGGGTACAACGGATTTATGGTAAGTTGTAGAATACAATTTTCCAAAGGTTGCATTTTCTGGCGGCAATCTAGTTGGTAATGTGTAGTTCTGCATACTCTAGTGGGACAACGTGTAGTTACATTTATGTTATTTTCTTCTGTTTCAGGACGGATTTTAAGGGGTTTAGAACTTGCAATGACGTTATCAAACCATTAGAATCAACCAAATGATTGAAAACTATGGTTTCTCACTTTTTTTCTCCATTTTTTCCCCCTATGAAACAAGATTTCATATTCATTTGTTTCCTGCTATTTCAGGATTTTCCAACTATGTTTGCTGATCAATGTGTAACCATTTAGTAAAGACTGGTCATTAGATAGGTTCATGTCTGTTGAAACAAAATTAGAAATTGGAAAGGTTTAGGTCTGAGCAATACAGAAGTAAAGTTTAGTGTTTGAAGGGGAGACTTGGTTCATTTACTTAAGTCATTTTGGAACTGTATTCTAGGGGAAACATACTGCCTTATCAAGGTGTCGTCTTTTATCGTTTCTTTTATAAGTATGAAAAGTCACCTTGTTTGTTTTTCTAGATTTTGGATATGTGCGGCGGTTTGTGGATTTGCATATTAGGATCTTGAGTGGATAATGGTCTTGCCTGCAACTCTTTTTGTTGTGGAGGTACGATGTTTTCTAGATGGCAGCTTTGGGTCTTTTTGTGATGTCTCTCTTCTAATGAGCATCGTGAAATGTTCCATGGGTGCTAGATTGGGATCATGAAGATCACGGATTCTATGGTGGAGCTGGACTGGGGAACCAACTGCCACCTGAATTTGGATCACCACCTATTTTTTGGTAGAAGCATGTTCTAACAAAGCGAAATAAAGACTAGTTCATTCTTTTGGTATCCTGCTAATTGGTCTCTTTGACTGCTCGAATTTAAAATATTACATAGTCTCAATGGTGTAACTTGCATTGTTTTATACTTGCCATATTTTCCACTCTGGATTCTGCCAAATTGCTACTTTCATTATGGTCATGCTGAGGTGGAAGTGAAATCAAAGCAGTTGTGGAGGAAACTTGTTAAGTGGCGGGACTGGGATATTAAATTAAGTTCTTTCTGGAAATTTTGCAGATCTCCATCAAGGTCCAGATCACCAGCACCAGCTGTAAGTCAAATCTACATGTTTTAAAGTGAACGGAATAACCCAAAATTCAAATATATTGGGATCATCCGTCTTGTCTGTCTTTTTTTTGTGCTTACCTGGCCTTTTCAAAGTACATTCTCTCTTTTCTCTGTCTACATAATTATTGCTTTGTATTATGACTGGGTTAATTACAGCGTTCAAAACAATTAAGTGAAAGTCCCAAAAGACGCACTCCC</genome_strand>
        <mrna_strand>GGACCTTTGAGTCGGTCGAGTAGGACACTTTATGTTGGCAATCTTCCTGGTGATGTTCGTGAGCGTGAAGTGGAAGATCTCTTTTACAAG...........................................................................................................................................................................................................................................................................TATGGACCGATTGCACATATTGAGCTGAAAATTCCACCAAGACCCCCTGGTTATGCTTTTGTTGAG......................................................................................................TTTGAAGAGGCTCGTGATGCTGAAGATGCTATTCGTGGTCGTGATGGCTATGATTTTGATGGGCACCGTCTGCGG...............................................................................................GTTGAGCTTGCACATGGCGGGCGTGGTAACTCATCATCAAATGATCGTTATGGTGGTGGCGGTGGCGGCCGTGGTCAGCGTGGTGGAGGAGTGTCAAGACGTTCAGATTATCGAG.....................................................................................TGTTAGTTACAGGATTACCCCATTCAGCATCGTGGCAGGATCTCAAG...................................................................................................................GATCACATGCGCCGTGCTGGGGATGTTTGTTTCTCCCAAGTTTTCCGTGACGGGAGTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACCACTGGTATAATTGATTATACAAACTATGATGACATGAAATATGCT...............................................................................................................................ATCAAAAAGCTTGATGACTCTGAGTTTCGAAATGCCTTTTCTCGTGCGACAATTCGA...................................................................................GTTAAAGAATATGACCGCAGTCGAAGTCGCAGCCGCAGTCGCAGTCGCAGTCGCTCTTACTCCAGAGGGAAGAGTGTTAGTCGAAGCCGAAGCCGTAGCCGAAGTAGAAGCCGAAGCAAGAGCAAAAG..................................................................................CAAATCTCCTAAAGTTAAGTCTTCAAAGCGCTCAAGATCTCGTTCAAGGTCTGTGTCTTCTCAGTCTCGTTCTGGGTCAAAAGGACGTCCTGTCTCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCCATCAAGGTCCAGATCACCAGCACCAGCT.............................................................................................................................................................................CGTTCAAAACAATTAAGTGAAAGTCCCAAAAGACGCACTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E251044" ref_strand="+" ref_description="SGN-E251044 [cLEG-17-A11]">
      <seq>agctggactggggaaccaactgccacctgggtttggatcaccagctattttttggtagaagcatgttctaacaaagcgaaataaaaactagttcattcttttggtatcccgctaattggtctctttgactgctcgaatttaaaatattacatagtctcaatggtgtaacttgcattgttttatacttgccatattttccactctggattctgccaaattgctactttcattatggtcatgctgaggtggaagtgaaatcaaagcagttgtgggggaaacttgttaagtggcgggactgggatattaaattaagttctttctggaaattttgcagatctccatcaaggtccagatcaccagcaccagctcgttcaaaacaatttagtgaaagtccccaaagacgcactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="63709" stop="62740"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63409" g_stop="63042" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="368" r_length="368" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63041" i_stop="62869" i_length="173">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62868" g_stop="62829" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="408" r_length="40" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E251044" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E251044" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63409" e_stop="63042"/>
          <exon e_start="62868" e_stop="62829"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTGGACTGGGGAACCAACTGCCACCTGAATTTGGATCACCACCTATTTTTTGGTAGAAGCATGTTCTAACAAAGCGAAATAAAGACTAGTTCATTCTTTTGGTATCCTGCTAATTGGTCTCTTTGACTGCTCGAATTTAAAATATTACATAGTCTCAATGGTGTAACTTGCATTGTTTTATACTTGCCATATTTTCCACTCTGGATTCTGCCAAATTGCTACTTTCATTATGGTCATGCTGAGGTGGAAGTGAAATCAAAGCAGTTGTGGAGGAAACTTGTTAAGTGGCGGGACTGGGATATTAAATTAAGTTCTTTCTGGAAATTTTGCAGATCTCCATCAAGGTCCAGATCACCAGCACCAGCTGTAAGTCAAATCTACATGTTTTAAAGTGAACGGAATAACCCAAAATTCAAATATATTGGGATCATCCGTCTTGTCTGTCTTTTTTTTGTGCTTACCTGGCCTTTTCAAAGTACATTCTCTCTTTTCTCTGTCTACATAATTATTGCTTTGTATTATGACTGGGTTAATTACAGCGTTCAAAACAATTAAGTGAAAGTCCCAAAAGACGCACTC</genome_strand>
        <mrna_strand>AGCTGGACTGGGGAACCAACTGCCACCTGGGTTTGGATCACCAGCTATTTTTTGGTAGAAGCATGTTCTAACAAAGCGAAATAAAAACTAGTTCATTCTTTTGGTATCCCGCTAATTGGTCTCTTTGACTGCTCGAATTTAAAATATTACATAGTCTCAATGGTGTAACTTGCATTGTTTTATACTTGCCATATTTTCCACTCTGGATTCTGCCAAATTGCTACTTTCATTATGGTCATGCTGAGGTGGAAGTGAAATCAAAGCAGTTGTGGGGGAAACTTGTTAAGTGGCGGGACTGGGATATTAAATTAAGTTCTTTCTGGAAATTTTGCAGATCTCCATCAAGGTCCAGATCACCAGCACCAGCT.............................................................................................................................................................................CGTTCAAAACAATTTAGTGAAAGTCCCCAAAGACGCACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E703392" ref_strand="+" ref_description="SGN-E703392 [FA21BE04]">
      <seq>caggaacaatgagtcggtcgagtaggacactttatgttggcaatcttcctggtgatgttcgtgagcgtgaagtggaagatctcttttacaagtatggaccgattgcacatattgagctgaaaattccaccaagaccccctggttatgcttttgttgagtttgaagaggctcgtgatgctgaagatgctattcgtggtcgtgatggctatgattttgatgggcaccgtctgcgggttgagcttgcacatggcgggcgtggtaactcatcatcaaatgatcgttatggtggtggcggtggcggccgtggtcagcgtggtggaggagtgtcaagacgttcagattatcgagtgttagttacaggattaccccattcagcatcgtggcaggatctcaaggatcacatgcgccgtgctggggatgtttgtttctcccaagttttccgtgacgggagtggaaccactggtataattgattatacaaactatgatgacatgaaatatgctatcaaaaagcttgatgactctgagtttcgaaatgccttttctcgtgcgacaattcgagttaaagaatatgaccgcagtcgaagtcgcagccgcagtcgcagtcgcagtcgctcttactccagagggaagagtgttagtcgaagccgaagccgtagccgaagtagaagccgaagcaagagcaaaagcaaatctcctaaagttaagtcttcaaagcgctcaagatctcgttcaaggtctgtgtcttctcagtctcgttctgggtcaaaaggacgtcctgtctcaagatctccatcaaggtccagatcaccagcaccagctcgttcaaaacaattaagtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="68454" stop="62549"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68154" g_stop="68063" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68062" i_stop="67796" i_length="267">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67795" g_stop="67730" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="158" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67729" i_stop="67628" i_length="102">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67627" g_stop="67553" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="233" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67552" i_stop="67458" i_length="95">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67457" g_stop="67343" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="348" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67342" i_stop="67258" i_length="85">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67257" g_stop="67211" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="395" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67210" i_stop="67096" i_length="115">
            <donor d_prob="0.611" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67095" g_stop="67038" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="453" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="67037" i_stop="65269" i_length="1769">
            <donor d_prob="0.732" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="65268" g_stop="65219" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="503" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="65218" i_stop="65092" i_length="127">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="65091" g_stop="65035" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="560" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="65034" i_stop="64952" i_length="83">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.791" a_score="0.73"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="64951" g_stop="64830" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="688" r_length="128" r_score="0.902"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="64829" i_stop="64748" i_length="82">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.433" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="64747" g_stop="64649" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="689" r_stop="787" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="64648" i_stop="63076" i_length="1573">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="63075" g_stop="63042" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="788" r_stop="821" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="63041" i_stop="62869" i_length="173">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="62868" g_stop="62849" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="822" r_stop="841" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E703392" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>835</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703392" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68154" e_stop="68063"/>
          <exon e_start="67795" e_stop="67730"/>
          <exon e_start="67627" e_stop="67553"/>
          <exon e_start="67457" e_stop="67343"/>
          <exon e_start="67257" e_stop="67211"/>
          <exon e_start="67095" e_stop="67038"/>
          <exon e_start="65268" e_stop="65219"/>
          <exon e_start="65091" e_stop="65035"/>
          <exon e_start="64951" e_stop="64830"/>
          <exon e_start="64747" e_stop="64649"/>
          <exon e_start="63075" e_stop="63042"/>
          <exon e_start="62868" e_stop="62849"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGAACAATGAGTCGGTCGAGTAGGACACTTTATGTTGGCAATCTTCCTGGTGATGTTCGTGAGCGTGAAGTGGAAGATCTCTTTTACAAGGTGCTTATACTCTAGATGGCTCCCTACATTCTTTGATATCATTTCATAATGCTTATAAACAAAAAGAAAAATGATTAGAAGTAAAATTATGTTTTTGAGTGAAATGGGTACAAATAGAGTGGTATGGATATAGGGAATTCATTATCGACAAACTCAAATTAAGGAGTATTTCTTTTGTAAGGCTTGTGCACATGTTTAATTGTTCTGTCACAATTTAACAGATTTTAACTGTTAGAAACTTATAAACAATTTGATGTGTGAGTGCAGTATGGACCGATTGCACATATTGAGCTGAAAATTCCACCAAGACCCCCTGGTTATGCTTTTGTTGAGGTGAGTTTGAGCTGCCTTGGTTCTGATGGATTTCATTAGATCAGCCTGCTATGCGCCTTTTAAAGCTATTCTGACCTTTATATTGGCCAAAAACTATAACAGTTTGAAGAGGCTCGTGATGCTGAAGATGCTATTCGTGGTCGTGATGGCTATGATTTTGATGGGCACCGTCTGCGGGTCGGTCAAACTTATAGTTAGCGTATAGTTTACACAAGGTTACTAGTTTTTGCCTTGTTGGATGTTGAATCTATTACAATTGCTCATACTGGCAGGTTGAGCTTGCACATGGCGGGCGTGGTAACTCATCATCAAATGATCGTTATGGTGGTGGCGGTGGCGGCCGTGGTCAGCGTGGTGGAGGAGTGTCAAGACGTTCAGATTATCGAGGTGTGTCTTATGGGTTATGTGCTTTCTACATTGGAATACATGTTATATCTTTTCTTATGTTCTGATATCTTTTGTTGTATTTCAGTGTTAGTTACAGGATTACCCCATTCAGCATCGTGGCAGGATCTCAAGGTGAGTCGGTGTCTTTGAGTTGTGAATCATAGGGACTTACCAAGAAAGTGATCCTCCTTTCCCTCAAAATTATTCTGTAATTTCTGAGTATTGTTAACTTTTATTTCTTATGTAGGATCACATGCGCCGTGCTGGGGATGTTTGTTTCTCCCAAGTTTTCCGTGACGGGAGTGGTAAGATTTAAACAGCTAATGGCAGATCTACTTTTTCTCTTTGAACTGGTATAATGGTTTAACTGTCAAGCACACGGAACTCCTCCATGTGGAATGGCAACCTACAATGATACACCAAGCAATAAGTCTTTGATGTGAGCTTACAATGGTACTCACTAATTGTACTGATGATTTGGAGAAAGACCTGTATACAAACTGTATATCGAAAGATGGAGAATTCTACTGTAACACACTATTCCTCTTCTTGCTCATCGTGGTTGACCTGTCATAGGAATAGGTTAAGGATACTTTTCTTTATATCATAGTGTAAATTAATGAGTTTATAATCAAGTATTATATTAAGGGTGCAAGTCTGTCATTGTTAATTATTACTGTCATTCTTTTTATATTTAGAGCTTTGGTAATAACTGTGGGTTCATACCTGGGATATCTGATAAATTTGGAAAAATGCATAGGATCTATGACTCATAATTTGGGTTTTCAGTATAAGCTGATAAGTCTTTCTTTGTCTAGAAAAATGTTATATTGAAGGAAAAATAATATAGGAGAGATCATCTCTTCAGAAAATGTAGTGGAAATAATCATCGACATATTGATAACAATATTACTTGATGAAAACAGGATAAGGTCTTGACAAACTGGAGGGGAAAATATGCAGGTGGAGCAAAAAATTGGGAGGAAAGATGGAAAACTAAATATAAAAGAAACACTGAGTAGGAAAGAAGCACAAGTTAGATGTGTTATGGTTCCTCGAGGGTAGGGTGGGGTGGGGAGACCAACGTTGCTGCAAGCTTGAGGTCGGGGTAGGTCAAAAACCTAGAGGTGTTGGGGCATCATTGGTTGGTGGCTGGGTGAGGGCAAGATAAGTTCTGCTCTCAGGAAGAAATGGTGAAAAAGATGAAGAGAGATGTGTATTTTTGTTGTCTTCCCATCTAAGAATGTCTCGCCCTTGCCCATCTATTGTCCTCTTTTGCTCTTCTAATACAATTTGTTAATTTGGATTATGATCCTGTTATTTATCCCATTTTTTTCTGAGGACTATCATCCCTTGAGACAATTTAAAAGCTGGTTATCGACTGTGCTGCCTAATGTTTGGTGGTTGGTTGGATAAATTTGTTTAGACTAATCTGATGCACCTGATGACCCCATTAACTTGTATGATGTTTTGGATTTCTTTCCCCGTTTCTTTTTGAATTTTATTTTGGTACAACTGTTTGAAGTCTTTAACTAGATGCTAACCCAATGTGCCAAAATGTTCCCACGCTCTATGTTGATGACTGCATATGCAATTTTCTCCTCTATGATTCATTTCTACGTTTTCTGATCACGTGCAGAACTTGTCATATTGGAGGGTCCACTTTTGTTTTTTAAGGGAATGAAAATTAAGAGGAAGCAAATGATATTTGATGTAGGCCGAGAAAACTTGTTTTTTGAATCTTTTTATTGATATTTTTTGATTCTTTTTTGGTTTCAGTAAACATTTTGGTGCGATTTGCAAAAGACAACTTTTGTTTTAAGCAACAGTTGTTTTTAGTTTCCTGTAAAACTTCACCATAAATTTTTCTAATTCAAGTTTACCATAAACTATTGTGATCTAACTATTCCTAGAGTTTTCTGAATCCATAATGGCACACAAAATCGCTCTTTGCTTTAACTTGTTAGTGCACAATGCTTATTTTTACCCTGTAGGAAGCATCTTGATCTTCATATTACTGTCATTTCTGGTCCACAAGTTATTCTGATATCAACAAATTTGCTTGGACTTTCAGGAACCACTGGTATAATTGATTATACAAACTATGATGACATGAAATATGCTGTAAGCCATCTTCTCTTTTCTCCTTCCCTTTAGTTGGGTTTCCTTCACCTTGATGCTGTTGACAATATTTGATTTTTCCTTTATACAACTAAGAGGTGCAGCTAATATTATCCTTTCATGTGTATAGATCAAAAAGCTTGATGACTCTGAGTTTCGAAATGCCTTTTCTCGTGCGACAATTCGAGTATGACACAAACAATTTTCAATTTCTTCAATTATCGTGTTGATGCCGTCATTTGCTATTCTCAAAACCTCCACCTTCTGTAGGTTAAAGAATATGACCGCAGTCGAAGTCGCA---GC---CGCAGTCGCAGTCGCTCTTACTCCAGAGGGAAGAGTGTTAGTCGAAGCCGAAGCCGTAGCCGAAGTAGAAGCCGAAGCAAGAGCAAAAGGTCTAACACATTACACATATATGTCTGGACTAGTGGTTTTACTTTAATGCAAATAGGGCCTTATTAATATTTGTCTTAGCAGCAAATCTCCTAAAGTTAAGTCTTCAAAGCGCTCAAGATCTCGTTCAAGGTCTGTGTCTTCTCAGTCTCGTTCTGGGTCAAAAGGACGTCCTGTCTCAAGGTAATATTCTGCTTTCTCTTTCTGTTTTTGTTTCGGGATGGGTATAAAAGCATTACATAGTACAAGGTTAATATTTGCATAAACTGCAAATCTTTCATTCTTTATTATCTTATTAGAGTTCTTCAATTTCTCAAGTTGTTCTTCACACTCAAAGTATTGTTGATTTAAGATCTTTAAATCTAAAATGCTCTTGCAGTTGATTACTTTGCCTTTTATCTTCTATGTTATTGTTAGTTTGATGTGCTCACTGCAAAGTTCACATCAAAATGGTGTAGACTCCTGGGTGCTTTAGTCTTCTTTGTTTAACTTGTCCTTGATGCTTTCCCCTTGGTTCTTTCTAAACAATATAGCAATGAGAAGCTATTAGTCTCATATATCATGCATAAAACTCCAAATCCAATCTTATTTGTTTTTTATTATCTTGTCCCTCTAACACAATCTTGTGGTAATTTGTCATATGTGGGGGTACAACGGATTTATGGTAAGTTGTAGAATACAATTTTCCAAAGGTTGCATTTTCTGGCGGCAATCTAGTTGGTAATGTGTAGTTCTGCATACTCTAGTGGGACAACGTGTAGTTACATTTATGTTATTTTCTTCTGTTTCAGGACGGATTTTAAGGGGTTTAGAACTTGCAATGACGTTATCAAACCATTAGAATCAACCAAATGATTGAAAACTATGGTTTCTCACTTTTTTTCTCCATTTTTTCCCCCTATGAAACAAGATTTCATATTCATTTGTTTCCTGCTATTTCAGGATTTTCCAACTATGTTTGCTGATCAATGTGTAACCATTTAGTAAAGACTGGTCATTAGATAGGTTCATGTCTGTTGAAACAAAATTAGAAATTGGAAAGGTTTAGGTCTGAGCAATACAGAAGTAAAGTTTAGTGTTTGAAGGGGAGACTTGGTTCATTTACTTAAGTCATTTTGGAACTGTATTCTAGGGGAAACATACTGCCTTATCAAGGTGTCGTCTTTTATCGTTTCTTTTATAAGTATGAAAAGTCACCTTGTTTGTTTTTCTAGATTTTGGATATGTGCGGCGGTTTGTGGATTTGCATATTAGGATCTTGAGTGGATAATGGTCTTGCCTGCAACTCTTTTTGTTGTGGAGGTACGATGTTTTCTAGATGGCAGCTTTGGGTCTTTTTGTGATGTCTCTCTTCTAATGAGCATCGTGAAATGTTCCATGGGTGCTAGATTGGGATCATGAAGATCACGGATTCTATGGTGGAGCTGGACTGGGGAACCAACTGCCACCTGAATTTGGATCACCACCTATTTTTTGGTAGAAGCATGTTCTAACAAAGCGAAATAAAGACTAGTTCATTCTTTTGGTATCCTGCTAATTGGTCTCTTTGACTGCTCGAATTTAAAATATTACATAGTCTCAATGGTGTAACTTGCATTGTTTTATACTTGCCATATTTTCCACTCTGGATTCTGCCAAATTGCTACTTTCATTATGGTCATGCTGAGGTGGAAGTGAAATCAAAGCAGTTGTGGAGGAAACTTGTTAAGTGGCGGGACTGGGATATTAAATTAAGTTCTTTCTGGAAATTTTGCAGATCTCCATCAAGGTCCAGATCACCAGCACCAGCTGTAAGTCAAATCTACATGTTTTAAAGTGAACGGAATAACCCAAAATTCAAATATATTGGGATCATCCGTCTTGTCTGTCTTTTTTTTGTGCTTACCTGGCCTTTTCAAAGTACATTCTCTCTTTTCTCTGTCTACATAATTATTGCTTTGTATTATGACTGGGTTAATTACAGCGTTCAAAACAATTAAGTGA</genome_strand>
        <mrna_strand>CAGGAACAATGAGTCGGTCGAGTAGGACACTTTATGTTGGCAATCTTCCTGGTGATGTTCGTGAGCGTGAAGTGGAAGATCTCTTTTACAAG...........................................................................................................................................................................................................................................................................TATGGACCGATTGCACATATTGAGCTGAAAATTCCACCAAGACCCCCTGGTTATGCTTTTGTTGAG......................................................................................................TTTGAAGAGGCTCGTGATGCTGAAGATGCTATTCGTGGTCGTGATGGCTATGATTTTGATGGGCACCGTCTGCGG...............................................................................................GTTGAGCTTGCACATGGCGGGCGTGGTAACTCATCATCAAATGATCGTTATGGTGGTGGCGGTGGCGGCCGTGGTCAGCGTGGTGGAGGAGTGTCAAGACGTTCAGATTATCGAG.....................................................................................TGTTAGTTACAGGATTACCCCATTCAGCATCGTGGCAGGATCTCAAG...................................................................................................................GATCACATGCGCCGTGCTGGGGATGTTTGTTTCTCCCAAGTTTTCCGTGACGGGAGTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACCACTGGTATAATTGATTATACAAACTATGATGACATGAAATATGCT...............................................................................................................................ATCAAAAAGCTTGATGACTCTGAGTTTCGAAATGCCTTTTCTCGTGCGACAATTCGA...................................................................................GTTAAAGAATATGACCGCAGTCGAAGTCGCAGCCGCAGTCGCAGTCGCAGTCGCTCTTACTCCAGAGGGAAGAGTGTTAGTCGAAGCCGAAGCCGTAGCCGAAGTAGAAGCCGAAGCAAGAGCAAAAG..................................................................................CAAATCTCCTAAAGTTAAGTCTTCAAAGCGCTCAAGATCTCGTTCAAGGTCTGTGTCTTCTCAGTCTCGTTCTGGGTCAAAAGGACGTCCTGTCTCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCCATCAAGGTCCAGATCACCAGCACCAGCT.............................................................................................................................................................................CGTTCAAAACAATTAAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E704114" ref_strand="+" ref_description="SGN-E704114 [FA23BE12]">
      <seq>cgcttaagaacaatgagtcggtcgagtaggacactttatgttcgtaatcttcctggtgatgttcgtgagcgtgaagtggaagatctcttttacaagtatggaccgattgcacatattgagctgaaaattccaccaagaccccctggttatgcttttgttgagtttgaagaggctcgtgatgctgaagatgctattcgtggtcgtgatggctatgattttgatgggcaccgtctgcgggttgagcttgcacatggcgggcgtggtaactcatcatcaaatgatcgttatggtggtggcggtggcggccgtggtcagcgtggtggaggagtgtcaagacgttcagattatcgagtgttagttacaggattaccccattcagcatcgtggcaggatctcaaggatcacatgcgccgtgctggggatgtttgtttctcccaagttttccgtgacgggagtggaaccactggtataattgattatacaaactatgatgacatgaaatatgctatcaaaaagcttgatgactctgagtttcgaaatgccttttctcgtgcgacaattcgagttaaagaatatgaccgcagtcgaagtcgcagccgcagtcgcagtcgcagtcgctcttactccagagggaagagtgttagtcgaagccgaagccgtagccgaagtagaagccgaagcaagagcaaaagcaaatctcctaaagttaagtcttcaaagcgctcaagatctcgttcaaggtctgtgtcttctcagtctcgttctgggtcaaaaggacgtcctgtctcaagatctccatcaaggtcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="68456" stop="62760"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68151" g_stop="68063" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="96" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68062" i_stop="67796" i_length="267">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67795" g_stop="67730" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="162" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67729" i_stop="67628" i_length="102">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67627" g_stop="67553" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="237" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67552" i_stop="67458" i_length="95">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67457" g_stop="67343" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="352" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67342" i_stop="67258" i_length="85">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67257" g_stop="67211" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="399" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67210" i_stop="67096" i_length="115">
            <donor d_prob="0.611" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67095" g_stop="67038" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="457" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="67037" i_stop="65269" i_length="1769">
            <donor d_prob="0.732" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="65268" g_stop="65219" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="507" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="65218" i_stop="65092" i_length="127">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="65091" g_stop="65035" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="564" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="65034" i_stop="64952" i_length="83">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.791" a_score="0.73"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="64951" g_stop="64830" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="692" r_length="128" r_score="0.902"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="64829" i_stop="64748" i_length="82">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.433" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="64747" g_stop="64649" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="693" r_stop="791" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="64648" i_stop="63076" i_length="1573">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="63075" g_stop="63060" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="792" r_stop="807" r_length="16" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E704114" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>794</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68151" e_stop="68063"/>
          <exon e_start="67795" e_stop="67730"/>
          <exon e_start="67627" e_stop="67553"/>
          <exon e_start="67457" e_stop="67343"/>
          <exon e_start="67257" e_stop="67211"/>
          <exon e_start="67095" e_stop="67038"/>
          <exon e_start="65268" e_stop="65219"/>
          <exon e_start="65091" e_stop="65035"/>
          <exon e_start="64951" e_stop="64830"/>
          <exon e_start="64747" e_stop="64649"/>
          <exon e_start="63075" e_stop="63060"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACAATGAGTCGGTCGAGTAGGACACTTTATGTTGGCAATCTTCCTGGTGATGTTCGTGAGCGTGAAGTGGAAGATCTCTTTTACAAGGTGCTTATACTCTAGATGGCTCCCTACATTCTTTGATATCATTTCATAATGCTTATAAACAAAAAGAAAAATGATTAGAAGTAAAATTATGTTTTTGAGTGAAATGGGTACAAATAGAGTGGTATGGATATAGGGAATTCATTATCGACAAACTCAAATTAAGGAGTATTTCTTTTGTAAGGCTTGTGCACATGTTTAATTGTTCTGTCACAATTTAACAGATTTTAACTGTTAGAAACTTATAAACAATTTGATGTGTGAGTGCAGTATGGACCGATTGCACATATTGAGCTGAAAATTCCACCAAGACCCCCTGGTTATGCTTTTGTTGAGGTGAGTTTGAGCTGCCTTGGTTCTGATGGATTTCATTAGATCAGCCTGCTATGCGCCTTTTAAAGCTATTCTGACCTTTATATTGGCCAAAAACTATAACAGTTTGAAGAGGCTCGTGATGCTGAAGATGCTATTCGTGGTCGTGATGGCTATGATTTTGATGGGCACCGTCTGCGGGTCGGTCAAACTTATAGTTAGCGTATAGTTTACACAAGGTTACTAGTTTTTGCCTTGTTGGATGTTGAATCTATTACAATTGCTCATACTGGCAGGTTGAGCTTGCACATGGCGGGCGTGGTAACTCATCATCAAATGATCGTTATGGTGGTGGCGGTGGCGGCCGTGGTCAGCGTGGTGGAGGAGTGTCAAGACGTTCAGATTATCGAGGTGTGTCTTATGGGTTATGTGCTTTCTACATTGGAATACATGTTATATCTTTTCTTATGTTCTGATATCTTTTGTTGTATTTCAGTGTTAGTTACAGGATTACCCCATTCAGCATCGTGGCAGGATCTCAAGGTGAGTCGGTGTCTTTGAGTTGTGAATCATAGGGACTTACCAAGAAAGTGATCCTCCTTTCCCTCAAAATTATTCTGTAATTTCTGAGTATTGTTAACTTTTATTTCTTATGTAGGATCACATGCGCCGTGCTGGGGATGTTTGTTTCTCCCAAGTTTTCCGTGACGGGAGTGGTAAGATTTAAACAGCTAATGGCAGATCTACTTTTTCTCTTTGAACTGGTATAATGGTTTAACTGTCAAGCACACGGAACTCCTCCATGTGGAATGGCAACCTACAATGATACACCAAGCAATAAGTCTTTGATGTGAGCTTACAATGGTACTCACTAATTGTACTGATGATTTGGAGAAAGACCTGTATACAAACTGTATATCGAAAGATGGAGAATTCTACTGTAACACACTATTCCTCTTCTTGCTCATCGTGGTTGACCTGTCATAGGAATAGGTTAAGGATACTTTTCTTTATATCATAGTGTAAATTAATGAGTTTATAATCAAGTATTATATTAAGGGTGCAAGTCTGTCATTGTTAATTATTACTGTCATTCTTTTTATATTTAGAGCTTTGGTAATAACTGTGGGTTCATACCTGGGATATCTGATAAATTTGGAAAAATGCATAGGATCTATGACTCATAATTTGGGTTTTCAGTATAAGCTGATAAGTCTTTCTTTGTCTAGAAAAATGTTATATTGAAGGAAAAATAATATAGGAGAGATCATCTCTTCAGAAAATGTAGTGGAAATAATCATCGACATATTGATAACAATATTACTTGATGAAAACAGGATAAGGTCTTGACAAACTGGAGGGGAAAATATGCAGGTGGAGCAAAAAATTGGGAGGAAAGATGGAAAACTAAATATAAAAGAAACACTGAGTAGGAAAGAAGCACAAGTTAGATGTGTTATGGTTCCTCGAGGGTAGGGTGGGGTGGGGAGACCAACGTTGCTGCAAGCTTGAGGTCGGGGTAGGTCAAAAACCTAGAGGTGTTGGGGCATCATTGGTTGGTGGCTGGGTGAGGGCAAGATAAGTTCTGCTCTCAGGAAGAAATGGTGAAAAAGATGAAGAGAGATGTGTATTTTTGTTGTCTTCCCATCTAAGAATGTCTCGCCCTTGCCCATCTATTGTCCTCTTTTGCTCTTCTAATACAATTTGTTAATTTGGATTATGATCCTGTTATTTATCCCATTTTTTTCTGAGGACTATCATCCCTTGAGACAATTTAAAAGCTGGTTATCGACTGTGCTGCCTAATGTTTGGTGGTTGGTTGGATAAATTTGTTTAGACTAATCTGATGCACCTGATGACCCCATTAACTTGTATGATGTTTTGGATTTCTTTCCCCGTTTCTTTTTGAATTTTATTTTGGTACAACTGTTTGAAGTCTTTAACTAGATGCTAACCCAATGTGCCAAAATGTTCCCACGCTCTATGTTGATGACTGCATATGCAATTTTCTCCTCTATGATTCATTTCTACGTTTTCTGATCACGTGCAGAACTTGTCATATTGGAGGGTCCACTTTTGTTTTTTAAGGGAATGAAAATTAAGAGGAAGCAAATGATATTTGATGTAGGCCGAGAAAACTTGTTTTTTGAATCTTTTTATTGATATTTTTTGATTCTTTTTTGGTTTCAGTAAACATTTTGGTGCGATTTGCAAAAGACAACTTTTGTTTTAAGCAACAGTTGTTTTTAGTTTCCTGTAAAACTTCACCATAAATTTTTCTAATTCAAGTTTACCATAAACTATTGTGATCTAACTATTCCTAGAGTTTTCTGAATCCATAATGGCACACAAAATCGCTCTTTGCTTTAACTTGTTAGTGCACAATGCTTATTTTTACCCTGTAGGAAGCATCTTGATCTTCATATTACTGTCATTTCTGGTCCACAAGTTATTCTGATATCAACAAATTTGCTTGGACTTTCAGGAACCACTGGTATAATTGATTATACAAACTATGATGACATGAAATATGCTGTAAGCCATCTTCTCTTTTCTCCTTCCCTTTAGTTGGGTTTCCTTCACCTTGATGCTGTTGACAATATTTGATTTTTCCTTTATACAACTAAGAGGTGCAGCTAATATTATCCTTTCATGTGTATAGATCAAAAAGCTTGATGACTCTGAGTTTCGAAATGCCTTTTCTCGTGCGACAATTCGAGTATGACACAAACAATTTTCAATTTCTTCAATTATCGTGTTGATGCCGTCATTTGCTATTCTCAAAACCTCCACCTTCTGTAGGTTAAAGAATATGACCGCAGTCGAAGTCGCA---GC---CGCAGTCGCAGTCGCTCTTACTCCAGAGGGAAGAGTGTTAGTCGAAGCCGAAGCCGTAGCCGAAGTAGAAGCCGAAGCAAGAGCAAAAGGTCTAACACATTACACATATATGTCTGGACTAGTGGTTTTACTTTAATGCAAATAGGGCCTTATTAATATTTGTCTTAGCAGCAAATCTCCTAAAGTTAAGTCTTCAAAGCGCTCAAGATCTCGTTCAAGGTCTGTGTCTTCTCAGTCTCGTTCTGGGTCAAAAGGACGTCCTGTCTCAAGGTAATATTCTGCTTTCTCTTTCTGTTTTTGTTTCGGGATGGGTATAAAAGCATTACATAGTACAAGGTTAATATTTGCATAAACTGCAAATCTTTCATTCTTTATTATCTTATTAGAGTTCTTCAATTTCTCAAGTTGTTCTTCACACTCAAAGTATTGTTGATTTAAGATCTTTAAATCTAAAATGCTCTTGCAGTTGATTACTTTGCCTTTTATCTTCTATGTTATTGTTAGTTTGATGTGCTCACTGCAAAGTTCACATCAAAATGGTGTAGACTCCTGGGTGCTTTAGTCTTCTTTGTTTAACTTGTCCTTGATGCTTTCCCCTTGGTTCTTTCTAAACAATATAGCAATGAGAAGCTATTAGTCTCATATATCATGCATAAAACTCCAAATCCAATCTTATTTGTTTTTTATTATCTTGTCCCTCTAACACAATCTTGTGGTAATTTGTCATATGTGGGGGTACAACGGATTTATGGTAAGTTGTAGAATACAATTTTCCAAAGGTTGCATTTTCTGGCGGCAATCTAGTTGGTAATGTGTAGTTCTGCATACTCTAGTGGGACAACGTGTAGTTACATTTATGTTATTTTCTTCTGTTTCAGGACGGATTTTAAGGGGTTTAGAACTTGCAATGACGTTATCAAACCATTAGAATCAACCAAATGATTGAAAACTATGGTTTCTCACTTTTTTTCTCCATTTTTTCCCCCTATGAAACAAGATTTCATATTCATTTGTTTCCTGCTATTTCAGGATTTTCCAACTATGTTTGCTGATCAATGTGTAACCATTTAGTAAAGACTGGTCATTAGATAGGTTCATGTCTGTTGAAACAAAATTAGAAATTGGAAAGGTTTAGGTCTGAGCAATACAGAAGTAAAGTTTAGTGTTTGAAGGGGAGACTTGGTTCATTTACTTAAGTCATTTTGGAACTGTATTCTAGGGGAAACATACTGCCTTATCAAGGTGTCGTCTTTTATCGTTTCTTTTATAAGTATGAAAAGTCACCTTGTTTGTTTTTCTAGATTTTGGATATGTGCGGCGGTTTGTGGATTTGCATATTAGGATCTTGAGTGGATAATGGTCTTGCCTGCAACTCTTTTTGTTGTGGAGGTACGATGTTTTCTAGATGGCAGCTTTGGGTCTTTTTGTGATGTCTCTCTTCTAATGAGCATCGTGAAATGTTCCATGGGTGCTAGATTGGGATCATGAAGATCACGGATTCTATGGTGGAGCTGGACTGGGGAACCAACTGCCACCTGAATTTGGATCACCACCTATTTTTTGGTAGAAGCATGTTCTAACAAAGCGAAATAAAGACTAGTTCATTCTTTTGGTATCCTGCTAATTGGTCTCTTTGACTGCTCGAATTTAAAATATTACATAGTCTCAATGGTGTAACTTGCATTGTTTTATACTTGCCATATTTTCCACTCTGGATTCTGCCAAATTGCTACTTTCATTATGGTCATGCTGAGGTGGAAGTGAAATCAAAGCAGTTGTGGAGGAAACTTGTTAAGTGGCGGGACTGGGATATTAAATTAAGTTCTTTCTGGAAATTTTGCAGATCTCCATCAAGGTCC</genome_strand>
        <mrna_strand>GAACAATGAGTCGGTCGAGTAGGACACTTTATGTTCGTAATCTTCCTGGTGATGTTCGTGAGCGTGAAGTGGAAGATCTCTTTTACAAG...........................................................................................................................................................................................................................................................................TATGGACCGATTGCACATATTGAGCTGAAAATTCCACCAAGACCCCCTGGTTATGCTTTTGTTGAG......................................................................................................TTTGAAGAGGCTCGTGATGCTGAAGATGCTATTCGTGGTCGTGATGGCTATGATTTTGATGGGCACCGTCTGCGG...............................................................................................GTTGAGCTTGCACATGGCGGGCGTGGTAACTCATCATCAAATGATCGTTATGGTGGTGGCGGTGGCGGCCGTGGTCAGCGTGGTGGAGGAGTGTCAAGACGTTCAGATTATCGAG.....................................................................................TGTTAGTTACAGGATTACCCCATTCAGCATCGTGGCAGGATCTCAAG...................................................................................................................GATCACATGCGCCGTGCTGGGGATGTTTGTTTCTCCCAAGTTTTCCGTGACGGGAGTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACCACTGGTATAATTGATTATACAAACTATGATGACATGAAATATGCT...............................................................................................................................ATCAAAAAGCTTGATGACTCTGAGTTTCGAAATGCCTTTTCTCGTGCGACAATTCGA...................................................................................GTTAAAGAATATGACCGCAGTCGAAGTCGCAGCCGCAGTCGCAGTCGCAGTCGCTCTTACTCCAGAGGGAAGAGTGTTAGTCGAAGCCGAAGCCGTAGCCGAAGTAGAAGCCGAAGCAAGAGCAAAAG..................................................................................CAAATCTCCTAAAGTTAAGTCTTCAAAGCGCTCAAGATCTCGTTCAAGGTCTGTGTCTTCTCAGTCTCGTTCTGGGTCAAAAGGACGTCCTGTCTCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCCATCAAGGTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E709677" ref_strand="+" ref_description="SGN-E709677 [FA52DB03]">
      <seq>aaattccaccaagaccccctggttatgcttttgttgagtttgaagaggctcgtgatgctgaagatgctattcgtggtcgtgatggctatgattttgatgggcaccgtctgcgggttgagcttgcacatggcgggcgtggtaactcatcatcaaatgatcgttatggtggtggcggtggcggccgtggtcagcgtggtggaggagtgtcaagacgttcagattatcgagtgttagttacaggattaccccattcagcatcgtggcaggatctcaaggatcacatgcgccgtgctggggatgtttgtttctcccaagttttccgtgacgggagtggaaccactggtataattgattatacaaactatgatgacatgaaatatgctatcaaaaagcttgatgactctgagtttccaaatgccttttctcgtgcgacaattcgagttaaagaatatgaccgcactcgaagtcgcagccgcagtcgcagtcgcagtcgctcttactccagagggaagagtgttactcgaagccgaagccgtagcccaagtacaagcccaagcaagagcaaaagcaaatctcctaaagttaactcttcaaagcgctcaagatctcgtccaaggtctgtgtcttctcagtctccttctgggccaaaggacgtcctgtctccagatctccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="68067" stop="64347"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67767" g_stop="67730" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67729" i_stop="67628" i_length="102">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67627" g_stop="67553" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="113" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67552" i_stop="67458" i_length="95">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67457" g_stop="67343" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="228" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67342" i_stop="67258" i_length="85">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67257" g_stop="67211" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="275" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67210" i_stop="67096" i_length="115">
            <donor d_prob="0.611" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67095" g_stop="67038" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="333" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67037" i_stop="65269" i_length="1769">
            <donor d_prob="0.732" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="65268" g_stop="65219" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="383" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="65218" i_stop="65092" i_length="127">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="65091" g_stop="65035" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="440" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="65034" i_stop="64952" i_length="83">
            <donor d_prob="0.978" d_score="0.98"/>
            <acceptor a_prob="0.791" a_score="0.70"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="64951" g_stop="64830" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="568" r_length="128" r_score="0.861"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="64829" i_stop="64748" i_length="82">
            <donor d_prob="0.982" d_score="0.92"/>
            <acceptor a_prob="0.433" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="64747" g_stop="64649" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="666" r_length="98" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E709677" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709677" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67767" e_stop="67730"/>
          <exon e_start="67627" e_stop="67553"/>
          <exon e_start="67457" e_stop="67343"/>
          <exon e_start="67257" e_stop="67211"/>
          <exon e_start="67095" e_stop="67038"/>
          <exon e_start="65268" e_stop="65219"/>
          <exon e_start="65091" e_stop="65035"/>
          <exon e_start="64951" e_stop="64830"/>
          <exon e_start="64747" e_stop="64649"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTCCACCAAGACCCCCTGGTTATGCTTTTGTTGAGGTGAGTTTGAGCTGCCTTGGTTCTGATGGATTTCATTAGATCAGCCTGCTATGCGCCTTTTAAAGCTATTCTGACCTTTATATTGGCCAAAAACTATAACAGTTTGAAGAGGCTCGTGATGCTGAAGATGCTATTCGTGGTCGTGATGGCTATGATTTTGATGGGCACCGTCTGCGGGTCGGTCAAACTTATAGTTAGCGTATAGTTTACACAAGGTTACTAGTTTTTGCCTTGTTGGATGTTGAATCTATTACAATTGCTCATACTGGCAGGTTGAGCTTGCACATGGCGGGCGTGGTAACTCATCATCAAATGATCGTTATGGTGGTGGCGGTGGCGGCCGTGGTCAGCGTGGTGGAGGAGTGTCAAGACGTTCAGATTATCGAGGTGTGTCTTATGGGTTATGTGCTTTCTACATTGGAATACATGTTATATCTTTTCTTATGTTCTGATATCTTTTGTTGTATTTCAGTGTTAGTTACAGGATTACCCCATTCAGCATCGTGGCAGGATCTCAAGGTGAGTCGGTGTCTTTGAGTTGTGAATCATAGGGACTTACCAAGAAAGTGATCCTCCTTTCCCTCAAAATTATTCTGTAATTTCTGAGTATTGTTAACTTTTATTTCTTATGTAGGATCACATGCGCCGTGCTGGGGATGTTTGTTTCTCCCAAGTTTTCCGTGACGGGAGTGGTAAGATTTAAACAGCTAATGGCAGATCTACTTTTTCTCTTTGAACTGGTATAATGGTTTAACTGTCAAGCACACGGAACTCCTCCATGTGGAATGGCAACCTACAATGATACACCAAGCAATAAGTCTTTGATGTGAGCTTACAATGGTACTCACTAATTGTACTGATGATTTGGAGAAAGACCTGTATACAAACTGTATATCGAAAGATGGAGAATTCTACTGTAACACACTATTCCTCTTCTTGCTCATCGTGGTTGACCTGTCATAGGAATAGGTTAAGGATACTTTTCTTTATATCATAGTGTAAATTAATGAGTTTATAATCAAGTATTATATTAAGGGTGCAAGTCTGTCATTGTTAATTATTACTGTCATTCTTTTTATATTTAGAGCTTTGGTAATAACTGTGGGTTCATACCTGGGATATCTGATAAATTTGGAAAAATGCATAGGATCTATGACTCATAATTTGGGTTTTCAGTATAAGCTGATAAGTCTTTCTTTGTCTAGAAAAATGTTATATTGAAGGAAAAATAATATAGGAGAGATCATCTCTTCAGAAAATGTAGTGGAAATAATCATCGACATATTGATAACAATATTACTTGATGAAAACAGGATAAGGTCTTGACAAACTGGAGGGGAAAATATGCAGGTGGAGCAAAAAATTGGGAGGAAAGATGGAAAACTAAATATAAAAGAAACACTGAGTAGGAAAGAAGCACAAGTTAGATGTGTTATGGTTCCTCGAGGGTAGGGTGGGGTGGGGAGACCAACGTTGCTGCAAGCTTGAGGTCGGGGTAGGTCAAAAACCTAGAGGTGTTGGGGCATCATTGGTTGGTGGCTGGGTGAGGGCAAGATAAGTTCTGCTCTCAGGAAGAAATGGTGAAAAAGATGAAGAGAGATGTGTATTTTTGTTGTCTTCCCATCTAAGAATGTCTCGCCCTTGCCCATCTATTGTCCTCTTTTGCTCTTCTAATACAATTTGTTAATTTGGATTATGATCCTGTTATTTATCCCATTTTTTTCTGAGGACTATCATCCCTTGAGACAATTTAAAAGCTGGTTATCGACTGTGCTGCCTAATGTTTGGTGGTTGGTTGGATAAATTTGTTTAGACTAATCTGATGCACCTGATGACCCCATTAACTTGTATGATGTTTTGGATTTCTTTCCCCGTTTCTTTTTGAATTTTATTTTGGTACAACTGTTTGAAGTCTTTAACTAGATGCTAACCCAATGTGCCAAAATGTTCCCACGCTCTATGTTGATGACTGCATATGCAATTTTCTCCTCTATGATTCATTTCTACGTTTTCTGATCACGTGCAGAACTTGTCATATTGGAGGGTCCACTTTTGTTTTTTAAGGGAATGAAAATTAAGAGGAAGCAAATGATATTTGATGTAGGCCGAGAAAACTTGTTTTTTGAATCTTTTTATTGATATTTTTTGATTCTTTTTTGGTTTCAGTAAACATTTTGGTGCGATTTGCAAAAGACAACTTTTGTTTTAAGCAACAGTTGTTTTTAGTTTCCTGTAAAACTTCACCATAAATTTTTCTAATTCAAGTTTACCATAAACTATTGTGATCTAACTATTCCTAGAGTTTTCTGAATCCATAATGGCACACAAAATCGCTCTTTGCTTTAACTTGTTAGTGCACAATGCTTATTTTTACCCTGTAGGAAGCATCTTGATCTTCATATTACTGTCATTTCTGGTCCACAAGTTATTCTGATATCAACAAATTTGCTTGGACTTTCAGGAACCACTGGTATAATTGATTATACAAACTATGATGACATGAAATATGCTGTAAGCCATCTTCTCTTTTCTCCTTCCCTTTAGTTGGGTTTCCTTCACCTTGATGCTGTTGACAATATTTGATTTTTCCTTTATACAACTAAGAGGTGCAGCTAATATTATCCTTTCATGTGTATAGATCAAAAAGCTTGATGACTCTGAGTTTCGAAATGCCTTTTCTCGTGCGACAATTCGAGTATGACACAAACAATTTTCAATTTCTTCAATTATCGTGTTGATGCCGTCATTTGCTATTCTCAAAACCTCCACCTTCTGTAGGTTAAAGAATATGACCGCAGTCGAAGTCGCA---GC---CGCAGTCGCAGTCGCTCTTACTCCAGAGGGAAGAGTGTTAGTCGAAGCCGAAGCCGTAGCCGAAGTAGAAGCCGAAGCAAGAGCAAAAGGTCTAACACATTACACATATATGTCTGGACTAGTGGTTTTACTTTAATGCAAATAGGGCCTTATTAATATTTGTCTTAGCAGCAAATCTCCTAAAGTTAAGTCTTCAAAGCGCTCAAGATCTCGTTCAAGGTCTGTGTCTTCTCAGTCTCGTTCTGGGTCAAAAGGACGTCCTGTCTCAAG</genome_strand>
        <mrna_strand>AAATTCCACCAAGACCCCCTGGTTATGCTTTTGTTGAG......................................................................................................TTTGAAGAGGCTCGTGATGCTGAAGATGCTATTCGTGGTCGTGATGGCTATGATTTTGATGGGCACCGTCTGCGG...............................................................................................GTTGAGCTTGCACATGGCGGGCGTGGTAACTCATCATCAAATGATCGTTATGGTGGTGGCGGTGGCGGCCGTGGTCAGCGTGGTGGAGGAGTGTCAAGACGTTCAGATTATCGAG.....................................................................................TGTTAGTTACAGGATTACCCCATTCAGCATCGTGGCAGGATCTCAAG...................................................................................................................GATCACATGCGCCGTGCTGGGGATGTTTGTTTCTCCCAAGTTTTCCGTGACGGGAGTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACCACTGGTATAATTGATTATACAAACTATGATGACATGAAATATGCT...............................................................................................................................ATCAAAAAGCTTGATGACTCTGAGTTTCCAAATGCCTTTTCTCGTGCGACAATTCGA...................................................................................GTTAAAGAATATGACCGCACTCGAAGTCGCAGCCGCAGTCGCAGTCGCAGTCGCTCTTACTCCAGAGGGAAGAGTGTTACTCGAAGCCGAAGCCGTAGCCCAAGTACAAGCCCAAGCAAGAGCAAAAG..................................................................................CAAATCTCCTAAAGTTAACTCTTCAAAGCGCTCAAGATCTCGTCCAAGGTCTGTGTCTTCTCAGTCTCCTTCTGGG-CCAAAGGACGTCCTGTCTCCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E730037" ref_strand="+" ref_description="SGN-E730037 [LA22DD12]">
      <seq>ggacactttatgttggcaatcttcctggtgatgttcgtgagcgtgaagtggaagatctcttttacaagtatggaccgattgcacatattgagctgaaaattccaccaagaccccctggttatgcttttgttgagtttgaagaggctcgtgatgctgaagatgctattcgtggtcgtgatggctatgattttgatgggcaccgtctgcgggttgagcttgcacatggcgggcgtggtaactcatcatcaaatgatcgttatggtggtggcggtggcggccgtggtcagcgtggtggaggagtgtcaagacgttcagattatcgagtgttagttacaggattaccccattcagcatcgtggcaggatctcaaggatcacatgcgccgtgctggggatgtttgtttctcccaagttttccgtgacgggagtggaaccactggtataattgattatacaaactatgatgacatgaaatatgctatcaaaaagcttgatgactctgagtttcgaaatgccttttctcgtgcgacaattcgagttaaagaatatgaccgcagtcgaagtcgcagccgcagtcgcagtcgcagtcgctcttactccagagggaagagtgttagtcgaagccgaaaccgtagccgaagtacaagccgaagcaagagcaacagccaatctcctaaagttaagtcttcaaagcgctcaagatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="68430" stop="64408"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68130" g_stop="68063" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68062" i_stop="67796" i_length="267">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67795" g_stop="67730" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="134" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67729" i_stop="67628" i_length="102">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67627" g_stop="67553" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="209" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67552" i_stop="67458" i_length="95">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67457" g_stop="67343" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="324" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67342" i_stop="67258" i_length="85">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67257" g_stop="67211" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="371" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67210" i_stop="67096" i_length="115">
            <donor d_prob="0.611" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67095" g_stop="67038" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="429" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="67037" i_stop="65269" i_length="1769">
            <donor d_prob="0.732" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="65268" g_stop="65219" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="479" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="65218" i_stop="65092" i_length="127">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="65091" g_stop="65035" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="536" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="65034" i_stop="64952" i_length="83">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.791" a_score="0.73"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="64951" g_stop="64830" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="664" r_length="128" r_score="0.877"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="64829" i_stop="64748" i_length="82">
            <donor d_prob="0.982" d_score="0.94"/>
            <acceptor a_prob="0.433" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="64747" g_stop="64708" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="665" r_stop="704" r_length="40" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E730037" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730037" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68130" e_stop="68063"/>
          <exon e_start="67795" e_stop="67730"/>
          <exon e_start="67627" e_stop="67553"/>
          <exon e_start="67457" e_stop="67343"/>
          <exon e_start="67257" e_stop="67211"/>
          <exon e_start="67095" e_stop="67038"/>
          <exon e_start="65268" e_stop="65219"/>
          <exon e_start="65091" e_stop="65035"/>
          <exon e_start="64951" e_stop="64830"/>
          <exon e_start="64747" e_stop="64708"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACACTTTATGTTGGCAATCTTCCTGGTGATGTTCGTGAGCGTGAAGTGGAAGATCTCTTTTACAAGGTGCTTATACTCTAGATGGCTCCCTACATTCTTTGATATCATTTCATAATGCTTATAAACAAAAAGAAAAATGATTAGAAGTAAAATTATGTTTTTGAGTGAAATGGGTACAAATAGAGTGGTATGGATATAGGGAATTCATTATCGACAAACTCAAATTAAGGAGTATTTCTTTTGTAAGGCTTGTGCACATGTTTAATTGTTCTGTCACAATTTAACAGATTTTAACTGTTAGAAACTTATAAACAATTTGATGTGTGAGTGCAGTATGGACCGATTGCACATATTGAGCTGAAAATTCCACCAAGACCCCCTGGTTATGCTTTTGTTGAGGTGAGTTTGAGCTGCCTTGGTTCTGATGGATTTCATTAGATCAGCCTGCTATGCGCCTTTTAAAGCTATTCTGACCTTTATATTGGCCAAAAACTATAACAGTTTGAAGAGGCTCGTGATGCTGAAGATGCTATTCGTGGTCGTGATGGCTATGATTTTGATGGGCACCGTCTGCGGGTCGGTCAAACTTATAGTTAGCGTATAGTTTACACAAGGTTACTAGTTTTTGCCTTGTTGGATGTTGAATCTATTACAATTGCTCATACTGGCAGGTTGAGCTTGCACATGGCGGGCGTGGTAACTCATCATCAAATGATCGTTATGGTGGTGGCGGTGGCGGCCGTGGTCAGCGTGGTGGAGGAGTGTCAAGACGTTCAGATTATCGAGGTGTGTCTTATGGGTTATGTGCTTTCTACATTGGAATACATGTTATATCTTTTCTTATGTTCTGATATCTTTTGTTGTATTTCAGTGTTAGTTACAGGATTACCCCATTCAGCATCGTGGCAGGATCTCAAGGTGAGTCGGTGTCTTTGAGTTGTGAATCATAGGGACTTACCAAGAAAGTGATCCTCCTTTCCCTCAAAATTATTCTGTAATTTCTGAGTATTGTTAACTTTTATTTCTTATGTAGGATCACATGCGCCGTGCTGGGGATGTTTGTTTCTCCCAAGTTTTCCGTGACGGGAGTGGTAAGATTTAAACAGCTAATGGCAGATCTACTTTTTCTCTTTGAACTGGTATAATGGTTTAACTGTCAAGCACACGGAACTCCTCCATGTGGAATGGCAACCTACAATGATACACCAAGCAATAAGTCTTTGATGTGAGCTTACAATGGTACTCACTAATTGTACTGATGATTTGGAGAAAGACCTGTATACAAACTGTATATCGAAAGATGGAGAATTCTACTGTAACACACTATTCCTCTTCTTGCTCATCGTGGTTGACCTGTCATAGGAATAGGTTAAGGATACTTTTCTTTATATCATAGTGTAAATTAATGAGTTTATAATCAAGTATTATATTAAGGGTGCAAGTCTGTCATTGTTAATTATTACTGTCATTCTTTTTATATTTAGAGCTTTGGTAATAACTGTGGGTTCATACCTGGGATATCTGATAAATTTGGAAAAATGCATAGGATCTATGACTCATAATTTGGGTTTTCAGTATAAGCTGATAAGTCTTTCTTTGTCTAGAAAAATGTTATATTGAAGGAAAAATAATATAGGAGAGATCATCTCTTCAGAAAATGTAGTGGAAATAATCATCGACATATTGATAACAATATTACTTGATGAAAACAGGATAAGGTCTTGACAAACTGGAGGGGAAAATATGCAGGTGGAGCAAAAAATTGGGAGGAAAGATGGAAAACTAAATATAAAAGAAACACTGAGTAGGAAAGAAGCACAAGTTAGATGTGTTATGGTTCCTCGAGGGTAGGGTGGGGTGGGGAGACCAACGTTGCTGCAAGCTTGAGGTCGGGGTAGGTCAAAAACCTAGAGGTGTTGGGGCATCATTGGTTGGTGGCTGGGTGAGGGCAAGATAAGTTCTGCTCTCAGGAAGAAATGGTGAAAAAGATGAAGAGAGATGTGTATTTTTGTTGTCTTCCCATCTAAGAATGTCTCGCCCTTGCCCATCTATTGTCCTCTTTTGCTCTTCTAATACAATTTGTTAATTTGGATTATGATCCTGTTATTTATCCCATTTTTTTCTGAGGACTATCATCCCTTGAGACAATTTAAAAGCTGGTTATCGACTGTGCTGCCTAATGTTTGGTGGTTGGTTGGATAAATTTGTTTAGACTAATCTGATGCACCTGATGACCCCATTAACTTGTATGATGTTTTGGATTTCTTTCCCCGTTTCTTTTTGAATTTTATTTTGGTACAACTGTTTGAAGTCTTTAACTAGATGCTAACCCAATGTGCCAAAATGTTCCCACGCTCTATGTTGATGACTGCATATGCAATTTTCTCCTCTATGATTCATTTCTACGTTTTCTGATCACGTGCAGAACTTGTCATATTGGAGGGTCCACTTTTGTTTTTTAAGGGAATGAAAATTAAGAGGAAGCAAATGATATTTGATGTAGGCCGAGAAAACTTGTTTTTTGAATCTTTTTATTGATATTTTTTGATTCTTTTTTGGTTTCAGTAAACATTTTGGTGCGATTTGCAAAAGACAACTTTTGTTTTAAGCAACAGTTGTTTTTAGTTTCCTGTAAAACTTCACCATAAATTTTTCTAATTCAAGTTTACCATAAACTATTGTGATCTAACTATTCCTAGAGTTTTCTGAATCCATAATGGCACACAAAATCGCTCTTTGCTTTAACTTGTTAGTGCACAATGCTTATTTTTACCCTGTAGGAAGCATCTTGATCTTCATATTACTGTCATTTCTGGTCCACAAGTTATTCTGATATCAACAAATTTGCTTGGACTTTCAGGAACCACTGGTATAATTGATTATACAAACTATGATGACATGAAATATGCTGTAAGCCATCTTCTCTTTTCTCCTTCCCTTTAGTTGGGTTTCCTTCACCTTGATGCTGTTGACAATATTTGATTTTTCCTTTATACAACTAAGAGGTGCAGCTAATATTATCCTTTCATGTGTATAGATCAAAAAGCTTGATGACTCTGAGTTTCGAAATGCCTTTTCTCGTGCGACAATTCGAGTATGACACAAACAATTTTCAATTTCTTCAATTATCGTGTTGATGCCGTCATTTGCTATTCTCAAAACCTCCACCTTCTGTAGGTTAAAGAATATGACCGCAGTCGAAGTCGCA---GC---CGCAGTCGCAGTCGCTCTTACTCCAGAGGGAAGAGTGTTAGTCGAAGCCGAAGCCGTAGCCGAAGTAGAAGCCGAAGCAAGAGCAAAAGGTCTAACACATTACACATATATGTCTGGACTAGTGGTTTTACTTTAATGCAAATAGGGCCTTATTAATATTTGTCTTAGCAGCAAATCTCCTAAAGTTAAGTCTTCAAAGCGCTCAAGATCT</genome_strand>
        <mrna_strand>GGACACTTTATGTTGGCAATCTTCCTGGTGATGTTCGTGAGCGTGAAGTGGAAGATCTCTTTTACAAG...........................................................................................................................................................................................................................................................................TATGGACCGATTGCACATATTGAGCTGAAAATTCCACCAAGACCCCCTGGTTATGCTTTTGTTGAG......................................................................................................TTTGAAGAGGCTCGTGATGCTGAAGATGCTATTCGTGGTCGTGATGGCTATGATTTTGATGGGCACCGTCTGCGG...............................................................................................GTTGAGCTTGCACATGGCGGGCGTGGTAACTCATCATCAAATGATCGTTATGGTGGTGGCGGTGGCGGCCGTGGTCAGCGTGGTGGAGGAGTGTCAAGACGTTCAGATTATCGAG.....................................................................................TGTTAGTTACAGGATTACCCCATTCAGCATCGTGGCAGGATCTCAAG...................................................................................................................GATCACATGCGCCGTGCTGGGGATGTTTGTTTCTCCCAAGTTTTCCGTGACGGGAGTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACCACTGGTATAATTGATTATACAAACTATGATGACATGAAATATGCT...............................................................................................................................ATCAAAAAGCTTGATGACTCTGAGTTTCGAAATGCCTTTTCTCGTGCGACAATTCGA...................................................................................GTTAAAGAATATGACCGCAGTCGAAGTCGCAGCCGCAGTCGCAGTCGCAGTCGCTCTTACTCCAGAGGGAAGAGTGTTAGTCGAAGCCGAAACCGTAGCCGAAGTACAAGCCGAAGCAAGAGCAACAG..................................................................................CCAATCTCCTAAAGTTAAGTCTTCAAAGCGCTCAAGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E253820" ref_strand="+" ref_description="SGN-E253820 [cLEG-28-M10]">
      <seq>aaaattccaccaagaccccctggttatgcttttgttgagtttgaagaggctcgtgatgctgaagatgctattcgtggtcgtgatggctatgattttgatgggcaccgtctgcgggttgagcttgcacatggcgggcgtggtaactcatcatcaaatgatcgttatggtggtggcggtggcggccgtggtcagcgtggtggaggagtgtcaagacgttcagattatcgagtgttagttacaggattaccccattcagcatcgtggcaggatctcaaggatcacatgcgccgtgctggggatgtttgtttctcccaagttttccgtgacgggagtggaaccactggtataattgattatacaaactatgatgacatgaaatatgctatcaaaaagcttgatgactctgagtttcgaaatgccttttctcgtgcgacaattcgagttaaagaatatgaccgcagtcgaagtcgcagccgcagtcgcagtcgctcttactccagagggaagagtgttagtcgaagccgaagccgtagccgaagtagaagccgaagcaagagcaaaagcaaatctcctaaagttaagtcttcaaagcgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="68068" stop="64415"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67768" g_stop="67730" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67729" i_stop="67628" i_length="102">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67627" g_stop="67553" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="114" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67552" i_stop="67458" i_length="95">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67457" g_stop="67343" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="229" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67342" i_stop="67258" i_length="85">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67257" g_stop="67211" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="276" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67210" i_stop="67096" i_length="115">
            <donor d_prob="0.611" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67095" g_stop="67038" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="334" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67037" i_stop="65269" i_length="1769">
            <donor d_prob="0.732" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="65268" g_stop="65219" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="384" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="65218" i_stop="65092" i_length="127">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="65091" g_stop="65035" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="441" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="65034" i_stop="64952" i_length="83">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.791" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="64951" g_stop="64830" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="563" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="64829" i_stop="64748" i_length="82">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.433" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="64747" g_stop="64715" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="564" r_stop="596" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E253820" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E253820" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67768" e_stop="67730"/>
          <exon e_start="67627" e_stop="67553"/>
          <exon e_start="67457" e_stop="67343"/>
          <exon e_start="67257" e_stop="67211"/>
          <exon e_start="67095" e_stop="67038"/>
          <exon e_start="65268" e_stop="65219"/>
          <exon e_start="65091" e_stop="65035"/>
          <exon e_start="64951" e_stop="64830"/>
          <exon e_start="64747" e_stop="64715"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTCCACCAAGACCCCCTGGTTATGCTTTTGTTGAGGTGAGTTTGAGCTGCCTTGGTTCTGATGGATTTCATTAGATCAGCCTGCTATGCGCCTTTTAAAGCTATTCTGACCTTTATATTGGCCAAAAACTATAACAGTTTGAAGAGGCTCGTGATGCTGAAGATGCTATTCGTGGTCGTGATGGCTATGATTTTGATGGGCACCGTCTGCGGGTCGGTCAAACTTATAGTTAGCGTATAGTTTACACAAGGTTACTAGTTTTTGCCTTGTTGGATGTTGAATCTATTACAATTGCTCATACTGGCAGGTTGAGCTTGCACATGGCGGGCGTGGTAACTCATCATCAAATGATCGTTATGGTGGTGGCGGTGGCGGCCGTGGTCAGCGTGGTGGAGGAGTGTCAAGACGTTCAGATTATCGAGGTGTGTCTTATGGGTTATGTGCTTTCTACATTGGAATACATGTTATATCTTTTCTTATGTTCTGATATCTTTTGTTGTATTTCAGTGTTAGTTACAGGATTACCCCATTCAGCATCGTGGCAGGATCTCAAGGTGAGTCGGTGTCTTTGAGTTGTGAATCATAGGGACTTACCAAGAAAGTGATCCTCCTTTCCCTCAAAATTATTCTGTAATTTCTGAGTATTGTTAACTTTTATTTCTTATGTAGGATCACATGCGCCGTGCTGGGGATGTTTGTTTCTCCCAAGTTTTCCGTGACGGGAGTGGTAAGATTTAAACAGCTAATGGCAGATCTACTTTTTCTCTTTGAACTGGTATAATGGTTTAACTGTCAAGCACACGGAACTCCTCCATGTGGAATGGCAACCTACAATGATACACCAAGCAATAAGTCTTTGATGTGAGCTTACAATGGTACTCACTAATTGTACTGATGATTTGGAGAAAGACCTGTATACAAACTGTATATCGAAAGATGGAGAATTCTACTGTAACACACTATTCCTCTTCTTGCTCATCGTGGTTGACCTGTCATAGGAATAGGTTAAGGATACTTTTCTTTATATCATAGTGTAAATTAATGAGTTTATAATCAAGTATTATATTAAGGGTGCAAGTCTGTCATTGTTAATTATTACTGTCATTCTTTTTATATTTAGAGCTTTGGTAATAACTGTGGGTTCATACCTGGGATATCTGATAAATTTGGAAAAATGCATAGGATCTATGACTCATAATTTGGGTTTTCAGTATAAGCTGATAAGTCTTTCTTTGTCTAGAAAAATGTTATATTGAAGGAAAAATAATATAGGAGAGATCATCTCTTCAGAAAATGTAGTGGAAATAATCATCGACATATTGATAACAATATTACTTGATGAAAACAGGATAAGGTCTTGACAAACTGGAGGGGAAAATATGCAGGTGGAGCAAAAAATTGGGAGGAAAGATGGAAAACTAAATATAAAAGAAACACTGAGTAGGAAAGAAGCACAAGTTAGATGTGTTATGGTTCCTCGAGGGTAGGGTGGGGTGGGGAGACCAACGTTGCTGCAAGCTTGAGGTCGGGGTAGGTCAAAAACCTAGAGGTGTTGGGGCATCATTGGTTGGTGGCTGGGTGAGGGCAAGATAAGTTCTGCTCTCAGGAAGAAATGGTGAAAAAGATGAAGAGAGATGTGTATTTTTGTTGTCTTCCCATCTAAGAATGTCTCGCCCTTGCCCATCTATTGTCCTCTTTTGCTCTTCTAATACAATTTGTTAATTTGGATTATGATCCTGTTATTTATCCCATTTTTTTCTGAGGACTATCATCCCTTGAGACAATTTAAAAGCTGGTTATCGACTGTGCTGCCTAATGTTTGGTGGTTGGTTGGATAAATTTGTTTAGACTAATCTGATGCACCTGATGACCCCATTAACTTGTATGATGTTTTGGATTTCTTTCCCCGTTTCTTTTTGAATTTTATTTTGGTACAACTGTTTGAAGTCTTTAACTAGATGCTAACCCAATGTGCCAAAATGTTCCCACGCTCTATGTTGATGACTGCATATGCAATTTTCTCCTCTATGATTCATTTCTACGTTTTCTGATCACGTGCAGAACTTGTCATATTGGAGGGTCCACTTTTGTTTTTTAAGGGAATGAAAATTAAGAGGAAGCAAATGATATTTGATGTAGGCCGAGAAAACTTGTTTTTTGAATCTTTTTATTGATATTTTTTGATTCTTTTTTGGTTTCAGTAAACATTTTGGTGCGATTTGCAAAAGACAACTTTTGTTTTAAGCAACAGTTGTTTTTAGTTTCCTGTAAAACTTCACCATAAATTTTTCTAATTCAAGTTTACCATAAACTATTGTGATCTAACTATTCCTAGAGTTTTCTGAATCCATAATGGCACACAAAATCGCTCTTTGCTTTAACTTGTTAGTGCACAATGCTTATTTTTACCCTGTAGGAAGCATCTTGATCTTCATATTACTGTCATTTCTGGTCCACAAGTTATTCTGATATCAACAAATTTGCTTGGACTTTCAGGAACCACTGGTATAATTGATTATACAAACTATGATGACATGAAATATGCTGTAAGCCATCTTCTCTTTTCTCCTTCCCTTTAGTTGGGTTTCCTTCACCTTGATGCTGTTGACAATATTTGATTTTTCCTTTATACAACTAAGAGGTGCAGCTAATATTATCCTTTCATGTGTATAGATCAAAAAGCTTGATGACTCTGAGTTTCGAAATGCCTTTTCTCGTGCGACAATTCGAGTATGACACAAACAATTTTCAATTTCTTCAATTATCGTGTTGATGCCGTCATTTGCTATTCTCAAAACCTCCACCTTCTGTAGGTTAAAGAATATGACCGCAGTCGAAGTCGCAGCCGCAGTCGCAGTCGCTCTTACTCCAGAGGGAAGAGTGTTAGTCGAAGCCGAAGCCGTAGCCGAAGTAGAAGCCGAAGCAAGAGCAAAAGGTCTAACACATTACACATATATGTCTGGACTAGTGGTTTTACTTTAATGCAAATAGGGCCTTATTAATATTTGTCTTAGCAGCAAATCTCCTAAAGTTAAGTCTTCAAAGCGCTC</genome_strand>
        <mrna_strand>AAAATTCCACCAAGACCCCCTGGTTATGCTTTTGTTGAG......................................................................................................TTTGAAGAGGCTCGTGATGCTGAAGATGCTATTCGTGGTCGTGATGGCTATGATTTTGATGGGCACCGTCTGCGG...............................................................................................GTTGAGCTTGCACATGGCGGGCGTGGTAACTCATCATCAAATGATCGTTATGGTGGTGGCGGTGGCGGCCGTGGTCAGCGTGGTGGAGGAGTGTCAAGACGTTCAGATTATCGAG.....................................................................................TGTTAGTTACAGGATTACCCCATTCAGCATCGTGGCAGGATCTCAAG...................................................................................................................GATCACATGCGCCGTGCTGGGGATGTTTGTTTCTCCCAAGTTTTCCGTGACGGGAGTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACCACTGGTATAATTGATTATACAAACTATGATGACATGAAATATGCT...............................................................................................................................ATCAAAAAGCTTGATGACTCTGAGTTTCGAAATGCCTTTTCTCGTGCGACAATTCGA...................................................................................GTTAAAGAATATGACCGCAGTCGAAGTCGCAGCCGCAGTCGCAGTCGCTCTTACTCCAGAGGGAAGAGTGTTAGTCGAAGCCGAAGCCGTAGCCGAAGTAGAAGCCGAAGCAAGAGCAAAAG..................................................................................CAAATCTCCTAAAGTTAAGTCTTCAAAGCGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E316391" ref_strand="+" ref_description="SGN-E316391 [cTOA-25-D3]">
      <seq>tgagtcggtcgagtaggacactttatgttggcaatcttcctggtgatgttcgtgagcgtgaagtggaagatctcttttacaagtatggaccgattgcacatattgagctgaaaattccaccaagaccccctggttatgcttttgttgagtttgaagaggctcgtgatgctgaagatgctattcgtggtcgtgatggctatgattttgatgggcaccgtctgcgggttgagcttgcacatggcgggcgtggtaactcatcatcaaatgatcgttatggtggtggcggtggcggccgtggtcagcgtggtggaggagtgtcaagacgttcagattatcgagtgttagttacaggattaccccattcagcatcgtggcaggatctcaaggatcacatgcgccgtgctggggatgtttgttttctcccagttttccgtgacgggagtggaaccactggtataattgattatacaaactatgatgacatgaaatatgctatcaaaaagcttgatgactctgagttncgaaatgccttttctcgtgcgacaattcgagttnaagaatatgaccgcagtcgaagtcgcagccgcagtcgcagtcgctcttactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="68445" stop="64596"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68145" g_stop="68063" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68062" i_stop="67796" i_length="267">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67795" g_stop="67730" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="149" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67729" i_stop="67628" i_length="102">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67627" g_stop="67553" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="224" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67552" i_stop="67458" i_length="95">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67457" g_stop="67343" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="339" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67342" i_stop="67258" i_length="85">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67257" g_stop="67211" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="386" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67210" i_stop="67096" i_length="115">
            <donor d_prob="0.611" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67095" g_stop="67038" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="444" r_length="58" r_score="0.948"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="67037" i_stop="65269" i_length="1769">
            <donor d_prob="0.732" d_score="0.94"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="65268" g_stop="65219" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="494" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="65218" i_stop="65092" i_length="127">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="65091" g_stop="65035" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="551" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="65034" i_stop="64952" i_length="83">
            <donor d_prob="0.978" d_score="0.98"/>
            <acceptor a_prob="0.791" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="64951" g_stop="64896" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="607" r_length="56" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E316391" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316391" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68145" e_stop="68063"/>
          <exon e_start="67795" e_stop="67730"/>
          <exon e_start="67627" e_stop="67553"/>
          <exon e_start="67457" e_stop="67343"/>
          <exon e_start="67257" e_stop="67211"/>
          <exon e_start="67095" e_stop="67038"/>
          <exon e_start="65268" e_stop="65219"/>
          <exon e_start="65091" e_stop="65035"/>
          <exon e_start="64951" e_stop="64896"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGTCGGTCGAGTAGGACACTTTATGTTGGCAATCTTCCTGGTGATGTTCGTGAGCGTGAAGTGGAAGATCTCTTTTACAAGGTGCTTATACTCTAGATGGCTCCCTACATTCTTTGATATCATTTCATAATGCTTATAAACAAAAAGAAAAATGATTAGAAGTAAAATTATGTTTTTGAGTGAAATGGGTACAAATAGAGTGGTATGGATATAGGGAATTCATTATCGACAAACTCAAATTAAGGAGTATTTCTTTTGTAAGGCTTGTGCACATGTTTAATTGTTCTGTCACAATTTAACAGATTTTAACTGTTAGAAACTTATAAACAATTTGATGTGTGAGTGCAGTATGGACCGATTGCACATATTGAGCTGAAAATTCCACCAAGACCCCCTGGTTATGCTTTTGTTGAGGTGAGTTTGAGCTGCCTTGGTTCTGATGGATTTCATTAGATCAGCCTGCTATGCGCCTTTTAAAGCTATTCTGACCTTTATATTGGCCAAAAACTATAACAGTTTGAAGAGGCTCGTGATGCTGAAGATGCTATTCGTGGTCGTGATGGCTATGATTTTGATGGGCACCGTCTGCGGGTCGGTCAAACTTATAGTTAGCGTATAGTTTACACAAGGTTACTAGTTTTTGCCTTGTTGGATGTTGAATCTATTACAATTGCTCATACTGGCAGGTTGAGCTTGCACATGGCGGGCGTGGTAACTCATCATCAAATGATCGTTATGGTGGTGGCGGTGGCGGCCGTGGTCAGCGTGGTGGAGGAGTGTCAAGACGTTCAGATTATCGAGGTGTGTCTTATGGGTTATGTGCTTTCTACATTGGAATACATGTTATATCTTTTCTTATGTTCTGATATCTTTTGTTGTATTTCAGTGTTAGTTACAGGATTACCCCATTCAGCATCGTGGCAGGATCTCAAGGTGAGTCGGTGTCTTTGAGTTGTGAATCATAGGGACTTACCAAGAAAGTGATCCTCCTTTCCCTCAAAATTATTCTGTAATTTCTGAGTATTGTTAACTTTTATTTCTTATGTAGGATCACATGCGCCGTGCTGGGGATGTTTG-TTTCTCCCAAGTTTTCCGTGACGGGAGTGGTAAGATTTAAACAGCTAATGGCAGATCTACTTTTTCTCTTTGAACTGGTATAATGGTTTAACTGTCAAGCACACGGAACTCCTCCATGTGGAATGGCAACCTACAATGATACACCAAGCAATAAGTCTTTGATGTGAGCTTACAATGGTACTCACTAATTGTACTGATGATTTGGAGAAAGACCTGTATACAAACTGTATATCGAAAGATGGAGAATTCTACTGTAACACACTATTCCTCTTCTTGCTCATCGTGGTTGACCTGTCATAGGAATAGGTTAAGGATACTTTTCTTTATATCATAGTGTAAATTAATGAGTTTATAATCAAGTATTATATTAAGGGTGCAAGTCTGTCATTGTTAATTATTACTGTCATTCTTTTTATATTTAGAGCTTTGGTAATAACTGTGGGTTCATACCTGGGATATCTGATAAATTTGGAAAAATGCATAGGATCTATGACTCATAATTTGGGTTTTCAGTATAAGCTGATAAGTCTTTCTTTGTCTAGAAAAATGTTATATTGAAGGAAAAATAATATAGGAGAGATCATCTCTTCAGAAAATGTAGTGGAAATAATCATCGACATATTGATAACAATATTACTTGATGAAAACAGGATAAGGTCTTGACAAACTGGAGGGGAAAATATGCAGGTGGAGCAAAAAATTGGGAGGAAAGATGGAAAACTAAATATAAAAGAAACACTGAGTAGGAAAGAAGCACAAGTTAGATGTGTTATGGTTCCTCGAGGGTAGGGTGGGGTGGGGAGACCAACGTTGCTGCAAGCTTGAGGTCGGGGTAGGTCAAAAACCTAGAGGTGTTGGGGCATCATTGGTTGGTGGCTGGGTGAGGGCAAGATAAGTTCTGCTCTCAGGAAGAAATGGTGAAAAAGATGAAGAGAGATGTGTATTTTTGTTGTCTTCCCATCTAAGAATGTCTCGCCCTTGCCCATCTATTGTCCTCTTTTGCTCTTCTAATACAATTTGTTAATTTGGATTATGATCCTGTTATTTATCCCATTTTTTTCTGAGGACTATCATCCCTTGAGACAATTTAAAAGCTGGTTATCGACTGTGCTGCCTAATGTTTGGTGGTTGGTTGGATAAATTTGTTTAGACTAATCTGATGCACCTGATGACCCCATTAACTTGTATGATGTTTTGGATTTCTTTCCCCGTTTCTTTTTGAATTTTATTTTGGTACAACTGTTTGAAGTCTTTAACTAGATGCTAACCCAATGTGCCAAAATGTTCCCACGCTCTATGTTGATGACTGCATATGCAATTTTCTCCTCTATGATTCATTTCTACGTTTTCTGATCACGTGCAGAACTTGTCATATTGGAGGGTCCACTTTTGTTTTTTAAGGGAATGAAAATTAAGAGGAAGCAAATGATATTTGATGTAGGCCGAGAAAACTTGTTTTTTGAATCTTTTTATTGATATTTTTTGATTCTTTTTTGGTTTCAGTAAACATTTTGGTGCGATTTGCAAAAGACAACTTTTGTTTTAAGCAACAGTTGTTTTTAGTTTCCTGTAAAACTTCACCATAAATTTTTCTAATTCAAGTTTACCATAAACTATTGTGATCTAACTATTCCTAGAGTTTTCTGAATCCATAATGGCACACAAAATCGCTCTTTGCTTTAACTTGTTAGTGCACAATGCTTATTTTTACCCTGTAGGAAGCATCTTGATCTTCATATTACTGTCATTTCTGGTCCACAAGTTATTCTGATATCAACAAATTTGCTTGGACTTTCAGGAACCACTGGTATAATTGATTATACAAACTATGATGACATGAAATATGCTGTAAGCCATCTTCTCTTTTCTCCTTCCCTTTAGTTGGGTTTCCTTCACCTTGATGCTGTTGACAATATTTGATTTTTCCTTTATACAACTAAGAGGTGCAGCTAATATTATCCTTTCATGTGTATAGATCAAAAAGCTTGATGACTCTGAGTTTCGAAATGCCTTTTCTCGTGCGACAATTCGAGTATGACACAAACAATTTTCAATTTCTTCAATTATCGTGTTGATGCCGTCATTTGCTATTCTCAAAACCTCCACCTTCTGTAGGTTAAAGAATATGACCGCAGTCGAAGTCGCAGCCGCAGTCGCAGTCGCTCTTACTC</genome_strand>
        <mrna_strand>TGAGTCGGTCGAGTAGGACACTTTATGTTGGCAATCTTCCTGGTGATGTTCGTGAGCGTGAAGTGGAAGATCTCTTTTACAAG...........................................................................................................................................................................................................................................................................TATGGACCGATTGCACATATTGAGCTGAAAATTCCACCAAGACCCCCTGGTTATGCTTTTGTTGAG......................................................................................................TTTGAAGAGGCTCGTGATGCTGAAGATGCTATTCGTGGTCGTGATGGCTATGATTTTGATGGGCACCGTCTGCGG...............................................................................................GTTGAGCTTGCACATGGCGGGCGTGGTAACTCATCATCAAATGATCGTTATGGTGGTGGCGGTGGCGGCCGTGGTCAGCGTGGTGGAGGAGTGTCAAGACGTTCAGATTATCGAG.....................................................................................TGTTAGTTACAGGATTACCCCATTCAGCATCGTGGCAGGATCTCAAG...................................................................................................................GATCACATGCGCCGTGCTGGGGATGTTTGTTTTCTCCC-AGTTTTCCGTGACGGGAGTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACCACTGGTATAATTGATTATACAAACTATGATGACATGAAATATGCT...............................................................................................................................ATCAAAAAGCTTGATGACTCTGAGTTNCGAAATGCCTTTTCTCGTGCGACAATTCGA...................................................................................GTTNAAGAATATGACCGCAGTCGAAGTCGCAGCCGCAGTCGCAGTCGCTCTTACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E341527" ref_strand="+" ref_description="SGN-E341527 [cTOE-23-M17]">
      <seq>caggaacaatgagtcggtcgagtaggacactttatgttggcaatcttcctggtgatgttcgtgagcgtgaagtggaagatctcttttacaagtatggaccgattgcacatattgagctgaaaattccaccaagaccccctggttatgcttttgttgagtttgaagaggctcgtgatgctgaagatgctattcgtggtcgtgatggctatgattttgatgggcaccgtctgcgggttgagcttgcacatggcgggcgtggtaactcatcatcaaatgatcgttatggtggtggcggtggcggccgtggtcagcgtggtggaggagtgtcaagacgttcagattatcgagtgttagttacaggattaccccattcagcatcgtggcaggatctcaaggatcacatgcgccgtgctggggatgtttgtttctcccaagttttccgtgacgggagtggaaccactggtataattgattatacaaactatgatgacatgaaatatgctatcaaaaagcttgatgactctgagtttcgaaatgccttttctcgtgcgacaattcgagttaaagaatatgaccgcagtcgaagtcgcagccgcagtcgcagtcgctcttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="68454" stop="64598"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68154" g_stop="68063" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68062" i_stop="67796" i_length="267">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67795" g_stop="67730" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="158" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67729" i_stop="67628" i_length="102">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67627" g_stop="67553" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="233" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67552" i_stop="67458" i_length="95">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67457" g_stop="67343" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="348" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67342" i_stop="67258" i_length="85">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67257" g_stop="67211" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="395" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67210" i_stop="67096" i_length="115">
            <donor d_prob="0.611" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67095" g_stop="67038" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="453" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="67037" i_stop="65269" i_length="1769">
            <donor d_prob="0.732" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="65268" g_stop="65219" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="503" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="65218" i_stop="65092" i_length="127">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="65091" g_stop="65035" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="560" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="65034" i_stop="64952" i_length="83">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.791" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="64951" g_stop="64898" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="614" r_length="54" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E341527" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341527" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68154" e_stop="68063"/>
          <exon e_start="67795" e_stop="67730"/>
          <exon e_start="67627" e_stop="67553"/>
          <exon e_start="67457" e_stop="67343"/>
          <exon e_start="67257" e_stop="67211"/>
          <exon e_start="67095" e_stop="67038"/>
          <exon e_start="65268" e_stop="65219"/>
          <exon e_start="65091" e_stop="65035"/>
          <exon e_start="64951" e_stop="64898"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGAACAATGAGTCGGTCGAGTAGGACACTTTATGTTGGCAATCTTCCTGGTGATGTTCGTGAGCGTGAAGTGGAAGATCTCTTTTACAAGGTGCTTATACTCTAGATGGCTCCCTACATTCTTTGATATCATTTCATAATGCTTATAAACAAAAAGAAAAATGATTAGAAGTAAAATTATGTTTTTGAGTGAAATGGGTACAAATAGAGTGGTATGGATATAGGGAATTCATTATCGACAAACTCAAATTAAGGAGTATTTCTTTTGTAAGGCTTGTGCACATGTTTAATTGTTCTGTCACAATTTAACAGATTTTAACTGTTAGAAACTTATAAACAATTTGATGTGTGAGTGCAGTATGGACCGATTGCACATATTGAGCTGAAAATTCCACCAAGACCCCCTGGTTATGCTTTTGTTGAGGTGAGTTTGAGCTGCCTTGGTTCTGATGGATTTCATTAGATCAGCCTGCTATGCGCCTTTTAAAGCTATTCTGACCTTTATATTGGCCAAAAACTATAACAGTTTGAAGAGGCTCGTGATGCTGAAGATGCTATTCGTGGTCGTGATGGCTATGATTTTGATGGGCACCGTCTGCGGGTCGGTCAAACTTATAGTTAGCGTATAGTTTACACAAGGTTACTAGTTTTTGCCTTGTTGGATGTTGAATCTATTACAATTGCTCATACTGGCAGGTTGAGCTTGCACATGGCGGGCGTGGTAACTCATCATCAAATGATCGTTATGGTGGTGGCGGTGGCGGCCGTGGTCAGCGTGGTGGAGGAGTGTCAAGACGTTCAGATTATCGAGGTGTGTCTTATGGGTTATGTGCTTTCTACATTGGAATACATGTTATATCTTTTCTTATGTTCTGATATCTTTTGTTGTATTTCAGTGTTAGTTACAGGATTACCCCATTCAGCATCGTGGCAGGATCTCAAGGTGAGTCGGTGTCTTTGAGTTGTGAATCATAGGGACTTACCAAGAAAGTGATCCTCCTTTCCCTCAAAATTATTCTGTAATTTCTGAGTATTGTTAACTTTTATTTCTTATGTAGGATCACATGCGCCGTGCTGGGGATGTTTGTTTCTCCCAAGTTTTCCGTGACGGGAGTGGTAAGATTTAAACAGCTAATGGCAGATCTACTTTTTCTCTTTGAACTGGTATAATGGTTTAACTGTCAAGCACACGGAACTCCTCCATGTGGAATGGCAACCTACAATGATACACCAAGCAATAAGTCTTTGATGTGAGCTTACAATGGTACTCACTAATTGTACTGATGATTTGGAGAAAGACCTGTATACAAACTGTATATCGAAAGATGGAGAATTCTACTGTAACACACTATTCCTCTTCTTGCTCATCGTGGTTGACCTGTCATAGGAATAGGTTAAGGATACTTTTCTTTATATCATAGTGTAAATTAATGAGTTTATAATCAAGTATTATATTAAGGGTGCAAGTCTGTCATTGTTAATTATTACTGTCATTCTTTTTATATTTAGAGCTTTGGTAATAACTGTGGGTTCATACCTGGGATATCTGATAAATTTGGAAAAATGCATAGGATCTATGACTCATAATTTGGGTTTTCAGTATAAGCTGATAAGTCTTTCTTTGTCTAGAAAAATGTTATATTGAAGGAAAAATAATATAGGAGAGATCATCTCTTCAGAAAATGTAGTGGAAATAATCATCGACATATTGATAACAATATTACTTGATGAAAACAGGATAAGGTCTTGACAAACTGGAGGGGAAAATATGCAGGTGGAGCAAAAAATTGGGAGGAAAGATGGAAAACTAAATATAAAAGAAACACTGAGTAGGAAAGAAGCACAAGTTAGATGTGTTATGGTTCCTCGAGGGTAGGGTGGGGTGGGGAGACCAACGTTGCTGCAAGCTTGAGGTCGGGGTAGGTCAAAAACCTAGAGGTGTTGGGGCATCATTGGTTGGTGGCTGGGTGAGGGCAAGATAAGTTCTGCTCTCAGGAAGAAATGGTGAAAAAGATGAAGAGAGATGTGTATTTTTGTTGTCTTCCCATCTAAGAATGTCTCGCCCTTGCCCATCTATTGTCCTCTTTTGCTCTTCTAATACAATTTGTTAATTTGGATTATGATCCTGTTATTTATCCCATTTTTTTCTGAGGACTATCATCCCTTGAGACAATTTAAAAGCTGGTTATCGACTGTGCTGCCTAATGTTTGGTGGTTGGTTGGATAAATTTGTTTAGACTAATCTGATGCACCTGATGACCCCATTAACTTGTATGATGTTTTGGATTTCTTTCCCCGTTTCTTTTTGAATTTTATTTTGGTACAACTGTTTGAAGTCTTTAACTAGATGCTAACCCAATGTGCCAAAATGTTCCCACGCTCTATGTTGATGACTGCATATGCAATTTTCTCCTCTATGATTCATTTCTACGTTTTCTGATCACGTGCAGAACTTGTCATATTGGAGGGTCCACTTTTGTTTTTTAAGGGAATGAAAATTAAGAGGAAGCAAATGATATTTGATGTAGGCCGAGAAAACTTGTTTTTTGAATCTTTTTATTGATATTTTTTGATTCTTTTTTGGTTTCAGTAAACATTTTGGTGCGATTTGCAAAAGACAACTTTTGTTTTAAGCAACAGTTGTTTTTAGTTTCCTGTAAAACTTCACCATAAATTTTTCTAATTCAAGTTTACCATAAACTATTGTGATCTAACTATTCCTAGAGTTTTCTGAATCCATAATGGCACACAAAATCGCTCTTTGCTTTAACTTGTTAGTGCACAATGCTTATTTTTACCCTGTAGGAAGCATCTTGATCTTCATATTACTGTCATTTCTGGTCCACAAGTTATTCTGATATCAACAAATTTGCTTGGACTTTCAGGAACCACTGGTATAATTGATTATACAAACTATGATGACATGAAATATGCTGTAAGCCATCTTCTCTTTTCTCCTTCCCTTTAGTTGGGTTTCCTTCACCTTGATGCTGTTGACAATATTTGATTTTTCCTTTATACAACTAAGAGGTGCAGCTAATATTATCCTTTCATGTGTATAGATCAAAAAGCTTGATGACTCTGAGTTTCGAAATGCCTTTTCTCGTGCGACAATTCGAGTATGACACAAACAATTTTCAATTTCTTCAATTATCGTGTTGATGCCGTCATTTGCTATTCTCAAAACCTCCACCTTCTGTAGGTTAAAGAATATGACCGCAGTCGAAGTCGCAGCCGCAGTCGCAGTCGCTCTTAC</genome_strand>
        <mrna_strand>CAGGAACAATGAGTCGGTCGAGTAGGACACTTTATGTTGGCAATCTTCCTGGTGATGTTCGTGAGCGTGAAGTGGAAGATCTCTTTTACAAG...........................................................................................................................................................................................................................................................................TATGGACCGATTGCACATATTGAGCTGAAAATTCCACCAAGACCCCCTGGTTATGCTTTTGTTGAG......................................................................................................TTTGAAGAGGCTCGTGATGCTGAAGATGCTATTCGTGGTCGTGATGGCTATGATTTTGATGGGCACCGTCTGCGG...............................................................................................GTTGAGCTTGCACATGGCGGGCGTGGTAACTCATCATCAAATGATCGTTATGGTGGTGGCGGTGGCGGCCGTGGTCAGCGTGGTGGAGGAGTGTCAAGACGTTCAGATTATCGAG.....................................................................................TGTTAGTTACAGGATTACCCCATTCAGCATCGTGGCAGGATCTCAAG...................................................................................................................GATCACATGCGCCGTGCTGGGGATGTTTGTTTCTCCCAAGTTTTCCGTGACGGGAGTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACCACTGGTATAATTGATTATACAAACTATGATGACATGAAATATGCT...............................................................................................................................ATCAAAAAGCTTGATGACTCTGAGTTTCGAAATGCCTTTTCTCGTGCGACAATTCGA...................................................................................GTTAAAGAATATGACCGCAGTCGAAGTCGCAGCCGCAGTCGCAGTCGCTCTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E256458" ref_strand="+" ref_description="SGN-E256458 [cLEG-38-D1]">
      <seq>aaaattccaccaagaccccctggttatgcttttgttgagtttgaagaggctcgtgatgctgaagatgctattcgtggtcgtgatggctatgattttgatgggcaccgtctgcgggttgagcttgcacatggcgggcgtggtaactcatcatcaaatgatcgttatggtggtggcggtggcggccgtggtcaccgtggtggaggagtgtcaagacgttcagattatcgagtgttagttacaggattaccccattcagcatcgtggcaggatctcaaggatcacatgcgccgtgctggggatgtttgtttctcccaagttttccgtgacgggagtggaaccactggtataattgattatacaaactatgatgacatgaaatatgctatcaaaaagcttgatgactctgagtttcgaaatgccttttctcgtgcgacaattcgagttaaagaatatgaccgcagtcgaagtcgcagccgcagtcgcagtcgctcttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="68068" stop="64598"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67768" g_stop="67730" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67729" i_stop="67628" i_length="102">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67627" g_stop="67553" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="114" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67552" i_stop="67458" i_length="95">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67457" g_stop="67343" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="229" r_length="115" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67342" i_stop="67258" i_length="85">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67257" g_stop="67211" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="276" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67210" i_stop="67096" i_length="115">
            <donor d_prob="0.611" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67095" g_stop="67038" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="334" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67037" i_stop="65269" i_length="1769">
            <donor d_prob="0.732" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="65268" g_stop="65219" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="384" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="65218" i_stop="65092" i_length="127">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="65091" g_stop="65035" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="441" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="65034" i_stop="64952" i_length="83">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.791" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="64951" g_stop="64898" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="495" r_length="54" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E256458" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256458" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67768" e_stop="67730"/>
          <exon e_start="67627" e_stop="67553"/>
          <exon e_start="67457" e_stop="67343"/>
          <exon e_start="67257" e_stop="67211"/>
          <exon e_start="67095" e_stop="67038"/>
          <exon e_start="65268" e_stop="65219"/>
          <exon e_start="65091" e_stop="65035"/>
          <exon e_start="64951" e_stop="64898"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTCCACCAAGACCCCCTGGTTATGCTTTTGTTGAGGTGAGTTTGAGCTGCCTTGGTTCTGATGGATTTCATTAGATCAGCCTGCTATGCGCCTTTTAAAGCTATTCTGACCTTTATATTGGCCAAAAACTATAACAGTTTGAAGAGGCTCGTGATGCTGAAGATGCTATTCGTGGTCGTGATGGCTATGATTTTGATGGGCACCGTCTGCGGGTCGGTCAAACTTATAGTTAGCGTATAGTTTACACAAGGTTACTAGTTTTTGCCTTGTTGGATGTTGAATCTATTACAATTGCTCATACTGGCAGGTTGAGCTTGCACATGGCGGGCGTGGTAACTCATCATCAAATGATCGTTATGGTGGTGGCGGTGGCGGCCGTGGTCAGCGTGGTGGAGGAGTGTCAAGACGTTCAGATTATCGAGGTGTGTCTTATGGGTTATGTGCTTTCTACATTGGAATACATGTTATATCTTTTCTTATGTTCTGATATCTTTTGTTGTATTTCAGTGTTAGTTACAGGATTACCCCATTCAGCATCGTGGCAGGATCTCAAGGTGAGTCGGTGTCTTTGAGTTGTGAATCATAGGGACTTACCAAGAAAGTGATCCTCCTTTCCCTCAAAATTATTCTGTAATTTCTGAGTATTGTTAACTTTTATTTCTTATGTAGGATCACATGCGCCGTGCTGGGGATGTTTGTTTCTCCCAAGTTTTCCGTGACGGGAGTGGTAAGATTTAAACAGCTAATGGCAGATCTACTTTTTCTCTTTGAACTGGTATAATGGTTTAACTGTCAAGCACACGGAACTCCTCCATGTGGAATGGCAACCTACAATGATACACCAAGCAATAAGTCTTTGATGTGAGCTTACAATGGTACTCACTAATTGTACTGATGATTTGGAGAAAGACCTGTATACAAACTGTATATCGAAAGATGGAGAATTCTACTGTAACACACTATTCCTCTTCTTGCTCATCGTGGTTGACCTGTCATAGGAATAGGTTAAGGATACTTTTCTTTATATCATAGTGTAAATTAATGAGTTTATAATCAAGTATTATATTAAGGGTGCAAGTCTGTCATTGTTAATTATTACTGTCATTCTTTTTATATTTAGAGCTTTGGTAATAACTGTGGGTTCATACCTGGGATATCTGATAAATTTGGAAAAATGCATAGGATCTATGACTCATAATTTGGGTTTTCAGTATAAGCTGATAAGTCTTTCTTTGTCTAGAAAAATGTTATATTGAAGGAAAAATAATATAGGAGAGATCATCTCTTCAGAAAATGTAGTGGAAATAATCATCGACATATTGATAACAATATTACTTGATGAAAACAGGATAAGGTCTTGACAAACTGGAGGGGAAAATATGCAGGTGGAGCAAAAAATTGGGAGGAAAGATGGAAAACTAAATATAAAAGAAACACTGAGTAGGAAAGAAGCACAAGTTAGATGTGTTATGGTTCCTCGAGGGTAGGGTGGGGTGGGGAGACCAACGTTGCTGCAAGCTTGAGGTCGGGGTAGGTCAAAAACCTAGAGGTGTTGGGGCATCATTGGTTGGTGGCTGGGTGAGGGCAAGATAAGTTCTGCTCTCAGGAAGAAATGGTGAAAAAGATGAAGAGAGATGTGTATTTTTGTTGTCTTCCCATCTAAGAATGTCTCGCCCTTGCCCATCTATTGTCCTCTTTTGCTCTTCTAATACAATTTGTTAATTTGGATTATGATCCTGTTATTTATCCCATTTTTTTCTGAGGACTATCATCCCTTGAGACAATTTAAAAGCTGGTTATCGACTGTGCTGCCTAATGTTTGGTGGTTGGTTGGATAAATTTGTTTAGACTAATCTGATGCACCTGATGACCCCATTAACTTGTATGATGTTTTGGATTTCTTTCCCCGTTTCTTTTTGAATTTTATTTTGGTACAACTGTTTGAAGTCTTTAACTAGATGCTAACCCAATGTGCCAAAATGTTCCCACGCTCTATGTTGATGACTGCATATGCAATTTTCTCCTCTATGATTCATTTCTACGTTTTCTGATCACGTGCAGAACTTGTCATATTGGAGGGTCCACTTTTGTTTTTTAAGGGAATGAAAATTAAGAGGAAGCAAATGATATTTGATGTAGGCCGAGAAAACTTGTTTTTTGAATCTTTTTATTGATATTTTTTGATTCTTTTTTGGTTTCAGTAAACATTTTGGTGCGATTTGCAAAAGACAACTTTTGTTTTAAGCAACAGTTGTTTTTAGTTTCCTGTAAAACTTCACCATAAATTTTTCTAATTCAAGTTTACCATAAACTATTGTGATCTAACTATTCCTAGAGTTTTCTGAATCCATAATGGCACACAAAATCGCTCTTTGCTTTAACTTGTTAGTGCACAATGCTTATTTTTACCCTGTAGGAAGCATCTTGATCTTCATATTACTGTCATTTCTGGTCCACAAGTTATTCTGATATCAACAAATTTGCTTGGACTTTCAGGAACCACTGGTATAATTGATTATACAAACTATGATGACATGAAATATGCTGTAAGCCATCTTCTCTTTTCTCCTTCCCTTTAGTTGGGTTTCCTTCACCTTGATGCTGTTGACAATATTTGATTTTTCCTTTATACAACTAAGAGGTGCAGCTAATATTATCCTTTCATGTGTATAGATCAAAAAGCTTGATGACTCTGAGTTTCGAAATGCCTTTTCTCGTGCGACAATTCGAGTATGACACAAACAATTTTCAATTTCTTCAATTATCGTGTTGATGCCGTCATTTGCTATTCTCAAAACCTCCACCTTCTGTAGGTTAAAGAATATGACCGCAGTCGAAGTCGCAGCCGCAGTCGCAGTCGCTCTTAC</genome_strand>
        <mrna_strand>AAAATTCCACCAAGACCCCCTGGTTATGCTTTTGTTGAG......................................................................................................TTTGAAGAGGCTCGTGATGCTGAAGATGCTATTCGTGGTCGTGATGGCTATGATTTTGATGGGCACCGTCTGCGG...............................................................................................GTTGAGCTTGCACATGGCGGGCGTGGTAACTCATCATCAAATGATCGTTATGGTGGTGGCGGTGGCGGCCGTGGTCACCGTGGTGGAGGAGTGTCAAGACGTTCAGATTATCGAG.....................................................................................TGTTAGTTACAGGATTACCCCATTCAGCATCGTGGCAGGATCTCAAG...................................................................................................................GATCACATGCGCCGTGCTGGGGATGTTTGTTTCTCCCAAGTTTTCCGTGACGGGAGTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACCACTGGTATAATTGATTATACAAACTATGATGACATGAAATATGCT...............................................................................................................................ATCAAAAAGCTTGATGACTCTGAGTTTCGAAATGCCTTTTCTCGTGCGACAATTCGA...................................................................................GTTAAAGAATATGACCGCAGTCGAAGTCGCAGCCGCAGTCGCAGTCGCTCTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E288997" ref_strand="+" ref_description="SGN-E288997 [cLES-17-L5]">
      <seq>gaacaatgagtcggtcgagtaggacactttatgttggcaatcttcctggtgatgttcgtgagcgtgaagtggaagatctcttttacaagtatggaccgattgcacatattgagctgaaaattccaccaagaccccctggttatgcttttgttgagtttgaagaggctcgtgatgctgaagatgctattcgtggtcgtgatggctatgattttgatgggcaccgtctgcgggttgagcttgcacatggcgggcgtggtaactcatcatcaaatgatcgttatggtggtggcggtggcggccgtggtcagcgtggtggaggagtgtcaagacgttcagattatcgagtgttagttacaggattaccccattcagcatcgtggcaggatctcaaggatcacatgcgccgtgctggggatgtttgtttctcccaagttttccgtgacgggagtggaaccactggtataattgattatacaaactatgatgacatgaaatatgctatcaaaaagcttgatgactctgagtttcgaaatgccttttctcgtgcgacaattcgagttaaagaatatgaccgcagtcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="68451" stop="64629"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68151" g_stop="68063" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68062" i_stop="67796" i_length="267">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67795" g_stop="67730" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="155" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67729" i_stop="67628" i_length="102">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67627" g_stop="67553" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="230" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67552" i_stop="67458" i_length="95">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67457" g_stop="67343" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="345" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67342" i_stop="67258" i_length="85">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67257" g_stop="67211" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="392" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67210" i_stop="67096" i_length="115">
            <donor d_prob="0.611" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67095" g_stop="67038" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="450" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="67037" i_stop="65269" i_length="1769">
            <donor d_prob="0.732" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="65268" g_stop="65219" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="500" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="65218" i_stop="65092" i_length="127">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="65091" g_stop="65035" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="557" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="65034" i_stop="64952" i_length="83">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.791" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="64951" g_stop="64929" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="580" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E288997" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288997" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68151" e_stop="68063"/>
          <exon e_start="67795" e_stop="67730"/>
          <exon e_start="67627" e_stop="67553"/>
          <exon e_start="67457" e_stop="67343"/>
          <exon e_start="67257" e_stop="67211"/>
          <exon e_start="67095" e_stop="67038"/>
          <exon e_start="65268" e_stop="65219"/>
          <exon e_start="65091" e_stop="65035"/>
          <exon e_start="64951" e_stop="64929"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACAATGAGTCGGTCGAGTAGGACACTTTATGTTGGCAATCTTCCTGGTGATGTTCGTGAGCGTGAAGTGGAAGATCTCTTTTACAAGGTGCTTATACTCTAGATGGCTCCCTACATTCTTTGATATCATTTCATAATGCTTATAAACAAAAAGAAAAATGATTAGAAGTAAAATTATGTTTTTGAGTGAAATGGGTACAAATAGAGTGGTATGGATATAGGGAATTCATTATCGACAAACTCAAATTAAGGAGTATTTCTTTTGTAAGGCTTGTGCACATGTTTAATTGTTCTGTCACAATTTAACAGATTTTAACTGTTAGAAACTTATAAACAATTTGATGTGTGAGTGCAGTATGGACCGATTGCACATATTGAGCTGAAAATTCCACCAAGACCCCCTGGTTATGCTTTTGTTGAGGTGAGTTTGAGCTGCCTTGGTTCTGATGGATTTCATTAGATCAGCCTGCTATGCGCCTTTTAAAGCTATTCTGACCTTTATATTGGCCAAAAACTATAACAGTTTGAAGAGGCTCGTGATGCTGAAGATGCTATTCGTGGTCGTGATGGCTATGATTTTGATGGGCACCGTCTGCGGGTCGGTCAAACTTATAGTTAGCGTATAGTTTACACAAGGTTACTAGTTTTTGCCTTGTTGGATGTTGAATCTATTACAATTGCTCATACTGGCAGGTTGAGCTTGCACATGGCGGGCGTGGTAACTCATCATCAAATGATCGTTATGGTGGTGGCGGTGGCGGCCGTGGTCAGCGTGGTGGAGGAGTGTCAAGACGTTCAGATTATCGAGGTGTGTCTTATGGGTTATGTGCTTTCTACATTGGAATACATGTTATATCTTTTCTTATGTTCTGATATCTTTTGTTGTATTTCAGTGTTAGTTACAGGATTACCCCATTCAGCATCGTGGCAGGATCTCAAGGTGAGTCGGTGTCTTTGAGTTGTGAATCATAGGGACTTACCAAGAAAGTGATCCTCCTTTCCCTCAAAATTATTCTGTAATTTCTGAGTATTGTTAACTTTTATTTCTTATGTAGGATCACATGCGCCGTGCTGGGGATGTTTGTTTCTCCCAAGTTTTCCGTGACGGGAGTGGTAAGATTTAAACAGCTAATGGCAGATCTACTTTTTCTCTTTGAACTGGTATAATGGTTTAACTGTCAAGCACACGGAACTCCTCCATGTGGAATGGCAACCTACAATGATACACCAAGCAATAAGTCTTTGATGTGAGCTTACAATGGTACTCACTAATTGTACTGATGATTTGGAGAAAGACCTGTATACAAACTGTATATCGAAAGATGGAGAATTCTACTGTAACACACTATTCCTCTTCTTGCTCATCGTGGTTGACCTGTCATAGGAATAGGTTAAGGATACTTTTCTTTATATCATAGTGTAAATTAATGAGTTTATAATCAAGTATTATATTAAGGGTGCAAGTCTGTCATTGTTAATTATTACTGTCATTCTTTTTATATTTAGAGCTTTGGTAATAACTGTGGGTTCATACCTGGGATATCTGATAAATTTGGAAAAATGCATAGGATCTATGACTCATAATTTGGGTTTTCAGTATAAGCTGATAAGTCTTTCTTTGTCTAGAAAAATGTTATATTGAAGGAAAAATAATATAGGAGAGATCATCTCTTCAGAAAATGTAGTGGAAATAATCATCGACATATTGATAACAATATTACTTGATGAAAACAGGATAAGGTCTTGACAAACTGGAGGGGAAAATATGCAGGTGGAGCAAAAAATTGGGAGGAAAGATGGAAAACTAAATATAAAAGAAACACTGAGTAGGAAAGAAGCACAAGTTAGATGTGTTATGGTTCCTCGAGGGTAGGGTGGGGTGGGGAGACCAACGTTGCTGCAAGCTTGAGGTCGGGGTAGGTCAAAAACCTAGAGGTGTTGGGGCATCATTGGTTGGTGGCTGGGTGAGGGCAAGATAAGTTCTGCTCTCAGGAAGAAATGGTGAAAAAGATGAAGAGAGATGTGTATTTTTGTTGTCTTCCCATCTAAGAATGTCTCGCCCTTGCCCATCTATTGTCCTCTTTTGCTCTTCTAATACAATTTGTTAATTTGGATTATGATCCTGTTATTTATCCCATTTTTTTCTGAGGACTATCATCCCTTGAGACAATTTAAAAGCTGGTTATCGACTGTGCTGCCTAATGTTTGGTGGTTGGTTGGATAAATTTGTTTAGACTAATCTGATGCACCTGATGACCCCATTAACTTGTATGATGTTTTGGATTTCTTTCCCCGTTTCTTTTTGAATTTTATTTTGGTACAACTGTTTGAAGTCTTTAACTAGATGCTAACCCAATGTGCCAAAATGTTCCCACGCTCTATGTTGATGACTGCATATGCAATTTTCTCCTCTATGATTCATTTCTACGTTTTCTGATCACGTGCAGAACTTGTCATATTGGAGGGTCCACTTTTGTTTTTTAAGGGAATGAAAATTAAGAGGAAGCAAATGATATTTGATGTAGGCCGAGAAAACTTGTTTTTTGAATCTTTTTATTGATATTTTTTGATTCTTTTTTGGTTTCAGTAAACATTTTGGTGCGATTTGCAAAAGACAACTTTTGTTTTAAGCAACAGTTGTTTTTAGTTTCCTGTAAAACTTCACCATAAATTTTTCTAATTCAAGTTTACCATAAACTATTGTGATCTAACTATTCCTAGAGTTTTCTGAATCCATAATGGCACACAAAATCGCTCTTTGCTTTAACTTGTTAGTGCACAATGCTTATTTTTACCCTGTAGGAAGCATCTTGATCTTCATATTACTGTCATTTCTGGTCCACAAGTTATTCTGATATCAACAAATTTGCTTGGACTTTCAGGAACCACTGGTATAATTGATTATACAAACTATGATGACATGAAATATGCTGTAAGCCATCTTCTCTTTTCTCCTTCCCTTTAGTTGGGTTTCCTTCACCTTGATGCTGTTGACAATATTTGATTTTTCCTTTATACAACTAAGAGGTGCAGCTAATATTATCCTTTCATGTGTATAGATCAAAAAGCTTGATGACTCTGAGTTTCGAAATGCCTTTTCTCGTGCGACAATTCGAGTATGACACAAACAATTTTCAATTTCTTCAATTATCGTGTTGATGCCGTCATTTGCTATTCTCAAAACCTCCACCTTCTGTAGGTTAAAGAATATGACCGCAGTCG</genome_strand>
        <mrna_strand>GAACAATGAGTCGGTCGAGTAGGACACTTTATGTTGGCAATCTTCCTGGTGATGTTCGTGAGCGTGAAGTGGAAGATCTCTTTTACAAG...........................................................................................................................................................................................................................................................................TATGGACCGATTGCACATATTGAGCTGAAAATTCCACCAAGACCCCCTGGTTATGCTTTTGTTGAG......................................................................................................TTTGAAGAGGCTCGTGATGCTGAAGATGCTATTCGTGGTCGTGATGGCTATGATTTTGATGGGCACCGTCTGCGG...............................................................................................GTTGAGCTTGCACATGGCGGGCGTGGTAACTCATCATCAAATGATCGTTATGGTGGTGGCGGTGGCGGCCGTGGTCAGCGTGGTGGAGGAGTGTCAAGACGTTCAGATTATCGAG.....................................................................................TGTTAGTTACAGGATTACCCCATTCAGCATCGTGGCAGGATCTCAAG...................................................................................................................GATCACATGCGCCGTGCTGGGGATGTTTGTTTCTCCCAAGTTTTCCGTGACGGGAGTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACCACTGGTATAATTGATTATACAAACTATGATGACATGAAATATGCT...............................................................................................................................ATCAAAAAGCTTGATGACTCTGAGTTTCGAAATGCCTTTTCTCGTGCGACAATTCGA...................................................................................GTTAAAGAATATGACCGCAGTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E271755" ref_strand="+" ref_description="SGN-E271755 [cLEM-8-C3]">
      <seq>tcccaggaacaatgagtcggtcgagtaggacactttatgttggcaatcttcctggtgatgggcgtgagcgtgaagtggaagatctcttttacaagtatggaccgattgcacatattgagctgaaaattccaccaagaccccctggttatgcttttgttgagtttgaagaggctcgtgatgctgaagatgctattcgtggtcgtgatggctatgattttgatgggcaccgtctgcgggttgagcttgcacatggcgggcgtggtaactcatcatcaaatgatcgttatggtggtggcggtggcggccgtggtcagcgtggtggaggagtgtcaagacgttcagattatcgagtgttagttacaggattaccccattcagcatcgtggcaggatctcaaggatcacatgcgccgtgctggggatgtttgtttctcccaagttttccgtgacgggagtggaaccactggtataattgattatacaaactatgatgacatgaaatatgctatcaaaaagcttgatgactctgagtttcgaaatgccttttctcgtgcgacaattcgagttaaagaatatgaccgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="68454" stop="64633"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68157" g_stop="68063" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68062" i_stop="67796" i_length="267">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67795" g_stop="67730" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="161" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67729" i_stop="67628" i_length="102">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67627" g_stop="67553" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="236" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67552" i_stop="67458" i_length="95">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67457" g_stop="67343" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="351" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67342" i_stop="67258" i_length="85">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67257" g_stop="67211" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="398" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67210" i_stop="67096" i_length="115">
            <donor d_prob="0.611" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67095" g_stop="67038" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="456" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="67037" i_stop="65269" i_length="1769">
            <donor d_prob="0.732" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="65268" g_stop="65219" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="506" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="65218" i_stop="65092" i_length="127">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="65091" g_stop="65035" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="563" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="65034" i_stop="64952" i_length="83">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.791" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="64951" g_stop="64933" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="564" r_stop="582" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E271755" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271755" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68157" e_stop="68063"/>
          <exon e_start="67795" e_stop="67730"/>
          <exon e_start="67627" e_stop="67553"/>
          <exon e_start="67457" e_stop="67343"/>
          <exon e_start="67257" e_stop="67211"/>
          <exon e_start="67095" e_stop="67038"/>
          <exon e_start="65268" e_stop="65219"/>
          <exon e_start="65091" e_stop="65035"/>
          <exon e_start="64951" e_stop="64933"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAGGAACAATGAGTCGGTCGAGTAGGACACTTTATGTTGGCAATCTTCCTGGTGATGTTCGTGAGCGTGAAGTGGAAGATCTCTTTTACAAGGTGCTTATACTCTAGATGGCTCCCTACATTCTTTGATATCATTTCATAATGCTTATAAACAAAAAGAAAAATGATTAGAAGTAAAATTATGTTTTTGAGTGAAATGGGTACAAATAGAGTGGTATGGATATAGGGAATTCATTATCGACAAACTCAAATTAAGGAGTATTTCTTTTGTAAGGCTTGTGCACATGTTTAATTGTTCTGTCACAATTTAACAGATTTTAACTGTTAGAAACTTATAAACAATTTGATGTGTGAGTGCAGTATGGACCGATTGCACATATTGAGCTGAAAATTCCACCAAGACCCCCTGGTTATGCTTTTGTTGAGGTGAGTTTGAGCTGCCTTGGTTCTGATGGATTTCATTAGATCAGCCTGCTATGCGCCTTTTAAAGCTATTCTGACCTTTATATTGGCCAAAAACTATAACAGTTTGAAGAGGCTCGTGATGCTGAAGATGCTATTCGTGGTCGTGATGGCTATGATTTTGATGGGCACCGTCTGCGGGTCGGTCAAACTTATAGTTAGCGTATAGTTTACACAAGGTTACTAGTTTTTGCCTTGTTGGATGTTGAATCTATTACAATTGCTCATACTGGCAGGTTGAGCTTGCACATGGCGGGCGTGGTAACTCATCATCAAATGATCGTTATGGTGGTGGCGGTGGCGGCCGTGGTCAGCGTGGTGGAGGAGTGTCAAGACGTTCAGATTATCGAGGTGTGTCTTATGGGTTATGTGCTTTCTACATTGGAATACATGTTATATCTTTTCTTATGTTCTGATATCTTTTGTTGTATTTCAGTGTTAGTTACAGGATTACCCCATTCAGCATCGTGGCAGGATCTCAAGGTGAGTCGGTGTCTTTGAGTTGTGAATCATAGGGACTTACCAAGAAAGTGATCCTCCTTTCCCTCAAAATTATTCTGTAATTTCTGAGTATTGTTAACTTTTATTTCTTATGTAGGATCACATGCGCCGTGCTGGGGATGTTTGTTTCTCCCAAGTTTTCCGTGACGGGAGTGGTAAGATTTAAACAGCTAATGGCAGATCTACTTTTTCTCTTTGAACTGGTATAATGGTTTAACTGTCAAGCACACGGAACTCCTCCATGTGGAATGGCAACCTACAATGATACACCAAGCAATAAGTCTTTGATGTGAGCTTACAATGGTACTCACTAATTGTACTGATGATTTGGAGAAAGACCTGTATACAAACTGTATATCGAAAGATGGAGAATTCTACTGTAACACACTATTCCTCTTCTTGCTCATCGTGGTTGACCTGTCATAGGAATAGGTTAAGGATACTTTTCTTTATATCATAGTGTAAATTAATGAGTTTATAATCAAGTATTATATTAAGGGTGCAAGTCTGTCATTGTTAATTATTACTGTCATTCTTTTTATATTTAGAGCTTTGGTAATAACTGTGGGTTCATACCTGGGATATCTGATAAATTTGGAAAAATGCATAGGATCTATGACTCATAATTTGGGTTTTCAGTATAAGCTGATAAGTCTTTCTTTGTCTAGAAAAATGTTATATTGAAGGAAAAATAATATAGGAGAGATCATCTCTTCAGAAAATGTAGTGGAAATAATCATCGACATATTGATAACAATATTACTTGATGAAAACAGGATAAGGTCTTGACAAACTGGAGGGGAAAATATGCAGGTGGAGCAAAAAATTGGGAGGAAAGATGGAAAACTAAATATAAAAGAAACACTGAGTAGGAAAGAAGCACAAGTTAGATGTGTTATGGTTCCTCGAGGGTAGGGTGGGGTGGGGAGACCAACGTTGCTGCAAGCTTGAGGTCGGGGTAGGTCAAAAACCTAGAGGTGTTGGGGCATCATTGGTTGGTGGCTGGGTGAGGGCAAGATAAGTTCTGCTCTCAGGAAGAAATGGTGAAAAAGATGAAGAGAGATGTGTATTTTTGTTGTCTTCCCATCTAAGAATGTCTCGCCCTTGCCCATCTATTGTCCTCTTTTGCTCTTCTAATACAATTTGTTAATTTGGATTATGATCCTGTTATTTATCCCATTTTTTTCTGAGGACTATCATCCCTTGAGACAATTTAAAAGCTGGTTATCGACTGTGCTGCCTAATGTTTGGTGGTTGGTTGGATAAATTTGTTTAGACTAATCTGATGCACCTGATGACCCCATTAACTTGTATGATGTTTTGGATTTCTTTCCCCGTTTCTTTTTGAATTTTATTTTGGTACAACTGTTTGAAGTCTTTAACTAGATGCTAACCCAATGTGCCAAAATGTTCCCACGCTCTATGTTGATGACTGCATATGCAATTTTCTCCTCTATGATTCATTTCTACGTTTTCTGATCACGTGCAGAACTTGTCATATTGGAGGGTCCACTTTTGTTTTTTAAGGGAATGAAAATTAAGAGGAAGCAAATGATATTTGATGTAGGCCGAGAAAACTTGTTTTTTGAATCTTTTTATTGATATTTTTTGATTCTTTTTTGGTTTCAGTAAACATTTTGGTGCGATTTGCAAAAGACAACTTTTGTTTTAAGCAACAGTTGTTTTTAGTTTCCTGTAAAACTTCACCATAAATTTTTCTAATTCAAGTTTACCATAAACTATTGTGATCTAACTATTCCTAGAGTTTTCTGAATCCATAATGGCACACAAAATCGCTCTTTGCTTTAACTTGTTAGTGCACAATGCTTATTTTTACCCTGTAGGAAGCATCTTGATCTTCATATTACTGTCATTTCTGGTCCACAAGTTATTCTGATATCAACAAATTTGCTTGGACTTTCAGGAACCACTGGTATAATTGATTATACAAACTATGATGACATGAAATATGCTGTAAGCCATCTTCTCTTTTCTCCTTCCCTTTAGTTGGGTTTCCTTCACCTTGATGCTGTTGACAATATTTGATTTTTCCTTTATACAACTAAGAGGTGCAGCTAATATTATCCTTTCATGTGTATAGATCAAAAAGCTTGATGACTCTGAGTTTCGAAATGCCTTTTCTCGTGCGACAATTCGAGTATGACACAAACAATTTTCAATTTCTTCAATTATCGTGTTGATGCCGTCATTTGCTATTCTCAAAACCTCCACCTTCTGTAGGTTAAAGAATATGACCGCA</genome_strand>
        <mrna_strand>TCCCAGGAACAATGAGTCGGTCGAGTAGGACACTTTATGTTGGCAATCTTCCTGGTGATGGGCGTGAGCGTGAAGTGGAAGATCTCTTTTACAAG...........................................................................................................................................................................................................................................................................TATGGACCGATTGCACATATTGAGCTGAAAATTCCACCAAGACCCCCTGGTTATGCTTTTGTTGAG......................................................................................................TTTGAAGAGGCTCGTGATGCTGAAGATGCTATTCGTGGTCGTGATGGCTATGATTTTGATGGGCACCGTCTGCGG...............................................................................................GTTGAGCTTGCACATGGCGGGCGTGGTAACTCATCATCAAATGATCGTTATGGTGGTGGCGGTGGCGGCCGTGGTCAGCGTGGTGGAGGAGTGTCAAGACGTTCAGATTATCGAG.....................................................................................TGTTAGTTACAGGATTACCCCATTCAGCATCGTGGCAGGATCTCAAG...................................................................................................................GATCACATGCGCCGTGCTGGGGATGTTTGTTTCTCCCAAGTTTTCCGTGACGGGAGTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACCACTGGTATAATTGATTATACAAACTATGATGACATGAAATATGCT...............................................................................................................................ATCAAAAAGCTTGATGACTCTGAGTTTCGAAATGCCTTTTCTCGTGCGACAATTCGA...................................................................................GTTAAAGAATATGACCGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E246019" ref_strand="+" ref_description="SGN-E246019 [cLEF-54-A20]">
      <seq>ggaacaatgagtcggtcgagtaggacactttatgttggcaatcttcctggtgatgttcgtgagcgtgaagtggaagatctcttttacaagtatggaccgattgcacatattgagctgaaaattccaccaagaccccctggttatgcttttgttgagtttgaagaggctcgtgatgctgaagatgctattcgtggtcgtgatggctatgattttgatgggcaccgtctgcgggttgagcttgcacatggcgggcgtggtaactcatcatcaaatgatcgttatggtggtggcggtggcggccgtggtcagcgtggtggaggagtgtcaagacgttcagattatcgagtgttagttacaggattaccccattcagcatcgtggcaggatctcaaggatcacatgcgccgtgctggggatgtttgtttctcccaagttttccgtgacgggagtggaaccactggtataattgattatacaaactatgatgacatgaaatatgctatcaaaaagcttgatgactctgagtttcgaaatgccttttctcgtgcgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="68452" stop="64742"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68152" g_stop="68063" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68062" i_stop="67796" i_length="267">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67795" g_stop="67730" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="156" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67729" i_stop="67628" i_length="102">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67627" g_stop="67553" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="231" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67552" i_stop="67458" i_length="95">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67457" g_stop="67343" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="346" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67342" i_stop="67258" i_length="85">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67257" g_stop="67211" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="393" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67210" i_stop="67096" i_length="115">
            <donor d_prob="0.611" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67095" g_stop="67038" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="451" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="67037" i_stop="65269" i_length="1769">
            <donor d_prob="0.732" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="65268" g_stop="65219" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="501" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="65218" i_stop="65092" i_length="127">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="65091" g_stop="65042" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="551" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E246019" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246019" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68152" e_stop="68063"/>
          <exon e_start="67795" e_stop="67730"/>
          <exon e_start="67627" e_stop="67553"/>
          <exon e_start="67457" e_stop="67343"/>
          <exon e_start="67257" e_stop="67211"/>
          <exon e_start="67095" e_stop="67038"/>
          <exon e_start="65268" e_stop="65219"/>
          <exon e_start="65091" e_stop="65042"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAACAATGAGTCGGTCGAGTAGGACACTTTATGTTGGCAATCTTCCTGGTGATGTTCGTGAGCGTGAAGTGGAAGATCTCTTTTACAAGGTGCTTATACTCTAGATGGCTCCCTACATTCTTTGATATCATTTCATAATGCTTATAAACAAAAAGAAAAATGATTAGAAGTAAAATTATGTTTTTGAGTGAAATGGGTACAAATAGAGTGGTATGGATATAGGGAATTCATTATCGACAAACTCAAATTAAGGAGTATTTCTTTTGTAAGGCTTGTGCACATGTTTAATTGTTCTGTCACAATTTAACAGATTTTAACTGTTAGAAACTTATAAACAATTTGATGTGTGAGTGCAGTATGGACCGATTGCACATATTGAGCTGAAAATTCCACCAAGACCCCCTGGTTATGCTTTTGTTGAGGTGAGTTTGAGCTGCCTTGGTTCTGATGGATTTCATTAGATCAGCCTGCTATGCGCCTTTTAAAGCTATTCTGACCTTTATATTGGCCAAAAACTATAACAGTTTGAAGAGGCTCGTGATGCTGAAGATGCTATTCGTGGTCGTGATGGCTATGATTTTGATGGGCACCGTCTGCGGGTCGGTCAAACTTATAGTTAGCGTATAGTTTACACAAGGTTACTAGTTTTTGCCTTGTTGGATGTTGAATCTATTACAATTGCTCATACTGGCAGGTTGAGCTTGCACATGGCGGGCGTGGTAACTCATCATCAAATGATCGTTATGGTGGTGGCGGTGGCGGCCGTGGTCAGCGTGGTGGAGGAGTGTCAAGACGTTCAGATTATCGAGGTGTGTCTTATGGGTTATGTGCTTTCTACATTGGAATACATGTTATATCTTTTCTTATGTTCTGATATCTTTTGTTGTATTTCAGTGTTAGTTACAGGATTACCCCATTCAGCATCGTGGCAGGATCTCAAGGTGAGTCGGTGTCTTTGAGTTGTGAATCATAGGGACTTACCAAGAAAGTGATCCTCCTTTCCCTCAAAATTATTCTGTAATTTCTGAGTATTGTTAACTTTTATTTCTTATGTAGGATCACATGCGCCGTGCTGGGGATGTTTGTTTCTCCCAAGTTTTCCGTGACGGGAGTGGTAAGATTTAAACAGCTAATGGCAGATCTACTTTTTCTCTTTGAACTGGTATAATGGTTTAACTGTCAAGCACACGGAACTCCTCCATGTGGAATGGCAACCTACAATGATACACCAAGCAATAAGTCTTTGATGTGAGCTTACAATGGTACTCACTAATTGTACTGATGATTTGGAGAAAGACCTGTATACAAACTGTATATCGAAAGATGGAGAATTCTACTGTAACACACTATTCCTCTTCTTGCTCATCGTGGTTGACCTGTCATAGGAATAGGTTAAGGATACTTTTCTTTATATCATAGTGTAAATTAATGAGTTTATAATCAAGTATTATATTAAGGGTGCAAGTCTGTCATTGTTAATTATTACTGTCATTCTTTTTATATTTAGAGCTTTGGTAATAACTGTGGGTTCATACCTGGGATATCTGATAAATTTGGAAAAATGCATAGGATCTATGACTCATAATTTGGGTTTTCAGTATAAGCTGATAAGTCTTTCTTTGTCTAGAAAAATGTTATATTGAAGGAAAAATAATATAGGAGAGATCATCTCTTCAGAAAATGTAGTGGAAATAATCATCGACATATTGATAACAATATTACTTGATGAAAACAGGATAAGGTCTTGACAAACTGGAGGGGAAAATATGCAGGTGGAGCAAAAAATTGGGAGGAAAGATGGAAAACTAAATATAAAAGAAACACTGAGTAGGAAAGAAGCACAAGTTAGATGTGTTATGGTTCCTCGAGGGTAGGGTGGGGTGGGGAGACCAACGTTGCTGCAAGCTTGAGGTCGGGGTAGGTCAAAAACCTAGAGGTGTTGGGGCATCATTGGTTGGTGGCTGGGTGAGGGCAAGATAAGTTCTGCTCTCAGGAAGAAATGGTGAAAAAGATGAAGAGAGATGTGTATTTTTGTTGTCTTCCCATCTAAGAATGTCTCGCCCTTGCCCATCTATTGTCCTCTTTTGCTCTTCTAATACAATTTGTTAATTTGGATTATGATCCTGTTATTTATCCCATTTTTTTCTGAGGACTATCATCCCTTGAGACAATTTAAAAGCTGGTTATCGACTGTGCTGCCTAATGTTTGGTGGTTGGTTGGATAAATTTGTTTAGACTAATCTGATGCACCTGATGACCCCATTAACTTGTATGATGTTTTGGATTTCTTTCCCCGTTTCTTTTTGAATTTTATTTTGGTACAACTGTTTGAAGTCTTTAACTAGATGCTAACCCAATGTGCCAAAATGTTCCCACGCTCTATGTTGATGACTGCATATGCAATTTTCTCCTCTATGATTCATTTCTACGTTTTCTGATCACGTGCAGAACTTGTCATATTGGAGGGTCCACTTTTGTTTTTTAAGGGAATGAAAATTAAGAGGAAGCAAATGATATTTGATGTAGGCCGAGAAAACTTGTTTTTTGAATCTTTTTATTGATATTTTTTGATTCTTTTTTGGTTTCAGTAAACATTTTGGTGCGATTTGCAAAAGACAACTTTTGTTTTAAGCAACAGTTGTTTTTAGTTTCCTGTAAAACTTCACCATAAATTTTTCTAATTCAAGTTTACCATAAACTATTGTGATCTAACTATTCCTAGAGTTTTCTGAATCCATAATGGCACACAAAATCGCTCTTTGCTTTAACTTGTTAGTGCACAATGCTTATTTTTACCCTGTAGGAAGCATCTTGATCTTCATATTACTGTCATTTCTGGTCCACAAGTTATTCTGATATCAACAAATTTGCTTGGACTTTCAGGAACCACTGGTATAATTGATTATACAAACTATGATGACATGAAATATGCTGTAAGCCATCTTCTCTTTTCTCCTTCCCTTTAGTTGGGTTTCCTTCACCTTGATGCTGTTGACAATATTTGATTTTTCCTTTATACAACTAAGAGGTGCAGCTAATATTATCCTTTCATGTGTATAGATCAAAAAGCTTGATGACTCTGAGTTTCGAAATGCCTTTTCTCGTGCGAC</genome_strand>
        <mrna_strand>GGAACAATGAGTCGGTCGAGTAGGACACTTTATGTTGGCAATCTTCCTGGTGATGTTCGTGAGCGTGAAGTGGAAGATCTCTTTTACAAG...........................................................................................................................................................................................................................................................................TATGGACCGATTGCACATATTGAGCTGAAAATTCCACCAAGACCCCCTGGTTATGCTTTTGTTGAG......................................................................................................TTTGAAGAGGCTCGTGATGCTGAAGATGCTATTCGTGGTCGTGATGGCTATGATTTTGATGGGCACCGTCTGCGG...............................................................................................GTTGAGCTTGCACATGGCGGGCGTGGTAACTCATCATCAAATGATCGTTATGGTGGTGGCGGTGGCGGCCGTGGTCAGCGTGGTGGAGGAGTGTCAAGACGTTCAGATTATCGAG.....................................................................................TGTTAGTTACAGGATTACCCCATTCAGCATCGTGGCAGGATCTCAAG...................................................................................................................GATCACATGCGCCGTGCTGGGGATGTTTGTTTCTCCCAAGTTTTCCGTGACGGGAGTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACCACTGGTATAATTGATTATACAAACTATGATGACATGAAATATGCT...............................................................................................................................ATCAAAAAGCTTGATGACTCTGAGTTTCGAAATGCCTTTTCTCGTGCGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E315505" ref_strand="+" ref_description="SGN-E315505 [cTOA-22-L4]">
      <seq>tcgatcttcccaggaacaatgagtcggtcgagtaggacactttatgttggcaatcttcctggtgatgttcgtgagcgtgaagtggaagatctcttttacaagtatggaccgattgcacatattgagctgaaaattccaccaagaccccctggttatgcttttgttgagtttgaagaggctcgtgatgctgaagatgctattcgtggtcgtgatggctatgattttgatgggcaccgtctgcgggttgagcttgcacatggcgggcgtggtaactcatcatcaaatgatcgttatggtggtggcggtggcggccgtggtcancgtggtggaggagtgtcaagacgttcagattatcgagtgttagttacaggattaccccattcagcatcgtggcaggatctcaaggatcacatgcgccgtgctggggatgtttgtttctcccaagttttccgtgacgggagtggaaccactggtataattgattatacaaactatgatgacatgaaatatgctatcaaaaagcttgatgactctgagtttcgaaatgccttttctcgtgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="68459" stop="64744"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68151" g_stop="68063" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="102" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68062" i_stop="67796" i_length="267">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67795" g_stop="67730" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="168" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67729" i_stop="67628" i_length="102">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67627" g_stop="67553" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="243" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67552" i_stop="67458" i_length="95">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67457" g_stop="67343" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="358" r_length="115" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67342" i_stop="67258" i_length="85">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67257" g_stop="67211" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="405" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67210" i_stop="67096" i_length="115">
            <donor d_prob="0.611" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67095" g_stop="67038" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="463" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="67037" i_stop="65269" i_length="1769">
            <donor d_prob="0.732" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="65268" g_stop="65219" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="513" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="65218" i_stop="65092" i_length="127">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="65091" g_stop="65044" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="561" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E315505" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315505" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68151" e_stop="68063"/>
          <exon e_start="67795" e_stop="67730"/>
          <exon e_start="67627" e_stop="67553"/>
          <exon e_start="67457" e_stop="67343"/>
          <exon e_start="67257" e_stop="67211"/>
          <exon e_start="67095" e_stop="67038"/>
          <exon e_start="65268" e_stop="65219"/>
          <exon e_start="65091" e_stop="65044"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACAATGAGTCGGTCGAGTAGGACACTTTATGTTGGCAATCTTCCTGGTGATGTTCGTGAGCGTGAAGTGGAAGATCTCTTTTACAAGGTGCTTATACTCTAGATGGCTCCCTACATTCTTTGATATCATTTCATAATGCTTATAAACAAAAAGAAAAATGATTAGAAGTAAAATTATGTTTTTGAGTGAAATGGGTACAAATAGAGTGGTATGGATATAGGGAATTCATTATCGACAAACTCAAATTAAGGAGTATTTCTTTTGTAAGGCTTGTGCACATGTTTAATTGTTCTGTCACAATTTAACAGATTTTAACTGTTAGAAACTTATAAACAATTTGATGTGTGAGTGCAGTATGGACCGATTGCACATATTGAGCTGAAAATTCCACCAAGACCCCCTGGTTATGCTTTTGTTGAGGTGAGTTTGAGCTGCCTTGGTTCTGATGGATTTCATTAGATCAGCCTGCTATGCGCCTTTTAAAGCTATTCTGACCTTTATATTGGCCAAAAACTATAACAGTTTGAAGAGGCTCGTGATGCTGAAGATGCTATTCGTGGTCGTGATGGCTATGATTTTGATGGGCACCGTCTGCGGGTCGGTCAAACTTATAGTTAGCGTATAGTTTACACAAGGTTACTAGTTTTTGCCTTGTTGGATGTTGAATCTATTACAATTGCTCATACTGGCAGGTTGAGCTTGCACATGGCGGGCGTGGTAACTCATCATCAAATGATCGTTATGGTGGTGGCGGTGGCGGCCGTGGTCAGCGTGGTGGAGGAGTGTCAAGACGTTCAGATTATCGAGGTGTGTCTTATGGGTTATGTGCTTTCTACATTGGAATACATGTTATATCTTTTCTTATGTTCTGATATCTTTTGTTGTATTTCAGTGTTAGTTACAGGATTACCCCATTCAGCATCGTGGCAGGATCTCAAGGTGAGTCGGTGTCTTTGAGTTGTGAATCATAGGGACTTACCAAGAAAGTGATCCTCCTTTCCCTCAAAATTATTCTGTAATTTCTGAGTATTGTTAACTTTTATTTCTTATGTAGGATCACATGCGCCGTGCTGGGGATGTTTGTTTCTCCCAAGTTTTCCGTGACGGGAGTGGTAAGATTTAAACAGCTAATGGCAGATCTACTTTTTCTCTTTGAACTGGTATAATGGTTTAACTGTCAAGCACACGGAACTCCTCCATGTGGAATGGCAACCTACAATGATACACCAAGCAATAAGTCTTTGATGTGAGCTTACAATGGTACTCACTAATTGTACTGATGATTTGGAGAAAGACCTGTATACAAACTGTATATCGAAAGATGGAGAATTCTACTGTAACACACTATTCCTCTTCTTGCTCATCGTGGTTGACCTGTCATAGGAATAGGTTAAGGATACTTTTCTTTATATCATAGTGTAAATTAATGAGTTTATAATCAAGTATTATATTAAGGGTGCAAGTCTGTCATTGTTAATTATTACTGTCATTCTTTTTATATTTAGAGCTTTGGTAATAACTGTGGGTTCATACCTGGGATATCTGATAAATTTGGAAAAATGCATAGGATCTATGACTCATAATTTGGGTTTTCAGTATAAGCTGATAAGTCTTTCTTTGTCTAGAAAAATGTTATATTGAAGGAAAAATAATATAGGAGAGATCATCTCTTCAGAAAATGTAGTGGAAATAATCATCGACATATTGATAACAATATTACTTGATGAAAACAGGATAAGGTCTTGACAAACTGGAGGGGAAAATATGCAGGTGGAGCAAAAAATTGGGAGGAAAGATGGAAAACTAAATATAAAAGAAACACTGAGTAGGAAAGAAGCACAAGTTAGATGTGTTATGGTTCCTCGAGGGTAGGGTGGGGTGGGGAGACCAACGTTGCTGCAAGCTTGAGGTCGGGGTAGGTCAAAAACCTAGAGGTGTTGGGGCATCATTGGTTGGTGGCTGGGTGAGGGCAAGATAAGTTCTGCTCTCAGGAAGAAATGGTGAAAAAGATGAAGAGAGATGTGTATTTTTGTTGTCTTCCCATCTAAGAATGTCTCGCCCTTGCCCATCTATTGTCCTCTTTTGCTCTTCTAATACAATTTGTTAATTTGGATTATGATCCTGTTATTTATCCCATTTTTTTCTGAGGACTATCATCCCTTGAGACAATTTAAAAGCTGGTTATCGACTGTGCTGCCTAATGTTTGGTGGTTGGTTGGATAAATTTGTTTAGACTAATCTGATGCACCTGATGACCCCATTAACTTGTATGATGTTTTGGATTTCTTTCCCCGTTTCTTTTTGAATTTTATTTTGGTACAACTGTTTGAAGTCTTTAACTAGATGCTAACCCAATGTGCCAAAATGTTCCCACGCTCTATGTTGATGACTGCATATGCAATTTTCTCCTCTATGATTCATTTCTACGTTTTCTGATCACGTGCAGAACTTGTCATATTGGAGGGTCCACTTTTGTTTTTTAAGGGAATGAAAATTAAGAGGAAGCAAATGATATTTGATGTAGGCCGAGAAAACTTGTTTTTTGAATCTTTTTATTGATATTTTTTGATTCTTTTTTGGTTTCAGTAAACATTTTGGTGCGATTTGCAAAAGACAACTTTTGTTTTAAGCAACAGTTGTTTTTAGTTTCCTGTAAAACTTCACCATAAATTTTTCTAATTCAAGTTTACCATAAACTATTGTGATCTAACTATTCCTAGAGTTTTCTGAATCCATAATGGCACACAAAATCGCTCTTTGCTTTAACTTGTTAGTGCACAATGCTTATTTTTACCCTGTAGGAAGCATCTTGATCTTCATATTACTGTCATTTCTGGTCCACAAGTTATTCTGATATCAACAAATTTGCTTGGACTTTCAGGAACCACTGGTATAATTGATTATACAAACTATGATGACATGAAATATGCTGTAAGCCATCTTCTCTTTTCTCCTTCCCTTTAGTTGGGTTTCCTTCACCTTGATGCTGTTGACAATATTTGATTTTTCCTTTATACAACTAAGAGGTGCAGCTAATATTATCCTTTCATGTGTATAGATCAAAAAGCTTGATGACTCTGAGTTTCGAAATGCCTTTTCTCGTGCG</genome_strand>
        <mrna_strand>GAACAATGAGTCGGTCGAGTAGGACACTTTATGTTGGCAATCTTCCTGGTGATGTTCGTGAGCGTGAAGTGGAAGATCTCTTTTACAAG...........................................................................................................................................................................................................................................................................TATGGACCGATTGCACATATTGAGCTGAAAATTCCACCAAGACCCCCTGGTTATGCTTTTGTTGAG......................................................................................................TTTGAAGAGGCTCGTGATGCTGAAGATGCTATTCGTGGTCGTGATGGCTATGATTTTGATGGGCACCGTCTGCGG...............................................................................................GTTGAGCTTGCACATGGCGGGCGTGGTAACTCATCATCAAATGATCGTTATGGTGGTGGCGGTGGCGGCCGTGGTCANCGTGGTGGAGGAGTGTCAAGACGTTCAGATTATCGAG.....................................................................................TGTTAGTTACAGGATTACCCCATTCAGCATCGTGGCAGGATCTCAAG...................................................................................................................GATCACATGCGCCGTGCTGGGGATGTTTGTTTCTCCCAAGTTTTCCGTGACGGGAGTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACCACTGGTATAATTGATTATACAAACTATGATGACATGAAATATGCT...............................................................................................................................ATCAAAAAGCTTGATGACTCTGAGTTTCGAAATGCCTTTTCTCGTGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E270766" ref_strand="+" ref_description="SGN-E270766 [cLEM-6-L8]">
      <seq>gatcttcccaggaacaatgagtcggtcgagtaggacactttatgttggcaatcttcctggtgatgttcgtgagcgtgaagtggaagatctcttttacaagtatggaccgattgcacatattgagctgaaaattccaccaagaccccctggttatgcttttgttgagtttgaagaggctcgtgatgctgaagatgctattcgtggtcgtgatggctatgattttgatgggcaccgtctgcgggttgagcttgcacatggcgggcgtggtaactcatcatcaaatgatcgttatggtggtggcggtggcggccgtggtcagcgtggtggaggagtgtcaagacgttcagattatcgagtgttagttacaggattaccccattcagcatcgtggcaggatctcaaggatcacatgcgccgtgctggggatgtttgtttctcccaagttttccgtgacgggagtggaaccactggtataattgattatacaaactatgatgacatgaaatatgctatcaaaaagcttgatgactctgagtttcgaaatgccttttctcgtgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="68459" stop="64744"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68151" g_stop="68063" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="100" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68062" i_stop="67796" i_length="267">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67795" g_stop="67730" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="166" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67729" i_stop="67628" i_length="102">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67627" g_stop="67553" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="241" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67552" i_stop="67458" i_length="95">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67457" g_stop="67343" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="356" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67342" i_stop="67258" i_length="85">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67257" g_stop="67211" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="403" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67210" i_stop="67096" i_length="115">
            <donor d_prob="0.611" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67095" g_stop="67038" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="461" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="67037" i_stop="65269" i_length="1769">
            <donor d_prob="0.732" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="65268" g_stop="65219" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="511" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="65218" i_stop="65092" i_length="127">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="65091" g_stop="65044" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="559" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E270766" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270766" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68151" e_stop="68063"/>
          <exon e_start="67795" e_stop="67730"/>
          <exon e_start="67627" e_stop="67553"/>
          <exon e_start="67457" e_stop="67343"/>
          <exon e_start="67257" e_stop="67211"/>
          <exon e_start="67095" e_stop="67038"/>
          <exon e_start="65268" e_stop="65219"/>
          <exon e_start="65091" e_stop="65044"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACAATGAGTCGGTCGAGTAGGACACTTTATGTTGGCAATCTTCCTGGTGATGTTCGTGAGCGTGAAGTGGAAGATCTCTTTTACAAGGTGCTTATACTCTAGATGGCTCCCTACATTCTTTGATATCATTTCATAATGCTTATAAACAAAAAGAAAAATGATTAGAAGTAAAATTATGTTTTTGAGTGAAATGGGTACAAATAGAGTGGTATGGATATAGGGAATTCATTATCGACAAACTCAAATTAAGGAGTATTTCTTTTGTAAGGCTTGTGCACATGTTTAATTGTTCTGTCACAATTTAACAGATTTTAACTGTTAGAAACTTATAAACAATTTGATGTGTGAGTGCAGTATGGACCGATTGCACATATTGAGCTGAAAATTCCACCAAGACCCCCTGGTTATGCTTTTGTTGAGGTGAGTTTGAGCTGCCTTGGTTCTGATGGATTTCATTAGATCAGCCTGCTATGCGCCTTTTAAAGCTATTCTGACCTTTATATTGGCCAAAAACTATAACAGTTTGAAGAGGCTCGTGATGCTGAAGATGCTATTCGTGGTCGTGATGGCTATGATTTTGATGGGCACCGTCTGCGGGTCGGTCAAACTTATAGTTAGCGTATAGTTTACACAAGGTTACTAGTTTTTGCCTTGTTGGATGTTGAATCTATTACAATTGCTCATACTGGCAGGTTGAGCTTGCACATGGCGGGCGTGGTAACTCATCATCAAATGATCGTTATGGTGGTGGCGGTGGCGGCCGTGGTCAGCGTGGTGGAGGAGTGTCAAGACGTTCAGATTATCGAGGTGTGTCTTATGGGTTATGTGCTTTCTACATTGGAATACATGTTATATCTTTTCTTATGTTCTGATATCTTTTGTTGTATTTCAGTGTTAGTTACAGGATTACCCCATTCAGCATCGTGGCAGGATCTCAAGGTGAGTCGGTGTCTTTGAGTTGTGAATCATAGGGACTTACCAAGAAAGTGATCCTCCTTTCCCTCAAAATTATTCTGTAATTTCTGAGTATTGTTAACTTTTATTTCTTATGTAGGATCACATGCGCCGTGCTGGGGATGTTTGTTTCTCCCAAGTTTTCCGTGACGGGAGTGGTAAGATTTAAACAGCTAATGGCAGATCTACTTTTTCTCTTTGAACTGGTATAATGGTTTAACTGTCAAGCACACGGAACTCCTCCATGTGGAATGGCAACCTACAATGATACACCAAGCAATAAGTCTTTGATGTGAGCTTACAATGGTACTCACTAATTGTACTGATGATTTGGAGAAAGACCTGTATACAAACTGTATATCGAAAGATGGAGAATTCTACTGTAACACACTATTCCTCTTCTTGCTCATCGTGGTTGACCTGTCATAGGAATAGGTTAAGGATACTTTTCTTTATATCATAGTGTAAATTAATGAGTTTATAATCAAGTATTATATTAAGGGTGCAAGTCTGTCATTGTTAATTATTACTGTCATTCTTTTTATATTTAGAGCTTTGGTAATAACTGTGGGTTCATACCTGGGATATCTGATAAATTTGGAAAAATGCATAGGATCTATGACTCATAATTTGGGTTTTCAGTATAAGCTGATAAGTCTTTCTTTGTCTAGAAAAATGTTATATTGAAGGAAAAATAATATAGGAGAGATCATCTCTTCAGAAAATGTAGTGGAAATAATCATCGACATATTGATAACAATATTACTTGATGAAAACAGGATAAGGTCTTGACAAACTGGAGGGGAAAATATGCAGGTGGAGCAAAAAATTGGGAGGAAAGATGGAAAACTAAATATAAAAGAAACACTGAGTAGGAAAGAAGCACAAGTTAGATGTGTTATGGTTCCTCGAGGGTAGGGTGGGGTGGGGAGACCAACGTTGCTGCAAGCTTGAGGTCGGGGTAGGTCAAAAACCTAGAGGTGTTGGGGCATCATTGGTTGGTGGCTGGGTGAGGGCAAGATAAGTTCTGCTCTCAGGAAGAAATGGTGAAAAAGATGAAGAGAGATGTGTATTTTTGTTGTCTTCCCATCTAAGAATGTCTCGCCCTTGCCCATCTATTGTCCTCTTTTGCTCTTCTAATACAATTTGTTAATTTGGATTATGATCCTGTTATTTATCCCATTTTTTTCTGAGGACTATCATCCCTTGAGACAATTTAAAAGCTGGTTATCGACTGTGCTGCCTAATGTTTGGTGGTTGGTTGGATAAATTTGTTTAGACTAATCTGATGCACCTGATGACCCCATTAACTTGTATGATGTTTTGGATTTCTTTCCCCGTTTCTTTTTGAATTTTATTTTGGTACAACTGTTTGAAGTCTTTAACTAGATGCTAACCCAATGTGCCAAAATGTTCCCACGCTCTATGTTGATGACTGCATATGCAATTTTCTCCTCTATGATTCATTTCTACGTTTTCTGATCACGTGCAGAACTTGTCATATTGGAGGGTCCACTTTTGTTTTTTAAGGGAATGAAAATTAAGAGGAAGCAAATGATATTTGATGTAGGCCGAGAAAACTTGTTTTTTGAATCTTTTTATTGATATTTTTTGATTCTTTTTTGGTTTCAGTAAACATTTTGGTGCGATTTGCAAAAGACAACTTTTGTTTTAAGCAACAGTTGTTTTTAGTTTCCTGTAAAACTTCACCATAAATTTTTCTAATTCAAGTTTACCATAAACTATTGTGATCTAACTATTCCTAGAGTTTTCTGAATCCATAATGGCACACAAAATCGCTCTTTGCTTTAACTTGTTAGTGCACAATGCTTATTTTTACCCTGTAGGAAGCATCTTGATCTTCATATTACTGTCATTTCTGGTCCACAAGTTATTCTGATATCAACAAATTTGCTTGGACTTTCAGGAACCACTGGTATAATTGATTATACAAACTATGATGACATGAAATATGCTGTAAGCCATCTTCTCTTTTCTCCTTCCCTTTAGTTGGGTTTCCTTCACCTTGATGCTGTTGACAATATTTGATTTTTCCTTTATACAACTAAGAGGTGCAGCTAATATTATCCTTTCATGTGTATAGATCAAAAAGCTTGATGACTCTGAGTTTCGAAATGCCTTTTCTCGTGCG</genome_strand>
        <mrna_strand>GAACAATGAGTCGGTCGAGTAGGACACTTTATGTTGGCAATCTTCCTGGTGATGTTCGTGAGCGTGAAGTGGAAGATCTCTTTTACAAG...........................................................................................................................................................................................................................................................................TATGGACCGATTGCACATATTGAGCTGAAAATTCCACCAAGACCCCCTGGTTATGCTTTTGTTGAG......................................................................................................TTTGAAGAGGCTCGTGATGCTGAAGATGCTATTCGTGGTCGTGATGGCTATGATTTTGATGGGCACCGTCTGCGG...............................................................................................GTTGAGCTTGCACATGGCGGGCGTGGTAACTCATCATCAAATGATCGTTATGGTGGTGGCGGTGGCGGCCGTGGTCAGCGTGGTGGAGGAGTGTCAAGACGTTCAGATTATCGAG.....................................................................................TGTTAGTTACAGGATTACCCCATTCAGCATCGTGGCAGGATCTCAAG...................................................................................................................GATCACATGCGCCGTGCTGGGGATGTTTGTTTCTCCCAAGTTTTCCGTGACGGGAGTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACCACTGGTATAATTGATTATACAAACTATGATGACATGAAATATGCT...............................................................................................................................ATCAAAAAGCTTGATGACTCTGAGTTTCGAAATGCCTTTTCTCGTGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E273178" ref_strand="+" ref_description="SGN-E273178 [cLEM-24-H24]">
      <seq>gaggcttcccaggaaccaatgagtcggtcgagtaggacacctttatgttggcaatcttcctggtgatgttcgtgagccgtgaagtggaagatctcttttacaagtatggaccgattgcacatattgagctgaaaattccaccaagaccccctggttatgcttttgttgagtttgaagaggctcgtgatgctgaagatgctattcgtggtcgtgatggctatgattttgatgggcaccgtctgcgggttgagcttgcacatggcgggcgtggtaactcatcatcaaatgatcgttatggtggtggcggtggcggccgtggtcagcgtggtggaggagtgtcaagacgttcagattatcgagtgttagttacaggattaccccattcagcatcgtggcaggatctcaaggatcacatgcgccgtgctggggatgtttgtttctcccaagttttccgtgacgggagtggaaccactggtataattgattatacaaactatgatgacatgaaatatgctatcaaaaagcttgatgactctgagtttcgaaatgccttttctcgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="68460" stop="64746"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68151" g_stop="68063" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="104" r_length="91" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68062" i_stop="67796" i_length="267">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67795" g_stop="67730" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="170" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67729" i_stop="67628" i_length="102">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67627" g_stop="67553" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="245" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67552" i_stop="67458" i_length="95">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67457" g_stop="67343" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="360" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67342" i_stop="67258" i_length="85">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67257" g_stop="67211" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="407" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67210" i_stop="67096" i_length="115">
            <donor d_prob="0.611" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67095" g_stop="67038" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="465" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="67037" i_stop="65269" i_length="1769">
            <donor d_prob="0.732" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="65268" g_stop="65219" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="515" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="65218" i_stop="65092" i_length="127">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="65091" g_stop="65047" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="560" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E273178" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273178" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68151" e_stop="68063"/>
          <exon e_start="67795" e_stop="67730"/>
          <exon e_start="67627" e_stop="67553"/>
          <exon e_start="67457" e_stop="67343"/>
          <exon e_start="67257" e_stop="67211"/>
          <exon e_start="67095" e_stop="67038"/>
          <exon e_start="65268" e_stop="65219"/>
          <exon e_start="65091" e_stop="65047"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACAATGAGTCGGTCGAGTAGGACA-CTTTATGTTGGCAATCTTCCTGGTGATGTTCGTGAG-CGTGAAGTGGAAGATCTCTTTTACAAGGTGCTTATACTCTAGATGGCTCCCTACATTCTTTGATATCATTTCATAATGCTTATAAACAAAAAGAAAAATGATTAGAAGTAAAATTATGTTTTTGAGTGAAATGGGTACAAATAGAGTGGTATGGATATAGGGAATTCATTATCGACAAACTCAAATTAAGGAGTATTTCTTTTGTAAGGCTTGTGCACATGTTTAATTGTTCTGTCACAATTTAACAGATTTTAACTGTTAGAAACTTATAAACAATTTGATGTGTGAGTGCAGTATGGACCGATTGCACATATTGAGCTGAAAATTCCACCAAGACCCCCTGGTTATGCTTTTGTTGAGGTGAGTTTGAGCTGCCTTGGTTCTGATGGATTTCATTAGATCAGCCTGCTATGCGCCTTTTAAAGCTATTCTGACCTTTATATTGGCCAAAAACTATAACAGTTTGAAGAGGCTCGTGATGCTGAAGATGCTATTCGTGGTCGTGATGGCTATGATTTTGATGGGCACCGTCTGCGGGTCGGTCAAACTTATAGTTAGCGTATAGTTTACACAAGGTTACTAGTTTTTGCCTTGTTGGATGTTGAATCTATTACAATTGCTCATACTGGCAGGTTGAGCTTGCACATGGCGGGCGTGGTAACTCATCATCAAATGATCGTTATGGTGGTGGCGGTGGCGGCCGTGGTCAGCGTGGTGGAGGAGTGTCAAGACGTTCAGATTATCGAGGTGTGTCTTATGGGTTATGTGCTTTCTACATTGGAATACATGTTATATCTTTTCTTATGTTCTGATATCTTTTGTTGTATTTCAGTGTTAGTTACAGGATTACCCCATTCAGCATCGTGGCAGGATCTCAAGGTGAGTCGGTGTCTTTGAGTTGTGAATCATAGGGACTTACCAAGAAAGTGATCCTCCTTTCCCTCAAAATTATTCTGTAATTTCTGAGTATTGTTAACTTTTATTTCTTATGTAGGATCACATGCGCCGTGCTGGGGATGTTTGTTTCTCCCAAGTTTTCCGTGACGGGAGTGGTAAGATTTAAACAGCTAATGGCAGATCTACTTTTTCTCTTTGAACTGGTATAATGGTTTAACTGTCAAGCACACGGAACTCCTCCATGTGGAATGGCAACCTACAATGATACACCAAGCAATAAGTCTTTGATGTGAGCTTACAATGGTACTCACTAATTGTACTGATGATTTGGAGAAAGACCTGTATACAAACTGTATATCGAAAGATGGAGAATTCTACTGTAACACACTATTCCTCTTCTTGCTCATCGTGGTTGACCTGTCATAGGAATAGGTTAAGGATACTTTTCTTTATATCATAGTGTAAATTAATGAGTTTATAATCAAGTATTATATTAAGGGTGCAAGTCTGTCATTGTTAATTATTACTGTCATTCTTTTTATATTTAGAGCTTTGGTAATAACTGTGGGTTCATACCTGGGATATCTGATAAATTTGGAAAAATGCATAGGATCTATGACTCATAATTTGGGTTTTCAGTATAAGCTGATAAGTCTTTCTTTGTCTAGAAAAATGTTATATTGAAGGAAAAATAATATAGGAGAGATCATCTCTTCAGAAAATGTAGTGGAAATAATCATCGACATATTGATAACAATATTACTTGATGAAAACAGGATAAGGTCTTGACAAACTGGAGGGGAAAATATGCAGGTGGAGCAAAAAATTGGGAGGAAAGATGGAAAACTAAATATAAAAGAAACACTGAGTAGGAAAGAAGCACAAGTTAGATGTGTTATGGTTCCTCGAGGGTAGGGTGGGGTGGGGAGACCAACGTTGCTGCAAGCTTGAGGTCGGGGTAGGTCAAAAACCTAGAGGTGTTGGGGCATCATTGGTTGGTGGCTGGGTGAGGGCAAGATAAGTTCTGCTCTCAGGAAGAAATGGTGAAAAAGATGAAGAGAGATGTGTATTTTTGTTGTCTTCCCATCTAAGAATGTCTCGCCCTTGCCCATCTATTGTCCTCTTTTGCTCTTCTAATACAATTTGTTAATTTGGATTATGATCCTGTTATTTATCCCATTTTTTTCTGAGGACTATCATCCCTTGAGACAATTTAAAAGCTGGTTATCGACTGTGCTGCCTAATGTTTGGTGGTTGGTTGGATAAATTTGTTTAGACTAATCTGATGCACCTGATGACCCCATTAACTTGTATGATGTTTTGGATTTCTTTCCCCGTTTCTTTTTGAATTTTATTTTGGTACAACTGTTTGAAGTCTTTAACTAGATGCTAACCCAATGTGCCAAAATGTTCCCACGCTCTATGTTGATGACTGCATATGCAATTTTCTCCTCTATGATTCATTTCTACGTTTTCTGATCACGTGCAGAACTTGTCATATTGGAGGGTCCACTTTTGTTTTTTAAGGGAATGAAAATTAAGAGGAAGCAAATGATATTTGATGTAGGCCGAGAAAACTTGTTTTTTGAATCTTTTTATTGATATTTTTTGATTCTTTTTTGGTTTCAGTAAACATTTTGGTGCGATTTGCAAAAGACAACTTTTGTTTTAAGCAACAGTTGTTTTTAGTTTCCTGTAAAACTTCACCATAAATTTTTCTAATTCAAGTTTACCATAAACTATTGTGATCTAACTATTCCTAGAGTTTTCTGAATCCATAATGGCACACAAAATCGCTCTTTGCTTTAACTTGTTAGTGCACAATGCTTATTTTTACCCTGTAGGAAGCATCTTGATCTTCATATTACTGTCATTTCTGGTCCACAAGTTATTCTGATATCAACAAATTTGCTTGGACTTTCAGGAACCACTGGTATAATTGATTATACAAACTATGATGACATGAAATATGCTGTAAGCCATCTTCTCTTTTCTCCTTCCCTTTAGTTGGGTTTCCTTCACCTTGATGCTGTTGACAATATTTGATTTTTCCTTTATACAACTAAGAGGTGCAGCTAATATTATCCTTTCATGTGTATAGATCAAAAAGCTTGATGACTCTGAGTTTCGAAATGCCTTTTCTCGT</genome_strand>
        <mrna_strand>AACCAATGAGTCGGTCGAGTAGGACACCTTTATGTTGGCAATCTTCCTGGTGATGTTCGTGAGCCGTGAAGTGGAAGATCTCTTTTACAAG...........................................................................................................................................................................................................................................................................TATGGACCGATTGCACATATTGAGCTGAAAATTCCACCAAGACCCCCTGGTTATGCTTTTGTTGAG......................................................................................................TTTGAAGAGGCTCGTGATGCTGAAGATGCTATTCGTGGTCGTGATGGCTATGATTTTGATGGGCACCGTCTGCGG...............................................................................................GTTGAGCTTGCACATGGCGGGCGTGGTAACTCATCATCAAATGATCGTTATGGTGGTGGCGGTGGCGGCCGTGGTCAGCGTGGTGGAGGAGTGTCAAGACGTTCAGATTATCGAG.....................................................................................TGTTAGTTACAGGATTACCCCATTCAGCATCGTGGCAGGATCTCAAG...................................................................................................................GATCACATGCGCCGTGCTGGGGATGTTTGTTTCTCCCAAGTTTTCCGTGACGGGAGTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACCACTGGTATAATTGATTATACAAACTATGATGACATGAAATATGCT...............................................................................................................................ATCAAAAAGCTTGATGACTCTGAGTTTCGAAATGCCTTTTCTCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E303833" ref_strand="+" ref_description="SGN-E303833 [cLEX-4-L12]">
      <seq>tcgatcttcccaggaacaatgagtcggtcgagtaggacactttatgttggcaatcttcctggtgatgttcgtgagcgtgaagtggaagatctcttttacaagtatggaccgattgcacatattgagctgaaaattccaccaagaccccctggttatgcttttgttgagtttgaagaggctcgtgatgctgaagatgctattcgtggtcgtgatggctatgattttgatgggcaccgtctgcgggttgagcttgcacatggcgggcgtggtaactcatcatcaaatgatcgttatggtggtggcggtggcggccgtggtcagcgtggtggaggagtgtcaagacgttcagattatcgagtgttagttacaggattaccccattcagcatcgtggcaggatctcaaggatcacatgcgccgtgctggggatgtttgtttctcccaagttttccgtgacgggagtggaaccactggtataattgattatacaaactatgatgacatgaaatatgctatcaaaaagcttgatgactctgagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="68459" stop="64766"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68151" g_stop="68063" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="102" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68062" i_stop="67796" i_length="267">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67795" g_stop="67730" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="168" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67729" i_stop="67628" i_length="102">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67627" g_stop="67553" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="243" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67552" i_stop="67458" i_length="95">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67457" g_stop="67343" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="358" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67342" i_stop="67258" i_length="85">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67257" g_stop="67211" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="405" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67210" i_stop="67096" i_length="115">
            <donor d_prob="0.611" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67095" g_stop="67038" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="463" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="67037" i_stop="65269" i_length="1769">
            <donor d_prob="0.732" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="65268" g_stop="65219" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="513" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="65218" i_stop="65092" i_length="127">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="65091" g_stop="65066" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="539" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E303833" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303833" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68151" e_stop="68063"/>
          <exon e_start="67795" e_stop="67730"/>
          <exon e_start="67627" e_stop="67553"/>
          <exon e_start="67457" e_stop="67343"/>
          <exon e_start="67257" e_stop="67211"/>
          <exon e_start="67095" e_stop="67038"/>
          <exon e_start="65268" e_stop="65219"/>
          <exon e_start="65091" e_stop="65066"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACAATGAGTCGGTCGAGTAGGACACTTTATGTTGGCAATCTTCCTGGTGATGTTCGTGAGCGTGAAGTGGAAGATCTCTTTTACAAGGTGCTTATACTCTAGATGGCTCCCTACATTCTTTGATATCATTTCATAATGCTTATAAACAAAAAGAAAAATGATTAGAAGTAAAATTATGTTTTTGAGTGAAATGGGTACAAATAGAGTGGTATGGATATAGGGAATTCATTATCGACAAACTCAAATTAAGGAGTATTTCTTTTGTAAGGCTTGTGCACATGTTTAATTGTTCTGTCACAATTTAACAGATTTTAACTGTTAGAAACTTATAAACAATTTGATGTGTGAGTGCAGTATGGACCGATTGCACATATTGAGCTGAAAATTCCACCAAGACCCCCTGGTTATGCTTTTGTTGAGGTGAGTTTGAGCTGCCTTGGTTCTGATGGATTTCATTAGATCAGCCTGCTATGCGCCTTTTAAAGCTATTCTGACCTTTATATTGGCCAAAAACTATAACAGTTTGAAGAGGCTCGTGATGCTGAAGATGCTATTCGTGGTCGTGATGGCTATGATTTTGATGGGCACCGTCTGCGGGTCGGTCAAACTTATAGTTAGCGTATAGTTTACACAAGGTTACTAGTTTTTGCCTTGTTGGATGTTGAATCTATTACAATTGCTCATACTGGCAGGTTGAGCTTGCACATGGCGGGCGTGGTAACTCATCATCAAATGATCGTTATGGTGGTGGCGGTGGCGGCCGTGGTCAGCGTGGTGGAGGAGTGTCAAGACGTTCAGATTATCGAGGTGTGTCTTATGGGTTATGTGCTTTCTACATTGGAATACATGTTATATCTTTTCTTATGTTCTGATATCTTTTGTTGTATTTCAGTGTTAGTTACAGGATTACCCCATTCAGCATCGTGGCAGGATCTCAAGGTGAGTCGGTGTCTTTGAGTTGTGAATCATAGGGACTTACCAAGAAAGTGATCCTCCTTTCCCTCAAAATTATTCTGTAATTTCTGAGTATTGTTAACTTTTATTTCTTATGTAGGATCACATGCGCCGTGCTGGGGATGTTTGTTTCTCCCAAGTTTTCCGTGACGGGAGTGGTAAGATTTAAACAGCTAATGGCAGATCTACTTTTTCTCTTTGAACTGGTATAATGGTTTAACTGTCAAGCACACGGAACTCCTCCATGTGGAATGGCAACCTACAATGATACACCAAGCAATAAGTCTTTGATGTGAGCTTACAATGGTACTCACTAATTGTACTGATGATTTGGAGAAAGACCTGTATACAAACTGTATATCGAAAGATGGAGAATTCTACTGTAACACACTATTCCTCTTCTTGCTCATCGTGGTTGACCTGTCATAGGAATAGGTTAAGGATACTTTTCTTTATATCATAGTGTAAATTAATGAGTTTATAATCAAGTATTATATTAAGGGTGCAAGTCTGTCATTGTTAATTATTACTGTCATTCTTTTTATATTTAGAGCTTTGGTAATAACTGTGGGTTCATACCTGGGATATCTGATAAATTTGGAAAAATGCATAGGATCTATGACTCATAATTTGGGTTTTCAGTATAAGCTGATAAGTCTTTCTTTGTCTAGAAAAATGTTATATTGAAGGAAAAATAATATAGGAGAGATCATCTCTTCAGAAAATGTAGTGGAAATAATCATCGACATATTGATAACAATATTACTTGATGAAAACAGGATAAGGTCTTGACAAACTGGAGGGGAAAATATGCAGGTGGAGCAAAAAATTGGGAGGAAAGATGGAAAACTAAATATAAAAGAAACACTGAGTAGGAAAGAAGCACAAGTTAGATGTGTTATGGTTCCTCGAGGGTAGGGTGGGGTGGGGAGACCAACGTTGCTGCAAGCTTGAGGTCGGGGTAGGTCAAAAACCTAGAGGTGTTGGGGCATCATTGGTTGGTGGCTGGGTGAGGGCAAGATAAGTTCTGCTCTCAGGAAGAAATGGTGAAAAAGATGAAGAGAGATGTGTATTTTTGTTGTCTTCCCATCTAAGAATGTCTCGCCCTTGCCCATCTATTGTCCTCTTTTGCTCTTCTAATACAATTTGTTAATTTGGATTATGATCCTGTTATTTATCCCATTTTTTTCTGAGGACTATCATCCCTTGAGACAATTTAAAAGCTGGTTATCGACTGTGCTGCCTAATGTTTGGTGGTTGGTTGGATAAATTTGTTTAGACTAATCTGATGCACCTGATGACCCCATTAACTTGTATGATGTTTTGGATTTCTTTCCCCGTTTCTTTTTGAATTTTATTTTGGTACAACTGTTTGAAGTCTTTAACTAGATGCTAACCCAATGTGCCAAAATGTTCCCACGCTCTATGTTGATGACTGCATATGCAATTTTCTCCTCTATGATTCATTTCTACGTTTTCTGATCACGTGCAGAACTTGTCATATTGGAGGGTCCACTTTTGTTTTTTAAGGGAATGAAAATTAAGAGGAAGCAAATGATATTTGATGTAGGCCGAGAAAACTTGTTTTTTGAATCTTTTTATTGATATTTTTTGATTCTTTTTTGGTTTCAGTAAACATTTTGGTGCGATTTGCAAAAGACAACTTTTGTTTTAAGCAACAGTTGTTTTTAGTTTCCTGTAAAACTTCACCATAAATTTTTCTAATTCAAGTTTACCATAAACTATTGTGATCTAACTATTCCTAGAGTTTTCTGAATCCATAATGGCACACAAAATCGCTCTTTGCTTTAACTTGTTAGTGCACAATGCTTATTTTTACCCTGTAGGAAGCATCTTGATCTTCATATTACTGTCATTTCTGGTCCACAAGTTATTCTGATATCAACAAATTTGCTTGGACTTTCAGGAACCACTGGTATAATTGATTATACAAACTATGATGACATGAAATATGCTGTAAGCCATCTTCTCTTTTCTCCTTCCCTTTAGTTGGGTTTCCTTCACCTTGATGCTGTTGACAATATTTGATTTTTCCTTTATACAACTAAGAGGTGCAGCTAATATTATCCTTTCATGTGTATAGATCAAAAAGCTTGATGACTCTGAGTT</genome_strand>
        <mrna_strand>GAACAATGAGTCGGTCGAGTAGGACACTTTATGTTGGCAATCTTCCTGGTGATGTTCGTGAGCGTGAAGTGGAAGATCTCTTTTACAAG...........................................................................................................................................................................................................................................................................TATGGACCGATTGCACATATTGAGCTGAAAATTCCACCAAGACCCCCTGGTTATGCTTTTGTTGAG......................................................................................................TTTGAAGAGGCTCGTGATGCTGAAGATGCTATTCGTGGTCGTGATGGCTATGATTTTGATGGGCACCGTCTGCGG...............................................................................................GTTGAGCTTGCACATGGCGGGCGTGGTAACTCATCATCAAATGATCGTTATGGTGGTGGCGGTGGCGGCCGTGGTCAGCGTGGTGGAGGAGTGTCAAGACGTTCAGATTATCGAG.....................................................................................TGTTAGTTACAGGATTACCCCATTCAGCATCGTGGCAGGATCTCAAG...................................................................................................................GATCACATGCGCCGTGCTGGGGATGTTTGTTTCTCCCAAGTTTTCCGTGACGGGAGTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACCACTGGTATAATTGATTATACAAACTATGATGACATGAAATATGCT...............................................................................................................................ATCAAAAAGCTTGATGACTCTGAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E338532" ref_strand="+" ref_description="SGN-E338532 [cTOE-15-P8]">
      <seq>tgagtcggtcgagtaggacactttatgttggcaatcttcctggtgatgttcgtgagcgtgaagtggaagatctcttttacaagtatggaccgattgcacatattgagctgaaaattccaccaagaccccctggttatgcttttgttgagtttgaagaggctcgtgatgctgaagatgctattcgtggtcgtgatggctatgattttgatgggcaccgtctgcgggttgagcttgcacatggcgggcgtggtaactcatcatcaaatgatcgttatggtggtggcggtggcggccgtggtcagcgtggtggaggagtgtcaagacgttcagattatcgagtgttagttacaggattaccccattcagcatcgtggcaggatctcaaggatcacatgcgccgtgctggggatgtttgtttctcccaagttttccgtgacgggagtggaaccactggtataattgattatacaaactatgatgacatgaaatatgctatcaaaaagcttgatgactctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="68445" stop="64770"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68145" g_stop="68063" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68062" i_stop="67796" i_length="267">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67795" g_stop="67730" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="149" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67729" i_stop="67628" i_length="102">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67627" g_stop="67553" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="224" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67552" i_stop="67458" i_length="95">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67457" g_stop="67343" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="339" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67342" i_stop="67258" i_length="85">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67257" g_stop="67211" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="386" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67210" i_stop="67096" i_length="115">
            <donor d_prob="0.611" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67095" g_stop="67038" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="444" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="67037" i_stop="65269" i_length="1769">
            <donor d_prob="0.732" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="65268" g_stop="65219" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="494" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="65218" i_stop="65092" i_length="127">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="65091" g_stop="65070" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="516" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E338532" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338532" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68145" e_stop="68063"/>
          <exon e_start="67795" e_stop="67730"/>
          <exon e_start="67627" e_stop="67553"/>
          <exon e_start="67457" e_stop="67343"/>
          <exon e_start="67257" e_stop="67211"/>
          <exon e_start="67095" e_stop="67038"/>
          <exon e_start="65268" e_stop="65219"/>
          <exon e_start="65091" e_stop="65070"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGTCGGTCGAGTAGGACACTTTATGTTGGCAATCTTCCTGGTGATGTTCGTGAGCGTGAAGTGGAAGATCTCTTTTACAAGGTGCTTATACTCTAGATGGCTCCCTACATTCTTTGATATCATTTCATAATGCTTATAAACAAAAAGAAAAATGATTAGAAGTAAAATTATGTTTTTGAGTGAAATGGGTACAAATAGAGTGGTATGGATATAGGGAATTCATTATCGACAAACTCAAATTAAGGAGTATTTCTTTTGTAAGGCTTGTGCACATGTTTAATTGTTCTGTCACAATTTAACAGATTTTAACTGTTAGAAACTTATAAACAATTTGATGTGTGAGTGCAGTATGGACCGATTGCACATATTGAGCTGAAAATTCCACCAAGACCCCCTGGTTATGCTTTTGTTGAGGTGAGTTTGAGCTGCCTTGGTTCTGATGGATTTCATTAGATCAGCCTGCTATGCGCCTTTTAAAGCTATTCTGACCTTTATATTGGCCAAAAACTATAACAGTTTGAAGAGGCTCGTGATGCTGAAGATGCTATTCGTGGTCGTGATGGCTATGATTTTGATGGGCACCGTCTGCGGGTCGGTCAAACTTATAGTTAGCGTATAGTTTACACAAGGTTACTAGTTTTTGCCTTGTTGGATGTTGAATCTATTACAATTGCTCATACTGGCAGGTTGAGCTTGCACATGGCGGGCGTGGTAACTCATCATCAAATGATCGTTATGGTGGTGGCGGTGGCGGCCGTGGTCAGCGTGGTGGAGGAGTGTCAAGACGTTCAGATTATCGAGGTGTGTCTTATGGGTTATGTGCTTTCTACATTGGAATACATGTTATATCTTTTCTTATGTTCTGATATCTTTTGTTGTATTTCAGTGTTAGTTACAGGATTACCCCATTCAGCATCGTGGCAGGATCTCAAGGTGAGTCGGTGTCTTTGAGTTGTGAATCATAGGGACTTACCAAGAAAGTGATCCTCCTTTCCCTCAAAATTATTCTGTAATTTCTGAGTATTGTTAACTTTTATTTCTTATGTAGGATCACATGCGCCGTGCTGGGGATGTTTGTTTCTCCCAAGTTTTCCGTGACGGGAGTGGTAAGATTTAAACAGCTAATGGCAGATCTACTTTTTCTCTTTGAACTGGTATAATGGTTTAACTGTCAAGCACACGGAACTCCTCCATGTGGAATGGCAACCTACAATGATACACCAAGCAATAAGTCTTTGATGTGAGCTTACAATGGTACTCACTAATTGTACTGATGATTTGGAGAAAGACCTGTATACAAACTGTATATCGAAAGATGGAGAATTCTACTGTAACACACTATTCCTCTTCTTGCTCATCGTGGTTGACCTGTCATAGGAATAGGTTAAGGATACTTTTCTTTATATCATAGTGTAAATTAATGAGTTTATAATCAAGTATTATATTAAGGGTGCAAGTCTGTCATTGTTAATTATTACTGTCATTCTTTTTATATTTAGAGCTTTGGTAATAACTGTGGGTTCATACCTGGGATATCTGATAAATTTGGAAAAATGCATAGGATCTATGACTCATAATTTGGGTTTTCAGTATAAGCTGATAAGTCTTTCTTTGTCTAGAAAAATGTTATATTGAAGGAAAAATAATATAGGAGAGATCATCTCTTCAGAAAATGTAGTGGAAATAATCATCGACATATTGATAACAATATTACTTGATGAAAACAGGATAAGGTCTTGACAAACTGGAGGGGAAAATATGCAGGTGGAGCAAAAAATTGGGAGGAAAGATGGAAAACTAAATATAAAAGAAACACTGAGTAGGAAAGAAGCACAAGTTAGATGTGTTATGGTTCCTCGAGGGTAGGGTGGGGTGGGGAGACCAACGTTGCTGCAAGCTTGAGGTCGGGGTAGGTCAAAAACCTAGAGGTGTTGGGGCATCATTGGTTGGTGGCTGGGTGAGGGCAAGATAAGTTCTGCTCTCAGGAAGAAATGGTGAAAAAGATGAAGAGAGATGTGTATTTTTGTTGTCTTCCCATCTAAGAATGTCTCGCCCTTGCCCATCTATTGTCCTCTTTTGCTCTTCTAATACAATTTGTTAATTTGGATTATGATCCTGTTATTTATCCCATTTTTTTCTGAGGACTATCATCCCTTGAGACAATTTAAAAGCTGGTTATCGACTGTGCTGCCTAATGTTTGGTGGTTGGTTGGATAAATTTGTTTAGACTAATCTGATGCACCTGATGACCCCATTAACTTGTATGATGTTTTGGATTTCTTTCCCCGTTTCTTTTTGAATTTTATTTTGGTACAACTGTTTGAAGTCTTTAACTAGATGCTAACCCAATGTGCCAAAATGTTCCCACGCTCTATGTTGATGACTGCATATGCAATTTTCTCCTCTATGATTCATTTCTACGTTTTCTGATCACGTGCAGAACTTGTCATATTGGAGGGTCCACTTTTGTTTTTTAAGGGAATGAAAATTAAGAGGAAGCAAATGATATTTGATGTAGGCCGAGAAAACTTGTTTTTTGAATCTTTTTATTGATATTTTTTGATTCTTTTTTGGTTTCAGTAAACATTTTGGTGCGATTTGCAAAAGACAACTTTTGTTTTAAGCAACAGTTGTTTTTAGTTTCCTGTAAAACTTCACCATAAATTTTTCTAATTCAAGTTTACCATAAACTATTGTGATCTAACTATTCCTAGAGTTTTCTGAATCCATAATGGCACACAAAATCGCTCTTTGCTTTAACTTGTTAGTGCACAATGCTTATTTTTACCCTGTAGGAAGCATCTTGATCTTCATATTACTGTCATTTCTGGTCCACAAGTTATTCTGATATCAACAAATTTGCTTGGACTTTCAGGAACCACTGGTATAATTGATTATACAAACTATGATGACATGAAATATGCTGTAAGCCATCTTCTCTTTTCTCCTTCCCTTTAGTTGGGTTTCCTTCACCTTGATGCTGTTGACAATATTTGATTTTTCCTTTATACAACTAAGAGGTGCAGCTAATATTATCCTTTCATGTGTATAGATCAAAAAGCTTGATGACTCTG</genome_strand>
        <mrna_strand>TGAGTCGGTCGAGTAGGACACTTTATGTTGGCAATCTTCCTGGTGATGTTCGTGAGCGTGAAGTGGAAGATCTCTTTTACAAG...........................................................................................................................................................................................................................................................................TATGGACCGATTGCACATATTGAGCTGAAAATTCCACCAAGACCCCCTGGTTATGCTTTTGTTGAG......................................................................................................TTTGAAGAGGCTCGTGATGCTGAAGATGCTATTCGTGGTCGTGATGGCTATGATTTTGATGGGCACCGTCTGCGG...............................................................................................GTTGAGCTTGCACATGGCGGGCGTGGTAACTCATCATCAAATGATCGTTATGGTGGTGGCGGTGGCGGCCGTGGTCAGCGTGGTGGAGGAGTGTCAAGACGTTCAGATTATCGAG.....................................................................................TGTTAGTTACAGGATTACCCCATTCAGCATCGTGGCAGGATCTCAAG...................................................................................................................GATCACATGCGCCGTGCTGGGGATGTTTGTTTCTCCCAAGTTTTCCGTGACGGGAGTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACCACTGGTATAATTGATTATACAAACTATGATGACATGAAATATGCT...............................................................................................................................ATCAAAAAGCTTGATGACTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E728830" ref_strand="+" ref_description="SGN-E728830 [LA19AD04]">
      <seq>tcttttacaagtatggaccgattgcacatattgagctgaaaattccaccaagaccccctggttatgcttttgttgagtttgaagaggctcgtgatgctgaagatgctattcgtgggcgtgatggctatgattttgatgggcaccgtctgcgggttgagcttgcacatggcgggcgtggtaactcatcatcaaatgatcgttatggtggtggcggtggcggccgtggtcagcgtggtggaggagtgtcaagacgttcagattatcgagtgttagttacaggattaccccattcagcatcgtggctggatctcaaggatcacatgcgccgtgctggggatgtttgtttctcccaagttttccgtgacgggagtggaaccactggtataattgattatacaaactatgatgacatgaaatatgctatcaaaaagcttgatgactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="68100" stop="64772"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68073" g_stop="68063" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68062" i_stop="67796" i_length="267">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67795" g_stop="67730" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="77" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67729" i_stop="67628" i_length="102">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67627" g_stop="67553" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="152" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67552" i_stop="67458" i_length="95">
            <donor d_prob="0.964" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67457" g_stop="67343" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="267" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67342" i_stop="67258" i_length="85">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67257" g_stop="67211" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="314" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67210" i_stop="67096" i_length="115">
            <donor d_prob="0.611" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67095" g_stop="67038" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="372" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="67037" i_stop="65269" i_length="1769">
            <donor d_prob="0.732" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="65268" g_stop="65219" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="422" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="65218" i_stop="65092" i_length="127">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="65091" g_stop="65072" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="442" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E728830" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728830" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68073" e_stop="68063"/>
          <exon e_start="67795" e_stop="67730"/>
          <exon e_start="67627" e_stop="67553"/>
          <exon e_start="67457" e_stop="67343"/>
          <exon e_start="67257" e_stop="67211"/>
          <exon e_start="67095" e_stop="67038"/>
          <exon e_start="65268" e_stop="65219"/>
          <exon e_start="65091" e_stop="65072"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTTACAAGGTGCTTATACTCTAGATGGCTCCCTACATTCTTTGATATCATTTCATAATGCTTATAAACAAAAAGAAAAATGATTAGAAGTAAAATTATGTTTTTGAGTGAAATGGGTACAAATAGAGTGGTATGGATATAGGGAATTCATTATCGACAAACTCAAATTAAGGAGTATTTCTTTTGTAAGGCTTGTGCACATGTTTAATTGTTCTGTCACAATTTAACAGATTTTAACTGTTAGAAACTTATAAACAATTTGATGTGTGAGTGCAGTATGGACCGATTGCACATATTGAGCTGAAAATTCCACCAAGACCCCCTGGTTATGCTTTTGTTGAGGTGAGTTTGAGCTGCCTTGGTTCTGATGGATTTCATTAGATCAGCCTGCTATGCGCCTTTTAAAGCTATTCTGACCTTTATATTGGCCAAAAACTATAACAGTTTGAAGAGGCTCGTGATGCTGAAGATGCTATTCGTGGTCGTGATGGCTATGATTTTGATGGGCACCGTCTGCGGGTCGGTCAAACTTATAGTTAGCGTATAGTTTACACAAGGTTACTAGTTTTTGCCTTGTTGGATGTTGAATCTATTACAATTGCTCATACTGGCAGGTTGAGCTTGCACATGGCGGGCGTGGTAACTCATCATCAAATGATCGTTATGGTGGTGGCGGTGGCGGCCGTGGTCAGCGTGGTGGAGGAGTGTCAAGACGTTCAGATTATCGAGGTGTGTCTTATGGGTTATGTGCTTTCTACATTGGAATACATGTTATATCTTTTCTTATGTTCTGATATCTTTTGTTGTATTTCAGTGTTAGTTACAGGATTACCCCATTCAGCATCGTGGCAGGATCTCAAGGTGAGTCGGTGTCTTTGAGTTGTGAATCATAGGGACTTACCAAGAAAGTGATCCTCCTTTCCCTCAAAATTATTCTGTAATTTCTGAGTATTGTTAACTTTTATTTCTTATGTAGGATCACATGCGCCGTGCTGGGGATGTTTGTTTCTCCCAAGTTTTCCGTGACGGGAGTGGTAAGATTTAAACAGCTAATGGCAGATCTACTTTTTCTCTTTGAACTGGTATAATGGTTTAACTGTCAAGCACACGGAACTCCTCCATGTGGAATGGCAACCTACAATGATACACCAAGCAATAAGTCTTTGATGTGAGCTTACAATGGTACTCACTAATTGTACTGATGATTTGGAGAAAGACCTGTATACAAACTGTATATCGAAAGATGGAGAATTCTACTGTAACACACTATTCCTCTTCTTGCTCATCGTGGTTGACCTGTCATAGGAATAGGTTAAGGATACTTTTCTTTATATCATAGTGTAAATTAATGAGTTTATAATCAAGTATTATATTAAGGGTGCAAGTCTGTCATTGTTAATTATTACTGTCATTCTTTTTATATTTAGAGCTTTGGTAATAACTGTGGGTTCATACCTGGGATATCTGATAAATTTGGAAAAATGCATAGGATCTATGACTCATAATTTGGGTTTTCAGTATAAGCTGATAAGTCTTTCTTTGTCTAGAAAAATGTTATATTGAAGGAAAAATAATATAGGAGAGATCATCTCTTCAGAAAATGTAGTGGAAATAATCATCGACATATTGATAACAATATTACTTGATGAAAACAGGATAAGGTCTTGACAAACTGGAGGGGAAAATATGCAGGTGGAGCAAAAAATTGGGAGGAAAGATGGAAAACTAAATATAAAAGAAACACTGAGTAGGAAAGAAGCACAAGTTAGATGTGTTATGGTTCCTCGAGGGTAGGGTGGGGTGGGGAGACCAACGTTGCTGCAAGCTTGAGGTCGGGGTAGGTCAAAAACCTAGAGGTGTTGGGGCATCATTGGTTGGTGGCTGGGTGAGGGCAAGATAAGTTCTGCTCTCAGGAAGAAATGGTGAAAAAGATGAAGAGAGATGTGTATTTTTGTTGTCTTCCCATCTAAGAATGTCTCGCCCTTGCCCATCTATTGTCCTCTTTTGCTCTTCTAATACAATTTGTTAATTTGGATTATGATCCTGTTATTTATCCCATTTTTTTCTGAGGACTATCATCCCTTGAGACAATTTAAAAGCTGGTTATCGACTGTGCTGCCTAATGTTTGGTGGTTGGTTGGATAAATTTGTTTAGACTAATCTGATGCACCTGATGACCCCATTAACTTGTATGATGTTTTGGATTTCTTTCCCCGTTTCTTTTTGAATTTTATTTTGGTACAACTGTTTGAAGTCTTTAACTAGATGCTAACCCAATGTGCCAAAATGTTCCCACGCTCTATGTTGATGACTGCATATGCAATTTTCTCCTCTATGATTCATTTCTACGTTTTCTGATCACGTGCAGAACTTGTCATATTGGAGGGTCCACTTTTGTTTTTTAAGGGAATGAAAATTAAGAGGAAGCAAATGATATTTGATGTAGGCCGAGAAAACTTGTTTTTTGAATCTTTTTATTGATATTTTTTGATTCTTTTTTGGTTTCAGTAAACATTTTGGTGCGATTTGCAAAAGACAACTTTTGTTTTAAGCAACAGTTGTTTTTAGTTTCCTGTAAAACTTCACCATAAATTTTTCTAATTCAAGTTTACCATAAACTATTGTGATCTAACTATTCCTAGAGTTTTCTGAATCCATAATGGCACACAAAATCGCTCTTTGCTTTAACTTGTTAGTGCACAATGCTTATTTTTACCCTGTAGGAAGCATCTTGATCTTCATATTACTGTCATTTCTGGTCCACAAGTTATTCTGATATCAACAAATTTGCTTGGACTTTCAGGAACCACTGGTATAATTGATTATACAAACTATGATGACATGAAATATGCTGTAAGCCATCTTCTCTTTTCTCCTTCCCTTTAGTTGGGTTTCCTTCACCTTGATGCTGTTGACAATATTTGATTTTTCCTTTATACAACTAAGAGGTGCAGCTAATATTATCCTTTCATGTGTATAGATCAAAAAGCTTGATGACTC</genome_strand>
        <mrna_strand>TCTTTTACAAG...........................................................................................................................................................................................................................................................................TATGGACCGATTGCACATATTGAGCTGAAAATTCCACCAAGACCCCCTGGTTATGCTTTTGTTGAG......................................................................................................TTTGAAGAGGCTCGTGATGCTGAAGATGCTATTCGTGGGCGTGATGGCTATGATTTTGATGGGCACCGTCTGCGG...............................................................................................GTTGAGCTTGCACATGGCGGGCGTGGTAACTCATCATCAAATGATCGTTATGGTGGTGGCGGTGGCGGCCGTGGTCAGCGTGGTGGAGGAGTGTCAAGACGTTCAGATTATCGAG.....................................................................................TGTTAGTTACAGGATTACCCCATTCAGCATCGTGGCTGGATCTCAAG...................................................................................................................GATCACATGCGCCGTGCTGGGGATGTTTGTTTCTCCCAAGTTTTCCGTGACGGGAGTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACCACTGGTATAATTGATTATACAAACTATGATGACATGAAATATGCT...............................................................................................................................ATCAAAAAGCTTGATGACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E400179" ref_strand="+" ref_description="SGN-E400179 [cSTC-5-B17]">
      <seq>tgcttcttatgaacaatgagtcggtcgagtaggacactttatgttggcaatcttcctggtgatgttcgtgagcgtgaagtggaagatctgtttcacaagtatggcccgatagctcatattgaactgaaaattccaccaagaccccctggttatgcttttgttgagtttgaagaggctcgcgatgctgaagatgctattcgtggtcgtgatggctatgattttgatgggcaccgtctgcgggttgagcttgcacatggcgggcgtggtaactcatcatcaaatgatcgttatggtggcggcggtggtggtggtggtggcggcggccgtggtcagcgtggtggaggagtgtccagacgttctgattttcgagtgttagttacaggattaccccattcagcatcgtggcaggatctcaaggatcacatgcgtcgtgctggggatgtttgtttctcccaagttttccgtgatgggagtggcaccactggtataattgattatacaaactatgatgacatgaaatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="68461" stop="64921"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68161" g_stop="68063" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68062" i_stop="67796" i_length="267">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67795" g_stop="67730" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="165" r_length="66" r_score="0.939"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67729" i_stop="67628" i_length="102">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67627" g_stop="67553" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="240" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67552" i_stop="67458" i_length="95">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67457" g_stop="67343" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="353" r_length="113" r_score="0.783"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67342" i_stop="67277" i_length="66">
            <donor d_prob="0.982" d_score="0.52"/>
            <acceptor a_prob="0.000" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67276" g_stop="67211" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="417" r_length="64" r_score="0.879"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67210" i_stop="67096" i_length="115">
            <donor d_prob="0.611" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67095" g_stop="67038" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="475" r_length="58" r_score="0.966"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="67037" i_stop="65269" i_length="1769">
            <donor d_prob="0.732" d_score="0.96"/>
            <acceptor a_prob="0.949" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="65268" g_stop="65221" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="523" r_length="48" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E400179" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E400179" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68161" e_stop="68063"/>
          <exon e_start="67795" e_stop="67730"/>
          <exon e_start="67627" e_stop="67553"/>
          <exon e_start="67457" e_stop="67343"/>
          <exon e_start="67276" e_stop="67211"/>
          <exon e_start="67095" e_stop="67038"/>
          <exon e_start="65268" e_stop="65221"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCTTTCAGGAACAATGAGTCGGTCGAGTAGGACACTTTATGTTGGCAATCTTCCTGGTGATGTTCGTGAGCGTGAAGTGGAAGATCTCTTTTACAAGGTGCTTATACTCTAGATGGCTCCCTACATTCTTTGATATCATTTCATAATGCTTATAAACAAAAAGAAAAATGATTAGAAGTAAAATTATGTTTTTGAGTGAAATGGGTACAAATAGAGTGGTATGGATATAGGGAATTCATTATCGACAAACTCAAATTAAGGAGTATTTCTTTTGTAAGGCTTGTGCACATGTTTAATTGTTCTGTCACAATTTAACAGATTTTAACTGTTAGAAACTTATAAACAATTTGATGTGTGAGTGCAGTATGGACCGATTGCACATATTGAGCTGAAAATTCCACCAAGACCCCCTGGTTATGCTTTTGTTGAGGTGAGTTTGAGCTGCCTTGGTTCTGATGGATTTCATTAGATCAGCCTGCTATGCGCCTTTTAAAGCTATTCTGACCTTTATATTGGCCAAAAACTATAACAGTTTGAAGAGGCTCGTGATGCTGAAGATGCTATTCGTGGTCGTGATGGCTATGATTTTGATGGGCACCGTCTGCGGGTCGGTCAAACTTATAGTTAGCGTATAGTTTACACAAGGTTACTAGTTTTTGCCTTGTTGGATGTTGAATCTATTACAATTGCTCATACTGGCAGGTTGAGCTTGCACATGGCGGGCGTGGTAACTCATCATCAAATGATCGTTATGGTGGTGGCGGTGGCGGCCGTGGTCAGCGTGGTGGAGGAGTGTCA-AGACGTTCA-GATTATCGAGGTGTGTCTTATGGGTTATGTGCTTTCTACATTGGAATACATGTTATATCTTTTCTTATGTTCTGATATCTTTTGTTGTATTTCAGTGTTAGTTACAGGATTACCCCATTCAGCATCGTGGCAGGATCTCAAGGTGAGTCGGTGTCTTTGAGTTGTGAATCATAGGGACTTACCAAGAAAGTGATCCTCCTTTCCCTCAAAATTATTCTGTAATTTCTGAGTATTGTTAACTTTTATTTCTTATGTAGGATCACATGCGCCGTGCTGGGGATGTTTGTTTCTCCCAAGTTTTCCGTGACGGGAGTGGTAAGATTTAAACAGCTAATGGCAGATCTACTTTTTCTCTTTGAACTGGTATAATGGTTTAACTGTCAAGCACACGGAACTCCTCCATGTGGAATGGCAACCTACAATGATACACCAAGCAATAAGTCTTTGATGTGAGCTTACAATGGTACTCACTAATTGTACTGATGATTTGGAGAAAGACCTGTATACAAACTGTATATCGAAAGATGGAGAATTCTACTGTAACACACTATTCCTCTTCTTGCTCATCGTGGTTGACCTGTCATAGGAATAGGTTAAGGATACTTTTCTTTATATCATAGTGTAAATTAATGAGTTTATAATCAAGTATTATATTAAGGGTGCAAGTCTGTCATTGTTAATTATTACTGTCATTCTTTTTATATTTAGAGCTTTGGTAATAACTGTGGGTTCATACCTGGGATATCTGATAAATTTGGAAAAATGCATAGGATCTATGACTCATAATTTGGGTTTTCAGTATAAGCTGATAAGTCTTTCTTTGTCTAGAAAAATGTTATATTGAAGGAAAAATAATATAGGAGAGATCATCTCTTCAGAAAATGTAGTGGAAATAATCATCGACATATTGATAACAATATTACTTGATGAAAACAGGATAAGGTCTTGACAAACTGGAGGGGAAAATATGCAGGTGGAGCAAAAAATTGGGAGGAAAGATGGAAAACTAAATATAAAAGAAACACTGAGTAGGAAAGAAGCACAAGTTAGATGTGTTATGGTTCCTCGAGGGTAGGGTGGGGTGGGGAGACCAACGTTGCTGCAAGCTTGAGGTCGGGGTAGGTCAAAAACCTAGAGGTGTTGGGGCATCATTGGTTGGTGGCTGGGTGAGGGCAAGATAAGTTCTGCTCTCAGGAAGAAATGGTGAAAAAGATGAAGAGAGATGTGTATTTTTGTTGTCTTCCCATCTAAGAATGTCTCGCCCTTGCCCATCTATTGTCCTCTTTTGCTCTTCTAATACAATTTGTTAATTTGGATTATGATCCTGTTATTTATCCCATTTTTTTCTGAGGACTATCATCCCTTGAGACAATTTAAAAGCTGGTTATCGACTGTGCTGCCTAATGTTTGGTGGTTGGTTGGATAAATTTGTTTAGACTAATCTGATGCACCTGATGACCCCATTAACTTGTATGATGTTTTGGATTTCTTTCCCCGTTTCTTTTTGAATTTTATTTTGGTACAACTGTTTGAAGTCTTTAACTAGATGCTAACCCAATGTGCCAAAATGTTCCCACGCTCTATGTTGATGACTGCATATGCAATTTTCTCCTCTATGATTCATTTCTACGTTTTCTGATCACGTGCAGAACTTGTCATATTGGAGGGTCCACTTTTGTTTTTTAAGGGAATGAAAATTAAGAGGAAGCAAATGATATTTGATGTAGGCCGAGAAAACTTGTTTTTTGAATCTTTTTATTGATATTTTTTGATTCTTTTTTGGTTTCAGTAAACATTTTGGTGCGATTTGCAAAAGACAACTTTTGTTTTAAGCAACAGTTGTTTTTAGTTTCCTGTAAAACTTCACCATAAATTTTTCTAATTCAAGTTTACCATAAACTATTGTGATCTAACTATTCCTAGAGTTTTCTGAATCCATAATGGCACACAAAATCGCTCTTTGCTTTAACTTGTTAGTGCACAATGCTTATTTTTACCCTGTAGGAAGCATCTTGATCTTCATATTACTGTCATTTCTGGTCCACAAGTTATTCTGATATCAACAAATTTGCTTGGACTTTCAGGAACCACTGGTATAATTGATTATACAAACTATGATGACATGAAATATG</genome_strand>
        <mrna_strand>TGCTTCTTATGAACAATGAGTCGGTCGAGTAGGACACTTTATGTTGGCAATCTTCCTGGTGATGTTCGTGAGCGTGAAGTGGAAGATCTGTTTCACAAG...........................................................................................................................................................................................................................................................................TATGGCCCGATAGCTCATATTGAACTGAAAATTCCACCAAGACCCCCTGGTTATGCTTTTGTTGAG......................................................................................................TTTGAAGAGGCTCGCGATGCTGAAGATGCTATTCGTGGTCGTGATGGCTATGATTTTGATGGGCACCGTCTGCGG...............................................................................................GTTGAGCTTGCACATGGCGGGCGTGGTAACTCATCATCAAATGATCGTTATGGTGGCGGCGGTGGTGGTGGTGGT--G-GCGGCGGCCGTG-GTCAGCGTGGTGGAGGAGTGTCCAG..................................................................ACGTTCTGAT-T-TTCGAGTGTTAGTTACAGGATTACCCCATTCAGCATCGTGGCAGGATCTCAAG...................................................................................................................GATCACATGCGTCGTGCTGGGGATGTTTGTTTCTCCCAAGTTTTCCGTGATGGGAGTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACCACTGGTATAATTGATTATACAAACTATGATGACATGAAATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E311338" ref_strand="+" ref_description="SGN-E311338 [cLEZ-18-O9]">
      <seq>ttacaagtatggaccgattgcacatattgagctgaaaattccaccaagaccccctggttatgcttttgttgagtttgaagaggctcgtgatgctgaagatgctattcgtggtcgtgatggctatgattttgatgggcaccgtctgcgggttgagcttgcacatggcgggcgtggtaactcatcatcaaatgatcgttatggtggtggcggtggcggccgtggtcagcgtggtggaggagtgtcaagacgttcagattatcgagtgttagttaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="68100" stop="67039"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68069" g_stop="68063" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="7" r_length="7" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68062" i_stop="67796" i_length="267">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67795" g_stop="67730" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="73" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67729" i_stop="67628" i_length="102">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67627" g_stop="67553" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="148" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67552" i_stop="67458" i_length="95">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67457" g_stop="67343" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="263" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67342" i_stop="67258" i_length="85">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67257" g_stop="67247" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="274" r_length="11" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E311338" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>274</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68069" e_stop="68063"/>
          <exon e_start="67795" e_stop="67730"/>
          <exon e_start="67627" e_stop="67553"/>
          <exon e_start="67457" e_stop="67343"/>
          <exon e_start="67257" e_stop="67247"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACAAGGTGCTTATACTCTAGATGGCTCCCTACATTCTTTGATATCATTTCATAATGCTTATAAACAAAAAGAAAAATGATTAGAAGTAAAATTATGTTTTTGAGTGAAATGGGTACAAATAGAGTGGTATGGATATAGGGAATTCATTATCGACAAACTCAAATTAAGGAGTATTTCTTTTGTAAGGCTTGTGCACATGTTTAATTGTTCTGTCACAATTTAACAGATTTTAACTGTTAGAAACTTATAAACAATTTGATGTGTGAGTGCAGTATGGACCGATTGCACATATTGAGCTGAAAATTCCACCAAGACCCCCTGGTTATGCTTTTGTTGAGGTGAGTTTGAGCTGCCTTGGTTCTGATGGATTTCATTAGATCAGCCTGCTATGCGCCTTTTAAAGCTATTCTGACCTTTATATTGGCCAAAAACTATAACAGTTTGAAGAGGCTCGTGATGCTGAAGATGCTATTCGTGGTCGTGATGGCTATGATTTTGATGGGCACCGTCTGCGGGTCGGTCAAACTTATAGTTAGCGTATAGTTTACACAAGGTTACTAGTTTTTGCCTTGTTGGATGTTGAATCTATTACAATTGCTCATACTGGCAGGTTGAGCTTGCACATGGCGGGCGTGGTAACTCATCATCAAATGATCGTTATGGTGGTGGCGGTGGCGGCCGTGGTCAGCGTGGTGGAGGAGTGTCAAGACGTTCAGATTATCGAGGTGTGTCTTATGGGTTATGTGCTTTCTACATTGGAATACATGTTATATCTTTTCTTATGTTCTGATATCTTTTGTTGTATTTCAGTGTTAGTTACA</genome_strand>
        <mrna_strand>TTACAAG...........................................................................................................................................................................................................................................................................TATGGACCGATTGCACATATTGAGCTGAAAATTCCACCAAGACCCCCTGGTTATGCTTTTGTTGAG......................................................................................................TTTGAAGAGGCTCGTGATGCTGAAGATGCTATTCGTGGTCGTGATGGCTATGATTTTGATGGGCACCGTCTGCGG...............................................................................................GTTGAGCTTGCACATGGCGGGCGTGGTAACTCATCATCAAATGATCGTTATGGTGGTGGCGGTGGCGGCCGTGGTCAGCGTGGTGGAGGAGTGTCAAGACGTTCAGATTATCGAG.....................................................................................TGTTAGTTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E313109" ref_strand="+" ref_description="SGN-E313109 [cTOA-14-L8]">
      <seq>aatttcctcttcttctacgctttctgctctcgatcttcccaggaacaatgagtcggtcgagtaggacactttatgttggcaatcttcctggtgatgttcgtgagcgtgaagtggaagatctcttttacaagtatggaccgattgcacatattgagctgaaaattccaccaagaccccctggttatgcttttgttgagtttgaagaggctcgtgatgctgaagatgctattcgtggtcgtgatggctatgattttgatgggcaccgtctgcgggttgagcttgcacatggcgggcgtggtaactcatcatcaaatgatcgttatggtggtggcggtggcagccgtggtcagcgtggtggaggagtgtcaagacgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="68937" stop="67056"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68637" g_stop="68596" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68595" i_stop="68152" i_length="444">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68151" g_stop="68063" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="131" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68062" i_stop="67796" i_length="267">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67795" g_stop="67730" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="197" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67729" i_stop="67628" i_length="102">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67627" g_stop="67553" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="272" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67552" i_stop="67458" i_length="95">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67457" g_stop="67356" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="374" r_length="102" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E313109" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>374</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313109" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68637" e_stop="68596"/>
          <exon e_start="68151" e_stop="68063"/>
          <exon e_start="67795" e_stop="67730"/>
          <exon e_start="67627" e_stop="67553"/>
          <exon e_start="67457" e_stop="67356"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTCCTCTTCTTCTACGCTTTCTGCTCTCGATCTTCCCAGGTATGTTCTCTAATGGAGGTTACGTAAATCGTTTTTTTTAGCTTTAATTGATATAATCATCAATATATCGTCAAAATATAGTTCAATTTTTTCCTTCTTTCCCATTTACCTTGCTTGTCAATGCAAAAATGTCCGGGTTGTATAAATTAATGTCAGTAAAATTGTGGAAAGTTGCTTTGTTTATTCTTTAGATGATCAAGATACGTTTCTGCGACTGAAATTGGTTTTGCAACTGAATAATTACTAGAGTTGAAGCTTTTATCCTTTTTCTTTTCCCGTTTTGTCCTTAGAGAGAATGTATGAACTGTTTTAAGTCGTTGTTGTTTTTTGCTTAACTGCAAGAGGTGCTTTTTTCTTGTCCTTGTGGTCAATTAACTGCAAGAGGTGCTTGTTTCTTGTTTTTGTGGACAATTGACTGCAAGTGAATGTGGTTTTGCCTTTCAGGAACAATGAGTCGGTCGAGTAGGACACTTTATGTTGGCAATCTTCCTGGTGATGTTCGTGAGCGTGAAGTGGAAGATCTCTTTTACAAGGTGCTTATACTCTAGATGGCTCCCTACATTCTTTGATATCATTTCATAATGCTTATAAACAAAAAGAAAAATGATTAGAAGTAAAATTATGTTTTTGAGTGAAATGGGTACAAATAGAGTGGTATGGATATAGGGAATTCATTATCGACAAACTCAAATTAAGGAGTATTTCTTTTGTAAGGCTTGTGCACATGTTTAATTGTTCTGTCACAATTTAACAGATTTTAACTGTTAGAAACTTATAAACAATTTGATGTGTGAGTGCAGTATGGACCGATTGCACATATTGAGCTGAAAATTCCACCAAGACCCCCTGGTTATGCTTTTGTTGAGGTGAGTTTGAGCTGCCTTGGTTCTGATGGATTTCATTAGATCAGCCTGCTATGCGCCTTTTAAAGCTATTCTGACCTTTATATTGGCCAAAAACTATAACAGTTTGAAGAGGCTCGTGATGCTGAAGATGCTATTCGTGGTCGTGATGGCTATGATTTTGATGGGCACCGTCTGCGGGTCGGTCAAACTTATAGTTAGCGTATAGTTTACACAAGGTTACTAGTTTTTGCCTTGTTGGATGTTGAATCTATTACAATTGCTCATACTGGCAGGTTGAGCTTGCACATGGCGGGCGTGGTAACTCATCATCAAATGATCGTTATGGTGGTGGCGGTGGCGGCCGTGGTCAGCGTGGTGGAGGAGTGTCAAGACGT</genome_strand>
        <mrna_strand>AATTTCCTCTTCTTCTACGCTTTCTGCTCTCGATCTTCCCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAATGAGTCGGTCGAGTAGGACACTTTATGTTGGCAATCTTCCTGGTGATGTTCGTGAGCGTGAAGTGGAAGATCTCTTTTACAAG...........................................................................................................................................................................................................................................................................TATGGACCGATTGCACATATTGAGCTGAAAATTCCACCAAGACCCCCTGGTTATGCTTTTGTTGAG......................................................................................................TTTGAAGAGGCTCGTGATGCTGAAGATGCTATTCGTGGTCGTGATGGCTATGATTTTGATGGGCACCGTCTGCGG...............................................................................................GTTGAGCTTGCACATGGCGGGCGTGGTAACTCATCATCAAATGATCGTTATGGTGGTGGCGGTGGCAGCCGTGGTCAGCGTGGTGGAGGAGTGTCAAGACGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E399744" ref_strand="+" ref_description="SGN-E399744 [cSTC-2-C16]">
      <seq>caggaacaatgagtcggtcgagtaggacactttatgttggcaatcttcctggtgatgttcgtgagcgtgaagtggaagatctgtttcacaagtatggcccgatagctcatattgaactgaaaattcaccaagaccccctggttatgcttttgttgagtttgaagaggctcgcgatgctgaagatgctattcgtggtcgtgatggctatgattttgatgggcaccgtctgcgggttgagcttgcacatggcgggcgtggtaactcatcatcaaatgatcgttatggtggcggcggtggtggtggtggtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="68454" stop="67083"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68154" g_stop="68063" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68062" i_stop="67796" i_length="267">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67795" g_stop="67730" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="157" r_length="65" r_score="0.924"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67729" i_stop="67628" i_length="102">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67627" g_stop="67553" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="232" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67552" i_stop="67458" i_length="95">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67457" g_stop="67381" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="309" r_length="77" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E399744" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>310</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E399744" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68154" e_stop="68063"/>
          <exon e_start="67795" e_stop="67730"/>
          <exon e_start="67627" e_stop="67553"/>
          <exon e_start="67457" e_stop="67381"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGAACAATGAGTCGGTCGAGTAGGACACTTTATGTTGGCAATCTTCCTGGTGATGTTCGTGAGCGTGAAGTGGAAGATCTCTTTTACAAGGTGCTTATACTCTAGATGGCTCCCTACATTCTTTGATATCATTTCATAATGCTTATAAACAAAAAGAAAAATGATTAGAAGTAAAATTATGTTTTTGAGTGAAATGGGTACAAATAGAGTGGTATGGATATAGGGAATTCATTATCGACAAACTCAAATTAAGGAGTATTTCTTTTGTAAGGCTTGTGCACATGTTTAATTGTTCTGTCACAATTTAACAGATTTTAACTGTTAGAAACTTATAAACAATTTGATGTGTGAGTGCAGTATGGACCGATTGCACATATTGAGCTGAAAATTCCACCAAGACCCCCTGGTTATGCTTTTGTTGAGGTGAGTTTGAGCTGCCTTGGTTCTGATGGATTTCATTAGATCAGCCTGCTATGCGCCTTTTAAAGCTATTCTGACCTTTATATTGGCCAAAAACTATAACAGTTTGAAGAGGCTCGTGATGCTGAAGATGCTATTCGTGGTCGTGATGGCTATGATTTTGATGGGCACCGTCTGCGGGTCGGTCAAACTTATAGTTAGCGTATAGTTTACACAAGGTTACTAGTTTTTGCCTTGTTGGATGTTGAATCTATTACAATTGCTCATACTGGCAGGTTGAGCTTGCACATGGCGGGCGTGGTAACTCATCATCAAATGATCGTTATGGTGGTGGCGGTGGCGGCCGTGGTCA</genome_strand>
        <mrna_strand>CAGGAACAATGAGTCGGTCGAGTAGGACACTTTATGTTGGCAATCTTCCTGGTGATGTTCGTGAGCGTGAAGTGGAAGATCTGTTTCACAAG...........................................................................................................................................................................................................................................................................TATGGCCCGATAGCTCATATTGAACTGAAAATT-CACCAAGACCCCCTGGTTATGCTTTTGTTGAG......................................................................................................TTTGAAGAGGCTCGCGATGCTGAAGATGCTATTCGTGGTCGTGATGGCTATGATTTTGATGGGCACCGTCTGCGG...............................................................................................GTTGAGCTTGCACATGGCGGGCGTGGTAACTCATCATCAAATGATCGTTATGGTGGCGGCGGTGGTGGTGGTGGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E277755" ref_strand="-" ref_description="SGN-E277755 [cLEL-5-F13](-)">
      <seq>gcacgagcttcccaggaacaatgagtcggtcgagtaggacactttatgttggcaatcttcctggtgatgtctcgtgagcgtgaagtggaagatctcttttacaagtatggaccgattgcacatattgagctgaaaattccaccaagaccccctggttatgcttttgttgagtttgaagaggctcgtgatgctgaagatgctattcgtggtcgtgatggctatgattttgatgggcaccgtctgcgggttgagcttgcacatggcgggcgtggtaactcatcatcaaatgatcgttatggtggtggcggtggcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="68460" stop="67091"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68151" g_stop="68063" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="105" r_length="90" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68062" i_stop="67796" i_length="267">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67795" g_stop="67730" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="171" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67729" i_stop="67628" i_length="102">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67627" g_stop="67553" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="246" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67552" i_stop="67458" i_length="95">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67457" g_stop="67391" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="313" r_length="67" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E277755" ref_strand="-">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>297</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277755" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="68151" e_stop="68063"/>
          <exon e_start="67795" e_stop="67730"/>
          <exon e_start="67627" e_stop="67553"/>
          <exon e_start="67457" e_stop="67391"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACAATGAGTCGGTCGAGTAGGACACTTTATGTTGGCAATCTTCCTGGTGATGT-TCGTGAGCGTGAAGTGGAAGATCTCTTTTACAAGGTGCTTATACTCTAGATGGCTCCCTACATTCTTTGATATCATTTCATAATGCTTATAAACAAAAAGAAAAATGATTAGAAGTAAAATTATGTTTTTGAGTGAAATGGGTACAAATAGAGTGGTATGGATATAGGGAATTCATTATCGACAAACTCAAATTAAGGAGTATTTCTTTTGTAAGGCTTGTGCACATGTTTAATTGTTCTGTCACAATTTAACAGATTTTAACTGTTAGAAACTTATAAACAATTTGATGTGTGAGTGCAGTATGGACCGATTGCACATATTGAGCTGAAAATTCCACCAAGACCCCCTGGTTATGCTTTTGTTGAGGTGAGTTTGAGCTGCCTTGGTTCTGATGGATTTCATTAGATCAGCCTGCTATGCGCCTTTTAAAGCTATTCTGACCTTTATATTGGCCAAAAACTATAACAGTTTGAAGAGGCTCGTGATGCTGAAGATGCTATTCGTGGTCGTGATGGCTATGATTTTGATGGGCACCGTCTGCGGGTCGGTCAAACTTATAGTTAGCGTATAGTTTACACAAGGTTACTAGTTTTTGCCTTGTTGGATGTTGAATCTATTACAATTGCTCATACTGGCAGGTTGAGCTTGCACATGGCGGGCGTGGTAACTCATCATCAAATGATCGTTATGGTGGTGGCGGTGGCG</genome_strand>
        <mrna_strand>GAACAATGAGTCGGTCGAGTAGGACACTTTATGTTGGCAATCTTCCTGGTGATGTCTCGTGAGCGTGAAGTGGAAGATCTCTTTTACAAG...........................................................................................................................................................................................................................................................................TATGGACCGATTGCACATATTGAGCTGAAAATTCCACCAAGACCCCCTGGTTATGCTTTTGTTGAG......................................................................................................TTTGAAGAGGCTCGTGATGCTGAAGATGCTATTCGTGGTCGTGATGGCTATGATTTTGATGGGCACCGTCTGCGG...............................................................................................GTTGAGCTTGCACATGGCGGGCGTGGTAACTCATCATCAAATGATCGTTATGGTGGTGGCGGTGGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E342653" ref_strand="+" ref_description="SGN-E342653 [cTOF-7-J1]">
      <seq>tcgatcttcccaggtatgttctctaatggaggttacgtaaatcgttttttttagctttaattgatataatcatcaatatatcgtcaaaatatagttcaattttttccttctttcccatttaccttgcttgtcaatgcaaaaatgtccgggttgtataaattaatgtcagtaaaattgtggaaagttgctttgtttattctttagatgatcaagatacgtttctgcgactgaaattggttttgcaactgaataattactagagttgaagcttttatcctttttcttttcccgttttgtccttagagagaatgtatgaactgttttaagtcgttgttgttttttgcttaactgcaagaggtgcttttttcttgtccttgtggtcaattaactgcaagaggtgcttgtttcttgtttttgtggacaattgactgcaagtgaatgtggttttgcctttcaggaacaatgagtcggtcgagtaggacactntatgttggcaatcttcctggtgatgttcgtgagcgtgaagtggaagatctcttttacaagtatggaccgattgcacatattgagctgaaaattccaccaagaccccctggttatgcttttgttgagtttgaagaggctcgtgatgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="68908" stop="67305"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68608" g_stop="68063" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="546" r_length="546" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68062" i_stop="67796" i_length="267">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67795" g_stop="67730" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="612" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67729" i_stop="67628" i_length="102">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67627" g_stop="67605" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="613" r_stop="635" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E342653" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342653" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68608" e_stop="68063"/>
          <exon e_start="67795" e_stop="67730"/>
          <exon e_start="67627" e_stop="67605"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGATCTTCCCAGGTATGTTCTCTAATGGAGGTTACGTAAATCGTTTTTTTTAGCTTTAATTGATATAATCATCAATATATCGTCAAAATATAGTTCAATTTTTTCCTTCTTTCCCATTTACCTTGCTTGTCAATGCAAAAATGTCCGGGTTGTATAAATTAATGTCAGTAAAATTGTGGAAAGTTGCTTTGTTTATTCTTTAGATGATCAAGATACGTTTCTGCGACTGAAATTGGTTTTGCAACTGAATAATTACTAGAGTTGAAGCTTTTATCCTTTTTCTTTTCCCGTTTTGTCCTTAGAGAGAATGTATGAACTGTTTTAAGTCGTTGTTGTTTTTTGCTTAACTGCAAGAGGTGCTTTTTTCTTGTCCTTGTGGTCAATTAACTGCAAGAGGTGCTTGTTTCTTGTTTTTGTGGACAATTGACTGCAAGTGAATGTGGTTTTGCCTTTCAGGAACAATGAGTCGGTCGAGTAGGACACTTTATGTTGGCAATCTTCCTGGTGATGTTCGTGAGCGTGAAGTGGAAGATCTCTTTTACAAGGTGCTTATACTCTAGATGGCTCCCTACATTCTTTGATATCATTTCATAATGCTTATAAACAAAAAGAAAAATGATTAGAAGTAAAATTATGTTTTTGAGTGAAATGGGTACAAATAGAGTGGTATGGATATAGGGAATTCATTATCGACAAACTCAAATTAAGGAGTATTTCTTTTGTAAGGCTTGTGCACATGTTTAATTGTTCTGTCACAATTTAACAGATTTTAACTGTTAGAAACTTATAAACAATTTGATGTGTGAGTGCAGTATGGACCGATTGCACATATTGAGCTGAAAATTCCACCAAGACCCCCTGGTTATGCTTTTGTTGAGGTGAGTTTGAGCTGCCTTGGTTCTGATGGATTTCATTAGATCAGCCTGCTATGCGCCTTTTAAAGCTATTCTGACCTTTATATTGGCCAAAAACTATAACAGTTTGAAGAGGCTCGTGATGCTGA</genome_strand>
        <mrna_strand>TCGATCTTCCCAGGTATGTTCTCTAATGGAGGTTACGTAAATCGTTTTTTTTAGCTTTAATTGATATAATCATCAATATATCGTCAAAATATAGTTCAATTTTTTCCTTCTTTCCCATTTACCTTGCTTGTCAATGCAAAAATGTCCGGGTTGTATAAATTAATGTCAGTAAAATTGTGGAAAGTTGCTTTGTTTATTCTTTAGATGATCAAGATACGTTTCTGCGACTGAAATTGGTTTTGCAACTGAATAATTACTAGAGTTGAAGCTTTTATCCTTTTTCTTTTCCCGTTTTGTCCTTAGAGAGAATGTATGAACTGTTTTAAGTCGTTGTTGTTTTTTGCTTAACTGCAAGAGGTGCTTTTTTCTTGTCCTTGTGGTCAATTAACTGCAAGAGGTGCTTGTTTCTTGTTTTTGTGGACAATTGACTGCAAGTGAATGTGGTTTTGCCTTTCAGGAACAATGAGTCGGTCGAGTAGGACACTNTATGTTGGCAATCTTCCTGGTGATGTTCGTGAGCGTGAAGTGGAAGATCTCTTTTACAAG...........................................................................................................................................................................................................................................................................TATGGACCGATTGCACATATTGAGCTGAAAATTCCACCAAGACCCCCTGGTTATGCTTTTGTTGAG......................................................................................................TTTGAAGAGGCTCGTGATGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E393076" ref_strand="+" ref_description="SGN-E393076 [TUS-37-J4]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaataaaaacagaatttatttttttttgtgtatatagcgagatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="+" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="68969" stop="69866"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69269" g_stop="69592" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="+" ref_id="SGN-E393076" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>324</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69269" e_stop="69592"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATGTTTTTCTCTCGCTTTATACAAAAACAGAAACACAATATATACATTGTTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCAATTGTATAATTCGTTGACCTTTTTCTCTGCAATATTTGAAGTGAAATGTTTGTAAATTGTATAATTGAGTGTATAACACGAAGATATATATTTTTGCATGTGTATATATAATTTTCTCTCGCTTTATACAAAACAGAAACAGAA-TTATACACTTCTATGTATAAAGCGAGAGAG</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAAAAACAGAATTTATTTTTTTTTGTGTATATAGCGAGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E393075" ref_strand="+" ref_description="SGN-E393075 [TUS-37-J2]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaggttttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="+" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="68969" stop="69866"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69269" g_stop="69561" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="293" r_length="293" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="+" ref_id="SGN-E393075" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>293</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69269" e_stop="69561"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATGTTTTTCTCTCGCTTTATACAAAAACAGAAACACAATATATACATTGTTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCAATTGTATAATTCGTTGACCTTTTTCTCTGCAATATTTGAAGTGAAATGTTTGTAAATTGTATAATTGAGTGTATAACACGAAGATATATATTTTTGCATGTGTATATATAATTTTCTCTCGCTTTATACAAAACAGAAACAGA</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392727" ref_strand="+" ref_description="SGN-E392727 [TUS-37-J5]">
      <seq>taatatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtcacgctttatacaaaatttaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="+" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="68969" stop="69721"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69269" g_stop="69421" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="+" ref_id="SGN-E392727" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>153</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69269" e_stop="69421"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATGTTTTTCTCTCGCTTTATACAAAAACAGAAACACAATATATACATTGTTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCAATT</genome_strand>
        <mrna_strand>TAATATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCACGCTTTATACAAAATTTAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E724454" ref_strand="+" ref_description="SGN-E724454 [FC24AF07]">
      <seq>ggatctacctctgacgtattttttttaaaaatagatggtatacataaaaagatcaaaataaaatagtccaaccccaaagaccattttgatcagtaaaaaatggcgagtggaagagcagtagaagcccttcgagcttacagatcagtgttgaaggccactcataaagccttcgccggagatactttcatgctccaacaatccgccgccgaggtcagaaagaaattcgaggagaatcgccacgtctcatcggaggctgatattcagaggctattggaggatgcaactgaggcctcttcgttcatatctactatgattatccaagccaaagctacaccttccggtgcttttgtggtaaagcctgagaaagaacatgctggagcaacgctcgagattccttctgaagagattcttaagaagtcagcttaagcatattcaaggaagctcagagcatttagactgctgtgttagcactttaatctttcataaactgtgagtttttcttgtgagtttctccacttggaattttctcagaggttctgctttctccaaggtcatcgcgtttcagtctttcctgtttttgttacatttaggccataattagtggatactgcatccatctatctacatctttctcctttgtgtagctacaatcaccttacaaagcaagcaggtgcagctttgcttaaacatggctattgtgataaatgattaaaaggttagttggaccaaatgtgccactaaatagagtttaaattttatttattgacggtgtaaaatatttgcacaagtgtaattttccttgctccaatagggcatgatccccttttgcaccaactaatgcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="+" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="70082" stop="74313"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70381" g_stop="70730" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="349" r_length="349" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70731" i_stop="73518" i_length="2788">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73519" g_stop="74013" g_length="495"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="844" r_length="495" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="+" ref_id="SGN-E724454" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>845</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E724454" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70381" e_stop="70730"/>
          <exon e_start="73519" e_stop="74013"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATCTACCTCTGAAGTATTTTTTTTAAAAAATAGATGGTATACATAAAAAGATCAAAATAAAATAGTCCAACCCCAAAGACCATTTTGATCAGTAAAAAATGGCGAGTGGAAGAGCAGTAGAAGCCCTTCGAGCTTACAGATCAGTGTTGAAGGCCACTCATAAAGCCTTCGCCGGAGATACTTTCATGCTCCAACAATCCGCCGCCGAGGTCAGAAAGAAATTCGAGGAGAATCGCCACGTCTCATCGGAGGCTGATATTCAGAGGCTATTGGAGGATGCAACTGAGGCCTCTTCGTTCATATCTACTATGATTATCCAAGCCAAAGCTACACCTTCCGGTGCTTTTGGTATAACCCCTCAAATCTCCATATTATTGCGTTTATTCAATGTTATTTGTAATTTTTTTGATATTATGTTTGCGCACACCAGGTGTTTGTTTTATTGCTTCGAAGACATTTCTTTTTCCTTCATGAAAATCAATTCAGATTGATGTGAAACTTTTTGTTGCTGCAAAATGAATGTTTCATGATGACATTTTTAACAAGATAAAAATTACATACTAGAGCTTAGTTCAATAACTTGATGTAATACTGGATGTGGTTATGTTATTTGTTAGAGGTCAGGTCAGTGTGTTCCTAGGTTGGTGCAATAGCTAACGACTTTCCCAAACCTTTGAACTGCAAAATTGTTAAAGAACAAGTTCAAACAAATAGTTATTGCATTCAGCATCTTACTTTGAATGGTGCTATCTTTTTGTTTCATTTTTTTTGTGTGTGGTTTTTTAGCTTAGACCAAATACTAACTATATTGGGGACTTGTGACTTGAATTACCTTGATAACTGCCATAATAACATTTAGTGAAAGAATGTTGCTGTTGAGCTGTTGCTGGACCAGCTTGAGTGAAATCTCCGATCTTTGTAACGGTGTCTAGTCTATAATGCGTAAACATTGAGTTGGGCAGGTACTCTCTCTGTTAGTAGTGCCTACTACCTATGTACTCTCTCCGAAGTTTTAGTGCCTGTGCAGTCTCTGATGCTTTTAAATTTTTAGCAGAGCACCAGTTATTTGGCACCAAGACACTTAACATTTAGAGTATGCTAATTTTATTTAAGATCTTCTCTGCATAGCACCTTCAAAAGGTATTTCATTAGATATATCCACTAGTAAATACATGATATTGGAAGTGTGTTGTCTACTTCTCACTGAGACACATCTCTTTGAAATTGCCTGATTGGTGATTGACAATTGGCAGTTACAAACTTCCAAATATTACTTTTGTCAACTTGTGGTTAAGTCAAAATACCATAAATTTGGAGGCTCTTATTCTAAAGAGCCGTGGAAACTATTCAATCTCATAAATTTAAAACTCAATCATTGTTGATTACCCTTGCAACATCTAACATCTTCTTCACTGATCAAAAAACAATAAAACTCATTCATCATGTCTTGTGAGTGTTGTTGCCTAAATCCATTAGGAATCTAGTCACGTCAAGTAACATACTGAAGAGTAGTGATTCATTCACTTTATTTCCGTCTACCATGCAAATTTCTCAAGTTTGCAACAGTTATCAGCTTACAATAATTGAAAGTATGTTCTGTAGAGAGAATGATCAAACCGGTCCTTAATCTGTAGGGGTTGGACTGACAGAAATAGTCCTTAGTGTATATTAAAATATGTATAGTTTTGGTCTCATACCCTAAAACTATGGTTCCTCCTCATATTCTGTTTAAACAAATGGATTTCAAAGCACAAGATTCCAAGTTCCAATATCAAAAATTGAAGCTCAGACACTACATTTTTCATGGACAAAGTTCAATTTTCATGGCTGCAAAATCACTGTTTGTATGCATAGAGAGAGGAACAAATGCAGGTCATCCGGGGATTTGCTCAGTGCCCAAGTTTGTTACTTGAAGAAGATTGAAAGAAACTGATCGGAAGGTTATCATATTTCCCAAGGCTGATTCTGGATAACCATCCTCATCCTGTTGTTGTCCTACTTTGGAACTGAAGGTTCCTCATTCCAAATTTTCTGCTCCCATGTTGAGCATTTTTTCTCCTATTTGATGGCTCGAAAGTTTCTCTAGCTTTCATCATCATTCCCCCTTCCTGTTGATTCTACGTAGTAGGGTTTAATCAGTTATTCACAATTGTCAAATTGGAAGTGCACAGGAGACAAATTTCACCTACAGATGCATTTTTCTTTTTCATTCTAGTTCTGGATTTTTCCTCACCCAATTATTCTTGTATTCATGCATACAAAAAATTATCTTCCCCATTCGGTTCTTGGTATTTGGATATACTATGTTTGTGAAAATCACTAGGAAGTTACTTTAACGGAGGTTGGTTCTTGTTCAGACATAATTCAACTTTAACAGTTAGCTTTCAATATTTGTACTATTATAATTGTCCTCCTTTTCAGATGACTTATTTGATTGCTGATAAATGCTAAATATACAGCATACAGACATTATTAAGTACTTCACCATGCCTTCGTTGTGTTATTCAAAATTGTGCAATCAAATGGTCTATGTAAAAAATTAAAGTAAAAGAAGCTATATTTTTGCCAAGCTTAGTGAAATGTAGAAGAGCGAGGGGTGCATGGGAGGATGCAGTTCAAAGGTAACGGATTCACCTGAATCTGCTACTTCTCTTAAGGTTAAACCCATAAAGGAAAGATCCTACATCCACCTCTGGAGGGGTGATGCTTTAAACAATGTGTGAGGTGTCTAGAGGAAGAAGAACATAAGGAAATCAGAAAAGTGAAGGAAGCACTGGCATACACAAGTAAAGAAAGAAGAAATAGACTTTGTGGAACTCACGAATCACAATAAAGCTAGAAGTACTACTATCAAATTGAATTACACCATTAATTTTAACAGTATTTTTGTTTTGTACCATTAGTTTTTCGACATGAGATAAAAGATGTCCAGCTTTGACATACATTAAGGACCATTTCCTTTAAGTGGGGTATATATGATTGACCAAAACTGTTAACCCCCTAACATTAAAGGATCATTTTGATAGTTTTCTCCTGTTCTTTATCTGCTAAGTTTCCTGATGCTCTTTCGGTCTTTCCTTGCATTGATTCAATTCTGCTGCCTTTTTGACAAATATTTGAATGTTATTTGCTGCAGTGGTAAAGCCTGAGAAAGAACATGCTGGAGCAACGCTCGAGATTCCTTCTGAAGAGATTCTTAAGAAGTCAGCTTAAGCATATTCAAGGAAGCTCAGAGCATTTAGACTGCTGTGTTAGCACTTTAATCTTTCATAAACTGTGAGTTTTTCTTGTGAGTTTCTCCACTTGGAATTTTCTCAGAGGTTCTGCTTTCTCCAAGGTCATCGCGTTTCAGTCTTTCCTGTTTTTGTTACATTTAGGCCATAATTAGTGGATACTGCATCCATCTATCTACATCTTTCTCCTTTGTGTAGCTACAATCACCTTACAAAGCAAGCAGGTGCAGCTTTGCTTAAACATGGCTATTGTGATAAATGATTAAAAGGTTAGTTGGACCAAATGTGCCACTAAATAGAGTTTAAATTTTATTTATTGACGGTGTAAAATATTTGCACAAGTGTAATTTTCCTTGCTCCAATAGGGCATGATCCCCTTTTGCACCAACTAATGCACA</genome_strand>
        <mrna_strand>GGATCTACCTCTGACGTATTTTTTTT-AAAAATAGATGGTATACATAAAAAGATCAAAATAAAATAGTCCAACCCCAAAGACCATTTTGATCAGTAAAAAATGGCGAGTGGAAGAGCAGTAGAAGCCCTTCGAGCTTACAGATCAGTGTTGAAGGCCACTCATAAAGCCTTCGCCGGAGATACTTTCATGCTCCAACAATCCGCCGCCGAGGTCAGAAAGAAATTCGAGGAGAATCGCCACGTCTCATCGGAGGCTGATATTCAGAGGCTATTGGAGGATGCAACTGAGGCCTCTTCGTTCATATCTACTATGATTATCCAAGCCAAAGCTACACCTTCCGGTGCTTTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTAAAGCCTGAGAAAGAACATGCTGGAGCAACGCTCGAGATTCCTTCTGAAGAGATTCTTAAGAAGTCAGCTTAAGCATATTCAAGGAAGCTCAGAGCATTTAGACTGCTGTGTTAGCACTTTAATCTTTCATAAACTGTGAGTTTTTCTTGTGAGTTTCTCCACTTGGAATTTTCTCAGAGGTTCTGCTTTCTCCAAGGTCATCGCGTTTCAGTCTTTCCTGTTTTTGTTACATTTAGGCCATAATTAGTGGATACTGCATCCATCTATCTACATCTTTCTCCTTTGTGTAGCTACAATCACCTTACAAAGCAAGCAGGTGCAGCTTTGCTTAAACATGGCTATTGTGATAAATGATTAAAAGGTTAGTTGGACCAAATGTGCCACTAAATAGAGTTTAAATTTTATTTATTGACGGTGTAAAATATTTGCACAAGTGTAATTTTCCTTGCTCCAATAGGGCATGATCCCCTTTTGCACCAACTAATGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E247174" ref_strand="+" ref_description="SGN-E247174 [cLEF-46-B16]">
      <seq>ttttgatcagtaaaaaatggcgagtggaagagcagtagaagcccttcgagcttacagatcagtgttgaaggccactcataaagccttcgccggagatactttcatgctccaacaatccgccgccgaggtcagaaagaaattcgaggagaatcgccacgtctcatcggaggctgatattcagaggctattggaggatgcaactgaggcctcttcgttcatatctactatgattatccaagccaaagctacaccttccggtgcttttgtggtaaagcctgagaaagaacatgctggagcaacgctcgagattccttctgaagagattcttaagaagtcagcttaagcatattcaaggaagctcagagcatttagactgctgtgttagcactttaatctttcataaactgtgagtttttcttgtgagtttctccacttggaattttctcagaggttctgctttctccaaggtcatcgcgtttcagtctttcctgtttttgttacatttaggccataattagtggatactgcatccatctatctacatctttctcctttgtgtagctacaatcaccttacaaagcaagcaagtgcagctttgcttaaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="+" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="70165" stop="74159"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70465" g_stop="70730" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="266" r_length="266" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70731" i_stop="73518" i_length="2788">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73519" g_stop="73859" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="607" r_length="341" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="+" ref_id="SGN-E247174" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247174" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70465" e_stop="70730"/>
          <exon e_start="73519" e_stop="73859"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGATCAGTAAAAAATGGCGAGTGGAAGAGCAGTAGAAGCCCTTCGAGCTTACAGATCAGTGTTGAAGGCCACTCATAAAGCCTTCGCCGGAGATACTTTCATGCTCCAACAATCCGCCGCCGAGGTCAGAAAGAAATTCGAGGAGAATCGCCACGTCTCATCGGAGGCTGATATTCAGAGGCTATTGGAGGATGCAACTGAGGCCTCTTCGTTCATATCTACTATGATTATCCAAGCCAAAGCTACACCTTCCGGTGCTTTTGGTATAACCCCTCAAATCTCCATATTATTGCGTTTATTCAATGTTATTTGTAATTTTTTTGATATTATGTTTGCGCACACCAGGTGTTTGTTTTATTGCTTCGAAGACATTTCTTTTTCCTTCATGAAAATCAATTCAGATTGATGTGAAACTTTTTGTTGCTGCAAAATGAATGTTTCATGATGACATTTTTAACAAGATAAAAATTACATACTAGAGCTTAGTTCAATAACTTGATGTAATACTGGATGTGGTTATGTTATTTGTTAGAGGTCAGGTCAGTGTGTTCCTAGGTTGGTGCAATAGCTAACGACTTTCCCAAACCTTTGAACTGCAAAATTGTTAAAGAACAAGTTCAAACAAATAGTTATTGCATTCAGCATCTTACTTTGAATGGTGCTATCTTTTTGTTTCATTTTTTTTGTGTGTGGTTTTTTAGCTTAGACCAAATACTAACTATATTGGGGACTTGTGACTTGAATTACCTTGATAACTGCCATAATAACATTTAGTGAAAGAATGTTGCTGTTGAGCTGTTGCTGGACCAGCTTGAGTGAAATCTCCGATCTTTGTAACGGTGTCTAGTCTATAATGCGTAAACATTGAGTTGGGCAGGTACTCTCTCTGTTAGTAGTGCCTACTACCTATGTACTCTCTCCGAAGTTTTAGTGCCTGTGCAGTCTCTGATGCTTTTAAATTTTTAGCAGAGCACCAGTTATTTGGCACCAAGACACTTAACATTTAGAGTATGCTAATTTTATTTAAGATCTTCTCTGCATAGCACCTTCAAAAGGTATTTCATTAGATATATCCACTAGTAAATACATGATATTGGAAGTGTGTTGTCTACTTCTCACTGAGACACATCTCTTTGAAATTGCCTGATTGGTGATTGACAATTGGCAGTTACAAACTTCCAAATATTACTTTTGTCAACTTGTGGTTAAGTCAAAATACCATAAATTTGGAGGCTCTTATTCTAAAGAGCCGTGGAAACTATTCAATCTCATAAATTTAAAACTCAATCATTGTTGATTACCCTTGCAACATCTAACATCTTCTTCACTGATCAAAAAACAATAAAACTCATTCATCATGTCTTGTGAGTGTTGTTGCCTAAATCCATTAGGAATCTAGTCACGTCAAGTAACATACTGAAGAGTAGTGATTCATTCACTTTATTTCCGTCTACCATGCAAATTTCTCAAGTTTGCAACAGTTATCAGCTTACAATAATTGAAAGTATGTTCTGTAGAGAGAATGATCAAACCGGTCCTTAATCTGTAGGGGTTGGACTGACAGAAATAGTCCTTAGTGTATATTAAAATATGTATAGTTTTGGTCTCATACCCTAAAACTATGGTTCCTCCTCATATTCTGTTTAAACAAATGGATTTCAAAGCACAAGATTCCAAGTTCCAATATCAAAAATTGAAGCTCAGACACTACATTTTTCATGGACAAAGTTCAATTTTCATGGCTGCAAAATCACTGTTTGTATGCATAGAGAGAGGAACAAATGCAGGTCATCCGGGGATTTGCTCAGTGCCCAAGTTTGTTACTTGAAGAAGATTGAAAGAAACTGATCGGAAGGTTATCATATTTCCCAAGGCTGATTCTGGATAACCATCCTCATCCTGTTGTTGTCCTACTTTGGAACTGAAGGTTCCTCATTCCAAATTTTCTGCTCCCATGTTGAGCATTTTTTCTCCTATTTGATGGCTCGAAAGTTTCTCTAGCTTTCATCATCATTCCCCCTTCCTGTTGATTCTACGTAGTAGGGTTTAATCAGTTATTCACAATTGTCAAATTGGAAGTGCACAGGAGACAAATTTCACCTACAGATGCATTTTTCTTTTTCATTCTAGTTCTGGATTTTTCCTCACCCAATTATTCTTGTATTCATGCATACAAAAAATTATCTTCCCCATTCGGTTCTTGGTATTTGGATATACTATGTTTGTGAAAATCACTAGGAAGTTACTTTAACGGAGGTTGGTTCTTGTTCAGACATAATTCAACTTTAACAGTTAGCTTTCAATATTTGTACTATTATAATTGTCCTCCTTTTCAGATGACTTATTTGATTGCTGATAAATGCTAAATATACAGCATACAGACATTATTAAGTACTTCACCATGCCTTCGTTGTGTTATTCAAAATTGTGCAATCAAATGGTCTATGTAAAAAATTAAAGTAAAAGAAGCTATATTTTTGCCAAGCTTAGTGAAATGTAGAAGAGCGAGGGGTGCATGGGAGGATGCAGTTCAAAGGTAACGGATTCACCTGAATCTGCTACTTCTCTTAAGGTTAAACCCATAAAGGAAAGATCCTACATCCACCTCTGGAGGGGTGATGCTTTAAACAATGTGTGAGGTGTCTAGAGGAAGAAGAACATAAGGAAATCAGAAAAGTGAAGGAAGCACTGGCATACACAAGTAAAGAAAGAAGAAATAGACTTTGTGGAACTCACGAATCACAATAAAGCTAGAAGTACTACTATCAAATTGAATTACACCATTAATTTTAACAGTATTTTTGTTTTGTACCATTAGTTTTTCGACATGAGATAAAAGATGTCCAGCTTTGACATACATTAAGGACCATTTCCTTTAAGTGGGGTATATATGATTGACCAAAACTGTTAACCCCCTAACATTAAAGGATCATTTTGATAGTTTTCTCCTGTTCTTTATCTGCTAAGTTTCCTGATGCTCTTTCGGTCTTTCCTTGCATTGATTCAATTCTGCTGCCTTTTTGACAAATATTTGAATGTTATTTGCTGCAGTGGTAAAGCCTGAGAAAGAACATGCTGGAGCAACGCTCGAGATTCCTTCTGAAGAGATTCTTAAGAAGTCAGCTTAAGCATATTCAAGGAAGCTCAGAGCATTTAGACTGCTGTGTTAGCACTTTAATCTTTCATAAACTGTGAGTTTTTCTTGTGAGTTTCTCCACTTGGAATTTTCTCAGAGGTTCTGCTTTCTCCAAGGTCATCGCGTTTCAGTCTTTCCTGTTTTTGTTACATTTAGGCCATAATTAGTGGATACTGCATCCATCTATCTACATCTTTCTCCTTTGTGTAGCTACAATCACCTTACAAAGCAAGCAGGTGCAGCTTTGCTTAAACAT</genome_strand>
        <mrna_strand>TTTTGATCAGTAAAAAATGGCGAGTGGAAGAGCAGTAGAAGCCCTTCGAGCTTACAGATCAGTGTTGAAGGCCACTCATAAAGCCTTCGCCGGAGATACTTTCATGCTCCAACAATCCGCCGCCGAGGTCAGAAAGAAATTCGAGGAGAATCGCCACGTCTCATCGGAGGCTGATATTCAGAGGCTATTGGAGGATGCAACTGAGGCCTCTTCGTTCATATCTACTATGATTATCCAAGCCAAAGCTACACCTTCCGGTGCTTTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTAAAGCCTGAGAAAGAACATGCTGGAGCAACGCTCGAGATTCCTTCTGAAGAGATTCTTAAGAAGTCAGCTTAAGCATATTCAAGGAAGCTCAGAGCATTTAGACTGCTGTGTTAGCACTTTAATCTTTCATAAACTGTGAGTTTTTCTTGTGAGTTTCTCCACTTGGAATTTTCTCAGAGGTTCTGCTTTCTCCAAGGTCATCGCGTTTCAGTCTTTCCTGTTTTTGTTACATTTAGGCCATAATTAGTGGATACTGCATCCATCTATCTACATCTTTCTCCTTTGTGTAGCTACAATCACCTTACAAAGCAAGCAAGTGCAGCTTTGCTTAAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E461011" ref_strand="+" ref_description="SGN-E461011 [cPRO-34-C23]">
      <seq>ggcgagcgggagagcagtagaagcccttcgagcttacagatcagtgttgaaggccactcacaaagccttcgccggagatactttcatgctccaacaatccgccgccgaggtcagaaagaaattcgaggagaatcgccacgtctcatcggaggctgatattcagaggctattggaggatgcaactgaggcctcttcgttcatatctactatgattatccaagccaaagctacaccttccggtgcttttgtggtgaagcctgagaaagaacatgctggagcaacgctcgagattccttctgaagagattcttaagaagtctgcttgagcatattcaaggaagcttagagcatttagactgctgtgttggcacttttatctttcataaaccgtgagtttgtcttttgagtttctccacttgaaattttctcggagattctgctttctccaaggtcatggcgtttcggtctttcctatttttgttacatttaggccataattagtggatattgcatccatctatctctttctctctcctttgtgtcgccacaaccacctagaaagcaagcagatgcagctttgcttaaacatggctactgtgatgaatgattttaaaaggttagttggaccaagtgtgccactaaatacagttttaagttttatttgctgacagtgtaaaatatttgcacaatgagtgtaatatgccttgctccnatagggtatgatcccctttttgcacaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="+" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="70183" stop="74265"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70483" g_stop="70730" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70731" i_stop="73518" i_length="2788">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73519" g_stop="74008" g_length="490"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="744" r_length="496" r_score="0.886"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="+" ref_id="SGN-E461011" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>738</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E461011" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70483" e_stop="70730"/>
          <exon e_start="73519" e_stop="74008"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGAGTGGAAGAGCAGTAGAAGCCCTTCGAGCTTACAGATCAGTGTTGAAGGCCACTCATAAAGCCTTCGCCGGAGATACTTTCATGCTCCAACAATCCGCCGCCGAGGTCAGAAAGAAATTCGAGGAGAATCGCCACGTCTCATCGGAGGCTGATATTCAGAGGCTATTGGAGGATGCAACTGAGGCCTCTTCGTTCATATCTACTATGATTATCCAAGCCAAAGCTACACCTTCCGGTGCTTTTGGTATAACCCCTCAAATCTCCATATTATTGCGTTTATTCAATGTTATTTGTAATTTTTTTGATATTATGTTTGCGCACACCAGGTGTTTGTTTTATTGCTTCGAAGACATTTCTTTTTCCTTCATGAAAATCAATTCAGATTGATGTGAAACTTTTTGTTGCTGCAAAATGAATGTTTCATGATGACATTTTTAACAAGATAAAAATTACATACTAGAGCTTAGTTCAATAACTTGATGTAATACTGGATGTGGTTATGTTATTTGTTAGAGGTCAGGTCAGTGTGTTCCTAGGTTGGTGCAATAGCTAACGACTTTCCCAAACCTTTGAACTGCAAAATTGTTAAAGAACAAGTTCAAACAAATAGTTATTGCATTCAGCATCTTACTTTGAATGGTGCTATCTTTTTGTTTCATTTTTTTTGTGTGTGGTTTTTTAGCTTAGACCAAATACTAACTATATTGGGGACTTGTGACTTGAATTACCTTGATAACTGCCATAATAACATTTAGTGAAAGAATGTTGCTGTTGAGCTGTTGCTGGACCAGCTTGAGTGAAATCTCCGATCTTTGTAACGGTGTCTAGTCTATAATGCGTAAACATTGAGTTGGGCAGGTACTCTCTCTGTTAGTAGTGCCTACTACCTATGTACTCTCTCCGAAGTTTTAGTGCCTGTGCAGTCTCTGATGCTTTTAAATTTTTAGCAGAGCACCAGTTATTTGGCACCAAGACACTTAACATTTAGAGTATGCTAATTTTATTTAAGATCTTCTCTGCATAGCACCTTCAAAAGGTATTTCATTAGATATATCCACTAGTAAATACATGATATTGGAAGTGTGTTGTCTACTTCTCACTGAGACACATCTCTTTGAAATTGCCTGATTGGTGATTGACAATTGGCAGTTACAAACTTCCAAATATTACTTTTGTCAACTTGTGGTTAAGTCAAAATACCATAAATTTGGAGGCTCTTATTCTAAAGAGCCGTGGAAACTATTCAATCTCATAAATTTAAAACTCAATCATTGTTGATTACCCTTGCAACATCTAACATCTTCTTCACTGATCAAAAAACAATAAAACTCATTCATCATGTCTTGTGAGTGTTGTTGCCTAAATCCATTAGGAATCTAGTCACGTCAAGTAACATACTGAAGAGTAGTGATTCATTCACTTTATTTCCGTCTACCATGCAAATTTCTCAAGTTTGCAACAGTTATCAGCTTACAATAATTGAAAGTATGTTCTGTAGAGAGAATGATCAAACCGGTCCTTAATCTGTAGGGGTTGGACTGACAGAAATAGTCCTTAGTGTATATTAAAATATGTATAGTTTTGGTCTCATACCCTAAAACTATGGTTCCTCCTCATATTCTGTTTAAACAAATGGATTTCAAAGCACAAGATTCCAAGTTCCAATATCAAAAATTGAAGCTCAGACACTACATTTTTCATGGACAAAGTTCAATTTTCATGGCTGCAAAATCACTGTTTGTATGCATAGAGAGAGGAACAAATGCAGGTCATCCGGGGATTTGCTCAGTGCCCAAGTTTGTTACTTGAAGAAGATTGAAAGAAACTGATCGGAAGGTTATCATATTTCCCAAGGCTGATTCTGGATAACCATCCTCATCCTGTTGTTGTCCTACTTTGGAACTGAAGGTTCCTCATTCCAAATTTTCTGCTCCCATGTTGAGCATTTTTTCTCCTATTTGATGGCTCGAAAGTTTCTCTAGCTTTCATCATCATTCCCCCTTCCTGTTGATTCTACGTAGTAGGGTTTAATCAGTTATTCACAATTGTCAAATTGGAAGTGCACAGGAGACAAATTTCACCTACAGATGCATTTTTCTTTTTCATTCTAGTTCTGGATTTTTCCTCACCCAATTATTCTTGTATTCATGCATACAAAAAATTATCTTCCCCATTCGGTTCTTGGTATTTGGATATACTATGTTTGTGAAAATCACTAGGAAGTTACTTTAACGGAGGTTGGTTCTTGTTCAGACATAATTCAACTTTAACAGTTAGCTTTCAATATTTGTACTATTATAATTGTCCTCCTTTTCAGATGACTTATTTGATTGCTGATAAATGCTAAATATACAGCATACAGACATTATTAAGTACTTCACCATGCCTTCGTTGTGTTATTCAAAATTGTGCAATCAAATGGTCTATGTAAAAAATTAAAGTAAAAGAAGCTATATTTTTGCCAAGCTTAGTGAAATGTAGAAGAGCGAGGGGTGCATGGGAGGATGCAGTTCAAAGGTAACGGATTCACCTGAATCTGCTACTTCTCTTAAGGTTAAACCCATAAAGGAAAGATCCTACATCCACCTCTGGAGGGGTGATGCTTTAAACAATGTGTGAGGTGTCTAGAGGAAGAAGAACATAAGGAAATCAGAAAAGTGAAGGAAGCACTGGCATACACAAGTAAAGAAAGAAGAAATAGACTTTGTGGAACTCACGAATCACAATAAAGCTAGAAGTACTACTATCAAATTGAATTACACCATTAATTTTAACAGTATTTTTGTTTTGTACCATTAGTTTTTCGACATGAGATAAAAGATGTCCAGCTTTGACATACATTAAGGACCATTTCCTTTAAGTGGGGTATATATGATTGACCAAAACTGTTAACCCCCTAACATTAAAGGATCATTTTGATAGTTTTCTCCTGTTCTTTATCTGCTAAGTTTCCTGATGCTCTTTCGGTCTTTCCTTGCATTGATTCAATTCTGCTGCCTTTTTGACAAATATTTGAATGTTATTTGCTGCAGTGGTAAAGCCTGAGAAAGAACATGCTGGAGCAACGCTCGAGATTCCTTCTGAAGAGATTCTTAAGAAGTCAGCTTAAGCATATTCAAGGAAGCTCAGAGCATTTAGACTGCTGTGTTAGCACTTTAATCTTTCATAAACTGTGAGTTTTTCTTGTGAGTTTCTCCACTTGGAATTTTCTCAGAGGTTCTGCTTTCTCCAAGGTCATCGCGTTTCAGTCTTTCCTGTTTTTGTTACATTTAGGCCATAATTAGTGGATACTGCATCCATCTATCTACATCTTTCTCCTTTGTGTAGCTACAATCACCTTACAAAGCAAGCAGGTGCAGCTTTGCTTAAACATGGCTATTGTGATAAATGA--TTAAAAGGTTAGTTGGACCAAATGTGCCACTAAATAGAG-TTTAAATTTTATTTATTGACGGTGTAAAATATTTGCAC-A--AGTGTAATTTTCCTTGCTCCAATAGGGCATGATCCCC-TTTTGCACCAACTAAT</genome_strand>
        <mrna_strand>GGCGAGCGGGAGAGCAGTAGAAGCCCTTCGAGCTTACAGATCAGTGTTGAAGGCCACTCACAAAGCCTTCGCCGGAGATACTTTCATGCTCCAACAATCCGCCGCCGAGGTCAGAAAGAAATTCGAGGAGAATCGCCACGTCTCATCGGAGGCTGATATTCAGAGGCTATTGGAGGATGCAACTGAGGCCTCTTCGTTCATATCTACTATGATTATCCAAGCCAAAGCTACACCTTCCGGTGCTTTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGAAGCCTGAGAAAGAACATGCTGGAGCAACGCTCGAGATTCCTTCTGAAGAGATTCTTAAGAAGTCTGCTTGAGCATATTCAAGGAAGCTTAGAGCATTTAGACTGCTGTGTTGGCACTTTTATCTTTCATAAACCGTGAGTTTGTCTTTTGAGTTTCTCCACTTGAAATTTTCTCGGAGATTCTGCTTTCTCCAAGGTCATGGCGTTTCGGTCTTTCCTATTTTTGTTACATTTAGGCCATAATTAGTGGATATTGCATCCATCTATCTCTTTCTCTCTCCTTTGTGTCGCCACAACCACC-TAGAAAGCAAGCAGATGCAGCTTTGCTTAAACATGGCTACTGTGATGAATGATTTTAAAAGGTTAGTTGGACCAAGTGTGCCACTAAATACAGTTTTAAGTTTTATTTGCTGACAGTGTAAAATATTTGCACAATGAGTGTAATATGCCTTGCTCCNATAGGGTATGATCCCCTTTTTGCACAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E575982" ref_strand="+" ref_description="SGN-E575982 [35690]">
      <seq>ggcgagcgggagagcagtagaagcccttcgagcttacagatcagtgttgaaggccactcacaaagccttcgccggagatactttcatgctccaacaatccgccgccgaggtcagaaagaaattcgaggagaatcgccacgtctcatcggaggctgatattcagaggctattggaggatgcaactgaggcctcttcgttcatatctactatgattatccaagccaaagctacaccttccggtgcttttgtggtgaagcctgagaaagaacatgctggagcaacgcttgagattccttctgaagagattcttaagaagtctgcttgagcatattcaaggaaactcagagcatttagactgctgtgctagcacttttatctttcattaaccctgagtttgtcttttgagtttctccacttggaattttctcggagattctgctttctccaaggtcatgacatttcagtctttccttttattgttacatttaggccataattagtggatattgcatccatctatctataactctctcctttgtgtcgctacaatcaccttagaaagcaagcagatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="+" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="70183" stop="74144"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70483" g_stop="70730" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70731" i_stop="73518" i_length="2788">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73519" g_stop="73844" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="574" r_length="326" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="+" ref_id="SGN-E575982" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E575982" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70483" e_stop="70730"/>
          <exon e_start="73519" e_stop="73844"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGAGTGGAAGAGCAGTAGAAGCCCTTCGAGCTTACAGATCAGTGTTGAAGGCCACTCATAAAGCCTTCGCCGGAGATACTTTCATGCTCCAACAATCCGCCGCCGAGGTCAGAAAGAAATTCGAGGAGAATCGCCACGTCTCATCGGAGGCTGATATTCAGAGGCTATTGGAGGATGCAACTGAGGCCTCTTCGTTCATATCTACTATGATTATCCAAGCCAAAGCTACACCTTCCGGTGCTTTTGGTATAACCCCTCAAATCTCCATATTATTGCGTTTATTCAATGTTATTTGTAATTTTTTTGATATTATGTTTGCGCACACCAGGTGTTTGTTTTATTGCTTCGAAGACATTTCTTTTTCCTTCATGAAAATCAATTCAGATTGATGTGAAACTTTTTGTTGCTGCAAAATGAATGTTTCATGATGACATTTTTAACAAGATAAAAATTACATACTAGAGCTTAGTTCAATAACTTGATGTAATACTGGATGTGGTTATGTTATTTGTTAGAGGTCAGGTCAGTGTGTTCCTAGGTTGGTGCAATAGCTAACGACTTTCCCAAACCTTTGAACTGCAAAATTGTTAAAGAACAAGTTCAAACAAATAGTTATTGCATTCAGCATCTTACTTTGAATGGTGCTATCTTTTTGTTTCATTTTTTTTGTGTGTGGTTTTTTAGCTTAGACCAAATACTAACTATATTGGGGACTTGTGACTTGAATTACCTTGATAACTGCCATAATAACATTTAGTGAAAGAATGTTGCTGTTGAGCTGTTGCTGGACCAGCTTGAGTGAAATCTCCGATCTTTGTAACGGTGTCTAGTCTATAATGCGTAAACATTGAGTTGGGCAGGTACTCTCTCTGTTAGTAGTGCCTACTACCTATGTACTCTCTCCGAAGTTTTAGTGCCTGTGCAGTCTCTGATGCTTTTAAATTTTTAGCAGAGCACCAGTTATTTGGCACCAAGACACTTAACATTTAGAGTATGCTAATTTTATTTAAGATCTTCTCTGCATAGCACCTTCAAAAGGTATTTCATTAGATATATCCACTAGTAAATACATGATATTGGAAGTGTGTTGTCTACTTCTCACTGAGACACATCTCTTTGAAATTGCCTGATTGGTGATTGACAATTGGCAGTTACAAACTTCCAAATATTACTTTTGTCAACTTGTGGTTAAGTCAAAATACCATAAATTTGGAGGCTCTTATTCTAAAGAGCCGTGGAAACTATTCAATCTCATAAATTTAAAACTCAATCATTGTTGATTACCCTTGCAACATCTAACATCTTCTTCACTGATCAAAAAACAATAAAACTCATTCATCATGTCTTGTGAGTGTTGTTGCCTAAATCCATTAGGAATCTAGTCACGTCAAGTAACATACTGAAGAGTAGTGATTCATTCACTTTATTTCCGTCTACCATGCAAATTTCTCAAGTTTGCAACAGTTATCAGCTTACAATAATTGAAAGTATGTTCTGTAGAGAGAATGATCAAACCGGTCCTTAATCTGTAGGGGTTGGACTGACAGAAATAGTCCTTAGTGTATATTAAAATATGTATAGTTTTGGTCTCATACCCTAAAACTATGGTTCCTCCTCATATTCTGTTTAAACAAATGGATTTCAAAGCACAAGATTCCAAGTTCCAATATCAAAAATTGAAGCTCAGACACTACATTTTTCATGGACAAAGTTCAATTTTCATGGCTGCAAAATCACTGTTTGTATGCATAGAGAGAGGAACAAATGCAGGTCATCCGGGGATTTGCTCAGTGCCCAAGTTTGTTACTTGAAGAAGATTGAAAGAAACTGATCGGAAGGTTATCATATTTCCCAAGGCTGATTCTGGATAACCATCCTCATCCTGTTGTTGTCCTACTTTGGAACTGAAGGTTCCTCATTCCAAATTTTCTGCTCCCATGTTGAGCATTTTTTCTCCTATTTGATGGCTCGAAAGTTTCTCTAGCTTTCATCATCATTCCCCCTTCCTGTTGATTCTACGTAGTAGGGTTTAATCAGTTATTCACAATTGTCAAATTGGAAGTGCACAGGAGACAAATTTCACCTACAGATGCATTTTTCTTTTTCATTCTAGTTCTGGATTTTTCCTCACCCAATTATTCTTGTATTCATGCATACAAAAAATTATCTTCCCCATTCGGTTCTTGGTATTTGGATATACTATGTTTGTGAAAATCACTAGGAAGTTACTTTAACGGAGGTTGGTTCTTGTTCAGACATAATTCAACTTTAACAGTTAGCTTTCAATATTTGTACTATTATAATTGTCCTCCTTTTCAGATGACTTATTTGATTGCTGATAAATGCTAAATATACAGCATACAGACATTATTAAGTACTTCACCATGCCTTCGTTGTGTTATTCAAAATTGTGCAATCAAATGGTCTATGTAAAAAATTAAAGTAAAAGAAGCTATATTTTTGCCAAGCTTAGTGAAATGTAGAAGAGCGAGGGGTGCATGGGAGGATGCAGTTCAAAGGTAACGGATTCACCTGAATCTGCTACTTCTCTTAAGGTTAAACCCATAAAGGAAAGATCCTACATCCACCTCTGGAGGGGTGATGCTTTAAACAATGTGTGAGGTGTCTAGAGGAAGAAGAACATAAGGAAATCAGAAAAGTGAAGGAAGCACTGGCATACACAAGTAAAGAAAGAAGAAATAGACTTTGTGGAACTCACGAATCACAATAAAGCTAGAAGTACTACTATCAAATTGAATTACACCATTAATTTTAACAGTATTTTTGTTTTGTACCATTAGTTTTTCGACATGAGATAAAAGATGTCCAGCTTTGACATACATTAAGGACCATTTCCTTTAAGTGGGGTATATATGATTGACCAAAACTGTTAACCCCCTAACATTAAAGGATCATTTTGATAGTTTTCTCCTGTTCTTTATCTGCTAAGTTTCCTGATGCTCTTTCGGTCTTTCCTTGCATTGATTCAATTCTGCTGCCTTTTTGACAAATATTTGAATGTTATTTGCTGCAGTGGTAAAGCCTGAGAAAGAACATGCTGGAGCAACGCTCGAGATTCCTTCTGAAGAGATTCTTAAGAAGTCAGCTTAAGCATATTCAAGGAAGCTCAGAGCATTTAGACTGCTGTGTTAGCACTTTAATCTTTCATAAACTGTGAGTTTTTCTTGTGAGTTTCTCCACTTGGAATTTTCTCAGAGGTTCTGCTTTCTCCAAGGTCATCGCGTTTCAGTCTTTCCTGTTTTTGTTACATTTAGGCCATAATTAGTGGATACTGCATCCATCTATCTACATCTTTCTCCTTTGTGTAGCTACAATCACCTTACAAAGCAAGCAGGTGCA</genome_strand>
        <mrna_strand>GGCGAGCGGGAGAGCAGTAGAAGCCCTTCGAGCTTACAGATCAGTGTTGAAGGCCACTCACAAAGCCTTCGCCGGAGATACTTTCATGCTCCAACAATCCGCCGCCGAGGTCAGAAAGAAATTCGAGGAGAATCGCCACGTCTCATCGGAGGCTGATATTCAGAGGCTATTGGAGGATGCAACTGAGGCCTCTTCGTTCATATCTACTATGATTATCCAAGCCAAAGCTACACCTTCCGGTGCTTTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGAAGCCTGAGAAAGAACATGCTGGAGCAACGCTTGAGATTCCTTCTGAAGAGATTCTTAAGAAGTCTGCTTGAGCATATTCAAGGAAACTCAGAGCATTTAGACTGCTGTGCTAGCACTTTTATCTTTCATTAACCCTGAGTTTGTCTTTTGAGTTTCTCCACTTGGAATTTTCTCGGAGATTCTGCTTTCTCCAAGGTCATGACATTTCAGTCTTTCCTTTTATTGTTACATTTAGGCCATAATTAGTGGATATTGCATCCATCTATCTATAACTCTCTCCTTTGTGTCGCTACAATCACCTTAGAAAGCAAGCAGATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E451343" ref_strand="+" ref_description="SGN-E451343 [cSTS-12-O8]">
      <seq>gttgaaggccactcacaaagccttcgccggagatactttcatgctccaacaatccgccgccgaggtcagaaagaaattcgaggagaatcgccacgtctcatcggaggctgatattcagaggctattggaggatgcaactgaggcctcttcgttcatatctactatgattatccaagccaaagctacaccttccggtgcttttgtggtgaagcctgagaaagaacatgctggagcaacgctcgagattccttctgaagagattcttaagaagtctgcttgagcatattcaaggaagcttagagcatttagactgctgtgttggcacttttatctttcataaaccgtgagtttgtcttttgagtttctccacttgaaattttctcggagattctgctttctccaaggtcatggcgtttcggtctttcctatttttgttacatttaggccataattagtggatattgcatccatctatctctttctctctcctttgtgtcgccacaaccacctagaaagcaagcagatgcagctttgcttaaacatggctactgtgatgaatgattntaaaaggttagttggaccaagtgtgccactaaatacagttttaagttttatttgctgacagtgtaaaatatttgcacaatgagtgtaatatgccttgctccaatagggtatgatcccctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="+" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="70228" stop="74296"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70528" g_stop="70730" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70731" i_stop="73518" i_length="2788">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73519" g_stop="73996" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="686" r_length="483" r_score="0.897"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="+" ref_id="SGN-E451343" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E451343" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70528" e_stop="70730"/>
          <exon e_start="73519" e_stop="73996"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGAAGGCCACTCATAAAGCCTTCGCCGGAGATACTTTCATGCTCCAACAATCCGCCGCCGAGGTCAGAAAGAAATTCGAGGAGAATCGCCACGTCTCATCGGAGGCTGATATTCAGAGGCTATTGGAGGATGCAACTGAGGCCTCTTCGTTCATATCTACTATGATTATCCAAGCCAAAGCTACACCTTCCGGTGCTTTTGGTATAACCCCTCAAATCTCCATATTATTGCGTTTATTCAATGTTATTTGTAATTTTTTTGATATTATGTTTGCGCACACCAGGTGTTTGTTTTATTGCTTCGAAGACATTTCTTTTTCCTTCATGAAAATCAATTCAGATTGATGTGAAACTTTTTGTTGCTGCAAAATGAATGTTTCATGATGACATTTTTAACAAGATAAAAATTACATACTAGAGCTTAGTTCAATAACTTGATGTAATACTGGATGTGGTTATGTTATTTGTTAGAGGTCAGGTCAGTGTGTTCCTAGGTTGGTGCAATAGCTAACGACTTTCCCAAACCTTTGAACTGCAAAATTGTTAAAGAACAAGTTCAAACAAATAGTTATTGCATTCAGCATCTTACTTTGAATGGTGCTATCTTTTTGTTTCATTTTTTTTGTGTGTGGTTTTTTAGCTTAGACCAAATACTAACTATATTGGGGACTTGTGACTTGAATTACCTTGATAACTGCCATAATAACATTTAGTGAAAGAATGTTGCTGTTGAGCTGTTGCTGGACCAGCTTGAGTGAAATCTCCGATCTTTGTAACGGTGTCTAGTCTATAATGCGTAAACATTGAGTTGGGCAGGTACTCTCTCTGTTAGTAGTGCCTACTACCTATGTACTCTCTCCGAAGTTTTAGTGCCTGTGCAGTCTCTGATGCTTTTAAATTTTTAGCAGAGCACCAGTTATTTGGCACCAAGACACTTAACATTTAGAGTATGCTAATTTTATTTAAGATCTTCTCTGCATAGCACCTTCAAAAGGTATTTCATTAGATATATCCACTAGTAAATACATGATATTGGAAGTGTGTTGTCTACTTCTCACTGAGACACATCTCTTTGAAATTGCCTGATTGGTGATTGACAATTGGCAGTTACAAACTTCCAAATATTACTTTTGTCAACTTGTGGTTAAGTCAAAATACCATAAATTTGGAGGCTCTTATTCTAAAGAGCCGTGGAAACTATTCAATCTCATAAATTTAAAACTCAATCATTGTTGATTACCCTTGCAACATCTAACATCTTCTTCACTGATCAAAAAACAATAAAACTCATTCATCATGTCTTGTGAGTGTTGTTGCCTAAATCCATTAGGAATCTAGTCACGTCAAGTAACATACTGAAGAGTAGTGATTCATTCACTTTATTTCCGTCTACCATGCAAATTTCTCAAGTTTGCAACAGTTATCAGCTTACAATAATTGAAAGTATGTTCTGTAGAGAGAATGATCAAACCGGTCCTTAATCTGTAGGGGTTGGACTGACAGAAATAGTCCTTAGTGTATATTAAAATATGTATAGTTTTGGTCTCATACCCTAAAACTATGGTTCCTCCTCATATTCTGTTTAAACAAATGGATTTCAAAGCACAAGATTCCAAGTTCCAATATCAAAAATTGAAGCTCAGACACTACATTTTTCATGGACAAAGTTCAATTTTCATGGCTGCAAAATCACTGTTTGTATGCATAGAGAGAGGAACAAATGCAGGTCATCCGGGGATTTGCTCAGTGCCCAAGTTTGTTACTTGAAGAAGATTGAAAGAAACTGATCGGAAGGTTATCATATTTCCCAAGGCTGATTCTGGATAACCATCCTCATCCTGTTGTTGTCCTACTTTGGAACTGAAGGTTCCTCATTCCAAATTTTCTGCTCCCATGTTGAGCATTTTTTCTCCTATTTGATGGCTCGAAAGTTTCTCTAGCTTTCATCATCATTCCCCCTTCCTGTTGATTCTACGTAGTAGGGTTTAATCAGTTATTCACAATTGTCAAATTGGAAGTGCACAGGAGACAAATTTCACCTACAGATGCATTTTTCTTTTTCATTCTAGTTCTGGATTTTTCCTCACCCAATTATTCTTGTATTCATGCATACAAAAAATTATCTTCCCCATTCGGTTCTTGGTATTTGGATATACTATGTTTGTGAAAATCACTAGGAAGTTACTTTAACGGAGGTTGGTTCTTGTTCAGACATAATTCAACTTTAACAGTTAGCTTTCAATATTTGTACTATTATAATTGTCCTCCTTTTCAGATGACTTATTTGATTGCTGATAAATGCTAAATATACAGCATACAGACATTATTAAGTACTTCACCATGCCTTCGTTGTGTTATTCAAAATTGTGCAATCAAATGGTCTATGTAAAAAATTAAAGTAAAAGAAGCTATATTTTTGCCAAGCTTAGTGAAATGTAGAAGAGCGAGGGGTGCATGGGAGGATGCAGTTCAAAGGTAACGGATTCACCTGAATCTGCTACTTCTCTTAAGGTTAAACCCATAAAGGAAAGATCCTACATCCACCTCTGGAGGGGTGATGCTTTAAACAATGTGTGAGGTGTCTAGAGGAAGAAGAACATAAGGAAATCAGAAAAGTGAAGGAAGCACTGGCATACACAAGTAAAGAAAGAAGAAATAGACTTTGTGGAACTCACGAATCACAATAAAGCTAGAAGTACTACTATCAAATTGAATTACACCATTAATTTTAACAGTATTTTTGTTTTGTACCATTAGTTTTTCGACATGAGATAAAAGATGTCCAGCTTTGACATACATTAAGGACCATTTCCTTTAAGTGGGGTATATATGATTGACCAAAACTGTTAACCCCCTAACATTAAAGGATCATTTTGATAGTTTTCTCCTGTTCTTTATCTGCTAAGTTTCCTGATGCTCTTTCGGTCTTTCCTTGCATTGATTCAATTCTGCTGCCTTTTTGACAAATATTTGAATGTTATTTGCTGCAGTGGTAAAGCCTGAGAAAGAACATGCTGGAGCAACGCTCGAGATTCCTTCTGAAGAGATTCTTAAGAAGTCAGCTTAAGCATATTCAAGGAAGCTCAGAGCATTTAGACTGCTGTGTTAGCACTTTAATCTTTCATAAACTGTGAGTTTTTCTTGTGAGTTTCTCCACTTGGAATTTTCTCAGAGGTTCTGCTTTCTCCAAGGTCATCGCGTTTCAGTCTTTCCTGTTTTTGTTACATTTAGGCCATAATTAGTGGATACTGCATCCATCTATCTACATCTTTCTCCTTTGTGTAGCTACAATCACCTTACAAAGCAAGCAGGTGCAGCTTTGCTTAAACATGGCTATTGTGATAAATGA-T-TAAAAGGTTAGTTGGACCAAATGTGCCACTAAATAGAG-TTTAAATTTTATTTATTGACGGTGTAAAATATTTGCAC-A--AGTGTAATTTTCCTTGCTCCAATAGGGCATGATCCCCTTTT</genome_strand>
        <mrna_strand>GTTGAAGGCCACTCACAAAGCCTTCGCCGGAGATACTTTCATGCTCCAACAATCCGCCGCCGAGGTCAGAAAGAAATTCGAGGAGAATCGCCACGTCTCATCGGAGGCTGATATTCAGAGGCTATTGGAGGATGCAACTGAGGCCTCTTCGTTCATATCTACTATGATTATCCAAGCCAAAGCTACACCTTCCGGTGCTTTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGAAGCCTGAGAAAGAACATGCTGGAGCAACGCTCGAGATTCCTTCTGAAGAGATTCTTAAGAAGTCTGCTTGAGCATATTCAAGGAAGCTTAGAGCATTTAGACTGCTGTGTTGGCACTTTTATCTTTCATAAACCGTGAGTTTGTCTTTTGAGTTTCTCCACTTGAAATTTTCTCGGAGATTCTGCTTTCTCCAAGGTCATGGCGTTTCGGTCTTTCCTATTTTTGTTACATTTAGGCCATAATTAGTGGATATTGCATCCATCTATCTCTTTCTCTCTCCTTTGTGTCGCCACAACCACC-TAGAAAGCAAGCAGATGCAGCTTTGCTTAAACATGGCTACTGTGATGAATGATTNTAAAAGGTTAGTTGGACCAAGTGTGCCACTAAATACAGTTTTAAGTTTTATTTGCTGACAGTGTAAAATATTTGCACAATGAGTGTAATATGCCTTGCTCCAATAGGGTATGATCCCCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E423917" ref_strand="+" ref_description="SGN-E423917 [STM-42-D12]">
      <seq>gttgaaggccactcacaaagccttcgccggagatactttcatgctccaacaatccgccgccgaggtcagaaagaaattcgaggagaatcgccacgtctcatcggaggctgatattcagaggctattggaggatgcaactgaggcctcttcgttcatatctactatgattatccaagccaaagctacaccttccggtgcttttgtggtgaagcctgagaaagaacatgctggagcaacgctcgagattccttctgaagagattcttaagaagtctgcttgagcatattcaaggaagcttagagcatttagactgctgtgttggcacttttatctttcataaaccgtgagtttgtcttttgagtttctccacttgaaattttctcggagattctgctttctccaaggtcatggcgtttcggtctttcctatttttgttacatttaggccataattagtggatattgcatccatctatctctttctctctcctttgtgtcgccacaaccacctagaaagcaagcagatgcagctttgctttaacatggctactgtgatgaatgattttaaaaggttagttggacccagtgtgccactaaatacagttttaagttttattttgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="+" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="70228" stop="74238"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70528" g_stop="70730" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70731" i_stop="73518" i_length="2788">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73519" g_stop="73937" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="622" r_length="419" r_score="0.897"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="+" ref_id="SGN-E423917" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E423917" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70528" e_stop="70730"/>
          <exon e_start="73519" e_stop="73937"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGAAGGCCACTCATAAAGCCTTCGCCGGAGATACTTTCATGCTCCAACAATCCGCCGCCGAGGTCAGAAAGAAATTCGAGGAGAATCGCCACGTCTCATCGGAGGCTGATATTCAGAGGCTATTGGAGGATGCAACTGAGGCCTCTTCGTTCATATCTACTATGATTATCCAAGCCAAAGCTACACCTTCCGGTGCTTTTGGTATAACCCCTCAAATCTCCATATTATTGCGTTTATTCAATGTTATTTGTAATTTTTTTGATATTATGTTTGCGCACACCAGGTGTTTGTTTTATTGCTTCGAAGACATTTCTTTTTCCTTCATGAAAATCAATTCAGATTGATGTGAAACTTTTTGTTGCTGCAAAATGAATGTTTCATGATGACATTTTTAACAAGATAAAAATTACATACTAGAGCTTAGTTCAATAACTTGATGTAATACTGGATGTGGTTATGTTATTTGTTAGAGGTCAGGTCAGTGTGTTCCTAGGTTGGTGCAATAGCTAACGACTTTCCCAAACCTTTGAACTGCAAAATTGTTAAAGAACAAGTTCAAACAAATAGTTATTGCATTCAGCATCTTACTTTGAATGGTGCTATCTTTTTGTTTCATTTTTTTTGTGTGTGGTTTTTTAGCTTAGACCAAATACTAACTATATTGGGGACTTGTGACTTGAATTACCTTGATAACTGCCATAATAACATTTAGTGAAAGAATGTTGCTGTTGAGCTGTTGCTGGACCAGCTTGAGTGAAATCTCCGATCTTTGTAACGGTGTCTAGTCTATAATGCGTAAACATTGAGTTGGGCAGGTACTCTCTCTGTTAGTAGTGCCTACTACCTATGTACTCTCTCCGAAGTTTTAGTGCCTGTGCAGTCTCTGATGCTTTTAAATTTTTAGCAGAGCACCAGTTATTTGGCACCAAGACACTTAACATTTAGAGTATGCTAATTTTATTTAAGATCTTCTCTGCATAGCACCTTCAAAAGGTATTTCATTAGATATATCCACTAGTAAATACATGATATTGGAAGTGTGTTGTCTACTTCTCACTGAGACACATCTCTTTGAAATTGCCTGATTGGTGATTGACAATTGGCAGTTACAAACTTCCAAATATTACTTTTGTCAACTTGTGGTTAAGTCAAAATACCATAAATTTGGAGGCTCTTATTCTAAAGAGCCGTGGAAACTATTCAATCTCATAAATTTAAAACTCAATCATTGTTGATTACCCTTGCAACATCTAACATCTTCTTCACTGATCAAAAAACAATAAAACTCATTCATCATGTCTTGTGAGTGTTGTTGCCTAAATCCATTAGGAATCTAGTCACGTCAAGTAACATACTGAAGAGTAGTGATTCATTCACTTTATTTCCGTCTACCATGCAAATTTCTCAAGTTTGCAACAGTTATCAGCTTACAATAATTGAAAGTATGTTCTGTAGAGAGAATGATCAAACCGGTCCTTAATCTGTAGGGGTTGGACTGACAGAAATAGTCCTTAGTGTATATTAAAATATGTATAGTTTTGGTCTCATACCCTAAAACTATGGTTCCTCCTCATATTCTGTTTAAACAAATGGATTTCAAAGCACAAGATTCCAAGTTCCAATATCAAAAATTGAAGCTCAGACACTACATTTTTCATGGACAAAGTTCAATTTTCATGGCTGCAAAATCACTGTTTGTATGCATAGAGAGAGGAACAAATGCAGGTCATCCGGGGATTTGCTCAGTGCCCAAGTTTGTTACTTGAAGAAGATTGAAAGAAACTGATCGGAAGGTTATCATATTTCCCAAGGCTGATTCTGGATAACCATCCTCATCCTGTTGTTGTCCTACTTTGGAACTGAAGGTTCCTCATTCCAAATTTTCTGCTCCCATGTTGAGCATTTTTTCTCCTATTTGATGGCTCGAAAGTTTCTCTAGCTTTCATCATCATTCCCCCTTCCTGTTGATTCTACGTAGTAGGGTTTAATCAGTTATTCACAATTGTCAAATTGGAAGTGCACAGGAGACAAATTTCACCTACAGATGCATTTTTCTTTTTCATTCTAGTTCTGGATTTTTCCTCACCCAATTATTCTTGTATTCATGCATACAAAAAATTATCTTCCCCATTCGGTTCTTGGTATTTGGATATACTATGTTTGTGAAAATCACTAGGAAGTTACTTTAACGGAGGTTGGTTCTTGTTCAGACATAATTCAACTTTAACAGTTAGCTTTCAATATTTGTACTATTATAATTGTCCTCCTTTTCAGATGACTTATTTGATTGCTGATAAATGCTAAATATACAGCATACAGACATTATTAAGTACTTCACCATGCCTTCGTTGTGTTATTCAAAATTGTGCAATCAAATGGTCTATGTAAAAAATTAAAGTAAAAGAAGCTATATTTTTGCCAAGCTTAGTGAAATGTAGAAGAGCGAGGGGTGCATGGGAGGATGCAGTTCAAAGGTAACGGATTCACCTGAATCTGCTACTTCTCTTAAGGTTAAACCCATAAAGGAAAGATCCTACATCCACCTCTGGAGGGGTGATGCTTTAAACAATGTGTGAGGTGTCTAGAGGAAGAAGAACATAAGGAAATCAGAAAAGTGAAGGAAGCACTGGCATACACAAGTAAAGAAAGAAGAAATAGACTTTGTGGAACTCACGAATCACAATAAAGCTAGAAGTACTACTATCAAATTGAATTACACCATTAATTTTAACAGTATTTTTGTTTTGTACCATTAGTTTTTCGACATGAGATAAAAGATGTCCAGCTTTGACATACATTAAGGACCATTTCCTTTAAGTGGGGTATATATGATTGACCAAAACTGTTAACCCCCTAACATTAAAGGATCATTTTGATAGTTTTCTCCTGTTCTTTATCTGCTAAGTTTCCTGATGCTCTTTCGGTCTTTCCTTGCATTGATTCAATTCTGCTGCCTTTTTGACAAATATTTGAATGTTATTTGCTGCAGTGGTAAAGCCTGAGAAAGAACATGCTGGAGCAACGCTCGAGATTCCTTCTGAAGAGATTCTTAAGAAGTCAGCTTAAGCATATTCAAGGAAGCTCAGAGCATTTAGACTGCTGTGTTAGCACTTTAATCTTTCATAAACTGTGAGTTTTTCTTGTGAGTTTCTCCACTTGGAATTTTCTCAGAGGTTCTGCTTTCTCCAAGGTCATCGCGTTTCAGTCTTTCCTGTTTTTGTTACATTTAGGCCATAATTAGTGGATACTGCATCCATCTATCTACATCTTTCTCCTTTGTGTAGCTACAATCACCTTACAAAGCAAGCAGGTGCAGCTTTGCTTAAACATGGCTATTGTGATAAATGA--TTAAAAGGTTAGTTGGACCAAATGTGCCACTAAATAGAGTTTAAATTTTATTTATTGACG</genome_strand>
        <mrna_strand>GTTGAAGGCCACTCACAAAGCCTTCGCCGGAGATACTTTCATGCTCCAACAATCCGCCGCCGAGGTCAGAAAGAAATTCGAGGAGAATCGCCACGTCTCATCGGAGGCTGATATTCAGAGGCTATTGGAGGATGCAACTGAGGCCTCTTCGTTCATATCTACTATGATTATCCAAGCCAAAGCTACACCTTCCGGTGCTTTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGAAGCCTGAGAAAGAACATGCTGGAGCAACGCTCGAGATTCCTTCTGAAGAGATTCTTAAGAAGTCTGCTTGAGCATATTCAAGGAAGCTTAGAGCATTTAGACTGCTGTGTTGGCACTTTTATCTTTCATAAACCGTGAGTTTGTCTTTTGAGTTTCTCCACTTGAAATTTTCTCGGAGATTCTGCTTTCTCCAAGGTCATGGCGTTTCGGTCTTTCCTATTTTTGTTACATTTAGGCCATAATTAGTGGATATTGCATCCATCTATCTCTTTCTCTCTCCTTTGTGTCGCCACAACCACC-TAGAAAGCAAGCAGATGCAGCTTTGCTTTAACATGGCTACTGTGATGAATGATTTTAAAAGGTTAGTTGGACCCAGTGTGCCACTAAATACAGTTTTAAGTTT-TATTTTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E605165" ref_strand="+" ref_description="SGN-E605165 [21078]">
      <seq>tgaggcctcttcgttcatatctactatgattatccaagccaaagctacaccttccggtgcttttgtggtgaagcctgagaaagaacatgctggagcaacgcttgagattccttctgaagagattcttaagaagtctgcttgagcatattcaaggaaactcagagcatttagactgctgtgctagcacttttatctttcattaaccctgagtttgtcttttgagtttctccacttggaattttctcggagattctgctttctccaaggtcatgacatttcagtctttcctttttttgttacatttaggccataattagtggatattgcatccatctaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="+" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="70366" stop="74089"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70666" g_stop="70730" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70731" i_stop="73518" i_length="2788">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73519" g_stop="73788" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="335" r_length="270" r_score="0.930"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73789" i_stop="74082" i_length="294">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.972" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74083" g_stop="74089" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="342" r_length="7" r_score="0.571"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="343" polyA_stop="356"/>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="+" ref_id="SGN-E605165" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>342</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E605165" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70666" e_stop="70730"/>
          <exon e_start="73519" e_stop="73788"/>
          <exon e_start="74083" e_stop="74089"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGGCCTCTTCGTTCATATCTACTATGATTATCCAAGCCAAAGCTACACCTTCCGGTGCTTTTGGTATAACCCCTCAAATCTCCATATTATTGCGTTTATTCAATGTTATTTGTAATTTTTTTGATATTATGTTTGCGCACACCAGGTGTTTGTTTTATTGCTTCGAAGACATTTCTTTTTCCTTCATGAAAATCAATTCAGATTGATGTGAAACTTTTTGTTGCTGCAAAATGAATGTTTCATGATGACATTTTTAACAAGATAAAAATTACATACTAGAGCTTAGTTCAATAACTTGATGTAATACTGGATGTGGTTATGTTATTTGTTAGAGGTCAGGTCAGTGTGTTCCTAGGTTGGTGCAATAGCTAACGACTTTCCCAAACCTTTGAACTGCAAAATTGTTAAAGAACAAGTTCAAACAAATAGTTATTGCATTCAGCATCTTACTTTGAATGGTGCTATCTTTTTGTTTCATTTTTTTTGTGTGTGGTTTTTTAGCTTAGACCAAATACTAACTATATTGGGGACTTGTGACTTGAATTACCTTGATAACTGCCATAATAACATTTAGTGAAAGAATGTTGCTGTTGAGCTGTTGCTGGACCAGCTTGAGTGAAATCTCCGATCTTTGTAACGGTGTCTAGTCTATAATGCGTAAACATTGAGTTGGGCAGGTACTCTCTCTGTTAGTAGTGCCTACTACCTATGTACTCTCTCCGAAGTTTTAGTGCCTGTGCAGTCTCTGATGCTTTTAAATTTTTAGCAGAGCACCAGTTATTTGGCACCAAGACACTTAACATTTAGAGTATGCTAATTTTATTTAAGATCTTCTCTGCATAGCACCTTCAAAAGGTATTTCATTAGATATATCCACTAGTAAATACATGATATTGGAAGTGTGTTGTCTACTTCTCACTGAGACACATCTCTTTGAAATTGCCTGATTGGTGATTGACAATTGGCAGTTACAAACTTCCAAATATTACTTTTGTCAACTTGTGGTTAAGTCAAAATACCATAAATTTGGAGGCTCTTATTCTAAAGAGCCGTGGAAACTATTCAATCTCATAAATTTAAAACTCAATCATTGTTGATTACCCTTGCAACATCTAACATCTTCTTCACTGATCAAAAAACAATAAAACTCATTCATCATGTCTTGTGAGTGTTGTTGCCTAAATCCATTAGGAATCTAGTCACGTCAAGTAACATACTGAAGAGTAGTGATTCATTCACTTTATTTCCGTCTACCATGCAAATTTCTCAAGTTTGCAACAGTTATCAGCTTACAATAATTGAAAGTATGTTCTGTAGAGAGAATGATCAAACCGGTCCTTAATCTGTAGGGGTTGGACTGACAGAAATAGTCCTTAGTGTATATTAAAATATGTATAGTTTTGGTCTCATACCCTAAAACTATGGTTCCTCCTCATATTCTGTTTAAACAAATGGATTTCAAAGCACAAGATTCCAAGTTCCAATATCAAAAATTGAAGCTCAGACACTACATTTTTCATGGACAAAGTTCAATTTTCATGGCTGCAAAATCACTGTTTGTATGCATAGAGAGAGGAACAAATGCAGGTCATCCGGGGATTTGCTCAGTGCCCAAGTTTGTTACTTGAAGAAGATTGAAAGAAACTGATCGGAAGGTTATCATATTTCCCAAGGCTGATTCTGGATAACCATCCTCATCCTGTTGTTGTCCTACTTTGGAACTGAAGGTTCCTCATTCCAAATTTTCTGCTCCCATGTTGAGCATTTTTTCTCCTATTTGATGGCTCGAAAGTTTCTCTAGCTTTCATCATCATTCCCCCTTCCTGTTGATTCTACGTAGTAGGGTTTAATCAGTTATTCACAATTGTCAAATTGGAAGTGCACAGGAGACAAATTTCACCTACAGATGCATTTTTCTTTTTCATTCTAGTTCTGGATTTTTCCTCACCCAATTATTCTTGTATTCATGCATACAAAAAATTATCTTCCCCATTCGGTTCTTGGTATTTGGATATACTATGTTTGTGAAAATCACTAGGAAGTTACTTTAACGGAGGTTGGTTCTTGTTCAGACATAATTCAACTTTAACAGTTAGCTTTCAATATTTGTACTATTATAATTGTCCTCCTTTTCAGATGACTTATTTGATTGCTGATAAATGCTAAATATACAGCATACAGACATTATTAAGTACTTCACCATGCCTTCGTTGTGTTATTCAAAATTGTGCAATCAAATGGTCTATGTAAAAAATTAAAGTAAAAGAAGCTATATTTTTGCCAAGCTTAGTGAAATGTAGAAGAGCGAGGGGTGCATGGGAGGATGCAGTTCAAAGGTAACGGATTCACCTGAATCTGCTACTTCTCTTAAGGTTAAACCCATAAAGGAAAGATCCTACATCCACCTCTGGAGGGGTGATGCTTTAAACAATGTGTGAGGTGTCTAGAGGAAGAAGAACATAAGGAAATCAGAAAAGTGAAGGAAGCACTGGCATACACAAGTAAAGAAAGAAGAAATAGACTTTGTGGAACTCACGAATCACAATAAAGCTAGAAGTACTACTATCAAATTGAATTACACCATTAATTTTAACAGTATTTTTGTTTTGTACCATTAGTTTTTCGACATGAGATAAAAGATGTCCAGCTTTGACATACATTAAGGACCATTTCCTTTAAGTGGGGTATATATGATTGACCAAAACTGTTAACCCCCTAACATTAAAGGATCATTTTGATAGTTTTCTCCTGTTCTTTATCTGCTAAGTTTCCTGATGCTCTTTCGGTCTTTCCTTGCATTGATTCAATTCTGCTGCCTTTTTGACAAATATTTGAATGTTATTTGCTGCAGTGGTAAAGCCTGAGAAAGAACATGCTGGAGCAACGCTCGAGATTCCTTCTGAAGAGATTCTTAAGAAGTCAGCTTAAGCATATTCAAGGAAGCTCAGAGCATTTAGACTGCTGTGTTAGCACTTTAATCTTTCATAAACTGTGAGTTTTTCTTGTGAGTTTCTCCACTTGGAATTTTCTCAGAGGTTCTGCTTTCTCCAAGGTCATCGCGTTTCAGTCTTTCCTGTTTTTGTTACATTTAGGCCATAATTAGTGGATACTGCATCCATCTATCTACATCTTTCTCCTTTGTGTAGCTACAATCACCTTACAAAGCAAGCAGGTGCAGCTTTGCTTAAACATGGCTATTGTGATAAATGATTAAAAGGTTAGTTGGACCAAATGTGCCACTAAATAGAGTTTAAATTTTATTTATTGACGGTGTAAAATATTTGCACAAGTGTAATTTTCCTTGCTCCAATAGGGCATGATCCCCTTTTGCACCAACTAATGCACAATGTTAACATTATTTACCTATCATTGGCCTTTATGTGACCCATTGTGTTAGTAATTTTTATTTGATCAGTGAATAA</genome_strand>
        <mrna_strand>TGAGGCCTCTTCGTTCATATCTACTATGATTATCCAAGCCAAAGCTACACCTTCCGGTGCTTTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGAAGCCTGAGAAAGAACATGCTGGAGCAACGCTTGAGATTCCTTCTGAAGAGATTCTTAAGAAGTCTGCTTGAGCATATTCAAGGAAACTCAGAGCATTTAGACTGCTGTGCTAGCACTTTTATCTTTCATTAACCCTGAGTTTGTCTTTTGAGTTTCTCCACTTGGAATTTTCTCGGAGATTCTGCTTTCTCCAAGGTCATGACATTTCAGTCTTTCCTTTTTTTGTTACATTTAGGCCATAATTAGTGGATATTGCATCCATCT......................................................................................................................................................................................................................................................................................................AAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E391900" ref_strand="+" ref_description="SGN-E391900 [TUS-24-O19](-)">
      <seq>caagccaaagctacaccttccggggcttttgtggtaaagcctgggaaagaacatgttggagcaacgctcgagattctttttgaagcccccccccccccgtcagtttaagcatattcaaggaagttcagagcatttagactggtgtgttagcactttaatttttcataaactgggagttttttttgtgagtttttccacttggaattttttcagaggttttgctttttccaaggtcatcgggtttcagtttttcctgtttttgttacatttaggccataattagtggatactgcatccatttatttacatttttttcctttgggtagctacaatccccttacaaagcaagcaggggcagctttgcttaaacatggtttttgtgataaatgattaaaaggttagttggaccaaatgtgccactaaatagagtttaaattttatttattgacggtgtaaaatatttgcacaagtgtaattttccttgttccaatagggcatgatccccttttgccccaacttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="+" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="70400" stop="74307"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70700" g_stop="70730" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70731" i_stop="73518" i_length="2788">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73519" g_stop="74015" g_length="497"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="528" r_length="497" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="529" polyA_stop="564"/>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="+" ref_id="SGN-E391900" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391900" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70700" e_stop="70730"/>
          <exon e_start="73519" e_stop="74015"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGCCAAAGCTACACCTTCCGGTGCTTTTGGTATAACCCCTCAAATCTCCATATTATTGCGTTTATTCAATGTTATTTGTAATTTTTTTGATATTATGTTTGCGCACACCAGGTGTTTGTTTTATTGCTTCGAAGACATTTCTTTTTCCTTCATGAAAATCAATTCAGATTGATGTGAAACTTTTTGTTGCTGCAAAATGAATGTTTCATGATGACATTTTTAACAAGATAAAAATTACATACTAGAGCTTAGTTCAATAACTTGATGTAATACTGGATGTGGTTATGTTATTTGTTAGAGGTCAGGTCAGTGTGTTCCTAGGTTGGTGCAATAGCTAACGACTTTCCCAAACCTTTGAACTGCAAAATTGTTAAAGAACAAGTTCAAACAAATAGTTATTGCATTCAGCATCTTACTTTGAATGGTGCTATCTTTTTGTTTCATTTTTTTTGTGTGTGGTTTTTTAGCTTAGACCAAATACTAACTATATTGGGGACTTGTGACTTGAATTACCTTGATAACTGCCATAATAACATTTAGTGAAAGAATGTTGCTGTTGAGCTGTTGCTGGACCAGCTTGAGTGAAATCTCCGATCTTTGTAACGGTGTCTAGTCTATAATGCGTAAACATTGAGTTGGGCAGGTACTCTCTCTGTTAGTAGTGCCTACTACCTATGTACTCTCTCCGAAGTTTTAGTGCCTGTGCAGTCTCTGATGCTTTTAAATTTTTAGCAGAGCACCAGTTATTTGGCACCAAGACACTTAACATTTAGAGTATGCTAATTTTATTTAAGATCTTCTCTGCATAGCACCTTCAAAAGGTATTTCATTAGATATATCCACTAGTAAATACATGATATTGGAAGTGTGTTGTCTACTTCTCACTGAGACACATCTCTTTGAAATTGCCTGATTGGTGATTGACAATTGGCAGTTACAAACTTCCAAATATTACTTTTGTCAACTTGTGGTTAAGTCAAAATACCATAAATTTGGAGGCTCTTATTCTAAAGAGCCGTGGAAACTATTCAATCTCATAAATTTAAAACTCAATCATTGTTGATTACCCTTGCAACATCTAACATCTTCTTCACTGATCAAAAAACAATAAAACTCATTCATCATGTCTTGTGAGTGTTGTTGCCTAAATCCATTAGGAATCTAGTCACGTCAAGTAACATACTGAAGAGTAGTGATTCATTCACTTTATTTCCGTCTACCATGCAAATTTCTCAAGTTTGCAACAGTTATCAGCTTACAATAATTGAAAGTATGTTCTGTAGAGAGAATGATCAAACCGGTCCTTAATCTGTAGGGGTTGGACTGACAGAAATAGTCCTTAGTGTATATTAAAATATGTATAGTTTTGGTCTCATACCCTAAAACTATGGTTCCTCCTCATATTCTGTTTAAACAAATGGATTTCAAAGCACAAGATTCCAAGTTCCAATATCAAAAATTGAAGCTCAGACACTACATTTTTCATGGACAAAGTTCAATTTTCATGGCTGCAAAATCACTGTTTGTATGCATAGAGAGAGGAACAAATGCAGGTCATCCGGGGATTTGCTCAGTGCCCAAGTTTGTTACTTGAAGAAGATTGAAAGAAACTGATCGGAAGGTTATCATATTTCCCAAGGCTGATTCTGGATAACCATCCTCATCCTGTTGTTGTCCTACTTTGGAACTGAAGGTTCCTCATTCCAAATTTTCTGCTCCCATGTTGAGCATTTTTTCTCCTATTTGATGGCTCGAAAGTTTCTCTAGCTTTCATCATCATTCCCCCTTCCTGTTGATTCTACGTAGTAGGGTTTAATCAGTTATTCACAATTGTCAAATTGGAAGTGCACAGGAGACAAATTTCACCTACAGATGCATTTTTCTTTTTCATTCTAGTTCTGGATTTTTCCTCACCCAATTATTCTTGTATTCATGCATACAAAAAATTATCTTCCCCATTCGGTTCTTGGTATTTGGATATACTATGTTTGTGAAAATCACTAGGAAGTTACTTTAACGGAGGTTGGTTCTTGTTCAGACATAATTCAACTTTAACAGTTAGCTTTCAATATTTGTACTATTATAATTGTCCTCCTTTTCAGATGACTTATTTGATTGCTGATAAATGCTAAATATACAGCATACAGACATTATTAAGTACTTCACCATGCCTTCGTTGTGTTATTCAAAATTGTGCAATCAAATGGTCTATGTAAAAAATTAAAGTAAAAGAAGCTATATTTTTGCCAAGCTTAGTGAAATGTAGAAGAGCGAGGGGTGCATGGGAGGATGCAGTTCAAAGGTAACGGATTCACCTGAATCTGCTACTTCTCTTAAGGTTAAACCCATAAAGGAAAGATCCTACATCCACCTCTGGAGGGGTGATGCTTTAAACAATGTGTGAGGTGTCTAGAGGAAGAAGAACATAAGGAAATCAGAAAAGTGAAGGAAGCACTGGCATACACAAGTAAAGAAAGAAGAAATAGACTTTGTGGAACTCACGAATCACAATAAAGCTAGAAGTACTACTATCAAATTGAATTACACCATTAATTTTAACAGTATTTTTGTTTTGTACCATTAGTTTTTCGACATGAGATAAAAGATGTCCAGCTTTGACATACATTAAGGACCATTTCCTTTAAGTGGGGTATATATGATTGACCAAAACTGTTAACCCCCTAACATTAAAGGATCATTTTGATAGTTTTCTCCTGTTCTTTATCTGCTAAGTTTCCTGATGCTCTTTCGGTCTTTCCTTGCATTGATTCAATTCTGCTGCCTTTTTGACAAATATTTGAATGTTATTTGCTGCAGTGGTAAAGCCTGAGAAAGAACATGCTGGAGCAACGCTCGAGATTCCTTCTGAAGAGATTCTTAAGAAGTCAGCTTAAGCATATTCAAGGAAGCTCAGAGCATTTAGACTGCTGTGTTAGCACTTTAATCTTTCATAAACTGTGAGTTTTTCTTGTGAGTTTCTCCACTTGGAATTTTCTCAGAGGTTCTGCTTTCTCCAAGGTCATCGCGTTTCAGTCTTTCCTGTTTTTGTTACATTTAGGCCATAATTAGTGGATACTGCATCCATCTATCTACATCTTTCTCCTTTGTGTAGCTACAATCACCTTACAAAGCAAGCAGGTGCAGCTTTGCTTAAACATGGCTATTGTGATAAATGATTAAAAGGTTAGTTGGACCAAATGTGCCACTAAATAGAGTTTAAATTTTATTTATTGACGGTGTAAAATATTTGCACAAGTGTAATTTTCCTTGCTCCAATAGGGCATGATCCCCTTTTGCACCAACTAATGCACAAT</genome_strand>
        <mrna_strand>CAAGCCAAAGCTACACCTTCCGGGGCTTTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTAAAGCCTGGGAAAGAACATGTTGGAGCAACGCTCGAGATTCTTTTTGAAGCCCCCCCCCCCCCGTCAGTTTAAGCATATTCAAGGAAGTTCAGAGCATTTAGACTGGTGTGTTAGCACTTTAATTTTTCATAAACTGGGAGTTTTTTTTGTGAGTTTTTCCACTTGGAATTTTTTCAGAGGTTTTGCTTTTTCCAAGGTCATCGGGTTTCAGTTTTTCCTGTTTTTGTTACATTTAGGCCATAATTAGTGGATACTGCATCCATTTATTTACATTTTTTTCCTTTGGGTAGCTACAATCCCCTTACAAAGCAAGCAGGGGCAGCTTTGCTTAAACATGGTTTTTGTGATAAATGATTAAAAGGTTAGTTGGACCAAATGTGCCACTAAATAGAGTTTAAATTTTATTTATTGACGGTGTAAAATATTTGCACAAGTGTAATTTTCCTTGTTCCAATAGGGCATGATCCCCTTTTGCCCCAACTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E705357" ref_strand="+" ref_description="SGN-E705357 [FA26DF04]">
      <seq>cttttctctctctttttcacacgattttgagagaagaaaaataaatagatcatgacttccgaattgatttatcgaggaccggaatcacttccggtgaccgacggttacactcccaaaccacataaaccatggtttactgtaattcgtccccttcggtacttgctccgagaacagagaattgtttttctattcgcaggcattgctatcgcttctctaatttttgcttttttaccgtcttctcggtcctccggaggatcgagctacactaacaccgggatctacgattcatacttaccgtcggagtcgactgagtctcaggtggctcaccggatgatctatcataatcgggtcgggttcgggtcgattaattccggtgggaacattccgttgggattaaagcggaaggttttgaggattgtggtgactggtggtgctggttttgttggtaggcatttagtggatcgtttgattgcgagaggtgatactgtgatcggcgttgataatttcttcaccggacggaaagacaacgttatgcatcattttggtaaccctaggtttgagcttattacacgtgatgttgatgagccacttttgcttgaagttgaccacatctatcatctcgcttgccctgcttctcccgttcattacaagcataatcccgtcaaaactatcaagactagtgtagttggtactttgaacatgctgggattggctacaagagtctgtgcgaggtttttgctaaccaacact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="+" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="85979" stop="87432"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86279" g_stop="86951" g_length="673"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="672" r_length="672" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86952" i_stop="87054" i_length="103">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87055" g_stop="87132" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="673" r_stop="750" r_length="78" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="+" ref_id="SGN-E705357" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>751</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705357" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86279" e_stop="86951"/>
          <exon e_start="87055" e_stop="87132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTCTCTCTCTTTTTCAACACAATTTTGAGAGAAGAAAAATAAATAAATCATGACTTCCGAATTGATTTATCGTGGACCGGAATCAGTTCCGGTGACCGACGGTTACACTCCCAAACCACATAAACCATGGTTTACTGTAATTCGTCCCCTTCGTTACTTGCTCCGAGAACAGAGAATTGTTTTTCTATTCGCAGGCATTGCTATCGCTTCTCTAATTTTTGCTTTTTTACCGTCTTCTCGTTCCTCCGGAGGATCGAGCTACGCTAACACCGGGATCTACGATTCGTACTTACCGTCGGAGTCGACTGAGTCTCAGGTGGCTCACCGGATGATCTATCATAATCGGGTCGGGTTCGGGTCGATTAATTCCGGTGGGAAGATCCCGTTGGGATTAAAGCGGAAGGTTTTGAGGATTGTGGTGACTGGTGGTGCTGGTTTTGTTGGTAGTCATTTAGTGGATCGTTTGATTGCGAGAGGTGATAGTGTGATCGTCGTTGATAATTTCTTCACCGGACGGAAAGAGAACGTTATGCATCATTTTGGTAACCCTAGGTTTGAGCTTATTAGACATGATGTTGTTGAGCCACTTTTGCTTGAAGTTGACCAGATCTATCATCTCGCTTGCCCTGCTTCTCCCGTTCATTACAAGCATAATCCCGTCAAAACTATCATATCCTTCTTTTTTAAAAATTATCATTAATTTTAATTACGTGCATAAAATTATATTAAATATATTATTATCATCGTTTCATCCTTGACGGATTAATTTTTACAAGACTAATGTAGTTGGTACTTTGAACATGCTGGGATTGGCTAAAAGAGTCGGTGCGAGGTTTTTGCTAACCAGCACT</genome_strand>
        <mrna_strand>CTTTTCTCTCTCTTTTTC-ACACGATTTTGAGAGAAGAAAAATAAATAGATCATGACTTCCGAATTGATTTATCGAGGACCGGAATCACTTCCGGTGACCGACGGTTACACTCCCAAACCACATAAACCATGGTTTACTGTAATTCGTCCCCTTCGGTACTTGCTCCGAGAACAGAGAATTGTTTTTCTATTCGCAGGCATTGCTATCGCTTCTCTAATTTTTGCTTTTTTACCGTCTTCTCGGTCCTCCGGAGGATCGAGCTACACTAACACCGGGATCTACGATTCATACTTACCGTCGGAGTCGACTGAGTCTCAGGTGGCTCACCGGATGATCTATCATAATCGGGTCGGGTTCGGGTCGATTAATTCCGGTGGGAACATTCCGTTGGGATTAAAGCGGAAGGTTTTGAGGATTGTGGTGACTGGTGGTGCTGGTTTTGTTGGTAGGCATTTAGTGGATCGTTTGATTGCGAGAGGTGATACTGTGATCGGCGTTGATAATTTCTTCACCGGACGGAAAGACAACGTTATGCATCATTTTGGTAACCCTAGGTTTGAGCTTATTACACGTGATGTTGATGAGCCACTTTTGCTTGAAGTTGACCACATCTATCATCTCGCTTGCCCTGCTTCTCCCGTTCATTACAAGCATAATCCCGTCAAAACTATC.......................................................................................................AAGACTAGTGTAGTTGGTACTTTGAACATGCTGGGATTGGCTACAAGAGTCTGTGCGAGGTTTTTGCTAACCAACACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E604685" ref_strand="+" ref_description="SGN-E604685 [74823]">
      <seq>cttttctctctcttttaacccaattttgagagaaagaaaaatcatataatggcttctgaattgatctaccgcggaccggaatcacttccggttcccgacagttacactcccaaaccacacaaaccatggtttactgtaattcgtccccttcgttacttgctacgagaacagagaatcgtttttctattcacaggcattgctatcgcttctctaatttttgcctttttaccttcttctcgttccggaggatcgagctacgcaaacaccgggatctacgattcgtacttgccgtcggagtcgactcagtctcaggtggctcaccggattatctatcagaatcgggtcgggttcgggtcgtttaattccggtgggaagatcccgttgggattgcagcggaagagtttgaggatcgtggtgactggtggtgctggttttgtaggtagtcatcttgtggaccgtttgattgcgagaggtgatagcgtcatcgtcgttgataatttctttaccggacggaaagagaatgttatgcatcattttggtaaccctaggtttgagcttattagacatgatgttgttgagccacttttgcttgaaagttgaccagatctatcatctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="+" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="86006" stop="87200"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86279" g_stop="86900" g_length="622"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="616" r_length="616" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="+" ref_id="SGN-E604685" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E604685" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86279" e_stop="86900"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTCTCTCTCTTTTTCAACACAATTTTGAGAGAAGAAAAATAAATAAATCATGACTTCCGAATTGATTTATCGTGGACCGGAATCAGTTCCGGTGACCGACGGTTACACTCCCAAACCACATAAACCATGGTTTACTGTAATTCGTCCCCTTCGTTACTTGCTCCGAGAACAGAGAATTGTTTTTCTATTCGCAGGCATTGCTATCGCTTCTCTAATTTTTGCTTTTTTACCGTCTTCTCGTTCCTCCGGAGGATCGAGCTACGCTAACACCGGGATCTACGATTCGTACTTACCGTCGGAGTCGACTGAGTCTCAGGTGGCTCACCGGATGATCTATCATAATCGGGTCGGGTTCGGGTCGATTAATTCCGGTGGGAAGATCCCGTTGGGATTAAAGCGGAAGGTTTTGAGGATTGTGGTGACTGGTGGTGCTGGTTTTGTTGGTAGTCATTTAGTGGATCGTTTGATTGCGAGAGGTGATAGTGTGATCGTCGTTGATAATTTCTTCACCGGACGGAAAGAGAACGTTATGCATCATTTTGGTAACCCTAGGTTTGAGCTTATTAGACATGATGTTGTTGAGCCACTTTTGCTTG-AAGTTGACCAGATCTATCATCTC</genome_strand>
        <mrna_strand>CTTTTCTCTCTC-TTTT-AACCCAATTTTGAGAGAA-AGAAA-AATCATATAATGGCTTCTGAATTGATCTACCGCGGACCGGAATCACTTCCGGTTCCCGACAGTTACACTCCCAAACCACACAAACCATGGTTTACTGTAATTCGTCCCCTTCGTTACTTGCTACGAGAACAGAGAATCGTTTTTCTATTCACAGGCATTGCTATCGCTTCTCTAATTTTTGCCTTTTTACCTTCTTCTCG-T--TCCGGAGGATCGAGCTACGCAAACACCGGGATCTACGATTCGTACTTGCCGTCGGAGTCGACTCAGTCTCAGGTGGCTCACCGGATTATCTATCAGAATCGGGTCGGGTTCGGGTCGTTTAATTCCGGTGGGAAGATCCCGTTGGGATTGCAGCGGAAGAGTTTGAGGATCGTGGTGACTGGTGGTGCTGGTTTTGTAGGTAGTCATCTTGTGGACCGTTTGATTGCGAGAGGTGATAGCGTCATCGTCGTTGATAATTTCTTTACCGGACGGAAAGAGAATGTTATGCATCATTTTGGTAACCCTAGGTTTGAGCTTATTAGACATGATGTTGTTGAGCCACTTTTGCTTGAAAGTTGACCAGATCTATCATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E326028" ref_strand="+" ref_description="SGN-E326028 [cTOD-1-M15]">
      <seq>ttttctctctctttttcaacattattttgagagaagaaaaataaataaatcatgacttccgaattgatttatcgcggaccggaatcagttccggtgaccgacggttacactcccaaaccacataaaccatggtttactgtaattcgtccccttcgttacttgctccgagaacagagaattgtttttctattcgcaggcattgctatcgcttctctaatttttgcttttttaccgtcttctcgttcctccggaggatcgagctacgctaacaccgggatctacgattcgtacttaccgtcggagtcgactgagtctcaggtggctcaccggatgatctatcataatcgggtcgggttcgggtcgattaattccggtgggaagatcccgttgggattaaagcggaaggttttgaggattgtggtgactggtggtgctggttttgttggtagtcatttagtggatcgtttgattgcgagaggtgatagtgtgatcgtcgttgataatttcttcaccggacggaaagagaacgttatgcatcattttggtaaccctaggtttgagcttattagacatgatgttgttgagccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="+" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="85980" stop="87168"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86280" g_stop="86868" g_length="589"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="589" r_length="589" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="+" ref_id="SGN-E326028" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326028" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86280" e_stop="86868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTCTCTCTTTTTCAACACAATTTTGAGAGAAGAAAAATAAATAAATCATGACTTCCGAATTGATTTATCGTGGACCGGAATCAGTTCCGGTGACCGACGGTTACACTCCCAAACCACATAAACCATGGTTTACTGTAATTCGTCCCCTTCGTTACTTGCTCCGAGAACAGAGAATTGTTTTTCTATTCGCAGGCATTGCTATCGCTTCTCTAATTTTTGCTTTTTTACCGTCTTCTCGTTCCTCCGGAGGATCGAGCTACGCTAACACCGGGATCTACGATTCGTACTTACCGTCGGAGTCGACTGAGTCTCAGGTGGCTCACCGGATGATCTATCATAATCGGGTCGGGTTCGGGTCGATTAATTCCGGTGGGAAGATCCCGTTGGGATTAAAGCGGAAGGTTTTGAGGATTGTGGTGACTGGTGGTGCTGGTTTTGTTGGTAGTCATTTAGTGGATCGTTTGATTGCGAGAGGTGATAGTGTGATCGTCGTTGATAATTTCTTCACCGGACGGAAAGAGAACGTTATGCATCATTTTGGTAACCCTAGGTTTGAGCTTATTAGACATGATGTTGTTGAGCCAC</genome_strand>
        <mrna_strand>TTTTCTCTCTCTTTTTCAACATTATTTTGAGAGAAGAAAAATAAATAAATCATGACTTCCGAATTGATTTATCGCGGACCGGAATCAGTTCCGGTGACCGACGGTTACACTCCCAAACCACATAAACCATGGTTTACTGTAATTCGTCCCCTTCGTTACTTGCTCCGAGAACAGAGAATTGTTTTTCTATTCGCAGGCATTGCTATCGCTTCTCTAATTTTTGCTTTTTTACCGTCTTCTCGTTCCTCCGGAGGATCGAGCTACGCTAACACCGGGATCTACGATTCGTACTTACCGTCGGAGTCGACTGAGTCTCAGGTGGCTCACCGGATGATCTATCATAATCGGGTCGGGTTCGGGTCGATTAATTCCGGTGGGAAGATCCCGTTGGGATTAAAGCGGAAGGTTTTGAGGATTGTGGTGACTGGTGGTGCTGGTTTTGTTGGTAGTCATTTAGTGGATCGTTTGATTGCGAGAGGTGATAGTGTGATCGTCGTTGATAATTTCTTCACCGGACGGAAAGAGAACGTTATGCATCATTTTGGTAACCCTAGGTTTGAGCTTATTAGACATGATGTTGTTGAGCCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E558135" ref_strand="+" ref_description="SGN-E558135 [17044]">
      <seq>tctaccgcggaccggaatcacttccggttcccgacagttacactccccaaacacacaaaccatggtttactgtaattcgtccccttcgttacttgctacgagaacagagaatcgtttttctattcacaggcattgctatcgcttctctaatttttgcctttttaccttcttctcgttccggaggatcgagctacgcaaacaccgggatctacgattcgtacttggccgtcggagtcgactcagtctcaggtggctcaccggattatctatcagaatcgggtcgggttcgggtcgtttaattccggtgggaagatcccgttgggattgcagcggaagagtttgaggatcgtggtgactggtggtgctggttttgtaggtagtcatcttgtggaccgtttgattgcgaaaggtgatagcgtcatcgtcgttgataatttctttaccggacggaaagagaatgttatgcatcattttggtaaccctaggtttgagcttattagacatgatgttgttgagccacttttgcttgaagttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="+" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="86049" stop="87183"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86347" g_stop="86883" g_length="537"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="535" r_length="535" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="+" ref_id="SGN-E558135" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E558135" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86347" e_stop="86883"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATCGTGGACCGGAATCAGTTCCGGTGACCGACGGTTACACTCCCAAACCACATAAACCATGGTTTACTGTAATTCGTCCCCTTCGTTACTTGCTCCGAGAACAGAGAATTGTTTTTCTATTCGCAGGCATTGCTATCGCTTCTCTAATTTTTGCTTTTTTACCGTCTTCTCGTTCCTCCGGAGGATCGAGCTACGCTAACACCGGGATCTACGATTCGTACTT-ACCGTCGGAGTCGACTGAGTCTCAGGTGGCTCACCGGATGATCTATCATAATCGGGTCGGGTTCGGGTCGATTAATTCCGGTGGGAAGATCCCGTTGGGATTAAAGCGGAAGGTTTTGAGGATTGTGGTGACTGGTGGTGCTGGTTTTGTTGGTAGTCATTTAGTGGATCGTTTGATTGCGAGAGGTGATAGTGTGATCGTCGTTGATAATTTCTTCACCGGACGGAAAGAGAACGTTATGCATCATTTTGGTAACCCTAGGTTTGAGCTTATTAGACATGATGTTGTTGAGCCACTTTTGCTTGAAGTTG</genome_strand>
        <mrna_strand>TCTACCGCGGACCGGAATCACTTCCGGTTCCCGACAGTTACACTCCCCAAACACACAAACCATGGTTTACTGTAATTCGTCCCCTTCGTTACTTGCTACGAGAACAGAGAATCGTTTTTCTATTCACAGGCATTGCTATCGCTTCTCTAATTTTTGCCTTTTTACCTTCTTCTCG-T--TCCGGAGGATCGAGCTACGCAAACACCGGGATCTACGATTCGTACTTGGCCGTCGGAGTCGACTCAGTCTCAGGTGGCTCACCGGATTATCTATCAGAATCGGGTCGGGTTCGGGTCGTTTAATTCCGGTGGGAAGATCCCGTTGGGATTGCAGCGGAAGAGTTTGAGGATCGTGGTGACTGGTGGTGCTGGTTTTGTAGGTAGTCATCTTGTGGACCGTTTGATTGCGAAAGGTGATAGCGTCATCGTCGTTGATAATTTCTTTACCGGACGGAAAGAGAATGTTATGCATCATTTTGGTAACCCTAGGTTTGAGCTTATTAGACATGATGTTGTTGAGCCACTTTTGCTTGAAGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E408689" ref_strand="+" ref_description="SGN-E408689 [PPI-11-L12]">
      <seq>ccaaacccacaaaccatggtttactgtaattcgtccccttcgttacttgctacgagaacagagaatcgtttttctattcgcaggcattgctatcgcttctctaatttttgcctttttaccttcttctcgttccggaggatcgaactacgcaaacaccgggatctacgattcgtacttaccgtcggagtcgactcagtctcaggtggctcaccggattatctatcagaatcgggtcgggttcgggtcgtttaattccggtgggaagatcccgttgggattgcagcggaagagtttgaggatcgtggtgactggtggtgctggttttgtaggtagtcatcttgtggaccgtttgattgcgagaggtgatagcgtgatcgtcgttgataatttcttcaccggacggaaagagaatgttatgcatcattttggtaaccctaggtttgagcttattagacacgatgttgttgagccacttttgcttgaagttgaccagatctatcatctcgcttgccctgcttctcccgttcattacaagcataatcccgtcaagactattaagactaatgtggtggggactttgaacatgctgggattggctaaaagagtcggtgcgaggtttttgctgacgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="+" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="86092" stop="87428"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86392" g_stop="86951" g_length="560"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="556" r_length="556" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86952" i_stop="87054" i_length="103">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87055" g_stop="87128" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="630" r_length="74" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="+" ref_id="SGN-E408689" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E408689" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86392" e_stop="86951"/>
          <exon e_start="87055" e_stop="87128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAACCACATAAACCATGGTTTACTGTAATTCGTCCCCTTCGTTACTTGCTCCGAGAACAGAGAATTGTTTTTCTATTCGCAGGCATTGCTATCGCTTCTCTAATTTTTGCTTTTTTACCGTCTTCTCGTTCCTCCGGAGGATCGAGCTACGCTAACACCGGGATCTACGATTCGTACTTACCGTCGGAGTCGACTGAGTCTCAGGTGGCTCACCGGATGATCTATCATAATCGGGTCGGGTTCGGGTCGATTAATTCCGGTGGGAAGATCCCGTTGGGATTAAAGCGGAAGGTTTTGAGGATTGTGGTGACTGGTGGTGCTGGTTTTGTTGGTAGTCATTTAGTGGATCGTTTGATTGCGAGAGGTGATAGTGTGATCGTCGTTGATAATTTCTTCACCGGACGGAAAGAGAACGTTATGCATCATTTTGGTAACCCTAGGTTTGAGCTTATTAGACATGATGTTGTTGAGCCACTTTTGCTTGAAGTTGACCAGATCTATCATCTCGCTTGCCCTGCTTCTCCCGTTCATTACAAGCATAATCCCGTCAAAACTATCATATCCTTCTTTTTTAAAAATTATCATTAATTTTAATTACGTGCATAAAATTATATTAAATATATTATTATCATCGTTTCATCCTTGACGGATTAATTTTTACAAGACTAATGTAGTTGGTACTTTGAACATGCTGGGATTGGCTAAAAGAGTCGGTGCGAGGTTTTTGCTAACCAG</genome_strand>
        <mrna_strand>CCAAACC-CACAAACCATGGTTTACTGTAATTCGTCCCCTTCGTTACTTGCTACGAGAACAGAGAATCGTTTTTCTATTCGCAGGCATTGCTATCGCTTCTCTAATTTTTGCCTTTTTACCTTCTTCTCG-T--TCCGGAGGATCGAACTACGCAAACACCGGGATCTACGATTCGTACTTACCGTCGGAGTCGACTCAGTCTCAGGTGGCTCACCGGATTATCTATCAGAATCGGGTCGGGTTCGGGTCGTTTAATTCCGGTGGGAAGATCCCGTTGGGATTGCAGCGGAAGAGTTTGAGGATCGTGGTGACTGGTGGTGCTGGTTTTGTAGGTAGTCATCTTGTGGACCGTTTGATTGCGAGAGGTGATAGCGTGATCGTCGTTGATAATTTCTTCACCGGACGGAAAGAGAATGTTATGCATCATTTTGGTAACCCTAGGTTTGAGCTTATTAGACACGATGTTGTTGAGCCACTTTTGCTTGAAGTTGACCAGATCTATCATCTCGCTTGCCCTGCTTCTCCCGTTCATTACAAGCATAATCCCGTCAAGACTATT.......................................................................................................AAGACTAATGTGGTGGGGACTTTGAACATGCTGGGATTGGCTAAAAGAGTCGGTGCGAGGTTTTTGCTGACGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E417269" ref_strand="+" ref_description="SGN-E417269 [STM-25-I21]">
      <seq>aaccacacaaaccatggtttactgtaattcgtccccttcgttacttgctacgagaacagagaatcgtttttctattcgcaggcattgctatcgcttctctaatttttgcctttttaccttcttctcgttccggaggatcgaactacgcaaacaccgggatctacgattcgtacttaccgtcggagtcgactcagtctcaggtggctcaccggattatctatcagaatcgggtcgggttcgggtcgtttaattccggtgggaagatcccgttgggattgcagcggaagagtttgaggatcgtggtgactggtggtgctggttttgtaggtagtcatcttgtggaccgtttgattgcgagaggtgatagcgtgatcgtcgttgataatttcttcaccggacggaaagagaatgttatgcatcattttggtaaccctaggtttgagcttattagacacgatgttgttgagccacttttgcttgaagttgaccagatctatcatctcgcttgccctgcttctcccgttcattacaagcataatcccgtcaagactattaagactaatgtggtggggactttgaacatgctgggattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="+" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="86095" stop="87393"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86395" g_stop="86951" g_length="557"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86952" i_stop="87054" i_length="103">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87055" g_stop="87093" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="593" r_length="39" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="+" ref_id="SGN-E417269" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E417269" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86395" e_stop="86951"/>
          <exon e_start="87055" e_stop="87093"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCACATAAACCATGGTTTACTGTAATTCGTCCCCTTCGTTACTTGCTCCGAGAACAGAGAATTGTTTTTCTATTCGCAGGCATTGCTATCGCTTCTCTAATTTTTGCTTTTTTACCGTCTTCTCGTTCCTCCGGAGGATCGAGCTACGCTAACACCGGGATCTACGATTCGTACTTACCGTCGGAGTCGACTGAGTCTCAGGTGGCTCACCGGATGATCTATCATAATCGGGTCGGGTTCGGGTCGATTAATTCCGGTGGGAAGATCCCGTTGGGATTAAAGCGGAAGGTTTTGAGGATTGTGGTGACTGGTGGTGCTGGTTTTGTTGGTAGTCATTTAGTGGATCGTTTGATTGCGAGAGGTGATAGTGTGATCGTCGTTGATAATTTCTTCACCGGACGGAAAGAGAACGTTATGCATCATTTTGGTAACCCTAGGTTTGAGCTTATTAGACATGATGTTGTTGAGCCACTTTTGCTTGAAGTTGACCAGATCTATCATCTCGCTTGCCCTGCTTCTCCCGTTCATTACAAGCATAATCCCGTCAAAACTATCATATCCTTCTTTTTTAAAAATTATCATTAATTTTAATTACGTGCATAAAATTATATTAAATATATTATTATCATCGTTTCATCCTTGACGGATTAATTTTTACAAGACTAATGTAGTTGGTACTTTGAACATGCTGGGATTG</genome_strand>
        <mrna_strand>AACCACACAAACCATGGTTTACTGTAATTCGTCCCCTTCGTTACTTGCTACGAGAACAGAGAATCGTTTTTCTATTCGCAGGCATTGCTATCGCTTCTCTAATTTTTGCCTTTTTACCTTCTTCTCG-T--TCCGGAGGATCGAACTACGCAAACACCGGGATCTACGATTCGTACTTACCGTCGGAGTCGACTCAGTCTCAGGTGGCTCACCGGATTATCTATCAGAATCGGGTCGGGTTCGGGTCGTTTAATTCCGGTGGGAAGATCCCGTTGGGATTGCAGCGGAAGAGTTTGAGGATCGTGGTGACTGGTGGTGCTGGTTTTGTAGGTAGTCATCTTGTGGACCGTTTGATTGCGAGAGGTGATAGCGTGATCGTCGTTGATAATTTCTTCACCGGACGGAAAGAGAATGTTATGCATCATTTTGGTAACCCTAGGTTTGAGCTTATTAGACACGATGTTGTTGAGCCACTTTTGCTTGAAGTTGACCAGATCTATCATCTCGCTTGCCCTGCTTCTCCCGTTCATTACAAGCATAATCCCGTCAAGACTATT.......................................................................................................AAGACTAATGTGGTGGGGACTTTGAACATGCTGGGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E445836" ref_strand="+" ref_description="SGN-E445836 [cSTA-19-A23]">
      <seq>aaccacacaaaccatggtttactgtaattcgtccccttcgttacttgctacgagaacagagaatcgtttttctattcgcaggcattgctatcgcttctctaatttttgcctttttaccttcttctcgttccggaggatcgaactacgcaaacaccgggatctacgattcgtacttaccgtcggagtcgactcagtctcaggtggctcaccggattatctatcagaatcgggtcgggttcgggtcgtttaattccggtgggaagatcccgttgggattgcagcggaagagtttgaggatcgtggtgactggtggtgctggttttgtaggtagtcatcttgtggaccgtttgattgcgagaggtgatagcgtgatcgtcgttgataatttcttcaccggacggaaagagaatgttatgcatcattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="+" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="86095" stop="87121"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86395" g_stop="86821" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="424" r_length="424" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="+" ref_id="SGN-E445836" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E445836" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86395" e_stop="86821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCACATAAACCATGGTTTACTGTAATTCGTCCCCTTCGTTACTTGCTCCGAGAACAGAGAATTGTTTTTCTATTCGCAGGCATTGCTATCGCTTCTCTAATTTTTGCTTTTTTACCGTCTTCTCGTTCCTCCGGAGGATCGAGCTACGCTAACACCGGGATCTACGATTCGTACTTACCGTCGGAGTCGACTGAGTCTCAGGTGGCTCACCGGATGATCTATCATAATCGGGTCGGGTTCGGGTCGATTAATTCCGGTGGGAAGATCCCGTTGGGATTAAAGCGGAAGGTTTTGAGGATTGTGGTGACTGGTGGTGCTGGTTTTGTTGGTAGTCATTTAGTGGATCGTTTGATTGCGAGAGGTGATAGTGTGATCGTCGTTGATAATTTCTTCACCGGACGGAAAGAGAACGTTATGCATCATTT</genome_strand>
        <mrna_strand>AACCACACAAACCATGGTTTACTGTAATTCGTCCCCTTCGTTACTTGCTACGAGAACAGAGAATCGTTTTTCTATTCGCAGGCATTGCTATCGCTTCTCTAATTTTTGCCTTTTTACCTTCTTCTCG-T--TCCGGAGGATCGAACTACGCAAACACCGGGATCTACGATTCGTACTTACCGTCGGAGTCGACTCAGTCTCAGGTGGCTCACCGGATTATCTATCAGAATCGGGTCGGGTTCGGGTCGTTTAATTCCGGTGGGAAGATCCCGTTGGGATTGCAGCGGAAGAGTTTGAGGATCGTGGTGACTGGTGGTGCTGGTTTTGTAGGTAGTCATCTTGTGGACCGTTTGATTGCGAGAGGTGATAGCGTGATCGTCGTTGATAATTTCTTCACCGGACGGAAAGAGAATGTTATGCATCATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E408688" ref_strand="+" ref_description="SGN-E408688 [PPI-11-L8]">
      <seq>cgagaacagagaatcgtttttctattcgcaggcattgctatcgcttctctaatttttgcctttttaccttcttctcgttccggaggatcgaactacgcaaacaccgggatctacgattcgtacttaccgtcggagtcgactcagtctcaggtggctcaccggattatctatcagaatcgggtcgggttcgggtcgtttaattccggtgggaagatcccgttgggattgcagcggaagagtttgaggatcgtggtgactggtggtgctggttttgtaggtagtcatcttgtggaccgtttgattgcgagaggtgatagcgtgatcgtcgttgataatttcttcaccggacggaaagagaatgttatgcatcattttggtaaccctaggtttgagcttattagacacgatgttgttgagccacttttgcttgaagttgaccagatctatcatctcgcttgccctgcttctcccgttcattacaagcataatcccgtcaagactattaagactaatgtggtggggactttgaacatgctgggattggctaaaagagtcggtgcgaggtttttgctgacgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="+" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="86145" stop="87428"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86445" g_stop="86951" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="504" r_length="504" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86952" i_stop="87054" i_length="103">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87055" g_stop="87128" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="578" r_length="74" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="+" ref_id="SGN-E408688" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E408688" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86445" e_stop="86951"/>
          <exon e_start="87055" e_stop="87128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGAACAGAGAATTGTTTTTCTATTCGCAGGCATTGCTATCGCTTCTCTAATTTTTGCTTTTTTACCGTCTTCTCGTTCCTCCGGAGGATCGAGCTACGCTAACACCGGGATCTACGATTCGTACTTACCGTCGGAGTCGACTGAGTCTCAGGTGGCTCACCGGATGATCTATCATAATCGGGTCGGGTTCGGGTCGATTAATTCCGGTGGGAAGATCCCGTTGGGATTAAAGCGGAAGGTTTTGAGGATTGTGGTGACTGGTGGTGCTGGTTTTGTTGGTAGTCATTTAGTGGATCGTTTGATTGCGAGAGGTGATAGTGTGATCGTCGTTGATAATTTCTTCACCGGACGGAAAGAGAACGTTATGCATCATTTTGGTAACCCTAGGTTTGAGCTTATTAGACATGATGTTGTTGAGCCACTTTTGCTTGAAGTTGACCAGATCTATCATCTCGCTTGCCCTGCTTCTCCCGTTCATTACAAGCATAATCCCGTCAAAACTATCATATCCTTCTTTTTTAAAAATTATCATTAATTTTAATTACGTGCATAAAATTATATTAAATATATTATTATCATCGTTTCATCCTTGACGGATTAATTTTTACAAGACTAATGTAGTTGGTACTTTGAACATGCTGGGATTGGCTAAAAGAGTCGGTGCGAGGTTTTTGCTAACCAG</genome_strand>
        <mrna_strand>CGAGAACAGAGAATCGTTTTTCTATTCGCAGGCATTGCTATCGCTTCTCTAATTTTTGCCTTTTTACCTTCTTCTCGTTCC---GGAGGATCGAACTACGCAAACACCGGGATCTACGATTCGTACTTACCGTCGGAGTCGACTCAGTCTCAGGTGGCTCACCGGATTATCTATCAGAATCGGGTCGGGTTCGGGTCGTTTAATTCCGGTGGGAAGATCCCGTTGGGATTGCAGCGGAAGAGTTTGAGGATCGTGGTGACTGGTGGTGCTGGTTTTGTAGGTAGTCATCTTGTGGACCGTTTGATTGCGAGAGGTGATAGCGTGATCGTCGTTGATAATTTCTTCACCGGACGGAAAGAGAATGTTATGCATCATTTTGGTAACCCTAGGTTTGAGCTTATTAGACACGATGTTGTTGAGCCACTTTTGCTTGAAGTTGACCAGATCTATCATCTCGCTTGCCCTGCTTCTCCCGTTCATTACAAGCATAATCCCGTCAAGACTATT.......................................................................................................AAGACTAATGTGGTGGGGACTTTGAACATGCTGGGATTGGCTAAAAGAGTCGGTGCGAGGTTTTTGCTGACGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E331175" ref_strand="+" ref_description="SGN-E331175 [cTOD-6-N18]">
      <seq>aggatcgagctacgctaacaccgggatctacgattcgtacttaccgtcggagtcgactgagtctcaagtggctcaccggatgatctatcataatcgggtcgggttcgggtcgattaattccggtgggaagatcccgttgggattaaagcggaaggttttgaggattgtggtgactggtggtgctggttttgttggtagtcatttagtggatcgtttgattgcgagaggtgatagtgtgatcgtcgttgataatttcttcaccggacggaaagagaacgttatgcatcattttggtaaccctaggtttgagcttattagacatgatgttgttgagccacttttgcttgaagttgaccagatctatcatctcgcttgccctgcttctcccgttcattacaagcataatcccgtcaaaactatcaagactaatgtagttggtactttgaacatgctgggattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="+" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="86231" stop="87393"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86531" g_stop="86951" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="421" r_length="421" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86952" i_stop="87054" i_length="103">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87055" g_stop="87093" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="460" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="+" ref_id="SGN-E331175" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331175" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86531" e_stop="86951"/>
          <exon e_start="87055" e_stop="87093"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGATCGAGCTACGCTAACACCGGGATCTACGATTCGTACTTACCGTCGGAGTCGACTGAGTCTCAGGTGGCTCACCGGATGATCTATCATAATCGGGTCGGGTTCGGGTCGATTAATTCCGGTGGGAAGATCCCGTTGGGATTAAAGCGGAAGGTTTTGAGGATTGTGGTGACTGGTGGTGCTGGTTTTGTTGGTAGTCATTTAGTGGATCGTTTGATTGCGAGAGGTGATAGTGTGATCGTCGTTGATAATTTCTTCACCGGACGGAAAGAGAACGTTATGCATCATTTTGGTAACCCTAGGTTTGAGCTTATTAGACATGATGTTGTTGAGCCACTTTTGCTTGAAGTTGACCAGATCTATCATCTCGCTTGCCCTGCTTCTCCCGTTCATTACAAGCATAATCCCGTCAAAACTATCATATCCTTCTTTTTTAAAAATTATCATTAATTTTAATTACGTGCATAAAATTATATTAAATATATTATTATCATCGTTTCATCCTTGACGGATTAATTTTTACAAGACTAATGTAGTTGGTACTTTGAACATGCTGGGATTG</genome_strand>
        <mrna_strand>AGGATCGAGCTACGCTAACACCGGGATCTACGATTCGTACTTACCGTCGGAGTCGACTGAGTCTCAAGTGGCTCACCGGATGATCTATCATAATCGGGTCGGGTTCGGGTCGATTAATTCCGGTGGGAAGATCCCGTTGGGATTAAAGCGGAAGGTTTTGAGGATTGTGGTGACTGGTGGTGCTGGTTTTGTTGGTAGTCATTTAGTGGATCGTTTGATTGCGAGAGGTGATAGTGTGATCGTCGTTGATAATTTCTTCACCGGACGGAAAGAGAACGTTATGCATCATTTTGGTAACCCTAGGTTTGAGCTTATTAGACATGATGTTGTTGAGCCACTTTTGCTTGAAGTTGACCAGATCTATCATCTCGCTTGCCCTGCTTCTCCCGTTCATTACAAGCATAATCCCGTCAAAACTATC.......................................................................................................AAGACTAATGTAGTTGGTACTTTGAACATGCTGGGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E245750" ref_strand="+" ref_description="SGN-E245750 [cLEF-48-O24]">
      <seq>tcgtacttaccgtcggagtcgactgagtctcaggtggctcaccggatgatctatcataatcgggtcgggttcgggtcgattaattccggtgggaagatcccgttgggattaaagcggaaggttttgaggattgtggtgactggtggtgctggttttgttggtagtcatttagtggatcgtttgattgcgagaggtgatagtgtgatcgtcgttgataatttcttcaccggacggaaagagaacgttatgcatcattttggtaaccctaggtttgagcttattagacatgatgttgttgagccacttttgcttgaagttgaccagatctatcatctcgcttgccctgcttctcccgttcattacaagcataatcccgtcaaaactatcaagactaatgtagttggtactttgaacatgctgggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="+" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="86265" stop="87391"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86565" g_stop="86951" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="387" r_length="387" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86952" i_stop="87054" i_length="103">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87055" g_stop="87091" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="424" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="+" ref_id="SGN-E245750" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245750" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86565" e_stop="86951"/>
          <exon e_start="87055" e_stop="87091"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTACTTACCGTCGGAGTCGACTGAGTCTCAGGTGGCTCACCGGATGATCTATCATAATCGGGTCGGGTTCGGGTCGATTAATTCCGGTGGGAAGATCCCGTTGGGATTAAAGCGGAAGGTTTTGAGGATTGTGGTGACTGGTGGTGCTGGTTTTGTTGGTAGTCATTTAGTGGATCGTTTGATTGCGAGAGGTGATAGTGTGATCGTCGTTGATAATTTCTTCACCGGACGGAAAGAGAACGTTATGCATCATTTTGGTAACCCTAGGTTTGAGCTTATTAGACATGATGTTGTTGAGCCACTTTTGCTTGAAGTTGACCAGATCTATCATCTCGCTTGCCCTGCTTCTCCCGTTCATTACAAGCATAATCCCGTCAAAACTATCATATCCTTCTTTTTTAAAAATTATCATTAATTTTAATTACGTGCATAAAATTATATTAAATATATTATTATCATCGTTTCATCCTTGACGGATTAATTTTTACAAGACTAATGTAGTTGGTACTTTGAACATGCTGGGAT</genome_strand>
        <mrna_strand>TCGTACTTACCGTCGGAGTCGACTGAGTCTCAGGTGGCTCACCGGATGATCTATCATAATCGGGTCGGGTTCGGGTCGATTAATTCCGGTGGGAAGATCCCGTTGGGATTAAAGCGGAAGGTTTTGAGGATTGTGGTGACTGGTGGTGCTGGTTTTGTTGGTAGTCATTTAGTGGATCGTTTGATTGCGAGAGGTGATAGTGTGATCGTCGTTGATAATTTCTTCACCGGACGGAAAGAGAACGTTATGCATCATTTTGGTAACCCTAGGTTTGAGCTTATTAGACATGATGTTGTTGAGCCACTTTTGCTTGAAGTTGACCAGATCTATCATCTCGCTTGCCCTGCTTCTCCCGTTCATTACAAGCATAATCCCGTCAAAACTATC.......................................................................................................AAGACTAATGTAGTTGGTACTTTGAACATGCTGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E265583" ref_strand="+" ref_description="SGN-E265583 [cLEI-14-L10]">
      <seq>ctcaggtggctcaccggatgatctatcataatcgggtcgggttcgggtcgattaattccggtgggaagatcccgttgggattaaagcggaaggttttgaggattgtggtgactggtggtgctggttttgttggtagtcatttagtggatcgtttgattgcgagaggtgatagtgtgatcgtcgttgataatttcttcaccggacggaaagagaacgttatgcatcattttggtaaccctaggtttgagcttattagacatgatgttgttgagccacttttgcttgaagttgaccagatctatcatctcgcttgccctgcttctcccgttcattacaagcataatcccgtcaaaactatcaagactaatgtagttggtactttgaacatgctgggattggctaaaagagtcggtgcgaggtttttgctaaccagcactagcgaagtatatggtgatcctttagaacatccacagaaggagacatactggggcaatgttaatcctattggtgtccgaagttgctacgatgagggaaaacgaacagctgaaacattgaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="+" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="86293" stop="89013"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86593" g_stop="86951" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="359" r_length="359" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86952" i_stop="87054" i_length="103">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87055" g_stop="87202" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="507" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87203" i_stop="88663" i_length="1461">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88664" g_stop="88713" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="557" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="+" ref_id="SGN-E265583" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265583" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86593" e_stop="86951"/>
          <exon e_start="87055" e_stop="87202"/>
          <exon e_start="88664" e_stop="88713"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAGGTGGCTCACCGGATGATCTATCATAATCGGGTCGGGTTCGGGTCGATTAATTCCGGTGGGAAGATCCCGTTGGGATTAAAGCGGAAGGTTTTGAGGATTGTGGTGACTGGTGGTGCTGGTTTTGTTGGTAGTCATTTAGTGGATCGTTTGATTGCGAGAGGTGATAGTGTGATCGTCGTTGATAATTTCTTCACCGGACGGAAAGAGAACGTTATGCATCATTTTGGTAACCCTAGGTTTGAGCTTATTAGACATGATGTTGTTGAGCCACTTTTGCTTGAAGTTGACCAGATCTATCATCTCGCTTGCCCTGCTTCTCCCGTTCATTACAAGCATAATCCCGTCAAAACTATCATATCCTTCTTTTTTAAAAATTATCATTAATTTTAATTACGTGCATAAAATTATATTAAATATATTATTATCATCGTTTCATCCTTGACGGATTAATTTTTACAAGACTAATGTAGTTGGTACTTTGAACATGCTGGGATTGGCTAAAAGAGTCGGTGCGAGGTTTTTGCTAACCAGCACTAGCGAAGTATATGGTGATCCTTTAGAACATCCACAGAAGGAGACATACTGGGGCAATGTTAATCCTATTGGTAAGATTTTTTAATTTCTTTTTCTATTTTCTATTTTAGTTATTTTCTTTTTAAAAAAATTCTTCAAAATCTCTTAATTTTAATTTTCACATTATATATTTTATTAAAATGCACGAATAAATTGAAACGAAAGAATTACGATGCACGTTAGCTATGGTCTTTTGATGGTTCATGGTAAAAATGTGGAGCCACGTGTTGAACGATGATGAGTGCTAATGACGTTTCTGTCCTTAGATCGGGTCGGGAAAATTATTTTAATTTAATTTTTTTTTGTCAACGATGATACCGTGATTTGCGGGTCCGGCCGCTTCATTCACCTATCTTTATGTCTTTCATTTTAATTCAATTGGCGCGCCCTTTTCTATTCAATCTTTTCTCTCTTTTATTTTGTCCTTGAAAAATTAAATTAGCTTAAGTAATTACTTTCTTGTCTTTTTCTTTTTTTCCTTTTATTTCCTTTTGAGTCTTTTGATATTTCACGTTTCGATTTGTTTGTTTAATTTTTTATTTTGTTTTAAAAAAAAGTTATGCCATGTTTAAGATAATAAAGATATAAAAATATTTTAGTATATTTCACTTCTTTCGTACGATAATAATAGTTGTTCACTATGTTATTTTGGAATGTTCAATAATATTTTTTCGTTTTATCAAATAATAGATAATTTTTGAATGACCTAGTTTGACTTGGAACGGAGTTTAAAAAAATAAAACAGACATTTTAAACTTGTGATTCTAAATTAAAGTTATGTCTAATGTACAAAAATGTCATTCATGCCACGTGGAAAGTTAAAGTGAAATTGTTGCCAAAAAAGCAAAGAGATTATTCTTTTGAATCAGACTAAAAAGGAAACAATGTTATTCTTTTTGAAACGGATGGAATATTTATTATATTCAAAGGGTGATACAGTAAAATTATTTTTTTATTTATATTTTCTATAGTAGACAAGTATTATTGTACATATTTTGATTTAAGATCATATAATTTAAAAAAATTGCTTTGTTTTGGTAGACTCGGTATTAGTCAAAATATGAAAAATAAATTGACAAAACGGAGGAAGTTACCATGACTATAATATTATCAATGTGATTCCACAAATGGAGTCTGTTGAACTCTTCCTTTACATGAAGGGAATGAATGCCTTAATGGAATGGAATCCGGGATCCAAGTAGATTAGGTTAAGGCAAGTATGAGTAGAGACTCTTTTCGATAACTTTGAAAAGCTTTATAACAACAACCAGTGAAAGAAATATAATAGTGAAACAAATTGTGTTTGTTTAACTACGAAGAAAGAGAAATAAATATAGTTGGACAGGTAGTAGTTGAATTATTATTGAATTTGTATAGAATATTAGATCTGAAATGTAACTTTAGTTTCCCGCAGACTAAGGAAGATGGTCTGTTTTGCCTTTTGTCTATTTTAATGTAAATGGTGGGGTTAACTGACCAAGAAAGTAAAACAGGTGTCCGAAGTTGCTACGATGAGGGAAAACGAACAGCTGAAACATTGACA</genome_strand>
        <mrna_strand>CTCAGGTGGCTCACCGGATGATCTATCATAATCGGGTCGGGTTCGGGTCGATTAATTCCGGTGGGAAGATCCCGTTGGGATTAAAGCGGAAGGTTTTGAGGATTGTGGTGACTGGTGGTGCTGGTTTTGTTGGTAGTCATTTAGTGGATCGTTTGATTGCGAGAGGTGATAGTGTGATCGTCGTTGATAATTTCTTCACCGGACGGAAAGAGAACGTTATGCATCATTTTGGTAACCCTAGGTTTGAGCTTATTAGACATGATGTTGTTGAGCCACTTTTGCTTGAAGTTGACCAGATCTATCATCTCGCTTGCCCTGCTTCTCCCGTTCATTACAAGCATAATCCCGTCAAAACTATC.......................................................................................................AAGACTAATGTAGTTGGTACTTTGAACATGCTGGGATTGGCTAAAAGAGTCGGTGCGAGGTTTTTGCTAACCAGCACTAGCGAAGTATATGGTGATCCTTTAGAACATCCACAGAAGGAGACATACTGGGGCAATGTTAATCCTATTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCCGAAGTTGCTACGATGAGGGAAAACGAACAGCTGAAACATTGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E210410" ref_strand="+" ref_description="SGN-E210410 [cLEC-35-A11]">
      <seq>tatcataatcgggtcgggttcgggtcgattaattccggtgggaagatcccgttgggattaaagcggaaggttttgaggattgtggtgactggtggtgctggttttgttggtagtcatttagtggatcgtttgattgcgagaggtgatagtgtgatcgtcgttgataatttcttcaccggacggaaagagaacgttatgcatcattttggtaaccctaggtttgagcttattagacatgatgttgttgagccacttttgcttgaagttgaccagatctatcatctcgcttgccctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="+" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="86316" stop="87212"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86616" g_stop="86912" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="+" ref_id="SGN-E210410" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>297</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210410" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86616" e_stop="86912"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCATAATCGGGTCGGGTTCGGGTCGATTAATTCCGGTGGGAAGATCCCGTTGGGATTAAAGCGGAAGGTTTTGAGGATTGTGGTGACTGGTGGTGCTGGTTTTGTTGGTAGTCATTTAGTGGATCGTTTGATTGCGAGAGGTGATAGTGTGATCGTCGTTGATAATTTCTTCACCGGACGGAAAGAGAACGTTATGCATCATTTTGGTAACCCTAGGTTTGAGCTTATTAGACATGATGTTGTTGAGCCACTTTTGCTTGAAGTTGACCAGATCTATCATCTCGCTTGCCCTGCT</genome_strand>
        <mrna_strand>TATCATAATCGGGTCGGGTTCGGGTCGATTAATTCCGGTGGGAAGATCCCGTTGGGATTAAAGCGGAAGGTTTTGAGGATTGTGGTGACTGGTGGTGCTGGTTTTGTTGGTAGTCATTTAGTGGATCGTTTGATTGCGAGAGGTGATAGTGTGATCGTCGTTGATAATTTCTTCACCGGACGGAAAGAGAACGTTATGCATCATTTTGGTAACCCTAGGTTTGAGCTTATTAGACATGATGTTGTTGAGCCACTTTTGCTTGAAGTTGACCAGATCTATCATCTCGCTTGCCCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E304233" ref_strand="+" ref_description="SGN-E304233 [cLEX-6-N19]">
      <seq>cggtgggaagatcccgttgggattaaagcggaaggttttgaggattgtggtgactggtggtgctggttttgttggtagtcatttagtggatcgtttgattgcgagaggtgatagtgtgatcgtcgttgataatttcttcaccggacggaaagagaacgttatgcatcattttggtaaccctaggtttgagcttattagacatgatgttgttgagccacttttgcttgaagttgaccagatctatcatctcgcttgccctgcttctcccgttcattacaagcataatcccgtcaaaactatcaagactaatgtagttggtactttgaacatgctgggattggctaaaagagtcggtgcgaggtttttgctaaccagcactagcgaagtatatggtgatcctttagaacatccacagaaggagacatactggggcaatgttaatcctattggtgtccgaagttgctacgatgagggaaaacgaacagctgaaacattgacaatggattatcacagaggtgcagaagttgaggtgagaatcgctaggatctttaacacttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="+" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="86351" stop="89626"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86651" g_stop="86951" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86952" i_stop="87054" i_length="103">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87055" g_stop="87202" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="449" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87203" i_stop="88663" i_length="1461">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88664" g_stop="88743" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="529" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88744" i_stop="89296" i_length="553">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89297" g_stop="89326" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="559" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="+" ref_id="SGN-E304233" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304233" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86651" e_stop="86951"/>
          <exon e_start="87055" e_stop="87202"/>
          <exon e_start="88664" e_stop="88743"/>
          <exon e_start="89297" e_stop="89326"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGTGGGAAGATCCCGTTGGGATTAAAGCGGAAGGTTTTGAGGATTGTGGTGACTGGTGGTGCTGGTTTTGTTGGTAGTCATTTAGTGGATCGTTTGATTGCGAGAGGTGATAGTGTGATCGTCGTTGATAATTTCTTCACCGGACGGAAAGAGAACGTTATGCATCATTTTGGTAACCCTAGGTTTGAGCTTATTAGACATGATGTTGTTGAGCCACTTTTGCTTGAAGTTGACCAGATCTATCATCTCGCTTGCCCTGCTTCTCCCGTTCATTACAAGCATAATCCCGTCAAAACTATCATATCCTTCTTTTTTAAAAATTATCATTAATTTTAATTACGTGCATAAAATTATATTAAATATATTATTATCATCGTTTCATCCTTGACGGATTAATTTTTACAAGACTAATGTAGTTGGTACTTTGAACATGCTGGGATTGGCTAAAAGAGTCGGTGCGAGGTTTTTGCTAACCAGCACTAGCGAAGTATATGGTGATCCTTTAGAACATCCACAGAAGGAGACATACTGGGGCAATGTTAATCCTATTGGTAAGATTTTTTAATTTCTTTTTCTATTTTCTATTTTAGTTATTTTCTTTTTAAAAAAATTCTTCAAAATCTCTTAATTTTAATTTTCACATTATATATTTTATTAAAATGCACGAATAAATTGAAACGAAAGAATTACGATGCACGTTAGCTATGGTCTTTTGATGGTTCATGGTAAAAATGTGGAGCCACGTGTTGAACGATGATGAGTGCTAATGACGTTTCTGTCCTTAGATCGGGTCGGGAAAATTATTTTAATTTAATTTTTTTTTGTCAACGATGATACCGTGATTTGCGGGTCCGGCCGCTTCATTCACCTATCTTTATGTCTTTCATTTTAATTCAATTGGCGCGCCCTTTTCTATTCAATCTTTTCTCTCTTTTATTTTGTCCTTGAAAAATTAAATTAGCTTAAGTAATTACTTTCTTGTCTTTTTCTTTTTTTCCTTTTATTTCCTTTTGAGTCTTTTGATATTTCACGTTTCGATTTGTTTGTTTAATTTTTTATTTTGTTTTAAAAAAAAGTTATGCCATGTTTAAGATAATAAAGATATAAAAATATTTTAGTATATTTCACTTCTTTCGTACGATAATAATAGTTGTTCACTATGTTATTTTGGAATGTTCAATAATATTTTTTCGTTTTATCAAATAATAGATAATTTTTGAATGACCTAGTTTGACTTGGAACGGAGTTTAAAAAAATAAAACAGACATTTTAAACTTGTGATTCTAAATTAAAGTTATGTCTAATGTACAAAAATGTCATTCATGCCACGTGGAAAGTTAAAGTGAAATTGTTGCCAAAAAAGCAAAGAGATTATTCTTTTGAATCAGACTAAAAAGGAAACAATGTTATTCTTTTTGAAACGGATGGAATATTTATTATATTCAAAGGGTGATACAGTAAAATTATTTTTTTATTTATATTTTCTATAGTAGACAAGTATTATTGTACATATTTTGATTTAAGATCATATAATTTAAAAAAATTGCTTTGTTTTGGTAGACTCGGTATTAGTCAAAATATGAAAAATAAATTGACAAAACGGAGGAAGTTACCATGACTATAATATTATCAATGTGATTCCACAAATGGAGTCTGTTGAACTCTTCCTTTACATGAAGGGAATGAATGCCTTAATGGAATGGAATCCGGGATCCAAGTAGATTAGGTTAAGGCAAGTATGAGTAGAGACTCTTTTCGATAACTTTGAAAAGCTTTATAACAACAACCAGTGAAAGAAATATAATAGTGAAACAAATTGTGTTTGTTTAACTACGAAGAAAGAGAAATAAATATAGTTGGACAGGTAGTAGTTGAATTATTATTGAATTTGTATAGAATATTAGATCTGAAATGTAACTTTAGTTTCCCGCAGACTAAGGAAGATGGTCTGTTTTGCCTTTTGTCTATTTTAATGTAAATGGTGGGGTTAACTGACCAAGAAAGTAAAACAGGTGTCCGAAGTTGCTACGATGAGGGAAAACGAACAGCTGAAACATTGACAATGGATTATCACAGAGGTGCAGAAGTTGAGGTTTGTGTTTTTTTTTTAACCCATAGTCCAGATTAATGTTTACTGTACTTGTTGATAATGTAGACTTCATAGATACTGTAATTGTAACTCCTCTAGTACTACATTCTCAAGAAATATAGGACATTTGTCACCTAACGGTGTGGCCTACTGGTCAATGAAGCAGGATGAGAACCATGAGTTCTCGAGTTTAAATTCCAAGAGATACAAAAACACAAGTGATATCTTACCATTTGTTCACTACGTGACACATGTTGTTGGTGTGAGGTGACAGGTTTCTTGTGTAATTAGTCGAGGTGCGAGGAAAAATAAAATTAACAATCACTCTGGAGCCAACTGTTTTATTCCTTATTGCGCATGTACTTGATCATCGATAAATGTACTTTGTATCTAGTGTTTTTAAATAATGTACTATCGGTGTAGTTTAATCTATGATAGCAAGTTAGCTACCGTTTTTATCAGGTTACTAATTACTGTTTATCATAGATATGTATCTGAAATTACCTGTTAAGTAATTTGCTGGTAAAATTGTGTCGATGTACCTATGTTGTTACAGGTGAGAATCGCTAGGATCTTTAACACTTAT</genome_strand>
        <mrna_strand>CGGTGGGAAGATCCCGTTGGGATTAAAGCGGAAGGTTTTGAGGATTGTGGTGACTGGTGGTGCTGGTTTTGTTGGTAGTCATTTAGTGGATCGTTTGATTGCGAGAGGTGATAGTGTGATCGTCGTTGATAATTTCTTCACCGGACGGAAAGAGAACGTTATGCATCATTTTGGTAACCCTAGGTTTGAGCTTATTAGACATGATGTTGTTGAGCCACTTTTGCTTGAAGTTGACCAGATCTATCATCTCGCTTGCCCTGCTTCTCCCGTTCATTACAAGCATAATCCCGTCAAAACTATC.......................................................................................................AAGACTAATGTAGTTGGTACTTTGAACATGCTGGGATTGGCTAAAAGAGTCGGTGCGAGGTTTTTGCTAACCAGCACTAGCGAAGTATATGGTGATCCTTTAGAACATCCACAGAAGGAGACATACTGGGGCAATGTTAATCCTATTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCCGAAGTTGCTACGATGAGGGAAAACGAACAGCTGAAACATTGACAATGGATTATCACAGAGGTGCAGAAGTTGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAATCGCTAGGATCTTTAACACTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E603833" ref_strand="+" ref_description="SGN-E603833 [67021]">
      <seq>atcccgttgggattgcagcggaagagtttgaggatcgtggtgactggtggtgctggttttgtaggtagtcatcttgtggaccgtttgattgcgagaggtgatagcgtcatcgtcgttgataatttctttaccggacggaaagagaatgttatgcatcattttggtaaccctaggtttgagcttattagacatgatgttgttgagccacttttgcttgaagttgaccagatctatcatctcgcttgccctgcttctcccgttcattacaagcataatcccgtcaagactattaagactaatgtggtggggactttgaatatgctgggattggctaaaagagtcggtgcgaggtttttgctaacgagcaccagcgaggtgtacggtgatccattagaacatccacagaaggagacatactggggcaatgttaatcctattggtgtccgaagttgctacgatgagggaaaacgtacagctgaaacattgagcatggattatcacagaggtgctgaagttgaggtgagaattgctaggatttttaacacttatggacctcgtatgtgtattgatgatggtcgcgttgtcagcaactttgtcgctcaggctttaaggaaggagcctttgacagtttatggtgatgggaaacaaacgagaagtttccaatttgtgtcagatctggttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="+" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="86361" stop="89841"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86661" g_stop="86951" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="291" r_length="291" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86952" i_stop="87054" i_length="103">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87055" g_stop="87202" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="439" r_length="148" r_score="0.932"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87203" i_stop="88663" i_length="1461">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88664" g_stop="88743" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="519" r_length="80" r_score="0.950"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88744" i_stop="89296" i_length="553">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89297" g_stop="89380" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="603" r_length="84" r_score="0.964"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89381" i_stop="89464" i_length="84">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="89465" g_stop="89539" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="678" r_length="75" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="+" ref_id="SGN-E603833" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E603833" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86661" e_stop="86951"/>
          <exon e_start="87055" e_stop="87202"/>
          <exon e_start="88664" e_stop="88743"/>
          <exon e_start="89297" e_stop="89380"/>
          <exon e_start="89465" e_stop="89539"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCCGTTGGGATTAAAGCGGAAGGTTTTGAGGATTGTGGTGACTGGTGGTGCTGGTTTTGTTGGTAGTCATTTAGTGGATCGTTTGATTGCGAGAGGTGATAGTGTGATCGTCGTTGATAATTTCTTCACCGGACGGAAAGAGAACGTTATGCATCATTTTGGTAACCCTAGGTTTGAGCTTATTAGACATGATGTTGTTGAGCCACTTTTGCTTGAAGTTGACCAGATCTATCATCTCGCTTGCCCTGCTTCTCCCGTTCATTACAAGCATAATCCCGTCAAAACTATCATATCCTTCTTTTTTAAAAATTATCATTAATTTTAATTACGTGCATAAAATTATATTAAATATATTATTATCATCGTTTCATCCTTGACGGATTAATTTTTACAAGACTAATGTAGTTGGTACTTTGAACATGCTGGGATTGGCTAAAAGAGTCGGTGCGAGGTTTTTGCTAACCAGCACTAGCGAAGTATATGGTGATCCTTTAGAACATCCACAGAAGGAGACATACTGGGGCAATGTTAATCCTATTGGTAAGATTTTTTAATTTCTTTTTCTATTTTCTATTTTAGTTATTTTCTTTTTAAAAAAATTCTTCAAAATCTCTTAATTTTAATTTTCACATTATATATTTTATTAAAATGCACGAATAAATTGAAACGAAAGAATTACGATGCACGTTAGCTATGGTCTTTTGATGGTTCATGGTAAAAATGTGGAGCCACGTGTTGAACGATGATGAGTGCTAATGACGTTTCTGTCCTTAGATCGGGTCGGGAAAATTATTTTAATTTAATTTTTTTTTGTCAACGATGATACCGTGATTTGCGGGTCCGGCCGCTTCATTCACCTATCTTTATGTCTTTCATTTTAATTCAATTGGCGCGCCCTTTTCTATTCAATCTTTTCTCTCTTTTATTTTGTCCTTGAAAAATTAAATTAGCTTAAGTAATTACTTTCTTGTCTTTTTCTTTTTTTCCTTTTATTTCCTTTTGAGTCTTTTGATATTTCACGTTTCGATTTGTTTGTTTAATTTTTTATTTTGTTTTAAAAAAAAGTTATGCCATGTTTAAGATAATAAAGATATAAAAATATTTTAGTATATTTCACTTCTTTCGTACGATAATAATAGTTGTTCACTATGTTATTTTGGAATGTTCAATAATATTTTTTCGTTTTATCAAATAATAGATAATTTTTGAATGACCTAGTTTGACTTGGAACGGAGTTTAAAAAAATAAAACAGACATTTTAAACTTGTGATTCTAAATTAAAGTTATGTCTAATGTACAAAAATGTCATTCATGCCACGTGGAAAGTTAAAGTGAAATTGTTGCCAAAAAAGCAAAGAGATTATTCTTTTGAATCAGACTAAAAAGGAAACAATGTTATTCTTTTTGAAACGGATGGAATATTTATTATATTCAAAGGGTGATACAGTAAAATTATTTTTTTATTTATATTTTCTATAGTAGACAAGTATTATTGTACATATTTTGATTTAAGATCATATAATTTAAAAAAATTGCTTTGTTTTGGTAGACTCGGTATTAGTCAAAATATGAAAAATAAATTGACAAAACGGAGGAAGTTACCATGACTATAATATTATCAATGTGATTCCACAAATGGAGTCTGTTGAACTCTTCCTTTACATGAAGGGAATGAATGCCTTAATGGAATGGAATCCGGGATCCAAGTAGATTAGGTTAAGGCAAGTATGAGTAGAGACTCTTTTCGATAACTTTGAAAAGCTTTATAACAACAACCAGTGAAAGAAATATAATAGTGAAACAAATTGTGTTTGTTTAACTACGAAGAAAGAGAAATAAATATAGTTGGACAGGTAGTAGTTGAATTATTATTGAATTTGTATAGAATATTAGATCTGAAATGTAACTTTAGTTTCCCGCAGACTAAGGAAGATGGTCTGTTTTGCCTTTTGTCTATTTTAATGTAAATGGTGGGGTTAACTGACCAAGAAAGTAAAACAGGTGTCCGAAGTTGCTACGATGAGGGAAAACGAACAGCTGAAACATTGACAATGGATTATCACAGAGGTGCAGAAGTTGAGGTTTGTGTTTTTTTTTTAACCCATAGTCCAGATTAATGTTTACTGTACTTGTTGATAATGTAGACTTCATAGATACTGTAATTGTAACTCCTCTAGTACTACATTCTCAAGAAATATAGGACATTTGTCACCTAACGGTGTGGCCTACTGGTCAATGAAGCAGGATGAGAACCATGAGTTCTCGAGTTTAAATTCCAAGAGATACAAAAACACAAGTGATATCTTACCATTTGTTCACTACGTGACACATGTTGTTGGTGTGAGGTGACAGGTTTCTTGTGTAATTAGTCGAGGTGCGAGGAAAAATAAAATTAACAATCACTCTGGAGCCAACTGTTTTATTCCTTATTGCGCATGTACTTGATCATCGATAAATGTACTTTGTATCTAGTGTTTTTAAATAATGTACTATCGGTGTAGTTTAATCTATGATAGCAAGTTAGCTACCGTTTTTATCAGGTTACTAATTACTGTTTATCATAGATATGTATCTGAAATTACCTGTTAAGTAATTTGCTGGTAAAATTGTGTCGATGTACCTATGTTGTTACAGGTGAGAATCGCTAGGATCTTTAACACTTATGGACCTCGTATGTGTATTGATGACGGTCGCGTTGTCAGCAACTTTGTCGCTCAGGTGACTCCATTATTTAAATATAAACGTAAAGTTAATGGATTCTTAAACTAAGCAACAAAAAGCTTATATAAAATTTGTTTACAGGCTTTAAGGAAAGAGCCTTTGACAGTTTATGGTGATGGGAAACAAACAAGAAGTTTCCAATTTGTTTCAGATCTG</genome_strand>
        <mrna_strand>ATCCCGTTGGGATTGCAGCGGAAGAGTTTGAGGATCGTGGTGACTGGTGGTGCTGGTTTTGTAGGTAGTCATCTTGTGGACCGTTTGATTGCGAGAGGTGATAGCGTCATCGTCGTTGATAATTTCTTTACCGGACGGAAAGAGAATGTTATGCATCATTTTGGTAACCCTAGGTTTGAGCTTATTAGACATGATGTTGTTGAGCCACTTTTGCTTGAAGTTGACCAGATCTATCATCTCGCTTGCCCTGCTTCTCCCGTTCATTACAAGCATAATCCCGTCAAGACTATT.......................................................................................................AAGACTAATGTGGTGGGGACTTTGAATATGCTGGGATTGGCTAAAAGAGTCGGTGCGAGGTTTTTGCTAACGAGCACCAGCGAGGTGTACGGTGATCCATTAGAACATCCACAGAAGGAGACATACTGGGGCAATGTTAATCCTATTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCCGAAGTTGCTACGATGAGGGAAAACGTACAGCTGAAACATTGAGCATGGATTATCACAGAGGTGCTGAAGTTGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAATTGCTAGGATTTTTAACACTTATGGACCTCGTATGTGTATTGATGATGGTCGCGTTGTCAGCAACTTTGTCGCTCAG....................................................................................GCTTTAAGGAAGGAGCCTTTGACAGTTTATGGTGATGGGAAACAAACGAGAAGTTTCCAATTTGTGTCAGATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E466059" ref_strand="+" ref_description="SGN-E466059 [cPRO-23-G5]">
      <seq>aagagtttgaggatcgtggtgactggtggtgctggttttgtaggtagtcatcttgtggaccgtttgattgcgagaggtgatagcgtgatcgtcgttgataatttcttcaccggacggaaagagaatgttatgcatcattttggtaaccctaggtttgagcttattagacacgatgttgttgagccacttttgcttgaagttgaccagatctatcatctcgcttgccctgcttctcccgttcattacaagcataatcccgtcaagactattaagactaatgtggtggggactttgaacatgctgggattggctaaaagagtcggtgcgaggtttttgctgacgagcaccagcgaggtgtacggtgatcctttagaacatccacagaaggagacatactggggcaatgttaatcctattggtgtccgaagttgctacgatgagggaaaacgtacagctgaaacattgaccatggattatcacagaggtgctgaagttgaggtgagaattgctaggatctttaacacttatggacctcgtatgtgcattgatgatggtcgcgttgtcagcaactttgtcgctcaggctttaaggaaggagcctttgacagtttatggtgatgggaaacaaacaagaagtttccaatttgtttcagatctggttgaaggcctaatgcngntgatggaaggagacatgtcggacccttcacctcggaaaccctggtgattcacaatgcttgaacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="+" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="86382" stop="90432"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86682" g_stop="86951" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="270" r_length="270" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86952" i_stop="87054" i_length="103">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87055" g_stop="87202" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="418" r_length="148" r_score="0.939"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87203" i_stop="88663" i_length="1461">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88664" g_stop="88743" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="498" r_length="80" r_score="0.962"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88744" i_stop="89296" i_length="553">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89297" g_stop="89380" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="582" r_length="84" r_score="0.964"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89381" i_stop="89464" i_length="84">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="89465" g_stop="89539" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="583" r_stop="657" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="89540" i_stop="90044" i_length="505">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="90045" g_stop="90132" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="658" r_stop="742" r_length="85" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="+" ref_id="SGN-E466059" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>745</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E466059" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86682" e_stop="86951"/>
          <exon e_start="87055" e_stop="87202"/>
          <exon e_start="88664" e_stop="88743"/>
          <exon e_start="89297" e_stop="89380"/>
          <exon e_start="89465" e_stop="89539"/>
          <exon e_start="90045" e_stop="90132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGTTTTGAGGATTGTGGTGACTGGTGGTGCTGGTTTTGTTGGTAGTCATTTAGTGGATCGTTTGATTGCGAGAGGTGATAGTGTGATCGTCGTTGATAATTTCTTCACCGGACGGAAAGAGAACGTTATGCATCATTTTGGTAACCCTAGGTTTGAGCTTATTAGACATGATGTTGTTGAGCCACTTTTGCTTGAAGTTGACCAGATCTATCATCTCGCTTGCCCTGCTTCTCCCGTTCATTACAAGCATAATCCCGTCAAAACTATCATATCCTTCTTTTTTAAAAATTATCATTAATTTTAATTACGTGCATAAAATTATATTAAATATATTATTATCATCGTTTCATCCTTGACGGATTAATTTTTACAAGACTAATGTAGTTGGTACTTTGAACATGCTGGGATTGGCTAAAAGAGTCGGTGCGAGGTTTTTGCTAACCAGCACTAGCGAAGTATATGGTGATCCTTTAGAACATCCACAGAAGGAGACATACTGGGGCAATGTTAATCCTATTGGTAAGATTTTTTAATTTCTTTTTCTATTTTCTATTTTAGTTATTTTCTTTTTAAAAAAATTCTTCAAAATCTCTTAATTTTAATTTTCACATTATATATTTTATTAAAATGCACGAATAAATTGAAACGAAAGAATTACGATGCACGTTAGCTATGGTCTTTTGATGGTTCATGGTAAAAATGTGGAGCCACGTGTTGAACGATGATGAGTGCTAATGACGTTTCTGTCCTTAGATCGGGTCGGGAAAATTATTTTAATTTAATTTTTTTTTGTCAACGATGATACCGTGATTTGCGGGTCCGGCCGCTTCATTCACCTATCTTTATGTCTTTCATTTTAATTCAATTGGCGCGCCCTTTTCTATTCAATCTTTTCTCTCTTTTATTTTGTCCTTGAAAAATTAAATTAGCTTAAGTAATTACTTTCTTGTCTTTTTCTTTTTTTCCTTTTATTTCCTTTTGAGTCTTTTGATATTTCACGTTTCGATTTGTTTGTTTAATTTTTTATTTTGTTTTAAAAAAAAGTTATGCCATGTTTAAGATAATAAAGATATAAAAATATTTTAGTATATTTCACTTCTTTCGTACGATAATAATAGTTGTTCACTATGTTATTTTGGAATGTTCAATAATATTTTTTCGTTTTATCAAATAATAGATAATTTTTGAATGACCTAGTTTGACTTGGAACGGAGTTTAAAAAAATAAAACAGACATTTTAAACTTGTGATTCTAAATTAAAGTTATGTCTAATGTACAAAAATGTCATTCATGCCACGTGGAAAGTTAAAGTGAAATTGTTGCCAAAAAAGCAAAGAGATTATTCTTTTGAATCAGACTAAAAAGGAAACAATGTTATTCTTTTTGAAACGGATGGAATATTTATTATATTCAAAGGGTGATACAGTAAAATTATTTTTTTATTTATATTTTCTATAGTAGACAAGTATTATTGTACATATTTTGATTTAAGATCATATAATTTAAAAAAATTGCTTTGTTTTGGTAGACTCGGTATTAGTCAAAATATGAAAAATAAATTGACAAAACGGAGGAAGTTACCATGACTATAATATTATCAATGTGATTCCACAAATGGAGTCTGTTGAACTCTTCCTTTACATGAAGGGAATGAATGCCTTAATGGAATGGAATCCGGGATCCAAGTAGATTAGGTTAAGGCAAGTATGAGTAGAGACTCTTTTCGATAACTTTGAAAAGCTTTATAACAACAACCAGTGAAAGAAATATAATAGTGAAACAAATTGTGTTTGTTTAACTACGAAGAAAGAGAAATAAATATAGTTGGACAGGTAGTAGTTGAATTATTATTGAATTTGTATAGAATATTAGATCTGAAATGTAACTTTAGTTTCCCGCAGACTAAGGAAGATGGTCTGTTTTGCCTTTTGTCTATTTTAATGTAAATGGTGGGGTTAACTGACCAAGAAAGTAAAACAGGTGTCCGAAGTTGCTACGATGAGGGAAAACGAACAGCTGAAACATTGACAATGGATTATCACAGAGGTGCAGAAGTTGAGGTTTGTGTTTTTTTTTTAACCCATAGTCCAGATTAATGTTTACTGTACTTGTTGATAATGTAGACTTCATAGATACTGTAATTGTAACTCCTCTAGTACTACATTCTCAAGAAATATAGGACATTTGTCACCTAACGGTGTGGCCTACTGGTCAATGAAGCAGGATGAGAACCATGAGTTCTCGAGTTTAAATTCCAAGAGATACAAAAACACAAGTGATATCTTACCATTTGTTCACTACGTGACACATGTTGTTGGTGTGAGGTGACAGGTTTCTTGTGTAATTAGTCGAGGTGCGAGGAAAAATAAAATTAACAATCACTCTGGAGCCAACTGTTTTATTCCTTATTGCGCATGTACTTGATCATCGATAAATGTACTTTGTATCTAGTGTTTTTAAATAATGTACTATCGGTGTAGTTTAATCTATGATAGCAAGTTAGCTACCGTTTTTATCAGGTTACTAATTACTGTTTATCATAGATATGTATCTGAAATTACCTGTTAAGTAATTTGCTGGTAAAATTGTGTCGATGTACCTATGTTGTTACAGGTGAGAATCGCTAGGATCTTTAACACTTATGGACCTCGTATGTGTATTGATGACGGTCGCGTTGTCAGCAACTTTGTCGCTCAGGTGACTCCATTATTTAAATATAAACGTAAAGTTAATGGATTCTTAAACTAAGCAACAAAAAGCTTATATAAAATTTGTTTACAGGCTTTAAGGAAAGAGCCTTTGACAGTTTATGGTGATGGGAAACAAACAAGAAGTTTCCAATTTGTTTCAGATCTGGTACTTTTCTCTCTGTTCTTCGTTTTTTTTTTAGCTTTTTTAATACGTTACCTTATTAGTTTTATATGCATTCTTTCGAAGTGGCTTTCAAATGTAAGATTCTTTAATAATTTGACTTGCCATCTAGCTTACAGTTTACAACATGATTAGAAAATAAATAAATTAATATCTAAAGTAGGGTCCCCCTACTCTGTTGCAAGGTAAAATATTGTAGTGTGGAAGCACATGCCATGTCTAAGTAGAAGCCAGATACCTGGGACCCGTATTTTTATTTCTATGTACTCCTTCTGTCTCAATTTACGAGATGTAGTTTTGATTGGACACGGAGTTCAAGAAATATGTGTGAAGACTTTGCAATGTTCCGAAGTTATGCTTAAAAAGAGTGTACCTTTGTGGAACTTTTATCAAGCAGTAAAACAGTAATAAAAGTATAAAAACCATGGTTTGTGACCTTGATATAACATAAGAAGGAATCTAAACTTGCTTTATTTTGGTTAATGTGAAGGTTGAAGGCTTAATGCGGTTGATGGAAGGAGAACATGTCGGACCCTTCAACCTCGGAAACCCTGGTGAATTCACAATGCTTGAACTTG</genome_strand>
        <mrna_strand>AAGAGTTTGAGGATCGTGGTGACTGGTGGTGCTGGTTTTGTAGGTAGTCATCTTGTGGACCGTTTGATTGCGAGAGGTGATAGCGTGATCGTCGTTGATAATTTCTTCACCGGACGGAAAGAGAATGTTATGCATCATTTTGGTAACCCTAGGTTTGAGCTTATTAGACACGATGTTGTTGAGCCACTTTTGCTTGAAGTTGACCAGATCTATCATCTCGCTTGCCCTGCTTCTCCCGTTCATTACAAGCATAATCCCGTCAAGACTATT.......................................................................................................AAGACTAATGTGGTGGGGACTTTGAACATGCTGGGATTGGCTAAAAGAGTCGGTGCGAGGTTTTTGCTGACGAGCACCAGCGAGGTGTACGGTGATCCTTTAGAACATCCACAGAAGGAGACATACTGGGGCAATGTTAATCCTATTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCCGAAGTTGCTACGATGAGGGAAAACGTACAGCTGAAACATTGACCATGGATTATCACAGAGGTGCTGAAGTTGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAATTGCTAGGATCTTTAACACTTATGGACCTCGTATGTGCATTGATGATGGTCGCGTTGTCAGCAACTTTGTCGCTCAG....................................................................................GCTTTAAGGAAGGAGCCTTTGACAGTTTATGGTGATGGGAAACAAACAAGAAGTTTCCAATTTGTTTCAGATCTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAGGCCTAATGCNGNTGATGGAAGGAG-ACATGTCGGACCCTTC-ACCTCGGAAACCCTGGTG-ATTCACAATGCTTGAACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E223330" ref_strand="+" ref_description="SGN-E223330 [cLEL-14-E17](-)">
      <seq>gtagtcatttagtggatcgtttgattccgagaggtgatagtgtgatcgtcgttgataatttcttcaccggacggaaagagaacgttatgcatcattttggtaaccctaggtttgagcttattagacatgatgttgttgagccacttttgcttgaagttgaccagatctatcatctcgcttgccctgcttctcccgttcattacaagcataatcccgtcaaaactatcaagactaatgtagttggtactttgaacatgctgggattggctaaaagagtcggtgcgaggtttttgctaaccagcactagcgaagtatatggtgatcctttagaacatccacagaaggagacatactggggcaatgttaatcctattggtgtccgaagttgctacgatgagggaaaacgaacagctgaaacattgacaatggattatcacagaggtgcagaagttgaggtgagaatcgctaggatctttaacacttatggaacacgtatgtgtattgatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="+" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="86425" stop="89648"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86725" g_stop="86951" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86952" i_stop="87054" i_length="103">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87055" g_stop="87202" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="375" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87203" i_stop="88663" i_length="1461">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88664" g_stop="88743" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="455" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88744" i_stop="89296" i_length="553">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89297" g_stop="89349" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="508" r_length="53" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="+" ref_id="SGN-E223330" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E223330" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86725" e_stop="86951"/>
          <exon e_start="87055" e_stop="87202"/>
          <exon e_start="88664" e_stop="88743"/>
          <exon e_start="89297" e_stop="89349"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGTCATTTAGTGGATCGTTTGATTGCGAGAGGTGATAGTGTGATCGTCGTTGATAATTTCTTCACCGGACGGAAAGAGAACGTTATGCATCATTTTGGTAACCCTAGGTTTGAGCTTATTAGACATGATGTTGTTGAGCCACTTTTGCTTGAAGTTGACCAGATCTATCATCTCGCTTGCCCTGCTTCTCCCGTTCATTACAAGCATAATCCCGTCAAAACTATCATATCCTTCTTTTTTAAAAATTATCATTAATTTTAATTACGTGCATAAAATTATATTAAATATATTATTATCATCGTTTCATCCTTGACGGATTAATTTTTACAAGACTAATGTAGTTGGTACTTTGAACATGCTGGGATTGGCTAAAAGAGTCGGTGCGAGGTTTTTGCTAACCAGCACTAGCGAAGTATATGGTGATCCTTTAGAACATCCACAGAAGGAGACATACTGGGGCAATGTTAATCCTATTGGTAAGATTTTTTAATTTCTTTTTCTATTTTCTATTTTAGTTATTTTCTTTTTAAAAAAATTCTTCAAAATCTCTTAATTTTAATTTTCACATTATATATTTTATTAAAATGCACGAATAAATTGAAACGAAAGAATTACGATGCACGTTAGCTATGGTCTTTTGATGGTTCATGGTAAAAATGTGGAGCCACGTGTTGAACGATGATGAGTGCTAATGACGTTTCTGTCCTTAGATCGGGTCGGGAAAATTATTTTAATTTAATTTTTTTTTGTCAACGATGATACCGTGATTTGCGGGTCCGGCCGCTTCATTCACCTATCTTTATGTCTTTCATTTTAATTCAATTGGCGCGCCCTTTTCTATTCAATCTTTTCTCTCTTTTATTTTGTCCTTGAAAAATTAAATTAGCTTAAGTAATTACTTTCTTGTCTTTTTCTTTTTTTCCTTTTATTTCCTTTTGAGTCTTTTGATATTTCACGTTTCGATTTGTTTGTTTAATTTTTTATTTTGTTTTAAAAAAAAGTTATGCCATGTTTAAGATAATAAAGATATAAAAATATTTTAGTATATTTCACTTCTTTCGTACGATAATAATAGTTGTTCACTATGTTATTTTGGAATGTTCAATAATATTTTTTCGTTTTATCAAATAATAGATAATTTTTGAATGACCTAGTTTGACTTGGAACGGAGTTTAAAAAAATAAAACAGACATTTTAAACTTGTGATTCTAAATTAAAGTTATGTCTAATGTACAAAAATGTCATTCATGCCACGTGGAAAGTTAAAGTGAAATTGTTGCCAAAAAAGCAAAGAGATTATTCTTTTGAATCAGACTAAAAAGGAAACAATGTTATTCTTTTTGAAACGGATGGAATATTTATTATATTCAAAGGGTGATACAGTAAAATTATTTTTTTATTTATATTTTCTATAGTAGACAAGTATTATTGTACATATTTTGATTTAAGATCATATAATTTAAAAAAATTGCTTTGTTTTGGTAGACTCGGTATTAGTCAAAATATGAAAAATAAATTGACAAAACGGAGGAAGTTACCATGACTATAATATTATCAATGTGATTCCACAAATGGAGTCTGTTGAACTCTTCCTTTACATGAAGGGAATGAATGCCTTAATGGAATGGAATCCGGGATCCAAGTAGATTAGGTTAAGGCAAGTATGAGTAGAGACTCTTTTCGATAACTTTGAAAAGCTTTATAACAACAACCAGTGAAAGAAATATAATAGTGAAACAAATTGTGTTTGTTTAACTACGAAGAAAGAGAAATAAATATAGTTGGACAGGTAGTAGTTGAATTATTATTGAATTTGTATAGAATATTAGATCTGAAATGTAACTTTAGTTTCCCGCAGACTAAGGAAGATGGTCTGTTTTGCCTTTTGTCTATTTTAATGTAAATGGTGGGGTTAACTGACCAAGAAAGTAAAACAGGTGTCCGAAGTTGCTACGATGAGGGAAAACGAACAGCTGAAACATTGACAATGGATTATCACAGAGGTGCAGAAGTTGAGGTTTGTGTTTTTTTTTTAACCCATAGTCCAGATTAATGTTTACTGTACTTGTTGATAATGTAGACTTCATAGATACTGTAATTGTAACTCCTCTAGTACTACATTCTCAAGAAATATAGGACATTTGTCACCTAACGGTGTGGCCTACTGGTCAATGAAGCAGGATGAGAACCATGAGTTCTCGAGTTTAAATTCCAAGAGATACAAAAACACAAGTGATATCTTACCATTTGTTCACTACGTGACACATGTTGTTGGTGTGAGGTGACAGGTTTCTTGTGTAATTAGTCGAGGTGCGAGGAAAAATAAAATTAACAATCACTCTGGAGCCAACTGTTTTATTCCTTATTGCGCATGTACTTGATCATCGATAAATGTACTTTGTATCTAGTGTTTTTAAATAATGTACTATCGGTGTAGTTTAATCTATGATAGCAAGTTAGCTACCGTTTTTATCAGGTTACTAATTACTGTTTATCATAGATATGTATCTGAAATTACCTGTTAAGTAATTTGCTGGTAAAATTGTGTCGATGTACCTATGTTGTTACAGGTGAGAATCGCTAGGATCTTTAACACTTATGGACCTCGTATGTGTATTGATGA</genome_strand>
        <mrna_strand>GTAGTCATTTAGTGGATCGTTTGATTCCGAGAGGTGATAGTGTGATCGTCGTTGATAATTTCTTCACCGGACGGAAAGAGAACGTTATGCATCATTTTGGTAACCCTAGGTTTGAGCTTATTAGACATGATGTTGTTGAGCCACTTTTGCTTGAAGTTGACCAGATCTATCATCTCGCTTGCCCTGCTTCTCCCGTTCATTACAAGCATAATCCCGTCAAAACTATC.......................................................................................................AAGACTAATGTAGTTGGTACTTTGAACATGCTGGGATTGGCTAAAAGAGTCGGTGCGAGGTTTTTGCTAACCAGCACTAGCGAAGTATATGGTGATCCTTTAGAACATCCACAGAAGGAGACATACTGGGGCAATGTTAATCCTATTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCCGAAGTTGCTACGATGAGGGAAAACGAACAGCTGAAACATTGACAATGGATTATCACAGAGGTGCAGAAGTTGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAATCGCTAGGATCTTTAACACTTATGGAACACGTATGTGTATTGATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242553" ref_strand="+" ref_description="SGN-E242553 [cLED-30-H3]">
      <seq>gtggatcgtttgattgcgagaggtgatagtgtgatcgtcgttgataatttcttcaccggacggaaagagaacgttatgcatcattttggtaaccctaggtttgagcttattagacatgatgttgttgagccacttttgcttgaagttgaccagatctatcatctcgcttgccctgcttctcccgttcattacaagcataatcccgtcaaaactatcaagactaatgtagttggtactttgaacatgctgggattggctaaaagagtcggtgcgaggtttttgctaaccagcactagcgaagtatatggtgatcctttagaacatccacagaaggagacatactggggcaatgttaatcctattggtgtccgaagttgctacgatgagggaaaacgaacagctgaaacattgacaatggattatcacagaggtgcagaagttgaggtgagaatcgctaggatctttaacacttatggacctcgtatgtgtattgatgacggtcgcgttgtcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="+" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="86436" stop="89665"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86736" g_stop="86951" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="216" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86952" i_stop="87054" i_length="103">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87055" g_stop="87202" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="364" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87203" i_stop="88663" i_length="1461">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88664" g_stop="88743" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="444" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88744" i_stop="89296" i_length="553">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89297" g_stop="89365" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="513" r_length="69" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="+" ref_id="SGN-E242553" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242553" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86736" e_stop="86951"/>
          <exon e_start="87055" e_stop="87202"/>
          <exon e_start="88664" e_stop="88743"/>
          <exon e_start="89297" e_stop="89365"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGATCGTTTGATTGCGAGAGGTGATAGTGTGATCGTCGTTGATAATTTCTTCACCGGACGGAAAGAGAACGTTATGCATCATTTTGGTAACCCTAGGTTTGAGCTTATTAGACATGATGTTGTTGAGCCACTTTTGCTTGAAGTTGACCAGATCTATCATCTCGCTTGCCCTGCTTCTCCCGTTCATTACAAGCATAATCCCGTCAAAACTATCATATCCTTCTTTTTTAAAAATTATCATTAATTTTAATTACGTGCATAAAATTATATTAAATATATTATTATCATCGTTTCATCCTTGACGGATTAATTTTTACAAGACTAATGTAGTTGGTACTTTGAACATGCTGGGATTGGCTAAAAGAGTCGGTGCGAGGTTTTTGCTAACCAGCACTAGCGAAGTATATGGTGATCCTTTAGAACATCCACAGAAGGAGACATACTGGGGCAATGTTAATCCTATTGGTAAGATTTTTTAATTTCTTTTTCTATTTTCTATTTTAGTTATTTTCTTTTTAAAAAAATTCTTCAAAATCTCTTAATTTTAATTTTCACATTATATATTTTATTAAAATGCACGAATAAATTGAAACGAAAGAATTACGATGCACGTTAGCTATGGTCTTTTGATGGTTCATGGTAAAAATGTGGAGCCACGTGTTGAACGATGATGAGTGCTAATGACGTTTCTGTCCTTAGATCGGGTCGGGAAAATTATTTTAATTTAATTTTTTTTTGTCAACGATGATACCGTGATTTGCGGGTCCGGCCGCTTCATTCACCTATCTTTATGTCTTTCATTTTAATTCAATTGGCGCGCCCTTTTCTATTCAATCTTTTCTCTCTTTTATTTTGTCCTTGAAAAATTAAATTAGCTTAAGTAATTACTTTCTTGTCTTTTTCTTTTTTTCCTTTTATTTCCTTTTGAGTCTTTTGATATTTCACGTTTCGATTTGTTTGTTTAATTTTTTATTTTGTTTTAAAAAAAAGTTATGCCATGTTTAAGATAATAAAGATATAAAAATATTTTAGTATATTTCACTTCTTTCGTACGATAATAATAGTTGTTCACTATGTTATTTTGGAATGTTCAATAATATTTTTTCGTTTTATCAAATAATAGATAATTTTTGAATGACCTAGTTTGACTTGGAACGGAGTTTAAAAAAATAAAACAGACATTTTAAACTTGTGATTCTAAATTAAAGTTATGTCTAATGTACAAAAATGTCATTCATGCCACGTGGAAAGTTAAAGTGAAATTGTTGCCAAAAAAGCAAAGAGATTATTCTTTTGAATCAGACTAAAAAGGAAACAATGTTATTCTTTTTGAAACGGATGGAATATTTATTATATTCAAAGGGTGATACAGTAAAATTATTTTTTTATTTATATTTTCTATAGTAGACAAGTATTATTGTACATATTTTGATTTAAGATCATATAATTTAAAAAAATTGCTTTGTTTTGGTAGACTCGGTATTAGTCAAAATATGAAAAATAAATTGACAAAACGGAGGAAGTTACCATGACTATAATATTATCAATGTGATTCCACAAATGGAGTCTGTTGAACTCTTCCTTTACATGAAGGGAATGAATGCCTTAATGGAATGGAATCCGGGATCCAAGTAGATTAGGTTAAGGCAAGTATGAGTAGAGACTCTTTTCGATAACTTTGAAAAGCTTTATAACAACAACCAGTGAAAGAAATATAATAGTGAAACAAATTGTGTTTGTTTAACTACGAAGAAAGAGAAATAAATATAGTTGGACAGGTAGTAGTTGAATTATTATTGAATTTGTATAGAATATTAGATCTGAAATGTAACTTTAGTTTCCCGCAGACTAAGGAAGATGGTCTGTTTTGCCTTTTGTCTATTTTAATGTAAATGGTGGGGTTAACTGACCAAGAAAGTAAAACAGGTGTCCGAAGTTGCTACGATGAGGGAAAACGAACAGCTGAAACATTGACAATGGATTATCACAGAGGTGCAGAAGTTGAGGTTTGTGTTTTTTTTTTAACCCATAGTCCAGATTAATGTTTACTGTACTTGTTGATAATGTAGACTTCATAGATACTGTAATTGTAACTCCTCTAGTACTACATTCTCAAGAAATATAGGACATTTGTCACCTAACGGTGTGGCCTACTGGTCAATGAAGCAGGATGAGAACCATGAGTTCTCGAGTTTAAATTCCAAGAGATACAAAAACACAAGTGATATCTTACCATTTGTTCACTACGTGACACATGTTGTTGGTGTGAGGTGACAGGTTTCTTGTGTAATTAGTCGAGGTGCGAGGAAAAATAAAATTAACAATCACTCTGGAGCCAACTGTTTTATTCCTTATTGCGCATGTACTTGATCATCGATAAATGTACTTTGTATCTAGTGTTTTTAAATAATGTACTATCGGTGTAGTTTAATCTATGATAGCAAGTTAGCTACCGTTTTTATCAGGTTACTAATTACTGTTTATCATAGATATGTATCTGAAATTACCTGTTAAGTAATTTGCTGGTAAAATTGTGTCGATGTACCTATGTTGTTACAGGTGAGAATCGCTAGGATCTTTAACACTTATGGACCTCGTATGTGTATTGATGACGGTCGCGTTGTCAGC</genome_strand>
        <mrna_strand>GTGGATCGTTTGATTGCGAGAGGTGATAGTGTGATCGTCGTTGATAATTTCTTCACCGGACGGAAAGAGAACGTTATGCATCATTTTGGTAACCCTAGGTTTGAGCTTATTAGACATGATGTTGTTGAGCCACTTTTGCTTGAAGTTGACCAGATCTATCATCTCGCTTGCCCTGCTTCTCCCGTTCATTACAAGCATAATCCCGTCAAAACTATC.......................................................................................................AAGACTAATGTAGTTGGTACTTTGAACATGCTGGGATTGGCTAAAAGAGTCGGTGCGAGGTTTTTGCTAACCAGCACTAGCGAAGTATATGGTGATCCTTTAGAACATCCACAGAAGGAGACATACTGGGGCAATGTTAATCCTATTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCCGAAGTTGCTACGATGAGGGAAAACGAACAGCTGAAACATTGACAATGGATTATCACAGAGGTGCAGAAGTTGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAATCGCTAGGATCTTTAACACTTATGGACCTCGTATGTGTATTGATGACGGTCGCGTTGTCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E453085" ref_strand="+" ref_description="SGN-E453085 [cSTS-18-H10]">
      <seq>cgtcatcgtcgttgataatttctttaccggacggaaagagaatgttatgcatcattttggtaaccctaggtttgagcttattagacatgatgttgttgagccacttttgcttgaagttgaccagatctatcatctcgcttgccctgcttctcccgttcattacaagcataatcccgtcaagactattaagactaatgtggtggggactttgaacatgctgggattggctaaaagagtcggtgcgaggtttttgctaacgagcaccagcgaggtgtacggtgatcctttagaacatccacagaaggagacatactggggcaatgttaatcctattggtgtccgaagttgctacgatgagggaaaacgtacagctgaaacattgaccatggattatcacagaggtgctgaagttgaggtgagaattgctaggatctttaacacttatggacctcgtatgtgcattgatgatggtcgcgttgtcagcaactttgtcgctcaggctttaaggaaggagcctttgacagtttatggtgatgtgaaacaaacaagaagtttccaatttgtttcagatctggttgaaggcctaatgcggttgatggaaggagaacatgtcggacccttcaacctcggaaaccctggtgaattcacaatgcttgaacttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="+" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="86466" stop="90434"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86765" g_stop="86951" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86952" i_stop="87054" i_length="103">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87055" g_stop="87202" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="335" r_length="148" r_score="0.946"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87203" i_stop="88663" i_length="1461">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88664" g_stop="88743" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="415" r_length="80" r_score="0.962"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88744" i_stop="89296" i_length="553">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89297" g_stop="89380" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="499" r_length="84" r_score="0.964"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89381" i_stop="89464" i_length="84">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="89465" g_stop="89539" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="574" r_length="75" r_score="0.973"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="89540" i_stop="90044" i_length="505">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="90045" g_stop="90134" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="664" r_length="90" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="+" ref_id="SGN-E453085" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E453085" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86765" e_stop="86951"/>
          <exon e_start="87055" e_stop="87202"/>
          <exon e_start="88664" e_stop="88743"/>
          <exon e_start="89297" e_stop="89380"/>
          <exon e_start="89465" e_stop="89539"/>
          <exon e_start="90045" e_stop="90134"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGATCGTCGTTGATAATTTCTTCACCGGACGGAAAGAGAACGTTATGCATCATTTTGGTAACCCTAGGTTTGAGCTTATTAGACATGATGTTGTTGAGCCACTTTTGCTTGAAGTTGACCAGATCTATCATCTCGCTTGCCCTGCTTCTCCCGTTCATTACAAGCATAATCCCGTCAAAACTATCATATCCTTCTTTTTTAAAAATTATCATTAATTTTAATTACGTGCATAAAATTATATTAAATATATTATTATCATCGTTTCATCCTTGACGGATTAATTTTTACAAGACTAATGTAGTTGGTACTTTGAACATGCTGGGATTGGCTAAAAGAGTCGGTGCGAGGTTTTTGCTAACCAGCACTAGCGAAGTATATGGTGATCCTTTAGAACATCCACAGAAGGAGACATACTGGGGCAATGTTAATCCTATTGGTAAGATTTTTTAATTTCTTTTTCTATTTTCTATTTTAGTTATTTTCTTTTTAAAAAAATTCTTCAAAATCTCTTAATTTTAATTTTCACATTATATATTTTATTAAAATGCACGAATAAATTGAAACGAAAGAATTACGATGCACGTTAGCTATGGTCTTTTGATGGTTCATGGTAAAAATGTGGAGCCACGTGTTGAACGATGATGAGTGCTAATGACGTTTCTGTCCTTAGATCGGGTCGGGAAAATTATTTTAATTTAATTTTTTTTTGTCAACGATGATACCGTGATTTGCGGGTCCGGCCGCTTCATTCACCTATCTTTATGTCTTTCATTTTAATTCAATTGGCGCGCCCTTTTCTATTCAATCTTTTCTCTCTTTTATTTTGTCCTTGAAAAATTAAATTAGCTTAAGTAATTACTTTCTTGTCTTTTTCTTTTTTTCCTTTTATTTCCTTTTGAGTCTTTTGATATTTCACGTTTCGATTTGTTTGTTTAATTTTTTATTTTGTTTTAAAAAAAAGTTATGCCATGTTTAAGATAATAAAGATATAAAAATATTTTAGTATATTTCACTTCTTTCGTACGATAATAATAGTTGTTCACTATGTTATTTTGGAATGTTCAATAATATTTTTTCGTTTTATCAAATAATAGATAATTTTTGAATGACCTAGTTTGACTTGGAACGGAGTTTAAAAAAATAAAACAGACATTTTAAACTTGTGATTCTAAATTAAAGTTATGTCTAATGTACAAAAATGTCATTCATGCCACGTGGAAAGTTAAAGTGAAATTGTTGCCAAAAAAGCAAAGAGATTATTCTTTTGAATCAGACTAAAAAGGAAACAATGTTATTCTTTTTGAAACGGATGGAATATTTATTATATTCAAAGGGTGATACAGTAAAATTATTTTTTTATTTATATTTTCTATAGTAGACAAGTATTATTGTACATATTTTGATTTAAGATCATATAATTTAAAAAAATTGCTTTGTTTTGGTAGACTCGGTATTAGTCAAAATATGAAAAATAAATTGACAAAACGGAGGAAGTTACCATGACTATAATATTATCAATGTGATTCCACAAATGGAGTCTGTTGAACTCTTCCTTTACATGAAGGGAATGAATGCCTTAATGGAATGGAATCCGGGATCCAAGTAGATTAGGTTAAGGCAAGTATGAGTAGAGACTCTTTTCGATAACTTTGAAAAGCTTTATAACAACAACCAGTGAAAGAAATATAATAGTGAAACAAATTGTGTTTGTTTAACTACGAAGAAAGAGAAATAAATATAGTTGGACAGGTAGTAGTTGAATTATTATTGAATTTGTATAGAATATTAGATCTGAAATGTAACTTTAGTTTCCCGCAGACTAAGGAAGATGGTCTGTTTTGCCTTTTGTCTATTTTAATGTAAATGGTGGGGTTAACTGACCAAGAAAGTAAAACAGGTGTCCGAAGTTGCTACGATGAGGGAAAACGAACAGCTGAAACATTGACAATGGATTATCACAGAGGTGCAGAAGTTGAGGTTTGTGTTTTTTTTTTAACCCATAGTCCAGATTAATGTTTACTGTACTTGTTGATAATGTAGACTTCATAGATACTGTAATTGTAACTCCTCTAGTACTACATTCTCAAGAAATATAGGACATTTGTCACCTAACGGTGTGGCCTACTGGTCAATGAAGCAGGATGAGAACCATGAGTTCTCGAGTTTAAATTCCAAGAGATACAAAAACACAAGTGATATCTTACCATTTGTTCACTACGTGACACATGTTGTTGGTGTGAGGTGACAGGTTTCTTGTGTAATTAGTCGAGGTGCGAGGAAAAATAAAATTAACAATCACTCTGGAGCCAACTGTTTTATTCCTTATTGCGCATGTACTTGATCATCGATAAATGTACTTTGTATCTAGTGTTTTTAAATAATGTACTATCGGTGTAGTTTAATCTATGATAGCAAGTTAGCTACCGTTTTTATCAGGTTACTAATTACTGTTTATCATAGATATGTATCTGAAATTACCTGTTAAGTAATTTGCTGGTAAAATTGTGTCGATGTACCTATGTTGTTACAGGTGAGAATCGCTAGGATCTTTAACACTTATGGACCTCGTATGTGTATTGATGACGGTCGCGTTGTCAGCAACTTTGTCGCTCAGGTGACTCCATTATTTAAATATAAACGTAAAGTTAATGGATTCTTAAACTAAGCAACAAAAAGCTTATATAAAATTTGTTTACAGGCTTTAAGGAAAGAGCCTTTGACAGTTTATGGTGATGGGAAACAAACAAGAAGTTTCCAATTTGTTTCAGATCTGGTACTTTTCTCTCTGTTCTTCGTTTTTTTTTTAGCTTTTTTAATACGTTACCTTATTAGTTTTATATGCATTCTTTCGAAGTGGCTTTCAAATGTAAGATTCTTTAATAATTTGACTTGCCATCTAGCTTACAGTTTACAACATGATTAGAAAATAAATAAATTAATATCTAAAGTAGGGTCCCCCTACTCTGTTGCAAGGTAAAATATTGTAGTGTGGAAGCACATGCCATGTCTAAGTAGAAGCCAGATACCTGGGACCCGTATTTTTATTTCTATGTACTCCTTCTGTCTCAATTTACGAGATGTAGTTTTGATTGGACACGGAGTTCAAGAAATATGTGTGAAGACTTTGCAATGTTCCGAAGTTATGCTTAAAAAGAGTGTACCTTTGTGGAACTTTTATCAAGCAGTAAAACAGTAATAAAAGTATAAAAACCATGGTTTGTGACCTTGATATAACATAAGAAGGAATCTAAACTTGCTTTATTTTGGTTAATGTGAAGGTTGAAGGCTTAATGCGGTTGATGGAAGGAGAACATGTCGGACCCTTCAACCTCGGAAACCCTGGTGAATTCACAATGCTTGAACTTGCT</genome_strand>
        <mrna_strand>CGTCATCGTCGTTGATAATTTCTTTACCGGACGGAAAGAGAATGTTATGCATCATTTTGGTAACCCTAGGTTTGAGCTTATTAGACATGATGTTGTTGAGCCACTTTTGCTTGAAGTTGACCAGATCTATCATCTCGCTTGCCCTGCTTCTCCCGTTCATTACAAGCATAATCCCGTCAAGACTATT.......................................................................................................AAGACTAATGTGGTGGGGACTTTGAACATGCTGGGATTGGCTAAAAGAGTCGGTGCGAGGTTTTTGCTAACGAGCACCAGCGAGGTGTACGGTGATCCTTTAGAACATCCACAGAAGGAGACATACTGGGGCAATGTTAATCCTATTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCCGAAGTTGCTACGATGAGGGAAAACGTACAGCTGAAACATTGACCATGGATTATCACAGAGGTGCTGAAGTTGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAATTGCTAGGATCTTTAACACTTATGGACCTCGTATGTGCATTGATGATGGTCGCGTTGTCAGCAACTTTGTCGCTCAG....................................................................................GCTTTAAGGAAGGAGCCTTTGACAGTTTATGGTGATGTGAAACAAACAAGAAGTTTCCAATTTGTTTCAGATCTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAGGCCTAATGCGGTTGATGGAAGGAGAACATGTCGGACCCTTCAACCTCGGAAACCCTGGTGAATTCACAATGCTTGAACTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E303320" ref_strand="+" ref_description="SGN-E303320 [cLEX-2-K19]">
      <seq>gatcgtcgttgataatttcttcaccggacggaaagagaacgttatgcatcattttggtaaccctaggtttgagcttattagacatgatgttgttgagccacttttgcttgaagttgaccagatctatcatctcgcttgccctgcttctcccgttcattacaagcataatcccgtcaaaactatcaagactaatgtagttggtactttgaacatgctgggattggctaaaagagtcggtgcgaggtttttgctaaccagcactagcgaagtatatggtgatcctttagaacatccacagaaggagacatactggggcaatgttaatcctattggtgtccgaagttgctacgatgagggaaaacgaacagctgaaacattgacaatggattatcacagaggtgcagaagttgaggtgagaatcgctaggatctttaacacttatggacctcgtatgtgtattgatgacggtcgcgttgtcagcaactttgtcgctcaggctttaaggaaagagcctttgacagtttatggtgatgggaaacaaacaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="+" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="86468" stop="89814"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86768" g_stop="86951" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86952" i_stop="87054" i_length="103">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87055" g_stop="87202" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="332" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87203" i_stop="88663" i_length="1461">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88664" g_stop="88743" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="412" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88744" i_stop="89296" i_length="553">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89297" g_stop="89380" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="496" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89381" i_stop="89464" i_length="84">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="89465" g_stop="89514" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="546" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="+" ref_id="SGN-E303320" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303320" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86768" e_stop="86951"/>
          <exon e_start="87055" e_stop="87202"/>
          <exon e_start="88664" e_stop="88743"/>
          <exon e_start="89297" e_stop="89380"/>
          <exon e_start="89465" e_stop="89514"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCGTCGTTGATAATTTCTTCACCGGACGGAAAGAGAACGTTATGCATCATTTTGGTAACCCTAGGTTTGAGCTTATTAGACATGATGTTGTTGAGCCACTTTTGCTTGAAGTTGACCAGATCTATCATCTCGCTTGCCCTGCTTCTCCCGTTCATTACAAGCATAATCCCGTCAAAACTATCATATCCTTCTTTTTTAAAAATTATCATTAATTTTAATTACGTGCATAAAATTATATTAAATATATTATTATCATCGTTTCATCCTTGACGGATTAATTTTTACAAGACTAATGTAGTTGGTACTTTGAACATGCTGGGATTGGCTAAAAGAGTCGGTGCGAGGTTTTTGCTAACCAGCACTAGCGAAGTATATGGTGATCCTTTAGAACATCCACAGAAGGAGACATACTGGGGCAATGTTAATCCTATTGGTAAGATTTTTTAATTTCTTTTTCTATTTTCTATTTTAGTTATTTTCTTTTTAAAAAAATTCTTCAAAATCTCTTAATTTTAATTTTCACATTATATATTTTATTAAAATGCACGAATAAATTGAAACGAAAGAATTACGATGCACGTTAGCTATGGTCTTTTGATGGTTCATGGTAAAAATGTGGAGCCACGTGTTGAACGATGATGAGTGCTAATGACGTTTCTGTCCTTAGATCGGGTCGGGAAAATTATTTTAATTTAATTTTTTTTTGTCAACGATGATACCGTGATTTGCGGGTCCGGCCGCTTCATTCACCTATCTTTATGTCTTTCATTTTAATTCAATTGGCGCGCCCTTTTCTATTCAATCTTTTCTCTCTTTTATTTTGTCCTTGAAAAATTAAATTAGCTTAAGTAATTACTTTCTTGTCTTTTTCTTTTTTTCCTTTTATTTCCTTTTGAGTCTTTTGATATTTCACGTTTCGATTTGTTTGTTTAATTTTTTATTTTGTTTTAAAAAAAAGTTATGCCATGTTTAAGATAATAAAGATATAAAAATATTTTAGTATATTTCACTTCTTTCGTACGATAATAATAGTTGTTCACTATGTTATTTTGGAATGTTCAATAATATTTTTTCGTTTTATCAAATAATAGATAATTTTTGAATGACCTAGTTTGACTTGGAACGGAGTTTAAAAAAATAAAACAGACATTTTAAACTTGTGATTCTAAATTAAAGTTATGTCTAATGTACAAAAATGTCATTCATGCCACGTGGAAAGTTAAAGTGAAATTGTTGCCAAAAAAGCAAAGAGATTATTCTTTTGAATCAGACTAAAAAGGAAACAATGTTATTCTTTTTGAAACGGATGGAATATTTATTATATTCAAAGGGTGATACAGTAAAATTATTTTTTTATTTATATTTTCTATAGTAGACAAGTATTATTGTACATATTTTGATTTAAGATCATATAATTTAAAAAAATTGCTTTGTTTTGGTAGACTCGGTATTAGTCAAAATATGAAAAATAAATTGACAAAACGGAGGAAGTTACCATGACTATAATATTATCAATGTGATTCCACAAATGGAGTCTGTTGAACTCTTCCTTTACATGAAGGGAATGAATGCCTTAATGGAATGGAATCCGGGATCCAAGTAGATTAGGTTAAGGCAAGTATGAGTAGAGACTCTTTTCGATAACTTTGAAAAGCTTTATAACAACAACCAGTGAAAGAAATATAATAGTGAAACAAATTGTGTTTGTTTAACTACGAAGAAAGAGAAATAAATATAGTTGGACAGGTAGTAGTTGAATTATTATTGAATTTGTATAGAATATTAGATCTGAAATGTAACTTTAGTTTCCCGCAGACTAAGGAAGATGGTCTGTTTTGCCTTTTGTCTATTTTAATGTAAATGGTGGGGTTAACTGACCAAGAAAGTAAAACAGGTGTCCGAAGTTGCTACGATGAGGGAAAACGAACAGCTGAAACATTGACAATGGATTATCACAGAGGTGCAGAAGTTGAGGTTTGTGTTTTTTTTTTAACCCATAGTCCAGATTAATGTTTACTGTACTTGTTGATAATGTAGACTTCATAGATACTGTAATTGTAACTCCTCTAGTACTACATTCTCAAGAAATATAGGACATTTGTCACCTAACGGTGTGGCCTACTGGTCAATGAAGCAGGATGAGAACCATGAGTTCTCGAGTTTAAATTCCAAGAGATACAAAAACACAAGTGATATCTTACCATTTGTTCACTACGTGACACATGTTGTTGGTGTGAGGTGACAGGTTTCTTGTGTAATTAGTCGAGGTGCGAGGAAAAATAAAATTAACAATCACTCTGGAGCCAACTGTTTTATTCCTTATTGCGCATGTACTTGATCATCGATAAATGTACTTTGTATCTAGTGTTTTTAAATAATGTACTATCGGTGTAGTTTAATCTATGATAGCAAGTTAGCTACCGTTTTTATCAGGTTACTAATTACTGTTTATCATAGATATGTATCTGAAATTACCTGTTAAGTAATTTGCTGGTAAAATTGTGTCGATGTACCTATGTTGTTACAGGTGAGAATCGCTAGGATCTTTAACACTTATGGACCTCGTATGTGTATTGATGACGGTCGCGTTGTCAGCAACTTTGTCGCTCAGGTGACTCCATTATTTAAATATAAACGTAAAGTTAATGGATTCTTAAACTAAGCAACAAAAAGCTTATATAAAATTTGTTTACAGGCTTTAAGGAAAGAGCCTTTGACAGTTTATGGTGATGGGAAACAAACAAG</genome_strand>
        <mrna_strand>GATCGTCGTTGATAATTTCTTCACCGGACGGAAAGAGAACGTTATGCATCATTTTGGTAACCCTAGGTTTGAGCTTATTAGACATGATGTTGTTGAGCCACTTTTGCTTGAAGTTGACCAGATCTATCATCTCGCTTGCCCTGCTTCTCCCGTTCATTACAAGCATAATCCCGTCAAAACTATC.......................................................................................................AAGACTAATGTAGTTGGTACTTTGAACATGCTGGGATTGGCTAAAAGAGTCGGTGCGAGGTTTTTGCTAACCAGCACTAGCGAAGTATATGGTGATCCTTTAGAACATCCACAGAAGGAGACATACTGGGGCAATGTTAATCCTATTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCCGAAGTTGCTACGATGAGGGAAAACGAACAGCTGAAACATTGACAATGGATTATCACAGAGGTGCAGAAGTTGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAATCGCTAGGATCTTTAACACTTATGGACCTCGTATGTGTATTGATGACGGTCGCGTTGTCAGCAACTTTGTCGCTCAG....................................................................................GCTTTAAGGAAAGAGCCTTTGACAGTTTATGGTGATGGGAAACAAACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E303465" ref_strand="+" ref_description="SGN-E303465 [cLEX-2-I21]">
      <seq>gatcgtcgttgataatttcttcaccggacggaaagagaacgttatgcatcattttggtaaccctaggtttgagcttattagacatgatgttgttgagccacttttgcttgaagttgaccagatctatcatctggcttgccctgcttctcccgttcattacaagcataatcccgtcaaaactatcaagactaatgtagttggtactttgaacatgctgggattggctaaaagagtcggtgcgaggtttttgctaaccagcactagcgaagtatatggtgatcctttataacatccacagaaggagacatactggggcaatgttaatcctattggtgtccgaagttgctacgatgagggaaaacgaacagctgaaacattgacaatggattatcacagaggtgcagaagttgaggtgagaatcgctaggatctttaacacttatggacctcggatgtgtattgatgacggtcgcgttgtcagcaactttgtctctcaggctttaaggaaagagcctttgacagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="+" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="86468" stop="89790"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86768" g_stop="86951" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86952" i_stop="87054" i_length="103">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87055" g_stop="87202" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="332" r_length="148" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87203" i_stop="88663" i_length="1461">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88664" g_stop="88743" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="412" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88744" i_stop="89296" i_length="553">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89297" g_stop="89380" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="496" r_length="84" r_score="0.976"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89381" i_stop="89464" i_length="84">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="89465" g_stop="89490" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="522" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="+" ref_id="SGN-E303465" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303465" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86768" e_stop="86951"/>
          <exon e_start="87055" e_stop="87202"/>
          <exon e_start="88664" e_stop="88743"/>
          <exon e_start="89297" e_stop="89380"/>
          <exon e_start="89465" e_stop="89490"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCGTCGTTGATAATTTCTTCACCGGACGGAAAGAGAACGTTATGCATCATTTTGGTAACCCTAGGTTTGAGCTTATTAGACATGATGTTGTTGAGCCACTTTTGCTTGAAGTTGACCAGATCTATCATCTCGCTTGCCCTGCTTCTCCCGTTCATTACAAGCATAATCCCGTCAAAACTATCATATCCTTCTTTTTTAAAAATTATCATTAATTTTAATTACGTGCATAAAATTATATTAAATATATTATTATCATCGTTTCATCCTTGACGGATTAATTTTTACAAGACTAATGTAGTTGGTACTTTGAACATGCTGGGATTGGCTAAAAGAGTCGGTGCGAGGTTTTTGCTAACCAGCACTAGCGAAGTATATGGTGATCCTTTAGAACATCCACAGAAGGAGACATACTGGGGCAATGTTAATCCTATTGGTAAGATTTTTTAATTTCTTTTTCTATTTTCTATTTTAGTTATTTTCTTTTTAAAAAAATTCTTCAAAATCTCTTAATTTTAATTTTCACATTATATATTTTATTAAAATGCACGAATAAATTGAAACGAAAGAATTACGATGCACGTTAGCTATGGTCTTTTGATGGTTCATGGTAAAAATGTGGAGCCACGTGTTGAACGATGATGAGTGCTAATGACGTTTCTGTCCTTAGATCGGGTCGGGAAAATTATTTTAATTTAATTTTTTTTTGTCAACGATGATACCGTGATTTGCGGGTCCGGCCGCTTCATTCACCTATCTTTATGTCTTTCATTTTAATTCAATTGGCGCGCCCTTTTCTATTCAATCTTTTCTCTCTTTTATTTTGTCCTTGAAAAATTAAATTAGCTTAAGTAATTACTTTCTTGTCTTTTTCTTTTTTTCCTTTTATTTCCTTTTGAGTCTTTTGATATTTCACGTTTCGATTTGTTTGTTTAATTTTTTATTTTGTTTTAAAAAAAAGTTATGCCATGTTTAAGATAATAAAGATATAAAAATATTTTAGTATATTTCACTTCTTTCGTACGATAATAATAGTTGTTCACTATGTTATTTTGGAATGTTCAATAATATTTTTTCGTTTTATCAAATAATAGATAATTTTTGAATGACCTAGTTTGACTTGGAACGGAGTTTAAAAAAATAAAACAGACATTTTAAACTTGTGATTCTAAATTAAAGTTATGTCTAATGTACAAAAATGTCATTCATGCCACGTGGAAAGTTAAAGTGAAATTGTTGCCAAAAAAGCAAAGAGATTATTCTTTTGAATCAGACTAAAAAGGAAACAATGTTATTCTTTTTGAAACGGATGGAATATTTATTATATTCAAAGGGTGATACAGTAAAATTATTTTTTTATTTATATTTTCTATAGTAGACAAGTATTATTGTACATATTTTGATTTAAGATCATATAATTTAAAAAAATTGCTTTGTTTTGGTAGACTCGGTATTAGTCAAAATATGAAAAATAAATTGACAAAACGGAGGAAGTTACCATGACTATAATATTATCAATGTGATTCCACAAATGGAGTCTGTTGAACTCTTCCTTTACATGAAGGGAATGAATGCCTTAATGGAATGGAATCCGGGATCCAAGTAGATTAGGTTAAGGCAAGTATGAGTAGAGACTCTTTTCGATAACTTTGAAAAGCTTTATAACAACAACCAGTGAAAGAAATATAATAGTGAAACAAATTGTGTTTGTTTAACTACGAAGAAAGAGAAATAAATATAGTTGGACAGGTAGTAGTTGAATTATTATTGAATTTGTATAGAATATTAGATCTGAAATGTAACTTTAGTTTCCCGCAGACTAAGGAAGATGGTCTGTTTTGCCTTTTGTCTATTTTAATGTAAATGGTGGGGTTAACTGACCAAGAAAGTAAAACAGGTGTCCGAAGTTGCTACGATGAGGGAAAACGAACAGCTGAAACATTGACAATGGATTATCACAGAGGTGCAGAAGTTGAGGTTTGTGTTTTTTTTTTAACCCATAGTCCAGATTAATGTTTACTGTACTTGTTGATAATGTAGACTTCATAGATACTGTAATTGTAACTCCTCTAGTACTACATTCTCAAGAAATATAGGACATTTGTCACCTAACGGTGTGGCCTACTGGTCAATGAAGCAGGATGAGAACCATGAGTTCTCGAGTTTAAATTCCAAGAGATACAAAAACACAAGTGATATCTTACCATTTGTTCACTACGTGACACATGTTGTTGGTGTGAGGTGACAGGTTTCTTGTGTAATTAGTCGAGGTGCGAGGAAAAATAAAATTAACAATCACTCTGGAGCCAACTGTTTTATTCCTTATTGCGCATGTACTTGATCATCGATAAATGTACTTTGTATCTAGTGTTTTTAAATAATGTACTATCGGTGTAGTTTAATCTATGATAGCAAGTTAGCTACCGTTTTTATCAGGTTACTAATTACTGTTTATCATAGATATGTATCTGAAATTACCTGTTAAGTAATTTGCTGGTAAAATTGTGTCGATGTACCTATGTTGTTACAGGTGAGAATCGCTAGGATCTTTAACACTTATGGACCTCGTATGTGTATTGATGACGGTCGCGTTGTCAGCAACTTTGTCGCTCAGGTGACTCCATTATTTAAATATAAACGTAAAGTTAATGGATTCTTAAACTAAGCAACAAAAAGCTTATATAAAATTTGTTTACAGGCTTTAAGGAAAGAGCCTTTGACAGT</genome_strand>
        <mrna_strand>GATCGTCGTTGATAATTTCTTCACCGGACGGAAAGAGAACGTTATGCATCATTTTGGTAACCCTAGGTTTGAGCTTATTAGACATGATGTTGTTGAGCCACTTTTGCTTGAAGTTGACCAGATCTATCATCTGGCTTGCCCTGCTTCTCCCGTTCATTACAAGCATAATCCCGTCAAAACTATC.......................................................................................................AAGACTAATGTAGTTGGTACTTTGAACATGCTGGGATTGGCTAAAAGAGTCGGTGCGAGGTTTTTGCTAACCAGCACTAGCGAAGTATATGGTGATCCTTTATAACATCCACAGAAGGAGACATACTGGGGCAATGTTAATCCTATTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCCGAAGTTGCTACGATGAGGGAAAACGAACAGCTGAAACATTGACAATGGATTATCACAGAGGTGCAGAAGTTGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAATCGCTAGGATCTTTAACACTTATGGACCTCGGATGTGTATTGATGACGGTCGCGTTGTCAGCAACTTTGTCTCTCAG....................................................................................GCTTTAAGGAAAGAGCCTTTGACAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E240852" ref_strand="+" ref_description="SGN-E240852 [cLED-24-H12]">
      <seq>tatgcatcattttggtaaccctaggtttgagcttattagacatgatgttgttgagccacttttgcttgaagttgaccagatctatcatctcgcttgccctgcttctcccgttcattacaagcataatcccgtcaaaactatcaagactaatgtagttggtactttgaacatgctgggattggctaaaagagtcggtgcgaggtttttgctaaccagcactagcgaagtatatggtgatcctttagaacatccacagaaggagacatactggggcaatgttaatcctattggtgtccgaagttgctacgatgagggaaaacgaacagctgaaacattgacaatggattatcacagaggtgcagaagttgaggtgagaatcgctaggatctttaacacttatggacctcgtatgtgtattgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="+" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="86510" stop="89649"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86810" g_stop="86951" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86952" i_stop="87054" i_length="103">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87055" g_stop="87202" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="290" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87203" i_stop="88663" i_length="1461">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88664" g_stop="88743" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="370" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88744" i_stop="89296" i_length="553">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89297" g_stop="89349" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="423" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="+" ref_id="SGN-E240852" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240852" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86810" e_stop="86951"/>
          <exon e_start="87055" e_stop="87202"/>
          <exon e_start="88664" e_stop="88743"/>
          <exon e_start="89297" e_stop="89349"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGCATCATTTTGGTAACCCTAGGTTTGAGCTTATTAGACATGATGTTGTTGAGCCACTTTTGCTTGAAGTTGACCAGATCTATCATCTCGCTTGCCCTGCTTCTCCCGTTCATTACAAGCATAATCCCGTCAAAACTATCATATCCTTCTTTTTTAAAAATTATCATTAATTTTAATTACGTGCATAAAATTATATTAAATATATTATTATCATCGTTTCATCCTTGACGGATTAATTTTTACAAGACTAATGTAGTTGGTACTTTGAACATGCTGGGATTGGCTAAAAGAGTCGGTGCGAGGTTTTTGCTAACCAGCACTAGCGAAGTATATGGTGATCCTTTAGAACATCCACAGAAGGAGACATACTGGGGCAATGTTAATCCTATTGGTAAGATTTTTTAATTTCTTTTTCTATTTTCTATTTTAGTTATTTTCTTTTTAAAAAAATTCTTCAAAATCTCTTAATTTTAATTTTCACATTATATATTTTATTAAAATGCACGAATAAATTGAAACGAAAGAATTACGATGCACGTTAGCTATGGTCTTTTGATGGTTCATGGTAAAAATGTGGAGCCACGTGTTGAACGATGATGAGTGCTAATGACGTTTCTGTCCTTAGATCGGGTCGGGAAAATTATTTTAATTTAATTTTTTTTTGTCAACGATGATACCGTGATTTGCGGGTCCGGCCGCTTCATTCACCTATCTTTATGTCTTTCATTTTAATTCAATTGGCGCGCCCTTTTCTATTCAATCTTTTCTCTCTTTTATTTTGTCCTTGAAAAATTAAATTAGCTTAAGTAATTACTTTCTTGTCTTTTTCTTTTTTTCCTTTTATTTCCTTTTGAGTCTTTTGATATTTCACGTTTCGATTTGTTTGTTTAATTTTTTATTTTGTTTTAAAAAAAAGTTATGCCATGTTTAAGATAATAAAGATATAAAAATATTTTAGTATATTTCACTTCTTTCGTACGATAATAATAGTTGTTCACTATGTTATTTTGGAATGTTCAATAATATTTTTTCGTTTTATCAAATAATAGATAATTTTTGAATGACCTAGTTTGACTTGGAACGGAGTTTAAAAAAATAAAACAGACATTTTAAACTTGTGATTCTAAATTAAAGTTATGTCTAATGTACAAAAATGTCATTCATGCCACGTGGAAAGTTAAAGTGAAATTGTTGCCAAAAAAGCAAAGAGATTATTCTTTTGAATCAGACTAAAAAGGAAACAATGTTATTCTTTTTGAAACGGATGGAATATTTATTATATTCAAAGGGTGATACAGTAAAATTATTTTTTTATTTATATTTTCTATAGTAGACAAGTATTATTGTACATATTTTGATTTAAGATCATATAATTTAAAAAAATTGCTTTGTTTTGGTAGACTCGGTATTAGTCAAAATATGAAAAATAAATTGACAAAACGGAGGAAGTTACCATGACTATAATATTATCAATGTGATTCCACAAATGGAGTCTGTTGAACTCTTCCTTTACATGAAGGGAATGAATGCCTTAATGGAATGGAATCCGGGATCCAAGTAGATTAGGTTAAGGCAAGTATGAGTAGAGACTCTTTTCGATAACTTTGAAAAGCTTTATAACAACAACCAGTGAAAGAAATATAATAGTGAAACAAATTGTGTTTGTTTAACTACGAAGAAAGAGAAATAAATATAGTTGGACAGGTAGTAGTTGAATTATTATTGAATTTGTATAGAATATTAGATCTGAAATGTAACTTTAGTTTCCCGCAGACTAAGGAAGATGGTCTGTTTTGCCTTTTGTCTATTTTAATGTAAATGGTGGGGTTAACTGACCAAGAAAGTAAAACAGGTGTCCGAAGTTGCTACGATGAGGGAAAACGAACAGCTGAAACATTGACAATGGATTATCACAGAGGTGCAGAAGTTGAGGTTTGTGTTTTTTTTTTAACCCATAGTCCAGATTAATGTTTACTGTACTTGTTGATAATGTAGACTTCATAGATACTGTAATTGTAACTCCTCTAGTACTACATTCTCAAGAAATATAGGACATTTGTCACCTAACGGTGTGGCCTACTGGTCAATGAAGCAGGATGAGAACCATGAGTTCTCGAGTTTAAATTCCAAGAGATACAAAAACACAAGTGATATCTTACCATTTGTTCACTACGTGACACATGTTGTTGGTGTGAGGTGACAGGTTTCTTGTGTAATTAGTCGAGGTGCGAGGAAAAATAAAATTAACAATCACTCTGGAGCCAACTGTTTTATTCCTTATTGCGCATGTACTTGATCATCGATAAATGTACTTTGTATCTAGTGTTTTTAAATAATGTACTATCGGTGTAGTTTAATCTATGATAGCAAGTTAGCTACCGTTTTTATCAGGTTACTAATTACTGTTTATCATAGATATGTATCTGAAATTACCTGTTAAGTAATTTGCTGGTAAAATTGTGTCGATGTACCTATGTTGTTACAGGTGAGAATCGCTAGGATCTTTAACACTTATGGACCTCGTATGTGTATTGATGA</genome_strand>
        <mrna_strand>TATGCATCATTTTGGTAACCCTAGGTTTGAGCTTATTAGACATGATGTTGTTGAGCCACTTTTGCTTGAAGTTGACCAGATCTATCATCTCGCTTGCCCTGCTTCTCCCGTTCATTACAAGCATAATCCCGTCAAAACTATC.......................................................................................................AAGACTAATGTAGTTGGTACTTTGAACATGCTGGGATTGGCTAAAAGAGTCGGTGCGAGGTTTTTGCTAACCAGCACTAGCGAAGTATATGGTGATCCTTTAGAACATCCACAGAAGGAGACATACTGGGGCAATGTTAATCCTATTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCCGAAGTTGCTACGATGAGGGAAAACGAACAGCTGAAACATTGACAATGGATTATCACAGAGGTGCAGAAGTTGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAATCGCTAGGATCTTTAACACTTATGGACCTCGTATGTGTATTGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E331410" ref_strand="+" ref_description="SGN-E331410 [cTOD-9-L13]">
      <seq>tcattttggtaaccctaggtttgagcttattagacatgatgttgttgagccacttttgcttgaagttgaccagatctatcatctcgcttgccctgcttctcccgttcattacaagcataatcccgtcaaaactatcaagactaatgtagttggtactttgaacatgctgggattggctaaaagagtcggtgcgaggtttttgctaaccagcactagcgaagtatatggtgatcctttagaacatccacagaaggagacatactggggcaatgttaatcctattggtgtccgaagttgctacgatgagggaaaacgaacagctgaaacattgacaatggattatcacagaggtgcagaagttgaggtgagaatcgctaggatctttaacacttatggacctcgtatgtgtattgatgacggtcgcgttgtcagcaactttgtcgctcaagctttaaggaaagagcctttgacagtttatggtgatgggaaacaaacaagaagtttccaatttgtttcagatctggttgaaggcttaatgcggttgatggaaggagaacatgtcggacccttcaacctcggaaaccctggtgaattcacaatgcttgaacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="+" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="86516" stop="90432"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86816" g_stop="86951" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86952" i_stop="87054" i_length="103">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87055" g_stop="87202" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="284" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87203" i_stop="88663" i_length="1461">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88664" g_stop="88743" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="364" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88744" i_stop="89296" i_length="553">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89297" g_stop="89380" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="448" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89381" i_stop="89464" i_length="84">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="89465" g_stop="89539" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="523" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="89540" i_stop="90044" i_length="505">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="90045" g_stop="90132" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="611" r_length="88" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="+" ref_id="SGN-E331410" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331410" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86816" e_stop="86951"/>
          <exon e_start="87055" e_stop="87202"/>
          <exon e_start="88664" e_stop="88743"/>
          <exon e_start="89297" e_stop="89380"/>
          <exon e_start="89465" e_stop="89539"/>
          <exon e_start="90045" e_stop="90132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTTTGGTAACCCTAGGTTTGAGCTTATTAGACATGATGTTGTTGAGCCACTTTTGCTTGAAGTTGACCAGATCTATCATCTCGCTTGCCCTGCTTCTCCCGTTCATTACAAGCATAATCCCGTCAAAACTATCATATCCTTCTTTTTTAAAAATTATCATTAATTTTAATTACGTGCATAAAATTATATTAAATATATTATTATCATCGTTTCATCCTTGACGGATTAATTTTTACAAGACTAATGTAGTTGGTACTTTGAACATGCTGGGATTGGCTAAAAGAGTCGGTGCGAGGTTTTTGCTAACCAGCACTAGCGAAGTATATGGTGATCCTTTAGAACATCCACAGAAGGAGACATACTGGGGCAATGTTAATCCTATTGGTAAGATTTTTTAATTTCTTTTTCTATTTTCTATTTTAGTTATTTTCTTTTTAAAAAAATTCTTCAAAATCTCTTAATTTTAATTTTCACATTATATATTTTATTAAAATGCACGAATAAATTGAAACGAAAGAATTACGATGCACGTTAGCTATGGTCTTTTGATGGTTCATGGTAAAAATGTGGAGCCACGTGTTGAACGATGATGAGTGCTAATGACGTTTCTGTCCTTAGATCGGGTCGGGAAAATTATTTTAATTTAATTTTTTTTTGTCAACGATGATACCGTGATTTGCGGGTCCGGCCGCTTCATTCACCTATCTTTATGTCTTTCATTTTAATTCAATTGGCGCGCCCTTTTCTATTCAATCTTTTCTCTCTTTTATTTTGTCCTTGAAAAATTAAATTAGCTTAAGTAATTACTTTCTTGTCTTTTTCTTTTTTTCCTTTTATTTCCTTTTGAGTCTTTTGATATTTCACGTTTCGATTTGTTTGTTTAATTTTTTATTTTGTTTTAAAAAAAAGTTATGCCATGTTTAAGATAATAAAGATATAAAAATATTTTAGTATATTTCACTTCTTTCGTACGATAATAATAGTTGTTCACTATGTTATTTTGGAATGTTCAATAATATTTTTTCGTTTTATCAAATAATAGATAATTTTTGAATGACCTAGTTTGACTTGGAACGGAGTTTAAAAAAATAAAACAGACATTTTAAACTTGTGATTCTAAATTAAAGTTATGTCTAATGTACAAAAATGTCATTCATGCCACGTGGAAAGTTAAAGTGAAATTGTTGCCAAAAAAGCAAAGAGATTATTCTTTTGAATCAGACTAAAAAGGAAACAATGTTATTCTTTTTGAAACGGATGGAATATTTATTATATTCAAAGGGTGATACAGTAAAATTATTTTTTTATTTATATTTTCTATAGTAGACAAGTATTATTGTACATATTTTGATTTAAGATCATATAATTTAAAAAAATTGCTTTGTTTTGGTAGACTCGGTATTAGTCAAAATATGAAAAATAAATTGACAAAACGGAGGAAGTTACCATGACTATAATATTATCAATGTGATTCCACAAATGGAGTCTGTTGAACTCTTCCTTTACATGAAGGGAATGAATGCCTTAATGGAATGGAATCCGGGATCCAAGTAGATTAGGTTAAGGCAAGTATGAGTAGAGACTCTTTTCGATAACTTTGAAAAGCTTTATAACAACAACCAGTGAAAGAAATATAATAGTGAAACAAATTGTGTTTGTTTAACTACGAAGAAAGAGAAATAAATATAGTTGGACAGGTAGTAGTTGAATTATTATTGAATTTGTATAGAATATTAGATCTGAAATGTAACTTTAGTTTCCCGCAGACTAAGGAAGATGGTCTGTTTTGCCTTTTGTCTATTTTAATGTAAATGGTGGGGTTAACTGACCAAGAAAGTAAAACAGGTGTCCGAAGTTGCTACGATGAGGGAAAACGAACAGCTGAAACATTGACAATGGATTATCACAGAGGTGCAGAAGTTGAGGTTTGTGTTTTTTTTTTAACCCATAGTCCAGATTAATGTTTACTGTACTTGTTGATAATGTAGACTTCATAGATACTGTAATTGTAACTCCTCTAGTACTACATTCTCAAGAAATATAGGACATTTGTCACCTAACGGTGTGGCCTACTGGTCAATGAAGCAGGATGAGAACCATGAGTTCTCGAGTTTAAATTCCAAGAGATACAAAAACACAAGTGATATCTTACCATTTGTTCACTACGTGACACATGTTGTTGGTGTGAGGTGACAGGTTTCTTGTGTAATTAGTCGAGGTGCGAGGAAAAATAAAATTAACAATCACTCTGGAGCCAACTGTTTTATTCCTTATTGCGCATGTACTTGATCATCGATAAATGTACTTTGTATCTAGTGTTTTTAAATAATGTACTATCGGTGTAGTTTAATCTATGATAGCAAGTTAGCTACCGTTTTTATCAGGTTACTAATTACTGTTTATCATAGATATGTATCTGAAATTACCTGTTAAGTAATTTGCTGGTAAAATTGTGTCGATGTACCTATGTTGTTACAGGTGAGAATCGCTAGGATCTTTAACACTTATGGACCTCGTATGTGTATTGATGACGGTCGCGTTGTCAGCAACTTTGTCGCTCAGGTGACTCCATTATTTAAATATAAACGTAAAGTTAATGGATTCTTAAACTAAGCAACAAAAAGCTTATATAAAATTTGTTTACAGGCTTTAAGGAAAGAGCCTTTGACAGTTTATGGTGATGGGAAACAAACAAGAAGTTTCCAATTTGTTTCAGATCTGGTACTTTTCTCTCTGTTCTTCGTTTTTTTTTTAGCTTTTTTAATACGTTACCTTATTAGTTTTATATGCATTCTTTCGAAGTGGCTTTCAAATGTAAGATTCTTTAATAATTTGACTTGCCATCTAGCTTACAGTTTACAACATGATTAGAAAATAAATAAATTAATATCTAAAGTAGGGTCCCCCTACTCTGTTGCAAGGTAAAATATTGTAGTGTGGAAGCACATGCCATGTCTAAGTAGAAGCCAGATACCTGGGACCCGTATTTTTATTTCTATGTACTCCTTCTGTCTCAATTTACGAGATGTAGTTTTGATTGGACACGGAGTTCAAGAAATATGTGTGAAGACTTTGCAATGTTCCGAAGTTATGCTTAAAAAGAGTGTACCTTTGTGGAACTTTTATCAAGCAGTAAAACAGTAATAAAAGTATAAAAACCATGGTTTGTGACCTTGATATAACATAAGAAGGAATCTAAACTTGCTTTATTTTGGTTAATGTGAAGGTTGAAGGCTTAATGCGGTTGATGGAAGGAGAACATGTCGGACCCTTCAACCTCGGAAACCCTGGTGAATTCACAATGCTTGAACTTG</genome_strand>
        <mrna_strand>TCATTTTGGTAACCCTAGGTTTGAGCTTATTAGACATGATGTTGTTGAGCCACTTTTGCTTGAAGTTGACCAGATCTATCATCTCGCTTGCCCTGCTTCTCCCGTTCATTACAAGCATAATCCCGTCAAAACTATC.......................................................................................................AAGACTAATGTAGTTGGTACTTTGAACATGCTGGGATTGGCTAAAAGAGTCGGTGCGAGGTTTTTGCTAACCAGCACTAGCGAAGTATATGGTGATCCTTTAGAACATCCACAGAAGGAGACATACTGGGGCAATGTTAATCCTATTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCCGAAGTTGCTACGATGAGGGAAAACGAACAGCTGAAACATTGACAATGGATTATCACAGAGGTGCAGAAGTTGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAATCGCTAGGATCTTTAACACTTATGGACCTCGTATGTGTATTGATGACGGTCGCGTTGTCAGCAACTTTGTCGCTCAA....................................................................................GCTTTAAGGAAAGAGCCTTTGACAGTTTATGGTGATGGGAAACAAACAAGAAGTTTCCAATTTGTTTCAGATCTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAGGCTTAATGCGGTTGATGGAAGGAGAACATGTCGGACCCTTCAACCTCGGAAACCCTGGTGAATTCACAATGCTTGAACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E459157" ref_strand="+" ref_description="SGN-E459157 [cPRO-27-C5]">
      <seq>taaccctaggtttgagcttattagacacgatgttgttgagccacttttgcttgaagttgaccagatctatcatctcgcttgccctgcttctcccgttcattacaagcataatcccgtcaagactattaagactaatgtggtggggactttgaacatgctgggattggctaaaagagtcggtgcgaggtttttgctgacgagcaccagcgaggtgtacggtgatcctttagaacatccacagaaggagacatactggggcaatgttaatcctattggtgtccgaagttgctacgatgagggaaaacgtacagctgaaacattgaccatggattatcacagaggtgctgaagttgaggtgagaattgctaggatctttaacacttatggacctcgtatgtgcattgatgatggtcgcgttgtcagcaactttgtcgctcaggctttaaggaaggagcctttgacagtttatggtgatgggaaacaaacaagaagtttccaatttgtttcagatctggttgaanggcctatgcggttgatggaangagaacatgtcggacccttcaacctcggaaaccctggtgattcacaatgcttgaacttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="+" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="86525" stop="90434"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86825" g_stop="86951" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86952" i_stop="87054" i_length="103">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87055" g_stop="87202" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="275" r_length="148" r_score="0.939"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87203" i_stop="88663" i_length="1461">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88664" g_stop="88743" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="355" r_length="80" r_score="0.962"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88744" i_stop="89296" i_length="553">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89297" g_stop="89380" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="439" r_length="84" r_score="0.964"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89381" i_stop="89464" i_length="84">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="89465" g_stop="89539" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="514" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="89540" i_stop="90044" i_length="505">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="90045" g_stop="90134" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="603" r_length="89" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="+" ref_id="SGN-E459157" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E459157" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86825" e_stop="86951"/>
          <exon e_start="87055" e_stop="87202"/>
          <exon e_start="88664" e_stop="88743"/>
          <exon e_start="89297" e_stop="89380"/>
          <exon e_start="89465" e_stop="89539"/>
          <exon e_start="90045" e_stop="90134"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACCCTAGGTTTGAGCTTATTAGACATGATGTTGTTGAGCCACTTTTGCTTGAAGTTGACCAGATCTATCATCTCGCTTGCCCTGCTTCTCCCGTTCATTACAAGCATAATCCCGTCAAAACTATCATATCCTTCTTTTTTAAAAATTATCATTAATTTTAATTACGTGCATAAAATTATATTAAATATATTATTATCATCGTTTCATCCTTGACGGATTAATTTTTACAAGACTAATGTAGTTGGTACTTTGAACATGCTGGGATTGGCTAAAAGAGTCGGTGCGAGGTTTTTGCTAACCAGCACTAGCGAAGTATATGGTGATCCTTTAGAACATCCACAGAAGGAGACATACTGGGGCAATGTTAATCCTATTGGTAAGATTTTTTAATTTCTTTTTCTATTTTCTATTTTAGTTATTTTCTTTTTAAAAAAATTCTTCAAAATCTCTTAATTTTAATTTTCACATTATATATTTTATTAAAATGCACGAATAAATTGAAACGAAAGAATTACGATGCACGTTAGCTATGGTCTTTTGATGGTTCATGGTAAAAATGTGGAGCCACGTGTTGAACGATGATGAGTGCTAATGACGTTTCTGTCCTTAGATCGGGTCGGGAAAATTATTTTAATTTAATTTTTTTTTGTCAACGATGATACCGTGATTTGCGGGTCCGGCCGCTTCATTCACCTATCTTTATGTCTTTCATTTTAATTCAATTGGCGCGCCCTTTTCTATTCAATCTTTTCTCTCTTTTATTTTGTCCTTGAAAAATTAAATTAGCTTAAGTAATTACTTTCTTGTCTTTTTCTTTTTTTCCTTTTATTTCCTTTTGAGTCTTTTGATATTTCACGTTTCGATTTGTTTGTTTAATTTTTTATTTTGTTTTAAAAAAAAGTTATGCCATGTTTAAGATAATAAAGATATAAAAATATTTTAGTATATTTCACTTCTTTCGTACGATAATAATAGTTGTTCACTATGTTATTTTGGAATGTTCAATAATATTTTTTCGTTTTATCAAATAATAGATAATTTTTGAATGACCTAGTTTGACTTGGAACGGAGTTTAAAAAAATAAAACAGACATTTTAAACTTGTGATTCTAAATTAAAGTTATGTCTAATGTACAAAAATGTCATTCATGCCACGTGGAAAGTTAAAGTGAAATTGTTGCCAAAAAAGCAAAGAGATTATTCTTTTGAATCAGACTAAAAAGGAAACAATGTTATTCTTTTTGAAACGGATGGAATATTTATTATATTCAAAGGGTGATACAGTAAAATTATTTTTTTATTTATATTTTCTATAGTAGACAAGTATTATTGTACATATTTTGATTTAAGATCATATAATTTAAAAAAATTGCTTTGTTTTGGTAGACTCGGTATTAGTCAAAATATGAAAAATAAATTGACAAAACGGAGGAAGTTACCATGACTATAATATTATCAATGTGATTCCACAAATGGAGTCTGTTGAACTCTTCCTTTACATGAAGGGAATGAATGCCTTAATGGAATGGAATCCGGGATCCAAGTAGATTAGGTTAAGGCAAGTATGAGTAGAGACTCTTTTCGATAACTTTGAAAAGCTTTATAACAACAACCAGTGAAAGAAATATAATAGTGAAACAAATTGTGTTTGTTTAACTACGAAGAAAGAGAAATAAATATAGTTGGACAGGTAGTAGTTGAATTATTATTGAATTTGTATAGAATATTAGATCTGAAATGTAACTTTAGTTTCCCGCAGACTAAGGAAGATGGTCTGTTTTGCCTTTTGTCTATTTTAATGTAAATGGTGGGGTTAACTGACCAAGAAAGTAAAACAGGTGTCCGAAGTTGCTACGATGAGGGAAAACGAACAGCTGAAACATTGACAATGGATTATCACAGAGGTGCAGAAGTTGAGGTTTGTGTTTTTTTTTTAACCCATAGTCCAGATTAATGTTTACTGTACTTGTTGATAATGTAGACTTCATAGATACTGTAATTGTAACTCCTCTAGTACTACATTCTCAAGAAATATAGGACATTTGTCACCTAACGGTGTGGCCTACTGGTCAATGAAGCAGGATGAGAACCATGAGTTCTCGAGTTTAAATTCCAAGAGATACAAAAACACAAGTGATATCTTACCATTTGTTCACTACGTGACACATGTTGTTGGTGTGAGGTGACAGGTTTCTTGTGTAATTAGTCGAGGTGCGAGGAAAAATAAAATTAACAATCACTCTGGAGCCAACTGTTTTATTCCTTATTGCGCATGTACTTGATCATCGATAAATGTACTTTGTATCTAGTGTTTTTAAATAATGTACTATCGGTGTAGTTTAATCTATGATAGCAAGTTAGCTACCGTTTTTATCAGGTTACTAATTACTGTTTATCATAGATATGTATCTGAAATTACCTGTTAAGTAATTTGCTGGTAAAATTGTGTCGATGTACCTATGTTGTTACAGGTGAGAATCGCTAGGATCTTTAACACTTATGGACCTCGTATGTGTATTGATGACGGTCGCGTTGTCAGCAACTTTGTCGCTCAGGTGACTCCATTATTTAAATATAAACGTAAAGTTAATGGATTCTTAAACTAAGCAACAAAAAGCTTATATAAAATTTGTTTACAGGCTTTAAGGAAAGAGCCTTTGACAGTTTATGGTGATGGGAAACAAACAAGAAGTTTCCAATTTGTTTCAGATCTGGTACTTTTCTCTCTGTTCTTCGTTTTTTTTTTAGCTTTTTTAATACGTTACCTTATTAGTTTTATATGCATTCTTTCGAAGTGGCTTTCAAATGTAAGATTCTTTAATAATTTGACTTGCCATCTAGCTTACAGTTTACAACATGATTAGAAAATAAATAAATTAATATCTAAAGTAGGGTCCCCCTACTCTGTTGCAAGGTAAAATATTGTAGTGTGGAAGCACATGCCATGTCTAAGTAGAAGCCAGATACCTGGGACCCGTATTTTTATTTCTATGTACTCCTTCTGTCTCAATTTACGAGATGTAGTTTTGATTGGACACGGAGTTCAAGAAATATGTGTGAAGACTTTGCAATGTTCCGAAGTTATGCTTAAAAAGAGTGTACCTTTGTGGAACTTTTATCAAGCAGTAAAACAGTAATAAAAGTATAAAAACCATGGTTTGTGACCTTGATATAACATAAGAAGGAATCTAAACTTGCTTTATTTTGGTTAATGTGAAGGTTGAAGGCTTAATGCGGTTGATGGAAGGAGAACATGTCGGACCCTTCAACCTCGGAAACCCTGGTGAATTCACAATGCTTGAACTTGCT</genome_strand>
        <mrna_strand>TAACCCTAGGTTTGAGCTTATTAGACACGATGTTGTTGAGCCACTTTTGCTTGAAGTTGACCAGATCTATCATCTCGCTTGCCCTGCTTCTCCCGTTCATTACAAGCATAATCCCGTCAAGACTATT.......................................................................................................AAGACTAATGTGGTGGGGACTTTGAACATGCTGGGATTGGCTAAAAGAGTCGGTGCGAGGTTTTTGCTGACGAGCACCAGCGAGGTGTACGGTGATCCTTTAGAACATCCACAGAAGGAGACATACTGGGGCAATGTTAATCCTATTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCCGAAGTTGCTACGATGAGGGAAAACGTACAGCTGAAACATTGACCATGGATTATCACAGAGGTGCTGAAGTTGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAATTGCTAGGATCTTTAACACTTATGGACCTCGTATGTGCATTGATGATGGTCGCGTTGTCAGCAACTTTGTCGCTCAG....................................................................................GCTTTAAGGAAGGAGCCTTTGACAGTTTATGGTGATGGGAAACAAACAAGAAGTTTCCAATTTGTTTCAGATCTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAANGGCCTATGCGGTTGATGGAANGAGAACATGTCGGACCCTTCAACCTCGGAAACCCTGGTG-ATTCACAATGCTTGAACTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E200737" ref_strand="+" ref_description="SGN-E200737 [cLEC-9-I23]">
      <seq>tgaccagatctatcatctcgcttgccctgcttctcccgttcattacaagcataatcccgtcaaaactatcaagactaatgtagttggtactttgaacatgctgggattggctaaaagagtcggtgcgaggtttttgctaaccagcactagcgaagtatatggtgatcctttagaacatccacagaaggagacatactggggcaatgttaatcctattggtgtccgaagttgctacgatgagggaaaacgaacagctgaaacattgacaatggattatcacagaggtgcagaagttgaggtgagaatcgctaggatctttaacacttatggacctcgtatgtgtattgatgacggtcgcgttgtcagcaactttgtcgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="+" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="86582" stop="89676"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86882" g_stop="86951" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86952" i_stop="87054" i_length="103">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87055" g_stop="87202" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="218" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87203" i_stop="88663" i_length="1461">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88664" g_stop="88743" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="298" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88744" i_stop="89296" i_length="553">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89297" g_stop="89374" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="376" r_length="78" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="+" ref_id="SGN-E200737" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>376</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200737" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86882" e_stop="86951"/>
          <exon e_start="87055" e_stop="87202"/>
          <exon e_start="88664" e_stop="88743"/>
          <exon e_start="89297" e_stop="89374"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACCAGATCTATCATCTCGCTTGCCCTGCTTCTCCCGTTCATTACAAGCATAATCCCGTCAAAACTATCATATCCTTCTTTTTTAAAAATTATCATTAATTTTAATTACGTGCATAAAATTATATTAAATATATTATTATCATCGTTTCATCCTTGACGGATTAATTTTTACAAGACTAATGTAGTTGGTACTTTGAACATGCTGGGATTGGCTAAAAGAGTCGGTGCGAGGTTTTTGCTAACCAGCACTAGCGAAGTATATGGTGATCCTTTAGAACATCCACAGAAGGAGACATACTGGGGCAATGTTAATCCTATTGGTAAGATTTTTTAATTTCTTTTTCTATTTTCTATTTTAGTTATTTTCTTTTTAAAAAAATTCTTCAAAATCTCTTAATTTTAATTTTCACATTATATATTTTATTAAAATGCACGAATAAATTGAAACGAAAGAATTACGATGCACGTTAGCTATGGTCTTTTGATGGTTCATGGTAAAAATGTGGAGCCACGTGTTGAACGATGATGAGTGCTAATGACGTTTCTGTCCTTAGATCGGGTCGGGAAAATTATTTTAATTTAATTTTTTTTTGTCAACGATGATACCGTGATTTGCGGGTCCGGCCGCTTCATTCACCTATCTTTATGTCTTTCATTTTAATTCAATTGGCGCGCCCTTTTCTATTCAATCTTTTCTCTCTTTTATTTTGTCCTTGAAAAATTAAATTAGCTTAAGTAATTACTTTCTTGTCTTTTTCTTTTTTTCCTTTTATTTCCTTTTGAGTCTTTTGATATTTCACGTTTCGATTTGTTTGTTTAATTTTTTATTTTGTTTTAAAAAAAAGTTATGCCATGTTTAAGATAATAAAGATATAAAAATATTTTAGTATATTTCACTTCTTTCGTACGATAATAATAGTTGTTCACTATGTTATTTTGGAATGTTCAATAATATTTTTTCGTTTTATCAAATAATAGATAATTTTTGAATGACCTAGTTTGACTTGGAACGGAGTTTAAAAAAATAAAACAGACATTTTAAACTTGTGATTCTAAATTAAAGTTATGTCTAATGTACAAAAATGTCATTCATGCCACGTGGAAAGTTAAAGTGAAATTGTTGCCAAAAAAGCAAAGAGATTATTCTTTTGAATCAGACTAAAAAGGAAACAATGTTATTCTTTTTGAAACGGATGGAATATTTATTATATTCAAAGGGTGATACAGTAAAATTATTTTTTTATTTATATTTTCTATAGTAGACAAGTATTATTGTACATATTTTGATTTAAGATCATATAATTTAAAAAAATTGCTTTGTTTTGGTAGACTCGGTATTAGTCAAAATATGAAAAATAAATTGACAAAACGGAGGAAGTTACCATGACTATAATATTATCAATGTGATTCCACAAATGGAGTCTGTTGAACTCTTCCTTTACATGAAGGGAATGAATGCCTTAATGGAATGGAATCCGGGATCCAAGTAGATTAGGTTAAGGCAAGTATGAGTAGAGACTCTTTTCGATAACTTTGAAAAGCTTTATAACAACAACCAGTGAAAGAAATATAATAGTGAAACAAATTGTGTTTGTTTAACTACGAAGAAAGAGAAATAAATATAGTTGGACAGGTAGTAGTTGAATTATTATTGAATTTGTATAGAATATTAGATCTGAAATGTAACTTTAGTTTCCCGCAGACTAAGGAAGATGGTCTGTTTTGCCTTTTGTCTATTTTAATGTAAATGGTGGGGTTAACTGACCAAGAAAGTAAAACAGGTGTCCGAAGTTGCTACGATGAGGGAAAACGAACAGCTGAAACATTGACAATGGATTATCACAGAGGTGCAGAAGTTGAGGTTTGTGTTTTTTTTTTAACCCATAGTCCAGATTAATGTTTACTGTACTTGTTGATAATGTAGACTTCATAGATACTGTAATTGTAACTCCTCTAGTACTACATTCTCAAGAAATATAGGACATTTGTCACCTAACGGTGTGGCCTACTGGTCAATGAAGCAGGATGAGAACCATGAGTTCTCGAGTTTAAATTCCAAGAGATACAAAAACACAAGTGATATCTTACCATTTGTTCACTACGTGACACATGTTGTTGGTGTGAGGTGACAGGTTTCTTGTGTAATTAGTCGAGGTGCGAGGAAAAATAAAATTAACAATCACTCTGGAGCCAACTGTTTTATTCCTTATTGCGCATGTACTTGATCATCGATAAATGTACTTTGTATCTAGTGTTTTTAAATAATGTACTATCGGTGTAGTTTAATCTATGATAGCAAGTTAGCTACCGTTTTTATCAGGTTACTAATTACTGTTTATCATAGATATGTATCTGAAATTACCTGTTAAGTAATTTGCTGGTAAAATTGTGTCGATGTACCTATGTTGTTACAGGTGAGAATCGCTAGGATCTTTAACACTTATGGACCTCGTATGTGTATTGATGACGGTCGCGTTGTCAGCAACTTTGTC</genome_strand>
        <mrna_strand>TGACCAGATCTATCATCTCGCTTGCCCTGCTTCTCCCGTTCATTACAAGCATAATCCCGTCAAAACTATC.......................................................................................................AAGACTAATGTAGTTGGTACTTTGAACATGCTGGGATTGGCTAAAAGAGTCGGTGCGAGGTTTTTGCTAACCAGCACTAGCGAAGTATATGGTGATCCTTTAGAACATCCACAGAAGGAGACATACTGGGGCAATGTTAATCCTATTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCCGAAGTTGCTACGATGAGGGAAAACGAACAGCTGAAACATTGACAATGGATTATCACAGAGGTGCAGAAGTTGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAATCGCTAGGATCTTTAACACTTATGGACCTCGTATGTGTATTGATGACGGTCGCGTTGTCAGCAACTTTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E222980" ref_strand="+" ref_description="SGN-E222980 [cLEL-14-E17](-)">
      <seq>actatcaagactaatgtagttggtactttgaacatgctgggattggctaaaagagtcggtgcgaggtttttgctaaccagcactagcgaagtatatggtgatcctttagaacatccacagaaggagacatactggggcaatgttaatcctattggtgtccgaagatgctacgatgagggaaagcgaacagctgaaacattgacaatggattatcacagaggtgcagaagttgaggtgagaatcgctaggatctttaacacttatggacctcgtatgtgtattgatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="+" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="86752" stop="89648"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86946" g_stop="86951" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="6" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86952" i_stop="87054" i_length="103">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87055" g_stop="87202" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="154" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87203" i_stop="88663" i_length="1461">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88664" g_stop="88743" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="234" r_length="80" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88744" i_stop="89296" i_length="553">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89297" g_stop="89349" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="287" r_length="53" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="+" ref_id="SGN-E222980" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>287</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E222980" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86946" e_stop="86951"/>
          <exon e_start="87055" e_stop="87202"/>
          <exon e_start="88664" e_stop="88743"/>
          <exon e_start="89297" e_stop="89349"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTATCATATCCTTCTTTTTTAAAAATTATCATTAATTTTAATTACGTGCATAAAATTATATTAAATATATTATTATCATCGTTTCATCCTTGACGGATTAATTTTTACAAGACTAATGTAGTTGGTACTTTGAACATGCTGGGATTGGCTAAAAGAGTCGGTGCGAGGTTTTTGCTAACCAGCACTAGCGAAGTATATGGTGATCCTTTAGAACATCCACAGAAGGAGACATACTGGGGCAATGTTAATCCTATTGGTAAGATTTTTTAATTTCTTTTTCTATTTTCTATTTTAGTTATTTTCTTTTTAAAAAAATTCTTCAAAATCTCTTAATTTTAATTTTCACATTATATATTTTATTAAAATGCACGAATAAATTGAAACGAAAGAATTACGATGCACGTTAGCTATGGTCTTTTGATGGTTCATGGTAAAAATGTGGAGCCACGTGTTGAACGATGATGAGTGCTAATGACGTTTCTGTCCTTAGATCGGGTCGGGAAAATTATTTTAATTTAATTTTTTTTTGTCAACGATGATACCGTGATTTGCGGGTCCGGCCGCTTCATTCACCTATCTTTATGTCTTTCATTTTAATTCAATTGGCGCGCCCTTTTCTATTCAATCTTTTCTCTCTTTTATTTTGTCCTTGAAAAATTAAATTAGCTTAAGTAATTACTTTCTTGTCTTTTTCTTTTTTTCCTTTTATTTCCTTTTGAGTCTTTTGATATTTCACGTTTCGATTTGTTTGTTTAATTTTTTATTTTGTTTTAAAAAAAAGTTATGCCATGTTTAAGATAATAAAGATATAAAAATATTTTAGTATATTTCACTTCTTTCGTACGATAATAATAGTTGTTCACTATGTTATTTTGGAATGTTCAATAATATTTTTTCGTTTTATCAAATAATAGATAATTTTTGAATGACCTAGTTTGACTTGGAACGGAGTTTAAAAAAATAAAACAGACATTTTAAACTTGTGATTCTAAATTAAAGTTATGTCTAATGTACAAAAATGTCATTCATGCCACGTGGAAAGTTAAAGTGAAATTGTTGCCAAAAAAGCAAAGAGATTATTCTTTTGAATCAGACTAAAAAGGAAACAATGTTATTCTTTTTGAAACGGATGGAATATTTATTATATTCAAAGGGTGATACAGTAAAATTATTTTTTTATTTATATTTTCTATAGTAGACAAGTATTATTGTACATATTTTGATTTAAGATCATATAATTTAAAAAAATTGCTTTGTTTTGGTAGACTCGGTATTAGTCAAAATATGAAAAATAAATTGACAAAACGGAGGAAGTTACCATGACTATAATATTATCAATGTGATTCCACAAATGGAGTCTGTTGAACTCTTCCTTTACATGAAGGGAATGAATGCCTTAATGGAATGGAATCCGGGATCCAAGTAGATTAGGTTAAGGCAAGTATGAGTAGAGACTCTTTTCGATAACTTTGAAAAGCTTTATAACAACAACCAGTGAAAGAAATATAATAGTGAAACAAATTGTGTTTGTTTAACTACGAAGAAAGAGAAATAAATATAGTTGGACAGGTAGTAGTTGAATTATTATTGAATTTGTATAGAATATTAGATCTGAAATGTAACTTTAGTTTCCCGCAGACTAAGGAAGATGGTCTGTTTTGCCTTTTGTCTATTTTAATGTAAATGGTGGGGTTAACTGACCAAGAAAGTAAAACAGGTGTCCGAAGTTGCTACGATGAGGGAAAACGAACAGCTGAAACATTGACAATGGATTATCACAGAGGTGCAGAAGTTGAGGTTTGTGTTTTTTTTTTAACCCATAGTCCAGATTAATGTTTACTGTACTTGTTGATAATGTAGACTTCATAGATACTGTAATTGTAACTCCTCTAGTACTACATTCTCAAGAAATATAGGACATTTGTCACCTAACGGTGTGGCCTACTGGTCAATGAAGCAGGATGAGAACCATGAGTTCTCGAGTTTAAATTCCAAGAGATACAAAAACACAAGTGATATCTTACCATTTGTTCACTACGTGACACATGTTGTTGGTGTGAGGTGACAGGTTTCTTGTGTAATTAGTCGAGGTGCGAGGAAAAATAAAATTAACAATCACTCTGGAGCCAACTGTTTTATTCCTTATTGCGCATGTACTTGATCATCGATAAATGTACTTTGTATCTAGTGTTTTTAAATAATGTACTATCGGTGTAGTTTAATCTATGATAGCAAGTTAGCTACCGTTTTTATCAGGTTACTAATTACTGTTTATCATAGATATGTATCTGAAATTACCTGTTAAGTAATTTGCTGGTAAAATTGTGTCGATGTACCTATGTTGTTACAGGTGAGAATCGCTAGGATCTTTAACACTTATGGACCTCGTATGTGTATTGATGA</genome_strand>
        <mrna_strand>ACTATC.......................................................................................................AAGACTAATGTAGTTGGTACTTTGAACATGCTGGGATTGGCTAAAAGAGTCGGTGCGAGGTTTTTGCTAACCAGCACTAGCGAAGTATATGGTGATCCTTTAGAACATCCACAGAAGGAGACATACTGGGGCAATGTTAATCCTATTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCCGAAGATGCTACGATGAGGGAAAGCGAACAGCTGAAACATTGACAATGGATTATCACAGAGGTGCAGAAGTTGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAATCGCTAGGATCTTTAACACTTATGGACCTCGTATGTGTATTGATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E370251" ref_strand="+" ref_description="SGN-E370251 [TUS-28-K14]">
      <seq>tatcaagactaatgtagttggtactttgaacatgctgggattggctaaaagagtcggtgcgaggtttttgctaaccagcactagcgaagtatatggtgatcctttagaacatccacagaaggagacatactggggcaatgttaatcctattggtgtccgaagttgctacgatgagggaaaacgaacagctgaaacattgacaatggattatcacagaggtgcagaagttgaggtgagaatcgctaggatctttaacacttatggacctcgtatgtgtattgatgacggtcgcgttgtcagcaactttgtcgctcaggctttaaggaaagagcctttgacagtttatggtgatgggaaacaaacaagaagtttccaatttgtttcatatctggttgaaggcttaatgcggttgatggaaggagaacatgtcggacccttcaacctcggaaaccctggtgaattcacaatgcttgaacttgctaaggtggtccaggaaaccattgacccaaatgcacagattgtacacaaaccaaacacagaagatgacccacacaagcgaaaacctgatatcttaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="+" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="86752" stop="90822"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87051" g_stop="87202" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87203" i_stop="88663" i_length="1461">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88664" g_stop="88743" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="232" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88744" i_stop="89296" i_length="553">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89297" g_stop="89380" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="316" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89381" i_stop="89464" i_length="84">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89465" g_stop="89539" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="391" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89540" i_stop="90044" i_length="505">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90045" g_stop="90137" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="484" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="90138" i_stop="90430" i_length="293">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="90431" g_stop="90522" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="576" r_length="92" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="+" ref_id="SGN-E370251" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370251" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87051" e_stop="87202"/>
          <exon e_start="88664" e_stop="88743"/>
          <exon e_start="89297" e_stop="89380"/>
          <exon e_start="89465" e_stop="89539"/>
          <exon e_start="90045" e_stop="90137"/>
          <exon e_start="90431" e_stop="90522"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACAAGACTAATGTAGTTGGTACTTTGAACATGCTGGGATTGGCTAAAAGAGTCGGTGCGAGGTTTTTGCTAACCAGCACTAGCGAAGTATATGGTGATCCTTTAGAACATCCACAGAAGGAGACATACTGGGGCAATGTTAATCCTATTGGTAAGATTTTTTAATTTCTTTTTCTATTTTCTATTTTAGTTATTTTCTTTTTAAAAAAATTCTTCAAAATCTCTTAATTTTAATTTTCACATTATATATTTTATTAAAATGCACGAATAAATTGAAACGAAAGAATTACGATGCACGTTAGCTATGGTCTTTTGATGGTTCATGGTAAAAATGTGGAGCCACGTGTTGAACGATGATGAGTGCTAATGACGTTTCTGTCCTTAGATCGGGTCGGGAAAATTATTTTAATTTAATTTTTTTTTGTCAACGATGATACCGTGATTTGCGGGTCCGGCCGCTTCATTCACCTATCTTTATGTCTTTCATTTTAATTCAATTGGCGCGCCCTTTTCTATTCAATCTTTTCTCTCTTTTATTTTGTCCTTGAAAAATTAAATTAGCTTAAGTAATTACTTTCTTGTCTTTTTCTTTTTTTCCTTTTATTTCCTTTTGAGTCTTTTGATATTTCACGTTTCGATTTGTTTGTTTAATTTTTTATTTTGTTTTAAAAAAAAGTTATGCCATGTTTAAGATAATAAAGATATAAAAATATTTTAGTATATTTCACTTCTTTCGTACGATAATAATAGTTGTTCACTATGTTATTTTGGAATGTTCAATAATATTTTTTCGTTTTATCAAATAATAGATAATTTTTGAATGACCTAGTTTGACTTGGAACGGAGTTTAAAAAAATAAAACAGACATTTTAAACTTGTGATTCTAAATTAAAGTTATGTCTAATGTACAAAAATGTCATTCATGCCACGTGGAAAGTTAAAGTGAAATTGTTGCCAAAAAAGCAAAGAGATTATTCTTTTGAATCAGACTAAAAAGGAAACAATGTTATTCTTTTTGAAACGGATGGAATATTTATTATATTCAAAGGGTGATACAGTAAAATTATTTTTTTATTTATATTTTCTATAGTAGACAAGTATTATTGTACATATTTTGATTTAAGATCATATAATTTAAAAAAATTGCTTTGTTTTGGTAGACTCGGTATTAGTCAAAATATGAAAAATAAATTGACAAAACGGAGGAAGTTACCATGACTATAATATTATCAATGTGATTCCACAAATGGAGTCTGTTGAACTCTTCCTTTACATGAAGGGAATGAATGCCTTAATGGAATGGAATCCGGGATCCAAGTAGATTAGGTTAAGGCAAGTATGAGTAGAGACTCTTTTCGATAACTTTGAAAAGCTTTATAACAACAACCAGTGAAAGAAATATAATAGTGAAACAAATTGTGTTTGTTTAACTACGAAGAAAGAGAAATAAATATAGTTGGACAGGTAGTAGTTGAATTATTATTGAATTTGTATAGAATATTAGATCTGAAATGTAACTTTAGTTTCCCGCAGACTAAGGAAGATGGTCTGTTTTGCCTTTTGTCTATTTTAATGTAAATGGTGGGGTTAACTGACCAAGAAAGTAAAACAGGTGTCCGAAGTTGCTACGATGAGGGAAAACGAACAGCTGAAACATTGACAATGGATTATCACAGAGGTGCAGAAGTTGAGGTTTGTGTTTTTTTTTTAACCCATAGTCCAGATTAATGTTTACTGTACTTGTTGATAATGTAGACTTCATAGATACTGTAATTGTAACTCCTCTAGTACTACATTCTCAAGAAATATAGGACATTTGTCACCTAACGGTGTGGCCTACTGGTCAATGAAGCAGGATGAGAACCATGAGTTCTCGAGTTTAAATTCCAAGAGATACAAAAACACAAGTGATATCTTACCATTTGTTCACTACGTGACACATGTTGTTGGTGTGAGGTGACAGGTTTCTTGTGTAATTAGTCGAGGTGCGAGGAAAAATAAAATTAACAATCACTCTGGAGCCAACTGTTTTATTCCTTATTGCGCATGTACTTGATCATCGATAAATGTACTTTGTATCTAGTGTTTTTAAATAATGTACTATCGGTGTAGTTTAATCTATGATAGCAAGTTAGCTACCGTTTTTATCAGGTTACTAATTACTGTTTATCATAGATATGTATCTGAAATTACCTGTTAAGTAATTTGCTGGTAAAATTGTGTCGATGTACCTATGTTGTTACAGGTGAGAATCGCTAGGATCTTTAACACTTATGGACCTCGTATGTGTATTGATGACGGTCGCGTTGTCAGCAACTTTGTCGCTCAGGTGACTCCATTATTTAAATATAAACGTAAAGTTAATGGATTCTTAAACTAAGCAACAAAAAGCTTATATAAAATTTGTTTACAGGCTTTAAGGAAAGAGCCTTTGACAGTTTATGGTGATGGGAAACAAACAAGAAGTTTCCAATTTGTTTCAGATCTGGTACTTTTCTCTCTGTTCTTCGTTTTTTTTTTAGCTTTTTTAATACGTTACCTTATTAGTTTTATATGCATTCTTTCGAAGTGGCTTTCAAATGTAAGATTCTTTAATAATTTGACTTGCCATCTAGCTTACAGTTTACAACATGATTAGAAAATAAATAAATTAATATCTAAAGTAGGGTCCCCCTACTCTGTTGCAAGGTAAAATATTGTAGTGTGGAAGCACATGCCATGTCTAAGTAGAAGCCAGATACCTGGGACCCGTATTTTTATTTCTATGTACTCCTTCTGTCTCAATTTACGAGATGTAGTTTTGATTGGACACGGAGTTCAAGAAATATGTGTGAAGACTTTGCAATGTTCCGAAGTTATGCTTAAAAAGAGTGTACCTTTGTGGAACTTTTATCAAGCAGTAAAACAGTAATAAAAGTATAAAAACCATGGTTTGTGACCTTGATATAACATAAGAAGGAATCTAAACTTGCTTTATTTTGGTTAATGTGAAGGTTGAAGGCTTAATGCGGTTGATGGAAGGAGAACATGTCGGACCCTTCAACCTCGGAAACCCTGGTGAATTCACAATGCTTGAACTTGCTAAGGTATGTAACGACACACTTCTAAACATCCAACTTTGATGTTGTGTTTCTTTTGCATTAGCATTTTACATTGTCGTCAAGCTACAAAATCAGATTTCCGAGGAAAGGATAGAATGTACACCGATAAAATCAGTTTCATACGGCAATCATTTTCAGTCTTAAATCTAAGTTAGAAGTGTCTGAGCTTCATCATATGCACAGCTTCAGACATATGTCAAGTATTTCCAATGTGGGCTCTGTGATACTTTTACCATTTTGTTGACACATTGCCGTCTTTAATTGAATGCTGCACACAGGTGGTCCAGGAAACCATTGACCCAAATGCACAGATTGTACACAAACCAAACACAGAAGATGACCCACACAAGCGAAAACCTGATATCTCAAA</genome_strand>
        <mrna_strand>TATCAAGACTAATGTAGTTGGTACTTTGAACATGCTGGGATTGGCTAAAAGAGTCGGTGCGAGGTTTTTGCTAACCAGCACTAGCGAAGTATATGGTGATCCTTTAGAACATCCACAGAAGGAGACATACTGGGGCAATGTTAATCCTATTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCCGAAGTTGCTACGATGAGGGAAAACGAACAGCTGAAACATTGACAATGGATTATCACAGAGGTGCAGAAGTTGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAATCGCTAGGATCTTTAACACTTATGGACCTCGTATGTGTATTGATGACGGTCGCGTTGTCAGCAACTTTGTCGCTCAG....................................................................................GCTTTAAGGAAAGAGCCTTTGACAGTTTATGGTGATGGGAAACAAACAAGAAGTTTCCAATTTGTTTCATATCTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAGGCTTAATGCGGTTGATGGAAGGAGAACATGTCGGACCCTTCAACCTCGGAAACCCTGGTGAATTCACAATGCTTGAACTTGCTAAG.....................................................................................................................................................................................................................................................................................................GTGGTCCAGGAAACCATTGACCCAAATGCACAGATTGTACACAAACCAAACACAGAAGATGACCCACACAAGCGAAAACCTGATATCTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E271845" ref_strand="+" ref_description="SGN-E271845 [cLEM-8-D15]">
      <seq>tatcaagactaatgtagttggtactttgaacatgctgggattggctaaaagagtcggtgcgaggtttttgctaaccagcactagcgaagtatatggtgatcctttagaacatccacagaaggagacatactggggcaatgttaatcctattggtgtccgaagttgctacgatgagggaaaacgaacagctgaaacattgacaatggattatcacagaggtgcagaagttgaggtgagaatcgctaggatctttaacacttatggacctcgtatgtgtattgatgacggtcgcgttgtcagcaactttgtcgctcaggctttaaggaaagagcctttgacagtttatggtgatgggaaacaaacaagaagtttccaatttgtttcagatctggttgaaggcttaatgcggttgatggaaggagaacatgtcggacccttcaacctcggaaaccctggtgaattcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="+" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="86752" stop="90418"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87051" g_stop="87202" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87203" i_stop="88663" i_length="1461">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88664" g_stop="88743" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="232" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88744" i_stop="89296" i_length="553">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89297" g_stop="89380" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="316" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89381" i_stop="89464" i_length="84">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89465" g_stop="89539" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="391" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89540" i_stop="90044" i_length="505">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90045" g_stop="90118" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="465" r_length="74" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="+" ref_id="SGN-E271845" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87051" e_stop="87202"/>
          <exon e_start="88664" e_stop="88743"/>
          <exon e_start="89297" e_stop="89380"/>
          <exon e_start="89465" e_stop="89539"/>
          <exon e_start="90045" e_stop="90118"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACAAGACTAATGTAGTTGGTACTTTGAACATGCTGGGATTGGCTAAAAGAGTCGGTGCGAGGTTTTTGCTAACCAGCACTAGCGAAGTATATGGTGATCCTTTAGAACATCCACAGAAGGAGACATACTGGGGCAATGTTAATCCTATTGGTAAGATTTTTTAATTTCTTTTTCTATTTTCTATTTTAGTTATTTTCTTTTTAAAAAAATTCTTCAAAATCTCTTAATTTTAATTTTCACATTATATATTTTATTAAAATGCACGAATAAATTGAAACGAAAGAATTACGATGCACGTTAGCTATGGTCTTTTGATGGTTCATGGTAAAAATGTGGAGCCACGTGTTGAACGATGATGAGTGCTAATGACGTTTCTGTCCTTAGATCGGGTCGGGAAAATTATTTTAATTTAATTTTTTTTTGTCAACGATGATACCGTGATTTGCGGGTCCGGCCGCTTCATTCACCTATCTTTATGTCTTTCATTTTAATTCAATTGGCGCGCCCTTTTCTATTCAATCTTTTCTCTCTTTTATTTTGTCCTTGAAAAATTAAATTAGCTTAAGTAATTACTTTCTTGTCTTTTTCTTTTTTTCCTTTTATTTCCTTTTGAGTCTTTTGATATTTCACGTTTCGATTTGTTTGTTTAATTTTTTATTTTGTTTTAAAAAAAAGTTATGCCATGTTTAAGATAATAAAGATATAAAAATATTTTAGTATATTTCACTTCTTTCGTACGATAATAATAGTTGTTCACTATGTTATTTTGGAATGTTCAATAATATTTTTTCGTTTTATCAAATAATAGATAATTTTTGAATGACCTAGTTTGACTTGGAACGGAGTTTAAAAAAATAAAACAGACATTTTAAACTTGTGATTCTAAATTAAAGTTATGTCTAATGTACAAAAATGTCATTCATGCCACGTGGAAAGTTAAAGTGAAATTGTTGCCAAAAAAGCAAAGAGATTATTCTTTTGAATCAGACTAAAAAGGAAACAATGTTATTCTTTTTGAAACGGATGGAATATTTATTATATTCAAAGGGTGATACAGTAAAATTATTTTTTTATTTATATTTTCTATAGTAGACAAGTATTATTGTACATATTTTGATTTAAGATCATATAATTTAAAAAAATTGCTTTGTTTTGGTAGACTCGGTATTAGTCAAAATATGAAAAATAAATTGACAAAACGGAGGAAGTTACCATGACTATAATATTATCAATGTGATTCCACAAATGGAGTCTGTTGAACTCTTCCTTTACATGAAGGGAATGAATGCCTTAATGGAATGGAATCCGGGATCCAAGTAGATTAGGTTAAGGCAAGTATGAGTAGAGACTCTTTTCGATAACTTTGAAAAGCTTTATAACAACAACCAGTGAAAGAAATATAATAGTGAAACAAATTGTGTTTGTTTAACTACGAAGAAAGAGAAATAAATATAGTTGGACAGGTAGTAGTTGAATTATTATTGAATTTGTATAGAATATTAGATCTGAAATGTAACTTTAGTTTCCCGCAGACTAAGGAAGATGGTCTGTTTTGCCTTTTGTCTATTTTAATGTAAATGGTGGGGTTAACTGACCAAGAAAGTAAAACAGGTGTCCGAAGTTGCTACGATGAGGGAAAACGAACAGCTGAAACATTGACAATGGATTATCACAGAGGTGCAGAAGTTGAGGTTTGTGTTTTTTTTTTAACCCATAGTCCAGATTAATGTTTACTGTACTTGTTGATAATGTAGACTTCATAGATACTGTAATTGTAACTCCTCTAGTACTACATTCTCAAGAAATATAGGACATTTGTCACCTAACGGTGTGGCCTACTGGTCAATGAAGCAGGATGAGAACCATGAGTTCTCGAGTTTAAATTCCAAGAGATACAAAAACACAAGTGATATCTTACCATTTGTTCACTACGTGACACATGTTGTTGGTGTGAGGTGACAGGTTTCTTGTGTAATTAGTCGAGGTGCGAGGAAAAATAAAATTAACAATCACTCTGGAGCCAACTGTTTTATTCCTTATTGCGCATGTACTTGATCATCGATAAATGTACTTTGTATCTAGTGTTTTTAAATAATGTACTATCGGTGTAGTTTAATCTATGATAGCAAGTTAGCTACCGTTTTTATCAGGTTACTAATTACTGTTTATCATAGATATGTATCTGAAATTACCTGTTAAGTAATTTGCTGGTAAAATTGTGTCGATGTACCTATGTTGTTACAGGTGAGAATCGCTAGGATCTTTAACACTTATGGACCTCGTATGTGTATTGATGACGGTCGCGTTGTCAGCAACTTTGTCGCTCAGGTGACTCCATTATTTAAATATAAACGTAAAGTTAATGGATTCTTAAACTAAGCAACAAAAAGCTTATATAAAATTTGTTTACAGGCTTTAAGGAAAGAGCCTTTGACAGTTTATGGTGATGGGAAACAAACAAGAAGTTTCCAATTTGTTTCAGATCTGGTACTTTTCTCTCTGTTCTTCGTTTTTTTTTTAGCTTTTTTAATACGTTACCTTATTAGTTTTATATGCATTCTTTCGAAGTGGCTTTCAAATGTAAGATTCTTTAATAATTTGACTTGCCATCTAGCTTACAGTTTACAACATGATTAGAAAATAAATAAATTAATATCTAAAGTAGGGTCCCCCTACTCTGTTGCAAGGTAAAATATTGTAGTGTGGAAGCACATGCCATGTCTAAGTAGAAGCCAGATACCTGGGACCCGTATTTTTATTTCTATGTACTCCTTCTGTCTCAATTTACGAGATGTAGTTTTGATTGGACACGGAGTTCAAGAAATATGTGTGAAGACTTTGCAATGTTCCGAAGTTATGCTTAAAAAGAGTGTACCTTTGTGGAACTTTTATCAAGCAGTAAAACAGTAATAAAAGTATAAAAACCATGGTTTGTGACCTTGATATAACATAAGAAGGAATCTAAACTTGCTTTATTTTGGTTAATGTGAAGGTTGAAGGCTTAATGCGGTTGATGGAAGGAGAACATGTCGGACCCTTCAACCTCGGAAACCCTGGTGAATTCAC</genome_strand>
        <mrna_strand>TATCAAGACTAATGTAGTTGGTACTTTGAACATGCTGGGATTGGCTAAAAGAGTCGGTGCGAGGTTTTTGCTAACCAGCACTAGCGAAGTATATGGTGATCCTTTAGAACATCCACAGAAGGAGACATACTGGGGCAATGTTAATCCTATTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCCGAAGTTGCTACGATGAGGGAAAACGAACAGCTGAAACATTGACAATGGATTATCACAGAGGTGCAGAAGTTGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAATCGCTAGGATCTTTAACACTTATGGACCTCGTATGTGTATTGATGACGGTCGCGTTGTCAGCAACTTTGTCGCTCAG....................................................................................GCTTTAAGGAAAGAGCCTTTGACAGTTTATGGTGATGGGAAACAAACAAGAAGTTTCCAATTTGTTTCAGATCTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAGGCTTAATGCGGTTGATGGAAGGAGAACATGTCGGACCCTTCAACCTCGGAAACCCTGGTGAATTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E478012" ref_strand="+" ref_description="SGN-E478012 [cSTD-2-P13]">
      <seq>agaacatccacagaaggagacatactggggcaatgttaatcctattggtgtccgaagttgctacgatgagggaaaacgtacagctgaaacattgaccatggattatcacagaggtgctgaagttgaggtgagaattgctaggatctttaacacttatggacctcgtatgtgcattgatgatggtcgcgttgtcagcaactttgtcgctcaggctttaaggaaggagcctttgacagtttatggtgatgggaaacaaacaagaagtttccaatttgtttcagatctggttgaaggcctaatgcggttgatggaaggagaacatgtcggacccttcaacctcggaaaccctggtgaattcacaatgcttgaacttgctaaggtggtccaggaaaccattgacccaaatgcacagattgtacacaaaccaaacacagaagatgacccacacaagaggaaacctgatatctcaaaggctaaagagttacttggttgggaaccaaaagtggctcttagaaatggtctacctatgatggttcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="+" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="86856" stop="90890"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87156" g_stop="87202" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87203" i_stop="88663" i_length="1461">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88664" g_stop="88743" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="127" r_length="80" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88744" i_stop="89296" i_length="553">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89297" g_stop="89380" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="211" r_length="84" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89381" i_stop="89464" i_length="84">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89465" g_stop="89539" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="286" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89540" i_stop="90044" i_length="505">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90045" g_stop="90137" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="379" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="90138" i_stop="90430" i_length="293">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="90431" g_stop="90590" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="539" r_length="160" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="+" ref_id="SGN-E478012" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E478012" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87156" e_stop="87202"/>
          <exon e_start="88664" e_stop="88743"/>
          <exon e_start="89297" e_stop="89380"/>
          <exon e_start="89465" e_stop="89539"/>
          <exon e_start="90045" e_stop="90137"/>
          <exon e_start="90431" e_stop="90590"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAACATCCACAGAAGGAGACATACTGGGGCAATGTTAATCCTATTGGTAAGATTTTTTAATTTCTTTTTCTATTTTCTATTTTAGTTATTTTCTTTTTAAAAAAATTCTTCAAAATCTCTTAATTTTAATTTTCACATTATATATTTTATTAAAATGCACGAATAAATTGAAACGAAAGAATTACGATGCACGTTAGCTATGGTCTTTTGATGGTTCATGGTAAAAATGTGGAGCCACGTGTTGAACGATGATGAGTGCTAATGACGTTTCTGTCCTTAGATCGGGTCGGGAAAATTATTTTAATTTAATTTTTTTTTGTCAACGATGATACCGTGATTTGCGGGTCCGGCCGCTTCATTCACCTATCTTTATGTCTTTCATTTTAATTCAATTGGCGCGCCCTTTTCTATTCAATCTTTTCTCTCTTTTATTTTGTCCTTGAAAAATTAAATTAGCTTAAGTAATTACTTTCTTGTCTTTTTCTTTTTTTCCTTTTATTTCCTTTTGAGTCTTTTGATATTTCACGTTTCGATTTGTTTGTTTAATTTTTTATTTTGTTTTAAAAAAAAGTTATGCCATGTTTAAGATAATAAAGATATAAAAATATTTTAGTATATTTCACTTCTTTCGTACGATAATAATAGTTGTTCACTATGTTATTTTGGAATGTTCAATAATATTTTTTCGTTTTATCAAATAATAGATAATTTTTGAATGACCTAGTTTGACTTGGAACGGAGTTTAAAAAAATAAAACAGACATTTTAAACTTGTGATTCTAAATTAAAGTTATGTCTAATGTACAAAAATGTCATTCATGCCACGTGGAAAGTTAAAGTGAAATTGTTGCCAAAAAAGCAAAGAGATTATTCTTTTGAATCAGACTAAAAAGGAAACAATGTTATTCTTTTTGAAACGGATGGAATATTTATTATATTCAAAGGGTGATACAGTAAAATTATTTTTTTATTTATATTTTCTATAGTAGACAAGTATTATTGTACATATTTTGATTTAAGATCATATAATTTAAAAAAATTGCTTTGTTTTGGTAGACTCGGTATTAGTCAAAATATGAAAAATAAATTGACAAAACGGAGGAAGTTACCATGACTATAATATTATCAATGTGATTCCACAAATGGAGTCTGTTGAACTCTTCCTTTACATGAAGGGAATGAATGCCTTAATGGAATGGAATCCGGGATCCAAGTAGATTAGGTTAAGGCAAGTATGAGTAGAGACTCTTTTCGATAACTTTGAAAAGCTTTATAACAACAACCAGTGAAAGAAATATAATAGTGAAACAAATTGTGTTTGTTTAACTACGAAGAAAGAGAAATAAATATAGTTGGACAGGTAGTAGTTGAATTATTATTGAATTTGTATAGAATATTAGATCTGAAATGTAACTTTAGTTTCCCGCAGACTAAGGAAGATGGTCTGTTTTGCCTTTTGTCTATTTTAATGTAAATGGTGGGGTTAACTGACCAAGAAAGTAAAACAGGTGTCCGAAGTTGCTACGATGAGGGAAAACGAACAGCTGAAACATTGACAATGGATTATCACAGAGGTGCAGAAGTTGAGGTTTGTGTTTTTTTTTTAACCCATAGTCCAGATTAATGTTTACTGTACTTGTTGATAATGTAGACTTCATAGATACTGTAATTGTAACTCCTCTAGTACTACATTCTCAAGAAATATAGGACATTTGTCACCTAACGGTGTGGCCTACTGGTCAATGAAGCAGGATGAGAACCATGAGTTCTCGAGTTTAAATTCCAAGAGATACAAAAACACAAGTGATATCTTACCATTTGTTCACTACGTGACACATGTTGTTGGTGTGAGGTGACAGGTTTCTTGTGTAATTAGTCGAGGTGCGAGGAAAAATAAAATTAACAATCACTCTGGAGCCAACTGTTTTATTCCTTATTGCGCATGTACTTGATCATCGATAAATGTACTTTGTATCTAGTGTTTTTAAATAATGTACTATCGGTGTAGTTTAATCTATGATAGCAAGTTAGCTACCGTTTTTATCAGGTTACTAATTACTGTTTATCATAGATATGTATCTGAAATTACCTGTTAAGTAATTTGCTGGTAAAATTGTGTCGATGTACCTATGTTGTTACAGGTGAGAATCGCTAGGATCTTTAACACTTATGGACCTCGTATGTGTATTGATGACGGTCGCGTTGTCAGCAACTTTGTCGCTCAGGTGACTCCATTATTTAAATATAAACGTAAAGTTAATGGATTCTTAAACTAAGCAACAAAAAGCTTATATAAAATTTGTTTACAGGCTTTAAGGAAAGAGCCTTTGACAGTTTATGGTGATGGGAAACAAACAAGAAGTTTCCAATTTGTTTCAGATCTGGTACTTTTCTCTCTGTTCTTCGTTTTTTTTTTAGCTTTTTTAATACGTTACCTTATTAGTTTTATATGCATTCTTTCGAAGTGGCTTTCAAATGTAAGATTCTTTAATAATTTGACTTGCCATCTAGCTTACAGTTTACAACATGATTAGAAAATAAATAAATTAATATCTAAAGTAGGGTCCCCCTACTCTGTTGCAAGGTAAAATATTGTAGTGTGGAAGCACATGCCATGTCTAAGTAGAAGCCAGATACCTGGGACCCGTATTTTTATTTCTATGTACTCCTTCTGTCTCAATTTACGAGATGTAGTTTTGATTGGACACGGAGTTCAAGAAATATGTGTGAAGACTTTGCAATGTTCCGAAGTTATGCTTAAAAAGAGTGTACCTTTGTGGAACTTTTATCAAGCAGTAAAACAGTAATAAAAGTATAAAAACCATGGTTTGTGACCTTGATATAACATAAGAAGGAATCTAAACTTGCTTTATTTTGGTTAATGTGAAGGTTGAAGGCTTAATGCGGTTGATGGAAGGAGAACATGTCGGACCCTTCAACCTCGGAAACCCTGGTGAATTCACAATGCTTGAACTTGCTAAGGTATGTAACGACACACTTCTAAACATCCAACTTTGATGTTGTGTTTCTTTTGCATTAGCATTTTACATTGTCGTCAAGCTACAAAATCAGATTTCCGAGGAAAGGATAGAATGTACACCGATAAAATCAGTTTCATACGGCAATCATTTTCAGTCTTAAATCTAAGTTAGAAGTGTCTGAGCTTCATCATATGCACAGCTTCAGACATATGTCAAGTATTTCCAATGTGGGCTCTGTGATACTTTTACCATTTTGTTGACACATTGCCGTCTTTAATTGAATGCTGCACACAGGTGGTCCAGGAAACCATTGACCCAAATGCACAGATTGTACACAAACCAAACACAGAAGATGACCCACACAAGCGAAAACCTGATATCTCAAAGGCTAAAGAGTTACTTGGTTGGGAACCGAAAGTGGCTCTTAGAAATGGTTTGCCTATGATGGTTCAAG</genome_strand>
        <mrna_strand>AGAACATCCACAGAAGGAGACATACTGGGGCAATGTTAATCCTATTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCCGAAGTTGCTACGATGAGGGAAAACGTACAGCTGAAACATTGACCATGGATTATCACAGAGGTGCTGAAGTTGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAATTGCTAGGATCTTTAACACTTATGGACCTCGTATGTGCATTGATGATGGTCGCGTTGTCAGCAACTTTGTCGCTCAG....................................................................................GCTTTAAGGAAGGAGCCTTTGACAGTTTATGGTGATGGGAAACAAACAAGAAGTTTCCAATTTGTTTCAGATCTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAGGCCTAATGCGGTTGATGGAAGGAGAACATGTCGGACCCTTCAACCTCGGAAACCCTGGTGAATTCACAATGCTTGAACTTGCTAAG.....................................................................................................................................................................................................................................................................................................GTGGTCCAGGAAACCATTGACCCAAATGCACAGATTGTACACAAACCAAACACAGAAGATGACCCACACAAGAGGAAACCTGATATCTCAAAGGCTAAAGAGTTACTTGGTTGGGAACCAAAAGTGGCTCTTAGAAATGGTCTACCTATGATGGTTCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E200754" ref_strand="+" ref_description="SGN-E200754 [cLEC-9-A10]">
      <seq>gaacatccacagaaggagacatactggggcaatgttaatcctattggtgtccgaagttgctacgatgagggaaaacgaacagctgaaacattgacaatggattatcacagaggtgcagaagttgaggtgagaatcgctaggatctttaacacttatggacctcgtatgtgtattgatgacggtcgcgttgtcagcaactttgtcgctcaggctttaaggaaagagcctttgacagtttatggtgatgggaaacaaacaagaagtttccaatttgtttcagatctggttgaaggcttaatgcggttgatggaaggagaacatgtcgggacccttcaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="+" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="86857" stop="90396"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87157" g_stop="87202" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87203" i_stop="88663" i_length="1461">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88664" g_stop="88743" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="126" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88744" i_stop="89296" i_length="553">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89297" g_stop="89380" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="210" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89381" i_stop="89464" i_length="84">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89465" g_stop="89539" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="285" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89540" i_stop="90044" i_length="505">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90045" g_stop="90096" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="338" r_length="53" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="+" ref_id="SGN-E200754" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>337</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200754" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87157" e_stop="87202"/>
          <exon e_start="88664" e_stop="88743"/>
          <exon e_start="89297" e_stop="89380"/>
          <exon e_start="89465" e_stop="89539"/>
          <exon e_start="90045" e_stop="90096"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACATCCACAGAAGGAGACATACTGGGGCAATGTTAATCCTATTGGTAAGATTTTTTAATTTCTTTTTCTATTTTCTATTTTAGTTATTTTCTTTTTAAAAAAATTCTTCAAAATCTCTTAATTTTAATTTTCACATTATATATTTTATTAAAATGCACGAATAAATTGAAACGAAAGAATTACGATGCACGTTAGCTATGGTCTTTTGATGGTTCATGGTAAAAATGTGGAGCCACGTGTTGAACGATGATGAGTGCTAATGACGTTTCTGTCCTTAGATCGGGTCGGGAAAATTATTTTAATTTAATTTTTTTTTGTCAACGATGATACCGTGATTTGCGGGTCCGGCCGCTTCATTCACCTATCTTTATGTCTTTCATTTTAATTCAATTGGCGCGCCCTTTTCTATTCAATCTTTTCTCTCTTTTATTTTGTCCTTGAAAAATTAAATTAGCTTAAGTAATTACTTTCTTGTCTTTTTCTTTTTTTCCTTTTATTTCCTTTTGAGTCTTTTGATATTTCACGTTTCGATTTGTTTGTTTAATTTTTTATTTTGTTTTAAAAAAAAGTTATGCCATGTTTAAGATAATAAAGATATAAAAATATTTTAGTATATTTCACTTCTTTCGTACGATAATAATAGTTGTTCACTATGTTATTTTGGAATGTTCAATAATATTTTTTCGTTTTATCAAATAATAGATAATTTTTGAATGACCTAGTTTGACTTGGAACGGAGTTTAAAAAAATAAAACAGACATTTTAAACTTGTGATTCTAAATTAAAGTTATGTCTAATGTACAAAAATGTCATTCATGCCACGTGGAAAGTTAAAGTGAAATTGTTGCCAAAAAAGCAAAGAGATTATTCTTTTGAATCAGACTAAAAAGGAAACAATGTTATTCTTTTTGAAACGGATGGAATATTTATTATATTCAAAGGGTGATACAGTAAAATTATTTTTTTATTTATATTTTCTATAGTAGACAAGTATTATTGTACATATTTTGATTTAAGATCATATAATTTAAAAAAATTGCTTTGTTTTGGTAGACTCGGTATTAGTCAAAATATGAAAAATAAATTGACAAAACGGAGGAAGTTACCATGACTATAATATTATCAATGTGATTCCACAAATGGAGTCTGTTGAACTCTTCCTTTACATGAAGGGAATGAATGCCTTAATGGAATGGAATCCGGGATCCAAGTAGATTAGGTTAAGGCAAGTATGAGTAGAGACTCTTTTCGATAACTTTGAAAAGCTTTATAACAACAACCAGTGAAAGAAATATAATAGTGAAACAAATTGTGTTTGTTTAACTACGAAGAAAGAGAAATAAATATAGTTGGACAGGTAGTAGTTGAATTATTATTGAATTTGTATAGAATATTAGATCTGAAATGTAACTTTAGTTTCCCGCAGACTAAGGAAGATGGTCTGTTTTGCCTTTTGTCTATTTTAATGTAAATGGTGGGGTTAACTGACCAAGAAAGTAAAACAGGTGTCCGAAGTTGCTACGATGAGGGAAAACGAACAGCTGAAACATTGACAATGGATTATCACAGAGGTGCAGAAGTTGAGGTTTGTGTTTTTTTTTTAACCCATAGTCCAGATTAATGTTTACTGTACTTGTTGATAATGTAGACTTCATAGATACTGTAATTGTAACTCCTCTAGTACTACATTCTCAAGAAATATAGGACATTTGTCACCTAACGGTGTGGCCTACTGGTCAATGAAGCAGGATGAGAACCATGAGTTCTCGAGTTTAAATTCCAAGAGATACAAAAACACAAGTGATATCTTACCATTTGTTCACTACGTGACACATGTTGTTGGTGTGAGGTGACAGGTTTCTTGTGTAATTAGTCGAGGTGCGAGGAAAAATAAAATTAACAATCACTCTGGAGCCAACTGTTTTATTCCTTATTGCGCATGTACTTGATCATCGATAAATGTACTTTGTATCTAGTGTTTTTAAATAATGTACTATCGGTGTAGTTTAATCTATGATAGCAAGTTAGCTACCGTTTTTATCAGGTTACTAATTACTGTTTATCATAGATATGTATCTGAAATTACCTGTTAAGTAATTTGCTGGTAAAATTGTGTCGATGTACCTATGTTGTTACAGGTGAGAATCGCTAGGATCTTTAACACTTATGGACCTCGTATGTGTATTGATGACGGTCGCGTTGTCAGCAACTTTGTCGCTCAGGTGACTCCATTATTTAAATATAAACGTAAAGTTAATGGATTCTTAAACTAAGCAACAAAAAGCTTATATAAAATTTGTTTACAGGCTTTAAGGAAAGAGCCTTTGACAGTTTATGGTGATGGGAAACAAACAAGAAGTTTCCAATTTGTTTCAGATCTGGTACTTTTCTCTCTGTTCTTCGTTTTTTTTTTAGCTTTTTTAATACGTTACCTTATTAGTTTTATATGCATTCTTTCGAAGTGGCTTTCAAATGTAAGATTCTTTAATAATTTGACTTGCCATCTAGCTTACAGTTTACAACATGATTAGAAAATAAATAAATTAATATCTAAAGTAGGGTCCCCCTACTCTGTTGCAAGGTAAAATATTGTAGTGTGGAAGCACATGCCATGTCTAAGTAGAAGCCAGATACCTGGGACCCGTATTTTTATTTCTATGTACTCCTTCTGTCTCAATTTACGAGATGTAGTTTTGATTGGACACGGAGTTCAAGAAATATGTGTGAAGACTTTGCAATGTTCCGAAGTTATGCTTAAAAAGAGTGTACCTTTGTGGAACTTTTATCAAGCAGTAAAACAGTAATAAAAGTATAAAAACCATGGTTTGTGACCTTGATATAACATAAGAAGGAATCTAAACTTGCTTTATTTTGGTTAATGTGAAGGTTGAAGGCTTAATGCGGTTGATGGAAGGAGAACATGTC-GGACCCTTCAACC</genome_strand>
        <mrna_strand>GAACATCCACAGAAGGAGACATACTGGGGCAATGTTAATCCTATTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCCGAAGTTGCTACGATGAGGGAAAACGAACAGCTGAAACATTGACAATGGATTATCACAGAGGTGCAGAAGTTGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAATCGCTAGGATCTTTAACACTTATGGACCTCGTATGTGTATTGATGACGGTCGCGTTGTCAGCAACTTTGTCGCTCAG....................................................................................GCTTTAAGGAAAGAGCCTTTGACAGTTTATGGTGATGGGAAACAAACAAGAAGTTTCCAATTTGTTTCAGATCTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAGGCTTAATGCGGTTGATGGAAGGAGAACATGTCGGGACCCTTCAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E241935" ref_strand="+" ref_description="SGN-E241935 [cLED-27-N20]">
      <seq>tatgtgtattgatgacggtctcgttgtttgcaactttgtcgctcaggctttaaggaaagagcctttgaccgtttatggtgatgggaaacaaacaagaagtttccaatttgtttcagatctggttgaaggcttaatgcggttgatggaaggagaacatgtcggacccttcaacctcggaaaccctggtgaattcacaatgcttgaacttgctaaggtggtccaggaaaccattgacccaaatgcacagattgtacacaaaccaaacacagaagatgacccacacaagcgaaaacctgatatctcaaaggctaaagagttacttggttgggaaccgaaagtggctcttagaaatggtttgcctatgatggttcaagacttcaggcaacgtattttcggtgatcacaaagaagaaagtgcaaagatcaccacagcttaatagaaaagaaaagtgtgttatgtttggatatttgttaaacttggtaaggggtgaaacgcacgcgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="+" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="89035" stop="91019"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89335" g_stop="89380" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89381" i_stop="89464" i_length="84">
            <donor d_prob="0.994" d_score="0.93"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89465" g_stop="89539" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="121" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89540" i_stop="90044" i_length="505">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90045" g_stop="90137" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="214" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90138" i_stop="90430" i_length="293">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90431" g_stop="90719" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="503" r_length="289" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="+" ref_id="SGN-E241935" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241935" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89335" e_stop="89380"/>
          <exon e_start="89465" e_stop="89539"/>
          <exon e_start="90045" e_stop="90137"/>
          <exon e_start="90431" e_stop="90719"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGTGTATTGATGACGGTCGCGTTGTCAGCAACTTTGTCGCTCAGGTGACTCCATTATTTAAATATAAACGTAAAGTTAATGGATTCTTAAACTAAGCAACAAAAAGCTTATATAAAATTTGTTTACAGGCTTTAAGGAAAGAGCCTTTGACAGTTTATGGTGATGGGAAACAAACAAGAAGTTTCCAATTTGTTTCAGATCTGGTACTTTTCTCTCTGTTCTTCGTTTTTTTTTTAGCTTTTTTAATACGTTACCTTATTAGTTTTATATGCATTCTTTCGAAGTGGCTTTCAAATGTAAGATTCTTTAATAATTTGACTTGCCATCTAGCTTACAGTTTACAACATGATTAGAAAATAAATAAATTAATATCTAAAGTAGGGTCCCCCTACTCTGTTGCAAGGTAAAATATTGTAGTGTGGAAGCACATGCCATGTCTAAGTAGAAGCCAGATACCTGGGACCCGTATTTTTATTTCTATGTACTCCTTCTGTCTCAATTTACGAGATGTAGTTTTGATTGGACACGGAGTTCAAGAAATATGTGTGAAGACTTTGCAATGTTCCGAAGTTATGCTTAAAAAGAGTGTACCTTTGTGGAACTTTTATCAAGCAGTAAAACAGTAATAAAAGTATAAAAACCATGGTTTGTGACCTTGATATAACATAAGAAGGAATCTAAACTTGCTTTATTTTGGTTAATGTGAAGGTTGAAGGCTTAATGCGGTTGATGGAAGGAGAACATGTCGGACCCTTCAACCTCGGAAACCCTGGTGAATTCACAATGCTTGAACTTGCTAAGGTATGTAACGACACACTTCTAAACATCCAACTTTGATGTTGTGTTTCTTTTGCATTAGCATTTTACATTGTCGTCAAGCTACAAAATCAGATTTCCGAGGAAAGGATAGAATGTACACCGATAAAATCAGTTTCATACGGCAATCATTTTCAGTCTTAAATCTAAGTTAGAAGTGTCTGAGCTTCATCATATGCACAGCTTCAGACATATGTCAAGTATTTCCAATGTGGGCTCTGTGATACTTTTACCATTTTGTTGACACATTGCCGTCTTTAATTGAATGCTGCACACAGGTGGTCCAGGAAACCATTGACCCAAATGCACAGATTGTACACAAACCAAACACAGAAGATGACCCACACAAGCGAAAACCTGATATCTCAAAGGCTAAAGAGTTACTTGGTTGGGAACCGAAAGTGGCTCTTAGAAATGGTTTGCCTATGATGGTTCAAGACTTCAGGCAACGTATTTTCGGTGATCACAAAGAAGAAAGTGCAAAGATCACCACAGCTTAATAGAAAAGAAAAGTGTGTTATGTTTGGATATTTGTTAAACTTGGTAAGGGGTGAAACGCACGCGAAG</genome_strand>
        <mrna_strand>TATGTGTATTGATGACGGTCTCGTTGTTTGCAACTTTGTCGCTCAG....................................................................................GCTTTAAGGAAAGAGCCTTTGACCGTTTATGGTGATGGGAAACAAACAAGAAGTTTCCAATTTGTTTCAGATCTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAGGCTTAATGCGGTTGATGGAAGGAGAACATGTCGGACCCTTCAACCTCGGAAACCCTGGTGAATTCACAATGCTTGAACTTGCTAAG.....................................................................................................................................................................................................................................................................................................GTGGTCCAGGAAACCATTGACCCAAATGCACAGATTGTACACAAACCAAACACAGAAGATGACCCACACAAGCGAAAACCTGATATCTCAAAGGCTAAAGAGTTACTTGGTTGGGAACCGAAAGTGGCTCTTAGAAATGGTTTGCCTATGATGGTTCAAGACTTCAGGCAACGTATTTTCGGTGATCACAAAGAAGAAAGTGCAAAGATCACCACAGCTTAATAGAAAAGAAAAGTGTGTTATGTTTGGATATTTGTTAAACTTGGTAAGGGGTGAAACGCACGCGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E354807" ref_strand="+" ref_description="SGN-E354807 [cTOS-19-I12]">
      <seq>ggaaacaaacaagaagtttccaatttgtttcagatctggttgaaggcttaatgcggttgatggaaggagaacatgtcggacccttcaacctcggaaaccctggtgaattcacaatgcttgaacttgctaaggtggtccaggaaaccattgacccaaatgcacagattgtacacaaaccaaacacagaagatgacccacacaagcgaaaacctgatatctcaaaggctaaagagttacttggttgggaaccgaaagtggctcttagaaatggtttgcctatgatggttcaagacttcaggcaacgtattttcggtgatcacaaagaagaaagtgcaaagatcaccacagcttaatagaaaagaaaagtgtgttatgtttggatatttgttaaacttggtaaggggtgaaacgcacgcgaagaaaagacgactctcttgtgttgatgttagtttcaagcagaagtgcaggcagcagaagactgagctgagctccccatgtacttcttttgaatagttggttctttgtcaattttgcaattctattattagtattattatccttttgttaacagttgatgtagtagaccaactttcattattctcataagaataaaactggtacgtattttccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="+" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="89202" stop="91230"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89502" g_stop="89539" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89540" i_stop="90044" i_length="505">
            <donor d_prob="0.987" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90045" g_stop="90137" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="131" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90138" i_stop="90430" i_length="293">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90431" g_stop="90930" g_length="500"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="631" r_length="500" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="+" ref_id="SGN-E354807" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354807" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89502" e_stop="89539"/>
          <exon e_start="90045" e_stop="90137"/>
          <exon e_start="90431" e_stop="90930"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAACAAACAAGAAGTTTCCAATTTGTTTCAGATCTGGTACTTTTCTCTCTGTTCTTCGTTTTTTTTTTAGCTTTTTTAATACGTTACCTTATTAGTTTTATATGCATTCTTTCGAAGTGGCTTTCAAATGTAAGATTCTTTAATAATTTGACTTGCCATCTAGCTTACAGTTTACAACATGATTAGAAAATAAATAAATTAATATCTAAAGTAGGGTCCCCCTACTCTGTTGCAAGGTAAAATATTGTAGTGTGGAAGCACATGCCATGTCTAAGTAGAAGCCAGATACCTGGGACCCGTATTTTTATTTCTATGTACTCCTTCTGTCTCAATTTACGAGATGTAGTTTTGATTGGACACGGAGTTCAAGAAATATGTGTGAAGACTTTGCAATGTTCCGAAGTTATGCTTAAAAAGAGTGTACCTTTGTGGAACTTTTATCAAGCAGTAAAACAGTAATAAAAGTATAAAAACCATGGTTTGTGACCTTGATATAACATAAGAAGGAATCTAAACTTGCTTTATTTTGGTTAATGTGAAGGTTGAAGGCTTAATGCGGTTGATGGAAGGAGAACATGTCGGACCCTTCAACCTCGGAAACCCTGGTGAATTCACAATGCTTGAACTTGCTAAGGTATGTAACGACACACTTCTAAACATCCAACTTTGATGTTGTGTTTCTTTTGCATTAGCATTTTACATTGTCGTCAAGCTACAAAATCAGATTTCCGAGGAAAGGATAGAATGTACACCGATAAAATCAGTTTCATACGGCAATCATTTTCAGTCTTAAATCTAAGTTAGAAGTGTCTGAGCTTCATCATATGCACAGCTTCAGACATATGTCAAGTATTTCCAATGTGGGCTCTGTGATACTTTTACCATTTTGTTGACACATTGCCGTCTTTAATTGAATGCTGCACACAGGTGGTCCAGGAAACCATTGACCCAAATGCACAGATTGTACACAAACCAAACACAGAAGATGACCCACACAAGCGAAAACCTGATATCTCAAAGGCTAAAGAGTTACTTGGTTGGGAACCGAAAGTGGCTCTTAGAAATGGTTTGCCTATGATGGTTCAAGACTTCAGGCAACGTATTTTCGGTGATCACAAAGAAGAAAGTGCAAAGATCACCACAGCTTAATAGAAAAGAAAAGTGTGTTATGTTTGGATATTTGTTAAACTTGGTAAGGGGTGAAACGCACGCGAAGAAAAGACGACTCTCTTGTGTTGATGTTAGTTTCAAGCAGAAGTGCAGGCAGCAGAAGACTGAGCTGAGCTCCCCATGTACTTCTTTTGAATAGTTGGTTCTTTGTCAATTTTGCAATTCTATTATTAGTATTATTATCCTTTTGTTAACAGTTGATGTAGTAGACCAACTTTCATTATTCTCATAAGAATAAAACTGGTACGTATTTTCCC</genome_strand>
        <mrna_strand>GGAAACAAACAAGAAGTTTCCAATTTGTTTCAGATCTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAGGCTTAATGCGGTTGATGGAAGGAGAACATGTCGGACCCTTCAACCTCGGAAACCCTGGTGAATTCACAATGCTTGAACTTGCTAAG.....................................................................................................................................................................................................................................................................................................GTGGTCCAGGAAACCATTGACCCAAATGCACAGATTGTACACAAACCAAACACAGAAGATGACCCACACAAGCGAAAACCTGATATCTCAAAGGCTAAAGAGTTACTTGGTTGGGAACCGAAAGTGGCTCTTAGAAATGGTTTGCCTATGATGGTTCAAGACTTCAGGCAACGTATTTTCGGTGATCACAAAGAAGAAAGTGCAAAGATCACCACAGCTTAATAGAAAAGAAAAGTGTGTTATGTTTGGATATTTGTTAAACTTGGTAAGGGGTGAAACGCACGCGAAGAAAAGACGACTCTCTTGTGTTGATGTTAGTTTCAAGCAGAAGTGCAGGCAGCAGAAGACTGAGCTGAGCTCCCCATGTACTTCTTTTGAATAGTTGGTTCTTTGTCAATTTTGCAATTCTATTATTAGTATTATTATCCTTTTGTTAACAGTTGATGTAGTAGACCAACTTTCATTATTCTCATAAGAATAAAACTGGTACGTATTTTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E240772" ref_strand="+" ref_description="SGN-E240772 [cLED-24-I2]">
      <seq>gaacatgtcggacccttcaacctcggaaaccctggtgaattcacaatgcttgaacttgctaaggtggtccaggaaaccattgacccaaatgcacagattgtacacaaaccaaacacagaagatgacccacacaagcgaaaacctgatatctcaaaggctaaagagttacttggttgggaaccgaaagtggctcttagaaatggtttgcctatgatggttcaagacttcaggcaacgtattttcggtgatcacaaagaagaaagtgcaaagatcaccacagcttaatagaaaagaaaagtgtgttatgtttggatatttgttaaacttggtaaggggtgaaacgcacgcgaagaaaagacgactctcttgtgttgatgttagtttcaagcagaagtgcaagcagcagaagactgagctgagctccccatgtacttcttttgaatagttggttctttgtcaattttgcaattctattatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="+" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="89775" stop="91146"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90075" g_stop="90137" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90138" i_stop="90430" i_length="293">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90431" g_stop="90846" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="479" r_length="416" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="+" ref_id="SGN-E240772" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240772" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90075" e_stop="90137"/>
          <exon e_start="90431" e_stop="90846"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACATGTCGGACCCTTCAACCTCGGAAACCCTGGTGAATTCACAATGCTTGAACTTGCTAAGGTATGTAACGACACACTTCTAAACATCCAACTTTGATGTTGTGTTTCTTTTGCATTAGCATTTTACATTGTCGTCAAGCTACAAAATCAGATTTCCGAGGAAAGGATAGAATGTACACCGATAAAATCAGTTTCATACGGCAATCATTTTCAGTCTTAAATCTAAGTTAGAAGTGTCTGAGCTTCATCATATGCACAGCTTCAGACATATGTCAAGTATTTCCAATGTGGGCTCTGTGATACTTTTACCATTTTGTTGACACATTGCCGTCTTTAATTGAATGCTGCACACAGGTGGTCCAGGAAACCATTGACCCAAATGCACAGATTGTACACAAACCAAACACAGAAGATGACCCACACAAGCGAAAACCTGATATCTCAAAGGCTAAAGAGTTACTTGGTTGGGAACCGAAAGTGGCTCTTAGAAATGGTTTGCCTATGATGGTTCAAGACTTCAGGCAACGTATTTTCGGTGATCACAAAGAAGAAAGTGCAAAGATCACCACAGCTTAATAGAAAAGAAAAGTGTGTTATGTTTGGATATTTGTTAAACTTGGTAAGGGGTGAAACGCACGCGAAGAAAAGACGACTCTCTTGTGTTGATGTTAGTTTCAAGCAGAAGTGCAGGCAGCAGAAGACTGAGCTGAGCTCCCCATGTACTTCTTTTGAATAGTTGGTTCTTTGTCAATTTTGCAATTCTATTATTA</genome_strand>
        <mrna_strand>GAACATGTCGGACCCTTCAACCTCGGAAACCCTGGTGAATTCACAATGCTTGAACTTGCTAAG.....................................................................................................................................................................................................................................................................................................GTGGTCCAGGAAACCATTGACCCAAATGCACAGATTGTACACAAACCAAACACAGAAGATGACCCACACAAGCGAAAACCTGATATCTCAAAGGCTAAAGAGTTACTTGGTTGGGAACCGAAAGTGGCTCTTAGAAATGGTTTGCCTATGATGGTTCAAGACTTCAGGCAACGTATTTTCGGTGATCACAAAGAAGAAAGTGCAAAGATCACCACAGCTTAATAGAAAAGAAAAGTGTGTTATGTTTGGATATTTGTTAAACTTGGTAAGGGGTGAAACGCACGCGAAGAAAAGACGACTCTCTTGTGTTGATGTTAGTTTCAAGCAGAAGTGCAAGCAGCAGAAGACTGAGCTGAGCTCCCCATGTACTTCTTTTGAATAGTTGGTTCTTTGTCAATTTTGCAATTCTATTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E238829" ref_strand="+" ref_description="SGN-E238829 [cLEL-9-B17](-)">
      <seq>ggcaccagaatcctatgaccagctaatatgtacggtaaatgtcttgcattaactccagatacattgtccatttgcgtgcgtgcttgtctatttaactatgtctagttctggcacatgcattggttggacaaatgcaatatcgagagtttgaaactgagaggcacggagatatcaagagtaaattattacccttggctgttatactgtgccccactaatttaattttggaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="92319" stop="91494"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92026" g_stop="91790" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="238" polyA_stop="251"/>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E238829" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>237</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238829" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92026" e_stop="91790"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATGTTGAATCCTATGACCAGCTAATATGTACGGTAAATGTCTTGCATTAACTCCAGATACATTGTCCATTTGCGTGCGTGCTTGTCTATTTAACTATGTCTAGTTCTGGCACATGCATTGGTTGGACAAATGCAATATCGAGAGTTTGAAACTGAGAGGCACGGAGATATCAAGAGTAAATTATTACCCTTGGCTGTTATGCTGTGCATCACTAATTTAATTTTGGAAGAAGCGG</genome_strand>
        <mrna_strand>GGCACCAGAATCCTATGACCAGCTAATATGTACGGTAAATGTCTTGCATTAACTCCAGATACATTGTCCATTTGCGTGCGTGCTTGTCTATTTAACTATGTCTAGTTCTGGCACATGCATTGGTTGGACAAATGCAATATCGAGAGTTTGAAACTGAGAGGCACGGAGATATCAAGAGTAAATTATTACCCTTGGCTGTTATACTGTGCCCCACTAATTTAATTTTGGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E238776" ref_strand="+" ref_description="SGN-E238776 [cLEL-9-B17](-)">
      <seq>ggcaccagaatcctatgaccagctaatatgtacggtaaatgtcttgcattaactccagatacattgtccatttgcgtgcgtgcttgtctatttaactatgtctagttctggcacatgcattggttggacaaatgcaatatcgagagtttgaaactgagaggcacggagatatcaagagtaaattattacccttggctgttatgctgtgcatcactaatttaattttggaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="92319" stop="91494"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92026" g_stop="91790" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="238" polyA_stop="251"/>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E238776" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>237</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238776" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92026" e_stop="91790"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATGTTGAATCCTATGACCAGCTAATATGTACGGTAAATGTCTTGCATTAACTCCAGATACATTGTCCATTTGCGTGCGTGCTTGTCTATTTAACTATGTCTAGTTCTGGCACATGCATTGGTTGGACAAATGCAATATCGAGAGTTTGAAACTGAGAGGCACGGAGATATCAAGAGTAAATTATTACCCTTGGCTGTTATGCTGTGCATCACTAATTTAATTTTGGAAGAAGCGG</genome_strand>
        <mrna_strand>GGCACCAGAATCCTATGACCAGCTAATATGTACGGTAAATGTCTTGCATTAACTCCAGATACATTGTCCATTTGCGTGCGTGCTTGTCTATTTAACTATGTCTAGTTCTGGCACATGCATTGGTTGGACAAATGCAATATCGAGAGTTTGAAACTGAGAGGCACGGAGATATCAAGAGTAAATTATTACCCTTGGCTGTTATGCTGTGCATCACTAATTTAATTTTGGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E348969" ref_strand="+" ref_description="SGN-E348969 [cTOF-29-O24]">
      <seq>tttaaaccctagctcctttgcccacttttttttgttgctcttcaatttcttctgcttgatcgaagatgaagtcgaccaatggaagaggatgcccctcaagggaaaaatgaggaagaggagttcaatactgggccactttctgtcctcatgatgagtgttaagaataacacacaggtgctcatcaactgtaggaacaacaggaaacttcttggtcgtgtgagagcatttgatcgtcactgcaatatggtgcttgaaaatgttagagaaatgtggactgaggtgcccaagactggaaaaggaaaaaagaaagctgttgctgttaacaaagataggtttatcagcaagatgttccttcggggagattctgtgatcattgtcctccgaaatcctaagtagagaggtgaattggatttctgtgctttggagcaaaacttgtaagcagctaggatttggaccagctctgtataacctttcgtattcgggaatttggctaggcagaacaccacctttgattgctgtaagacttgatataagattttgatgttctggtatgcctatatactgttgtcttcttcacaaacttattgtagacgttggagttntaacgttcttgttgtgtatgttgaatactatgaccagctaatatgtacggtaaatgtcttgcattaactccagatacattgtcattnntgcgtgcgtgcttgtctatttaactatggtctagttctggcacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="96052" stop="91610"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95752" g_stop="95683" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95682" i_stop="94951" i_length="732">
            <donor d_prob="0.950" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94950" g_stop="94926" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="96" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94925" i_stop="93847" i_length="1079">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93846" g_stop="93769" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="174" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93768" i_stop="93510" i_length="259">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93509" g_stop="93405" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="279" r_length="105" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="93404" i_stop="93211" i_length="194">
            <donor d_prob="0.639" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93210" g_stop="93090" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="400" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="93089" i_stop="92243" i_length="847">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="92242" g_stop="91910" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="736" r_length="336" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E348969" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348969" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95752" e_stop="95683"/>
          <exon e_start="94950" e_stop="94926"/>
          <exon e_start="93846" e_stop="93769"/>
          <exon e_start="93509" e_stop="93405"/>
          <exon e_start="93210" e_stop="93090"/>
          <exon e_start="92242" e_stop="91910"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAAACCCTAGCTCCTTTGCCCACTTTTTTTTGTTGCTCTTCAATTTCTTCTGCTTGATCGAAGATGA-GGTAATGGTTTACTGCTATTTTACACTTTGCCTTTGTACATTTGAAGTTCTTCAATTTTCTCTGTTTGATTTTTTCTCGTCATTGCAGTAACCTATTTAGTAGATTATGTAATGTTATTGTTAATCAAAGAAGTAGATAATTTTCCCTAGGTAAAGTAAGTTATTGGACGAGGAGATGAGAAATTGAAGAATTTTAGCTGTTTTCTGGACTAATTTTGTGTAGTTTTTTTTTTTTTTGGGTATTGCGTGCTTTTGGAAGTTTAAATTAGAGTGAGTAGATTCATATAACTGAAGGCAACTAGCTTGGCGTGAAGGCCTGGAATGTTTCTTTTTTCGAGTTCTATATGCAGTTTAAACACTATGCTAATTGGGTTTCATGTAGCTAAACAATTGTAAAGTTGGATTTTCGAGTAATTCAGTCTTCTCTAGCCCTTTATTACTACTGATCTTAGTTCTTTTTGTTCACTCTCTACTATATCCAAGCTTAAAACCTATGTTATTCCGTGCACATCAGTAATAGAACCCTTATATTGTCTAGAATACTAGGATAACAAGGCTGTAAGATGTACAAATAGAATTAAGAAAAAACTAGGTCAGTGTCTCATGTTTTTGTTGTTCATTGCTGATGTATTTCTCTATTCCTGTTGATTTTAGTGTTACCCAAATATTAGTAAGTGGAAGTTTCTAATTGTTTTGCTTTTTCTTTTTCTTTTCTATTTGTGCTCTTTTGCAGTCGACCAATGGAAGAGGATGCCCCTGTAAGTTAGCTTACTTTGCTAGTATTTTGCCCTATACAAAGCTCTCATTGTTTATTTTTCTCATTTTTTCATTGGCATAATCTGTGTTGTGATCTATTTTGTGTTTTAGGGGCTGTCTACTGCTTAGTACTTGTTTTCATTTTCCTTTCTGTTCACCTCAATGCGATGCATTCAATTAGATTTCTTTTGTTGGTAGCCTTGATCCTGCTTTACACGTTACAACTGAAAAGTTTCTAGCATACATCTTTTATTTTATCATATGGAGAATATGTTTATACCTCCCTTTTCAAAGCAAGATCATTGAATTGTTTGATCTGTAGAATATTTTTCAGCACATAACATCAAGTCATTGAATTTTTTTTGGTTAAGTCGTTTGAGTTCACCACTCAAAACAAATGACAAAATCAATTAGAACTTTAAAATAACAATGTAGCTAGGATGAATTTTTCTGTAAAAACTAGAACCTATCAAGTGTAAAAATTATTAGTTGAATTAGTAGAATTTATTTTCTACAGTTGTTTTGTTCCCACCTTCACACAAGTGTTATGTCAGTTTTTCTCATTTACCACATTGGATAACCCAGAAGCTAGGTCCGAACTTTGTAGTTCTCCCTTAACAGACATCCTATTGACATTTTTCTTATATTCTTGGTATGTTTATTTATACATGTACTCTTGTTCATTTTCCATTTGAGTTGCTTCTTGTTTGCCTTCCCGATGCCTAAAGTGCTTAGGTCTAAACTTTGTAGTTCTCCTTTAACAGACATCCTATTGACATTTCGTCTTTTATTCTTGGTATGTTTATTTATACATGTACTCTTGTTGTTCATTTTCCATTTGTGTTGCTTCTTATCTGCCTTCCCGATGTCAAAGTGCTTTGCTTCAAAGTTATCTAGATTAAGCACATAGTGAAAGAGTGTATAATTGGTAGATTATCTAGCTTAAGTACATAGTGAAAAAGTGTATGCCCTTCTATGTTGGTGTGATAGAGGAATGAACCTTATCAGTCCCAGTGAATATGATTTGCTTATCAGATTTTGTGAAAGATGTCTTATGTTTGCCTATGGATCTTTTGTCTAGCAAGGGAAAAATGAGGAAGAGGAGTTCAATACTGGGCCACTTTCTGTCCTCATGATGAGTGTTAAGAATAACACACAGGTATCTAATATCTTTAGCACCTACAACTGTGTCTTTCTTCATGTCGTGTTTATTTATCAATTTTAATTGTTAAAAAGAGAGATAAAATCTATCCTGGAGCCTTGTTTATGTTGACAATTTACTTTTTAAAGTCATGCCGGTATACTTCCTCATTAATCTTAGATTTAAATACTATAGAAAAAGATGCAAGCTTCGGTTTTGTATGTGGAAGGCATCAGCTTTGTGCTTGTTATTTTACAGATATTTTTTCTGGATCTAGGTGCTCATCAACTGTAGGAACAACAGGAAACTTTTTGGTCGTGTGAGAGCATTTGATTGTCACTGCAATATGGTGCTTGAAAATGTTAGAGAAATGTGGACTGAGGTTTGTTTGTTCTTGACTTAATCAACTTTTTGGGACAATGTGTATTGTGTCTTGGATCTGTATCTTGCGTCAAAAAGCTCCAGTTACCAAGATTGTTTATATTATTTTTCAGGTTCCTAAGGGCAATGTGTCTTGGATTTGAAACTTGTACAAAAAGACTCCACTTAACAAAGTTGTTTATGTTTATTCTTCAGGTGCCCAAGACTGGAAAAGGAAAAAAGAAAGCTGTTGCTGTTAACAAAGATAGGTTTATCAGCAAGATGTTCCTTCGGGGAGATTCTGTGATCATTGTCCTCCGAAATCCTAAGTAGAGAGGTACTGTTGGATCTTTGACATAGTGGTTGGAGTAATTTTCTTTGAATTATGAGCTAGTTCCTTTAATTGGTCCATGTTTGAAGTGCAATATCCTTTTAACTTGCTATTATGTAATCAAATGTTTGGTATATAAGAACTGTAAATGCTAAGTAATATTTGTTGAATCCATTATTGTGAAATTTATCAATTTATTATCATAAATAAAATTTGGAACTTCAAAAATGATTAACTCTTAGCATTTAAATAATTGTCTTTTCTGATGAACTATGAAGATCTATAATAAATGAAATATAACGTTCCTATAAATATCAGAAAAATGTGTATACATATGATAGGAAGCTCAAGGTTGGGATCAGGAAACAAACTAGTGGATTAAAATCTGCAAGTTCTATTCTCCAAGTTTAGCTAATGAAGTATGAAGACTGTAAAAATGGTACTGAAAGAACTAACCTCATGCTCGAAAAACTCTCCTGCTAGAGCAGTGCATGGGATTAGGAAGAGCATGAGAACATATATTGTTTTCACTGCTTCCCTTTTATCTCTTGTTGAGCAAAAGATCTATCGGTAACATCATCTCTTACCTTACAAGGTAGGGGAAAGTTTTGTGTACACGTTACCCTCCTCACCAAACCCCACTTGTTGGGATTCATTCTGGGGTTTGTTGTTTTTGGACATATTTCTGTCTGCATACAAAAATGTTCCATTTCGTCTTCTTTTTTCTACTTGAAATGCATTTCTGTGTGGTTATGCACATTCTTAATTTTTCCCTTGGTGTTCCCACATTTTTGTTTGCCTGTATTTAATTATCTGATCGTTGGTAGTAATTCAATACACTTGTGTACTGCAGGTGAATTGGATTTCTGTGCTTTGGAGCAAAACTTGTAAGCAGCTAGGATTTGGACCAGCTCTGTATAACCTTTCGTATTCGGGAATTTGGCTAGGCAGAACACCACCTTTGATTGCTGTAAGACTTGATATAAGATTTTGATGTTCTGGTATG-CTATATACTGTTGTCTTCTTCACAAACTTATTGTAGACGTTGGAGTTTTAACGTTCTTGTTGTGTATGTTGAATCCTATGACCAGCTAATATGTACGGTAAATGTCTTGCATTAACTCCAGATACATTGTCCAT-TTGCGTGCGTGCTTGTCTATTTAACTAT-GTCTAGTTCTGGCACATG</genome_strand>
        <mrna_strand>TTTAAACCCTAGCTCCTTTGCCCACTTTTTTTTGTTGCTCTTCAATTTCTTCTGCTTGATCGAAGATGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGACCAATGGAAGAGGATGCCCCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGGAAAAATGAGGAAGAGGAGTTCAATACTGGGCCACTTTCTGTCCTCATGATGAGTGTTAAGAATAACACACAG...................................................................................................................................................................................................................................................................GTGCTCATCAACTGTAGGAACAACAGGAAACTTCTTGGTCGTGTGAGAGCATTTGATCGTCACTGCAATATGGTGCTTGAAAATGTTAGAGAAATGTGGACTGAG..................................................................................................................................................................................................GTGCCCAAGACTGGAAAAGGAAAAAAGAAAGCTGTTGCTGTTAACAAAGATAGGTTTATCAGCAAGATGTTCCTTCGGGGAGATTCTGTGATCATTGTCCTCCGAAATCCTAAGTAGAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATTGGATTTCTGTGCTTTGGAGCAAAACTTGTAAGCAGCTAGGATTTGGACCAGCTCTGTATAACCTTTCGTATTCGGGAATTTGGCTAGGCAGAACACCACCTTTGATTGCTGTAAGACTTGATATAAGATTTTGATGTTCTGGTATGCCTATATACTGTTGTCTTCTTCACAAACTTATTGTAGACGTTGGAGTTNTAACGTTCTTGTTGTGTATGTTGAATACTATGACCAGCTAATATGTACGGTAAATGTCTTGCATTAACTCCAGATACATTGTCATTNNTGCGTGCGTGCTTGTCTATTTAACTATGGTCTAGTTCTGGCACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714277" ref_strand="+" ref_description="SGN-E714277 [FB11AA04]">
      <seq>cctttaccctctttaaaccctagctcttttgcccccttttctttgttgctcttcaattttttctgcttgatcgaagatgagtcgaccaatggaagaggatgcccctcaagggaaaaatgaggaagaggagttcaatactgggccactttctgtcctcatgatgagtgttaagaataacacacaggtgctcatcaactgtaggaacaacaggaaacttcttggtcgtgtgagagcatttgatcgtcactgcaatatggtgcttgaaaatgttagagaaatgtggactgaggtgcccaagactggaaaaggaaaaaagaaagctgttgctgttaacaaagataggtttatcagcaagatgttccttcggggagattctgtgatcattgtcctccgaaatcccaagtagagaggtgaattggatttctgtgctttggagcaaaacttgtaagcagctaggatttggaccagctctgtataacctttcgtattcgggaatttggctaggcagaacaccacctttgattgctgtaagacttgatataagattttgatgttctggtatgctatatactgttgtcttcttcacaaacttattgtagacgttggagtttaacgttctttttgtgtatgttgaatcctatgaccagctaatatgtacggtaaatgtcttgcattaactccaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="96063" stop="91664"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95763" g_stop="95683" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95682" i_stop="94951" i_length="732">
            <donor d_prob="0.950" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94950" g_stop="94926" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="106" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94925" i_stop="93847" i_length="1079">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93846" g_stop="93769" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="184" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93768" i_stop="93510" i_length="259">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93509" g_stop="93405" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="289" r_length="105" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="93404" i_stop="93211" i_length="194">
            <donor d_prob="0.639" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93210" g_stop="93090" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="410" r_length="121" r_score="0.992"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="93089" i_stop="92243" i_length="847">
            <donor d_prob="0.952" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="92242" g_stop="91959" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="693" r_length="283" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E714277" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714277" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95763" e_stop="95683"/>
          <exon e_start="94950" e_stop="94926"/>
          <exon e_start="93846" e_stop="93769"/>
          <exon e_start="93509" e_stop="93405"/>
          <exon e_start="93210" e_stop="93090"/>
          <exon e_start="92242" e_stop="91959"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTACCCTCTTTAAACCCTAGCTCCTTTGCCCACTTTTTTTTGTTGCTCTTCAATTTCTTCTGCTTGATCGAAGATGAGGTAATGGTTTACTGCTATTTTACACTTTGCCTTTGTACATTTGAAGTTCTTCAATTTTCTCTGTTTGATTTTTTCTCGTCATTGCAGTAACCTATTTAGTAGATTATGTAATGTTATTGTTAATCAAAGAAGTAGATAATTTTCCCTAGGTAAAGTAAGTTATTGGACGAGGAGATGAGAAATTGAAGAATTTTAGCTGTTTTCTGGACTAATTTTGTGTAGTTTTTTTTTTTTTTGGGTATTGCGTGCTTTTGGAAGTTTAAATTAGAGTGAGTAGATTCATATAACTGAAGGCAACTAGCTTGGCGTGAAGGCCTGGAATGTTTCTTTTTTCGAGTTCTATATGCAGTTTAAACACTATGCTAATTGGGTTTCATGTAGCTAAACAATTGTAAAGTTGGATTTTCGAGTAATTCAGTCTTCTCTAGCCCTTTATTACTACTGATCTTAGTTCTTTTTGTTCACTCTCTACTATATCCAAGCTTAAAACCTATGTTATTCCGTGCACATCAGTAATAGAACCCTTATATTGTCTAGAATACTAGGATAACAAGGCTGTAAGATGTACAAATAGAATTAAGAAAAAACTAGGTCAGTGTCTCATGTTTTTGTTGTTCATTGCTGATGTATTTCTCTATTCCTGTTGATTTTAGTGTTACCCAAATATTAGTAAGTGGAAGTTTCTAATTGTTTTGCTTTTTCTTTTTCTTTTCTATTTGTGCTCTTTTGCAGTCGACCAATGGAAGAGGATGCCCCTGTAAGTTAGCTTACTTTGCTAGTATTTTGCCCTATACAAAGCTCTCATTGTTTATTTTTCTCATTTTTTCATTGGCATAATCTGTGTTGTGATCTATTTTGTGTTTTAGGGGCTGTCTACTGCTTAGTACTTGTTTTCATTTTCCTTTCTGTTCACCTCAATGCGATGCATTCAATTAGATTTCTTTTGTTGGTAGCCTTGATCCTGCTTTACACGTTACAACTGAAAAGTTTCTAGCATACATCTTTTATTTTATCATATGGAGAATATGTTTATACCTCCCTTTTCAAAGCAAGATCATTGAATTGTTTGATCTGTAGAATATTTTTCAGCACATAACATCAAGTCATTGAATTTTTTTTGGTTAAGTCGTTTGAGTTCACCACTCAAAACAAATGACAAAATCAATTAGAACTTTAAAATAACAATGTAGCTAGGATGAATTTTTCTGTAAAAACTAGAACCTATCAAGTGTAAAAATTATTAGTTGAATTAGTAGAATTTATTTTCTACAGTTGTTTTGTTCCCACCTTCACACAAGTGTTATGTCAGTTTTTCTCATTTACCACATTGGATAACCCAGAAGCTAGGTCCGAACTTTGTAGTTCTCCCTTAACAGACATCCTATTGACATTTTTCTTATATTCTTGGTATGTTTATTTATACATGTACTCTTGTTCATTTTCCATTTGAGTTGCTTCTTGTTTGCCTTCCCGATGCCTAAAGTGCTTAGGTCTAAACTTTGTAGTTCTCCTTTAACAGACATCCTATTGACATTTCGTCTTTTATTCTTGGTATGTTTATTTATACATGTACTCTTGTTGTTCATTTTCCATTTGTGTTGCTTCTTATCTGCCTTCCCGATGTCAAAGTGCTTTGCTTCAAAGTTATCTAGATTAAGCACATAGTGAAAGAGTGTATAATTGGTAGATTATCTAGCTTAAGTACATAGTGAAAAAGTGTATGCCCTTCTATGTTGGTGTGATAGAGGAATGAACCTTATCAGTCCCAGTGAATATGATTTGCTTATCAGATTTTGTGAAAGATGTCTTATGTTTGCCTATGGATCTTTTGTCTAGCAAGGGAAAAATGAGGAAGAGGAGTTCAATACTGGGCCACTTTCTGTCCTCATGATGAGTGTTAAGAATAACACACAGGTATCTAATATCTTTAGCACCTACAACTGTGTCTTTCTTCATGTCGTGTTTATTTATCAATTTTAATTGTTAAAAAGAGAGATAAAATCTATCCTGGAGCCTTGTTTATGTTGACAATTTACTTTTTAAAGTCATGCCGGTATACTTCCTCATTAATCTTAGATTTAAATACTATAGAAAAAGATGCAAGCTTCGGTTTTGTATGTGGAAGGCATCAGCTTTGTGCTTGTTATTTTACAGATATTTTTTCTGGATCTAGGTGCTCATCAACTGTAGGAACAACAGGAAACTTTTTGGTCGTGTGAGAGCATTTGATTGTCACTGCAATATGGTGCTTGAAAATGTTAGAGAAATGTGGACTGAGGTTTGTTTGTTCTTGACTTAATCAACTTTTTGGGACAATGTGTATTGTGTCTTGGATCTGTATCTTGCGTCAAAAAGCTCCAGTTACCAAGATTGTTTATATTATTTTTCAGGTTCCTAAGGGCAATGTGTCTTGGATTTGAAACTTGTACAAAAAGACTCCACTTAACAAAGTTGTTTATGTTTATTCTTCAGGTGCCCAAGACTGGAAAAGGAAAAAAGAAAGCTGTTGCTGTTAACAAAGATAGGTTTATCAGCAAGATGTTCCTTCGGGGAGATTCTGTGATCATTGTCCTCCGAAATCCTAAGTAGAGAGGTACTGTTGGATCTTTGACATAGTGGTTGGAGTAATTTTCTTTGAATTATGAGCTAGTTCCTTTAATTGGTCCATGTTTGAAGTGCAATATCCTTTTAACTTGCTATTATGTAATCAAATGTTTGGTATATAAGAACTGTAAATGCTAAGTAATATTTGTTGAATCCATTATTGTGAAATTTATCAATTTATTATCATAAATAAAATTTGGAACTTCAAAAATGATTAACTCTTAGCATTTAAATAATTGTCTTTTCTGATGAACTATGAAGATCTATAATAAATGAAATATAACGTTCCTATAAATATCAGAAAAATGTGTATACATATGATAGGAAGCTCAAGGTTGGGATCAGGAAACAAACTAGTGGATTAAAATCTGCAAGTTCTATTCTCCAAGTTTAGCTAATGAAGTATGAAGACTGTAAAAATGGTACTGAAAGAACTAACCTCATGCTCGAAAAACTCTCCTGCTAGAGCAGTGCATGGGATTAGGAAGAGCATGAGAACATATATTGTTTTCACTGCTTCCCTTTTATCTCTTGTTGAGCAAAAGATCTATCGGTAACATCATCTCTTACCTTACAAGGTAGGGGAAAGTTTTGTGTACACGTTACCCTCCTCACCAAACCCCACTTGTTGGGATTCATTCTGGGGTTTGTTGTTTTTGGACATATTTCTGTCTGCATACAAAAATGTTCCATTTCGTCTTCTTTTTTCTACTTGAAATGCATTTCTGTGTGGTTATGCACATTCTTAATTTTTCCCTTGGTGTTCCCACATTTTTGTTTGCCTGTATTTAATTATCTGATCGTTGGTAGTAATTCAATACACTTGTGTACTGCAGGTGAATTGGATTTCTGTGCTTTGGAGCAAAACTTGTAAGCAGCTAGGATTTGGACCAGCTCTGTATAACCTTTCGTATTCGGGAATTTGGCTAGGCAGAACACCACCTTTGATTGCTGTAAGACTTGATATAAGATTTTGATGTTCTGGTATGCTATATACTGTTGTCTTCTTCACAAACTTATTGTAGACGTTGGAGTTTTAACGTTCTTGTTGTGTATGTTGAATCCTATGACCAGCTAATATGTACGGTAAATGTCTTGCATTAACTCCAGATACATTGTC</genome_strand>
        <mrna_strand>CCTTTACCCTCTTTAAACCCTAGCTCTTTTGCCCCCTTTTCTTTGTTGCTCTTCAATTTTTTCTGCTTGATCGAAGATGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGACCAATGGAAGAGGATGCCCCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGGAAAAATGAGGAAGAGGAGTTCAATACTGGGCCACTTTCTGTCCTCATGATGAGTGTTAAGAATAACACACAG...................................................................................................................................................................................................................................................................GTGCTCATCAACTGTAGGAACAACAGGAAACTTCTTGGTCGTGTGAGAGCATTTGATCGTCACTGCAATATGGTGCTTGAAAATGTTAGAGAAATGTGGACTGAG..................................................................................................................................................................................................GTGCCCAAGACTGGAAAAGGAAAAAAGAAAGCTGTTGCTGTTAACAAAGATAGGTTTATCAGCAAGATGTTCCTTCGGGGAGATTCTGTGATCATTGTCCTCCGAAATCCCAAGTAGAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATTGGATTTCTGTGCTTTGGAGCAAAACTTGTAAGCAGCTAGGATTTGGACCAGCTCTGTATAACCTTTCGTATTCGGGAATTTGGCTAGGCAGAACACCACCTTTGATTGCTGTAAGACTTGATATAAGATTTTGATGTTCTGGTATGCTATATACTGTTGTCTTCTTCACAAACTTATTGTAGACGTTGGAG-TTTAACGTTCTTTTTGTGTATGTTGAATCCTATGACCAGCTAATATGTACGGTAAATGTCTTGCATTAACTCCAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E371426" ref_strand="+" ref_description="SGN-E371426 [TUS-29-F16](-)">
      <seq>gttttgattatgatcttgtaagcgtagacaaaaatttgcccacttttttttgttgctcttcaatttcttctgcttgatcgaagatgagtcgaccaatggaagaggatgcccctcaagggaaaaatgaggaagaggagttcaatactgggccactttctgtcctcatgatgagtgttaagaataacacacaggtgctcatcaactgtaggaacaacaggaaacttcttggtcgtgtgagagcatttgatcgtcactgcaatatggtgcttgaaaatgttagagaaatgtggactgaggtgcccaagactggaaaaggaaaaaagaaagctgttgctgttaacaaagataggtttatcagcaagatgttccttcggggagattctgtgatcattgtcctccgaaatcctaagtagagaggtgaattggatttctgtgctttggagcaaaacttgtaagcagctaggatttggaccagctctgtataacctttcgtattcgggaatttggctaggcagaacaccacctttgattgctgtaagacttgatataagattttgatgttctggtatgctatatactgttgtcttcttcacaaacttattgtagacgttggagttttaacgttcttgttgtgtatgttgaatcctatgaccagctaatatgtacggtaaatgtcttgcattaactccaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="96036" stop="91664"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95736" g_stop="95683" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="88" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95682" i_stop="94951" i_length="732">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94950" g_stop="94926" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="113" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94925" i_stop="93847" i_length="1079">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93846" g_stop="93769" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="191" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93768" i_stop="93510" i_length="259">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93509" g_stop="93405" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="296" r_length="105" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="93404" i_stop="93211" i_length="194">
            <donor d_prob="0.639" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93210" g_stop="93090" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="417" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="93089" i_stop="92243" i_length="847">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="92242" g_stop="91959" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="701" r_length="284" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E371426" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371426" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95736" e_stop="95683"/>
          <exon e_start="94950" e_stop="94926"/>
          <exon e_start="93846" e_stop="93769"/>
          <exon e_start="93509" e_stop="93405"/>
          <exon e_start="93210" e_stop="93090"/>
          <exon e_start="92242" e_stop="91959"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCCCACTTTTTTTTGTTGCTCTTCAATTTCTTCTGCTTGATCGAAGATGAGGTAATGGTTTACTGCTATTTTACACTTTGCCTTTGTACATTTGAAGTTCTTCAATTTTCTCTGTTTGATTTTTTCTCGTCATTGCAGTAACCTATTTAGTAGATTATGTAATGTTATTGTTAATCAAAGAAGTAGATAATTTTCCCTAGGTAAAGTAAGTTATTGGACGAGGAGATGAGAAATTGAAGAATTTTAGCTGTTTTCTGGACTAATTTTGTGTAGTTTTTTTTTTTTTTGGGTATTGCGTGCTTTTGGAAGTTTAAATTAGAGTGAGTAGATTCATATAACTGAAGGCAACTAGCTTGGCGTGAAGGCCTGGAATGTTTCTTTTTTCGAGTTCTATATGCAGTTTAAACACTATGCTAATTGGGTTTCATGTAGCTAAACAATTGTAAAGTTGGATTTTCGAGTAATTCAGTCTTCTCTAGCCCTTTATTACTACTGATCTTAGTTCTTTTTGTTCACTCTCTACTATATCCAAGCTTAAAACCTATGTTATTCCGTGCACATCAGTAATAGAACCCTTATATTGTCTAGAATACTAGGATAACAAGGCTGTAAGATGTACAAATAGAATTAAGAAAAAACTAGGTCAGTGTCTCATGTTTTTGTTGTTCATTGCTGATGTATTTCTCTATTCCTGTTGATTTTAGTGTTACCCAAATATTAGTAAGTGGAAGTTTCTAATTGTTTTGCTTTTTCTTTTTCTTTTCTATTTGTGCTCTTTTGCAGTCGACCAATGGAAGAGGATGCCCCTGTAAGTTAGCTTACTTTGCTAGTATTTTGCCCTATACAAAGCTCTCATTGTTTATTTTTCTCATTTTTTCATTGGCATAATCTGTGTTGTGATCTATTTTGTGTTTTAGGGGCTGTCTACTGCTTAGTACTTGTTTTCATTTTCCTTTCTGTTCACCTCAATGCGATGCATTCAATTAGATTTCTTTTGTTGGTAGCCTTGATCCTGCTTTACACGTTACAACTGAAAAGTTTCTAGCATACATCTTTTATTTTATCATATGGAGAATATGTTTATACCTCCCTTTTCAAAGCAAGATCATTGAATTGTTTGATCTGTAGAATATTTTTCAGCACATAACATCAAGTCATTGAATTTTTTTTGGTTAAGTCGTTTGAGTTCACCACTCAAAACAAATGACAAAATCAATTAGAACTTTAAAATAACAATGTAGCTAGGATGAATTTTTCTGTAAAAACTAGAACCTATCAAGTGTAAAAATTATTAGTTGAATTAGTAGAATTTATTTTCTACAGTTGTTTTGTTCCCACCTTCACACAAGTGTTATGTCAGTTTTTCTCATTTACCACATTGGATAACCCAGAAGCTAGGTCCGAACTTTGTAGTTCTCCCTTAACAGACATCCTATTGACATTTTTCTTATATTCTTGGTATGTTTATTTATACATGTACTCTTGTTCATTTTCCATTTGAGTTGCTTCTTGTTTGCCTTCCCGATGCCTAAAGTGCTTAGGTCTAAACTTTGTAGTTCTCCTTTAACAGACATCCTATTGACATTTCGTCTTTTATTCTTGGTATGTTTATTTATACATGTACTCTTGTTGTTCATTTTCCATTTGTGTTGCTTCTTATCTGCCTTCCCGATGTCAAAGTGCTTTGCTTCAAAGTTATCTAGATTAAGCACATAGTGAAAGAGTGTATAATTGGTAGATTATCTAGCTTAAGTACATAGTGAAAAAGTGTATGCCCTTCTATGTTGGTGTGATAGAGGAATGAACCTTATCAGTCCCAGTGAATATGATTTGCTTATCAGATTTTGTGAAAGATGTCTTATGTTTGCCTATGGATCTTTTGTCTAGCAAGGGAAAAATGAGGAAGAGGAGTTCAATACTGGGCCACTTTCTGTCCTCATGATGAGTGTTAAGAATAACACACAGGTATCTAATATCTTTAGCACCTACAACTGTGTCTTTCTTCATGTCGTGTTTATTTATCAATTTTAATTGTTAAAAAGAGAGATAAAATCTATCCTGGAGCCTTGTTTATGTTGACAATTTACTTTTTAAAGTCATGCCGGTATACTTCCTCATTAATCTTAGATTTAAATACTATAGAAAAAGATGCAAGCTTCGGTTTTGTATGTGGAAGGCATCAGCTTTGTGCTTGTTATTTTACAGATATTTTTTCTGGATCTAGGTGCTCATCAACTGTAGGAACAACAGGAAACTTTTTGGTCGTGTGAGAGCATTTGATTGTCACTGCAATATGGTGCTTGAAAATGTTAGAGAAATGTGGACTGAGGTTTGTTTGTTCTTGACTTAATCAACTTTTTGGGACAATGTGTATTGTGTCTTGGATCTGTATCTTGCGTCAAAAAGCTCCAGTTACCAAGATTGTTTATATTATTTTTCAGGTTCCTAAGGGCAATGTGTCTTGGATTTGAAACTTGTACAAAAAGACTCCACTTAACAAAGTTGTTTATGTTTATTCTTCAGGTGCCCAAGACTGGAAAAGGAAAAAAGAAAGCTGTTGCTGTTAACAAAGATAGGTTTATCAGCAAGATGTTCCTTCGGGGAGATTCTGTGATCATTGTCCTCCGAAATCCTAAGTAGAGAGGTACTGTTGGATCTTTGACATAGTGGTTGGAGTAATTTTCTTTGAATTATGAGCTAGTTCCTTTAATTGGTCCATGTTTGAAGTGCAATATCCTTTTAACTTGCTATTATGTAATCAAATGTTTGGTATATAAGAACTGTAAATGCTAAGTAATATTTGTTGAATCCATTATTGTGAAATTTATCAATTTATTATCATAAATAAAATTTGGAACTTCAAAAATGATTAACTCTTAGCATTTAAATAATTGTCTTTTCTGATGAACTATGAAGATCTATAATAAATGAAATATAACGTTCCTATAAATATCAGAAAAATGTGTATACATATGATAGGAAGCTCAAGGTTGGGATCAGGAAACAAACTAGTGGATTAAAATCTGCAAGTTCTATTCTCCAAGTTTAGCTAATGAAGTATGAAGACTGTAAAAATGGTACTGAAAGAACTAACCTCATGCTCGAAAAACTCTCCTGCTAGAGCAGTGCATGGGATTAGGAAGAGCATGAGAACATATATTGTTTTCACTGCTTCCCTTTTATCTCTTGTTGAGCAAAAGATCTATCGGTAACATCATCTCTTACCTTACAAGGTAGGGGAAAGTTTTGTGTACACGTTACCCTCCTCACCAAACCCCACTTGTTGGGATTCATTCTGGGGTTTGTTGTTTTTGGACATATTTCTGTCTGCATACAAAAATGTTCCATTTCGTCTTCTTTTTTCTACTTGAAATGCATTTCTGTGTGGTTATGCACATTCTTAATTTTTCCCTTGGTGTTCCCACATTTTTGTTTGCCTGTATTTAATTATCTGATCGTTGGTAGTAATTCAATACACTTGTGTACTGCAGGTGAATTGGATTTCTGTGCTTTGGAGCAAAACTTGTAAGCAGCTAGGATTTGGACCAGCTCTGTATAACCTTTCGTATTCGGGAATTTGGCTAGGCAGAACACCACCTTTGATTGCTGTAAGACTTGATATAAGATTTTGATGTTCTGGTATGCTATATACTGTTGTCTTCTTCACAAACTTATTGTAGACGTTGGAGTTTTAACGTTCTTGTTGTGTATGTTGAATCCTATGACCAGCTAATATGTACGGTAAATGTCTTGCATTAACTCCAGATACATTGTC</genome_strand>
        <mrna_strand>TTTGCCCACTTTTTTTTGTTGCTCTTCAATTTCTTCTGCTTGATCGAAGATGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGACCAATGGAAGAGGATGCCCCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGGAAAAATGAGGAAGAGGAGTTCAATACTGGGCCACTTTCTGTCCTCATGATGAGTGTTAAGAATAACACACAG...................................................................................................................................................................................................................................................................GTGCTCATCAACTGTAGGAACAACAGGAAACTTCTTGGTCGTGTGAGAGCATTTGATCGTCACTGCAATATGGTGCTTGAAAATGTTAGAGAAATGTGGACTGAG..................................................................................................................................................................................................GTGCCCAAGACTGGAAAAGGAAAAAAGAAAGCTGTTGCTGTTAACAAAGATAGGTTTATCAGCAAGATGTTCCTTCGGGGAGATTCTGTGATCATTGTCCTCCGAAATCCTAAGTAGAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATTGGATTTCTGTGCTTTGGAGCAAAACTTGTAAGCAGCTAGGATTTGGACCAGCTCTGTATAACCTTTCGTATTCGGGAATTTGGCTAGGCAGAACACCACCTTTGATTGCTGTAAGACTTGATATAAGATTTTGATGTTCTGGTATGCTATATACTGTTGTCTTCTTCACAAACTTATTGTAGACGTTGGAGTTTTAACGTTCTTGTTGTGTATGTTGAATCCTATGACCAGCTAATATGTACGGTAAATGTCTTGCATTAACTCCAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E371052" ref_strand="+" ref_description="SGN-E371052 [TUS-29-F15](-)">
      <seq>agggaaaaatgaggaagaggagttcaatactgggccactttctgtcctcatgatgagtgttaagaataacacacaggtgctcatcaactgtaggaacaacaggaaacttcttggtcgtgtgagagcatttgatcgtcactgcaatatggtgcttgaaaatgttagagaaatgtggactgaggtgcccaagactggaaaaggaaaaaagaaagctgttgctgttaacaaagataggtttatcagcaagatgttccttcggggagattctgtgatcattgtcctccgaaatcctaagtagagaggtgaattggatttctgtgctttggagcaaaacttgtaagcagctaggatttggaccagctctgtataacctttcgtattcgggaatttggctaggcagaacaccacctttgattgctgtaagacttgatataagattttgatgttctggtatgctatatactgttgtcttcttcacaaacttattgtagacgttggagttttaacgttcttgttgtgtatgttgaatcctatgaccagcataatatgtacggtaaatgtcttgcaataaatccaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="94144" stop="91664"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93844" g_stop="93769" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93768" i_stop="93510" i_length="259">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93509" g_stop="93405" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="181" r_length="105" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93404" i_stop="93211" i_length="194">
            <donor d_prob="0.639" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93210" g_stop="93090" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="302" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93089" i_stop="92243" i_length="847">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92242" g_stop="91959" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="587" r_length="285" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E371052" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371052" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93844" e_stop="93769"/>
          <exon e_start="93509" e_stop="93405"/>
          <exon e_start="93210" e_stop="93090"/>
          <exon e_start="92242" e_stop="91959"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGAAAAATGAGGAAGAGGAGTTCAATACTGGGCCACTTTCTGTCCTCATGATGAGTGTTAAGAATAACACACAGGTATCTAATATCTTTAGCACCTACAACTGTGTCTTTCTTCATGTCGTGTTTATTTATCAATTTTAATTGTTAAAAAGAGAGATAAAATCTATCCTGGAGCCTTGTTTATGTTGACAATTTACTTTTTAAAGTCATGCCGGTATACTTCCTCATTAATCTTAGATTTAAATACTATAGAAAAAGATGCAAGCTTCGGTTTTGTATGTGGAAGGCATCAGCTTTGTGCTTGTTATTTTACAGATATTTTTTCTGGATCTAGGTGCTCATCAACTGTAGGAACAACAGGAAACTTTTTGGTCGTGTGAGAGCATTTGATTGTCACTGCAATATGGTGCTTGAAAATGTTAGAGAAATGTGGACTGAGGTTTGTTTGTTCTTGACTTAATCAACTTTTTGGGACAATGTGTATTGTGTCTTGGATCTGTATCTTGCGTCAAAAAGCTCCAGTTACCAAGATTGTTTATATTATTTTTCAGGTTCCTAAGGGCAATGTGTCTTGGATTTGAAACTTGTACAAAAAGACTCCACTTAACAAAGTTGTTTATGTTTATTCTTCAGGTGCCCAAGACTGGAAAAGGAAAAAAGAAAGCTGTTGCTGTTAACAAAGATAGGTTTATCAGCAAGATGTTCCTTCGGGGAGATTCTGTGATCATTGTCCTCCGAAATCCTAAGTAGAGAGGTACTGTTGGATCTTTGACATAGTGGTTGGAGTAATTTTCTTTGAATTATGAGCTAGTTCCTTTAATTGGTCCATGTTTGAAGTGCAATATCCTTTTAACTTGCTATTATGTAATCAAATGTTTGGTATATAAGAACTGTAAATGCTAAGTAATATTTGTTGAATCCATTATTGTGAAATTTATCAATTTATTATCATAAATAAAATTTGGAACTTCAAAAATGATTAACTCTTAGCATTTAAATAATTGTCTTTTCTGATGAACTATGAAGATCTATAATAAATGAAATATAACGTTCCTATAAATATCAGAAAAATGTGTATACATATGATAGGAAGCTCAAGGTTGGGATCAGGAAACAAACTAGTGGATTAAAATCTGCAAGTTCTATTCTCCAAGTTTAGCTAATGAAGTATGAAGACTGTAAAAATGGTACTGAAAGAACTAACCTCATGCTCGAAAAACTCTCCTGCTAGAGCAGTGCATGGGATTAGGAAGAGCATGAGAACATATATTGTTTTCACTGCTTCCCTTTTATCTCTTGTTGAGCAAAAGATCTATCGGTAACATCATCTCTTACCTTACAAGGTAGGGGAAAGTTTTGTGTACACGTTACCCTCCTCACCAAACCCCACTTGTTGGGATTCATTCTGGGGTTTGTTGTTTTTGGACATATTTCTGTCTGCATACAAAAATGTTCCATTTCGTCTTCTTTTTTCTACTTGAAATGCATTTCTGTGTGGTTATGCACATTCTTAATTTTTCCCTTGGTGTTCCCACATTTTTGTTTGCCTGTATTTAATTATCTGATCGTTGGTAGTAATTCAATACACTTGTGTACTGCAGGTGAATTGGATTTCTGTGCTTTGGAGCAAAACTTGTAAGCAGCTAGGATTTGGACCAGCTCTGTATAACCTTTCGTATTCGGGAATTTGGCTAGGCAGAACACCACCTTTGATTGCTGTAAGACTTGATATAAGATTTTGATGTTCTGGTATGCTATATACTGTTGTCTTCTTCACAAACTTATTGTAGACGTTGGAGTTTTAACGTTCTTGTTGTGTATGTTGAATCCTATGACCAGC-TAATATGTACGGTAAATGTCTTGCATTAACTCCAGATACATTGTC</genome_strand>
        <mrna_strand>AGGGAAAAATGAGGAAGAGGAGTTCAATACTGGGCCACTTTCTGTCCTCATGATGAGTGTTAAGAATAACACACAG...................................................................................................................................................................................................................................................................GTGCTCATCAACTGTAGGAACAACAGGAAACTTCTTGGTCGTGTGAGAGCATTTGATCGTCACTGCAATATGGTGCTTGAAAATGTTAGAGAAATGTGGACTGAG..................................................................................................................................................................................................GTGCCCAAGACTGGAAAAGGAAAAAAGAAAGCTGTTGCTGTTAACAAAGATAGGTTTATCAGCAAGATGTTCCTTCGGGGAGATTCTGTGATCATTGTCCTCCGAAATCCTAAGTAGAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATTGGATTTCTGTGCTTTGGAGCAAAACTTGTAAGCAGCTAGGATTTGGACCAGCTCTGTATAACCTTTCGTATTCGGGAATTTGGCTAGGCAGAACACCACCTTTGATTGCTGTAAGACTTGATATAAGATTTTGATGTTCTGGTATGCTATATACTGTTGTCTTCTTCACAAACTTATTGTAGACGTTGGAGTTTTAACGTTCTTGTTGTGTATGTTGAATCCTATGACCAGCATAATATGTACGGTAAATGTCTTGCAATAAATCCAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E280282" ref_strand="+" ref_description="SGN-E280282 [cLER-1-E9](-)">
      <seq>tttctgtcctcatgatgagtgttaagaataacaccgaggtgctcatcaactgtaggaccaacaggaaacttcttggtcgtgtgagagcatttgatcgtcactgcaatatggtgcttgaaaatgttagagaaatgtggactgaggtgcccaagactggaaaaggaaaaaagaaagctgttgctgttaacaaagataggtttatcagcaagatgttccttcggggagattctgtgatcattgtcctccgaaatcctaagtagagaggtgaattggatttctgtgctttggagcaaaacttgtaagcagctaggatttggaccagctctgtataacctttcgtattcgggaatttggctaggcagaacaccacctttgattgctgtaagacttgatataagattttgatgttctggtatgctatatactgttgtcttcttcacaaacttattgtagacgttggagttttaacgttcttgttgtgtatgttgaatcctatgaccagctaatatgtacggtaaatgtcttgcattaactccaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="94106" stop="91664"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93806" g_stop="93769" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93768" i_stop="93510" i_length="259">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.963" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93509" g_stop="93405" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="143" r_length="105" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93404" i_stop="93211" i_length="194">
            <donor d_prob="0.639" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93210" g_stop="93090" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="264" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93089" i_stop="92243" i_length="847">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92242" g_stop="91959" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="548" r_length="284" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E280282" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280282" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93806" e_stop="93769"/>
          <exon e_start="93509" e_stop="93405"/>
          <exon e_start="93210" e_stop="93090"/>
          <exon e_start="92242" e_stop="91959"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTGTCCTCATGATGAGTGTTAAGAATAACACACAGGTATCTAATATCTTTAGCACCTACAACTGTGTCTTTCTTCATGTCGTGTTTATTTATCAATTTTAATTGTTAAAAAGAGAGATAAAATCTATCCTGGAGCCTTGTTTATGTTGACAATTTACTTTTTAAAGTCATGCCGGTATACTTCCTCATTAATCTTAGATTTAAATACTATAGAAAAAGATGCAAGCTTCGGTTTTGTATGTGGAAGGCATCAGCTTTGTGCTTGTTATTTTACAGATATTTTTTCTGGATCTAGGTGCTCATCAACTGTAGGAACAACAGGAAACTTTTTGGTCGTGTGAGAGCATTTGATTGTCACTGCAATATGGTGCTTGAAAATGTTAGAGAAATGTGGACTGAGGTTTGTTTGTTCTTGACTTAATCAACTTTTTGGGACAATGTGTATTGTGTCTTGGATCTGTATCTTGCGTCAAAAAGCTCCAGTTACCAAGATTGTTTATATTATTTTTCAGGTTCCTAAGGGCAATGTGTCTTGGATTTGAAACTTGTACAAAAAGACTCCACTTAACAAAGTTGTTTATGTTTATTCTTCAGGTGCCCAAGACTGGAAAAGGAAAAAAGAAAGCTGTTGCTGTTAACAAAGATAGGTTTATCAGCAAGATGTTCCTTCGGGGAGATTCTGTGATCATTGTCCTCCGAAATCCTAAGTAGAGAGGTACTGTTGGATCTTTGACATAGTGGTTGGAGTAATTTTCTTTGAATTATGAGCTAGTTCCTTTAATTGGTCCATGTTTGAAGTGCAATATCCTTTTAACTTGCTATTATGTAATCAAATGTTTGGTATATAAGAACTGTAAATGCTAAGTAATATTTGTTGAATCCATTATTGTGAAATTTATCAATTTATTATCATAAATAAAATTTGGAACTTCAAAAATGATTAACTCTTAGCATTTAAATAATTGTCTTTTCTGATGAACTATGAAGATCTATAATAAATGAAATATAACGTTCCTATAAATATCAGAAAAATGTGTATACATATGATAGGAAGCTCAAGGTTGGGATCAGGAAACAAACTAGTGGATTAAAATCTGCAAGTTCTATTCTCCAAGTTTAGCTAATGAAGTATGAAGACTGTAAAAATGGTACTGAAAGAACTAACCTCATGCTCGAAAAACTCTCCTGCTAGAGCAGTGCATGGGATTAGGAAGAGCATGAGAACATATATTGTTTTCACTGCTTCCCTTTTATCTCTTGTTGAGCAAAAGATCTATCGGTAACATCATCTCTTACCTTACAAGGTAGGGGAAAGTTTTGTGTACACGTTACCCTCCTCACCAAACCCCACTTGTTGGGATTCATTCTGGGGTTTGTTGTTTTTGGACATATTTCTGTCTGCATACAAAAATGTTCCATTTCGTCTTCTTTTTTCTACTTGAAATGCATTTCTGTGTGGTTATGCACATTCTTAATTTTTCCCTTGGTGTTCCCACATTTTTGTTTGCCTGTATTTAATTATCTGATCGTTGGTAGTAATTCAATACACTTGTGTACTGCAGGTGAATTGGATTTCTGTGCTTTGGAGCAAAACTTGTAAGCAGCTAGGATTTGGACCAGCTCTGTATAACCTTTCGTATTCGGGAATTTGGCTAGGCAGAACACCACCTTTGATTGCTGTAAGACTTGATATAAGATTTTGATGTTCTGGTATGCTATATACTGTTGTCTTCTTCACAAACTTATTGTAGACGTTGGAGTTTTAACGTTCTTGTTGTGTATGTTGAATCCTATGACCAGCTAATATGTACGGTAAATGTCTTGCATTAACTCCAGATACATTGTC</genome_strand>
        <mrna_strand>TTTCTGTCCTCATGATGAGTGTTAAGAATAACACCGAG...................................................................................................................................................................................................................................................................GTGCTCATCAACTGTAGGACCAACAGGAAACTTCTTGGTCGTGTGAGAGCATTTGATCGTCACTGCAATATGGTGCTTGAAAATGTTAGAGAAATGTGGACTGAG..................................................................................................................................................................................................GTGCCCAAGACTGGAAAAGGAAAAAAGAAAGCTGTTGCTGTTAACAAAGATAGGTTTATCAGCAAGATGTTCCTTCGGGGAGATTCTGTGATCATTGTCCTCCGAAATCCTAAGTAGAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATTGGATTTCTGTGCTTTGGAGCAAAACTTGTAAGCAGCTAGGATTTGGACCAGCTCTGTATAACCTTTCGTATTCGGGAATTTGGCTAGGCAGAACACCACCTTTGATTGCTGTAAGACTTGATATAAGATTTTGATGTTCTGGTATGCTATATACTGTTGTCTTCTTCACAAACTTATTGTAGACGTTGGAGTTTTAACGTTCTTGTTGTGTATGTTGAATCCTATGACCAGCTAATATGTACGGTAAATGTCTTGCATTAACTCCAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E320099" ref_strand="+" ref_description="SGN-E320099 [cTOB-21-O14]">
      <seq>ctttgcccacttttttttgttgctcttcaatttcttctgcttgatcgaagatgagtcgaccaatggaagaggatgcccctcaagggaaaaatgaggaagaggagttcaatactgggccactttctgtcctcatgatgagtgttaagaataacacacaggtgctcatcaactgtaggaacaacaggaaacttcttggtcgtgtgagagcatttgatcgtcactgcaatatggtgcttgaaaatgttagagaaatgtggactgaggtgcccaagactggaaaaggaaaaaagaaagctgttgctgttaacaaagataggtttatcagcaagatgttccttcggggagattctgtgatcattgtcctccgaaatcctaagtagagaggtgaattggatttctgtgctttggagcaaaacttgtaagcagctaggatttggaccagctctgtataacctttcgtattcggggaattggctangcagaacacacctttgattgctgtaagacttgatataagattttgatgttctggtatgctatatactgttgtcttcttcacaaactattgtagacgtggnagtttaacngtcttgntgtgtatgntgaatcctatgaccagctaatatgtacgggtaatgtcttgcattaactccaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="96037" stop="91664"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95737" g_stop="95683" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95682" i_stop="94951" i_length="732">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94950" g_stop="94926" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="80" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94925" i_stop="93847" i_length="1079">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93846" g_stop="93769" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="158" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93768" i_stop="93510" i_length="259">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93509" g_stop="93405" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="263" r_length="105" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="93404" i_stop="93211" i_length="194">
            <donor d_prob="0.639" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93210" g_stop="93090" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="384" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="93089" i_stop="92243" i_length="847">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="92242" g_stop="91960" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="664" r_length="280" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E320099" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320099" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95737" e_stop="95683"/>
          <exon e_start="94950" e_stop="94926"/>
          <exon e_start="93846" e_stop="93769"/>
          <exon e_start="93509" e_stop="93405"/>
          <exon e_start="93210" e_stop="93090"/>
          <exon e_start="92242" e_stop="91960"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGCCCACTTTTTTTTGTTGCTCTTCAATTTCTTCTGCTTGATCGAAGATGAGGTAATGGTTTACTGCTATTTTACACTTTGCCTTTGTACATTTGAAGTTCTTCAATTTTCTCTGTTTGATTTTTTCTCGTCATTGCAGTAACCTATTTAGTAGATTATGTAATGTTATTGTTAATCAAAGAAGTAGATAATTTTCCCTAGGTAAAGTAAGTTATTGGACGAGGAGATGAGAAATTGAAGAATTTTAGCTGTTTTCTGGACTAATTTTGTGTAGTTTTTTTTTTTTTTGGGTATTGCGTGCTTTTGGAAGTTTAAATTAGAGTGAGTAGATTCATATAACTGAAGGCAACTAGCTTGGCGTGAAGGCCTGGAATGTTTCTTTTTTCGAGTTCTATATGCAGTTTAAACACTATGCTAATTGGGTTTCATGTAGCTAAACAATTGTAAAGTTGGATTTTCGAGTAATTCAGTCTTCTCTAGCCCTTTATTACTACTGATCTTAGTTCTTTTTGTTCACTCTCTACTATATCCAAGCTTAAAACCTATGTTATTCCGTGCACATCAGTAATAGAACCCTTATATTGTCTAGAATACTAGGATAACAAGGCTGTAAGATGTACAAATAGAATTAAGAAAAAACTAGGTCAGTGTCTCATGTTTTTGTTGTTCATTGCTGATGTATTTCTCTATTCCTGTTGATTTTAGTGTTACCCAAATATTAGTAAGTGGAAGTTTCTAATTGTTTTGCTTTTTCTTTTTCTTTTCTATTTGTGCTCTTTTGCAGTCGACCAATGGAAGAGGATGCCCCTGTAAGTTAGCTTACTTTGCTAGTATTTTGCCCTATACAAAGCTCTCATTGTTTATTTTTCTCATTTTTTCATTGGCATAATCTGTGTTGTGATCTATTTTGTGTTTTAGGGGCTGTCTACTGCTTAGTACTTGTTTTCATTTTCCTTTCTGTTCACCTCAATGCGATGCATTCAATTAGATTTCTTTTGTTGGTAGCCTTGATCCTGCTTTACACGTTACAACTGAAAAGTTTCTAGCATACATCTTTTATTTTATCATATGGAGAATATGTTTATACCTCCCTTTTCAAAGCAAGATCATTGAATTGTTTGATCTGTAGAATATTTTTCAGCACATAACATCAAGTCATTGAATTTTTTTTGGTTAAGTCGTTTGAGTTCACCACTCAAAACAAATGACAAAATCAATTAGAACTTTAAAATAACAATGTAGCTAGGATGAATTTTTCTGTAAAAACTAGAACCTATCAAGTGTAAAAATTATTAGTTGAATTAGTAGAATTTATTTTCTACAGTTGTTTTGTTCCCACCTTCACACAAGTGTTATGTCAGTTTTTCTCATTTACCACATTGGATAACCCAGAAGCTAGGTCCGAACTTTGTAGTTCTCCCTTAACAGACATCCTATTGACATTTTTCTTATATTCTTGGTATGTTTATTTATACATGTACTCTTGTTCATTTTCCATTTGAGTTGCTTCTTGTTTGCCTTCCCGATGCCTAAAGTGCTTAGGTCTAAACTTTGTAGTTCTCCTTTAACAGACATCCTATTGACATTTCGTCTTTTATTCTTGGTATGTTTATTTATACATGTACTCTTGTTGTTCATTTTCCATTTGTGTTGCTTCTTATCTGCCTTCCCGATGTCAAAGTGCTTTGCTTCAAAGTTATCTAGATTAAGCACATAGTGAAAGAGTGTATAATTGGTAGATTATCTAGCTTAAGTACATAGTGAAAAAGTGTATGCCCTTCTATGTTGGTGTGATAGAGGAATGAACCTTATCAGTCCCAGTGAATATGATTTGCTTATCAGATTTTGTGAAAGATGTCTTATGTTTGCCTATGGATCTTTTGTCTAGCAAGGGAAAAATGAGGAAGAGGAGTTCAATACTGGGCCACTTTCTGTCCTCATGATGAGTGTTAAGAATAACACACAGGTATCTAATATCTTTAGCACCTACAACTGTGTCTTTCTTCATGTCGTGTTTATTTATCAATTTTAATTGTTAAAAAGAGAGATAAAATCTATCCTGGAGCCTTGTTTATGTTGACAATTTACTTTTTAAAGTCATGCCGGTATACTTCCTCATTAATCTTAGATTTAAATACTATAGAAAAAGATGCAAGCTTCGGTTTTGTATGTGGAAGGCATCAGCTTTGTGCTTGTTATTTTACAGATATTTTTTCTGGATCTAGGTGCTCATCAACTGTAGGAACAACAGGAAACTTTTTGGTCGTGTGAGAGCATTTGATTGTCACTGCAATATGGTGCTTGAAAATGTTAGAGAAATGTGGACTGAGGTTTGTTTGTTCTTGACTTAATCAACTTTTTGGGACAATGTGTATTGTGTCTTGGATCTGTATCTTGCGTCAAAAAGCTCCAGTTACCAAGATTGTTTATATTATTTTTCAGGTTCCTAAGGGCAATGTGTCTTGGATTTGAAACTTGTACAAAAAGACTCCACTTAACAAAGTTGTTTATGTTTATTCTTCAGGTGCCCAAGACTGGAAAAGGAAAAAAGAAAGCTGTTGCTGTTAACAAAGATAGGTTTATCAGCAAGATGTTCCTTCGGGGAGATTCTGTGATCATTGTCCTCCGAAATCCTAAGTAGAGAGGTACTGTTGGATCTTTGACATAGTGGTTGGAGTAATTTTCTTTGAATTATGAGCTAGTTCCTTTAATTGGTCCATGTTTGAAGTGCAATATCCTTTTAACTTGCTATTATGTAATCAAATGTTTGGTATATAAGAACTGTAAATGCTAAGTAATATTTGTTGAATCCATTATTGTGAAATTTATCAATTTATTATCATAAATAAAATTTGGAACTTCAAAAATGATTAACTCTTAGCATTTAAATAATTGTCTTTTCTGATGAACTATGAAGATCTATAATAAATGAAATATAACGTTCCTATAAATATCAGAAAAATGTGTATACATATGATAGGAAGCTCAAGGTTGGGATCAGGAAACAAACTAGTGGATTAAAATCTGCAAGTTCTATTCTCCAAGTTTAGCTAATGAAGTATGAAGACTGTAAAAATGGTACTGAAAGAACTAACCTCATGCTCGAAAAACTCTCCTGCTAGAGCAGTGCATGGGATTAGGAAGAGCATGAGAACATATATTGTTTTCACTGCTTCCCTTTTATCTCTTGTTGAGCAAAAGATCTATCGGTAACATCATCTCTTACCTTACAAGGTAGGGGAAAGTTTTGTGTACACGTTACCCTCCTCACCAAACCCCACTTGTTGGGATTCATTCTGGGGTTTGTTGTTTTTGGACATATTTCTGTCTGCATACAAAAATGTTCCATTTCGTCTTCTTTTTTCTACTTGAAATGCATTTCTGTGTGGTTATGCACATTCTTAATTTTTCCCTTGGTGTTCCCACATTTTTGTTTGCCTGTATTTAATTATCTGATCGTTGGTAGTAATTCAATACACTTGTGTACTGCAGGTGAATTGGATTTCTGTGCTTTGGAGCAAAACTTGTAAGCAGCTAGGATTTGGACCAGCTCTGTATAACCTTTCGTATTCGGGAATTTGGCTAGGCAGAACACCACCTTTGATTGCTGTAAGACTTGATATAAGATTTTGATGTTCTGGTATGCTATATACTGTTGTCTTCTTCACAAACTTATTGTAGACGTTGGAGTTTTAACGTTCTTGTTGTGTATGTTGAATCCTATGACCAGCTAATATGTACGGTAAATGTCTTGCATTAACTCCAGATACATTGT</genome_strand>
        <mrna_strand>CTTTGCCCACTTTTTTTTGTTGCTCTTCAATTTCTTCTGCTTGATCGAAGATGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGACCAATGGAAGAGGATGCCCCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGGAAAAATGAGGAAGAGGAGTTCAATACTGGGCCACTTTCTGTCCTCATGATGAGTGTTAAGAATAACACACAG...................................................................................................................................................................................................................................................................GTGCTCATCAACTGTAGGAACAACAGGAAACTTCTTGGTCGTGTGAGAGCATTTGATCGTCACTGCAATATGGTGCTTGAAAATGTTAGAGAAATGTGGACTGAG..................................................................................................................................................................................................GTGCCCAAGACTGGAAAAGGAAAAAAGAAAGCTGTTGCTGTTAACAAAGATAGGTTTATCAGCAAGATGTTCCTTCGGGGAGATTCTGTGATCATTGTCCTCCGAAATCCTAAGTAGAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATTGGATTTCTGTGCTTTGGAGCAAAACTTGTAAGCAGCTAGGATTTGGACCAGCTCTGTATAACCTTTCGTATTCGGGGAATTGGCTANGCAGAACA-CACCTTTGATTGCTGTAAGACTTGATATAAGATTTTGATGTTCTGGTATGCTATATACTGTTGTCTTCTTCACAAAC-TATTGTAGACGTGGNAG-TTTAACNGTCTTGNTGTGTATGNTGAATCCTATGACCAGCTAATATGTACGGGTAATGTCTTGCATTAACTCCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E732750" ref_strand="+" ref_description="SGN-E732750 [LB03AB04]">
      <seq>gctcccttttctttgttgctcttcaattttttctgcttgatcgaagatgagtcgaccaatggaagaggatgcccctcaagggaaaaatgaggaagaggagttcaatactgggccactttctgtcctcatgatgagtgttaagaataacacacaggtgctcatcaactgtaggaacaacaggaaacttcttggtcgtgtgagagcatttgatcgtcactgcaatatggtgcttgaaaatgttagagaaatgtggactgaggtgcccaagactggaaaaggaaaaaagaaagctgttgctgttaacaaagataggtttatcagcaagatgttccttcggggagattctgtgatcattgtcctccgaaatcccaagtagagaggtgaattggatttctgtgctttggagcaaaacttgtaagcagctaggatttggaccagctctgtataacctttcgtattcgggaatttggctaggcagaacaccacctttgattgctgtaagacttgatataagattttgatgttctggtatgctatatactgttgtcttcttcacaaacttattgtagacgttggagtttaacgttctttttgtgtatgttgaatcctatgaccagctaatatgtacggtaaatgtcttgcattaactccaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="96033" stop="91664"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95733" g_stop="95683" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="0.922"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95682" i_stop="94951" i_length="732">
            <donor d_prob="0.950" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94950" g_stop="94926" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="76" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94925" i_stop="93847" i_length="1079">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93846" g_stop="93769" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="154" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93768" i_stop="93510" i_length="259">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93509" g_stop="93405" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="259" r_length="105" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="93404" i_stop="93211" i_length="194">
            <donor d_prob="0.639" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93210" g_stop="93090" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="380" r_length="121" r_score="0.992"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="93089" i_stop="92243" i_length="847">
            <donor d_prob="0.952" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="92242" g_stop="91960" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="662" r_length="282" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E732750" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732750" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95733" e_stop="95683"/>
          <exon e_start="94950" e_stop="94926"/>
          <exon e_start="93846" e_stop="93769"/>
          <exon e_start="93509" e_stop="93405"/>
          <exon e_start="93210" e_stop="93090"/>
          <exon e_start="92242" e_stop="91960"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCCACTTTTTTTTGTTGCTCTTCAATTTCTTCTGCTTGATCGAAGATGAGGTAATGGTTTACTGCTATTTTACACTTTGCCTTTGTACATTTGAAGTTCTTCAATTTTCTCTGTTTGATTTTTTCTCGTCATTGCAGTAACCTATTTAGTAGATTATGTAATGTTATTGTTAATCAAAGAAGTAGATAATTTTCCCTAGGTAAAGTAAGTTATTGGACGAGGAGATGAGAAATTGAAGAATTTTAGCTGTTTTCTGGACTAATTTTGTGTAGTTTTTTTTTTTTTTGGGTATTGCGTGCTTTTGGAAGTTTAAATTAGAGTGAGTAGATTCATATAACTGAAGGCAACTAGCTTGGCGTGAAGGCCTGGAATGTTTCTTTTTTCGAGTTCTATATGCAGTTTAAACACTATGCTAATTGGGTTTCATGTAGCTAAACAATTGTAAAGTTGGATTTTCGAGTAATTCAGTCTTCTCTAGCCCTTTATTACTACTGATCTTAGTTCTTTTTGTTCACTCTCTACTATATCCAAGCTTAAAACCTATGTTATTCCGTGCACATCAGTAATAGAACCCTTATATTGTCTAGAATACTAGGATAACAAGGCTGTAAGATGTACAAATAGAATTAAGAAAAAACTAGGTCAGTGTCTCATGTTTTTGTTGTTCATTGCTGATGTATTTCTCTATTCCTGTTGATTTTAGTGTTACCCAAATATTAGTAAGTGGAAGTTTCTAATTGTTTTGCTTTTTCTTTTTCTTTTCTATTTGTGCTCTTTTGCAGTCGACCAATGGAAGAGGATGCCCCTGTAAGTTAGCTTACTTTGCTAGTATTTTGCCCTATACAAAGCTCTCATTGTTTATTTTTCTCATTTTTTCATTGGCATAATCTGTGTTGTGATCTATTTTGTGTTTTAGGGGCTGTCTACTGCTTAGTACTTGTTTTCATTTTCCTTTCTGTTCACCTCAATGCGATGCATTCAATTAGATTTCTTTTGTTGGTAGCCTTGATCCTGCTTTACACGTTACAACTGAAAAGTTTCTAGCATACATCTTTTATTTTATCATATGGAGAATATGTTTATACCTCCCTTTTCAAAGCAAGATCATTGAATTGTTTGATCTGTAGAATATTTTTCAGCACATAACATCAAGTCATTGAATTTTTTTTGGTTAAGTCGTTTGAGTTCACCACTCAAAACAAATGACAAAATCAATTAGAACTTTAAAATAACAATGTAGCTAGGATGAATTTTTCTGTAAAAACTAGAACCTATCAAGTGTAAAAATTATTAGTTGAATTAGTAGAATTTATTTTCTACAGTTGTTTTGTTCCCACCTTCACACAAGTGTTATGTCAGTTTTTCTCATTTACCACATTGGATAACCCAGAAGCTAGGTCCGAACTTTGTAGTTCTCCCTTAACAGACATCCTATTGACATTTTTCTTATATTCTTGGTATGTTTATTTATACATGTACTCTTGTTCATTTTCCATTTGAGTTGCTTCTTGTTTGCCTTCCCGATGCCTAAAGTGCTTAGGTCTAAACTTTGTAGTTCTCCTTTAACAGACATCCTATTGACATTTCGTCTTTTATTCTTGGTATGTTTATTTATACATGTACTCTTGTTGTTCATTTTCCATTTGTGTTGCTTCTTATCTGCCTTCCCGATGTCAAAGTGCTTTGCTTCAAAGTTATCTAGATTAAGCACATAGTGAAAGAGTGTATAATTGGTAGATTATCTAGCTTAAGTACATAGTGAAAAAGTGTATGCCCTTCTATGTTGGTGTGATAGAGGAATGAACCTTATCAGTCCCAGTGAATATGATTTGCTTATCAGATTTTGTGAAAGATGTCTTATGTTTGCCTATGGATCTTTTGTCTAGCAAGGGAAAAATGAGGAAGAGGAGTTCAATACTGGGCCACTTTCTGTCCTCATGATGAGTGTTAAGAATAACACACAGGTATCTAATATCTTTAGCACCTACAACTGTGTCTTTCTTCATGTCGTGTTTATTTATCAATTTTAATTGTTAAAAAGAGAGATAAAATCTATCCTGGAGCCTTGTTTATGTTGACAATTTACTTTTTAAAGTCATGCCGGTATACTTCCTCATTAATCTTAGATTTAAATACTATAGAAAAAGATGCAAGCTTCGGTTTTGTATGTGGAAGGCATCAGCTTTGTGCTTGTTATTTTACAGATATTTTTTCTGGATCTAGGTGCTCATCAACTGTAGGAACAACAGGAAACTTTTTGGTCGTGTGAGAGCATTTGATTGTCACTGCAATATGGTGCTTGAAAATGTTAGAGAAATGTGGACTGAGGTTTGTTTGTTCTTGACTTAATCAACTTTTTGGGACAATGTGTATTGTGTCTTGGATCTGTATCTTGCGTCAAAAAGCTCCAGTTACCAAGATTGTTTATATTATTTTTCAGGTTCCTAAGGGCAATGTGTCTTGGATTTGAAACTTGTACAAAAAGACTCCACTTAACAAAGTTGTTTATGTTTATTCTTCAGGTGCCCAAGACTGGAAAAGGAAAAAAGAAAGCTGTTGCTGTTAACAAAGATAGGTTTATCAGCAAGATGTTCCTTCGGGGAGATTCTGTGATCATTGTCCTCCGAAATCCTAAGTAGAGAGGTACTGTTGGATCTTTGACATAGTGGTTGGAGTAATTTTCTTTGAATTATGAGCTAGTTCCTTTAATTGGTCCATGTTTGAAGTGCAATATCCTTTTAACTTGCTATTATGTAATCAAATGTTTGGTATATAAGAACTGTAAATGCTAAGTAATATTTGTTGAATCCATTATTGTGAAATTTATCAATTTATTATCATAAATAAAATTTGGAACTTCAAAAATGATTAACTCTTAGCATTTAAATAATTGTCTTTTCTGATGAACTATGAAGATCTATAATAAATGAAATATAACGTTCCTATAAATATCAGAAAAATGTGTATACATATGATAGGAAGCTCAAGGTTGGGATCAGGAAACAAACTAGTGGATTAAAATCTGCAAGTTCTATTCTCCAAGTTTAGCTAATGAAGTATGAAGACTGTAAAAATGGTACTGAAAGAACTAACCTCATGCTCGAAAAACTCTCCTGCTAGAGCAGTGCATGGGATTAGGAAGAGCATGAGAACATATATTGTTTTCACTGCTTCCCTTTTATCTCTTGTTGAGCAAAAGATCTATCGGTAACATCATCTCTTACCTTACAAGGTAGGGGAAAGTTTTGTGTACACGTTACCCTCCTCACCAAACCCCACTTGTTGGGATTCATTCTGGGGTTTGTTGTTTTTGGACATATTTCTGTCTGCATACAAAAATGTTCCATTTCGTCTTCTTTTTTCTACTTGAAATGCATTTCTGTGTGGTTATGCACATTCTTAATTTTTCCCTTGGTGTTCCCACATTTTTGTTTGCCTGTATTTAATTATCTGATCGTTGGTAGTAATTCAATACACTTGTGTACTGCAGGTGAATTGGATTTCTGTGCTTTGGAGCAAAACTTGTAAGCAGCTAGGATTTGGACCAGCTCTGTATAACCTTTCGTATTCGGGAATTTGGCTAGGCAGAACACCACCTTTGATTGCTGTAAGACTTGATATAAGATTTTGATGTTCTGGTATGCTATATACTGTTGTCTTCTTCACAAACTTATTGTAGACGTTGGAGTTTTAACGTTCTTGTTGTGTATGTTGAATCCTATGACCAGCTAATATGTACGGTAAATGTCTTGCATTAACTCCAGATACATTGT</genome_strand>
        <mrna_strand>GCTCCCTTTTCTTTGTTGCTCTTCAATTTTTTCTGCTTGATCGAAGATGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGACCAATGGAAGAGGATGCCCCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGGAAAAATGAGGAAGAGGAGTTCAATACTGGGCCACTTTCTGTCCTCATGATGAGTGTTAAGAATAACACACAG...................................................................................................................................................................................................................................................................GTGCTCATCAACTGTAGGAACAACAGGAAACTTCTTGGTCGTGTGAGAGCATTTGATCGTCACTGCAATATGGTGCTTGAAAATGTTAGAGAAATGTGGACTGAG..................................................................................................................................................................................................GTGCCCAAGACTGGAAAAGGAAAAAAGAAAGCTGTTGCTGTTAACAAAGATAGGTTTATCAGCAAGATGTTCCTTCGGGGAGATTCTGTGATCATTGTCCTCCGAAATCCCAAGTAGAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATTGGATTTCTGTGCTTTGGAGCAAAACTTGTAAGCAGCTAGGATTTGGACCAGCTCTGTATAACCTTTCGTATTCGGGAATTTGGCTAGGCAGAACACCACCTTTGATTGCTGTAAGACTTGATATAAGATTTTGATGTTCTGGTATGCTATATACTGTTGTCTTCTTCACAAACTTATTGTAGACGTTGGAG-TTTAACGTTCTTTTTGTGTATGTTGAATCCTATGACCAGCTAATATGTACGGTAAATGTCTTGCATTAACTCCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E339269" ref_strand="+" ref_description="SGN-E339269 [cTOF-4-O6]">
      <seq>gagaactagtctcggtttttcttttttttgttgctcttcaatttcttctgcttgatcgaagatgagtcgaccaatggaagaggatgcccctcaagggaaaaatgaggaagaggagttcaatactgggccactttctgtcctcatgatgagtgttaagaataacacacaggtgctcatcaactgtaggaacaacaggaaacttcttggtcgtgtgagagcatttgatcgtcactgcaatatggtgcttgaaaatgttagagaaatgtggactgaggtgcccaagactggaaaaggaaaaaagaaagctgttgctgttaacaaagataggtttatcagcaagatgttccttcggggagattctgtgatcattgtcctccgaaatcctaagtagagaggtgaattggatttctgtgctttggagcaaaacttgtaagcagctacgatttggaccagctctgtataacctttcgtattcgggaatttggctaggcagaacaccacctttgattgctgtaagacttgatataagattttgatgttctggtatgctatatactgatgtcttcttcacaaacttattgtagacgttggagttttaacgttcttgttgcgtatgtagaatcctatgaccagctaatatgtacggtaaatgtctagcattaactccagatacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="96028" stop="91662"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95727" g_stop="95683" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="66" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95682" i_stop="94951" i_length="732">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94950" g_stop="94926" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="91" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94925" i_stop="93847" i_length="1079">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93846" g_stop="93769" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="169" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93768" i_stop="93510" i_length="259">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93509" g_stop="93405" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="274" r_length="105" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="93404" i_stop="93211" i_length="194">
            <donor d_prob="0.639" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93210" g_stop="93090" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="395" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="93089" i_stop="92243" i_length="847">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="92242" g_stop="91962" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="676" r_length="281" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E339269" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339269" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95727" e_stop="95683"/>
          <exon e_start="94950" e_stop="94926"/>
          <exon e_start="93846" e_stop="93769"/>
          <exon e_start="93509" e_stop="93405"/>
          <exon e_start="93210" e_stop="93090"/>
          <exon e_start="92242" e_stop="91962"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTGTTGCTCTTCAATTTCTTCTGCTTGATCGAAGATGAGGTAATGGTTTACTGCTATTTTACACTTTGCCTTTGTACATTTGAAGTTCTTCAATTTTCTCTGTTTGATTTTTTCTCGTCATTGCAGTAACCTATTTAGTAGATTATGTAATGTTATTGTTAATCAAAGAAGTAGATAATTTTCCCTAGGTAAAGTAAGTTATTGGACGAGGAGATGAGAAATTGAAGAATTTTAGCTGTTTTCTGGACTAATTTTGTGTAGTTTTTTTTTTTTTTGGGTATTGCGTGCTTTTGGAAGTTTAAATTAGAGTGAGTAGATTCATATAACTGAAGGCAACTAGCTTGGCGTGAAGGCCTGGAATGTTTCTTTTTTCGAGTTCTATATGCAGTTTAAACACTATGCTAATTGGGTTTCATGTAGCTAAACAATTGTAAAGTTGGATTTTCGAGTAATTCAGTCTTCTCTAGCCCTTTATTACTACTGATCTTAGTTCTTTTTGTTCACTCTCTACTATATCCAAGCTTAAAACCTATGTTATTCCGTGCACATCAGTAATAGAACCCTTATATTGTCTAGAATACTAGGATAACAAGGCTGTAAGATGTACAAATAGAATTAAGAAAAAACTAGGTCAGTGTCTCATGTTTTTGTTGTTCATTGCTGATGTATTTCTCTATTCCTGTTGATTTTAGTGTTACCCAAATATTAGTAAGTGGAAGTTTCTAATTGTTTTGCTTTTTCTTTTTCTTTTCTATTTGTGCTCTTTTGCAGTCGACCAATGGAAGAGGATGCCCCTGTAAGTTAGCTTACTTTGCTAGTATTTTGCCCTATACAAAGCTCTCATTGTTTATTTTTCTCATTTTTTCATTGGCATAATCTGTGTTGTGATCTATTTTGTGTTTTAGGGGCTGTCTACTGCTTAGTACTTGTTTTCATTTTCCTTTCTGTTCACCTCAATGCGATGCATTCAATTAGATTTCTTTTGTTGGTAGCCTTGATCCTGCTTTACACGTTACAACTGAAAAGTTTCTAGCATACATCTTTTATTTTATCATATGGAGAATATGTTTATACCTCCCTTTTCAAAGCAAGATCATTGAATTGTTTGATCTGTAGAATATTTTTCAGCACATAACATCAAGTCATTGAATTTTTTTTGGTTAAGTCGTTTGAGTTCACCACTCAAAACAAATGACAAAATCAATTAGAACTTTAAAATAACAATGTAGCTAGGATGAATTTTTCTGTAAAAACTAGAACCTATCAAGTGTAAAAATTATTAGTTGAATTAGTAGAATTTATTTTCTACAGTTGTTTTGTTCCCACCTTCACACAAGTGTTATGTCAGTTTTTCTCATTTACCACATTGGATAACCCAGAAGCTAGGTCCGAACTTTGTAGTTCTCCCTTAACAGACATCCTATTGACATTTTTCTTATATTCTTGGTATGTTTATTTATACATGTACTCTTGTTCATTTTCCATTTGAGTTGCTTCTTGTTTGCCTTCCCGATGCCTAAAGTGCTTAGGTCTAAACTTTGTAGTTCTCCTTTAACAGACATCCTATTGACATTTCGTCTTTTATTCTTGGTATGTTTATTTATACATGTACTCTTGTTGTTCATTTTCCATTTGTGTTGCTTCTTATCTGCCTTCCCGATGTCAAAGTGCTTTGCTTCAAAGTTATCTAGATTAAGCACATAGTGAAAGAGTGTATAATTGGTAGATTATCTAGCTTAAGTACATAGTGAAAAAGTGTATGCCCTTCTATGTTGGTGTGATAGAGGAATGAACCTTATCAGTCCCAGTGAATATGATTTGCTTATCAGATTTTGTGAAAGATGTCTTATGTTTGCCTATGGATCTTTTGTCTAGCAAGGGAAAAATGAGGAAGAGGAGTTCAATACTGGGCCACTTTCTGTCCTCATGATGAGTGTTAAGAATAACACACAGGTATCTAATATCTTTAGCACCTACAACTGTGTCTTTCTTCATGTCGTGTTTATTTATCAATTTTAATTGTTAAAAAGAGAGATAAAATCTATCCTGGAGCCTTGTTTATGTTGACAATTTACTTTTTAAAGTCATGCCGGTATACTTCCTCATTAATCTTAGATTTAAATACTATAGAAAAAGATGCAAGCTTCGGTTTTGTATGTGGAAGGCATCAGCTTTGTGCTTGTTATTTTACAGATATTTTTTCTGGATCTAGGTGCTCATCAACTGTAGGAACAACAGGAAACTTTTTGGTCGTGTGAGAGCATTTGATTGTCACTGCAATATGGTGCTTGAAAATGTTAGAGAAATGTGGACTGAGGTTTGTTTGTTCTTGACTTAATCAACTTTTTGGGACAATGTGTATTGTGTCTTGGATCTGTATCTTGCGTCAAAAAGCTCCAGTTACCAAGATTGTTTATATTATTTTTCAGGTTCCTAAGGGCAATGTGTCTTGGATTTGAAACTTGTACAAAAAGACTCCACTTAACAAAGTTGTTTATGTTTATTCTTCAGGTGCCCAAGACTGGAAAAGGAAAAAAGAAAGCTGTTGCTGTTAACAAAGATAGGTTTATCAGCAAGATGTTCCTTCGGGGAGATTCTGTGATCATTGTCCTCCGAAATCCTAAGTAGAGAGGTACTGTTGGATCTTTGACATAGTGGTTGGAGTAATTTTCTTTGAATTATGAGCTAGTTCCTTTAATTGGTCCATGTTTGAAGTGCAATATCCTTTTAACTTGCTATTATGTAATCAAATGTTTGGTATATAAGAACTGTAAATGCTAAGTAATATTTGTTGAATCCATTATTGTGAAATTTATCAATTTATTATCATAAATAAAATTTGGAACTTCAAAAATGATTAACTCTTAGCATTTAAATAATTGTCTTTTCTGATGAACTATGAAGATCTATAATAAATGAAATATAACGTTCCTATAAATATCAGAAAAATGTGTATACATATGATAGGAAGCTCAAGGTTGGGATCAGGAAACAAACTAGTGGATTAAAATCTGCAAGTTCTATTCTCCAAGTTTAGCTAATGAAGTATGAAGACTGTAAAAATGGTACTGAAAGAACTAACCTCATGCTCGAAAAACTCTCCTGCTAGAGCAGTGCATGGGATTAGGAAGAGCATGAGAACATATATTGTTTTCACTGCTTCCCTTTTATCTCTTGTTGAGCAAAAGATCTATCGGTAACATCATCTCTTACCTTACAAGGTAGGGGAAAGTTTTGTGTACACGTTACCCTCCTCACCAAACCCCACTTGTTGGGATTCATTCTGGGGTTTGTTGTTTTTGGACATATTTCTGTCTGCATACAAAAATGTTCCATTTCGTCTTCTTTTTTCTACTTGAAATGCATTTCTGTGTGGTTATGCACATTCTTAATTTTTCCCTTGGTGTTCCCACATTTTTGTTTGCCTGTATTTAATTATCTGATCGTTGGTAGTAATTCAATACACTTGTGTACTGCAGGTGAATTGGATTTCTGTGCTTTGGAGCAAAACTTGTAAGCAGCTAGGATTTGGACCAGCTCTGTATAACCTTTCGTATTCGGGAATTTGGCTAGGCAGAACACCACCTTTGATTGCTGTAAGACTTGATATAAGATTTTGATGTTCTGGTATGCTATATACTGTTGTCTTCTTCACAAACTTATTGTAGACGTTGGAGTTTTAACGTTCTTGTTGTGTATGTTGAATCCTATGACCAGCTAATATGTACGGTAAATGTCTTGCATTAACTCCAGATACATT</genome_strand>
        <mrna_strand>TTTTTTTTGTTGCTCTTCAATTTCTTCTGCTTGATCGAAGATGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGACCAATGGAAGAGGATGCCCCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGGAAAAATGAGGAAGAGGAGTTCAATACTGGGCCACTTTCTGTCCTCATGATGAGTGTTAAGAATAACACACAG...................................................................................................................................................................................................................................................................GTGCTCATCAACTGTAGGAACAACAGGAAACTTCTTGGTCGTGTGAGAGCATTTGATCGTCACTGCAATATGGTGCTTGAAAATGTTAGAGAAATGTGGACTGAG..................................................................................................................................................................................................GTGCCCAAGACTGGAAAAGGAAAAAAGAAAGCTGTTGCTGTTAACAAAGATAGGTTTATCAGCAAGATGTTCCTTCGGGGAGATTCTGTGATCATTGTCCTCCGAAATCCTAAGTAGAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATTGGATTTCTGTGCTTTGGAGCAAAACTTGTAAGCAGCTACGATTTGGACCAGCTCTGTATAACCTTTCGTATTCGGGAATTTGGCTAGGCAGAACACCACCTTTGATTGCTGTAAGACTTGATATAAGATTTTGATGTTCTGGTATGCTATATACTGATGTCTTCTTCACAAACTTATTGTAGACGTTGGAGTTTTAACGTTCTTGTTGCGTATGTAGAATCCTATGACCAGCTAATATGTACGGTAAATGTCTAGCATTAACTCCAGATACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E341901" ref_strand="+" ref_description="SGN-E341901 [cTOF-9-O17]">
      <seq>gctcttcaatttcttctgcttgatcgaagatgaagtcgaccaatggaagaggatgcccctcaagggaaaaatgaggaagaggagttcaatactgggccactttctgtcctcatgatgagtgttaagaataacacacaggtgctcatcaactgtaggaacaacaggaaacttcttggtcgtgtgagagcatttgatcgtcactgcaatatggtgcttgaaaatgttagagaaatgtggactgaggtgcccaagactggaaaaggaaaaaagaaagctgttgctgttaacaaagataggtttatcagcaagatgttccttcggggagattctgtgatcattgtcctccgaaatcctaagtagagaggtgaattggatttctgtgctttggagcaaaacttgtaagcagctaggatttggaccagctctgtataacctttcgtattcgggaatttggctaggcagaacaccacctttgattgctgtaagacttgatataagattttgatgttctggtatgctatatactgttgtcttcttacaaacttattgtagacgttggagttttaacgttcttgttgtgtatgttgaaatctatgaccagctaatatgtacggtaaatgtcttgcattaactccaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="96016" stop="91664"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95716" g_stop="95683" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95682" i_stop="94951" i_length="732">
            <donor d_prob="0.950" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94950" g_stop="94926" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="60" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94925" i_stop="93847" i_length="1079">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93846" g_stop="93769" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="138" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93768" i_stop="93510" i_length="259">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93509" g_stop="93405" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="243" r_length="105" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="93404" i_stop="93211" i_length="194">
            <donor d_prob="0.639" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93210" g_stop="93090" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="364" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="93089" i_stop="92243" i_length="847">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="92242" g_stop="91962" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="644" r_length="280" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E341901" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341901" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95716" e_stop="95683"/>
          <exon e_start="94950" e_stop="94926"/>
          <exon e_start="93846" e_stop="93769"/>
          <exon e_start="93509" e_stop="93405"/>
          <exon e_start="93210" e_stop="93090"/>
          <exon e_start="92242" e_stop="91962"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCTTCAATTTCTTCTGCTTGATCGAAGATG-AGGTAATGGTTTACTGCTATTTTACACTTTGCCTTTGTACATTTGAAGTTCTTCAATTTTCTCTGTTTGATTTTTTCTCGTCATTGCAGTAACCTATTTAGTAGATTATGTAATGTTATTGTTAATCAAAGAAGTAGATAATTTTCCCTAGGTAAAGTAAGTTATTGGACGAGGAGATGAGAAATTGAAGAATTTTAGCTGTTTTCTGGACTAATTTTGTGTAGTTTTTTTTTTTTTTGGGTATTGCGTGCTTTTGGAAGTTTAAATTAGAGTGAGTAGATTCATATAACTGAAGGCAACTAGCTTGGCGTGAAGGCCTGGAATGTTTCTTTTTTCGAGTTCTATATGCAGTTTAAACACTATGCTAATTGGGTTTCATGTAGCTAAACAATTGTAAAGTTGGATTTTCGAGTAATTCAGTCTTCTCTAGCCCTTTATTACTACTGATCTTAGTTCTTTTTGTTCACTCTCTACTATATCCAAGCTTAAAACCTATGTTATTCCGTGCACATCAGTAATAGAACCCTTATATTGTCTAGAATACTAGGATAACAAGGCTGTAAGATGTACAAATAGAATTAAGAAAAAACTAGGTCAGTGTCTCATGTTTTTGTTGTTCATTGCTGATGTATTTCTCTATTCCTGTTGATTTTAGTGTTACCCAAATATTAGTAAGTGGAAGTTTCTAATTGTTTTGCTTTTTCTTTTTCTTTTCTATTTGTGCTCTTTTGCAGTCGACCAATGGAAGAGGATGCCCCTGTAAGTTAGCTTACTTTGCTAGTATTTTGCCCTATACAAAGCTCTCATTGTTTATTTTTCTCATTTTTTCATTGGCATAATCTGTGTTGTGATCTATTTTGTGTTTTAGGGGCTGTCTACTGCTTAGTACTTGTTTTCATTTTCCTTTCTGTTCACCTCAATGCGATGCATTCAATTAGATTTCTTTTGTTGGTAGCCTTGATCCTGCTTTACACGTTACAACTGAAAAGTTTCTAGCATACATCTTTTATTTTATCATATGGAGAATATGTTTATACCTCCCTTTTCAAAGCAAGATCATTGAATTGTTTGATCTGTAGAATATTTTTCAGCACATAACATCAAGTCATTGAATTTTTTTTGGTTAAGTCGTTTGAGTTCACCACTCAAAACAAATGACAAAATCAATTAGAACTTTAAAATAACAATGTAGCTAGGATGAATTTTTCTGTAAAAACTAGAACCTATCAAGTGTAAAAATTATTAGTTGAATTAGTAGAATTTATTTTCTACAGTTGTTTTGTTCCCACCTTCACACAAGTGTTATGTCAGTTTTTCTCATTTACCACATTGGATAACCCAGAAGCTAGGTCCGAACTTTGTAGTTCTCCCTTAACAGACATCCTATTGACATTTTTCTTATATTCTTGGTATGTTTATTTATACATGTACTCTTGTTCATTTTCCATTTGAGTTGCTTCTTGTTTGCCTTCCCGATGCCTAAAGTGCTTAGGTCTAAACTTTGTAGTTCTCCTTTAACAGACATCCTATTGACATTTCGTCTTTTATTCTTGGTATGTTTATTTATACATGTACTCTTGTTGTTCATTTTCCATTTGTGTTGCTTCTTATCTGCCTTCCCGATGTCAAAGTGCTTTGCTTCAAAGTTATCTAGATTAAGCACATAGTGAAAGAGTGTATAATTGGTAGATTATCTAGCTTAAGTACATAGTGAAAAAGTGTATGCCCTTCTATGTTGGTGTGATAGAGGAATGAACCTTATCAGTCCCAGTGAATATGATTTGCTTATCAGATTTTGTGAAAGATGTCTTATGTTTGCCTATGGATCTTTTGTCTAGCAAGGGAAAAATGAGGAAGAGGAGTTCAATACTGGGCCACTTTCTGTCCTCATGATGAGTGTTAAGAATAACACACAGGTATCTAATATCTTTAGCACCTACAACTGTGTCTTTCTTCATGTCGTGTTTATTTATCAATTTTAATTGTTAAAAAGAGAGATAAAATCTATCCTGGAGCCTTGTTTATGTTGACAATTTACTTTTTAAAGTCATGCCGGTATACTTCCTCATTAATCTTAGATTTAAATACTATAGAAAAAGATGCAAGCTTCGGTTTTGTATGTGGAAGGCATCAGCTTTGTGCTTGTTATTTTACAGATATTTTTTCTGGATCTAGGTGCTCATCAACTGTAGGAACAACAGGAAACTTTTTGGTCGTGTGAGAGCATTTGATTGTCACTGCAATATGGTGCTTGAAAATGTTAGAGAAATGTGGACTGAGGTTTGTTTGTTCTTGACTTAATCAACTTTTTGGGACAATGTGTATTGTGTCTTGGATCTGTATCTTGCGTCAAAAAGCTCCAGTTACCAAGATTGTTTATATTATTTTTCAGGTTCCTAAGGGCAATGTGTCTTGGATTTGAAACTTGTACAAAAAGACTCCACTTAACAAAGTTGTTTATGTTTATTCTTCAGGTGCCCAAGACTGGAAAAGGAAAAAAGAAAGCTGTTGCTGTTAACAAAGATAGGTTTATCAGCAAGATGTTCCTTCGGGGAGATTCTGTGATCATTGTCCTCCGAAATCCTAAGTAGAGAGGTACTGTTGGATCTTTGACATAGTGGTTGGAGTAATTTTCTTTGAATTATGAGCTAGTTCCTTTAATTGGTCCATGTTTGAAGTGCAATATCCTTTTAACTTGCTATTATGTAATCAAATGTTTGGTATATAAGAACTGTAAATGCTAAGTAATATTTGTTGAATCCATTATTGTGAAATTTATCAATTTATTATCATAAATAAAATTTGGAACTTCAAAAATGATTAACTCTTAGCATTTAAATAATTGTCTTTTCTGATGAACTATGAAGATCTATAATAAATGAAATATAACGTTCCTATAAATATCAGAAAAATGTGTATACATATGATAGGAAGCTCAAGGTTGGGATCAGGAAACAAACTAGTGGATTAAAATCTGCAAGTTCTATTCTCCAAGTTTAGCTAATGAAGTATGAAGACTGTAAAAATGGTACTGAAAGAACTAACCTCATGCTCGAAAAACTCTCCTGCTAGAGCAGTGCATGGGATTAGGAAGAGCATGAGAACATATATTGTTTTCACTGCTTCCCTTTTATCTCTTGTTGAGCAAAAGATCTATCGGTAACATCATCTCTTACCTTACAAGGTAGGGGAAAGTTTTGTGTACACGTTACCCTCCTCACCAAACCCCACTTGTTGGGATTCATTCTGGGGTTTGTTGTTTTTGGACATATTTCTGTCTGCATACAAAAATGTTCCATTTCGTCTTCTTTTTTCTACTTGAAATGCATTTCTGTGTGGTTATGCACATTCTTAATTTTTCCCTTGGTGTTCCCACATTTTTGTTTGCCTGTATTTAATTATCTGATCGTTGGTAGTAATTCAATACACTTGTGTACTGCAGGTGAATTGGATTTCTGTGCTTTGGAGCAAAACTTGTAAGCAGCTAGGATTTGGACCAGCTCTGTATAACCTTTCGTATTCGGGAATTTGGCTAGGCAGAACACCACCTTTGATTGCTGTAAGACTTGATATAAGATTTTGATGTTCTGGTATGCTATATACTGTTGTCTTCTTCACAAACTTATTGTAGACGTTGGAGTTTTAACGTTCTTGTTGTGTATGTTGAATCCTATGACCAGCTAATATGTACGGTAAATGTCTTGCATTAACTCCAGATACATT</genome_strand>
        <mrna_strand>GCTCTTCAATTTCTTCTGCTTGATCGAAGATGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGACCAATGGAAGAGGATGCCCCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGGAAAAATGAGGAAGAGGAGTTCAATACTGGGCCACTTTCTGTCCTCATGATGAGTGTTAAGAATAACACACAG...................................................................................................................................................................................................................................................................GTGCTCATCAACTGTAGGAACAACAGGAAACTTCTTGGTCGTGTGAGAGCATTTGATCGTCACTGCAATATGGTGCTTGAAAATGTTAGAGAAATGTGGACTGAG..................................................................................................................................................................................................GTGCCCAAGACTGGAAAAGGAAAAAAGAAAGCTGTTGCTGTTAACAAAGATAGGTTTATCAGCAAGATGTTCCTTCGGGGAGATTCTGTGATCATTGTCCTCCGAAATCCTAAGTAGAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATTGGATTTCTGTGCTTTGGAGCAAAACTTGTAAGCAGCTAGGATTTGGACCAGCTCTGTATAACCTTTCGTATTCGGGAATTTGGCTAGGCAGAACACCACCTTTGATTGCTGTAAGACTTGATATAAGATTTTGATGTTCTGGTATGCTATATACTGTTGTCTTCTT-ACAAACTTATTGTAGACGTTGGAGTTTTAACGTTCTTGTTGTGTATGTTGAAATCTATGACCAGCTAATATGTACGGTAAATGTCTTGCATTAACTCCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E348851" ref_strand="+" ref_description="SGN-E348851 [cTOF-29-F8]">
      <seq>acttttttttgttgctcttcaatttcttctgcttgatcgaagatgagtcgaccaatggaagaggatgcccctcaagggaaaaatgaggaagaggagttcaatactgggccactttctgtcctcatgatgagtgttaagaataacacacaggtgctcatcaactgtaggaacaacaggaaacttcttggtcgtgtgagagcatttgatcgtcactgcaatatggtgcttgaaaatgttagagaaatgtggactgaggtgcccaagactggaaaaggaaaaaagaaagctgttgctgttaacaaagataggtttatcagcaagatgttccttcggggagattctgtgatcattgtcctccgaaatcctaagtagagaggtgaattggatttctgtgctttggagcaaaacttgtaagcagctaggatttggaccagctctgtataacctttcgtattcgggaatttggctaggcagaacaccacctttgattgctgtaagacttgatataagattttgatgttctggtatgcctatatactgttgtcttcttcacaaacttattgtagacgttggagttntaacgttcttgttgtgtatgttgaatcctatgaccagctaatatgtacggtaaatgtcttgcattaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="96029" stop="91675"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95729" g_stop="95683" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95682" i_stop="94951" i_length="732">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94950" g_stop="94926" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="72" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94925" i_stop="93847" i_length="1079">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93846" g_stop="93769" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="150" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93768" i_stop="93510" i_length="259">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93509" g_stop="93405" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="255" r_length="105" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="93404" i_stop="93211" i_length="194">
            <donor d_prob="0.639" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93210" g_stop="93090" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="376" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="93089" i_stop="92243" i_length="847">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="92242" g_stop="91963" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="657" r_length="281" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E348851" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348851" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95729" e_stop="95683"/>
          <exon e_start="94950" e_stop="94926"/>
          <exon e_start="93846" e_stop="93769"/>
          <exon e_start="93509" e_stop="93405"/>
          <exon e_start="93210" e_stop="93090"/>
          <exon e_start="92242" e_stop="91963"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTTTTTTTGTTGCTCTTCAATTTCTTCTGCTTGATCGAAGATGAGGTAATGGTTTACTGCTATTTTACACTTTGCCTTTGTACATTTGAAGTTCTTCAATTTTCTCTGTTTGATTTTTTCTCGTCATTGCAGTAACCTATTTAGTAGATTATGTAATGTTATTGTTAATCAAAGAAGTAGATAATTTTCCCTAGGTAAAGTAAGTTATTGGACGAGGAGATGAGAAATTGAAGAATTTTAGCTGTTTTCTGGACTAATTTTGTGTAGTTTTTTTTTTTTTTGGGTATTGCGTGCTTTTGGAAGTTTAAATTAGAGTGAGTAGATTCATATAACTGAAGGCAACTAGCTTGGCGTGAAGGCCTGGAATGTTTCTTTTTTCGAGTTCTATATGCAGTTTAAACACTATGCTAATTGGGTTTCATGTAGCTAAACAATTGTAAAGTTGGATTTTCGAGTAATTCAGTCTTCTCTAGCCCTTTATTACTACTGATCTTAGTTCTTTTTGTTCACTCTCTACTATATCCAAGCTTAAAACCTATGTTATTCCGTGCACATCAGTAATAGAACCCTTATATTGTCTAGAATACTAGGATAACAAGGCTGTAAGATGTACAAATAGAATTAAGAAAAAACTAGGTCAGTGTCTCATGTTTTTGTTGTTCATTGCTGATGTATTTCTCTATTCCTGTTGATTTTAGTGTTACCCAAATATTAGTAAGTGGAAGTTTCTAATTGTTTTGCTTTTTCTTTTTCTTTTCTATTTGTGCTCTTTTGCAGTCGACCAATGGAAGAGGATGCCCCTGTAAGTTAGCTTACTTTGCTAGTATTTTGCCCTATACAAAGCTCTCATTGTTTATTTTTCTCATTTTTTCATTGGCATAATCTGTGTTGTGATCTATTTTGTGTTTTAGGGGCTGTCTACTGCTTAGTACTTGTTTTCATTTTCCTTTCTGTTCACCTCAATGCGATGCATTCAATTAGATTTCTTTTGTTGGTAGCCTTGATCCTGCTTTACACGTTACAACTGAAAAGTTTCTAGCATACATCTTTTATTTTATCATATGGAGAATATGTTTATACCTCCCTTTTCAAAGCAAGATCATTGAATTGTTTGATCTGTAGAATATTTTTCAGCACATAACATCAAGTCATTGAATTTTTTTTGGTTAAGTCGTTTGAGTTCACCACTCAAAACAAATGACAAAATCAATTAGAACTTTAAAATAACAATGTAGCTAGGATGAATTTTTCTGTAAAAACTAGAACCTATCAAGTGTAAAAATTATTAGTTGAATTAGTAGAATTTATTTTCTACAGTTGTTTTGTTCCCACCTTCACACAAGTGTTATGTCAGTTTTTCTCATTTACCACATTGGATAACCCAGAAGCTAGGTCCGAACTTTGTAGTTCTCCCTTAACAGACATCCTATTGACATTTTTCTTATATTCTTGGTATGTTTATTTATACATGTACTCTTGTTCATTTTCCATTTGAGTTGCTTCTTGTTTGCCTTCCCGATGCCTAAAGTGCTTAGGTCTAAACTTTGTAGTTCTCCTTTAACAGACATCCTATTGACATTTCGTCTTTTATTCTTGGTATGTTTATTTATACATGTACTCTTGTTGTTCATTTTCCATTTGTGTTGCTTCTTATCTGCCTTCCCGATGTCAAAGTGCTTTGCTTCAAAGTTATCTAGATTAAGCACATAGTGAAAGAGTGTATAATTGGTAGATTATCTAGCTTAAGTACATAGTGAAAAAGTGTATGCCCTTCTATGTTGGTGTGATAGAGGAATGAACCTTATCAGTCCCAGTGAATATGATTTGCTTATCAGATTTTGTGAAAGATGTCTTATGTTTGCCTATGGATCTTTTGTCTAGCAAGGGAAAAATGAGGAAGAGGAGTTCAATACTGGGCCACTTTCTGTCCTCATGATGAGTGTTAAGAATAACACACAGGTATCTAATATCTTTAGCACCTACAACTGTGTCTTTCTTCATGTCGTGTTTATTTATCAATTTTAATTGTTAAAAAGAGAGATAAAATCTATCCTGGAGCCTTGTTTATGTTGACAATTTACTTTTTAAAGTCATGCCGGTATACTTCCTCATTAATCTTAGATTTAAATACTATAGAAAAAGATGCAAGCTTCGGTTTTGTATGTGGAAGGCATCAGCTTTGTGCTTGTTATTTTACAGATATTTTTTCTGGATCTAGGTGCTCATCAACTGTAGGAACAACAGGAAACTTTTTGGTCGTGTGAGAGCATTTGATTGTCACTGCAATATGGTGCTTGAAAATGTTAGAGAAATGTGGACTGAGGTTTGTTTGTTCTTGACTTAATCAACTTTTTGGGACAATGTGTATTGTGTCTTGGATCTGTATCTTGCGTCAAAAAGCTCCAGTTACCAAGATTGTTTATATTATTTTTCAGGTTCCTAAGGGCAATGTGTCTTGGATTTGAAACTTGTACAAAAAGACTCCACTTAACAAAGTTGTTTATGTTTATTCTTCAGGTGCCCAAGACTGGAAAAGGAAAAAAGAAAGCTGTTGCTGTTAACAAAGATAGGTTTATCAGCAAGATGTTCCTTCGGGGAGATTCTGTGATCATTGTCCTCCGAAATCCTAAGTAGAGAGGTACTGTTGGATCTTTGACATAGTGGTTGGAGTAATTTTCTTTGAATTATGAGCTAGTTCCTTTAATTGGTCCATGTTTGAAGTGCAATATCCTTTTAACTTGCTATTATGTAATCAAATGTTTGGTATATAAGAACTGTAAATGCTAAGTAATATTTGTTGAATCCATTATTGTGAAATTTATCAATTTATTATCATAAATAAAATTTGGAACTTCAAAAATGATTAACTCTTAGCATTTAAATAATTGTCTTTTCTGATGAACTATGAAGATCTATAATAAATGAAATATAACGTTCCTATAAATATCAGAAAAATGTGTATACATATGATAGGAAGCTCAAGGTTGGGATCAGGAAACAAACTAGTGGATTAAAATCTGCAAGTTCTATTCTCCAAGTTTAGCTAATGAAGTATGAAGACTGTAAAAATGGTACTGAAAGAACTAACCTCATGCTCGAAAAACTCTCCTGCTAGAGCAGTGCATGGGATTAGGAAGAGCATGAGAACATATATTGTTTTCACTGCTTCCCTTTTATCTCTTGTTGAGCAAAAGATCTATCGGTAACATCATCTCTTACCTTACAAGGTAGGGGAAAGTTTTGTGTACACGTTACCCTCCTCACCAAACCCCACTTGTTGGGATTCATTCTGGGGTTTGTTGTTTTTGGACATATTTCTGTCTGCATACAAAAATGTTCCATTTCGTCTTCTTTTTTCTACTTGAAATGCATTTCTGTGTGGTTATGCACATTCTTAATTTTTCCCTTGGTGTTCCCACATTTTTGTTTGCCTGTATTTAATTATCTGATCGTTGGTAGTAATTCAATACACTTGTGTACTGCAGGTGAATTGGATTTCTGTGCTTTGGAGCAAAACTTGTAAGCAGCTAGGATTTGGACCAGCTCTGTATAACCTTTCGTATTCGGGAATTTGGCTAGGCAGAACACCACCTTTGATTGCTGTAAGACTTGATATAAGATTTTGATGTTCTGGTATG-CTATATACTGTTGTCTTCTTCACAAACTTATTGTAGACGTTGGAGTTTTAACGTTCTTGTTGTGTATGTTGAATCCTATGACCAGCTAATATGTACGGTAAATGTCTTGCATTAACTCCAGATACAT</genome_strand>
        <mrna_strand>ACTTTTTTTTGTTGCTCTTCAATTTCTTCTGCTTGATCGAAGATGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGACCAATGGAAGAGGATGCCCCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGGAAAAATGAGGAAGAGGAGTTCAATACTGGGCCACTTTCTGTCCTCATGATGAGTGTTAAGAATAACACACAG...................................................................................................................................................................................................................................................................GTGCTCATCAACTGTAGGAACAACAGGAAACTTCTTGGTCGTGTGAGAGCATTTGATCGTCACTGCAATATGGTGCTTGAAAATGTTAGAGAAATGTGGACTGAG..................................................................................................................................................................................................GTGCCCAAGACTGGAAAAGGAAAAAAGAAAGCTGTTGCTGTTAACAAAGATAGGTTTATCAGCAAGATGTTCCTTCGGGGAGATTCTGTGATCATTGTCCTCCGAAATCCTAAGTAGAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATTGGATTTCTGTGCTTTGGAGCAAAACTTGTAAGCAGCTAGGATTTGGACCAGCTCTGTATAACCTTTCGTATTCGGGAATTTGGCTAGGCAGAACACCACCTTTGATTGCTGTAAGACTTGATATAAGATTTTGATGTTCTGGTATGCCTATATACTGTTGTCTTCTTCACAAACTTATTGTAGACGTTGGAGTTNTAACGTTCTTGTTGTGTATGTTGAATCCTATGACCAGCTAATATGTACGGTAAATGTCTTGCATTAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E283751" ref_strand="+" ref_description="SGN-E283751 [cLES-1-K1](-)">
      <seq>gtgtgagagcatttgatcgtcactgcaatatggtgcttgaaaatgttagagaaatgtggactgaggtgcccaagactggaaaaggaaaaaagaaagctgttgctgttaacaaagataggtttatcagcaagatgttccttcggggagattctgtgatcattgtcctccgaaatcctaagtagagaggtgaattggatttctgtgctttggagcaaaacttgtaagcagctaggatttggaccagctctgtataacctttcgtattcgggaatttggctaggcagaacaccacctttgattgctgtaagacttgatataagattttgatgttctggtatgctatatactgttgtcttcttcacaaacttattgtagacgttggagttttaacgttcttgttgtgtatgttgaatcctatgaccagctaataagaacggtaaatgtcttgcattaactccaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="93769" stop="91664"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93469" g_stop="93405" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93404" i_stop="93211" i_length="194">
            <donor d_prob="0.639" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93210" g_stop="93090" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="186" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93089" i_stop="92243" i_length="847">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92242" g_stop="91969" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="460" r_length="274" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="461" polyA_stop="472"/>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E283751" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283751" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93469" e_stop="93405"/>
          <exon e_start="93210" e_stop="93090"/>
          <exon e_start="92242" e_stop="91969"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTGAGAGCATTTGATTGTCACTGCAATATGGTGCTTGAAAATGTTAGAGAAATGTGGACTGAGGTTTGTTTGTTCTTGACTTAATCAACTTTTTGGGACAATGTGTATTGTGTCTTGGATCTGTATCTTGCGTCAAAAAGCTCCAGTTACCAAGATTGTTTATATTATTTTTCAGGTTCCTAAGGGCAATGTGTCTTGGATTTGAAACTTGTACAAAAAGACTCCACTTAACAAAGTTGTTTATGTTTATTCTTCAGGTGCCCAAGACTGGAAAAGGAAAAAAGAAAGCTGTTGCTGTTAACAAAGATAGGTTTATCAGCAAGATGTTCCTTCGGGGAGATTCTGTGATCATTGTCCTCCGAAATCCTAAGTAGAGAGGTACTGTTGGATCTTTGACATAGTGGTTGGAGTAATTTTCTTTGAATTATGAGCTAGTTCCTTTAATTGGTCCATGTTTGAAGTGCAATATCCTTTTAACTTGCTATTATGTAATCAAATGTTTGGTATATAAGAACTGTAAATGCTAAGTAATATTTGTTGAATCCATTATTGTGAAATTTATCAATTTATTATCATAAATAAAATTTGGAACTTCAAAAATGATTAACTCTTAGCATTTAAATAATTGTCTTTTCTGATGAACTATGAAGATCTATAATAAATGAAATATAACGTTCCTATAAATATCAGAAAAATGTGTATACATATGATAGGAAGCTCAAGGTTGGGATCAGGAAACAAACTAGTGGATTAAAATCTGCAAGTTCTATTCTCCAAGTTTAGCTAATGAAGTATGAAGACTGTAAAAATGGTACTGAAAGAACTAACCTCATGCTCGAAAAACTCTCCTGCTAGAGCAGTGCATGGGATTAGGAAGAGCATGAGAACATATATTGTTTTCACTGCTTCCCTTTTATCTCTTGTTGAGCAAAAGATCTATCGGTAACATCATCTCTTACCTTACAAGGTAGGGGAAAGTTTTGTGTACACGTTACCCTCCTCACCAAACCCCACTTGTTGGGATTCATTCTGGGGTTTGTTGTTTTTGGACATATTTCTGTCTGCATACAAAAATGTTCCATTTCGTCTTCTTTTTTCTACTTGAAATGCATTTCTGTGTGGTTATGCACATTCTTAATTTTTCCCTTGGTGTTCCCACATTTTTGTTTGCCTGTATTTAATTATCTGATCGTTGGTAGTAATTCAATACACTTGTGTACTGCAGGTGAATTGGATTTCTGTGCTTTGGAGCAAAACTTGTAAGCAGCTAGGATTTGGACCAGCTCTGTATAACCTTTCGTATTCGGGAATTTGGCTAGGCAGAACACCACCTTTGATTGCTGTAAGACTTGATATAAGATTTTGATGTTCTGGTATGCTATATACTGTTGTCTTCTTCACAAACTTATTGTAGACGTTGGAGTTTTAACGTTCTTGTTGTGTATGTTGAATCCTATGACCAGCTAATATGTACGGTAAATGTCTTGCATTAACTCCAG</genome_strand>
        <mrna_strand>GTGTGAGAGCATTTGATCGTCACTGCAATATGGTGCTTGAAAATGTTAGAGAAATGTGGACTGAG..................................................................................................................................................................................................GTGCCCAAGACTGGAAAAGGAAAAAAGAAAGCTGTTGCTGTTAACAAAGATAGGTTTATCAGCAAGATGTTCCTTCGGGGAGATTCTGTGATCATTGTCCTCCGAAATCCTAAGTAGAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATTGGATTTCTGTGCTTTGGAGCAAAACTTGTAAGCAGCTAGGATTTGGACCAGCTCTGTATAACCTTTCGTATTCGGGAATTTGGCTAGGCAGAACACCACCTTTGATTGCTGTAAGACTTGATATAAGATTTTGATGTTCTGGTATGCTATATACTGTTGTCTTCTTCACAAACTTATTGTAGACGTTGGAGTTTTAACGTTCTTGTTGTGTATGTTGAATCCTATGACCAGCTAATAAGAACGGTAAATGTCTTGCATTAACTCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E227442" ref_strand="+" ref_description="SGN-E227442 [cLEL-30-B4](-)">
      <seq>aaaaagaaagctgttgctgttaacaaagataggtttatcagcaagatgttccttcggggagattctgtgatcattgtcctccgaaatcctaagtagagaggtgaattggatttctgtgctttggagcaaaacttgtaagcagctaggatttggaccagctctgtataacctttcgtattcgggaatttggctaggcagaaccccccctttgattgctgtaagacttgatataagattttgatgttctggtatgctatatactgttgtcttcttcccaaacttattgtagacgttggagttttaacgttcttgttgtgtatgttgaatcctatgaccagctaatatgtacggtaaatgtcttgcattaactccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="93489" stop="91664"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93189" g_stop="93090" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93089" i_stop="92243" i_length="847">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92242" g_stop="91969" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="374" r_length="274" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="375" polyA_stop="408"/>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E227442" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>374</cumulative_length_of_scored_exons>
        <coverage percentage="0.917" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E227442" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93189" e_stop="93090"/>
          <exon e_start="92242" e_stop="91969"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGAAAGCTGTTGCTGTTAACAAAGATAGGTTTATCAGCAAGATGTTCCTTCGGGGAGATTCTGTGATCATTGTCCTCCGAAATCCTAAGTAGAGAGGTACTGTTGGATCTTTGACATAGTGGTTGGAGTAATTTTCTTTGAATTATGAGCTAGTTCCTTTAATTGGTCCATGTTTGAAGTGCAATATCCTTTTAACTTGCTATTATGTAATCAAATGTTTGGTATATAAGAACTGTAAATGCTAAGTAATATTTGTTGAATCCATTATTGTGAAATTTATCAATTTATTATCATAAATAAAATTTGGAACTTCAAAAATGATTAACTCTTAGCATTTAAATAATTGTCTTTTCTGATGAACTATGAAGATCTATAATAAATGAAATATAACGTTCCTATAAATATCAGAAAAATGTGTATACATATGATAGGAAGCTCAAGGTTGGGATCAGGAAACAAACTAGTGGATTAAAATCTGCAAGTTCTATTCTCCAAGTTTAGCTAATGAAGTATGAAGACTGTAAAAATGGTACTGAAAGAACTAACCTCATGCTCGAAAAACTCTCCTGCTAGAGCAGTGCATGGGATTAGGAAGAGCATGAGAACATATATTGTTTTCACTGCTTCCCTTTTATCTCTTGTTGAGCAAAAGATCTATCGGTAACATCATCTCTTACCTTACAAGGTAGGGGAAAGTTTTGTGTACACGTTACCCTCCTCACCAAACCCCACTTGTTGGGATTCATTCTGGGGTTTGTTGTTTTTGGACATATTTCTGTCTGCATACAAAAATGTTCCATTTCGTCTTCTTTTTTCTACTTGAAATGCATTTCTGTGTGGTTATGCACATTCTTAATTTTTCCCTTGGTGTTCCCACATTTTTGTTTGCCTGTATTTAATTATCTGATCGTTGGTAGTAATTCAATACACTTGTGTACTGCAGGTGAATTGGATTTCTGTGCTTTGGAGCAAAACTTGTAAGCAGCTAGGATTTGGACCAGCTCTGTATAACCTTTCGTATTCGGGAATTTGGCTAGGCAGAACACCACCTTTGATTGCTGTAAGACTTGATATAAGATTTTGATGTTCTGGTATGCTATATACTGTTGTCTTCTTCACAAACTTATTGTAGACGTTGGAGTTTTAACGTTCTTGTTGTGTATGTTGAATCCTATGACCAGCTAATATGTACGGTAAATGTCTTGCATTAACTCCAG</genome_strand>
        <mrna_strand>AAAAAGAAAGCTGTTGCTGTTAACAAAGATAGGTTTATCAGCAAGATGTTCCTTCGGGGAGATTCTGTGATCATTGTCCTCCGAAATCCTAAGTAGAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATTGGATTTCTGTGCTTTGGAGCAAAACTTGTAAGCAGCTAGGATTTGGACCAGCTCTGTATAACCTTTCGTATTCGGGAATTTGGCTAGGCAGAACCCCCCCTTTGATTGCTGTAAGACTTGATATAAGATTTTGATGTTCTGGTATGCTATATACTGTTGTCTTCTTCCCAAACTTATTGTAGACGTTGGAGTTTTAACGTTCTTGTTGTGTATGTTGAATCCTATGACCAGCTAATATGTACGGTAAATGTCTTGCATTAACTCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E227372" ref_strand="+" ref_description="SGN-E227372 [cLEL-30-B4](-)">
      <seq>aaaaaagaaagctgttgctgttaacaaagataggtttatcagcaagatgttccttcggggagattctgtgatcattgtcctccgaaatcctaagtaaaaaggtgaattggatttctgtgctttggagcaaaacttgtaagcagctaggatttggaccagctctgtataacctttcgtattcgggaatttggctaggcagaacaccccctttgattgctgtaagacttgatataaaattttgatgttctggtatgctataaactgttgtcttcttcccaaacttattgtaaacgttggagttttaacgttcctgttgtgtatgttgaatcctatggccagctaatatgtacggtaaatgtcttgcattaacccccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="93490" stop="91664"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93190" g_stop="93090" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93089" i_stop="92243" i_length="847">
            <donor d_prob="0.952" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92242" g_stop="91974" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="370" r_length="269" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="375" polyA_stop="409"/>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E227372" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>370</cumulative_length_of_scored_exons>
        <coverage percentage="0.905" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E227372" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93190" e_stop="93090"/>
          <exon e_start="92242" e_stop="91974"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAGAAAGCTGTTGCTGTTAACAAAGATAGGTTTATCAGCAAGATGTTCCTTCGGGGAGATTCTGTGATCATTGTCCTCCGAAATCCTAAGTAGAGAGGTACTGTTGGATCTTTGACATAGTGGTTGGAGTAATTTTCTTTGAATTATGAGCTAGTTCCTTTAATTGGTCCATGTTTGAAGTGCAATATCCTTTTAACTTGCTATTATGTAATCAAATGTTTGGTATATAAGAACTGTAAATGCTAAGTAATATTTGTTGAATCCATTATTGTGAAATTTATCAATTTATTATCATAAATAAAATTTGGAACTTCAAAAATGATTAACTCTTAGCATTTAAATAATTGTCTTTTCTGATGAACTATGAAGATCTATAATAAATGAAATATAACGTTCCTATAAATATCAGAAAAATGTGTATACATATGATAGGAAGCTCAAGGTTGGGATCAGGAAACAAACTAGTGGATTAAAATCTGCAAGTTCTATTCTCCAAGTTTAGCTAATGAAGTATGAAGACTGTAAAAATGGTACTGAAAGAACTAACCTCATGCTCGAAAAACTCTCCTGCTAGAGCAGTGCATGGGATTAGGAAGAGCATGAGAACATATATTGTTTTCACTGCTTCCCTTTTATCTCTTGTTGAGCAAAAGATCTATCGGTAACATCATCTCTTACCTTACAAGGTAGGGGAAAGTTTTGTGTACACGTTACCCTCCTCACCAAACCCCACTTGTTGGGATTCATTCTGGGGTTTGTTGTTTTTGGACATATTTCTGTCTGCATACAAAAATGTTCCATTTCGTCTTCTTTTTTCTACTTGAAATGCATTTCTGTGTGGTTATGCACATTCTTAATTTTTCCCTTGGTGTTCCCACATTTTTGTTTGCCTGTATTTAATTATCTGATCGTTGGTAGTAATTCAATACACTTGTGTACTGCAGGTGAATTGGATTTCTGTGCTTTGGAGCAAAACTTGTAAGCAGCTAGGATTTGGACCAGCTCTGTATAACCTTTCGTATTCGGGAATTTGGCTAGGCAGAACACCACCTTTGATTGCTGTAAGACTTGATATAAGATTTTGATGTTCTGGTATGCTATATACTGTTGTCTTCTTCACAAACTTATTGTAGACGTTGGAGTTTTAACGTTCTTGTTGTGTATGTTGAATCCTATGACCAGCTAATATGTACGGTAAATGTCTTGCATTAAC</genome_strand>
        <mrna_strand>AAAAAAGAAAGCTGTTGCTGTTAACAAAGATAGGTTTATCAGCAAGATGTTCCTTCGGGGAGATTCTGTGATCATTGTCCTCCGAAATCCTAAGTAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATTGGATTTCTGTGCTTTGGAGCAAAACTTGTAAGCAGCTAGGATTTGGACCAGCTCTGTATAACCTTTCGTATTCGGGAATTTGGCTAGGCAGAACACCCCCTTTGATTGCTGTAAGACTTGATATAAAATTTTGATGTTCTGGTATGCTATAAACTGTTGTCTTCTTCCCAAACTTATTGTAAACGTTGGAGTTTTAACGTTCCTGTTGTGTATGTTGAATCCTATGGCCAGCTAATATGTACGGTAAATGTCTTGCATTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E222381" ref_strand="+" ref_description="SGN-E222381 [cLEL-16-J10](-)">
      <seq>cgtgtagagcatttgatcgtcactcaatatggtgcttaaaatgttagagaaatgtggactgaggtgcccaagactggaaaaggaaaaaagaaagctgttgctgttaacaaagataggtttatcagcaagatgttccttcggggagattctgtgatcattgtcctccgaaatcctaagtagagaggtgaattggatttctgtgctttggagcaaaacttgtaagcagctaggatttggaccagctctgtataacctttcgtattcgggaatttggctaggcagaacaccacctttgattgctgtaagacttgatataagattttgatgttctggtatgctatatactgttgtcttcttcacaaacttattgtagacgttggagttttaacgttcttgttgtgtatgttgaatcctatgaccagctaatatgtacggtaaatgtcttgcattaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="93770" stop="91675"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93470" g_stop="93405" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93404" i_stop="93211" i_length="194">
            <donor d_prob="0.639" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93210" g_stop="93090" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="184" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93089" i_stop="92243" i_length="847">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92242" g_stop="91975" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="452" r_length="268" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="453" polyA_stop="477"/>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E222381" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E222381" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93470" e_stop="93405"/>
          <exon e_start="93210" e_stop="93090"/>
          <exon e_start="92242" e_stop="91975"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTGTGAGAGCATTTGATTGTCACTGCAATATGGTGCTTGAAAATGTTAGAGAAATGTGGACTGAGGTTTGTTTGTTCTTGACTTAATCAACTTTTTGGGACAATGTGTATTGTGTCTTGGATCTGTATCTTGCGTCAAAAAGCTCCAGTTACCAAGATTGTTTATATTATTTTTCAGGTTCCTAAGGGCAATGTGTCTTGGATTTGAAACTTGTACAAAAAGACTCCACTTAACAAAGTTGTTTATGTTTATTCTTCAGGTGCCCAAGACTGGAAAAGGAAAAAAGAAAGCTGTTGCTGTTAACAAAGATAGGTTTATCAGCAAGATGTTCCTTCGGGGAGATTCTGTGATCATTGTCCTCCGAAATCCTAAGTAGAGAGGTACTGTTGGATCTTTGACATAGTGGTTGGAGTAATTTTCTTTGAATTATGAGCTAGTTCCTTTAATTGGTCCATGTTTGAAGTGCAATATCCTTTTAACTTGCTATTATGTAATCAAATGTTTGGTATATAAGAACTGTAAATGCTAAGTAATATTTGTTGAATCCATTATTGTGAAATTTATCAATTTATTATCATAAATAAAATTTGGAACTTCAAAAATGATTAACTCTTAGCATTTAAATAATTGTCTTTTCTGATGAACTATGAAGATCTATAATAAATGAAATATAACGTTCCTATAAATATCAGAAAAATGTGTATACATATGATAGGAAGCTCAAGGTTGGGATCAGGAAACAAACTAGTGGATTAAAATCTGCAAGTTCTATTCTCCAAGTTTAGCTAATGAAGTATGAAGACTGTAAAAATGGTACTGAAAGAACTAACCTCATGCTCGAAAAACTCTCCTGCTAGAGCAGTGCATGGGATTAGGAAGAGCATGAGAACATATATTGTTTTCACTGCTTCCCTTTTATCTCTTGTTGAGCAAAAGATCTATCGGTAACATCATCTCTTACCTTACAAGGTAGGGGAAAGTTTTGTGTACACGTTACCCTCCTCACCAAACCCCACTTGTTGGGATTCATTCTGGGGTTTGTTGTTTTTGGACATATTTCTGTCTGCATACAAAAATGTTCCATTTCGTCTTCTTTTTTCTACTTGAAATGCATTTCTGTGTGGTTATGCACATTCTTAATTTTTCCCTTGGTGTTCCCACATTTTTGTTTGCCTGTATTTAATTATCTGATCGTTGGTAGTAATTCAATACACTTGTGTACTGCAGGTGAATTGGATTTCTGTGCTTTGGAGCAAAACTTGTAAGCAGCTAGGATTTGGACCAGCTCTGTATAACCTTTCGTATTCGGGAATTTGGCTAGGCAGAACACCACCTTTGATTGCTGTAAGACTTGATATAAGATTTTGATGTTCTGGTATGCTATATACTGTTGTCTTCTTCACAAACTTATTGTAGACGTTGGAGTTTTAACGTTCTTGTTGTGTATGTTGAATCCTATGACCAGCTAATATGTACGGTAAATGTCTTGCATTAA</genome_strand>
        <mrna_strand>CGTGT-AGAGCATTTGATCGTCACT-CAATATGGTGCTT-AAAATGTTAGAGAAATGTGGACTGAG..................................................................................................................................................................................................GTGCCCAAGACTGGAAAAGGAAAAAAGAAAGCTGTTGCTGTTAACAAAGATAGGTTTATCAGCAAGATGTTCCTTCGGGGAGATTCTGTGATCATTGTCCTCCGAAATCCTAAGTAGAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATTGGATTTCTGTGCTTTGGAGCAAAACTTGTAAGCAGCTAGGATTTGGACCAGCTCTGTATAACCTTTCGTATTCGGGAATTTGGCTAGGCAGAACACCACCTTTGATTGCTGTAAGACTTGATATAAGATTTTGATGTTCTGGTATGCTATATACTGTTGTCTTCTTCACAAACTTATTGTAGACGTTGGAGTTTTAACGTTCTTGTTGTGTATGTTGAATCCTATGACCAGCTAATATGTACGGTAAATGTCTTGCATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E282062" ref_strand="-" ref_description="SGN-E282062 [cLES-2-H10]">
      <seq>tatggtgcttgaaaatgttagagaaatgtggactgaggtgcccaagactggaaaaggaaaaaagaaagctgttgctgttaacaaagataggtttatcagcaagatgttccttcggggagattctgtgatcattgtcctccgaaatcctaagtagagaggtgaattggatttctgtgctttggagcaaaacttgtaagcagctaggatttggaccagctctgtataacctttcgtattcgggaatttggctaggcagaacaccacctttgattgctgtaagacttgatataagattttgatgttctggtatgctatatactgttgtcttcttcacaaacttattgtagacgttggagttttaacgttcttgttgtgtatgttgaatcctatgaccagctaatatgtacggtaaatgtcttgcattaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="93741" stop="91675"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93441" g_stop="93405" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93404" i_stop="93211" i_length="194">
            <donor d_prob="0.639" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93210" g_stop="93090" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="158" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93089" i_stop="92243" i_length="847">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92242" g_stop="91975" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="426" r_length="268" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="427" polyA_stop="443"/>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E282062" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282062" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="93441" e_stop="93405"/>
          <exon e_start="93210" e_stop="93090"/>
          <exon e_start="92242" e_stop="91975"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGGTGCTTGAAAATGTTAGAGAAATGTGGACTGAGGTTTGTTTGTTCTTGACTTAATCAACTTTTTGGGACAATGTGTATTGTGTCTTGGATCTGTATCTTGCGTCAAAAAGCTCCAGTTACCAAGATTGTTTATATTATTTTTCAGGTTCCTAAGGGCAATGTGTCTTGGATTTGAAACTTGTACAAAAAGACTCCACTTAACAAAGTTGTTTATGTTTATTCTTCAGGTGCCCAAGACTGGAAAAGGAAAAAAGAAAGCTGTTGCTGTTAACAAAGATAGGTTTATCAGCAAGATGTTCCTTCGGGGAGATTCTGTGATCATTGTCCTCCGAAATCCTAAGTAGAGAGGTACTGTTGGATCTTTGACATAGTGGTTGGAGTAATTTTCTTTGAATTATGAGCTAGTTCCTTTAATTGGTCCATGTTTGAAGTGCAATATCCTTTTAACTTGCTATTATGTAATCAAATGTTTGGTATATAAGAACTGTAAATGCTAAGTAATATTTGTTGAATCCATTATTGTGAAATTTATCAATTTATTATCATAAATAAAATTTGGAACTTCAAAAATGATTAACTCTTAGCATTTAAATAATTGTCTTTTCTGATGAACTATGAAGATCTATAATAAATGAAATATAACGTTCCTATAAATATCAGAAAAATGTGTATACATATGATAGGAAGCTCAAGGTTGGGATCAGGAAACAAACTAGTGGATTAAAATCTGCAAGTTCTATTCTCCAAGTTTAGCTAATGAAGTATGAAGACTGTAAAAATGGTACTGAAAGAACTAACCTCATGCTCGAAAAACTCTCCTGCTAGAGCAGTGCATGGGATTAGGAAGAGCATGAGAACATATATTGTTTTCACTGCTTCCCTTTTATCTCTTGTTGAGCAAAAGATCTATCGGTAACATCATCTCTTACCTTACAAGGTAGGGGAAAGTTTTGTGTACACGTTACCCTCCTCACCAAACCCCACTTGTTGGGATTCATTCTGGGGTTTGTTGTTTTTGGACATATTTCTGTCTGCATACAAAAATGTTCCATTTCGTCTTCTTTTTTCTACTTGAAATGCATTTCTGTGTGGTTATGCACATTCTTAATTTTTCCCTTGGTGTTCCCACATTTTTGTTTGCCTGTATTTAATTATCTGATCGTTGGTAGTAATTCAATACACTTGTGTACTGCAGGTGAATTGGATTTCTGTGCTTTGGAGCAAAACTTGTAAGCAGCTAGGATTTGGACCAGCTCTGTATAACCTTTCGTATTCGGGAATTTGGCTAGGCAGAACACCACCTTTGATTGCTGTAAGACTTGATATAAGATTTTGATGTTCTGGTATGCTATATACTGTTGTCTTCTTCACAAACTTATTGTAGACGTTGGAGTTTTAACGTTCTTGTTGTGTATGTTGAATCCTATGACCAGCTAATATGTACGGTAAATGTCTTGCATTAA</genome_strand>
        <mrna_strand>TATGGTGCTTGAAAATGTTAGAGAAATGTGGACTGAG..................................................................................................................................................................................................GTGCCCAAGACTGGAAAAGGAAAAAAGAAAGCTGTTGCTGTTAACAAAGATAGGTTTATCAGCAAGATGTTCCTTCGGGGAGATTCTGTGATCATTGTCCTCCGAAATCCTAAGTAGAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATTGGATTTCTGTGCTTTGGAGCAAAACTTGTAAGCAGCTAGGATTTGGACCAGCTCTGTATAACCTTTCGTATTCGGGAATTTGGCTAGGCAGAACACCACCTTTGATTGCTGTAAGACTTGATATAAGATTTTGATGTTCTGGTATGCTATATACTGTTGTCTTCTTCACAAACTTATTGTAGACGTTGGAGTTTTAACGTTCTTGTTGTGTATGTTGAATCCTATGACCAGCTAATATGTACGGTAAATGTCTTGCATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E715841" ref_strand="+" ref_description="SGN-E715841 [FB15BF10]">
      <seq>ctttaccctctttaaaccctagctcttttgcccccttttctttgttgctcttcaattttttctgcttgatcgaagatgagtcgaccaatggaagaggatgcccctcaagggaaaaatgaggaagaggagttcaatactgggccactttctgtcctcatgatgagtgttaagaataacacacaggtgctcatcaactgtaggaacaacaggaaacttcttggtcgtgtgagagcatttgatcgtcactgcaatatggtgcttgaaaatgttagagaaatgtggactgaggtgcccaagactggaaaaggaaaaaagaaagctgttgctgttaacaaagataggtttatcagcaagatgttccttcggggagattctgtgatcattgtcctccgaaatcccaagtagagaggtgaattggatttctgtgctttggagcaaaacttgtaagcagctaggatttggaccagctctgtataacctttcgtattcgggaatttggctaggcagaacaccacctttgattgctgtaagacttgatataagattttgatgttctggtatgctatatactgttgtcttcttcacaaacttattgtagacgttggagtttaacgttctttttgtgtatgttgaatcctatgaccagctaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="96062" stop="91699"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95762" g_stop="95683" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95682" i_stop="94951" i_length="732">
            <donor d_prob="0.950" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94950" g_stop="94926" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="105" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94925" i_stop="93847" i_length="1079">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93846" g_stop="93769" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="183" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93768" i_stop="93510" i_length="259">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93509" g_stop="93405" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="288" r_length="105" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="93404" i_stop="93211" i_length="194">
            <donor d_prob="0.639" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93210" g_stop="93090" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="409" r_length="121" r_score="0.992"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="93089" i_stop="92243" i_length="847">
            <donor d_prob="0.952" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="92242" g_stop="91999" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="652" r_length="243" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E715841" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E715841" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95762" e_stop="95683"/>
          <exon e_start="94950" e_stop="94926"/>
          <exon e_start="93846" e_stop="93769"/>
          <exon e_start="93509" e_stop="93405"/>
          <exon e_start="93210" e_stop="93090"/>
          <exon e_start="92242" e_stop="91999"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTACCCTCTTTAAACCCTAGCTCCTTTGCCCACTTTTTTTTGTTGCTCTTCAATTTCTTCTGCTTGATCGAAGATGAGGTAATGGTTTACTGCTATTTTACACTTTGCCTTTGTACATTTGAAGTTCTTCAATTTTCTCTGTTTGATTTTTTCTCGTCATTGCAGTAACCTATTTAGTAGATTATGTAATGTTATTGTTAATCAAAGAAGTAGATAATTTTCCCTAGGTAAAGTAAGTTATTGGACGAGGAGATGAGAAATTGAAGAATTTTAGCTGTTTTCTGGACTAATTTTGTGTAGTTTTTTTTTTTTTTGGGTATTGCGTGCTTTTGGAAGTTTAAATTAGAGTGAGTAGATTCATATAACTGAAGGCAACTAGCTTGGCGTGAAGGCCTGGAATGTTTCTTTTTTCGAGTTCTATATGCAGTTTAAACACTATGCTAATTGGGTTTCATGTAGCTAAACAATTGTAAAGTTGGATTTTCGAGTAATTCAGTCTTCTCTAGCCCTTTATTACTACTGATCTTAGTTCTTTTTGTTCACTCTCTACTATATCCAAGCTTAAAACCTATGTTATTCCGTGCACATCAGTAATAGAACCCTTATATTGTCTAGAATACTAGGATAACAAGGCTGTAAGATGTACAAATAGAATTAAGAAAAAACTAGGTCAGTGTCTCATGTTTTTGTTGTTCATTGCTGATGTATTTCTCTATTCCTGTTGATTTTAGTGTTACCCAAATATTAGTAAGTGGAAGTTTCTAATTGTTTTGCTTTTTCTTTTTCTTTTCTATTTGTGCTCTTTTGCAGTCGACCAATGGAAGAGGATGCCCCTGTAAGTTAGCTTACTTTGCTAGTATTTTGCCCTATACAAAGCTCTCATTGTTTATTTTTCTCATTTTTTCATTGGCATAATCTGTGTTGTGATCTATTTTGTGTTTTAGGGGCTGTCTACTGCTTAGTACTTGTTTTCATTTTCCTTTCTGTTCACCTCAATGCGATGCATTCAATTAGATTTCTTTTGTTGGTAGCCTTGATCCTGCTTTACACGTTACAACTGAAAAGTTTCTAGCATACATCTTTTATTTTATCATATGGAGAATATGTTTATACCTCCCTTTTCAAAGCAAGATCATTGAATTGTTTGATCTGTAGAATATTTTTCAGCACATAACATCAAGTCATTGAATTTTTTTTGGTTAAGTCGTTTGAGTTCACCACTCAAAACAAATGACAAAATCAATTAGAACTTTAAAATAACAATGTAGCTAGGATGAATTTTTCTGTAAAAACTAGAACCTATCAAGTGTAAAAATTATTAGTTGAATTAGTAGAATTTATTTTCTACAGTTGTTTTGTTCCCACCTTCACACAAGTGTTATGTCAGTTTTTCTCATTTACCACATTGGATAACCCAGAAGCTAGGTCCGAACTTTGTAGTTCTCCCTTAACAGACATCCTATTGACATTTTTCTTATATTCTTGGTATGTTTATTTATACATGTACTCTTGTTCATTTTCCATTTGAGTTGCTTCTTGTTTGCCTTCCCGATGCCTAAAGTGCTTAGGTCTAAACTTTGTAGTTCTCCTTTAACAGACATCCTATTGACATTTCGTCTTTTATTCTTGGTATGTTTATTTATACATGTACTCTTGTTGTTCATTTTCCATTTGTGTTGCTTCTTATCTGCCTTCCCGATGTCAAAGTGCTTTGCTTCAAAGTTATCTAGATTAAGCACATAGTGAAAGAGTGTATAATTGGTAGATTATCTAGCTTAAGTACATAGTGAAAAAGTGTATGCCCTTCTATGTTGGTGTGATAGAGGAATGAACCTTATCAGTCCCAGTGAATATGATTTGCTTATCAGATTTTGTGAAAGATGTCTTATGTTTGCCTATGGATCTTTTGTCTAGCAAGGGAAAAATGAGGAAGAGGAGTTCAATACTGGGCCACTTTCTGTCCTCATGATGAGTGTTAAGAATAACACACAGGTATCTAATATCTTTAGCACCTACAACTGTGTCTTTCTTCATGTCGTGTTTATTTATCAATTTTAATTGTTAAAAAGAGAGATAAAATCTATCCTGGAGCCTTGTTTATGTTGACAATTTACTTTTTAAAGTCATGCCGGTATACTTCCTCATTAATCTTAGATTTAAATACTATAGAAAAAGATGCAAGCTTCGGTTTTGTATGTGGAAGGCATCAGCTTTGTGCTTGTTATTTTACAGATATTTTTTCTGGATCTAGGTGCTCATCAACTGTAGGAACAACAGGAAACTTTTTGGTCGTGTGAGAGCATTTGATTGTCACTGCAATATGGTGCTTGAAAATGTTAGAGAAATGTGGACTGAGGTTTGTTTGTTCTTGACTTAATCAACTTTTTGGGACAATGTGTATTGTGTCTTGGATCTGTATCTTGCGTCAAAAAGCTCCAGTTACCAAGATTGTTTATATTATTTTTCAGGTTCCTAAGGGCAATGTGTCTTGGATTTGAAACTTGTACAAAAAGACTCCACTTAACAAAGTTGTTTATGTTTATTCTTCAGGTGCCCAAGACTGGAAAAGGAAAAAAGAAAGCTGTTGCTGTTAACAAAGATAGGTTTATCAGCAAGATGTTCCTTCGGGGAGATTCTGTGATCATTGTCCTCCGAAATCCTAAGTAGAGAGGTACTGTTGGATCTTTGACATAGTGGTTGGAGTAATTTTCTTTGAATTATGAGCTAGTTCCTTTAATTGGTCCATGTTTGAAGTGCAATATCCTTTTAACTTGCTATTATGTAATCAAATGTTTGGTATATAAGAACTGTAAATGCTAAGTAATATTTGTTGAATCCATTATTGTGAAATTTATCAATTTATTATCATAAATAAAATTTGGAACTTCAAAAATGATTAACTCTTAGCATTTAAATAATTGTCTTTTCTGATGAACTATGAAGATCTATAATAAATGAAATATAACGTTCCTATAAATATCAGAAAAATGTGTATACATATGATAGGAAGCTCAAGGTTGGGATCAGGAAACAAACTAGTGGATTAAAATCTGCAAGTTCTATTCTCCAAGTTTAGCTAATGAAGTATGAAGACTGTAAAAATGGTACTGAAAGAACTAACCTCATGCTCGAAAAACTCTCCTGCTAGAGCAGTGCATGGGATTAGGAAGAGCATGAGAACATATATTGTTTTCACTGCTTCCCTTTTATCTCTTGTTGAGCAAAAGATCTATCGGTAACATCATCTCTTACCTTACAAGGTAGGGGAAAGTTTTGTGTACACGTTACCCTCCTCACCAAACCCCACTTGTTGGGATTCATTCTGGGGTTTGTTGTTTTTGGACATATTTCTGTCTGCATACAAAAATGTTCCATTTCGTCTTCTTTTTTCTACTTGAAATGCATTTCTGTGTGGTTATGCACATTCTTAATTTTTCCCTTGGTGTTCCCACATTTTTGTTTGCCTGTATTTAATTATCTGATCGTTGGTAGTAATTCAATACACTTGTGTACTGCAGGTGAATTGGATTTCTGTGCTTTGGAGCAAAACTTGTAAGCAGCTAGGATTTGGACCAGCTCTGTATAACCTTTCGTATTCGGGAATTTGGCTAGGCAGAACACCACCTTTGATTGCTGTAAGACTTGATATAAGATTTTGATGTTCTGGTATGCTATATACTGTTGTCTTCTTCACAAACTTATTGTAGACGTTGGAGTTTTAACGTTCTTGTTGTGTATGTTGAATCCTATGACCAGCTAATA</genome_strand>
        <mrna_strand>CTTTACCCTCTTTAAACCCTAGCTCTTTTGCCCCCTTTTCTTTGTTGCTCTTCAATTTTTTCTGCTTGATCGAAGATGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGACCAATGGAAGAGGATGCCCCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGGAAAAATGAGGAAGAGGAGTTCAATACTGGGCCACTTTCTGTCCTCATGATGAGTGTTAAGAATAACACACAG...................................................................................................................................................................................................................................................................GTGCTCATCAACTGTAGGAACAACAGGAAACTTCTTGGTCGTGTGAGAGCATTTGATCGTCACTGCAATATGGTGCTTGAAAATGTTAGAGAAATGTGGACTGAG..................................................................................................................................................................................................GTGCCCAAGACTGGAAAAGGAAAAAAGAAAGCTGTTGCTGTTAACAAAGATAGGTTTATCAGCAAGATGTTCCTTCGGGGAGATTCTGTGATCATTGTCCTCCGAAATCCCAAGTAGAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATTGGATTTCTGTGCTTTGGAGCAAAACTTGTAAGCAGCTAGGATTTGGACCAGCTCTGTATAACCTTTCGTATTCGGGAATTTGGCTAGGCAGAACACCACCTTTGATTGCTGTAAGACTTGATATAAGATTTTGATGTTCTGGTATGCTATATACTGTTGTCTTCTTCACAAACTTATTGTAGACGTTGGAG-TTTAACGTTCTTTTTGTGTATGTTGAATCCTATGACCAGCTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E271688" ref_strand="+" ref_description="SGN-E271688 [cLEM-23-H17]">
      <seq>tcctttgcccacttttttttgttgctcttcaatttcttctgcttgatcgaagatgagtcgaccaatggaagaggatgcccctcaagggaaaaatgaggaagaggagttcaatactgggccactttctgtcctcatgatgagtgttaagaataacacacaggtgctcatcaactgtaggaacaacaggaaacttcttggtcgtgtgagagcatttgatcgtcactgcaatatggtgcttgaaaatgttagagaaatgtggactgaggtgcccaagactggaaaaggaaaaaagaaagctgttgctgttaacaaagataggtttatcagcaagatgttccttcggggagattctgtgatcattgtcctccgaaatcctaagtagagaggtgaattggatttctgtgctttggagcaaaacttgtaagcagctaggatttggaccagctctgtataacctttcgtattcgggaatttggctaggcagaacaccacctttgattgctgtaagacttgatataagattttgatgttctggtatgctatatactgttgtcttcttcacaaacttattgtagacgttggagttttaacgttcttgttgtgtatgttgaatcctatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="96039" stop="91710"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95739" g_stop="95683" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95682" i_stop="94951" i_length="732">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94950" g_stop="94926" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="82" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94925" i_stop="93847" i_length="1079">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93846" g_stop="93769" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="160" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93768" i_stop="93510" i_length="259">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93509" g_stop="93405" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="265" r_length="105" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="93404" i_stop="93211" i_length="194">
            <donor d_prob="0.639" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93210" g_stop="93090" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="386" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="93089" i_stop="92243" i_length="847">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="92242" g_stop="92010" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="619" r_length="233" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E271688" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271688" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95739" e_stop="95683"/>
          <exon e_start="94950" e_stop="94926"/>
          <exon e_start="93846" e_stop="93769"/>
          <exon e_start="93509" e_stop="93405"/>
          <exon e_start="93210" e_stop="93090"/>
          <exon e_start="92242" e_stop="92010"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTTTGCCCACTTTTTTTTGTTGCTCTTCAATTTCTTCTGCTTGATCGAAGATGAGGTAATGGTTTACTGCTATTTTACACTTTGCCTTTGTACATTTGAAGTTCTTCAATTTTCTCTGTTTGATTTTTTCTCGTCATTGCAGTAACCTATTTAGTAGATTATGTAATGTTATTGTTAATCAAAGAAGTAGATAATTTTCCCTAGGTAAAGTAAGTTATTGGACGAGGAGATGAGAAATTGAAGAATTTTAGCTGTTTTCTGGACTAATTTTGTGTAGTTTTTTTTTTTTTTGGGTATTGCGTGCTTTTGGAAGTTTAAATTAGAGTGAGTAGATTCATATAACTGAAGGCAACTAGCTTGGCGTGAAGGCCTGGAATGTTTCTTTTTTCGAGTTCTATATGCAGTTTAAACACTATGCTAATTGGGTTTCATGTAGCTAAACAATTGTAAAGTTGGATTTTCGAGTAATTCAGTCTTCTCTAGCCCTTTATTACTACTGATCTTAGTTCTTTTTGTTCACTCTCTACTATATCCAAGCTTAAAACCTATGTTATTCCGTGCACATCAGTAATAGAACCCTTATATTGTCTAGAATACTAGGATAACAAGGCTGTAAGATGTACAAATAGAATTAAGAAAAAACTAGGTCAGTGTCTCATGTTTTTGTTGTTCATTGCTGATGTATTTCTCTATTCCTGTTGATTTTAGTGTTACCCAAATATTAGTAAGTGGAAGTTTCTAATTGTTTTGCTTTTTCTTTTTCTTTTCTATTTGTGCTCTTTTGCAGTCGACCAATGGAAGAGGATGCCCCTGTAAGTTAGCTTACTTTGCTAGTATTTTGCCCTATACAAAGCTCTCATTGTTTATTTTTCTCATTTTTTCATTGGCATAATCTGTGTTGTGATCTATTTTGTGTTTTAGGGGCTGTCTACTGCTTAGTACTTGTTTTCATTTTCCTTTCTGTTCACCTCAATGCGATGCATTCAATTAGATTTCTTTTGTTGGTAGCCTTGATCCTGCTTTACACGTTACAACTGAAAAGTTTCTAGCATACATCTTTTATTTTATCATATGGAGAATATGTTTATACCTCCCTTTTCAAAGCAAGATCATTGAATTGTTTGATCTGTAGAATATTTTTCAGCACATAACATCAAGTCATTGAATTTTTTTTGGTTAAGTCGTTTGAGTTCACCACTCAAAACAAATGACAAAATCAATTAGAACTTTAAAATAACAATGTAGCTAGGATGAATTTTTCTGTAAAAACTAGAACCTATCAAGTGTAAAAATTATTAGTTGAATTAGTAGAATTTATTTTCTACAGTTGTTTTGTTCCCACCTTCACACAAGTGTTATGTCAGTTTTTCTCATTTACCACATTGGATAACCCAGAAGCTAGGTCCGAACTTTGTAGTTCTCCCTTAACAGACATCCTATTGACATTTTTCTTATATTCTTGGTATGTTTATTTATACATGTACTCTTGTTCATTTTCCATTTGAGTTGCTTCTTGTTTGCCTTCCCGATGCCTAAAGTGCTTAGGTCTAAACTTTGTAGTTCTCCTTTAACAGACATCCTATTGACATTTCGTCTTTTATTCTTGGTATGTTTATTTATACATGTACTCTTGTTGTTCATTTTCCATTTGTGTTGCTTCTTATCTGCCTTCCCGATGTCAAAGTGCTTTGCTTCAAAGTTATCTAGATTAAGCACATAGTGAAAGAGTGTATAATTGGTAGATTATCTAGCTTAAGTACATAGTGAAAAAGTGTATGCCCTTCTATGTTGGTGTGATAGAGGAATGAACCTTATCAGTCCCAGTGAATATGATTTGCTTATCAGATTTTGTGAAAGATGTCTTATGTTTGCCTATGGATCTTTTGTCTAGCAAGGGAAAAATGAGGAAGAGGAGTTCAATACTGGGCCACTTTCTGTCCTCATGATGAGTGTTAAGAATAACACACAGGTATCTAATATCTTTAGCACCTACAACTGTGTCTTTCTTCATGTCGTGTTTATTTATCAATTTTAATTGTTAAAAAGAGAGATAAAATCTATCCTGGAGCCTTGTTTATGTTGACAATTTACTTTTTAAAGTCATGCCGGTATACTTCCTCATTAATCTTAGATTTAAATACTATAGAAAAAGATGCAAGCTTCGGTTTTGTATGTGGAAGGCATCAGCTTTGTGCTTGTTATTTTACAGATATTTTTTCTGGATCTAGGTGCTCATCAACTGTAGGAACAACAGGAAACTTTTTGGTCGTGTGAGAGCATTTGATTGTCACTGCAATATGGTGCTTGAAAATGTTAGAGAAATGTGGACTGAGGTTTGTTTGTTCTTGACTTAATCAACTTTTTGGGACAATGTGTATTGTGTCTTGGATCTGTATCTTGCGTCAAAAAGCTCCAGTTACCAAGATTGTTTATATTATTTTTCAGGTTCCTAAGGGCAATGTGTCTTGGATTTGAAACTTGTACAAAAAGACTCCACTTAACAAAGTTGTTTATGTTTATTCTTCAGGTGCCCAAGACTGGAAAAGGAAAAAAGAAAGCTGTTGCTGTTAACAAAGATAGGTTTATCAGCAAGATGTTCCTTCGGGGAGATTCTGTGATCATTGTCCTCCGAAATCCTAAGTAGAGAGGTACTGTTGGATCTTTGACATAGTGGTTGGAGTAATTTTCTTTGAATTATGAGCTAGTTCCTTTAATTGGTCCATGTTTGAAGTGCAATATCCTTTTAACTTGCTATTATGTAATCAAATGTTTGGTATATAAGAACTGTAAATGCTAAGTAATATTTGTTGAATCCATTATTGTGAAATTTATCAATTTATTATCATAAATAAAATTTGGAACTTCAAAAATGATTAACTCTTAGCATTTAAATAATTGTCTTTTCTGATGAACTATGAAGATCTATAATAAATGAAATATAACGTTCCTATAAATATCAGAAAAATGTGTATACATATGATAGGAAGCTCAAGGTTGGGATCAGGAAACAAACTAGTGGATTAAAATCTGCAAGTTCTATTCTCCAAGTTTAGCTAATGAAGTATGAAGACTGTAAAAATGGTACTGAAAGAACTAACCTCATGCTCGAAAAACTCTCCTGCTAGAGCAGTGCATGGGATTAGGAAGAGCATGAGAACATATATTGTTTTCACTGCTTCCCTTTTATCTCTTGTTGAGCAAAAGATCTATCGGTAACATCATCTCTTACCTTACAAGGTAGGGGAAAGTTTTGTGTACACGTTACCCTCCTCACCAAACCCCACTTGTTGGGATTCATTCTGGGGTTTGTTGTTTTTGGACATATTTCTGTCTGCATACAAAAATGTTCCATTTCGTCTTCTTTTTTCTACTTGAAATGCATTTCTGTGTGGTTATGCACATTCTTAATTTTTCCCTTGGTGTTCCCACATTTTTGTTTGCCTGTATTTAATTATCTGATCGTTGGTAGTAATTCAATACACTTGTGTACTGCAGGTGAATTGGATTTCTGTGCTTTGGAGCAAAACTTGTAAGCAGCTAGGATTTGGACCAGCTCTGTATAACCTTTCGTATTCGGGAATTTGGCTAGGCAGAACACCACCTTTGATTGCTGTAAGACTTGATATAAGATTTTGATGTTCTGGTATGCTATATACTGTTGTCTTCTTCACAAACTTATTGTAGACGTTGGAGTTTTAACGTTCTTGTTGTGTATGTTGAATCCTATG</genome_strand>
        <mrna_strand>TCCTTTGCCCACTTTTTTTTGTTGCTCTTCAATTTCTTCTGCTTGATCGAAGATGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGACCAATGGAAGAGGATGCCCCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGGAAAAATGAGGAAGAGGAGTTCAATACTGGGCCACTTTCTGTCCTCATGATGAGTGTTAAGAATAACACACAG...................................................................................................................................................................................................................................................................GTGCTCATCAACTGTAGGAACAACAGGAAACTTCTTGGTCGTGTGAGAGCATTTGATCGTCACTGCAATATGGTGCTTGAAAATGTTAGAGAAATGTGGACTGAG..................................................................................................................................................................................................GTGCCCAAGACTGGAAAAGGAAAAAAGAAAGCTGTTGCTGTTAACAAAGATAGGTTTATCAGCAAGATGTTCCTTCGGGGAGATTCTGTGATCATTGTCCTCCGAAATCCTAAGTAGAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATTGGATTTCTGTGCTTTGGAGCAAAACTTGTAAGCAGCTAGGATTTGGACCAGCTCTGTATAACCTTTCGTATTCGGGAATTTGGCTAGGCAGAACACCACCTTTGATTGCTGTAAGACTTGATATAAGATTTTGATGTTCTGGTATGCTATATACTGTTGTCTTCTTCACAAACTTATTGTAGACGTTGGAGTTTTAACGTTCTTGTTGTGTATGTTGAATCCTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E354098" ref_strand="+" ref_description="SGN-E354098 [cTOS-16-H5]">
      <seq>cctctttaaaccctagctcctttgcccacttttttttgttgctcttcaatttcttctgcttgatcgaagatgagtcgaccaatggaagaggatgcccctcaagggaaaaatgaggaagaggagttcaatactgggccactttctgtcctcatgatgagtgttaagaataacacacaggtgctcatcaactgtaggaacaacaggaaacttcttggtcgtgtgagagcatttgatcgtcactgcaatatggtgcttgaaaatgttagagaaatgtggactgaggtgcccaagactggaaaaggaaaaaagaaagctgttgctgttaacaaagataggtttatcagcaagatgttccttcggggagattctgtgatcattgtcctccgaaatcctaagtagagaggtgaattggatttctgtgctttggagcaaaacttgtaagcagctaggatttggaccagctctgtataacctttcgtattcgggaatttggctaggcagaacaccacctttgattgctgtaagacttgatataagattttgatgttctggtatgctatatactgttgtcttcttcacaaacttattgtagacgttggagttttaacgttcttggtgtggatgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="96056" stop="91719"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95756" g_stop="95683" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95682" i_stop="94951" i_length="732">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94950" g_stop="94926" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="99" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94925" i_stop="93847" i_length="1079">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93846" g_stop="93769" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="177" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93768" i_stop="93510" i_length="259">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93509" g_stop="93405" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="282" r_length="105" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="93404" i_stop="93211" i_length="194">
            <donor d_prob="0.639" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93210" g_stop="93090" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="403" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="93089" i_stop="92243" i_length="847">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="92242" g_stop="92019" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="627" r_length="224" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E354098" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354098" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95756" e_stop="95683"/>
          <exon e_start="94950" e_stop="94926"/>
          <exon e_start="93846" e_stop="93769"/>
          <exon e_start="93509" e_stop="93405"/>
          <exon e_start="93210" e_stop="93090"/>
          <exon e_start="92242" e_stop="92019"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTTTAAACCCTAGCTCCTTTGCCCACTTTTTTTTGTTGCTCTTCAATTTCTTCTGCTTGATCGAAGATGAGGTAATGGTTTACTGCTATTTTACACTTTGCCTTTGTACATTTGAAGTTCTTCAATTTTCTCTGTTTGATTTTTTCTCGTCATTGCAGTAACCTATTTAGTAGATTATGTAATGTTATTGTTAATCAAAGAAGTAGATAATTTTCCCTAGGTAAAGTAAGTTATTGGACGAGGAGATGAGAAATTGAAGAATTTTAGCTGTTTTCTGGACTAATTTTGTGTAGTTTTTTTTTTTTTTGGGTATTGCGTGCTTTTGGAAGTTTAAATTAGAGTGAGTAGATTCATATAACTGAAGGCAACTAGCTTGGCGTGAAGGCCTGGAATGTTTCTTTTTTCGAGTTCTATATGCAGTTTAAACACTATGCTAATTGGGTTTCATGTAGCTAAACAATTGTAAAGTTGGATTTTCGAGTAATTCAGTCTTCTCTAGCCCTTTATTACTACTGATCTTAGTTCTTTTTGTTCACTCTCTACTATATCCAAGCTTAAAACCTATGTTATTCCGTGCACATCAGTAATAGAACCCTTATATTGTCTAGAATACTAGGATAACAAGGCTGTAAGATGTACAAATAGAATTAAGAAAAAACTAGGTCAGTGTCTCATGTTTTTGTTGTTCATTGCTGATGTATTTCTCTATTCCTGTTGATTTTAGTGTTACCCAAATATTAGTAAGTGGAAGTTTCTAATTGTTTTGCTTTTTCTTTTTCTTTTCTATTTGTGCTCTTTTGCAGTCGACCAATGGAAGAGGATGCCCCTGTAAGTTAGCTTACTTTGCTAGTATTTTGCCCTATACAAAGCTCTCATTGTTTATTTTTCTCATTTTTTCATTGGCATAATCTGTGTTGTGATCTATTTTGTGTTTTAGGGGCTGTCTACTGCTTAGTACTTGTTTTCATTTTCCTTTCTGTTCACCTCAATGCGATGCATTCAATTAGATTTCTTTTGTTGGTAGCCTTGATCCTGCTTTACACGTTACAACTGAAAAGTTTCTAGCATACATCTTTTATTTTATCATATGGAGAATATGTTTATACCTCCCTTTTCAAAGCAAGATCATTGAATTGTTTGATCTGTAGAATATTTTTCAGCACATAACATCAAGTCATTGAATTTTTTTTGGTTAAGTCGTTTGAGTTCACCACTCAAAACAAATGACAAAATCAATTAGAACTTTAAAATAACAATGTAGCTAGGATGAATTTTTCTGTAAAAACTAGAACCTATCAAGTGTAAAAATTATTAGTTGAATTAGTAGAATTTATTTTCTACAGTTGTTTTGTTCCCACCTTCACACAAGTGTTATGTCAGTTTTTCTCATTTACCACATTGGATAACCCAGAAGCTAGGTCCGAACTTTGTAGTTCTCCCTTAACAGACATCCTATTGACATTTTTCTTATATTCTTGGTATGTTTATTTATACATGTACTCTTGTTCATTTTCCATTTGAGTTGCTTCTTGTTTGCCTTCCCGATGCCTAAAGTGCTTAGGTCTAAACTTTGTAGTTCTCCTTTAACAGACATCCTATTGACATTTCGTCTTTTATTCTTGGTATGTTTATTTATACATGTACTCTTGTTGTTCATTTTCCATTTGTGTTGCTTCTTATCTGCCTTCCCGATGTCAAAGTGCTTTGCTTCAAAGTTATCTAGATTAAGCACATAGTGAAAGAGTGTATAATTGGTAGATTATCTAGCTTAAGTACATAGTGAAAAAGTGTATGCCCTTCTATGTTGGTGTGATAGAGGAATGAACCTTATCAGTCCCAGTGAATATGATTTGCTTATCAGATTTTGTGAAAGATGTCTTATGTTTGCCTATGGATCTTTTGTCTAGCAAGGGAAAAATGAGGAAGAGGAGTTCAATACTGGGCCACTTTCTGTCCTCATGATGAGTGTTAAGAATAACACACAGGTATCTAATATCTTTAGCACCTACAACTGTGTCTTTCTTCATGTCGTGTTTATTTATCAATTTTAATTGTTAAAAAGAGAGATAAAATCTATCCTGGAGCCTTGTTTATGTTGACAATTTACTTTTTAAAGTCATGCCGGTATACTTCCTCATTAATCTTAGATTTAAATACTATAGAAAAAGATGCAAGCTTCGGTTTTGTATGTGGAAGGCATCAGCTTTGTGCTTGTTATTTTACAGATATTTTTTCTGGATCTAGGTGCTCATCAACTGTAGGAACAACAGGAAACTTTTTGGTCGTGTGAGAGCATTTGATTGTCACTGCAATATGGTGCTTGAAAATGTTAGAGAAATGTGGACTGAGGTTTGTTTGTTCTTGACTTAATCAACTTTTTGGGACAATGTGTATTGTGTCTTGGATCTGTATCTTGCGTCAAAAAGCTCCAGTTACCAAGATTGTTTATATTATTTTTCAGGTTCCTAAGGGCAATGTGTCTTGGATTTGAAACTTGTACAAAAAGACTCCACTTAACAAAGTTGTTTATGTTTATTCTTCAGGTGCCCAAGACTGGAAAAGGAAAAAAGAAAGCTGTTGCTGTTAACAAAGATAGGTTTATCAGCAAGATGTTCCTTCGGGGAGATTCTGTGATCATTGTCCTCCGAAATCCTAAGTAGAGAGGTACTGTTGGATCTTTGACATAGTGGTTGGAGTAATTTTCTTTGAATTATGAGCTAGTTCCTTTAATTGGTCCATGTTTGAAGTGCAATATCCTTTTAACTTGCTATTATGTAATCAAATGTTTGGTATATAAGAACTGTAAATGCTAAGTAATATTTGTTGAATCCATTATTGTGAAATTTATCAATTTATTATCATAAATAAAATTTGGAACTTCAAAAATGATTAACTCTTAGCATTTAAATAATTGTCTTTTCTGATGAACTATGAAGATCTATAATAAATGAAATATAACGTTCCTATAAATATCAGAAAAATGTGTATACATATGATAGGAAGCTCAAGGTTGGGATCAGGAAACAAACTAGTGGATTAAAATCTGCAAGTTCTATTCTCCAAGTTTAGCTAATGAAGTATGAAGACTGTAAAAATGGTACTGAAAGAACTAACCTCATGCTCGAAAAACTCTCCTGCTAGAGCAGTGCATGGGATTAGGAAGAGCATGAGAACATATATTGTTTTCACTGCTTCCCTTTTATCTCTTGTTGAGCAAAAGATCTATCGGTAACATCATCTCTTACCTTACAAGGTAGGGGAAAGTTTTGTGTACACGTTACCCTCCTCACCAAACCCCACTTGTTGGGATTCATTCTGGGGTTTGTTGTTTTTGGACATATTTCTGTCTGCATACAAAAATGTTCCATTTCGTCTTCTTTTTTCTACTTGAAATGCATTTCTGTGTGGTTATGCACATTCTTAATTTTTCCCTTGGTGTTCCCACATTTTTGTTTGCCTGTATTTAATTATCTGATCGTTGGTAGTAATTCAATACACTTGTGTACTGCAGGTGAATTGGATTTCTGTGCTTTGGAGCAAAACTTGTAAGCAGCTAGGATTTGGACCAGCTCTGTATAACCTTTCGTATTCGGGAATTTGGCTAGGCAGAACACCACCTTTGATTGCTGTAAGACTTGATATAAGATTTTGATGTTCTGGTATGCTATATACTGTTGTCTTCTTCACAAACTTATTGTAGACGTTGGAGTTTTAACGTTCTTGTTGTGTATGTTG</genome_strand>
        <mrna_strand>CCTCTTTAAACCCTAGCTCCTTTGCCCACTTTTTTTTGTTGCTCTTCAATTTCTTCTGCTTGATCGAAGATGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGACCAATGGAAGAGGATGCCCCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGGAAAAATGAGGAAGAGGAGTTCAATACTGGGCCACTTTCTGTCCTCATGATGAGTGTTAAGAATAACACACAG...................................................................................................................................................................................................................................................................GTGCTCATCAACTGTAGGAACAACAGGAAACTTCTTGGTCGTGTGAGAGCATTTGATCGTCACTGCAATATGGTGCTTGAAAATGTTAGAGAAATGTGGACTGAG..................................................................................................................................................................................................GTGCCCAAGACTGGAAAAGGAAAAAAGAAAGCTGTTGCTGTTAACAAAGATAGGTTTATCAGCAAGATGTTCCTTCGGGGAGATTCTGTGATCATTGTCCTCCGAAATCCTAAGTAGAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATTGGATTTCTGTGCTTTGGAGCAAAACTTGTAAGCAGCTAGGATTTGGACCAGCTCTGTATAACCTTTCGTATTCGGGAATTTGGCTAGGCAGAACACCACCTTTGATTGCTGTAAGACTTGATATAAGATTTTGATGTTCTGGTATGCTATATACTGTTGTCTTCTTCACAAACTTATTGTAGACGTTGGAGTTTTAACGTTCTTGGTGTGGATGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E243158" ref_strand="+" ref_description="SGN-E243158 [cLEE-2-B2]">
      <seq>ttgatcgaagatgagtcgaccaatggaagaggatgcccctcaagggaaaaatgaggaagaggagttcaatactgggccactttctgtcctcatgatgagtgttaagaataacacacaggtgctcatcaactgtaggaacaacaggaaacttcttggtcgtgtgagagcatttgatcgtcactgcaatatggtgcttgaaaatgttagagaaatgtggactgaggtgcccaagactggaaaaggaaaaaagaaagctgttgctgttaacaaagataggtttatcagcaagatgttccttcggggagattctgtgatcattgtcctccgaaatcctaagtagagaggtgaattggatttctgtgctttggagcaaaacttgtaagcagctaggatttggaccagctctgtataacctttcgtattcgggaatttggctaggcagaacaccacctttgattgctgtaagacttgatataagattttgatgttctggtatgctatatactgttgtcttcttcacaaacttattgtagacgttggagttttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="95255" stop="91739"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94950" g_stop="94926" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="40" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94925" i_stop="93847" i_length="1079">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93846" g_stop="93769" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="118" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93768" i_stop="93510" i_length="259">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93509" g_stop="93405" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="223" r_length="105" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93404" i_stop="93211" i_length="194">
            <donor d_prob="0.639" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93210" g_stop="93090" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="344" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="93089" i_stop="92243" i_length="847">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="92242" g_stop="92038" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="549" r_length="205" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E243158" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243158" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94950" e_stop="94926"/>
          <exon e_start="93846" e_stop="93769"/>
          <exon e_start="93509" e_stop="93405"/>
          <exon e_start="93210" e_stop="93090"/>
          <exon e_start="92242" e_stop="92038"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGACCAATGGAAGAGGATGCCCCTGTAAGTTAGCTTACTTTGCTAGTATTTTGCCCTATACAAAGCTCTCATTGTTTATTTTTCTCATTTTTTCATTGGCATAATCTGTGTTGTGATCTATTTTGTGTTTTAGGGGCTGTCTACTGCTTAGTACTTGTTTTCATTTTCCTTTCTGTTCACCTCAATGCGATGCATTCAATTAGATTTCTTTTGTTGGTAGCCTTGATCCTGCTTTACACGTTACAACTGAAAAGTTTCTAGCATACATCTTTTATTTTATCATATGGAGAATATGTTTATACCTCCCTTTTCAAAGCAAGATCATTGAATTGTTTGATCTGTAGAATATTTTTCAGCACATAACATCAAGTCATTGAATTTTTTTTGGTTAAGTCGTTTGAGTTCACCACTCAAAACAAATGACAAAATCAATTAGAACTTTAAAATAACAATGTAGCTAGGATGAATTTTTCTGTAAAAACTAGAACCTATCAAGTGTAAAAATTATTAGTTGAATTAGTAGAATTTATTTTCTACAGTTGTTTTGTTCCCACCTTCACACAAGTGTTATGTCAGTTTTTCTCATTTACCACATTGGATAACCCAGAAGCTAGGTCCGAACTTTGTAGTTCTCCCTTAACAGACATCCTATTGACATTTTTCTTATATTCTTGGTATGTTTATTTATACATGTACTCTTGTTCATTTTCCATTTGAGTTGCTTCTTGTTTGCCTTCCCGATGCCTAAAGTGCTTAGGTCTAAACTTTGTAGTTCTCCTTTAACAGACATCCTATTGACATTTCGTCTTTTATTCTTGGTATGTTTATTTATACATGTACTCTTGTTGTTCATTTTCCATTTGTGTTGCTTCTTATCTGCCTTCCCGATGTCAAAGTGCTTTGCTTCAAAGTTATCTAGATTAAGCACATAGTGAAAGAGTGTATAATTGGTAGATTATCTAGCTTAAGTACATAGTGAAAAAGTGTATGCCCTTCTATGTTGGTGTGATAGAGGAATGAACCTTATCAGTCCCAGTGAATATGATTTGCTTATCAGATTTTGTGAAAGATGTCTTATGTTTGCCTATGGATCTTTTGTCTAGCAAGGGAAAAATGAGGAAGAGGAGTTCAATACTGGGCCACTTTCTGTCCTCATGATGAGTGTTAAGAATAACACACAGGTATCTAATATCTTTAGCACCTACAACTGTGTCTTTCTTCATGTCGTGTTTATTTATCAATTTTAATTGTTAAAAAGAGAGATAAAATCTATCCTGGAGCCTTGTTTATGTTGACAATTTACTTTTTAAAGTCATGCCGGTATACTTCCTCATTAATCTTAGATTTAAATACTATAGAAAAAGATGCAAGCTTCGGTTTTGTATGTGGAAGGCATCAGCTTTGTGCTTGTTATTTTACAGATATTTTTTCTGGATCTAGGTGCTCATCAACTGTAGGAACAACAGGAAACTTTTTGGTCGTGTGAGAGCATTTGATTGTCACTGCAATATGGTGCTTGAAAATGTTAGAGAAATGTGGACTGAGGTTTGTTTGTTCTTGACTTAATCAACTTTTTGGGACAATGTGTATTGTGTCTTGGATCTGTATCTTGCGTCAAAAAGCTCCAGTTACCAAGATTGTTTATATTATTTTTCAGGTTCCTAAGGGCAATGTGTCTTGGATTTGAAACTTGTACAAAAAGACTCCACTTAACAAAGTTGTTTATGTTTATTCTTCAGGTGCCCAAGACTGGAAAAGGAAAAAAGAAAGCTGTTGCTGTTAACAAAGATAGGTTTATCAGCAAGATGTTCCTTCGGGGAGATTCTGTGATCATTGTCCTCCGAAATCCTAAGTAGAGAGGTACTGTTGGATCTTTGACATAGTGGTTGGAGTAATTTTCTTTGAATTATGAGCTAGTTCCTTTAATTGGTCCATGTTTGAAGTGCAATATCCTTTTAACTTGCTATTATGTAATCAAATGTTTGGTATATAAGAACTGTAAATGCTAAGTAATATTTGTTGAATCCATTATTGTGAAATTTATCAATTTATTATCATAAATAAAATTTGGAACTTCAAAAATGATTAACTCTTAGCATTTAAATAATTGTCTTTTCTGATGAACTATGAAGATCTATAATAAATGAAATATAACGTTCCTATAAATATCAGAAAAATGTGTATACATATGATAGGAAGCTCAAGGTTGGGATCAGGAAACAAACTAGTGGATTAAAATCTGCAAGTTCTATTCTCCAAGTTTAGCTAATGAAGTATGAAGACTGTAAAAATGGTACTGAAAGAACTAACCTCATGCTCGAAAAACTCTCCTGCTAGAGCAGTGCATGGGATTAGGAAGAGCATGAGAACATATATTGTTTTCACTGCTTCCCTTTTATCTCTTGTTGAGCAAAAGATCTATCGGTAACATCATCTCTTACCTTACAAGGTAGGGGAAAGTTTTGTGTACACGTTACCCTCCTCACCAAACCCCACTTGTTGGGATTCATTCTGGGGTTTGTTGTTTTTGGACATATTTCTGTCTGCATACAAAAATGTTCCATTTCGTCTTCTTTTTTCTACTTGAAATGCATTTCTGTGTGGTTATGCACATTCTTAATTTTTCCCTTGGTGTTCCCACATTTTTGTTTGCCTGTATTTAATTATCTGATCGTTGGTAGTAATTCAATACACTTGTGTACTGCAGGTGAATTGGATTTCTGTGCTTTGGAGCAAAACTTGTAAGCAGCTAGGATTTGGACCAGCTCTGTATAACCTTTCGTATTCGGGAATTTGGCTAGGCAGAACACCACCTTTGATTGCTGTAAGACTTGATATAAGATTTTGATGTTCTGGTATGCTATATACTGTTGTCTTCTTCACAAACTTATTGTAGACGTTGGAGTTTTAAC</genome_strand>
        <mrna_strand>TCGACCAATGGAAGAGGATGCCCCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGGAAAAATGAGGAAGAGGAGTTCAATACTGGGCCACTTTCTGTCCTCATGATGAGTGTTAAGAATAACACACAG...................................................................................................................................................................................................................................................................GTGCTCATCAACTGTAGGAACAACAGGAAACTTCTTGGTCGTGTGAGAGCATTTGATCGTCACTGCAATATGGTGCTTGAAAATGTTAGAGAAATGTGGACTGAG..................................................................................................................................................................................................GTGCCCAAGACTGGAAAAGGAAAAAAGAAAGCTGTTGCTGTTAACAAAGATAGGTTTATCAGCAAGATGTTCCTTCGGGGAGATTCTGTGATCATTGTCCTCCGAAATCCTAAGTAGAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATTGGATTTCTGTGCTTTGGAGCAAAACTTGTAAGCAGCTAGGATTTGGACCAGCTCTGTATAACCTTTCGTATTCGGGAATTTGGCTAGGCAGAACACCACCTTTGATTGCTGTAAGACTTGATATAAGATTTTGATGTTCTGGTATGCTATATACTGTTGTCTTCTTCACAAACTTATTGTAGACGTTGGAGTTTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E337942" ref_strand="+" ref_description="SGN-E337942 [cTOE-14-P14]">
      <seq>gaagatgagtcgaccaatggaagaggatgcccctcaagggaaaaatgaggaagaggagttcaatactgggccactttctgtcctcatgatgagtgttaagaataacacacaggtgctcatcaactgtaggaacaacaggaaacttcttggtcgtgtgagagcatttgatcgtcactgcaatatggtgcttgaaaatgttagagaaatgtggactgaggtgcccaagactggaaaaggaaaaaagaaagctgttgctgttaacaaagataggtttatcagcaagatgttccttcggggagattctgtgatcattgtcctccgaaatcctaagtagagaggtgaattggatttctgtgctttggagcaaaacttgtaagcagctaggatttggaccagctctgtataacctttcgtattcgggaatttggctaggcagaacaccacctttgattgctgtaagacttgatataagattttgatgttctggtatgctatatactgttgtcttcttcacaaacttattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="95255" stop="91757"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94950" g_stop="94926" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="34" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94925" i_stop="93847" i_length="1079">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93846" g_stop="93769" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="112" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93768" i_stop="93510" i_length="259">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93509" g_stop="93405" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="217" r_length="105" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93404" i_stop="93211" i_length="194">
            <donor d_prob="0.639" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93210" g_stop="93090" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="338" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="93089" i_stop="92243" i_length="847">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="92242" g_stop="92057" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="524" r_length="186" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E337942" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337942" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94950" e_stop="94926"/>
          <exon e_start="93846" e_stop="93769"/>
          <exon e_start="93509" e_stop="93405"/>
          <exon e_start="93210" e_stop="93090"/>
          <exon e_start="92242" e_stop="92057"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGACCAATGGAAGAGGATGCCCCTGTAAGTTAGCTTACTTTGCTAGTATTTTGCCCTATACAAAGCTCTCATTGTTTATTTTTCTCATTTTTTCATTGGCATAATCTGTGTTGTGATCTATTTTGTGTTTTAGGGGCTGTCTACTGCTTAGTACTTGTTTTCATTTTCCTTTCTGTTCACCTCAATGCGATGCATTCAATTAGATTTCTTTTGTTGGTAGCCTTGATCCTGCTTTACACGTTACAACTGAAAAGTTTCTAGCATACATCTTTTATTTTATCATATGGAGAATATGTTTATACCTCCCTTTTCAAAGCAAGATCATTGAATTGTTTGATCTGTAGAATATTTTTCAGCACATAACATCAAGTCATTGAATTTTTTTTGGTTAAGTCGTTTGAGTTCACCACTCAAAACAAATGACAAAATCAATTAGAACTTTAAAATAACAATGTAGCTAGGATGAATTTTTCTGTAAAAACTAGAACCTATCAAGTGTAAAAATTATTAGTTGAATTAGTAGAATTTATTTTCTACAGTTGTTTTGTTCCCACCTTCACACAAGTGTTATGTCAGTTTTTCTCATTTACCACATTGGATAACCCAGAAGCTAGGTCCGAACTTTGTAGTTCTCCCTTAACAGACATCCTATTGACATTTTTCTTATATTCTTGGTATGTTTATTTATACATGTACTCTTGTTCATTTTCCATTTGAGTTGCTTCTTGTTTGCCTTCCCGATGCCTAAAGTGCTTAGGTCTAAACTTTGTAGTTCTCCTTTAACAGACATCCTATTGACATTTCGTCTTTTATTCTTGGTATGTTTATTTATACATGTACTCTTGTTGTTCATTTTCCATTTGTGTTGCTTCTTATCTGCCTTCCCGATGTCAAAGTGCTTTGCTTCAAAGTTATCTAGATTAAGCACATAGTGAAAGAGTGTATAATTGGTAGATTATCTAGCTTAAGTACATAGTGAAAAAGTGTATGCCCTTCTATGTTGGTGTGATAGAGGAATGAACCTTATCAGTCCCAGTGAATATGATTTGCTTATCAGATTTTGTGAAAGATGTCTTATGTTTGCCTATGGATCTTTTGTCTAGCAAGGGAAAAATGAGGAAGAGGAGTTCAATACTGGGCCACTTTCTGTCCTCATGATGAGTGTTAAGAATAACACACAGGTATCTAATATCTTTAGCACCTACAACTGTGTCTTTCTTCATGTCGTGTTTATTTATCAATTTTAATTGTTAAAAAGAGAGATAAAATCTATCCTGGAGCCTTGTTTATGTTGACAATTTACTTTTTAAAGTCATGCCGGTATACTTCCTCATTAATCTTAGATTTAAATACTATAGAAAAAGATGCAAGCTTCGGTTTTGTATGTGGAAGGCATCAGCTTTGTGCTTGTTATTTTACAGATATTTTTTCTGGATCTAGGTGCTCATCAACTGTAGGAACAACAGGAAACTTTTTGGTCGTGTGAGAGCATTTGATTGTCACTGCAATATGGTGCTTGAAAATGTTAGAGAAATGTGGACTGAGGTTTGTTTGTTCTTGACTTAATCAACTTTTTGGGACAATGTGTATTGTGTCTTGGATCTGTATCTTGCGTCAAAAAGCTCCAGTTACCAAGATTGTTTATATTATTTTTCAGGTTCCTAAGGGCAATGTGTCTTGGATTTGAAACTTGTACAAAAAGACTCCACTTAACAAAGTTGTTTATGTTTATTCTTCAGGTGCCCAAGACTGGAAAAGGAAAAAAGAAAGCTGTTGCTGTTAACAAAGATAGGTTTATCAGCAAGATGTTCCTTCGGGGAGATTCTGTGATCATTGTCCTCCGAAATCCTAAGTAGAGAGGTACTGTTGGATCTTTGACATAGTGGTTGGAGTAATTTTCTTTGAATTATGAGCTAGTTCCTTTAATTGGTCCATGTTTGAAGTGCAATATCCTTTTAACTTGCTATTATGTAATCAAATGTTTGGTATATAAGAACTGTAAATGCTAAGTAATATTTGTTGAATCCATTATTGTGAAATTTATCAATTTATTATCATAAATAAAATTTGGAACTTCAAAAATGATTAACTCTTAGCATTTAAATAATTGTCTTTTCTGATGAACTATGAAGATCTATAATAAATGAAATATAACGTTCCTATAAATATCAGAAAAATGTGTATACATATGATAGGAAGCTCAAGGTTGGGATCAGGAAACAAACTAGTGGATTAAAATCTGCAAGTTCTATTCTCCAAGTTTAGCTAATGAAGTATGAAGACTGTAAAAATGGTACTGAAAGAACTAACCTCATGCTCGAAAAACTCTCCTGCTAGAGCAGTGCATGGGATTAGGAAGAGCATGAGAACATATATTGTTTTCACTGCTTCCCTTTTATCTCTTGTTGAGCAAAAGATCTATCGGTAACATCATCTCTTACCTTACAAGGTAGGGGAAAGTTTTGTGTACACGTTACCCTCCTCACCAAACCCCACTTGTTGGGATTCATTCTGGGGTTTGTTGTTTTTGGACATATTTCTGTCTGCATACAAAAATGTTCCATTTCGTCTTCTTTTTTCTACTTGAAATGCATTTCTGTGTGGTTATGCACATTCTTAATTTTTCCCTTGGTGTTCCCACATTTTTGTTTGCCTGTATTTAATTATCTGATCGTTGGTAGTAATTCAATACACTTGTGTACTGCAGGTGAATTGGATTTCTGTGCTTTGGAGCAAAACTTGTAAGCAGCTAGGATTTGGACCAGCTCTGTATAACCTTTCGTATTCGGGAATTTGGCTAGGCAGAACACCACCTTTGATTGCTGTAAGACTTGATATAAGATTTTGATGTTCTGGTATGCTATATACTGTTGTCTTCTTCACAAACTTATTG</genome_strand>
        <mrna_strand>TCGACCAATGGAAGAGGATGCCCCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGGAAAAATGAGGAAGAGGAGTTCAATACTGGGCCACTTTCTGTCCTCATGATGAGTGTTAAGAATAACACACAG...................................................................................................................................................................................................................................................................GTGCTCATCAACTGTAGGAACAACAGGAAACTTCTTGGTCGTGTGAGAGCATTTGATCGTCACTGCAATATGGTGCTTGAAAATGTTAGAGAAATGTGGACTGAG..................................................................................................................................................................................................GTGCCCAAGACTGGAAAAGGAAAAAAGAAAGCTGTTGCTGTTAACAAAGATAGGTTTATCAGCAAGATGTTCCTTCGGGGAGATTCTGTGATCATTGTCCTCCGAAATCCTAAGTAGAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATTGGATTTCTGTGCTTTGGAGCAAAACTTGTAAGCAGCTAGGATTTGGACCAGCTCTGTATAACCTTTCGTATTCGGGAATTTGGCTAGGCAGAACACCACCTTTGATTGCTGTAAGACTTGATATAAGATTTTGATGTTCTGGTATGCTATATACTGTTGTCTTCTTCACAAACTTATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E305415" ref_strand="+" ref_description="SGN-E305415 [cLEX-15-A18]">
      <seq>tgcttgatcgaagatgagtcgaccaatggaagaggatgcccctcaagggaaaaatgaggaagaggagttcaatactgggccactttctgtcctcatgatgagtgttaagaataacacacaggtgctcatcaactgtaggaacaacaggaaacttcttggtcgtgtgagagcatttgatcgtcactgcaatatggtgcttgaaaatgttagagaaatgtggactgaggtgcccaagactggaaaaggaaaaaagaaagctgttgctgttaacaaagataggtttatcagcaagatgttccttcggggagattctgtgatcattgtcctccgaaatcctaagtagagaggtgaattggatttctgtgctttggagcaaaacttgtaagcagctaggatttggaccagctctgtataacctttcgtattcgggaatttggctaggcagaacaccacctttgattgctgtaagacttgatataagattttgatgttctggtatgctatata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="95255" stop="91783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94950" g_stop="94926" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="43" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94925" i_stop="93847" i_length="1079">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93846" g_stop="93769" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="121" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93768" i_stop="93510" i_length="259">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93509" g_stop="93405" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="226" r_length="105" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93404" i_stop="93211" i_length="194">
            <donor d_prob="0.639" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93210" g_stop="93090" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="347" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="93089" i_stop="92243" i_length="847">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="92242" g_stop="92083" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="507" r_length="160" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E305415" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305415" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94950" e_stop="94926"/>
          <exon e_start="93846" e_stop="93769"/>
          <exon e_start="93509" e_stop="93405"/>
          <exon e_start="93210" e_stop="93090"/>
          <exon e_start="92242" e_stop="92083"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGACCAATGGAAGAGGATGCCCCTGTAAGTTAGCTTACTTTGCTAGTATTTTGCCCTATACAAAGCTCTCATTGTTTATTTTTCTCATTTTTTCATTGGCATAATCTGTGTTGTGATCTATTTTGTGTTTTAGGGGCTGTCTACTGCTTAGTACTTGTTTTCATTTTCCTTTCTGTTCACCTCAATGCGATGCATTCAATTAGATTTCTTTTGTTGGTAGCCTTGATCCTGCTTTACACGTTACAACTGAAAAGTTTCTAGCATACATCTTTTATTTTATCATATGGAGAATATGTTTATACCTCCCTTTTCAAAGCAAGATCATTGAATTGTTTGATCTGTAGAATATTTTTCAGCACATAACATCAAGTCATTGAATTTTTTTTGGTTAAGTCGTTTGAGTTCACCACTCAAAACAAATGACAAAATCAATTAGAACTTTAAAATAACAATGTAGCTAGGATGAATTTTTCTGTAAAAACTAGAACCTATCAAGTGTAAAAATTATTAGTTGAATTAGTAGAATTTATTTTCTACAGTTGTTTTGTTCCCACCTTCACACAAGTGTTATGTCAGTTTTTCTCATTTACCACATTGGATAACCCAGAAGCTAGGTCCGAACTTTGTAGTTCTCCCTTAACAGACATCCTATTGACATTTTTCTTATATTCTTGGTATGTTTATTTATACATGTACTCTTGTTCATTTTCCATTTGAGTTGCTTCTTGTTTGCCTTCCCGATGCCTAAAGTGCTTAGGTCTAAACTTTGTAGTTCTCCTTTAACAGACATCCTATTGACATTTCGTCTTTTATTCTTGGTATGTTTATTTATACATGTACTCTTGTTGTTCATTTTCCATTTGTGTTGCTTCTTATCTGCCTTCCCGATGTCAAAGTGCTTTGCTTCAAAGTTATCTAGATTAAGCACATAGTGAAAGAGTGTATAATTGGTAGATTATCTAGCTTAAGTACATAGTGAAAAAGTGTATGCCCTTCTATGTTGGTGTGATAGAGGAATGAACCTTATCAGTCCCAGTGAATATGATTTGCTTATCAGATTTTGTGAAAGATGTCTTATGTTTGCCTATGGATCTTTTGTCTAGCAAGGGAAAAATGAGGAAGAGGAGTTCAATACTGGGCCACTTTCTGTCCTCATGATGAGTGTTAAGAATAACACACAGGTATCTAATATCTTTAGCACCTACAACTGTGTCTTTCTTCATGTCGTGTTTATTTATCAATTTTAATTGTTAAAAAGAGAGATAAAATCTATCCTGGAGCCTTGTTTATGTTGACAATTTACTTTTTAAAGTCATGCCGGTATACTTCCTCATTAATCTTAGATTTAAATACTATAGAAAAAGATGCAAGCTTCGGTTTTGTATGTGGAAGGCATCAGCTTTGTGCTTGTTATTTTACAGATATTTTTTCTGGATCTAGGTGCTCATCAACTGTAGGAACAACAGGAAACTTTTTGGTCGTGTGAGAGCATTTGATTGTCACTGCAATATGGTGCTTGAAAATGTTAGAGAAATGTGGACTGAGGTTTGTTTGTTCTTGACTTAATCAACTTTTTGGGACAATGTGTATTGTGTCTTGGATCTGTATCTTGCGTCAAAAAGCTCCAGTTACCAAGATTGTTTATATTATTTTTCAGGTTCCTAAGGGCAATGTGTCTTGGATTTGAAACTTGTACAAAAAGACTCCACTTAACAAAGTTGTTTATGTTTATTCTTCAGGTGCCCAAGACTGGAAAAGGAAAAAAGAAAGCTGTTGCTGTTAACAAAGATAGGTTTATCAGCAAGATGTTCCTTCGGGGAGATTCTGTGATCATTGTCCTCCGAAATCCTAAGTAGAGAGGTACTGTTGGATCTTTGACATAGTGGTTGGAGTAATTTTCTTTGAATTATGAGCTAGTTCCTTTAATTGGTCCATGTTTGAAGTGCAATATCCTTTTAACTTGCTATTATGTAATCAAATGTTTGGTATATAAGAACTGTAAATGCTAAGTAATATTTGTTGAATCCATTATTGTGAAATTTATCAATTTATTATCATAAATAAAATTTGGAACTTCAAAAATGATTAACTCTTAGCATTTAAATAATTGTCTTTTCTGATGAACTATGAAGATCTATAATAAATGAAATATAACGTTCCTATAAATATCAGAAAAATGTGTATACATATGATAGGAAGCTCAAGGTTGGGATCAGGAAACAAACTAGTGGATTAAAATCTGCAAGTTCTATTCTCCAAGTTTAGCTAATGAAGTATGAAGACTGTAAAAATGGTACTGAAAGAACTAACCTCATGCTCGAAAAACTCTCCTGCTAGAGCAGTGCATGGGATTAGGAAGAGCATGAGAACATATATTGTTTTCACTGCTTCCCTTTTATCTCTTGTTGAGCAAAAGATCTATCGGTAACATCATCTCTTACCTTACAAGGTAGGGGAAAGTTTTGTGTACACGTTACCCTCCTCACCAAACCCCACTTGTTGGGATTCATTCTGGGGTTTGTTGTTTTTGGACATATTTCTGTCTGCATACAAAAATGTTCCATTTCGTCTTCTTTTTTCTACTTGAAATGCATTTCTGTGTGGTTATGCACATTCTTAATTTTTCCCTTGGTGTTCCCACATTTTTGTTTGCCTGTATTTAATTATCTGATCGTTGGTAGTAATTCAATACACTTGTGTACTGCAGGTGAATTGGATTTCTGTGCTTTGGAGCAAAACTTGTAAGCAGCTAGGATTTGGACCAGCTCTGTATAACCTTTCGTATTCGGGAATTTGGCTAGGCAGAACACCACCTTTGATTGCTGTAAGACTTGATATAAGATTTTGATGTTCTGGTATGCTATATA</genome_strand>
        <mrna_strand>TCGACCAATGGAAGAGGATGCCCCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGGAAAAATGAGGAAGAGGAGTTCAATACTGGGCCACTTTCTGTCCTCATGATGAGTGTTAAGAATAACACACAG...................................................................................................................................................................................................................................................................GTGCTCATCAACTGTAGGAACAACAGGAAACTTCTTGGTCGTGTGAGAGCATTTGATCGTCACTGCAATATGGTGCTTGAAAATGTTAGAGAAATGTGGACTGAG..................................................................................................................................................................................................GTGCCCAAGACTGGAAAAGGAAAAAAGAAAGCTGTTGCTGTTAACAAAGATAGGTTTATCAGCAAGATGTTCCTTCGGGGAGATTCTGTGATCATTGTCCTCCGAAATCCTAAGTAGAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATTGGATTTCTGTGCTTTGGAGCAAAACTTGTAAGCAGCTAGGATTTGGACCAGCTCTGTATAACCTTTCGTATTCGGGAATTTGGCTAGGCAGAACACCACCTTTGATTGCTGTAAGACTTGATATAAGATTTTGATGTTCTGGTATGCTATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E286605" ref_strand="-" ref_description="SGN-E286605 [cLES-12-E18]">
      <seq>tttctgtcctcatgatgagtgttaagaataacacacaggtgctcatcaactgtaggaacaacaggaaacttcttggtcgtgtgagagcatttgatcgtcactgcaatatggtgcttgaaaatgttagagaaatgtggactgaggtgcccaagactggaaaaggaaaaaagaaagctgttgctgttaacaaagataggtttatcagcaagatgttccttcggggagattctgtgatcattgtcctccgaaatcctaagtagagaggtgaattggatttctgtgctttggagcaaaacttgtaagcagctaggatttggaccagctctgtataacctttcgtattcgggaatttggctaggcagaacaccacctttgattgctgtaagacttgatataagattttgatgttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="94106" stop="91797"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93806" g_stop="93769" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93768" i_stop="93510" i_length="259">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.963" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93509" g_stop="93405" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="143" r_length="105" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93404" i_stop="93211" i_length="194">
            <donor d_prob="0.639" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93210" g_stop="93090" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="264" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93089" i_stop="92243" i_length="847">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92242" g_stop="92097" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="410" r_length="146" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E286605" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>410</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286605" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="93806" e_stop="93769"/>
          <exon e_start="93509" e_stop="93405"/>
          <exon e_start="93210" e_stop="93090"/>
          <exon e_start="92242" e_stop="92097"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTGTCCTCATGATGAGTGTTAAGAATAACACACAGGTATCTAATATCTTTAGCACCTACAACTGTGTCTTTCTTCATGTCGTGTTTATTTATCAATTTTAATTGTTAAAAAGAGAGATAAAATCTATCCTGGAGCCTTGTTTATGTTGACAATTTACTTTTTAAAGTCATGCCGGTATACTTCCTCATTAATCTTAGATTTAAATACTATAGAAAAAGATGCAAGCTTCGGTTTTGTATGTGGAAGGCATCAGCTTTGTGCTTGTTATTTTACAGATATTTTTTCTGGATCTAGGTGCTCATCAACTGTAGGAACAACAGGAAACTTTTTGGTCGTGTGAGAGCATTTGATTGTCACTGCAATATGGTGCTTGAAAATGTTAGAGAAATGTGGACTGAGGTTTGTTTGTTCTTGACTTAATCAACTTTTTGGGACAATGTGTATTGTGTCTTGGATCTGTATCTTGCGTCAAAAAGCTCCAGTTACCAAGATTGTTTATATTATTTTTCAGGTTCCTAAGGGCAATGTGTCTTGGATTTGAAACTTGTACAAAAAGACTCCACTTAACAAAGTTGTTTATGTTTATTCTTCAGGTGCCCAAGACTGGAAAAGGAAAAAAGAAAGCTGTTGCTGTTAACAAAGATAGGTTTATCAGCAAGATGTTCCTTCGGGGAGATTCTGTGATCATTGTCCTCCGAAATCCTAAGTAGAGAGGTACTGTTGGATCTTTGACATAGTGGTTGGAGTAATTTTCTTTGAATTATGAGCTAGTTCCTTTAATTGGTCCATGTTTGAAGTGCAATATCCTTTTAACTTGCTATTATGTAATCAAATGTTTGGTATATAAGAACTGTAAATGCTAAGTAATATTTGTTGAATCCATTATTGTGAAATTTATCAATTTATTATCATAAATAAAATTTGGAACTTCAAAAATGATTAACTCTTAGCATTTAAATAATTGTCTTTTCTGATGAACTATGAAGATCTATAATAAATGAAATATAACGTTCCTATAAATATCAGAAAAATGTGTATACATATGATAGGAAGCTCAAGGTTGGGATCAGGAAACAAACTAGTGGATTAAAATCTGCAAGTTCTATTCTCCAAGTTTAGCTAATGAAGTATGAAGACTGTAAAAATGGTACTGAAAGAACTAACCTCATGCTCGAAAAACTCTCCTGCTAGAGCAGTGCATGGGATTAGGAAGAGCATGAGAACATATATTGTTTTCACTGCTTCCCTTTTATCTCTTGTTGAGCAAAAGATCTATCGGTAACATCATCTCTTACCTTACAAGGTAGGGGAAAGTTTTGTGTACACGTTACCCTCCTCACCAAACCCCACTTGTTGGGATTCATTCTGGGGTTTGTTGTTTTTGGACATATTTCTGTCTGCATACAAAAATGTTCCATTTCGTCTTCTTTTTTCTACTTGAAATGCATTTCTGTGTGGTTATGCACATTCTTAATTTTTCCCTTGGTGTTCCCACATTTTTGTTTGCCTGTATTTAATTATCTGATCGTTGGTAGTAATTCAATACACTTGTGTACTGCAGGTGAATTGGATTTCTGTGCTTTGGAGCAAAACTTGTAAGCAGCTAGGATTTGGACCAGCTCTGTATAACCTTTCGTATTCGGGAATTTGGCTAGGCAGAACACCACCTTTGATTGCTGTAAGACTTGATATAAGATTTTGATGTTC</genome_strand>
        <mrna_strand>TTTCTGTCCTCATGATGAGTGTTAAGAATAACACACAG...................................................................................................................................................................................................................................................................GTGCTCATCAACTGTAGGAACAACAGGAAACTTCTTGGTCGTGTGAGAGCATTTGATCGTCACTGCAATATGGTGCTTGAAAATGTTAGAGAAATGTGGACTGAG..................................................................................................................................................................................................GTGCCCAAGACTGGAAAAGGAAAAAAGAAAGCTGTTGCTGTTAACAAAGATAGGTTTATCAGCAAGATGTTCCTTCGGGGAGATTCTGTGATCATTGTCCTCCGAAATCCTAAGTAGAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATTGGATTTCTGTGCTTTGGAGCAAAACTTGTAAGCAGCTAGGATTTGGACCAGCTCTGTATAACCTTTCGTATTCGGGAATTTGGCTAGGCAGAACACCACCTTTGATTGCTGTAAGACTTGATATAAGATTTTGATGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E200469" ref_strand="+" ref_description="SGN-E200469 [cLEB-8-N3]">
      <seq>gcacgaggaccaatggaagaggatgcccctcaagggaaaaatgaggaagaggagttcaatactgggccactttctgtcctcatgatgagtgttaagaataacacacaggtgctcatcaactgtaggaacaacaggaaacttcttggtcgtgtgagagcatttgatcgtcactgcaatatggtgcttgaaaatgttagagaaatgtggactgaggtgcccaagactggaaaaggaaaaaagaaagctgttgctgttaacaaagataggtttatcagcaagatgttccttcggggagattctgtgatcattgtcctccgaaatcctaagaggagaggtgaattggatttctgtgctttggagcaaaacttgtaagcagctaggatttggaccagctctgtataaccttttcttattcgggaatttggctaggcagaacaccacctttgattgctgtaagacttgata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="95254" stop="91813"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94950" g_stop="94926" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="30" r_length="25" r_score="0.920"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94925" i_stop="93847" i_length="1079">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93846" g_stop="93769" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="108" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93768" i_stop="93510" i_length="259">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93509" g_stop="93405" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="213" r_length="105" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93404" i_stop="93211" i_length="194">
            <donor d_prob="0.639" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93210" g_stop="93090" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="334" r_length="121" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="93089" i_stop="92243" i_length="847">
            <donor d_prob="0.952" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="92242" g_stop="92113" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="465" r_length="131" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E200469" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200469" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94950" e_stop="94926"/>
          <exon e_start="93846" e_stop="93769"/>
          <exon e_start="93509" e_stop="93405"/>
          <exon e_start="93210" e_stop="93090"/>
          <exon e_start="92242" e_stop="92113"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGACCAATGGAAGAGGATGCCCCTGTAAGTTAGCTTACTTTGCTAGTATTTTGCCCTATACAAAGCTCTCATTGTTTATTTTTCTCATTTTTTCATTGGCATAATCTGTGTTGTGATCTATTTTGTGTTTTAGGGGCTGTCTACTGCTTAGTACTTGTTTTCATTTTCCTTTCTGTTCACCTCAATGCGATGCATTCAATTAGATTTCTTTTGTTGGTAGCCTTGATCCTGCTTTACACGTTACAACTGAAAAGTTTCTAGCATACATCTTTTATTTTATCATATGGAGAATATGTTTATACCTCCCTTTTCAAAGCAAGATCATTGAATTGTTTGATCTGTAGAATATTTTTCAGCACATAACATCAAGTCATTGAATTTTTTTTGGTTAAGTCGTTTGAGTTCACCACTCAAAACAAATGACAAAATCAATTAGAACTTTAAAATAACAATGTAGCTAGGATGAATTTTTCTGTAAAAACTAGAACCTATCAAGTGTAAAAATTATTAGTTGAATTAGTAGAATTTATTTTCTACAGTTGTTTTGTTCCCACCTTCACACAAGTGTTATGTCAGTTTTTCTCATTTACCACATTGGATAACCCAGAAGCTAGGTCCGAACTTTGTAGTTCTCCCTTAACAGACATCCTATTGACATTTTTCTTATATTCTTGGTATGTTTATTTATACATGTACTCTTGTTCATTTTCCATTTGAGTTGCTTCTTGTTTGCCTTCCCGATGCCTAAAGTGCTTAGGTCTAAACTTTGTAGTTCTCCTTTAACAGACATCCTATTGACATTTCGTCTTTTATTCTTGGTATGTTTATTTATACATGTACTCTTGTTGTTCATTTTCCATTTGTGTTGCTTCTTATCTGCCTTCCCGATGTCAAAGTGCTTTGCTTCAAAGTTATCTAGATTAAGCACATAGTGAAAGAGTGTATAATTGGTAGATTATCTAGCTTAAGTACATAGTGAAAAAGTGTATGCCCTTCTATGTTGGTGTGATAGAGGAATGAACCTTATCAGTCCCAGTGAATATGATTTGCTTATCAGATTTTGTGAAAGATGTCTTATGTTTGCCTATGGATCTTTTGTCTAGCAAGGGAAAAATGAGGAAGAGGAGTTCAATACTGGGCCACTTTCTGTCCTCATGATGAGTGTTAAGAATAACACACAGGTATCTAATATCTTTAGCACCTACAACTGTGTCTTTCTTCATGTCGTGTTTATTTATCAATTTTAATTGTTAAAAAGAGAGATAAAATCTATCCTGGAGCCTTGTTTATGTTGACAATTTACTTTTTAAAGTCATGCCGGTATACTTCCTCATTAATCTTAGATTTAAATACTATAGAAAAAGATGCAAGCTTCGGTTTTGTATGTGGAAGGCATCAGCTTTGTGCTTGTTATTTTACAGATATTTTTTCTGGATCTAGGTGCTCATCAACTGTAGGAACAACAGGAAACTTTTTGGTCGTGTGAGAGCATTTGATTGTCACTGCAATATGGTGCTTGAAAATGTTAGAGAAATGTGGACTGAGGTTTGTTTGTTCTTGACTTAATCAACTTTTTGGGACAATGTGTATTGTGTCTTGGATCTGTATCTTGCGTCAAAAAGCTCCAGTTACCAAGATTGTTTATATTATTTTTCAGGTTCCTAAGGGCAATGTGTCTTGGATTTGAAACTTGTACAAAAAGACTCCACTTAACAAAGTTGTTTATGTTTATTCTTCAGGTGCCCAAGACTGGAAAAGGAAAAAAGAAAGCTGTTGCTGTTAACAAAGATAGGTTTATCAGCAAGATGTTCCTTCGGGGAGATTCTGTGATCATTGTCCTCCGAAATCCTAAGTAGAGAGGTACTGTTGGATCTTTGACATAGTGGTTGGAGTAATTTTCTTTGAATTATGAGCTAGTTCCTTTAATTGGTCCATGTTTGAAGTGCAATATCCTTTTAACTTGCTATTATGTAATCAAATGTTTGGTATATAAGAACTGTAAATGCTAAGTAATATTTGTTGAATCCATTATTGTGAAATTTATCAATTTATTATCATAAATAAAATTTGGAACTTCAAAAATGATTAACTCTTAGCATTTAAATAATTGTCTTTTCTGATGAACTATGAAGATCTATAATAAATGAAATATAACGTTCCTATAAATATCAGAAAAATGTGTATACATATGATAGGAAGCTCAAGGTTGGGATCAGGAAACAAACTAGTGGATTAAAATCTGCAAGTTCTATTCTCCAAGTTTAGCTAATGAAGTATGAAGACTGTAAAAATGGTACTGAAAGAACTAACCTCATGCTCGAAAAACTCTCCTGCTAGAGCAGTGCATGGGATTAGGAAGAGCATGAGAACATATATTGTTTTCACTGCTTCCCTTTTATCTCTTGTTGAGCAAAAGATCTATCGGTAACATCATCTCTTACCTTACAAGGTAGGGGAAAGTTTTGTGTACACGTTACCCTCCTCACCAAACCCCACTTGTTGGGATTCATTCTGGGGTTTGTTGTTTTTGGACATATTTCTGTCTGCATACAAAAATGTTCCATTTCGTCTTCTTTTTTCTACTTGAAATGCATTTCTGTGTGGTTATGCACATTCTTAATTTTTCCCTTGGTGTTCCCACATTTTTGTTTGCCTGTATTTAATTATCTGATCGTTGGTAGTAATTCAATACACTTGTGTACTGCAGGTGAATTGGATTTCTGTGCTTTGGAGCAAAACTTGTAAGCAGCTAGGATTTGGACCAGCTCTGTATAACC-TTTCGTATTCGGGAATTTGGCTAGGCAGAACACCACCTTTGATTGCTGTAAGACTTGATA</genome_strand>
        <mrna_strand>AGGACCAATGGAAGAGGATGCCCCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGGAAAAATGAGGAAGAGGAGTTCAATACTGGGCCACTTTCTGTCCTCATGATGAGTGTTAAGAATAACACACAG...................................................................................................................................................................................................................................................................GTGCTCATCAACTGTAGGAACAACAGGAAACTTCTTGGTCGTGTGAGAGCATTTGATCGTCACTGCAATATGGTGCTTGAAAATGTTAGAGAAATGTGGACTGAG..................................................................................................................................................................................................GTGCCCAAGACTGGAAAAGGAAAAAAGAAAGCTGTTGCTGTTAACAAAGATAGGTTTATCAGCAAGATGTTCCTTCGGGGAGATTCTGTGATCATTGTCCTCCGAAATCCTAAGAGGAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATTGGATTTCTGTGCTTTGGAGCAAAACTTGTAAGCAGCTAGGATTTGGACCAGCTCTGTATAACCTTTTCTTATTCGGGAATTTGGCTAGGCAGAACACCACCTTTGATTGCTGTAAGACTTGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E319317" ref_strand="+" ref_description="SGN-E319317 [cTOB-16-L16]">
      <seq>cctctttaaaccctagctcctttgcccacttttttttgttgctcttcaatttcttctgcttgatcgaagatgagtcgaccaatggaagaggatgcccctcaagggaaaaatgaggaagaggagttcaatactgggccactttctgtcctcatgatgagtgttaagaataacacacaggtgctcatcaactgtaggaacaacaggaaacttcttggtcgtgtgagagcatttgatcgtcactgcaatatggtgcttgaaaatgttagagaaatgtggactgaggtgcccaagactggaaaaggaaaaaagaaagctgttgctgttaacaaagataggtttatcagcaagatgttccttcggggagattctgtgatcattgtcctccgaaatcctaagtagagaggtgaattggatttctgtgctttggagcaaaacttgtaagcagctaggatttggaccagctctgtataacctttcgtattcgggaatttggctaggcagaacaccacctttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="96056" stop="91831"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95756" g_stop="95683" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95682" i_stop="94951" i_length="732">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94950" g_stop="94926" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="99" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94925" i_stop="93847" i_length="1079">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93846" g_stop="93769" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="177" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93768" i_stop="93510" i_length="259">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93509" g_stop="93405" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="282" r_length="105" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="93404" i_stop="93211" i_length="194">
            <donor d_prob="0.639" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93210" g_stop="93090" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="403" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="93089" i_stop="92243" i_length="847">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="92242" g_stop="92131" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="515" r_length="112" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E319317" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319317" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95756" e_stop="95683"/>
          <exon e_start="94950" e_stop="94926"/>
          <exon e_start="93846" e_stop="93769"/>
          <exon e_start="93509" e_stop="93405"/>
          <exon e_start="93210" e_stop="93090"/>
          <exon e_start="92242" e_stop="92131"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTTTAAACCCTAGCTCCTTTGCCCACTTTTTTTTGTTGCTCTTCAATTTCTTCTGCTTGATCGAAGATGAGGTAATGGTTTACTGCTATTTTACACTTTGCCTTTGTACATTTGAAGTTCTTCAATTTTCTCTGTTTGATTTTTTCTCGTCATTGCAGTAACCTATTTAGTAGATTATGTAATGTTATTGTTAATCAAAGAAGTAGATAATTTTCCCTAGGTAAAGTAAGTTATTGGACGAGGAGATGAGAAATTGAAGAATTTTAGCTGTTTTCTGGACTAATTTTGTGTAGTTTTTTTTTTTTTTGGGTATTGCGTGCTTTTGGAAGTTTAAATTAGAGTGAGTAGATTCATATAACTGAAGGCAACTAGCTTGGCGTGAAGGCCTGGAATGTTTCTTTTTTCGAGTTCTATATGCAGTTTAAACACTATGCTAATTGGGTTTCATGTAGCTAAACAATTGTAAAGTTGGATTTTCGAGTAATTCAGTCTTCTCTAGCCCTTTATTACTACTGATCTTAGTTCTTTTTGTTCACTCTCTACTATATCCAAGCTTAAAACCTATGTTATTCCGTGCACATCAGTAATAGAACCCTTATATTGTCTAGAATACTAGGATAACAAGGCTGTAAGATGTACAAATAGAATTAAGAAAAAACTAGGTCAGTGTCTCATGTTTTTGTTGTTCATTGCTGATGTATTTCTCTATTCCTGTTGATTTTAGTGTTACCCAAATATTAGTAAGTGGAAGTTTCTAATTGTTTTGCTTTTTCTTTTTCTTTTCTATTTGTGCTCTTTTGCAGTCGACCAATGGAAGAGGATGCCCCTGTAAGTTAGCTTACTTTGCTAGTATTTTGCCCTATACAAAGCTCTCATTGTTTATTTTTCTCATTTTTTCATTGGCATAATCTGTGTTGTGATCTATTTTGTGTTTTAGGGGCTGTCTACTGCTTAGTACTTGTTTTCATTTTCCTTTCTGTTCACCTCAATGCGATGCATTCAATTAGATTTCTTTTGTTGGTAGCCTTGATCCTGCTTTACACGTTACAACTGAAAAGTTTCTAGCATACATCTTTTATTTTATCATATGGAGAATATGTTTATACCTCCCTTTTCAAAGCAAGATCATTGAATTGTTTGATCTGTAGAATATTTTTCAGCACATAACATCAAGTCATTGAATTTTTTTTGGTTAAGTCGTTTGAGTTCACCACTCAAAACAAATGACAAAATCAATTAGAACTTTAAAATAACAATGTAGCTAGGATGAATTTTTCTGTAAAAACTAGAACCTATCAAGTGTAAAAATTATTAGTTGAATTAGTAGAATTTATTTTCTACAGTTGTTTTGTTCCCACCTTCACACAAGTGTTATGTCAGTTTTTCTCATTTACCACATTGGATAACCCAGAAGCTAGGTCCGAACTTTGTAGTTCTCCCTTAACAGACATCCTATTGACATTTTTCTTATATTCTTGGTATGTTTATTTATACATGTACTCTTGTTCATTTTCCATTTGAGTTGCTTCTTGTTTGCCTTCCCGATGCCTAAAGTGCTTAGGTCTAAACTTTGTAGTTCTCCTTTAACAGACATCCTATTGACATTTCGTCTTTTATTCTTGGTATGTTTATTTATACATGTACTCTTGTTGTTCATTTTCCATTTGTGTTGCTTCTTATCTGCCTTCCCGATGTCAAAGTGCTTTGCTTCAAAGTTATCTAGATTAAGCACATAGTGAAAGAGTGTATAATTGGTAGATTATCTAGCTTAAGTACATAGTGAAAAAGTGTATGCCCTTCTATGTTGGTGTGATAGAGGAATGAACCTTATCAGTCCCAGTGAATATGATTTGCTTATCAGATTTTGTGAAAGATGTCTTATGTTTGCCTATGGATCTTTTGTCTAGCAAGGGAAAAATGAGGAAGAGGAGTTCAATACTGGGCCACTTTCTGTCCTCATGATGAGTGTTAAGAATAACACACAGGTATCTAATATCTTTAGCACCTACAACTGTGTCTTTCTTCATGTCGTGTTTATTTATCAATTTTAATTGTTAAAAAGAGAGATAAAATCTATCCTGGAGCCTTGTTTATGTTGACAATTTACTTTTTAAAGTCATGCCGGTATACTTCCTCATTAATCTTAGATTTAAATACTATAGAAAAAGATGCAAGCTTCGGTTTTGTATGTGGAAGGCATCAGCTTTGTGCTTGTTATTTTACAGATATTTTTTCTGGATCTAGGTGCTCATCAACTGTAGGAACAACAGGAAACTTTTTGGTCGTGTGAGAGCATTTGATTGTCACTGCAATATGGTGCTTGAAAATGTTAGAGAAATGTGGACTGAGGTTTGTTTGTTCTTGACTTAATCAACTTTTTGGGACAATGTGTATTGTGTCTTGGATCTGTATCTTGCGTCAAAAAGCTCCAGTTACCAAGATTGTTTATATTATTTTTCAGGTTCCTAAGGGCAATGTGTCTTGGATTTGAAACTTGTACAAAAAGACTCCACTTAACAAAGTTGTTTATGTTTATTCTTCAGGTGCCCAAGACTGGAAAAGGAAAAAAGAAAGCTGTTGCTGTTAACAAAGATAGGTTTATCAGCAAGATGTTCCTTCGGGGAGATTCTGTGATCATTGTCCTCCGAAATCCTAAGTAGAGAGGTACTGTTGGATCTTTGACATAGTGGTTGGAGTAATTTTCTTTGAATTATGAGCTAGTTCCTTTAATTGGTCCATGTTTGAAGTGCAATATCCTTTTAACTTGCTATTATGTAATCAAATGTTTGGTATATAAGAACTGTAAATGCTAAGTAATATTTGTTGAATCCATTATTGTGAAATTTATCAATTTATTATCATAAATAAAATTTGGAACTTCAAAAATGATTAACTCTTAGCATTTAAATAATTGTCTTTTCTGATGAACTATGAAGATCTATAATAAATGAAATATAACGTTCCTATAAATATCAGAAAAATGTGTATACATATGATAGGAAGCTCAAGGTTGGGATCAGGAAACAAACTAGTGGATTAAAATCTGCAAGTTCTATTCTCCAAGTTTAGCTAATGAAGTATGAAGACTGTAAAAATGGTACTGAAAGAACTAACCTCATGCTCGAAAAACTCTCCTGCTAGAGCAGTGCATGGGATTAGGAAGAGCATGAGAACATATATTGTTTTCACTGCTTCCCTTTTATCTCTTGTTGAGCAAAAGATCTATCGGTAACATCATCTCTTACCTTACAAGGTAGGGGAAAGTTTTGTGTACACGTTACCCTCCTCACCAAACCCCACTTGTTGGGATTCATTCTGGGGTTTGTTGTTTTTGGACATATTTCTGTCTGCATACAAAAATGTTCCATTTCGTCTTCTTTTTTCTACTTGAAATGCATTTCTGTGTGGTTATGCACATTCTTAATTTTTCCCTTGGTGTTCCCACATTTTTGTTTGCCTGTATTTAATTATCTGATCGTTGGTAGTAATTCAATACACTTGTGTACTGCAGGTGAATTGGATTTCTGTGCTTTGGAGCAAAACTTGTAAGCAGCTAGGATTTGGACCAGCTCTGTATAACCTTTCGTATTCGGGAATTTGGCTAGGCAGAACACCACCTTTGA</genome_strand>
        <mrna_strand>CCTCTTTAAACCCTAGCTCCTTTGCCCACTTTTTTTTGTTGCTCTTCAATTTCTTCTGCTTGATCGAAGATGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGACCAATGGAAGAGGATGCCCCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGGAAAAATGAGGAAGAGGAGTTCAATACTGGGCCACTTTCTGTCCTCATGATGAGTGTTAAGAATAACACACAG...................................................................................................................................................................................................................................................................GTGCTCATCAACTGTAGGAACAACAGGAAACTTCTTGGTCGTGTGAGAGCATTTGATCGTCACTGCAATATGGTGCTTGAAAATGTTAGAGAAATGTGGACTGAG..................................................................................................................................................................................................GTGCCCAAGACTGGAAAAGGAAAAAAGAAAGCTGTTGCTGTTAACAAAGATAGGTTTATCAGCAAGATGTTCCTTCGGGGAGATTCTGTGATCATTGTCCTCCGAAATCCTAAGTAGAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATTGGATTTCTGTGCTTTGGAGCAAAACTTGTAAGCAGCTAGGATTTGGACCAGCTCTGTATAACCTTTCGTATTCGGGAATTTGGCTAGGCAGAACACCACCTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E283750" ref_strand="+" ref_description="SGN-E283750 [cLES-1-K1]">
      <seq>tctgcttgatcgaagatgagtcgaccaatggaagaggatgcccctcaagggaaaaatgaggaagaggagttcaatactgggccactttctgtcctcatgatgagtgttaagaataacacacaggtgctcatcaactgtaggaacaacaggaaacttcttggtcgtgtgagagcatttgatcgtcactgcaatatggtgcttgaaaatgttagagaaatgtggactgaggtgcccaagactggaaaaggaaaaaagaaagctgttgctgttaacaaagataggtttatcagcaagatgttccttcggggagattctgtgatcattgtcctccgaaatcctaagtagagaggtgaattggatttctgtgctttggagcaaaacttgtaagcagctaggatttggaccagctctgtataacctttcgtattcgggaatttggctaggcagaacaccacctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="96002" stop="91834"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95702" g_stop="95683" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95682" i_stop="94951" i_length="732">
            <donor d_prob="0.950" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94950" g_stop="94926" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="45" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94925" i_stop="93847" i_length="1079">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93846" g_stop="93769" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="123" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93768" i_stop="93510" i_length="259">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93509" g_stop="93405" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="228" r_length="105" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="93404" i_stop="93211" i_length="194">
            <donor d_prob="0.639" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93210" g_stop="93090" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="349" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="93089" i_stop="92243" i_length="847">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="92242" g_stop="92134" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="458" r_length="109" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E283750" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283750" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95702" e_stop="95683"/>
          <exon e_start="94950" e_stop="94926"/>
          <exon e_start="93846" e_stop="93769"/>
          <exon e_start="93509" e_stop="93405"/>
          <exon e_start="93210" e_stop="93090"/>
          <exon e_start="92242" e_stop="92134"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGCTTGATCGAAGATGAGGTAATGGTTTACTGCTATTTTACACTTTGCCTTTGTACATTTGAAGTTCTTCAATTTTCTCTGTTTGATTTTTTCTCGTCATTGCAGTAACCTATTTAGTAGATTATGTAATGTTATTGTTAATCAAAGAAGTAGATAATTTTCCCTAGGTAAAGTAAGTTATTGGACGAGGAGATGAGAAATTGAAGAATTTTAGCTGTTTTCTGGACTAATTTTGTGTAGTTTTTTTTTTTTTTGGGTATTGCGTGCTTTTGGAAGTTTAAATTAGAGTGAGTAGATTCATATAACTGAAGGCAACTAGCTTGGCGTGAAGGCCTGGAATGTTTCTTTTTTCGAGTTCTATATGCAGTTTAAACACTATGCTAATTGGGTTTCATGTAGCTAAACAATTGTAAAGTTGGATTTTCGAGTAATTCAGTCTTCTCTAGCCCTTTATTACTACTGATCTTAGTTCTTTTTGTTCACTCTCTACTATATCCAAGCTTAAAACCTATGTTATTCCGTGCACATCAGTAATAGAACCCTTATATTGTCTAGAATACTAGGATAACAAGGCTGTAAGATGTACAAATAGAATTAAGAAAAAACTAGGTCAGTGTCTCATGTTTTTGTTGTTCATTGCTGATGTATTTCTCTATTCCTGTTGATTTTAGTGTTACCCAAATATTAGTAAGTGGAAGTTTCTAATTGTTTTGCTTTTTCTTTTTCTTTTCTATTTGTGCTCTTTTGCAGTCGACCAATGGAAGAGGATGCCCCTGTAAGTTAGCTTACTTTGCTAGTATTTTGCCCTATACAAAGCTCTCATTGTTTATTTTTCTCATTTTTTCATTGGCATAATCTGTGTTGTGATCTATTTTGTGTTTTAGGGGCTGTCTACTGCTTAGTACTTGTTTTCATTTTCCTTTCTGTTCACCTCAATGCGATGCATTCAATTAGATTTCTTTTGTTGGTAGCCTTGATCCTGCTTTACACGTTACAACTGAAAAGTTTCTAGCATACATCTTTTATTTTATCATATGGAGAATATGTTTATACCTCCCTTTTCAAAGCAAGATCATTGAATTGTTTGATCTGTAGAATATTTTTCAGCACATAACATCAAGTCATTGAATTTTTTTTGGTTAAGTCGTTTGAGTTCACCACTCAAAACAAATGACAAAATCAATTAGAACTTTAAAATAACAATGTAGCTAGGATGAATTTTTCTGTAAAAACTAGAACCTATCAAGTGTAAAAATTATTAGTTGAATTAGTAGAATTTATTTTCTACAGTTGTTTTGTTCCCACCTTCACACAAGTGTTATGTCAGTTTTTCTCATTTACCACATTGGATAACCCAGAAGCTAGGTCCGAACTTTGTAGTTCTCCCTTAACAGACATCCTATTGACATTTTTCTTATATTCTTGGTATGTTTATTTATACATGTACTCTTGTTCATTTTCCATTTGAGTTGCTTCTTGTTTGCCTTCCCGATGCCTAAAGTGCTTAGGTCTAAACTTTGTAGTTCTCCTTTAACAGACATCCTATTGACATTTCGTCTTTTATTCTTGGTATGTTTATTTATACATGTACTCTTGTTGTTCATTTTCCATTTGTGTTGCTTCTTATCTGCCTTCCCGATGTCAAAGTGCTTTGCTTCAAAGTTATCTAGATTAAGCACATAGTGAAAGAGTGTATAATTGGTAGATTATCTAGCTTAAGTACATAGTGAAAAAGTGTATGCCCTTCTATGTTGGTGTGATAGAGGAATGAACCTTATCAGTCCCAGTGAATATGATTTGCTTATCAGATTTTGTGAAAGATGTCTTATGTTTGCCTATGGATCTTTTGTCTAGCAAGGGAAAAATGAGGAAGAGGAGTTCAATACTGGGCCACTTTCTGTCCTCATGATGAGTGTTAAGAATAACACACAGGTATCTAATATCTTTAGCACCTACAACTGTGTCTTTCTTCATGTCGTGTTTATTTATCAATTTTAATTGTTAAAAAGAGAGATAAAATCTATCCTGGAGCCTTGTTTATGTTGACAATTTACTTTTTAAAGTCATGCCGGTATACTTCCTCATTAATCTTAGATTTAAATACTATAGAAAAAGATGCAAGCTTCGGTTTTGTATGTGGAAGGCATCAGCTTTGTGCTTGTTATTTTACAGATATTTTTTCTGGATCTAGGTGCTCATCAACTGTAGGAACAACAGGAAACTTTTTGGTCGTGTGAGAGCATTTGATTGTCACTGCAATATGGTGCTTGAAAATGTTAGAGAAATGTGGACTGAGGTTTGTTTGTTCTTGACTTAATCAACTTTTTGGGACAATGTGTATTGTGTCTTGGATCTGTATCTTGCGTCAAAAAGCTCCAGTTACCAAGATTGTTTATATTATTTTTCAGGTTCCTAAGGGCAATGTGTCTTGGATTTGAAACTTGTACAAAAAGACTCCACTTAACAAAGTTGTTTATGTTTATTCTTCAGGTGCCCAAGACTGGAAAAGGAAAAAAGAAAGCTGTTGCTGTTAACAAAGATAGGTTTATCAGCAAGATGTTCCTTCGGGGAGATTCTGTGATCATTGTCCTCCGAAATCCTAAGTAGAGAGGTACTGTTGGATCTTTGACATAGTGGTTGGAGTAATTTTCTTTGAATTATGAGCTAGTTCCTTTAATTGGTCCATGTTTGAAGTGCAATATCCTTTTAACTTGCTATTATGTAATCAAATGTTTGGTATATAAGAACTGTAAATGCTAAGTAATATTTGTTGAATCCATTATTGTGAAATTTATCAATTTATTATCATAAATAAAATTTGGAACTTCAAAAATGATTAACTCTTAGCATTTAAATAATTGTCTTTTCTGATGAACTATGAAGATCTATAATAAATGAAATATAACGTTCCTATAAATATCAGAAAAATGTGTATACATATGATAGGAAGCTCAAGGTTGGGATCAGGAAACAAACTAGTGGATTAAAATCTGCAAGTTCTATTCTCCAAGTTTAGCTAATGAAGTATGAAGACTGTAAAAATGGTACTGAAAGAACTAACCTCATGCTCGAAAAACTCTCCTGCTAGAGCAGTGCATGGGATTAGGAAGAGCATGAGAACATATATTGTTTTCACTGCTTCCCTTTTATCTCTTGTTGAGCAAAAGATCTATCGGTAACATCATCTCTTACCTTACAAGGTAGGGGAAAGTTTTGTGTACACGTTACCCTCCTCACCAAACCCCACTTGTTGGGATTCATTCTGGGGTTTGTTGTTTTTGGACATATTTCTGTCTGCATACAAAAATGTTCCATTTCGTCTTCTTTTTTCTACTTGAAATGCATTTCTGTGTGGTTATGCACATTCTTAATTTTTCCCTTGGTGTTCCCACATTTTTGTTTGCCTGTATTTAATTATCTGATCGTTGGTAGTAATTCAATACACTTGTGTACTGCAGGTGAATTGGATTTCTGTGCTTTGGAGCAAAACTTGTAAGCAGCTAGGATTTGGACCAGCTCTGTATAACCTTTCGTATTCGGGAATTTGGCTAGGCAGAACACCACCTT</genome_strand>
        <mrna_strand>TCTGCTTGATCGAAGATGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGACCAATGGAAGAGGATGCCCCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGGAAAAATGAGGAAGAGGAGTTCAATACTGGGCCACTTTCTGTCCTCATGATGAGTGTTAAGAATAACACACAG...................................................................................................................................................................................................................................................................GTGCTCATCAACTGTAGGAACAACAGGAAACTTCTTGGTCGTGTGAGAGCATTTGATCGTCACTGCAATATGGTGCTTGAAAATGTTAGAGAAATGTGGACTGAG..................................................................................................................................................................................................GTGCCCAAGACTGGAAAAGGAAAAAAGAAAGCTGTTGCTGTTAACAAAGATAGGTTTATCAGCAAGATGTTCCTTCGGGGAGATTCTGTGATCATTGTCCTCCGAAATCCTAAGTAGAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATTGGATTTCTGTGCTTTGGAGCAAAACTTGTAAGCAGCTAGGATTTGGACCAGCTCTGTATAACCTTTCGTATTCGGGAATTTGGCTAGGCAGAACACCACCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E283813" ref_strand="+" ref_description="SGN-E283813 [cLES-1-D8]">
      <seq>tttgttgctcttcaatttcttctgcttgatcgaagatgagtcgaccaatggaagaggatgcccctcaagggaaaaatgaggaagaggagttcaatactgggccactttctgtcctcatgatgagtgttaagaataacacacaggtgctcatcaactgtaggaacaacaggaaacttcttggtcgtgtgagagcatttgatcgtcactgcaatatggtgcttgaaaatgttagagaaatgtggactgaggtgcccaagactggaaaaggaaaaaagaaagctgttgctgttaacaaagataggtttatcagcaagatgttccttcggggagattctgtgatcattgtcctccgaaatcctaagtagagaggtgaattggatttctgtgctttggagcaaaacttgtaagcagctaggatttggaccagctctgtataacctttcgtattcgggaatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="96022" stop="91854"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95722" g_stop="95683" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95682" i_stop="94951" i_length="732">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94950" g_stop="94926" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="65" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94925" i_stop="93847" i_length="1079">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93846" g_stop="93769" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="143" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93768" i_stop="93510" i_length="259">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93509" g_stop="93405" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="248" r_length="105" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="93404" i_stop="93211" i_length="194">
            <donor d_prob="0.639" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93210" g_stop="93090" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="369" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="93089" i_stop="92243" i_length="847">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="92242" g_stop="92154" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="458" r_length="89" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E283813" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283813" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95722" e_stop="95683"/>
          <exon e_start="94950" e_stop="94926"/>
          <exon e_start="93846" e_stop="93769"/>
          <exon e_start="93509" e_stop="93405"/>
          <exon e_start="93210" e_stop="93090"/>
          <exon e_start="92242" e_stop="92154"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTTGCTCTTCAATTTCTTCTGCTTGATCGAAGATGAGGTAATGGTTTACTGCTATTTTACACTTTGCCTTTGTACATTTGAAGTTCTTCAATTTTCTCTGTTTGATTTTTTCTCGTCATTGCAGTAACCTATTTAGTAGATTATGTAATGTTATTGTTAATCAAAGAAGTAGATAATTTTCCCTAGGTAAAGTAAGTTATTGGACGAGGAGATGAGAAATTGAAGAATTTTAGCTGTTTTCTGGACTAATTTTGTGTAGTTTTTTTTTTTTTTGGGTATTGCGTGCTTTTGGAAGTTTAAATTAGAGTGAGTAGATTCATATAACTGAAGGCAACTAGCTTGGCGTGAAGGCCTGGAATGTTTCTTTTTTCGAGTTCTATATGCAGTTTAAACACTATGCTAATTGGGTTTCATGTAGCTAAACAATTGTAAAGTTGGATTTTCGAGTAATTCAGTCTTCTCTAGCCCTTTATTACTACTGATCTTAGTTCTTTTTGTTCACTCTCTACTATATCCAAGCTTAAAACCTATGTTATTCCGTGCACATCAGTAATAGAACCCTTATATTGTCTAGAATACTAGGATAACAAGGCTGTAAGATGTACAAATAGAATTAAGAAAAAACTAGGTCAGTGTCTCATGTTTTTGTTGTTCATTGCTGATGTATTTCTCTATTCCTGTTGATTTTAGTGTTACCCAAATATTAGTAAGTGGAAGTTTCTAATTGTTTTGCTTTTTCTTTTTCTTTTCTATTTGTGCTCTTTTGCAGTCGACCAATGGAAGAGGATGCCCCTGTAAGTTAGCTTACTTTGCTAGTATTTTGCCCTATACAAAGCTCTCATTGTTTATTTTTCTCATTTTTTCATTGGCATAATCTGTGTTGTGATCTATTTTGTGTTTTAGGGGCTGTCTACTGCTTAGTACTTGTTTTCATTTTCCTTTCTGTTCACCTCAATGCGATGCATTCAATTAGATTTCTTTTGTTGGTAGCCTTGATCCTGCTTTACACGTTACAACTGAAAAGTTTCTAGCATACATCTTTTATTTTATCATATGGAGAATATGTTTATACCTCCCTTTTCAAAGCAAGATCATTGAATTGTTTGATCTGTAGAATATTTTTCAGCACATAACATCAAGTCATTGAATTTTTTTTGGTTAAGTCGTTTGAGTTCACCACTCAAAACAAATGACAAAATCAATTAGAACTTTAAAATAACAATGTAGCTAGGATGAATTTTTCTGTAAAAACTAGAACCTATCAAGTGTAAAAATTATTAGTTGAATTAGTAGAATTTATTTTCTACAGTTGTTTTGTTCCCACCTTCACACAAGTGTTATGTCAGTTTTTCTCATTTACCACATTGGATAACCCAGAAGCTAGGTCCGAACTTTGTAGTTCTCCCTTAACAGACATCCTATTGACATTTTTCTTATATTCTTGGTATGTTTATTTATACATGTACTCTTGTTCATTTTCCATTTGAGTTGCTTCTTGTTTGCCTTCCCGATGCCTAAAGTGCTTAGGTCTAAACTTTGTAGTTCTCCTTTAACAGACATCCTATTGACATTTCGTCTTTTATTCTTGGTATGTTTATTTATACATGTACTCTTGTTGTTCATTTTCCATTTGTGTTGCTTCTTATCTGCCTTCCCGATGTCAAAGTGCTTTGCTTCAAAGTTATCTAGATTAAGCACATAGTGAAAGAGTGTATAATTGGTAGATTATCTAGCTTAAGTACATAGTGAAAAAGTGTATGCCCTTCTATGTTGGTGTGATAGAGGAATGAACCTTATCAGTCCCAGTGAATATGATTTGCTTATCAGATTTTGTGAAAGATGTCTTATGTTTGCCTATGGATCTTTTGTCTAGCAAGGGAAAAATGAGGAAGAGGAGTTCAATACTGGGCCACTTTCTGTCCTCATGATGAGTGTTAAGAATAACACACAGGTATCTAATATCTTTAGCACCTACAACTGTGTCTTTCTTCATGTCGTGTTTATTTATCAATTTTAATTGTTAAAAAGAGAGATAAAATCTATCCTGGAGCCTTGTTTATGTTGACAATTTACTTTTTAAAGTCATGCCGGTATACTTCCTCATTAATCTTAGATTTAAATACTATAGAAAAAGATGCAAGCTTCGGTTTTGTATGTGGAAGGCATCAGCTTTGTGCTTGTTATTTTACAGATATTTTTTCTGGATCTAGGTGCTCATCAACTGTAGGAACAACAGGAAACTTTTTGGTCGTGTGAGAGCATTTGATTGTCACTGCAATATGGTGCTTGAAAATGTTAGAGAAATGTGGACTGAGGTTTGTTTGTTCTTGACTTAATCAACTTTTTGGGACAATGTGTATTGTGTCTTGGATCTGTATCTTGCGTCAAAAAGCTCCAGTTACCAAGATTGTTTATATTATTTTTCAGGTTCCTAAGGGCAATGTGTCTTGGATTTGAAACTTGTACAAAAAGACTCCACTTAACAAAGTTGTTTATGTTTATTCTTCAGGTGCCCAAGACTGGAAAAGGAAAAAAGAAAGCTGTTGCTGTTAACAAAGATAGGTTTATCAGCAAGATGTTCCTTCGGGGAGATTCTGTGATCATTGTCCTCCGAAATCCTAAGTAGAGAGGTACTGTTGGATCTTTGACATAGTGGTTGGAGTAATTTTCTTTGAATTATGAGCTAGTTCCTTTAATTGGTCCATGTTTGAAGTGCAATATCCTTTTAACTTGCTATTATGTAATCAAATGTTTGGTATATAAGAACTGTAAATGCTAAGTAATATTTGTTGAATCCATTATTGTGAAATTTATCAATTTATTATCATAAATAAAATTTGGAACTTCAAAAATGATTAACTCTTAGCATTTAAATAATTGTCTTTTCTGATGAACTATGAAGATCTATAATAAATGAAATATAACGTTCCTATAAATATCAGAAAAATGTGTATACATATGATAGGAAGCTCAAGGTTGGGATCAGGAAACAAACTAGTGGATTAAAATCTGCAAGTTCTATTCTCCAAGTTTAGCTAATGAAGTATGAAGACTGTAAAAATGGTACTGAAAGAACTAACCTCATGCTCGAAAAACTCTCCTGCTAGAGCAGTGCATGGGATTAGGAAGAGCATGAGAACATATATTGTTTTCACTGCTTCCCTTTTATCTCTTGTTGAGCAAAAGATCTATCGGTAACATCATCTCTTACCTTACAAGGTAGGGGAAAGTTTTGTGTACACGTTACCCTCCTCACCAAACCCCACTTGTTGGGATTCATTCTGGGGTTTGTTGTTTTTGGACATATTTCTGTCTGCATACAAAAATGTTCCATTTCGTCTTCTTTTTTCTACTTGAAATGCATTTCTGTGTGGTTATGCACATTCTTAATTTTTCCCTTGGTGTTCCCACATTTTTGTTTGCCTGTATTTAATTATCTGATCGTTGGTAGTAATTCAATACACTTGTGTACTGCAGGTGAATTGGATTTCTGTGCTTTGGAGCAAAACTTGTAAGCAGCTAGGATTTGGACCAGCTCTGTATAACCTTTCGTATTCGGGAATTTG</genome_strand>
        <mrna_strand>TTTGTTGCTCTTCAATTTCTTCTGCTTGATCGAAGATGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGACCAATGGAAGAGGATGCCCCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGGAAAAATGAGGAAGAGGAGTTCAATACTGGGCCACTTTCTGTCCTCATGATGAGTGTTAAGAATAACACACAG...................................................................................................................................................................................................................................................................GTGCTCATCAACTGTAGGAACAACAGGAAACTTCTTGGTCGTGTGAGAGCATTTGATCGTCACTGCAATATGGTGCTTGAAAATGTTAGAGAAATGTGGACTGAG..................................................................................................................................................................................................GTGCCCAAGACTGGAAAAGGAAAAAAGAAAGCTGTTGCTGTTAACAAAGATAGGTTTATCAGCAAGATGTTCCTTCGGGGAGATTCTGTGATCATTGTCCTCCGAAATCCTAAGTAGAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATTGGATTTCTGTGCTTTGGAGCAAAACTTGTAAGCAGCTAGGATTTGGACCAGCTCTGTATAACCTTTCGTATTCGGGAATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E438910" ref_strand="+" ref_description="SGN-E438910 [cSTA-10-O1]">
      <seq>ctctttaaaccctagctcttttgccccttttttgttgctcttcaatttcttctgcttgatcgaagatgagtcgaccaatggaggaagatgcccctcaagggaaaaatgaggaagaggaattcaatactggcccactttctgtcctgatgatgagtgttaagaataacacacaggtgctcatcaattgtaggaacaacaggaaacttcttggtcgtgtgagagcatttgatcgtcactgcaatatggtccttgaaaatgttagagaaatgtggactgaggtgcccaagactggaaaaggaaaaaagaaagctgttgctgttaacaaagataggtttatcagcaaaatgttccttcggggagattctgtgatcattgtcctccgaaatcccaagtagaggtgaattggatttctgtgctttggagcaaaacatgtgagcagctaggatttggaccagctctgtataacctttgattgctgtagggtgctgtaagacttgatataggattttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="96055" stop="91801"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95755" g_stop="95683" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="0.945"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95682" i_stop="94951" i_length="732">
            <donor d_prob="0.950" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94950" g_stop="94926" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="95" r_length="25" r_score="0.920"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94925" i_stop="93847" i_length="1079">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93846" g_stop="93769" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="173" r_length="78" r_score="0.962"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93768" i_stop="93510" i_length="259">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.963" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93509" g_stop="93405" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="278" r_length="105" r_score="0.962"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="93404" i_stop="93211" i_length="194">
            <donor d_prob="0.639" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93210" g_stop="93090" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="397" r_length="119" r_score="0.967"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="93089" i_stop="92243" i_length="847">
            <donor d_prob="0.952" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="92242" g_stop="92179" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="461" r_length="64" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E438910" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="0.910" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E438910" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95755" e_stop="95683"/>
          <exon e_start="94950" e_stop="94926"/>
          <exon e_start="93846" e_stop="93769"/>
          <exon e_start="93509" e_stop="93405"/>
          <exon e_start="93210" e_stop="93090"/>
          <exon e_start="92242" e_stop="92179"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTTAAACCCTAGCTCCTTTGCCCACTTTTTTTTGTTGCTCTTCAATTTCTTCTGCTTGATCGAAGATGAGGTAATGGTTTACTGCTATTTTACACTTTGCCTTTGTACATTTGAAGTTCTTCAATTTTCTCTGTTTGATTTTTTCTCGTCATTGCAGTAACCTATTTAGTAGATTATGTAATGTTATTGTTAATCAAAGAAGTAGATAATTTTCCCTAGGTAAAGTAAGTTATTGGACGAGGAGATGAGAAATTGAAGAATTTTAGCTGTTTTCTGGACTAATTTTGTGTAGTTTTTTTTTTTTTTGGGTATTGCGTGCTTTTGGAAGTTTAAATTAGAGTGAGTAGATTCATATAACTGAAGGCAACTAGCTTGGCGTGAAGGCCTGGAATGTTTCTTTTTTCGAGTTCTATATGCAGTTTAAACACTATGCTAATTGGGTTTCATGTAGCTAAACAATTGTAAAGTTGGATTTTCGAGTAATTCAGTCTTCTCTAGCCCTTTATTACTACTGATCTTAGTTCTTTTTGTTCACTCTCTACTATATCCAAGCTTAAAACCTATGTTATTCCGTGCACATCAGTAATAGAACCCTTATATTGTCTAGAATACTAGGATAACAAGGCTGTAAGATGTACAAATAGAATTAAGAAAAAACTAGGTCAGTGTCTCATGTTTTTGTTGTTCATTGCTGATGTATTTCTCTATTCCTGTTGATTTTAGTGTTACCCAAATATTAGTAAGTGGAAGTTTCTAATTGTTTTGCTTTTTCTTTTTCTTTTCTATTTGTGCTCTTTTGCAGTCGACCAATGGAAGAGGATGCCCCTGTAAGTTAGCTTACTTTGCTAGTATTTTGCCCTATACAAAGCTCTCATTGTTTATTTTTCTCATTTTTTCATTGGCATAATCTGTGTTGTGATCTATTTTGTGTTTTAGGGGCTGTCTACTGCTTAGTACTTGTTTTCATTTTCCTTTCTGTTCACCTCAATGCGATGCATTCAATTAGATTTCTTTTGTTGGTAGCCTTGATCCTGCTTTACACGTTACAACTGAAAAGTTTCTAGCATACATCTTTTATTTTATCATATGGAGAATATGTTTATACCTCCCTTTTCAAAGCAAGATCATTGAATTGTTTGATCTGTAGAATATTTTTCAGCACATAACATCAAGTCATTGAATTTTTTTTGGTTAAGTCGTTTGAGTTCACCACTCAAAACAAATGACAAAATCAATTAGAACTTTAAAATAACAATGTAGCTAGGATGAATTTTTCTGTAAAAACTAGAACCTATCAAGTGTAAAAATTATTAGTTGAATTAGTAGAATTTATTTTCTACAGTTGTTTTGTTCCCACCTTCACACAAGTGTTATGTCAGTTTTTCTCATTTACCACATTGGATAACCCAGAAGCTAGGTCCGAACTTTGTAGTTCTCCCTTAACAGACATCCTATTGACATTTTTCTTATATTCTTGGTATGTTTATTTATACATGTACTCTTGTTCATTTTCCATTTGAGTTGCTTCTTGTTTGCCTTCCCGATGCCTAAAGTGCTTAGGTCTAAACTTTGTAGTTCTCCTTTAACAGACATCCTATTGACATTTCGTCTTTTATTCTTGGTATGTTTATTTATACATGTACTCTTGTTGTTCATTTTCCATTTGTGTTGCTTCTTATCTGCCTTCCCGATGTCAAAGTGCTTTGCTTCAAAGTTATCTAGATTAAGCACATAGTGAAAGAGTGTATAATTGGTAGATTATCTAGCTTAAGTACATAGTGAAAAAGTGTATGCCCTTCTATGTTGGTGTGATAGAGGAATGAACCTTATCAGTCCCAGTGAATATGATTTGCTTATCAGATTTTGTGAAAGATGTCTTATGTTTGCCTATGGATCTTTTGTCTAGCAAGGGAAAAATGAGGAAGAGGAGTTCAATACTGGGCCACTTTCTGTCCTCATGATGAGTGTTAAGAATAACACACAGGTATCTAATATCTTTAGCACCTACAACTGTGTCTTTCTTCATGTCGTGTTTATTTATCAATTTTAATTGTTAAAAAGAGAGATAAAATCTATCCTGGAGCCTTGTTTATGTTGACAATTTACTTTTTAAAGTCATGCCGGTATACTTCCTCATTAATCTTAGATTTAAATACTATAGAAAAAGATGCAAGCTTCGGTTTTGTATGTGGAAGGCATCAGCTTTGTGCTTGTTATTTTACAGATATTTTTTCTGGATCTAGGTGCTCATCAACTGTAGGAACAACAGGAAACTTTTTGGTCGTGTGAGAGCATTTGATTGTCACTGCAATATGGTGCTTGAAAATGTTAGAGAAATGTGGACTGAGGTTTGTTTGTTCTTGACTTAATCAACTTTTTGGGACAATGTGTATTGTGTCTTGGATCTGTATCTTGCGTCAAAAAGCTCCAGTTACCAAGATTGTTTATATTATTTTTCAGGTTCCTAAGGGCAATGTGTCTTGGATTTGAAACTTGTACAAAAAGACTCCACTTAACAAAGTTGTTTATGTTTATTCTTCAGGTGCCCAAGACTGGAAAAGGAAAAAAGAAAGCTGTTGCTGTTAACAAAGATAGGTTTATCAGCAAGATGTTCCTTCGGGGAGATTCTGTGATCATTGTCCTCCGAAATCCTAAGTAGAGAGGTACTGTTGGATCTTTGACATAGTGGTTGGAGTAATTTTCTTTGAATTATGAGCTAGTTCCTTTAATTGGTCCATGTTTGAAGTGCAATATCCTTTTAACTTGCTATTATGTAATCAAATGTTTGGTATATAAGAACTGTAAATGCTAAGTAATATTTGTTGAATCCATTATTGTGAAATTTATCAATTTATTATCATAAATAAAATTTGGAACTTCAAAAATGATTAACTCTTAGCATTTAAATAATTGTCTTTTCTGATGAACTATGAAGATCTATAATAAATGAAATATAACGTTCCTATAAATATCAGAAAAATGTGTATACATATGATAGGAAGCTCAAGGTTGGGATCAGGAAACAAACTAGTGGATTAAAATCTGCAAGTTCTATTCTCCAAGTTTAGCTAATGAAGTATGAAGACTGTAAAAATGGTACTGAAAGAACTAACCTCATGCTCGAAAAACTCTCCTGCTAGAGCAGTGCATGGGATTAGGAAGAGCATGAGAACATATATTGTTTTCACTGCTTCCCTTTTATCTCTTGTTGAGCAAAAGATCTATCGGTAACATCATCTCTTACCTTACAAGGTAGGGGAAAGTTTTGTGTACACGTTACCCTCCTCACCAAACCCCACTTGTTGGGATTCATTCTGGGGTTTGTTGTTTTTGGACATATTTCTGTCTGCATACAAAAATGTTCCATTTCGTCTTCTTTTTTCTACTTGAAATGCATTTCTGTGTGGTTATGCACATTCTTAATTTTTCCCTTGGTGTTCCCACATTTTTGTTTGCCTGTATTTAATTATCTGATCGTTGGTAGTAATTCAATACACTTGTGTACTGCAGGTGAATTGGATTTCTGTGCTTTGGAGCAAAACTTGTAAGCAGCTAGGATTTGGACCAGCTCTGT</genome_strand>
        <mrna_strand>CTCTTTAAACCCTAGCTCTTTTGCCC-C--TTTTTTGTTGCTCTTCAATTTCTTCTGCTTGATCGAAGATGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGACCAATGGAGGAAGATGCCCCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGGAAAAATGAGGAAGAGGAATTCAATACTGGCCCACTTTCTGTCCTGATGATGAGTGTTAAGAATAACACACAG...................................................................................................................................................................................................................................................................GTGCTCATCAATTGTAGGAACAACAGGAAACTTCTTGGTCGTGTGAGAGCATTTGATCGTCACTGCAATATGGTCCTTGAAAATGTTAGAGAAATGTGGACTGAG..................................................................................................................................................................................................GTGCCCAAGACTGGAAAAGGAAAAAAGAAAGCTGTTGCTGTTAACAAAGATAGGTTTATCAGCAAAATGTTCCTTCGGGGAGATTCTGTGATCATTGTCCTCCGAAATCCCAAGT--AGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATTGGATTTCTGTGCTTTGGAGCAAAACATGTGAGCAGCTAGGATTTGGACCAGCTCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E319024" ref_strand="+" ref_description="SGN-E319024 [cTOB-14-P24]">
      <seq>aagatgagtcgaccaatggaagaggatgcccctcaagggaaaaatgaggaagaggagttcaatactgggccactttctgtcctcatgatgagtgttaagaataacacacaggtgctcatcaactgtaagaacaacaggaaacttcttggtcgtgtgagagcattagatcgtcactgcaatatggtgcttgaaaatgttacagaaatgtggactgacgtgcccaagactggaaaaggaaaaaagaaagctgttgctgttaacacagatacgtttatcagcgagatgttccttctgggagattctgtgatcattgtcctccgaaatcctaactcgagaggcgaattggatttctgtgctttggagcaaaactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="95255" stop="91909"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94950" g_stop="94926" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="33" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94925" i_stop="93847" i_length="1079">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93846" g_stop="93769" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="111" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93768" i_stop="93510" i_length="259">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93509" g_stop="93405" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="216" r_length="105" r_score="0.943"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93404" i_stop="93211" i_length="194">
            <donor d_prob="0.639" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93210" g_stop="93090" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="337" r_length="121" r_score="0.950"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="93089" i_stop="92243" i_length="847">
            <donor d_prob="0.952" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="92242" g_stop="92209" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="371" r_length="34" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E319024" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>363</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319024" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94950" e_stop="94926"/>
          <exon e_start="93846" e_stop="93769"/>
          <exon e_start="93509" e_stop="93405"/>
          <exon e_start="93210" e_stop="93090"/>
          <exon e_start="92242" e_stop="92209"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGACCAATGGAAGAGGATGCCCCTGTAAGTTAGCTTACTTTGCTAGTATTTTGCCCTATACAAAGCTCTCATTGTTTATTTTTCTCATTTTTTCATTGGCATAATCTGTGTTGTGATCTATTTTGTGTTTTAGGGGCTGTCTACTGCTTAGTACTTGTTTTCATTTTCCTTTCTGTTCACCTCAATGCGATGCATTCAATTAGATTTCTTTTGTTGGTAGCCTTGATCCTGCTTTACACGTTACAACTGAAAAGTTTCTAGCATACATCTTTTATTTTATCATATGGAGAATATGTTTATACCTCCCTTTTCAAAGCAAGATCATTGAATTGTTTGATCTGTAGAATATTTTTCAGCACATAACATCAAGTCATTGAATTTTTTTTGGTTAAGTCGTTTGAGTTCACCACTCAAAACAAATGACAAAATCAATTAGAACTTTAAAATAACAATGTAGCTAGGATGAATTTTTCTGTAAAAACTAGAACCTATCAAGTGTAAAAATTATTAGTTGAATTAGTAGAATTTATTTTCTACAGTTGTTTTGTTCCCACCTTCACACAAGTGTTATGTCAGTTTTTCTCATTTACCACATTGGATAACCCAGAAGCTAGGTCCGAACTTTGTAGTTCTCCCTTAACAGACATCCTATTGACATTTTTCTTATATTCTTGGTATGTTTATTTATACATGTACTCTTGTTCATTTTCCATTTGAGTTGCTTCTTGTTTGCCTTCCCGATGCCTAAAGTGCTTAGGTCTAAACTTTGTAGTTCTCCTTTAACAGACATCCTATTGACATTTCGTCTTTTATTCTTGGTATGTTTATTTATACATGTACTCTTGTTGTTCATTTTCCATTTGTGTTGCTTCTTATCTGCCTTCCCGATGTCAAAGTGCTTTGCTTCAAAGTTATCTAGATTAAGCACATAGTGAAAGAGTGTATAATTGGTAGATTATCTAGCTTAAGTACATAGTGAAAAAGTGTATGCCCTTCTATGTTGGTGTGATAGAGGAATGAACCTTATCAGTCCCAGTGAATATGATTTGCTTATCAGATTTTGTGAAAGATGTCTTATGTTTGCCTATGGATCTTTTGTCTAGCAAGGGAAAAATGAGGAAGAGGAGTTCAATACTGGGCCACTTTCTGTCCTCATGATGAGTGTTAAGAATAACACACAGGTATCTAATATCTTTAGCACCTACAACTGTGTCTTTCTTCATGTCGTGTTTATTTATCAATTTTAATTGTTAAAAAGAGAGATAAAATCTATCCTGGAGCCTTGTTTATGTTGACAATTTACTTTTTAAAGTCATGCCGGTATACTTCCTCATTAATCTTAGATTTAAATACTATAGAAAAAGATGCAAGCTTCGGTTTTGTATGTGGAAGGCATCAGCTTTGTGCTTGTTATTTTACAGATATTTTTTCTGGATCTAGGTGCTCATCAACTGTAGGAACAACAGGAAACTTTTTGGTCGTGTGAGAGCATTTGATTGTCACTGCAATATGGTGCTTGAAAATGTTAGAGAAATGTGGACTGAGGTTTGTTTGTTCTTGACTTAATCAACTTTTTGGGACAATGTGTATTGTGTCTTGGATCTGTATCTTGCGTCAAAAAGCTCCAGTTACCAAGATTGTTTATATTATTTTTCAGGTTCCTAAGGGCAATGTGTCTTGGATTTGAAACTTGTACAAAAAGACTCCACTTAACAAAGTTGTTTATGTTTATTCTTCAGGTGCCCAAGACTGGAAAAGGAAAAAAGAAAGCTGTTGCTGTTAACAAAGATAGGTTTATCAGCAAGATGTTCCTTCGGGGAGATTCTGTGATCATTGTCCTCCGAAATCCTAAGTAGAGAGGTACTGTTGGATCTTTGACATAGTGGTTGGAGTAATTTTCTTTGAATTATGAGCTAGTTCCTTTAATTGGTCCATGTTTGAAGTGCAATATCCTTTTAACTTGCTATTATGTAATCAAATGTTTGGTATATAAGAACTGTAAATGCTAAGTAATATTTGTTGAATCCATTATTGTGAAATTTATCAATTTATTATCATAAATAAAATTTGGAACTTCAAAAATGATTAACTCTTAGCATTTAAATAATTGTCTTTTCTGATGAACTATGAAGATCTATAATAAATGAAATATAACGTTCCTATAAATATCAGAAAAATGTGTATACATATGATAGGAAGCTCAAGGTTGGGATCAGGAAACAAACTAGTGGATTAAAATCTGCAAGTTCTATTCTCCAAGTTTAGCTAATGAAGTATGAAGACTGTAAAAATGGTACTGAAAGAACTAACCTCATGCTCGAAAAACTCTCCTGCTAGAGCAGTGCATGGGATTAGGAAGAGCATGAGAACATATATTGTTTTCACTGCTTCCCTTTTATCTCTTGTTGAGCAAAAGATCTATCGGTAACATCATCTCTTACCTTACAAGGTAGGGGAAAGTTTTGTGTACACGTTACCCTCCTCACCAAACCCCACTTGTTGGGATTCATTCTGGGGTTTGTTGTTTTTGGACATATTTCTGTCTGCATACAAAAATGTTCCATTTCGTCTTCTTTTTTCTACTTGAAATGCATTTCTGTGTGGTTATGCACATTCTTAATTTTTCCCTTGGTGTTCCCACATTTTTGTTTGCCTGTATTTAATTATCTGATCGTTGGTAGTAATTCAATACACTTGTGTACTGCAGGTGAATTGGATTTCTGTGCTTTGGAGCAAAACTT</genome_strand>
        <mrna_strand>TCGACCAATGGAAGAGGATGCCCCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGGAAAAATGAGGAAGAGGAGTTCAATACTGGGCCACTTTCTGTCCTCATGATGAGTGTTAAGAATAACACACAG...................................................................................................................................................................................................................................................................GTGCTCATCAACTGTAAGAACAACAGGAAACTTCTTGGTCGTGTGAGAGCATTAGATCGTCACTGCAATATGGTGCTTGAAAATGTTACAGAAATGTGGACTGAC..................................................................................................................................................................................................GTGCCCAAGACTGGAAAAGGAAAAAAGAAAGCTGTTGCTGTTAACACAGATACGTTTATCAGCGAGATGTTCCTTCTGGGAGATTCTGTGATCATTGTCCTCCGAAATCCTAACTCGAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAATTGGATTTCTGTGCTTTGGAGCAAAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E289115" ref_strand="+" ref_description="SGN-E289115 [cLES-18-O2]">
      <seq>cgaagatgagtcgaccaatggaagaggatgcccctcaagggaaaaatgaggaagaggagttcaatactgggccactttctgtcctcatgatgagtgttaagaataacacacaggtgctcatcaactgtaggaacaacaggaaacttcttggtcgtgtgagagcatttgatcgtcactgcaatatggtgcttgaaaatgttagagaaatgtggactgaggtgcccaagactggaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="95255" stop="92892"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94950" g_stop="94926" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="35" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94925" i_stop="93847" i_length="1079">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93846" g_stop="93769" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="113" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93768" i_stop="93510" i_length="259">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93509" g_stop="93405" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="218" r_length="105" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93404" i_stop="93211" i_length="194">
            <donor d_prob="0.639" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93210" g_stop="93192" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="237" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E289115" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>227</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289115" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94950" e_stop="94926"/>
          <exon e_start="93846" e_stop="93769"/>
          <exon e_start="93509" e_stop="93405"/>
          <exon e_start="93210" e_stop="93192"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGACCAATGGAAGAGGATGCCCCTGTAAGTTAGCTTACTTTGCTAGTATTTTGCCCTATACAAAGCTCTCATTGTTTATTTTTCTCATTTTTTCATTGGCATAATCTGTGTTGTGATCTATTTTGTGTTTTAGGGGCTGTCTACTGCTTAGTACTTGTTTTCATTTTCCTTTCTGTTCACCTCAATGCGATGCATTCAATTAGATTTCTTTTGTTGGTAGCCTTGATCCTGCTTTACACGTTACAACTGAAAAGTTTCTAGCATACATCTTTTATTTTATCATATGGAGAATATGTTTATACCTCCCTTTTCAAAGCAAGATCATTGAATTGTTTGATCTGTAGAATATTTTTCAGCACATAACATCAAGTCATTGAATTTTTTTTGGTTAAGTCGTTTGAGTTCACCACTCAAAACAAATGACAAAATCAATTAGAACTTTAAAATAACAATGTAGCTAGGATGAATTTTTCTGTAAAAACTAGAACCTATCAAGTGTAAAAATTATTAGTTGAATTAGTAGAATTTATTTTCTACAGTTGTTTTGTTCCCACCTTCACACAAGTGTTATGTCAGTTTTTCTCATTTACCACATTGGATAACCCAGAAGCTAGGTCCGAACTTTGTAGTTCTCCCTTAACAGACATCCTATTGACATTTTTCTTATATTCTTGGTATGTTTATTTATACATGTACTCTTGTTCATTTTCCATTTGAGTTGCTTCTTGTTTGCCTTCCCGATGCCTAAAGTGCTTAGGTCTAAACTTTGTAGTTCTCCTTTAACAGACATCCTATTGACATTTCGTCTTTTATTCTTGGTATGTTTATTTATACATGTACTCTTGTTGTTCATTTTCCATTTGTGTTGCTTCTTATCTGCCTTCCCGATGTCAAAGTGCTTTGCTTCAAAGTTATCTAGATTAAGCACATAGTGAAAGAGTGTATAATTGGTAGATTATCTAGCTTAAGTACATAGTGAAAAAGTGTATGCCCTTCTATGTTGGTGTGATAGAGGAATGAACCTTATCAGTCCCAGTGAATATGATTTGCTTATCAGATTTTGTGAAAGATGTCTTATGTTTGCCTATGGATCTTTTGTCTAGCAAGGGAAAAATGAGGAAGAGGAGTTCAATACTGGGCCACTTTCTGTCCTCATGATGAGTGTTAAGAATAACACACAGGTATCTAATATCTTTAGCACCTACAACTGTGTCTTTCTTCATGTCGTGTTTATTTATCAATTTTAATTGTTAAAAAGAGAGATAAAATCTATCCTGGAGCCTTGTTTATGTTGACAATTTACTTTTTAAAGTCATGCCGGTATACTTCCTCATTAATCTTAGATTTAAATACTATAGAAAAAGATGCAAGCTTCGGTTTTGTATGTGGAAGGCATCAGCTTTGTGCTTGTTATTTTACAGATATTTTTTCTGGATCTAGGTGCTCATCAACTGTAGGAACAACAGGAAACTTTTTGGTCGTGTGAGAGCATTTGATTGTCACTGCAATATGGTGCTTGAAAATGTTAGAGAAATGTGGACTGAGGTTTGTTTGTTCTTGACTTAATCAACTTTTTGGGACAATGTGTATTGTGTCTTGGATCTGTATCTTGCGTCAAAAAGCTCCAGTTACCAAGATTGTTTATATTATTTTTCAGGTTCCTAAGGGCAATGTGTCTTGGATTTGAAACTTGTACAAAAAGACTCCACTTAACAAAGTTGTTTATGTTTATTCTTCAGGTGCCCAAGACTGGAAAAG</genome_strand>
        <mrna_strand>TCGACCAATGGAAGAGGATGCCCCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGGAAAAATGAGGAAGAGGAGTTCAATACTGGGCCACTTTCTGTCCTCATGATGAGTGTTAAGAATAACACACAG...................................................................................................................................................................................................................................................................GTGCTCATCAACTGTAGGAACAACAGGAAACTTCTTGGTCGTGTGAGAGCATTTGATCGTCACTGCAATATGGTGCTTGAAAATGTTAGAGAAATGTGGACTGAG..................................................................................................................................................................................................GTGCCCAAGACTGGAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E457278" ref_strand="+" ref_description="SGN-E457278 [cPRO-2-A24]">
      <seq>tcaacagagacgagggttttccctctaccctctttaaaccctagctcttttgcccccttttttgttgctcttcaattcctctgcttgatcgaggatgagtcgaccaatggaagaagatgcccctcaagggaaaaatgaggaagaggaattcaatactggcccactttctgtcctgatgatgagtgttaagaataacacacaggtgctcatcaattgtaggaacaacaggaaacttcttggtcgtgtgagagcatttgatcgtcactgcaatatgggccttgaaaatgttagagaaatgtggactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="96067" stop="93107"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95767" g_stop="95683" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="99" r_length="82" r_score="0.918"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95682" i_stop="94951" i_length="732">
            <donor d_prob="0.950" d_score="0.88"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94950" g_stop="94926" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="124" r_length="25" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94925" i_stop="93847" i_length="1079">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93846" g_stop="93769" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="202" r_length="78" r_score="0.962"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93768" i_stop="93510" i_length="259">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.963" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93509" g_stop="93407" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="305" r_length="103" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E457278" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>291</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E457278" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95767" e_stop="95683"/>
          <exon e_start="94950" e_stop="94926"/>
          <exon e_start="93846" e_stop="93769"/>
          <exon e_start="93509" e_stop="93407"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCCTCTACCCTCTTTAAACCCTAGCTCCTTTGCCCACTTTTTTTTGTTGCTCTTCAATTTCTTCTGCTTGATCGAAGATGAGGTAATGGTTTACTGCTATTTTACACTTTGCCTTTGTACATTTGAAGTTCTTCAATTTTCTCTGTTTGATTTTTTCTCGTCATTGCAGTAACCTATTTAGTAGATTATGTAATGTTATTGTTAATCAAAGAAGTAGATAATTTTCCCTAGGTAAAGTAAGTTATTGGACGAGGAGATGAGAAATTGAAGAATTTTAGCTGTTTTCTGGACTAATTTTGTGTAGTTTTTTTTTTTTTTGGGTATTGCGTGCTTTTGGAAGTTTAAATTAGAGTGAGTAGATTCATATAACTGAAGGCAACTAGCTTGGCGTGAAGGCCTGGAATGTTTCTTTTTTCGAGTTCTATATGCAGTTTAAACACTATGCTAATTGGGTTTCATGTAGCTAAACAATTGTAAAGTTGGATTTTCGAGTAATTCAGTCTTCTCTAGCCCTTTATTACTACTGATCTTAGTTCTTTTTGTTCACTCTCTACTATATCCAAGCTTAAAACCTATGTTATTCCGTGCACATCAGTAATAGAACCCTTATATTGTCTAGAATACTAGGATAACAAGGCTGTAAGATGTACAAATAGAATTAAGAAAAAACTAGGTCAGTGTCTCATGTTTTTGTTGTTCATTGCTGATGTATTTCTCTATTCCTGTTGATTTTAGTGTTACCCAAATATTAGTAAGTGGAAGTTTCTAATTGTTTTGCTTTTTCTTTTTCTTTTCTATTTGTGCTCTTTTGCAGTCGACCAATGGAAGAGGATGCCCCTGTAAGTTAGCTTACTTTGCTAGTATTTTGCCCTATACAAAGCTCTCATTGTTTATTTTTCTCATTTTTTCATTGGCATAATCTGTGTTGTGATCTATTTTGTGTTTTAGGGGCTGTCTACTGCTTAGTACTTGTTTTCATTTTCCTTTCTGTTCACCTCAATGCGATGCATTCAATTAGATTTCTTTTGTTGGTAGCCTTGATCCTGCTTTACACGTTACAACTGAAAAGTTTCTAGCATACATCTTTTATTTTATCATATGGAGAATATGTTTATACCTCCCTTTTCAAAGCAAGATCATTGAATTGTTTGATCTGTAGAATATTTTTCAGCACATAACATCAAGTCATTGAATTTTTTTTGGTTAAGTCGTTTGAGTTCACCACTCAAAACAAATGACAAAATCAATTAGAACTTTAAAATAACAATGTAGCTAGGATGAATTTTTCTGTAAAAACTAGAACCTATCAAGTGTAAAAATTATTAGTTGAATTAGTAGAATTTATTTTCTACAGTTGTTTTGTTCCCACCTTCACACAAGTGTTATGTCAGTTTTTCTCATTTACCACATTGGATAACCCAGAAGCTAGGTCCGAACTTTGTAGTTCTCCCTTAACAGACATCCTATTGACATTTTTCTTATATTCTTGGTATGTTTATTTATACATGTACTCTTGTTCATTTTCCATTTGAGTTGCTTCTTGTTTGCCTTCCCGATGCCTAAAGTGCTTAGGTCTAAACTTTGTAGTTCTCCTTTAACAGACATCCTATTGACATTTCGTCTTTTATTCTTGGTATGTTTATTTATACATGTACTCTTGTTGTTCATTTTCCATTTGTGTTGCTTCTTATCTGCCTTCCCGATGTCAAAGTGCTTTGCTTCAAAGTTATCTAGATTAAGCACATAGTGAAAGAGTGTATAATTGGTAGATTATCTAGCTTAAGTACATAGTGAAAAAGTGTATGCCCTTCTATGTTGGTGTGATAGAGGAATGAACCTTATCAGTCCCAGTGAATATGATTTGCTTATCAGATTTTGTGAAAGATGTCTTATGTTTGCCTATGGATCTTTTGTCTAGCAAGGGAAAAATGAGGAAGAGGAGTTCAATACTGGGCCACTTTCTGTCCTCATGATGAGTGTTAAGAATAACACACAGGTATCTAATATCTTTAGCACCTACAACTGTGTCTTTCTTCATGTCGTGTTTATTTATCAATTTTAATTGTTAAAAAGAGAGATAAAATCTATCCTGGAGCCTTGTTTATGTTGACAATTTACTTTTTAAAGTCATGCCGGTATACTTCCTCATTAATCTTAGATTTAAATACTATAGAAAAAGATGCAAGCTTCGGTTTTGTATGTGGAAGGCATCAGCTTTGTGCTTGTTATTTTACAGATATTTTTTCTGGATCTAGGTGCTCATCAACTGTAGGAACAACAGGAAACTTTTTGGTCGTGTGAGAGCATTTGATTGTCACTGCAATATGGTGCTTGAAAATGTTAGAGAAATGTGGACTG</genome_strand>
        <mrna_strand>TTTCCCTCTACCCTCTTTAAACCCTAGCTCTTTTGCCC-C-CTTTTTTGTTGCTCTTCAA-TTCCTCTGCTTGATCGAGGATGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGACCAATGGAAGAAGATGCCCCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGGAAAAATGAGGAAGAGGAATTCAATACTGGCCCACTTTCTGTCCTGATGATGAGTGTTAAGAATAACACACAG...................................................................................................................................................................................................................................................................GTGCTCATCAATTGTAGGAACAACAGGAAACTTCTTGGTCGTGTGAGAGCATTTGATCGTCACTGCAATATGGGCCTTGAAAATGTTAGAGAAATGTGGACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E230396" ref_strand="+" ref_description="SGN-E230396 [cLEL-35-H7](-)">
      <seq>ccaatccaactcttttaaattcttccaaatataaaatgaagtttgaggttgataacctagctttattcttaaatttaagcatcctcatttgttgtagtagtatcatcacagagtgtattataaactctacgatggtcatgaatcatctagttttttctagtttttattttttttatgcttgttaattagtagaggtttgatgtcagtaaggtaaggcttagcccccttgcttgtacttttctctttattaataaaactagcccttggcacaccttacctagcggaattgcttcaaagaataaaaaaaagattgttttccagaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="98935" stop="98012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98635" g_stop="98310" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="327" polyA_stop="341"/>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E230396" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>326</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E230396" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98635" e_stop="98310"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAATCCAACTCTTTTAAATTCTTACAAATATAAAATGAAGTTTGAGGTTGATAACCTAGCTTTATTCTTAAATTTAAGCATCCTCATTTGTTGTAGTAGTATCATCACAGAGTGTATTATAAACTCTACGATGGTCATGAATCATCTAGTTTTTTCTAGTTTTTATTTTTTTTATGCTTGTTAATTAGTAGAGGTTTGATGTCAGTAAGGTAAGGCTTAGCCCCCTTGCTTGTACTTTTCTCTTTATTAATAAAACTAGCCCTTGGCACACCTTACCTAGCGGAATTGCTTCAAAGAATAAAAAAAAGATTGTTTTCCAGATATT</genome_strand>
        <mrna_strand>CCAATCCAACTCTTTTAAATTCTTCCAAATATAAAATGAAGTTTGAGGTTGATAACCTAGCTTTATTCTTAAATTTAAGCATCCTCATTTGTTGTAGTAGTATCATCACAGAGTGTATTATAAACTCTACGATGGTCATGAATCATCTAGTTTTTTCTAGTTTTTATTTTTTTTATGCTTGTTAATTAGTAGAGGTTTGATGTCAGTAAGGTAAGGCTTAGCCCCCTTGCTTGTACTTTTCTCTTTATTAATAAAACTAGCCCTTGGCACACCTTACCTAGCGGAATTGCTTCAAAGAATAAAAAAAAGATTGTTTTCCAGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E537919" ref_strand="+" ref_description="SGN-E537919 [TUS-56-M9](-)">
      <seq>cgaaatggagagaatactggtgatgctagttaatcgagagatcagttggtcgagctacatctactctcccatatgagatgcacacagtttttttcacctgcaacaatgaaagaaacaaaacccacatagaacgcgtccccaagctaattatctgtgtggattgaaaggacgtcgaatgcatcatcattcatgtatgtagaaacttgatcgatagatatggcgtgttgcatctccttcatttgttcattcgcgttacggtggcataaatgttactactattatttatcaaggaagtggaaaataacatgttttacactatgaagttttgttggacatatttgatggtgaagacgagggaaatacttcaggttactttacacggccaatccaactcttttaaattcttacaaatataaaatgaagtttgaggttgataacctagctttattcttaaatttaagcatcctcatttgttgtagtagtatcatcacagagtgtattataaactctacgatggtcatgaatcatctagttttttctagtttttattttttttatgcttgttaattagtagaggtttgatgtcagtaaggtaaggcttagcccccttgcttgtacttttctctttattaataaaactagcccttggcacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="99316" stop="98065"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99016" g_stop="98356" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="662" r_length="662" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E537919" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E537919" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99016" e_stop="98356"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAATGGAGAGAATACTGGTGATGCTAGTTTAATCGAGAGATCAGTTTGTCGAGCTACATCTACTCCTCCATATGAGATGCACACAG-TTTCTTCACCTGCAACAATGAAAGAAACAAAA-CCACATAGAACGCGTCCCCAAGCTAATTATCTGTGTGGATTGAAAGGACGTCGAATGCATCATCATTCATCTATGTAGAAACTTGATCGATAGATATGGCGTGTTGCATCTCCTTCATTTGTTCATTCGCGTTACGGTGGCATAAATGTTACTACTATTATTTATCAAGGAAGTGGAAAATAACATGTTTTACACTATGAAGTTTTGTTGGACATATTTGATGATGAAGACGAGGGAAATACTTCAGGTTACTTTACACGGCCAATCCAACTCTTTTAAATTCTTACAAATATAAAATGAAGTTTGAGGTTGATAACCTAGCTTTATTCTTAAATTTAAGCATCCTCATTTGTTGTAGTAGTATCATCACAGAGTGTATTATAAACTCTACGATGGTCATGAATCATCTAGTTTTTTCTAGTTTTTATTTTTTTTATGCTTGTTAATTAGTAGAGGTTTGATGTCAGTAAGGTAAGGCTTAGCCCCCTTGCTTGTACTTTTCTCTTTATTAATAAAACTAGCCCTTGGCACACCTTACCTA</genome_strand>
        <mrna_strand>CGAAATGGAGAGAATACTGGTGATGCTAG-TTAATCGAGAGATCAGTTGGTCGAGCTACATCTACTCTCCCATATGAGATGCACACAGTTTTTTTCACCTGCAACAATGAAAGAAACAAAACCCACATAGAACGCGTCCCCAAGCTAATTATCTGTGTGGATTGAAAGGACGTCGAATGCATCATCATTCATGTATGTAGAAACTTGATCGATAGATATGGCGTGTTGCATCTCCTTCATTTGTTCATTCGCGTTACGGTGGCATAAATGTTACTACTATTATTTATCAAGGAAGTGGAAAATAACATGTTTTACACTATGAAGTTTTGTTGGACATATTTGATGGTGAAGACGAGGGAAATACTTCAGGTTACTTTACACGGCCAATCCAACTCTTTTAAATTCTTACAAATATAAAATGAAGTTTGAGGTTGATAACCTAGCTTTATTCTTAAATTTAAGCATCCTCATTTGTTGTAGTAGTATCATCACAGAGTGTATTATAAACTCTACGATGGTCATGAATCATCTAGTTTTTTCTAGTTTTTATTTTTTTTATGCTTGTTAATTAGTAGAGGTTTGATGTCAGTAAGGTAAGGCTTAGCCCCCTTGCTTGTACTTTTCTCTTTATTAATAAAACTAGCCCTTGGCACAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E266207" ref_strand="+" ref_description="SGN-E266207 [cLEI-3-C2]">
      <seq>gtttgcacgaagtcactgtaccatttttagtgttacatggggaagcagacatagtaactgatccagaaataagtaaggctttatacgagcaagcgagtagcaaagacaagactataaaactctatccaggaatgtggcatggtttgacatatggtgagccagaagaaaacattgaaatcgtattttcagatatcatctcgtggcttgacaagcgaaatggagagaatactggtgatgctagtttaatcgagagatcagtttgtcgagctacatctactcctccatatgagatgcacacagtttcttcacctgcaacaatgaaagaaacaaaaccacatagaacgcgtccccaagctaattatctgtgtggattgaaaggacgtcgaatgcatcatcattcatctatgtagaaacttgatcgatagatatggcgtgttgcatctccttcatttgttcattcgcgttacggtggcataaatgttactactattatttatcaaggaagtggaaaataacatgttttacactatgaagttttgttggacatatttgatgatgaagacgagggaaatactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="99525" stop="98353"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99325" g_stop="99315" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99314" i_stop="99218" i_length="97">
            <donor d_prob="0.989" d_score="0.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99217" g_stop="98653" g_length="565"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="576" r_length="565" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E266207" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266207" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99325" e_stop="99315"/>
          <exon e_start="99217" e_stop="98653"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGCACGAGGTAACTATTACCTAACCGTCTTCCATGTAAACAATAATTGAATCATTCCGACAAATTGGAAACTGGAAATGATGTGTAGTTGAAAATGTTTCGACAGGTCACTGTACCATTTTTAGTGTTACATGGGGAAGCAGACATAGTAACTGATCCAGAAATAAGTAAGGCTTTATACGAGCAAGCGAGTAGCAAAGACAAGACTATAAAACTCTATCCAGGAATGTGGCATGGTTTGACATATGGTGAGCCAGAAGAAAACATTGAAATCGTATTTTCAGATATCATCTCGTGGCTTGACAAGCGAAATGGAGAGAATACTGGTGATGCTAGTTTAATCGAGAGATCAGTTTGTCGAGCTACATCTACTCCTCCATATGAGATGCACACAGTTTCTTCACCTGCAACAATGAAAGAAACAAAACCACATAGAACGCGTCCCCAAGCTAATTATCTGTGTGGATTGAAAGGACGTCGAATGCATCATCATTCATCTATGTAGAAACTTGATCGATAGATATGGCGTGTTGCATCTCCTTCATTTGTTCATTCGCGTTACGGTGGCATAAATGTTACTACTATTATTTATCAAGGAAGTGGAAAATAACATGTTTTACACTATGAAGTTTTGTTGGACATATTTGATGATGAAGACGAGGGAAATACTT</genome_strand>
        <mrna_strand>GTTTGCACGAA.................................................................................................GTCACTGTACCATTTTTAGTGTTACATGGGGAAGCAGACATAGTAACTGATCCAGAAATAAGTAAGGCTTTATACGAGCAAGCGAGTAGCAAAGACAAGACTATAAAACTCTATCCAGGAATGTGGCATGGTTTGACATATGGTGAGCCAGAAGAAAACATTGAAATCGTATTTTCAGATATCATCTCGTGGCTTGACAAGCGAAATGGAGAGAATACTGGTGATGCTAGTTTAATCGAGAGATCAGTTTGTCGAGCTACATCTACTCCTCCATATGAGATGCACACAGTTTCTTCACCTGCAACAATGAAAGAAACAAAACCACATAGAACGCGTCCCCAAGCTAATTATCTGTGTGGATTGAAAGGACGTCGAATGCATCATCATTCATCTATGTAGAAACTTGATCGATAGATATGGCGTGTTGCATCTCCTTCATTTGTTCATTCGCGTTACGGTGGCATAAATGTTACTACTATTATTTATCAAGGAAGTGGAAAATAACATGTTTTACACTATGAAGTTTTGTTGGACATATTTGATGATGAAGACGAGGGAAATACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E305648" ref_strand="+" ref_description="SGN-E305648 [cLEX-14-P19]">
      <seq>agaatactggtgatgctagtttaatcgagagatcagtttgtcgagctacatctactcctccatatgagatgcacacagtttcttcacctgcaacaatgaaagaaacaaaaccacatagaacgcgtccccaagctaattatctgtgtggattgaaaggacgtcgaatgcatcatcattcatctatgtagaaacttgatcgatagatatggcgtgttgcatctccttcatttgttcattcgcgttacggtggcataaatgttactactattatttatcaaggaagtggaaaataacatgttttacactatgaagttttgttggacatatttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="99306" stop="98375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99006" g_stop="98675" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="332" r_length="332" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E305648" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>332</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305648" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99006" e_stop="98675"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATACTGGTGATGCTAGTTTAATCGAGAGATCAGTTTGTCGAGCTACATCTACTCCTCCATATGAGATGCACACAGTTTCTTCACCTGCAACAATGAAAGAAACAAAACCACATAGAACGCGTCCCCAAGCTAATTATCTGTGTGGATTGAAAGGACGTCGAATGCATCATCATTCATCTATGTAGAAACTTGATCGATAGATATGGCGTGTTGCATCTCCTTCATTTGTTCATTCGCGTTACGGTGGCATAAATGTTACTACTATTATTTATCAAGGAAGTGGAAAATAACATGTTTTACACTATGAAGTTTTGTTGGACATATTTGAT</genome_strand>
        <mrna_strand>AGAATACTGGTGATGCTAGTTTAATCGAGAGATCAGTTTGTCGAGCTACATCTACTCCTCCATATGAGATGCACACAGTTTCTTCACCTGCAACAATGAAAGAAACAAAACCACATAGAACGCGTCCCCAAGCTAATTATCTGTGTGGATTGAAAGGACGTCGAATGCATCATCATTCATCTATGTAGAAACTTGATCGATAGATATGGCGTGTTGCATCTCCTTCATTTGTTCATTCGCGTTACGGTGGCATAAATGTTACTACTATTATTTATCAAGGAAGTGGAAAATAACATGTTTTACACTATGAAGTTTTGTTGGACATATTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E459113" ref_strand="+" ref_description="SGN-E459113 [cPRO-33-I22]">
      <seq>gtgaagcctcatccaatggttataagcttgctaactaaagtggaggatgtaataccaagatggaaaatagtcccgacaaaggatgtcattgattcggccttcaaggaacccgctaaaagggaagaggtacgcgggaacaagttaatttatcaggcaaaaccaagactgaagacagctttggaaatgctgagaaccagcatgcaccttgaggaaagtttgcacgaggtcactctaccatttttagtgttacatggagaagcagacatagtaactgatccagaaataagcaaggctttatacgagcaagcgagtagcaaggacaagactataaaactctatccaggaatgtggcacggtttgacatatggtgagccagaagaaaacattgaaatcgtcttttcagatatcatctcgtggcttgacaagcgaaatggagagaacattgatgatgctagtttaatcgagagatcagtttgtctagctacatctactcctccatatgagatgcacacaatttcttcacctataacaatgaaagaaacaaaaccacagagaacacgtccccaagctaattatctgtgtggatggaaaggacgtcggatgcatcatcattcatctatgtagaaacttgatcgatagatatggcgtgttgcatctccttcatttgttcatttgcgttacagtgacataaatgttacttctatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="99963" stop="98437"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99663" g_stop="99538" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99537" i_stop="99414" i_length="124">
            <donor d_prob="0.974" d_score="0.96"/>
            <acceptor a_prob="0.947" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99413" g_stop="99315" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="225" r_length="99" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99314" i_stop="99218" i_length="97">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.938" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99217" g_stop="98737" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="706" r_length="481" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E459113" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E459113" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99663" e_stop="99538"/>
          <exon e_start="99413" e_stop="99315"/>
          <exon e_start="99217" e_stop="98737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAAGCCACATCCTGTGGTTATAAGCTTACTAACTAAAGTGGAGGATGTCATACCAAGATGGAAGATAGTCCCTACGAAGGATGTCATTGATTCGGCCTTCAAGGACCCCGCTAAAAGGGAAGAGGTGAGGCTAATTGTTAAGTTAATATGCAACATTTGCTAGCTTCCAAGTATTAATGATGTGCGGCATCCAATTCTTGTCCTCCATCAAAACATGATGTCCATTTCTTGTCATTTTGCAAGTGTAGGTACGCGAGAACAAGTTAATTTATCAGGCAAAGCCAAGACTAAAGACAGCTTTGGAAATGCTAAGAACCAGCATGCACCTTGAGGAAAGTTTGCACGAGGTAACTATTACCTAACCGTCTTCCATGTAAACAATAATTGAATCATTCCGACAAATTGGAAACTGGAAATGATGTGTAGTTGAAAATGTTTCGACAGGTCACTGTACCATTTTTAGTGTTACATGGGGAAGCAGACATAGTAACTGATCCAGAAATAAGTAAGGCTTTATACGAGCAAGCGAGTAGCAAAGACAAGACTATAAAACTCTATCCAGGAATGTGGCATGGTTTGACATATGGTGAGCCAGAAGAAAACATTGAAATCGTATTTTCAGATATCATCTCGTGGCTTGACAAGCGAAATGGAGAGAATACTGGTGATGCTAGTTTAATCGAGAGATCAGTTTGTCGAGCTACATCTACTCCTCCATATGAGATGCACACAGTTTCTTCACCTGCAACAATGAAAGAAACAAAACCACATAGAACGCGTCCCCAAGCTAATTATCTGTGTGGATTGAAAGGACGTCGAATGCATCATCATTCATCTATGTAGAAACTTGATCGATAGATATGGCGTGTTGCATCTCCTTCATTTGTTCATTCGCGTTACGGTGGCATAAATGTTACTACTATTA</genome_strand>
        <mrna_strand>GTGAAGCCTCATCCAATGGTTATAAGCTTGCTAACTAAAGTGGAGGATGTAATACCAAGATGGAAAATAGTCCCGACAAAGGATGTCATTGATTCGGCCTTCAAGGAACCCGCTAAAAGGGAAGAG............................................................................................................................GTACGCGGGAACAAGTTAATTTATCAGGCAAAACCAAGACTGAAGACAGCTTTGGAAATGCTGAGAACCAGCATGCACCTTGAGGAAAGTTTGCACGAG.................................................................................................GTCACTCTACCATTTTTAGTGTTACATGGAGAAGCAGACATAGTAACTGATCCAGAAATAAGCAAGGCTTTATACGAGCAAGCGAGTAGCAAGGACAAGACTATAAAACTCTATCCAGGAATGTGGCACGGTTTGACATATGGTGAGCCAGAAGAAAACATTGAAATCGTCTTTTCAGATATCATCTCGTGGCTTGACAAGCGAAATGGAGAGAACATTGATGATGCTAGTTTAATCGAGAGATCAGTTTGTCTAGCTACATCTACTCCTCCATATGAGATGCACACAATTTCTTCACCTATAACAATGAAAGAAACAAAACCACAGAGAACACGTCCCCAAGCTAATTATCTGTGTGGATGGAAAGGACGTCGGATGCATCATCATTCATCTATGTAGAAACTTGATCGATAGATATGGCGTGTTGCATCTCCTTCATTTGTTCATTTGCGTTACAGTGACATAAATGTTACTTCTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E374304" ref_strand="+" ref_description="SGN-E374304 [TUS-33-J20]">
      <seq>agaatactggtgatgctagtttaatcgagagatcagtttgtcgagctacatctactcctccatatgagatgcacacnagtttcttcacctgcaacaatgaaagaaacaaaaccacatagaacgcgtccccaagctaattatctgtgtggattgaaaggacgtcgaatgcatcatcattcatctatgtagaaacttgatcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="99306" stop="98507"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99006" g_stop="98807" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E374304" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>200</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374304" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99006" e_stop="98807"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATACTGGTGATGCTAGTTTAATCGAGAGATCAGTTTGTCGAGCTACATCTACTCCTCCATATGAGATGCACAC-AGTTTCTTCACCTGCAACAATGAAAGAAACAAAACCACATAGAACGCGTCCCCAAGCTAATTATCTGTGTGGATTGAAAGGACGTCGAATGCATCATCATTCATCTATGTAGAAACTTGATCGA</genome_strand>
        <mrna_strand>AGAATACTGGTGATGCTAGTTTAATCGAGAGATCAGTTTGTCGAGCTACATCTACTCCTCCATATGAGATGCACACNAGTTTCTTCACCTGCAACAATGAAAGAAACAAAACCACATAGAACGCGTCCCCAAGCTAATTATCTGTGTGGATTGAAAGGACGTCGAATGCATCATCATTCATCTATGTAGAAACTTGATCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E450632" ref_strand="+" ref_description="SGN-E450632 [cSTS-9-N22]">
      <seq>cgaggtttctgtatggggagtcgatgggaggggccgtggctcttttaaccacaagaaggatccttccttttggcatggtgctcttctggttgcaccgatgtgtaagatatctgagaaggtgaagcctcatccaatggttataagcttgctaactaaagtggaggatgtaataccaagatggaaaatagtcccgacaaaggatgtcattgattcggccttcaaggaacccgctaaaagggaagaggtacgcgggaacaagttaatttatcaggcaaaaccaagactgaagacagctttggaaatgctgagaaccagcatgcaccttgaggaaagtttgcacgaggtcactctaccatttttagtgttacatggagaagcagacatagtaactgatccagaaataagcaaggctttatacgagcaagcgagtagcaaggacaagactataaaactctatccaggaatgtggcacggtttgacatatggtgagccagaagaaaacattgaaatcgtcttttcagatatcatctcgtggcttgacaagcgaaatggagagaacattgatgatgctagtttaatcgagagatcagtttgtctagctacatctactcctccatatgagatgcacacaatttcttcacctatnacaatgaaagaaacaaaaccacagagaacacgtccccaagctaattatctgtgtggatggaaaagacgtcggatgcatcatcattcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="100206" stop="98526"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99909" g_stop="99803" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99802" i_stop="99676" i_length="127">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99675" g_stop="99538" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="244" r_length="138" r_score="0.935"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99537" i_stop="99414" i_length="124">
            <donor d_prob="0.974" d_score="0.96"/>
            <acceptor a_prob="0.947" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99413" g_stop="99315" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="343" r_length="99" r_score="0.960"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99314" i_stop="99218" i_length="97">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.938" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99217" g_stop="98826" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="735" r_length="392" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E450632" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E450632" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99909" e_stop="99803"/>
          <exon e_start="99675" e_stop="99538"/>
          <exon e_start="99413" e_stop="99315"/>
          <exon e_start="99217" e_stop="98826"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGGTTTCTGTATGGGGAGTCGATGGGAGGGGCCGTGGCTCTTTTAACACACAAGAAGGATCCTTCCTTTTGGCATGGTGCTCTTCTGGTTGCACCTATGTGTAAGGTAGGCCTATTGAGATTTTTAGTCTCAACTCATTTACTGTAATATATATGCTTTAGTGCTTGCATTTAGTATTGAGGGACCATTGGAAGTCGGTTATGGTGTTGCTAATGCATTGCAAAATCACCAGATATCTGAGAAGGTGAAGCCACATCCTGTGGTTATAAGCTTACTAACTAAAGTGGAGGATGTCATACCAAGATGGAAGATAGTCCCTACGAAGGATGTCATTGATTCGGCCTTCAAGGACCCCGCTAAAAGGGAAGAGGTGAGGCTAATTGTTAAGTTAATATGCAACATTTGCTAGCTTCCAAGTATTAATGATGTGCGGCATCCAATTCTTGTCCTCCATCAAAACATGATGTCCATTTCTTGTCATTTTGCAAGTGTAGGTACGCGAGAACAAGTTAATTTATCAGGCAAAGCCAAGACTAAAGACAGCTTTGGAAATGCTAAGAACCAGCATGCACCTTGAGGAAAGTTTGCACGAGGTAACTATTACCTAACCGTCTTCCATGTAAACAATAATTGAATCATTCCGACAAATTGGAAACTGGAAATGATGTGTAGTTGAAAATGTTTCGACAGGTCACTGTACCATTTTTAGTGTTACATGGGGAAGCAGACATAGTAACTGATCCAGAAATAAGTAAGGCTTTATACGAGCAAGCGAGTAGCAAAGACAAGACTATAAAACTCTATCCAGGAATGTGGCATGGTTTGACATATGGTGAGCCAGAAGAAAACATTGAAATCGTATTTTCAGATATCATCTCGTGGCTTGACAAGCGAAATGGAGAGAATACTGGTGATGCTAGTTTAATCGAGAGATCAGTTTGTCGAGCTACATCTACTCCTCCATATGAGATGCACACAGTTTCTTCACCTGCAACAATGAAAGAAACAAAACCACATAGAACGCGTCCCCAAGCTAATTATCTGTGTGGATTGAAAGGACGTCGAATGCATCATCATTCATC</genome_strand>
        <mrna_strand>CGAGGTTTCTGTATGGGGAGTCGATGGGAGGGGCCGTGGCTCTTTTAAC-CACAAGAAGGATCCTTCCTTTTGGCATGGTGCTCTTCTGGTTGCACCGATGTGTAAG...............................................................................................................................ATATCTGAGAAGGTGAAGCCTCATCCAATGGTTATAAGCTTGCTAACTAAAGTGGAGGATGTAATACCAAGATGGAAAATAGTCCCGACAAAGGATGTCATTGATTCGGCCTTCAAGGAACCCGCTAAAAGGGAAGAG............................................................................................................................GTACGCGGGAACAAGTTAATTTATCAGGCAAAACCAAGACTGAAGACAGCTTTGGAAATGCTGAGAACCAGCATGCACCTTGAGGAAAGTTTGCACGAG.................................................................................................GTCACTCTACCATTTTTAGTGTTACATGGAGAAGCAGACATAGTAACTGATCCAGAAATAAGCAAGGCTTTATACGAGCAAGCGAGTAGCAAGGACAAGACTATAAAACTCTATCCAGGAATGTGGCACGGTTTGACATATGGTGAGCCAGAAGAAAACATTGAAATCGTCTTTTCAGATATCATCTCGTGGCTTGACAAGCGAAATGGAGAGAACATTGATGATGCTAGTTTAATCGAGAGATCAGTTTGTCTAGCTACATCTACTCCTCCATATGAGATGCACACAATTTCTTCACCTATNACAATGAAAGAAACAAAACCACAGAGAACACGTCCCCAAGCTAATTATCTGTGTGGATGGAAAAGACGTCGGATGCATCATCATTCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E266941" ref_strand="+" ref_description="SGN-E266941 [cLEI-7-M18]">
      <seq>aaggtgaagccacatcctgtggttataagcttactaactaaagtggaggatgtcataccaagatggaagatagtccctacgaaggatgtcattgattcggccttcaaggaccccgctaaaagggaagaggtacgcgagaacaagttaatttatcaggcaaagccaagactaaagacagctttggaaatgctaagaaccagcatgcaccttgaggaaagtttgcacgaggtcactgtaccatttttagtgttacatggggaagcagacatagtaactgatccagaaataagtaaggctttatacgagcaagcgagtagcaaagacaagactataaaactctatccaggaatgtggcatggtttgacatatggtgagccagaagaaaacattgaaatcgtattttcagatatcatctcgtggcttgacaagcgaaatggagagaatactggtgatgctagtttaatcgagagatcagtttgtcgagctacatctactcctccatatgagatgcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="99966" stop="98632"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99666" g_stop="99538" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99537" i_stop="99414" i_length="124">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99413" g_stop="99315" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="228" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99314" i_stop="99218" i_length="97">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99217" g_stop="98932" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="514" r_length="286" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E266941" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266941" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99666" e_stop="99538"/>
          <exon e_start="99413" e_stop="99315"/>
          <exon e_start="99217" e_stop="98932"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGTGAAGCCACATCCTGTGGTTATAAGCTTACTAACTAAAGTGGAGGATGTCATACCAAGATGGAAGATAGTCCCTACGAAGGATGTCATTGATTCGGCCTTCAAGGACCCCGCTAAAAGGGAAGAGGTGAGGCTAATTGTTAAGTTAATATGCAACATTTGCTAGCTTCCAAGTATTAATGATGTGCGGCATCCAATTCTTGTCCTCCATCAAAACATGATGTCCATTTCTTGTCATTTTGCAAGTGTAGGTACGCGAGAACAAGTTAATTTATCAGGCAAAGCCAAGACTAAAGACAGCTTTGGAAATGCTAAGAACCAGCATGCACCTTGAGGAAAGTTTGCACGAGGTAACTATTACCTAACCGTCTTCCATGTAAACAATAATTGAATCATTCCGACAAATTGGAAACTGGAAATGATGTGTAGTTGAAAATGTTTCGACAGGTCACTGTACCATTTTTAGTGTTACATGGGGAAGCAGACATAGTAACTGATCCAGAAATAAGTAAGGCTTTATACGAGCAAGCGAGTAGCAAAGACAAGACTATAAAACTCTATCCAGGAATGTGGCATGGTTTGACATATGGTGAGCCAGAAGAAAACATTGAAATCGTATTTTCAGATATCATCTCGTGGCTTGACAAGCGAAATGGAGAGAATACTGGTGATGCTAGTTTAATCGAGAGATCAGTTTGTCGAGCTACATCTACTCCTCCATATGAGATGCACA</genome_strand>
        <mrna_strand>AAGGTGAAGCCACATCCTGTGGTTATAAGCTTACTAACTAAAGTGGAGGATGTCATACCAAGATGGAAGATAGTCCCTACGAAGGATGTCATTGATTCGGCCTTCAAGGACCCCGCTAAAAGGGAAGAG............................................................................................................................GTACGCGAGAACAAGTTAATTTATCAGGCAAAGCCAAGACTAAAGACAGCTTTGGAAATGCTAAGAACCAGCATGCACCTTGAGGAAAGTTTGCACGAG.................................................................................................GTCACTGTACCATTTTTAGTGTTACATGGGGAAGCAGACATAGTAACTGATCCAGAAATAAGTAAGGCTTTATACGAGCAAGCGAGTAGCAAAGACAAGACTATAAAACTCTATCCAGGAATGTGGCATGGTTTGACATATGGTGAGCCAGAAGAAAACATTGAAATCGTATTTTCAGATATCATCTCGTGGCTTGACAAGCGAAATGGAGAGAATACTGGTGATGCTAGTTTAATCGAGAGATCAGTTTGTCGAGCTACATCTACTCCTCCATATGAGATGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E466604" ref_strand="+" ref_description="SGN-E466604 [cPRO-25-A24]">
      <seq>gtgaagcctcatccaatggttataagcttgctaactaaagtggaggatgtaataccaagatggaaaatagtcccgacaaaggatgtcattgattcggccttcaaggaacccgctaaaagggaagaggtacgcgggaacaagttaatttatcaggcaaaaccaagactgaagacagctttggaaatgctgagaaccagcatgcaccttgaggaaagtttgcacgaggtcactctaccatttttagtgttacatggagaagcagacatagtaactgatccagaaataagcaaggctttatacgagcaagcgagtagcaaggacaagactataaaactctatccaggaatgtggcacggtttgacatatggtgagccagaagaaaacattgaaatcgtcttttcagatatcatctcgtggcttgacaagcgaaatggagagaacattgatgatgctagtttaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="99963" stop="98682"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99663" g_stop="99538" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99537" i_stop="99414" i_length="124">
            <donor d_prob="0.974" d_score="0.96"/>
            <acceptor a_prob="0.947" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99413" g_stop="99315" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="225" r_length="99" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99314" i_stop="99218" i_length="97">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.938" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99217" g_stop="98982" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="461" r_length="236" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E466604" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E466604" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99663" e_stop="99538"/>
          <exon e_start="99413" e_stop="99315"/>
          <exon e_start="99217" e_stop="98982"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAAGCCACATCCTGTGGTTATAAGCTTACTAACTAAAGTGGAGGATGTCATACCAAGATGGAAGATAGTCCCTACGAAGGATGTCATTGATTCGGCCTTCAAGGACCCCGCTAAAAGGGAAGAGGTGAGGCTAATTGTTAAGTTAATATGCAACATTTGCTAGCTTCCAAGTATTAATGATGTGCGGCATCCAATTCTTGTCCTCCATCAAAACATGATGTCCATTTCTTGTCATTTTGCAAGTGTAGGTACGCGAGAACAAGTTAATTTATCAGGCAAAGCCAAGACTAAAGACAGCTTTGGAAATGCTAAGAACCAGCATGCACCTTGAGGAAAGTTTGCACGAGGTAACTATTACCTAACCGTCTTCCATGTAAACAATAATTGAATCATTCCGACAAATTGGAAACTGGAAATGATGTGTAGTTGAAAATGTTTCGACAGGTCACTGTACCATTTTTAGTGTTACATGGGGAAGCAGACATAGTAACTGATCCAGAAATAAGTAAGGCTTTATACGAGCAAGCGAGTAGCAAAGACAAGACTATAAAACTCTATCCAGGAATGTGGCATGGTTTGACATATGGTGAGCCAGAAGAAAACATTGAAATCGTATTTTCAGATATCATCTCGTGGCTTGACAAGCGAAATGGAGAGAATACTGGTGATGCTAGTTTAAT</genome_strand>
        <mrna_strand>GTGAAGCCTCATCCAATGGTTATAAGCTTGCTAACTAAAGTGGAGGATGTAATACCAAGATGGAAAATAGTCCCGACAAAGGATGTCATTGATTCGGCCTTCAAGGAACCCGCTAAAAGGGAAGAG............................................................................................................................GTACGCGGGAACAAGTTAATTTATCAGGCAAAACCAAGACTGAAGACAGCTTTGGAAATGCTGAGAACCAGCATGCACCTTGAGGAAAGTTTGCACGAG.................................................................................................GTCACTCTACCATTTTTAGTGTTACATGGAGAAGCAGACATAGTAACTGATCCAGAAATAAGCAAGGCTTTATACGAGCAAGCGAGTAGCAAGGACAAGACTATAAAACTCTATCCAGGAATGTGGCACGGTTTGACATATGGTGAGCCAGAAGAAAACATTGAAATCGTCTTTTCAGATATCATCTCGTGGCTTGACAAGCGAAATGGAGAGAACATTGATGATGCTAGTTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E616512" ref_strand="+" ref_description="SGN-E616512 [89979]">
      <seq>tctacaaaaaaatacaattgcactcataaggccataatacacagatctgtcacttacccatgaatattgagtcacatttctgagttggggtttggttattttttctgaaaatatacaatgggtgttgaatatcatgaggtatttataaggaattcaagagatgtacaactcttcacttgtagatggttgcccttttcttctccaaaagcccttgttttcctttgccatggttatggcatggaatgcagtagattcatgagaggtgttgggacaaagctggcaaataatggatacgcggtgtttggaatagattatgaaggtcatggacggtcagcgggtgtgcgctgttacatcaaaaagtttgacaacattgtcaacgactgcagcgagtttttcaagtcagtttgtgcgcaggaggagtatagagagaaaacacggtttctgtatggggagtcgatgggaggtgccgtggctcttttaacacacaagaaggatccttccttttggcatggtgctcttctggttgcaccgatgtgtaagatatctgagaaggtgaagcctcatccgatggttataagcttactaactaaagtggaggatgtaataccaagatggaagatagtcccgacaaaggatgtcattgattcggccttcaaggaaccagctaaaagggaagaggtacgcgggaacaagttaatttatcaggcaaagccaagactgaagacagctttggaaatgctgagaaccagcatgcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="103516" stop="99036"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103225" g_stop="103088" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="0.891"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103087" i_stop="102966" i_length="122">
            <donor d_prob="0.489" d_score="0.98"/>
            <acceptor a_prob="0.818" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102965" g_stop="102875" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="229" r_length="91" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102874" i_stop="102797" i_length="78">
            <donor d_prob="0.823" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102796" g_stop="102764" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="262" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102763" i_stop="100341" i_length="2423">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="100340" g_stop="100194" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="409" r_length="147" r_score="0.966"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="100193" i_stop="99934" i_length="260">
            <donor d_prob="0.935" d_score="0.98"/>
            <acceptor a_prob="0.213" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99933" g_stop="99803" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="540" r_length="131" r_score="0.977"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="99802" i_stop="99676" i_length="127">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="99675" g_stop="99538" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="678" r_length="138" r_score="0.942"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="99537" i_stop="99414" i_length="124">
            <donor d_prob="0.974" d_score="0.94"/>
            <acceptor a_prob="0.947" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="99413" g_stop="99336" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="679" r_stop="756" r_length="78" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E616512" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>756</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E616512" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103225" e_stop="103088"/>
          <exon e_start="102965" e_stop="102875"/>
          <exon e_start="102796" e_stop="102764"/>
          <exon e_start="100340" e_stop="100194"/>
          <exon e_start="99933" e_stop="99803"/>
          <exon e_start="99675" e_stop="99538"/>
          <exon e_start="99413" e_stop="99336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCTGTAAAAATAATTGCATCTATAAGGCCATAATACACAGATCTGTTACTTACCCATGAATGTTGAGTCACATTTCTGAGTTGGGATTTGGTTATTTTTTCTGAAAATATACAATGGGTGTTGAATATCATGAGGTGGGTTTTTGTTCTTTTTGCTTTTTTTCTTCAATGAGCATGCATATTTTTCTTCTTTACTTTGTACAATATGGTGTTTTTCTTAATAAAAATTGTGTCTTTACTTACATCAATGGCATTAGGTATTTATAAGGAATTCAAGAGGTGTACAACTCTTCACTTGTAGATGGTTGCCCTTTTCTTCTCCAAAAGCTCTTGTTTTCCTTTGCCATGGTTTGTATTTTTTATTTTTTTTGGTTTTTGTTGAAATTTGATTTAACAAATTGATTAATGATGTCGTTGTTGTTGTAGGTTATGGCATGGAATGCAGTAGATTCATGAGAGGTATAGTAATAAATGTTTCCTCTTTTAATTTGTTTTCACTTTCATGGCCAACTTTTCTGTAGAAATGTTTGTATTCCTTGTGGTTTTAATGTTTGGATGGATAATCGGATTCATATGAATTCAATACTTTTGAAGTACGGTAAACAATGAATATGAATTCGTAGTTAAACTTTGAACACATAAAGTTTAAATCTTGAATCGGATTCTGGTGCCATCAATGCATGTCATGACTTTTTCCTCCTACTTCTTGTGACTTGATATATATGTCATTCAACAGATTGTTTTACTTCTACCATCTTTTTTCTTCCTGTTGAGTTTGTCACAGAGTAACAGTGAAAAAGGAACCCACTTTTTATGCTTTTGGGGTTCATTTCTTTTTCTTTGTTGATCACTCAGTTGAATCCCGATTAAATTTGGATTCGCGCCAGAAGTCCAACAATAGGGATAAAGCGTTTCCTAACAAAGTGTATTCTGTAGCTAGGACACTTGAACCCGAGCTGTGGTTAAGAATGAAGGAGAACTTAGCACTCCACTACAACCCTTGTTGGTCTTGGTGGTCCATTTATGTGGTGAGGTGACCTTAATTTTAGTGTTGTACAATATGGGCCATTTTCCTGCTACACTTGCCTATATTTTTATTTTAGGTGACCAACCATACCAGTAAAATTTATGTCTCTTATCATATCTTTTTAAAAGTCCTTTTTTTTTATATATATTTGTGAACAGTTGGCTGAATACAATAATTTAGAGGAGTTTCAGTTGGTGCCCATATCTTGTCATTTACCTATTTTGTTGAGAACTTCTAATACTTTTTCAGTCTCTATTTTGTTTTATATTCGATAAAGATGATCTTAAATAGAGCGACATGGACAGTGAAGATTCCTATAGCCAACTGGCTTGCTTGAGATTGAAGTGGAGTTTCATGTTAGCTATCTTGGCAGTATGTGCATTATGTTTATCTGGTTGTGGGATATTATTATACAAGAATATCTTTTTTATAGGGCACAATTATTGGTGATATATAATAATGCAATTGTTAGGAGCTAGTAGTTAAAAATGCAACGAAAAATGGTTCTCAAATTGAATGCCAGACTGAAAACTCACCTAACATACTGATCCTCTCATACTGAAGGTACTATAGATTTGCTGAAACAAAGTAATTTTTACCCTTGAATAACATCCTTATATGGTTTACAGCTGCATGATTAGTCTGTTTCTTGTCCTTTTTTGGTTAATTTGCTAATTAACAGCTATGTTGGAACTTCATTGTTTGCCTACTAAAATAAGGAGGATTAATGGTTTGCTGGTAGGTTGGTTGACTATTGAGAAACATAATAAAATTAAAAGTCCTATCTTGGTAGTTTGATAGATTAATTAGGTTAGCAAATTAGTTGGGCCCTATAAGTAACCTCAATTAAAGATTGCTTCACACACCAAAATTTGTGGGACACTTTGAATTCAACTTAACAAGTCAAATCATAAAAGTTTAAAACATAACATAGATTTTAATGGTAGGTAAGTATGATAGGTACATCTGAAATCATTTAAGAGTCATCTAACTTTAAGACTTTGACTATTCAAAAGAAAAAAGTAAACAAGAAAAATGAAATATATTTTAAAATGTTGCTTAAGCCTTGACAAACAAAGTTACCTTGTACCTCTGTTGGTATGAGGTAGTAGGTGCCAGAAGAATAGTCGAGGAGGTGCGTGTGTACTAGCTCGGACACGACTATCATGAAAACAGATATTCTGAAATGTTACTTGACCTGTTCAACTTGGCTTCCAGTGAGAAAAGCTTCTGGTTTTCTTATTCTTGGACCAGGGGATTTTAGCTGCTAGTCTATTTTGGAGTTTTTTGTTCTGACCTGGACCACCTTGAGTATTAGCATTCTTTCTCTAACCTCTACCAAGTTTTTCTGTTGACAAATGATGTGTCATCAAACATTTGCTTTTCCTTCTATTTCTGTTTTTCAAAAAAAGAATAGTAGGTGGGACTTGGAGATGGGAATATTACCTTATACACATAACTGAAATACTGTTGTGACTTTACAGTGTTTGACGTTGCTCAATCCATCTGTCTTGAGTGGTTCAACCAACTGTTGGAGGAATCTTCGGTTGAATTCTCATATGGTCACTCAACTTATAGTTATTATCTCAAAAAGTCATTTATATTCTTGATTTCAATTTTCTTCAACAACGATGGTAACTTTCTGAGATCATAACTAAAAGTTGAGTGACATGAGAAATCAAGTTTGTAATTTTGTCTAGCCCCATATACCTAAGGAGAGTCTCACACAATTGCTACGTATGCGTGCATGAAGCCAATAGATTGATGCTCTTTCTTGTGCACAATAGAATTGTGAAAGCTCGTGGCACAGATCCAACTTAACATAGATATTGTACATTTGTACTATTATGGATAGGTGTTGGGACAAAGCTGGCAGATAATGGATATGCGGTGTTTGGAATAGATTATGAAGGTCATGGACGATCAGCGGGTGCGCGCTGTTACATCAAAAAGTTTGACAACATTGTCAATGACTGCAGCGAGTTTTTCAAGTCAGTTTGTGGTAAGCTACCAAATGCCCTCTTGGTTCACAAGTAGTCTAACCCTCATTGTTATCAGTTAAGTATAGACCACCTGACCTCAGAAGCTGTCACAGTGACGAATAATCCATCTTTGATTTTCCTTTCGCTTGGGATTTTTTTGGAGTAGCTTTATTTAAGTTGAATATTTTTCAGCCTGATAGGTGTGGTTACATCTTACAATTGTTAAAAAGCTTCAGACTTGTTATCCTCTTGCTAAAATGCCCGTTCTCTTGAAAATCAGCGCAGGAGGAGTATAGAGAGAAAAAACGGTTTCTGTATGGGGAGTCGATGGGAGGGGCCGTGGCTCTTTTAACACACAAGAAGGATCCTTCCTTTTGGCATGGTGCTCTTCTGGTTGCACCTATGTGTAAGGTAGGCCTATTGAGATTTTTAGTCTCAACTCATTTACTGTAATATATATGCTTTAGTGCTTGCATTTAGTATTGAGGGACCATTGGAAGTCGGTTATGGTGTTGCTAATGCATTGCAAAATCACCAGATATCTGAGAAGGTGAAGCCACATCCTGTGGTTATAAGCTTACTAACTAAAGTGGAGGATGTCATACCAAGATGGAAGATAGTCCCTACGAAGGATGTCATTGATTCGGCCTTCAAGGACCCCGCTAAAAGGGAAGAGGTGAGGCTAATTGTTAAGTTAATATGCAACATTTGCTAGCTTCCAAGTATTAATGATGTGCGGCATCCAATTCTTGTCCTCCATCAAAACATGATGTCCATTTCTTGTCATTTTGCAAGTGTAGGTACGCGAGAACAAGTTAATTTATCAGGCAAAGCCAAGACTAAAGACAGCTTTGGAAATGCTAAGAACCAGCATGCAC</genome_strand>
        <mrna_strand>TCTACAAAAAAATACAATTGCACTCATAAGGCCATAATACACAGATCTGTCACTTACCCATGAATATTGAGTCACATTTCTGAGTTGGGGTTTGGTTATTTTTTCTGAAAATATACAATGGGTGTTGAATATCATGAG..........................................................................................................................GTATTTATAAGGAATTCAAGAGATGTACAACTCTTCACTTGTAGATGGTTGCCCTTTTCTTCTCCAAAAGCCCTTGTTTTCCTTTGCCATG..............................................................................GTTATGGCATGGAATGCAGTAGATTCATGAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGGGACAAAGCTGGCAAATAATGGATACGCGGTGTTTGGAATAGATTATGAAGGTCATGGACGGTCAGCGGGTGTGCGCTGTTACATCAAAAAGTTTGACAACATTGTCAACGACTGCAGCGAGTTTTTCAAGTCAGTTTGTG....................................................................................................................................................................................................................................................................CGCAGGAGGAGTATAGAGAGAAAACACGGTTTCTGTATGGGGAGTCGATGGGAGGTGCCGTGGCTCTTTTAACACACAAGAAGGATCCTTCCTTTTGGCATGGTGCTCTTCTGGTTGCACCGATGTGTAAG...............................................................................................................................ATATCTGAGAAGGTGAAGCCTCATCCGATGGTTATAAGCTTACTAACTAAAGTGGAGGATGTAATACCAAGATGGAAGATAGTCCCGACAAAGGATGTCATTGATTCGGCCTTCAAGGAACCAGCTAAAAGGGAAGAG............................................................................................................................GTACGCGGGAACAAGTTAATTTATCAGGCAAAGCCAAGACTGAAGACAGCTTTGGAAATGCTGAGAACCAGCATGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E458518" ref_strand="+" ref_description="SGN-E458518 [cPRO-6-A19]">
      <seq>taatacacagatctgtcacttacccatgaatgtttatccatttctgagttggggtttggttattttttctgaaaatatacaatgggtgttgaatatcatgaggtatttataaggaattcaagaggtgtacaactcttcacttgtagatggttgcccttttcttctccaaaagcccttgttttcctttgccatggttatggcatggaatgcagtagattcatgagaggtgttgggacaaagctggcaaataatggatacgcggtgtttggaatagattatgaaggtcatggacacggtcagcggggtgcgcggtgttacatcaaaaagtttgacaacattgtcaacgactgcagtgagtttttcaagtcagtttgtgcgcaggaggagtatagagagaaaacacggtttctgtatggggagtcgatgggaggggccgtggctcttttaacacacaagaaggatccttccttttggcatggtgctcttctggttgcaccgatgtgtaagatatctgagaaggtgaagcctcatccaatggttataagcttgctaactaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="103491" stop="99325"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103191" g_stop="103088" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103087" i_stop="102966" i_length="122">
            <donor d_prob="0.489" d_score="0.98"/>
            <acceptor a_prob="0.818" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102965" g_stop="102875" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="193" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102874" i_stop="102797" i_length="78">
            <donor d_prob="0.823" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102796" g_stop="102764" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="226" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102763" i_stop="100341" i_length="2423">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="100340" g_stop="100194" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="376" r_length="150" r_score="0.918"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="100193" i_stop="99934" i_length="260">
            <donor d_prob="0.935" d_score="0.96"/>
            <acceptor a_prob="0.213" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99933" g_stop="99803" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="507" r_length="131" r_score="0.985"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="99802" i_stop="99676" i_length="127">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="99675" g_stop="99625" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="558" r_length="51" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E458518" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E458518" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103191" e_stop="103088"/>
          <exon e_start="102965" e_stop="102875"/>
          <exon e_start="102796" e_stop="102764"/>
          <exon e_start="100340" e_stop="100194"/>
          <exon e_start="99933" e_stop="99803"/>
          <exon e_start="99675" e_stop="99625"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATACACAGATCTGTTACTTACCCATGAATGTTGAGTCACATTTCTGAGTTGGGATTTGGTTATTTTTTCTGAAAATATACAATGGGTGTTGAATATCATGAGGTGGGTTTTTGTTCTTTTTGCTTTTTTTCTTCAATGAGCATGCATATTTTTCTTCTTTACTTTGTACAATATGGTGTTTTTCTTAATAAAAATTGTGTCTTTACTTACATCAATGGCATTAGGTATTTATAAGGAATTCAAGAGGTGTACAACTCTTCACTTGTAGATGGTTGCCCTTTTCTTCTCCAAAAGCTCTTGTTTTCCTTTGCCATGGTTTGTATTTTTTATTTTTTTTGGTTTTTGTTGAAATTTGATTTAACAAATTGATTAATGATGTCGTTGTTGTTGTAGGTTATGGCATGGAATGCAGTAGATTCATGAGAGGTATAGTAATAAATGTTTCCTCTTTTAATTTGTTTTCACTTTCATGGCCAACTTTTCTGTAGAAATGTTTGTATTCCTTGTGGTTTTAATGTTTGGATGGATAATCGGATTCATATGAATTCAATACTTTTGAAGTACGGTAAACAATGAATATGAATTCGTAGTTAAACTTTGAACACATAAAGTTTAAATCTTGAATCGGATTCTGGTGCCATCAATGCATGTCATGACTTTTTCCTCCTACTTCTTGTGACTTGATATATATGTCATTCAACAGATTGTTTTACTTCTACCATCTTTTTTCTTCCTGTTGAGTTTGTCACAGAGTAACAGTGAAAAAGGAACCCACTTTTTATGCTTTTGGGGTTCATTTCTTTTTCTTTGTTGATCACTCAGTTGAATCCCGATTAAATTTGGATTCGCGCCAGAAGTCCAACAATAGGGATAAAGCGTTTCCTAACAAAGTGTATTCTGTAGCTAGGACACTTGAACCCGAGCTGTGGTTAAGAATGAAGGAGAACTTAGCACTCCACTACAACCCTTGTTGGTCTTGGTGGTCCATTTATGTGGTGAGGTGACCTTAATTTTAGTGTTGTACAATATGGGCCATTTTCCTGCTACACTTGCCTATATTTTTATTTTAGGTGACCAACCATACCAGTAAAATTTATGTCTCTTATCATATCTTTTTAAAAGTCCTTTTTTTTTATATATATTTGTGAACAGTTGGCTGAATACAATAATTTAGAGGAGTTTCAGTTGGTGCCCATATCTTGTCATTTACCTATTTTGTTGAGAACTTCTAATACTTTTTCAGTCTCTATTTTGTTTTATATTCGATAAAGATGATCTTAAATAGAGCGACATGGACAGTGAAGATTCCTATAGCCAACTGGCTTGCTTGAGATTGAAGTGGAGTTTCATGTTAGCTATCTTGGCAGTATGTGCATTATGTTTATCTGGTTGTGGGATATTATTATACAAGAATATCTTTTTTATAGGGCACAATTATTGGTGATATATAATAATGCAATTGTTAGGAGCTAGTAGTTAAAAATGCAACGAAAAATGGTTCTCAAATTGAATGCCAGACTGAAAACTCACCTAACATACTGATCCTCTCATACTGAAGGTACTATAGATTTGCTGAAACAAAGTAATTTTTACCCTTGAATAACATCCTTATATGGTTTACAGCTGCATGATTAGTCTGTTTCTTGTCCTTTTTTGGTTAATTTGCTAATTAACAGCTATGTTGGAACTTCATTGTTTGCCTACTAAAATAAGGAGGATTAATGGTTTGCTGGTAGGTTGGTTGACTATTGAGAAACATAATAAAATTAAAAGTCCTATCTTGGTAGTTTGATAGATTAATTAGGTTAGCAAATTAGTTGGGCCCTATAAGTAACCTCAATTAAAGATTGCTTCACACACCAAAATTTGTGGGACACTTTGAATTCAACTTAACAAGTCAAATCATAAAAGTTTAAAACATAACATAGATTTTAATGGTAGGTAAGTATGATAGGTACATCTGAAATCATTTAAGAGTCATCTAACTTTAAGACTTTGACTATTCAAAAGAAAAAAGTAAACAAGAAAAATGAAATATATTTTAAAATGTTGCTTAAGCCTTGACAAACAAAGTTACCTTGTACCTCTGTTGGTATGAGGTAGTAGGTGCCAGAAGAATAGTCGAGGAGGTGCGTGTGTACTAGCTCGGACACGACTATCATGAAAACAGATATTCTGAAATGTTACTTGACCTGTTCAACTTGGCTTCCAGTGAGAAAAGCTTCTGGTTTTCTTATTCTTGGACCAGGGGATTTTAGCTGCTAGTCTATTTTGGAGTTTTTTGTTCTGACCTGGACCACCTTGAGTATTAGCATTCTTTCTCTAACCTCTACCAAGTTTTTCTGTTGACAAATGATGTGTCATCAAACATTTGCTTTTCCTTCTATTTCTGTTTTTCAAAAAAAGAATAGTAGGTGGGACTTGGAGATGGGAATATTACCTTATACACATAACTGAAATACTGTTGTGACTTTACAGTGTTTGACGTTGCTCAATCCATCTGTCTTGAGTGGTTCAACCAACTGTTGGAGGAATCTTCGGTTGAATTCTCATATGGTCACTCAACTTATAGTTATTATCTCAAAAAGTCATTTATATTCTTGATTTCAATTTTCTTCAACAACGATGGTAACTTTCTGAGATCATAACTAAAAGTTGAGTGACATGAGAAATCAAGTTTGTAATTTTGTCTAGCCCCATATACCTAAGGAGAGTCTCACACAATTGCTACGTATGCGTGCATGAAGCCAATAGATTGATGCTCTTTCTTGTGCACAATAGAATTGTGAAAGCTCGTGGCACAGATCCAACTTAACATAGATATTGTACATTTGTACTATTATGGATAGGTGTTGGGACAAAGCTGGCAGATAATGGATATGCGGTGTTTGGAATAGATTATGAAGGTCATGG--ACGATCAGC-GGGTGCGCGCTGTTACATCAAAAAGTTTGACAACATTGTCAATGACTGCAGCGAGTTTTTCAAGTCAGTTTGTGGTAAGCTACCAAATGCCCTCTTGGTTCACAAGTAGTCTAACCCTCATTGTTATCAGTTAAGTATAGACCACCTGACCTCAGAAGCTGTCACAGTGACGAATAATCCATCTTTGATTTTCCTTTCGCTTGGGATTTTTTTGGAGTAGCTTTATTTAAGTTGAATATTTTTCAGCCTGATAGGTGTGGTTACATCTTACAATTGTTAAAAAGCTTCAGACTTGTTATCCTCTTGCTAAAATGCCCGTTCTCTTGAAAATCAGCGCAGGAGGAGTATAGAGAGAAAAAACGGTTTCTGTATGGGGAGTCGATGGGAGGGGCCGTGGCTCTTTTAACACACAAGAAGGATCCTTCCTTTTGGCATGGTGCTCTTCTGGTTGCACCTATGTGTAAGGTAGGCCTATTGAGATTTTTAGTCTCAACTCATTTACTGTAATATATATGCTTTAGTGCTTGCATTTAGTATTGAGGGACCATTGGAAGTCGGTTATGGTGTTGCTAATGCATTGCAAAATCACCAGATATCTGAGAAGGTGAAGCCACATCCTGTGGTTATAAGCTTACTAACTAAA</genome_strand>
        <mrna_strand>TAATACACAGATCTGTCACTTACCCATGAATGTTTA-TC-CATTTCTGAGTTGGGGTTTGGTTATTTTTTCTGAAAATATACAATGGGTGTTGAATATCATGAG..........................................................................................................................GTATTTATAAGGAATTCAAGAGGTGTACAACTCTTCACTTGTAGATGGTTGCCCTTTTCTTCTCCAAAAGCCCTTGTTTTCCTTTGCCATG..............................................................................GTTATGGCATGGAATGCAGTAGATTCATGAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGGGACAAAGCTGGCAAATAATGGATACGCGGTGTTTGGAATAGATTATGAAGGTCATGGACACGGTCAGCGGGGTGCGCGGTGTTACATCAAAAAGTTTGACAACATTGTCAACGACTGCAGTGAGTTTTTCAAGTCAGTTTGTG....................................................................................................................................................................................................................................................................CGCAGGAGGAGTATAGAGAGAAAACACGGTTTCTGTATGGGGAGTCGATGGGAGGGGCCGTGGCTCTTTTAACACACAAGAAGGATCCTTCCTTTTGGCATGGTGCTCTTCTGGTTGCACCGATGTGTAAG...............................................................................................................................ATATCTGAGAAGGTGAAGCCTCATCCAATGGTTATAAGCTTGCTAACTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E446812" ref_strand="+" ref_description="SGN-E446812 [cSTA-23-G3]">
      <seq>caagaatcactttttctctgtttgttcccttctttctgcaaaaataaaataaaataattgcacccataaggccataatacacagatctgtcacttacccatgaatgttgagtcacatttctgagttggggtttggttattttttctgaaaatatacaatgggtgttgaatatcatgaggtatttataaggaattcaagaggtgtacaactcttcacttgtagatggttgcccttttcttctccaaaagcccttgttttcctttgccatggttatggcatggaatgcagtagattcatgagaggtgttgggacaaagctggcaaataatggatacgcggtgtttggaatagattatgaaggtcatggacggtcagcgggtgcgcggtgttacatcaaaaagtttgacaacattgtcaacgactgcagtgagtttttcaagtcagtttgtgcgcaggaggagtatagagagaaaacacggtttctgtatggggagtcgatgggaggggccgtggctcttttaacacacaagaaggatccttccttttggcatggtgctcttctggttgcaccgatgtgtaagatatctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="103537" stop="99500"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103215" g_stop="103088" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="178" r_length="128" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103087" i_stop="102966" i_length="122">
            <donor d_prob="0.489" d_score="0.98"/>
            <acceptor a_prob="0.818" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102965" g_stop="102875" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="269" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102874" i_stop="102797" i_length="78">
            <donor d_prob="0.823" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102796" g_stop="102764" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="302" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102763" i_stop="100341" i_length="2423">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="100340" g_stop="100194" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="449" r_length="147" r_score="0.959"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="100193" i_stop="99934" i_length="260">
            <donor d_prob="0.935" d_score="0.96"/>
            <acceptor a_prob="0.213" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99933" g_stop="99803" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="580" r_length="131" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E446812" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="0.901" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E446812" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103215" e_stop="103088"/>
          <exon e_start="102965" e_stop="102875"/>
          <exon e_start="102796" e_stop="102764"/>
          <exon e_start="100340" e_stop="100194"/>
          <exon e_start="99933" e_stop="99803"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATAATTGCATCTATAAGGCCATAATACACAGATCTGTTACTTACCCATGAATGTTGAGTCACATTTCTGAGTTGGGATTTGGTTATTTTTTCTGAAAATATACAATGGGTGTTGAATATCATGAGGTGGGTTTTTGTTCTTTTTGCTTTTTTTCTTCAATGAGCATGCATATTTTTCTTCTTTACTTTGTACAATATGGTGTTTTTCTTAATAAAAATTGTGTCTTTACTTACATCAATGGCATTAGGTATTTATAAGGAATTCAAGAGGTGTACAACTCTTCACTTGTAGATGGTTGCCCTTTTCTTCTCCAAAAGCTCTTGTTTTCCTTTGCCATGGTTTGTATTTTTTATTTTTTTTGGTTTTTGTTGAAATTTGATTTAACAAATTGATTAATGATGTCGTTGTTGTTGTAGGTTATGGCATGGAATGCAGTAGATTCATGAGAGGTATAGTAATAAATGTTTCCTCTTTTAATTTGTTTTCACTTTCATGGCCAACTTTTCTGTAGAAATGTTTGTATTCCTTGTGGTTTTAATGTTTGGATGGATAATCGGATTCATATGAATTCAATACTTTTGAAGTACGGTAAACAATGAATATGAATTCGTAGTTAAACTTTGAACACATAAAGTTTAAATCTTGAATCGGATTCTGGTGCCATCAATGCATGTCATGACTTTTTCCTCCTACTTCTTGTGACTTGATATATATGTCATTCAACAGATTGTTTTACTTCTACCATCTTTTTTCTTCCTGTTGAGTTTGTCACAGAGTAACAGTGAAAAAGGAACCCACTTTTTATGCTTTTGGGGTTCATTTCTTTTTCTTTGTTGATCACTCAGTTGAATCCCGATTAAATTTGGATTCGCGCCAGAAGTCCAACAATAGGGATAAAGCGTTTCCTAACAAAGTGTATTCTGTAGCTAGGACACTTGAACCCGAGCTGTGGTTAAGAATGAAGGAGAACTTAGCACTCCACTACAACCCTTGTTGGTCTTGGTGGTCCATTTATGTGGTGAGGTGACCTTAATTTTAGTGTTGTACAATATGGGCCATTTTCCTGCTACACTTGCCTATATTTTTATTTTAGGTGACCAACCATACCAGTAAAATTTATGTCTCTTATCATATCTTTTTAAAAGTCCTTTTTTTTTATATATATTTGTGAACAGTTGGCTGAATACAATAATTTAGAGGAGTTTCAGTTGGTGCCCATATCTTGTCATTTACCTATTTTGTTGAGAACTTCTAATACTTTTTCAGTCTCTATTTTGTTTTATATTCGATAAAGATGATCTTAAATAGAGCGACATGGACAGTGAAGATTCCTATAGCCAACTGGCTTGCTTGAGATTGAAGTGGAGTTTCATGTTAGCTATCTTGGCAGTATGTGCATTATGTTTATCTGGTTGTGGGATATTATTATACAAGAATATCTTTTTTATAGGGCACAATTATTGGTGATATATAATAATGCAATTGTTAGGAGCTAGTAGTTAAAAATGCAACGAAAAATGGTTCTCAAATTGAATGCCAGACTGAAAACTCACCTAACATACTGATCCTCTCATACTGAAGGTACTATAGATTTGCTGAAACAAAGTAATTTTTACCCTTGAATAACATCCTTATATGGTTTACAGCTGCATGATTAGTCTGTTTCTTGTCCTTTTTTGGTTAATTTGCTAATTAACAGCTATGTTGGAACTTCATTGTTTGCCTACTAAAATAAGGAGGATTAATGGTTTGCTGGTAGGTTGGTTGACTATTGAGAAACATAATAAAATTAAAAGTCCTATCTTGGTAGTTTGATAGATTAATTAGGTTAGCAAATTAGTTGGGCCCTATAAGTAACCTCAATTAAAGATTGCTTCACACACCAAAATTTGTGGGACACTTTGAATTCAACTTAACAAGTCAAATCATAAAAGTTTAAAACATAACATAGATTTTAATGGTAGGTAAGTATGATAGGTACATCTGAAATCATTTAAGAGTCATCTAACTTTAAGACTTTGACTATTCAAAAGAAAAAAGTAAACAAGAAAAATGAAATATATTTTAAAATGTTGCTTAAGCCTTGACAAACAAAGTTACCTTGTACCTCTGTTGGTATGAGGTAGTAGGTGCCAGAAGAATAGTCGAGGAGGTGCGTGTGTACTAGCTCGGACACGACTATCATGAAAACAGATATTCTGAAATGTTACTTGACCTGTTCAACTTGGCTTCCAGTGAGAAAAGCTTCTGGTTTTCTTATTCTTGGACCAGGGGATTTTAGCTGCTAGTCTATTTTGGAGTTTTTTGTTCTGACCTGGACCACCTTGAGTATTAGCATTCTTTCTCTAACCTCTACCAAGTTTTTCTGTTGACAAATGATGTGTCATCAAACATTTGCTTTTCCTTCTATTTCTGTTTTTCAAAAAAAGAATAGTAGGTGGGACTTGGAGATGGGAATATTACCTTATACACATAACTGAAATACTGTTGTGACTTTACAGTGTTTGACGTTGCTCAATCCATCTGTCTTGAGTGGTTCAACCAACTGTTGGAGGAATCTTCGGTTGAATTCTCATATGGTCACTCAACTTATAGTTATTATCTCAAAAAGTCATTTATATTCTTGATTTCAATTTTCTTCAACAACGATGGTAACTTTCTGAGATCATAACTAAAAGTTGAGTGACATGAGAAATCAAGTTTGTAATTTTGTCTAGCCCCATATACCTAAGGAGAGTCTCACACAATTGCTACGTATGCGTGCATGAAGCCAATAGATTGATGCTCTTTCTTGTGCACAATAGAATTGTGAAAGCTCGTGGCACAGATCCAACTTAACATAGATATTGTACATTTGTACTATTATGGATAGGTGTTGGGACAAAGCTGGCAGATAATGGATATGCGGTGTTTGGAATAGATTATGAAGGTCATGGACGATCAGCGGGTGCGCGCTGTTACATCAAAAAGTTTGACAACATTGTCAATGACTGCAGCGAGTTTTTCAAGTCAGTTTGTGGTAAGCTACCAAATGCCCTCTTGGTTCACAAGTAGTCTAACCCTCATTGTTATCAGTTAAGTATAGACCACCTGACCTCAGAAGCTGTCACAGTGACGAATAATCCATCTTTGATTTTCCTTTCGCTTGGGATTTTTTTGGAGTAGCTTTATTTAAGTTGAATATTTTTCAGCCTGATAGGTGTGGTTACATCTTACAATTGTTAAAAAGCTTCAGACTTGTTATCCTCTTGCTAAAATGCCCGTTCTCTTGAAAATCAGCGCAGGAGGAGTATAGAGAGAAAAAACGGTTTCTGTATGGGGAGTCGATGGGAGGGGCCGTGGCTCTTTTAACACACAAGAAGGATCCTTCCTTTTGGCATGGTGCTCTTCTGGTTGCACCTATGTGTAAG</genome_strand>
        <mrna_strand>AAAATAATTGCACCCATAAGGCCATAATACACAGATCTGTCACTTACCCATGAATGTTGAGTCACATTTCTGAGTTGGGGTTTGGTTATTTTTTCTGAAAATATACAATGGGTGTTGAATATCATGAG..........................................................................................................................GTATTTATAAGGAATTCAAGAGGTGTACAACTCTTCACTTGTAGATGGTTGCCCTTTTCTTCTCCAAAAGCCCTTGTTTTCCTTTGCCATG..............................................................................GTTATGGCATGGAATGCAGTAGATTCATGAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGGGACAAAGCTGGCAAATAATGGATACGCGGTGTTTGGAATAGATTATGAAGGTCATGGACGGTCAGCGGGTGCGCGGTGTTACATCAAAAAGTTTGACAACATTGTCAACGACTGCAGTGAGTTTTTCAAGTCAGTTTGTG....................................................................................................................................................................................................................................................................CGCAGGAGGAGTATAGAGAGAAAACACGGTTTCTGTATGGGGAGTCGATGGGAGGGGCCGTGGCTCTTTTAACACACAAGAAGGATCCTTCCTTTTGGCATGGTGCTCTTCTGGTTGCACCGATGTGTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E265486" ref_strand="+" ref_description="SGN-E265486 [cLEI-14-A20]">
      <seq>ttataaggaattcaagaggtgtacaactcttcacttgtagatggttgcccttttcttctccaaaagctcttgttttcctttgccatggttatggcatggaatgcagtagattcatgagaggtgttgggacaaagctggcagataatggatatgcggtgtttggaatagattatgaaggtcatggacgatcagcgggtgcgcgctgttacatcaaaaagtttgacaacattgtcaatgactgcagcgagttttcaagtcagtttgtgcgcacgaggagtatatagagaaaaaacggtttctgtatggggagtcgatgggaggggccgtggctcttttaacacacaagaaggatccttccttttggcatggtgctcttctggttgcacctatgtgtaagatatctgaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="103261" stop="99500"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102961" g_stop="102875" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102874" i_stop="102797" i_length="78">
            <donor d_prob="0.823" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102796" g_stop="102764" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="120" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102763" i_stop="100341" i_length="2423">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100340" g_stop="100194" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="266" r_length="146" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="100193" i_stop="99934" i_length="260">
            <donor d_prob="0.935" d_score="0.98"/>
            <acceptor a_prob="0.213" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99933" g_stop="99803" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="397" r_length="131" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E265486" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>398</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265486" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102961" e_stop="102875"/>
          <exon e_start="102796" e_stop="102764"/>
          <exon e_start="100340" e_stop="100194"/>
          <exon e_start="99933" e_stop="99803"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATAAGGAATTCAAGAGGTGTACAACTCTTCACTTGTAGATGGTTGCCCTTTTCTTCTCCAAAAGCTCTTGTTTTCCTTTGCCATGGTTTGTATTTTTTATTTTTTTTGGTTTTTGTTGAAATTTGATTTAACAAATTGATTAATGATGTCGTTGTTGTTGTAGGTTATGGCATGGAATGCAGTAGATTCATGAGAGGTATAGTAATAAATGTTTCCTCTTTTAATTTGTTTTCACTTTCATGGCCAACTTTTCTGTAGAAATGTTTGTATTCCTTGTGGTTTTAATGTTTGGATGGATAATCGGATTCATATGAATTCAATACTTTTGAAGTACGGTAAACAATGAATATGAATTCGTAGTTAAACTTTGAACACATAAAGTTTAAATCTTGAATCGGATTCTGGTGCCATCAATGCATGTCATGACTTTTTCCTCCTACTTCTTGTGACTTGATATATATGTCATTCAACAGATTGTTTTACTTCTACCATCTTTTTTCTTCCTGTTGAGTTTGTCACAGAGTAACAGTGAAAAAGGAACCCACTTTTTATGCTTTTGGGGTTCATTTCTTTTTCTTTGTTGATCACTCAGTTGAATCCCGATTAAATTTGGATTCGCGCCAGAAGTCCAACAATAGGGATAAAGCGTTTCCTAACAAAGTGTATTCTGTAGCTAGGACACTTGAACCCGAGCTGTGGTTAAGAATGAAGGAGAACTTAGCACTCCACTACAACCCTTGTTGGTCTTGGTGGTCCATTTATGTGGTGAGGTGACCTTAATTTTAGTGTTGTACAATATGGGCCATTTTCCTGCTACACTTGCCTATATTTTTATTTTAGGTGACCAACCATACCAGTAAAATTTATGTCTCTTATCATATCTTTTTAAAAGTCCTTTTTTTTTATATATATTTGTGAACAGTTGGCTGAATACAATAATTTAGAGGAGTTTCAGTTGGTGCCCATATCTTGTCATTTACCTATTTTGTTGAGAACTTCTAATACTTTTTCAGTCTCTATTTTGTTTTATATTCGATAAAGATGATCTTAAATAGAGCGACATGGACAGTGAAGATTCCTATAGCCAACTGGCTTGCTTGAGATTGAAGTGGAGTTTCATGTTAGCTATCTTGGCAGTATGTGCATTATGTTTATCTGGTTGTGGGATATTATTATACAAGAATATCTTTTTTATAGGGCACAATTATTGGTGATATATAATAATGCAATTGTTAGGAGCTAGTAGTTAAAAATGCAACGAAAAATGGTTCTCAAATTGAATGCCAGACTGAAAACTCACCTAACATACTGATCCTCTCATACTGAAGGTACTATAGATTTGCTGAAACAAAGTAATTTTTACCCTTGAATAACATCCTTATATGGTTTACAGCTGCATGATTAGTCTGTTTCTTGTCCTTTTTTGGTTAATTTGCTAATTAACAGCTATGTTGGAACTTCATTGTTTGCCTACTAAAATAAGGAGGATTAATGGTTTGCTGGTAGGTTGGTTGACTATTGAGAAACATAATAAAATTAAAAGTCCTATCTTGGTAGTTTGATAGATTAATTAGGTTAGCAAATTAGTTGGGCCCTATAAGTAACCTCAATTAAAGATTGCTTCACACACCAAAATTTGTGGGACACTTTGAATTCAACTTAACAAGTCAAATCATAAAAGTTTAAAACATAACATAGATTTTAATGGTAGGTAAGTATGATAGGTACATCTGAAATCATTTAAGAGTCATCTAACTTTAAGACTTTGACTATTCAAAAGAAAAAAGTAAACAAGAAAAATGAAATATATTTTAAAATGTTGCTTAAGCCTTGACAAACAAAGTTACCTTGTACCTCTGTTGGTATGAGGTAGTAGGTGCCAGAAGAATAGTCGAGGAGGTGCGTGTGTACTAGCTCGGACACGACTATCATGAAAACAGATATTCTGAAATGTTACTTGACCTGTTCAACTTGGCTTCCAGTGAGAAAAGCTTCTGGTTTTCTTATTCTTGGACCAGGGGATTTTAGCTGCTAGTCTATTTTGGAGTTTTTTGTTCTGACCTGGACCACCTTGAGTATTAGCATTCTTTCTCTAACCTCTACCAAGTTTTTCTGTTGACAAATGATGTGTCATCAAACATTTGCTTTTCCTTCTATTTCTGTTTTTCAAAAAAAGAATAGTAGGTGGGACTTGGAGATGGGAATATTACCTTATACACATAACTGAAATACTGTTGTGACTTTACAGTGTTTGACGTTGCTCAATCCATCTGTCTTGAGTGGTTCAACCAACTGTTGGAGGAATCTTCGGTTGAATTCTCATATGGTCACTCAACTTATAGTTATTATCTCAAAAAGTCATTTATATTCTTGATTTCAATTTTCTTCAACAACGATGGTAACTTTCTGAGATCATAACTAAAAGTTGAGTGACATGAGAAATCAAGTTTGTAATTTTGTCTAGCCCCATATACCTAAGGAGAGTCTCACACAATTGCTACGTATGCGTGCATGAAGCCAATAGATTGATGCTCTTTCTTGTGCACAATAGAATTGTGAAAGCTCGTGGCACAGATCCAACTTAACATAGATATTGTACATTTGTACTATTATGGATAGGTGTTGGGACAAAGCTGGCAGATAATGGATATGCGGTGTTTGGAATAGATTATGAAGGTCATGGACGATCAGCGGGTGCGCGCTGTTACATCAAAAAGTTTGACAACATTGTCAATGACTGCAGCGAGTTTTTCAAGTCAGTTTGTGGTAAGCTACCAAATGCCCTCTTGGTTCACAAGTAGTCTAACCCTCATTGTTATCAGTTAAGTATAGACCACCTGACCTCAGAAGCTGTCACAGTGACGAATAATCCATCTTTGATTTTCCTTTCGCTTGGGATTTTTTTGGAGTAGCTTTATTTAAGTTGAATATTTTTCAGCCTGATAGGTGTGGTTACATCTTACAATTGTTAAAAAGCTTCAGACTTGTTATCCTCTTGCTAAAATGCCCGTTCTCTTGAAAATCAGCGCAGGAGGAGTATAGAGAGAAAAAACGGTTTCTGTATGGGGAGTCGATGGGAGGGGCCGTGGCTCTTTTAACACACAAGAAGGATCCTTCCTTTTGGCATGGTGCTCTTCTGGTTGCACCTATGTGTAAG</genome_strand>
        <mrna_strand>TTATAAGGAATTCAAGAGGTGTACAACTCTTCACTTGTAGATGGTTGCCCTTTTCTTCTCCAAAAGCTCTTGTTTTCCTTTGCCATG..............................................................................GTTATGGCATGGAATGCAGTAGATTCATGAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGGGACAAAGCTGGCAGATAATGGATATGCGGTGTTTGGAATAGATTATGAAGGTCATGGACGATCAGCGGGTGCGCGCTGTTACATCAAAAAGTTTGACAACATTGTCAATGACTGCAGCGAG-TTTTCAAGTCAGTTTGTG....................................................................................................................................................................................................................................................................CGCACGAGGAGTATATAGAGAAAAAACGGTTTCTGTATGGGGAGTCGATGGGAGGGGCCGTGGCTCTTTTAACACACAAGAAGGATCCTTCCTTTTGGCATGGTGCTCTTCTGGTTGCACCTATGTGTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E267197" ref_strand="+" ref_description="SGN-E267197 [cLEI-4-G6]">
      <seq>cttactatacttttatcgtatcaataatcactttttctctgtaaaaataattgcatctataaggccataatacacagatctgttacttacccatgaatgttgagtcacatttctgagttgggatttggttattttttctgaaaatatacaatgggtgttgaatatcatgaggtatttataaggaattcaagaggtgtacaactcttcacttgtagatggttgcccttttcttctccaaaagctcttgttttcctttgccatggttatggcatggaatgcagtagattcatgagaggtgttgggacaaagctggcagataatggatatgcggtgtttggaatagattatgaaggtcatggacgatcagcgggtgcgcgctgttacatcaaaaagtttgacaacattgtcaatgactgcagcgagtttttcaagtcagtttgtgcgcaggaggagtatagagagaaaaaacggtttctgtatggggagtcgatgggaggggccgtggctcttttaacacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="103558" stop="99556"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103258" g_stop="103088" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103087" i_stop="102966" i_length="122">
            <donor d_prob="0.489" d_score="1.00"/>
            <acceptor a_prob="0.818" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102965" g_stop="102875" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="262" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102874" i_stop="102797" i_length="78">
            <donor d_prob="0.823" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102796" g_stop="102764" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="295" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102763" i_stop="100341" i_length="2423">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="100340" g_stop="100194" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="442" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="100193" i_stop="99934" i_length="260">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.213" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99933" g_stop="99856" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="520" r_length="78" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E267197" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267197" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103258" e_stop="103088"/>
          <exon e_start="102965" e_stop="102875"/>
          <exon e_start="102796" e_stop="102764"/>
          <exon e_start="100340" e_stop="100194"/>
          <exon e_start="99933" e_stop="99856"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTACTATACTTTTATCGTATCAATAATCACTTTTTCTCTGTAAAAATAATTGCATCTATAAGGCCATAATACACAGATCTGTTACTTACCCATGAATGTTGAGTCACATTTCTGAGTTGGGATTTGGTTATTTTTTCTGAAAATATACAATGGGTGTTGAATATCATGAGGTGGGTTTTTGTTCTTTTTGCTTTTTTTCTTCAATGAGCATGCATATTTTTCTTCTTTACTTTGTACAATATGGTGTTTTTCTTAATAAAAATTGTGTCTTTACTTACATCAATGGCATTAGGTATTTATAAGGAATTCAAGAGGTGTACAACTCTTCACTTGTAGATGGTTGCCCTTTTCTTCTCCAAAAGCTCTTGTTTTCCTTTGCCATGGTTTGTATTTTTTATTTTTTTTGGTTTTTGTTGAAATTTGATTTAACAAATTGATTAATGATGTCGTTGTTGTTGTAGGTTATGGCATGGAATGCAGTAGATTCATGAGAGGTATAGTAATAAATGTTTCCTCTTTTAATTTGTTTTCACTTTCATGGCCAACTTTTCTGTAGAAATGTTTGTATTCCTTGTGGTTTTAATGTTTGGATGGATAATCGGATTCATATGAATTCAATACTTTTGAAGTACGGTAAACAATGAATATGAATTCGTAGTTAAACTTTGAACACATAAAGTTTAAATCTTGAATCGGATTCTGGTGCCATCAATGCATGTCATGACTTTTTCCTCCTACTTCTTGTGACTTGATATATATGTCATTCAACAGATTGTTTTACTTCTACCATCTTTTTTCTTCCTGTTGAGTTTGTCACAGAGTAACAGTGAAAAAGGAACCCACTTTTTATGCTTTTGGGGTTCATTTCTTTTTCTTTGTTGATCACTCAGTTGAATCCCGATTAAATTTGGATTCGCGCCAGAAGTCCAACAATAGGGATAAAGCGTTTCCTAACAAAGTGTATTCTGTAGCTAGGACACTTGAACCCGAGCTGTGGTTAAGAATGAAGGAGAACTTAGCACTCCACTACAACCCTTGTTGGTCTTGGTGGTCCATTTATGTGGTGAGGTGACCTTAATTTTAGTGTTGTACAATATGGGCCATTTTCCTGCTACACTTGCCTATATTTTTATTTTAGGTGACCAACCATACCAGTAAAATTTATGTCTCTTATCATATCTTTTTAAAAGTCCTTTTTTTTTATATATATTTGTGAACAGTTGGCTGAATACAATAATTTAGAGGAGTTTCAGTTGGTGCCCATATCTTGTCATTTACCTATTTTGTTGAGAACTTCTAATACTTTTTCAGTCTCTATTTTGTTTTATATTCGATAAAGATGATCTTAAATAGAGCGACATGGACAGTGAAGATTCCTATAGCCAACTGGCTTGCTTGAGATTGAAGTGGAGTTTCATGTTAGCTATCTTGGCAGTATGTGCATTATGTTTATCTGGTTGTGGGATATTATTATACAAGAATATCTTTTTTATAGGGCACAATTATTGGTGATATATAATAATGCAATTGTTAGGAGCTAGTAGTTAAAAATGCAACGAAAAATGGTTCTCAAATTGAATGCCAGACTGAAAACTCACCTAACATACTGATCCTCTCATACTGAAGGTACTATAGATTTGCTGAAACAAAGTAATTTTTACCCTTGAATAACATCCTTATATGGTTTACAGCTGCATGATTAGTCTGTTTCTTGTCCTTTTTTGGTTAATTTGCTAATTAACAGCTATGTTGGAACTTCATTGTTTGCCTACTAAAATAAGGAGGATTAATGGTTTGCTGGTAGGTTGGTTGACTATTGAGAAACATAATAAAATTAAAAGTCCTATCTTGGTAGTTTGATAGATTAATTAGGTTAGCAAATTAGTTGGGCCCTATAAGTAACCTCAATTAAAGATTGCTTCACACACCAAAATTTGTGGGACACTTTGAATTCAACTTAACAAGTCAAATCATAAAAGTTTAAAACATAACATAGATTTTAATGGTAGGTAAGTATGATAGGTACATCTGAAATCATTTAAGAGTCATCTAACTTTAAGACTTTGACTATTCAAAAGAAAAAAGTAAACAAGAAAAATGAAATATATTTTAAAATGTTGCTTAAGCCTTGACAAACAAAGTTACCTTGTACCTCTGTTGGTATGAGGTAGTAGGTGCCAGAAGAATAGTCGAGGAGGTGCGTGTGTACTAGCTCGGACACGACTATCATGAAAACAGATATTCTGAAATGTTACTTGACCTGTTCAACTTGGCTTCCAGTGAGAAAAGCTTCTGGTTTTCTTATTCTTGGACCAGGGGATTTTAGCTGCTAGTCTATTTTGGAGTTTTTTGTTCTGACCTGGACCACCTTGAGTATTAGCATTCTTTCTCTAACCTCTACCAAGTTTTTCTGTTGACAAATGATGTGTCATCAAACATTTGCTTTTCCTTCTATTTCTGTTTTTCAAAAAAAGAATAGTAGGTGGGACTTGGAGATGGGAATATTACCTTATACACATAACTGAAATACTGTTGTGACTTTACAGTGTTTGACGTTGCTCAATCCATCTGTCTTGAGTGGTTCAACCAACTGTTGGAGGAATCTTCGGTTGAATTCTCATATGGTCACTCAACTTATAGTTATTATCTCAAAAAGTCATTTATATTCTTGATTTCAATTTTCTTCAACAACGATGGTAACTTTCTGAGATCATAACTAAAAGTTGAGTGACATGAGAAATCAAGTTTGTAATTTTGTCTAGCCCCATATACCTAAGGAGAGTCTCACACAATTGCTACGTATGCGTGCATGAAGCCAATAGATTGATGCTCTTTCTTGTGCACAATAGAATTGTGAAAGCTCGTGGCACAGATCCAACTTAACATAGATATTGTACATTTGTACTATTATGGATAGGTGTTGGGACAAAGCTGGCAGATAATGGATATGCGGTGTTTGGAATAGATTATGAAGGTCATGGACGATCAGCGGGTGCGCGCTGTTACATCAAAAAGTTTGACAACATTGTCAATGACTGCAGCGAGTTTTTCAAGTCAGTTTGTGGTAAGCTACCAAATGCCCTCTTGGTTCACAAGTAGTCTAACCCTCATTGTTATCAGTTAAGTATAGACCACCTGACCTCAGAAGCTGTCACAGTGACGAATAATCCATCTTTGATTTTCCTTTCGCTTGGGATTTTTTTGGAGTAGCTTTATTTAAGTTGAATATTTTTCAGCCTGATAGGTGTGGTTACATCTTACAATTGTTAAAAAGCTTCAGACTTGTTATCCTCTTGCTAAAATGCCCGTTCTCTTGAAAATCAGCGCAGGAGGAGTATAGAGAGAAAAAACGGTTTCTGTATGGGGAGTCGATGGGAGGGGCCGTGGCTCTTTTAACACACA</genome_strand>
        <mrna_strand>CTTACTATACTTTTATCGTATCAATAATCACTTTTTCTCTGTAAAAATAATTGCATCTATAAGGCCATAATACACAGATCTGTTACTTACCCATGAATGTTGAGTCACATTTCTGAGTTGGGATTTGGTTATTTTTTCTGAAAATATACAATGGGTGTTGAATATCATGAG..........................................................................................................................GTATTTATAAGGAATTCAAGAGGTGTACAACTCTTCACTTGTAGATGGTTGCCCTTTTCTTCTCCAAAAGCTCTTGTTTTCCTTTGCCATG..............................................................................GTTATGGCATGGAATGCAGTAGATTCATGAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGGGACAAAGCTGGCAGATAATGGATATGCGGTGTTTGGAATAGATTATGAAGGTCATGGACGATCAGCGGGTGCGCGCTGTTACATCAAAAAGTTTGACAACATTGTCAATGACTGCAGCGAGTTTTTCAAGTCAGTTTGTG....................................................................................................................................................................................................................................................................CGCAGGAGGAGTATAGAGAGAAAAAACGGTTTCTGTATGGGGAGTCGATGGGAGGGGCCGTGGCTCTTTTAACACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E200441" ref_strand="+" ref_description="SGN-E200441 [cLEB-8-D7]">
      <seq>gcacgagtctccctgttttccaagaattcaatatcttactatacttttatcgtatcaataatcactttttctctgtaaaaataattgcatctataaggccataatacacagatctgttacttacccatgaatgttgagtcacatttctgagttgggatttggttattttttctgaaaatatacaatgggtgttgaatatcatgaggtatttataaggaattcaagaggtgtacaactcttcacttgtagatggttgcccttttcttctccaaaagctcttgttttcctttgccatggttatggcatggaatgcagtacattcatgagagggtgttgggacaaagctggcagataatggatatgcggcgtttggaatagattatgaaggtcatggacgatcagcgggtgcgcgctgttacatcaaaaagtttgacaacattgtcaatgactgcagcgagtttttcaagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="103585" stop="99902"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103292" g_stop="103088" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103087" i_stop="102966" i_length="122">
            <donor d_prob="0.489" d_score="1.00"/>
            <acceptor a_prob="0.818" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102965" g_stop="102875" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="296" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102874" i_stop="102797" i_length="78">
            <donor d_prob="0.823" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102796" g_stop="102764" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="330" r_length="34" r_score="0.909"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102763" i_stop="100341" i_length="2423">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="100340" g_stop="100202" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="469" r_length="139" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E200441" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200441" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103292" e_stop="103088"/>
          <exon e_start="102965" e_stop="102875"/>
          <exon e_start="102796" e_stop="102764"/>
          <exon e_start="100340" e_stop="100202"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATCCCTCTCCCTGTTTTCCAAGAATTCAATATCTTACTATACTTTTATCGTATCAATAATCACTTTTTCTCTGTAAAAATAATTGCATCTATAAGGCCATAATACACAGATCTGTTACTTACCCATGAATGTTGAGTCACATTTCTGAGTTGGGATTTGGTTATTTTTTCTGAAAATATACAATGGGTGTTGAATATCATGAGGTGGGTTTTTGTTCTTTTTGCTTTTTTTCTTCAATGAGCATGCATATTTTTCTTCTTTACTTTGTACAATATGGTGTTTTTCTTAATAAAAATTGTGTCTTTACTTACATCAATGGCATTAGGTATTTATAAGGAATTCAAGAGGTGTACAACTCTTCACTTGTAGATGGTTGCCCTTTTCTTCTCCAAAAGCTCTTGTTTTCCTTTGCCATGGTTTGTATTTTTTATTTTTTTTGGTTTTTGTTGAAATTTGATTTAACAAATTGATTAATGATGTCGTTGTTGTTGTAGGTTATGGCATGGAATGCAGTAGATTCATGAGA-GGTATAGTAATAAATGTTTCCTCTTTTAATTTGTTTTCACTTTCATGGCCAACTTTTCTGTAGAAATGTTTGTATTCCTTGTGGTTTTAATGTTTGGATGGATAATCGGATTCATATGAATTCAATACTTTTGAAGTACGGTAAACAATGAATATGAATTCGTAGTTAAACTTTGAACACATAAAGTTTAAATCTTGAATCGGATTCTGGTGCCATCAATGCATGTCATGACTTTTTCCTCCTACTTCTTGTGACTTGATATATATGTCATTCAACAGATTGTTTTACTTCTACCATCTTTTTTCTTCCTGTTGAGTTTGTCACAGAGTAACAGTGAAAAAGGAACCCACTTTTTATGCTTTTGGGGTTCATTTCTTTTTCTTTGTTGATCACTCAGTTGAATCCCGATTAAATTTGGATTCGCGCCAGAAGTCCAACAATAGGGATAAAGCGTTTCCTAACAAAGTGTATTCTGTAGCTAGGACACTTGAACCCGAGCTGTGGTTAAGAATGAAGGAGAACTTAGCACTCCACTACAACCCTTGTTGGTCTTGGTGGTCCATTTATGTGGTGAGGTGACCTTAATTTTAGTGTTGTACAATATGGGCCATTTTCCTGCTACACTTGCCTATATTTTTATTTTAGGTGACCAACCATACCAGTAAAATTTATGTCTCTTATCATATCTTTTTAAAAGTCCTTTTTTTTTATATATATTTGTGAACAGTTGGCTGAATACAATAATTTAGAGGAGTTTCAGTTGGTGCCCATATCTTGTCATTTACCTATTTTGTTGAGAACTTCTAATACTTTTTCAGTCTCTATTTTGTTTTATATTCGATAAAGATGATCTTAAATAGAGCGACATGGACAGTGAAGATTCCTATAGCCAACTGGCTTGCTTGAGATTGAAGTGGAGTTTCATGTTAGCTATCTTGGCAGTATGTGCATTATGTTTATCTGGTTGTGGGATATTATTATACAAGAATATCTTTTTTATAGGGCACAATTATTGGTGATATATAATAATGCAATTGTTAGGAGCTAGTAGTTAAAAATGCAACGAAAAATGGTTCTCAAATTGAATGCCAGACTGAAAACTCACCTAACATACTGATCCTCTCATACTGAAGGTACTATAGATTTGCTGAAACAAAGTAATTTTTACCCTTGAATAACATCCTTATATGGTTTACAGCTGCATGATTAGTCTGTTTCTTGTCCTTTTTTGGTTAATTTGCTAATTAACAGCTATGTTGGAACTTCATTGTTTGCCTACTAAAATAAGGAGGATTAATGGTTTGCTGGTAGGTTGGTTGACTATTGAGAAACATAATAAAATTAAAAGTCCTATCTTGGTAGTTTGATAGATTAATTAGGTTAGCAAATTAGTTGGGCCCTATAAGTAACCTCAATTAAAGATTGCTTCACACACCAAAATTTGTGGGACACTTTGAATTCAACTTAACAAGTCAAATCATAAAAGTTTAAAACATAACATAGATTTTAATGGTAGGTAAGTATGATAGGTACATCTGAAATCATTTAAGAGTCATCTAACTTTAAGACTTTGACTATTCAAAAGAAAAAAGTAAACAAGAAAAATGAAATATATTTTAAAATGTTGCTTAAGCCTTGACAAACAAAGTTACCTTGTACCTCTGTTGGTATGAGGTAGTAGGTGCCAGAAGAATAGTCGAGGAGGTGCGTGTGTACTAGCTCGGACACGACTATCATGAAAACAGATATTCTGAAATGTTACTTGACCTGTTCAACTTGGCTTCCAGTGAGAAAAGCTTCTGGTTTTCTTATTCTTGGACCAGGGGATTTTAGCTGCTAGTCTATTTTGGAGTTTTTTGTTCTGACCTGGACCACCTTGAGTATTAGCATTCTTTCTCTAACCTCTACCAAGTTTTTCTGTTGACAAATGATGTGTCATCAAACATTTGCTTTTCCTTCTATTTCTGTTTTTCAAAAAAAGAATAGTAGGTGGGACTTGGAGATGGGAATATTACCTTATACACATAACTGAAATACTGTTGTGACTTTACAGTGTTTGACGTTGCTCAATCCATCTGTCTTGAGTGGTTCAACCAACTGTTGGAGGAATCTTCGGTTGAATTCTCATATGGTCACTCAACTTATAGTTATTATCTCAAAAAGTCATTTATATTCTTGATTTCAATTTTCTTCAACAACGATGGTAACTTTCTGAGATCATAACTAAAAGTTGAGTGACATGAGAAATCAAGTTTGTAATTTTGTCTAGCCCCATATACCTAAGGAGAGTCTCACACAATTGCTACGTATGCGTGCATGAAGCCAATAGATTGATGCTCTTTCTTGTGCACAATAGAATTGTGAAAGCTCGTGGCACAGATCCAACTTAACATAGATATTGTACATTTGTACTATTATGGATAGGTGTTGGGACAAAGCTGGCAGATAATGGATATGCGGTGTTTGGAATAGATTATGAAGGTCATGGACGATCAGCGGGTGCGCGCTGTTACATCAAAAAGTTTGACAACATTGTCAATGACTGCAGCGAGTTTTTCAAGTC</genome_strand>
        <mrna_strand>GCACGAGTCTCCCTGTTTTCCAAGAATTCAATATCTTACTATACTTTTATCGTATCAATAATCACTTTTTCTCTGTAAAAATAATTGCATCTATAAGGCCATAATACACAGATCTGTTACTTACCCATGAATGTTGAGTCACATTTCTGAGTTGGGATTTGGTTATTTTTTCTGAAAATATACAATGGGTGTTGAATATCATGAG..........................................................................................................................GTATTTATAAGGAATTCAAGAGGTGTACAACTCTTCACTTGTAGATGGTTGCCCTTTTCTTCTCCAAAAGCTCTTGTTTTCCTTTGCCATG..............................................................................GTTATGGCATGGAATGCAGTACATTCATGAGAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGGGACAAAGCTGGCAGATAATGGATATGCGGCGTTTGGAATAGATTATGAAGGTCATGGACGATCAGCGGGTGCGCGCTGTTACATCAAAAAGTTTGACAACATTGTCAATGACTGCAGCGAGTTTTTCAAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E265769" ref_strand="+" ref_description="SGN-E265769 [cLEI-11-B2]">
      <seq>ccaactggcttgcttgagattgaagtggagtttcatgttagctatcttggcagtatgtgcattatgtttatctggttgtgggatattattatacaagaatatcttttttatagggcacaattattggtgatatataataatgcaattgttaggagctagtagttaaaaatgcaacgaaaaatggttctcaaattgaatgccagactgaaaactcacctaacatactgatcctctcatactgaaggtactatagatttgctgaaacaaagtaatttttacccttgaataacatccttatatggtttacagctgcatgattagtctgtttcttgtccttttttggttaatttgctaattaacagctatgttggaacttcattgtttgcctactaaaataacgaggattaatggtttgctggtaggttggttgactattgagaaacataataaaattaaaagtcctatcttggtagtttgatagattaattaagttagcaaattagttgggccctataagtaacctcaattaaagattgcttcacacaccaaaatttgtgggacacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="102175" stop="101010"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101875" g_stop="101310" g_length="566"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="566" r_length="566" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E265769" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265769" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101875" e_stop="101310"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAACTGGCTTGCTTGAGATTGAAGTGGAGTTTCATGTTAGCTATCTTGGCAGTATGTGCATTATGTTTATCTGGTTGTGGGATATTATTATACAAGAATATCTTTTTTATAGGGCACAATTATTGGTGATATATAATAATGCAATTGTTAGGAGCTAGTAGTTAAAAATGCAACGAAAAATGGTTCTCAAATTGAATGCCAGACTGAAAACTCACCTAACATACTGATCCTCTCATACTGAAGGTACTATAGATTTGCTGAAACAAAGTAATTTTTACCCTTGAATAACATCCTTATATGGTTTACAGCTGCATGATTAGTCTGTTTCTTGTCCTTTTTTGGTTAATTTGCTAATTAACAGCTATGTTGGAACTTCATTGTTTGCCTACTAAAATAAGGAGGATTAATGGTTTGCTGGTAGGTTGGTTGACTATTGAGAAACATAATAAAATTAAAAGTCCTATCTTGGTAGTTTGATAGATTAATTAGGTTAGCAAATTAGTTGGGCCCTATAAGTAACCTCAATTAAAGATTGCTTCACACACCAAAATTTGTGGGACACTTT</genome_strand>
        <mrna_strand>CCAACTGGCTTGCTTGAGATTGAAGTGGAGTTTCATGTTAGCTATCTTGGCAGTATGTGCATTATGTTTATCTGGTTGTGGGATATTATTATACAAGAATATCTTTTTTATAGGGCACAATTATTGGTGATATATAATAATGCAATTGTTAGGAGCTAGTAGTTAAAAATGCAACGAAAAATGGTTCTCAAATTGAATGCCAGACTGAAAACTCACCTAACATACTGATCCTCTCATACTGAAGGTACTATAGATTTGCTGAAACAAAGTAATTTTTACCCTTGAATAACATCCTTATATGGTTTACAGCTGCATGATTAGTCTGTTTCTTGTCCTTTTTTGGTTAATTTGCTAATTAACAGCTATGTTGGAACTTCATTGTTTGCCTACTAAAATAACGAGGATTAATGGTTTGCTGGTAGGTTGGTTGACTATTGAGAAACATAATAAAATTAAAAGTCCTATCTTGGTAGTTTGATAGATTAATTAAGTTAGCAAATTAGTTGGGCCCTATAAGTAACCTCAATTAAAGATTGCTTCACACACCAAAATTTGTGGGACACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E537921" ref_strand="+" ref_description="SGN-E537921 [TUS-56-M9]">
      <seq>gccaactggcttgcttgagattgaagtggagtttcatgttagctatcttggcagtatgtgcattatgtttatctggttgtgggatattattatacaagaatatcttttttatagggcacaattattggtgatatataataatgcaattgttaggagctagtagttaaaaatgcaacgaaaaatggttctcaaattgaatgccagactgaaaactcacctaacatactgatcctctcatactgaaggtactatagatttgctgaaacaaagtaatttttacccttgaataacatccttatatggtttacagctgcatgattagtctgtttcttgtccttttttggttaatttgctaattaacagctatgttggaacttcattgtttgcctactaaaataaggaggattaatggtttgctggtaggttggttgactattgagaaacataatanaattaaaagtcctatcttggtagtttgatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="102176" stop="101095"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101876" g_stop="101395" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="482" r_length="482" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E537921" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E537921" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101876" e_stop="101395"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCAACTGGCTTGCTTGAGATTGAAGTGGAGTTTCATGTTAGCTATCTTGGCAGTATGTGCATTATGTTTATCTGGTTGTGGGATATTATTATACAAGAATATCTTTTTTATAGGGCACAATTATTGGTGATATATAATAATGCAATTGTTAGGAGCTAGTAGTTAAAAATGCAACGAAAAATGGTTCTCAAATTGAATGCCAGACTGAAAACTCACCTAACATACTGATCCTCTCATACTGAAGGTACTATAGATTTGCTGAAACAAAGTAATTTTTACCCTTGAATAACATCCTTATATGGTTTACAGCTGCATGATTAGTCTGTTTCTTGTCCTTTTTTGGTTAATTTGCTAATTAACAGCTATGTTGGAACTTCATTGTTTGCCTACTAAAATAAGGAGGATTAATGGTTTGCTGGTAGGTTGGTTGACTATTGAGAAACATAATAAAATTAAAAGTCCTATCTTGGTAGTTTGATAG</genome_strand>
        <mrna_strand>GCCAACTGGCTTGCTTGAGATTGAAGTGGAGTTTCATGTTAGCTATCTTGGCAGTATGTGCATTATGTTTATCTGGTTGTGGGATATTATTATACAAGAATATCTTTTTTATAGGGCACAATTATTGGTGATATATAATAATGCAATTGTTAGGAGCTAGTAGTTAAAAATGCAACGAAAAATGGTTCTCAAATTGAATGCCAGACTGAAAACTCACCTAACATACTGATCCTCTCATACTGAAGGTACTATAGATTTGCTGAAACAAAGTAATTTTTACCCTTGAATAACATCCTTATATGGTTTACAGCTGCATGATTAGTCTGTTTCTTGTCCTTTTTTGGTTAATTTGCTAATTAACAGCTATGTTGGAACTTCATTGTTTGCCTACTAAAATAAGGAGGATTAATGGTTTGCTGGTAGGTTGGTTGACTATTGAGAAACATAATANAATTAAAAGTCCTATCTTGGTAGTTTGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E243373" ref_strand="+" ref_description="SGN-E243373 [cLEF-16-J10]">
      <seq>tttcaactacaaatctatttgagtattgagttatttttacttcattctgaattagagatttcgaatttgagtcttttgaatataaagagtttttggatccaaatctttttgaaaataaaatatttcgagtttaaatctttgtgcgtatacagtaatttttactttattctaaattagaaattttaaatttaaattttttagtacaaaaaaaaattaaattgcaaattttaatttaatcaaacttcaatataaatataaggttaaaaatccccgaatacacttctcctcatcatatcttatatatttatctatttatatctttctgtatatattccaacttctcaggtccactttatccctctccctgttttccaagaattcaatatcttactatacttttatcgtatcaataatcactttttctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="103944" stop="102919"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103644" g_stop="103219" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="426" r_length="426" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E243373" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243373" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103644" e_stop="103219"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAACTACAAATCTATTTGAGTATTGAGTTATTTTTACTTCATTCTGAATTAGAGATTTCGAATTTGAGTCTTTTGAATATAAAGAGTTTTTGGATCCAAATCTTTTTGAAAATAAAATATTTCGAGTTTAAATCTTTGTGCGTATACAGTAATTTTTACTTTATTCTAAATTAGAAATTTTAAATTTAAATTTTTTAGTACAAAAAAAAATTAAATTGCAAATTTTAATTTAATCAAACTTCAATATAAATATAAGGTTAAAAATCCCCGAATACACTTCTCCTCATCATATCTTATATATTTATCTATTTATATCTTTCTGTATATATTCCAACTTCTCAGGTCCACTTTATCCCTCTCCCTGTTTTCCAAGAATTCAATATCTTACTATACTTTTATCGTATCAATAATCACTTTTTCTCT</genome_strand>
        <mrna_strand>TTTCAACTACAAATCTATTTGAGTATTGAGTTATTTTTACTTCATTCTGAATTAGAGATTTCGAATTTGAGTCTTTTGAATATAAAGAGTTTTTGGATCCAAATCTTTTTGAAAATAAAATATTTCGAGTTTAAATCTTTGTGCGTATACAGTAATTTTTACTTTATTCTAAATTAGAAATTTTAAATTTAAATTTTTTAGTACAAAAAAAAATTAAATTGCAAATTTTAATTTAATCAAACTTCAATATAAATATAAGGTTAAAAATCCCCGAATACACTTCTCCTCATCATATCTTATATATTTATCTATTTATATCTTTCTGTATATATTCCAACTTCTCAGGTCCACTTTATCCCTCTCCCTGTTTTCCAAGAATTCAATATCTTACTATACTTTTATCGTATCAATAATCACTTTTTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E724659" ref_strand="+" ref_description="SGN-E724659 [FC24DB09]">
      <seq>agggcgattggcggccaatcggccgaattgagggtcggggcgacgggtcaaataggaagaggaacgaggaaaaccctaattaaatataatcatccacttccatacactcgcagtcggccgccgtcgaatttctccctatttgaatagcagcagaagagaaatcaagagcgtaaagatgagccgagcagcagcagcagtgaagggcgggaagaagaagggggcaagcttcgtcatcgactgttcgaagccagtggaggacagtattatggagattgcttctcttgacaagttccttcaagagagaattaaggttggtggaaaagctggtgcacttggagattccgttactgtcactcgtgataagaataaaatcaccgtcacttgcaactccactttttccaagaggtacctcaaataccttgtcaaaaagtacttgaagaaaaacaacgttagggattggcttagggtgattgcttccaacaaggacaggaatgtttatgagttgcgctacttcaacattgccgagaatgaagcagatgaagaagattaaacatttctagtcaatgtcccttttatcttcttattttgaaccttatatcatctgtttgagttattaatgagccgtatcttctcatttccagattattgattttttgtccccttatcagtaaaagaaaacgttactttgatacactttggtttgttcatctctggggtcaagtttttgcaaggcatcaatttctctgtattgccttttccctcttgatgatcacatgtaatttattgagtttatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="+" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="107671" stop="111151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107976" g_stop="108079" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="136" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108080" i_stop="108159" i_length="80">
            <donor d_prob="0.876" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108160" g_stop="108428" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="405" r_length="269" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108429" i_stop="110461" i_length="2033">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110462" g_stop="110851" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="795" r_length="390" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="+" ref_id="SGN-E724659" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>763</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E724659" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107976" e_stop="108079"/>
          <exon e_start="108160" e_stop="108428"/>
          <exon e_start="110462" e_stop="110851"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCGGGGCGACGGGTCAAATAGGAAGAGGAACGAGGAAAACCCTAATTAAATATAATCATCCACTTCCATACACTCGCAGTCGGCCGCCGTCGAATTTCTCCCGTATGTATTTTCCAACTTTTTCTCCGGCGATGAACATGAGCTTTGTGTTTGAGATCTGACGATTTTTGTTTTGTTTTCAGTATTTGAATAGCAGCAGAAGAGAAATCAAGAGCGTAAAGATGAGCCGAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATCGACTGTTCGAAGCCAGTGGAGGACAGTATTATGGAGATTGCTTCTCTTGACAAGTTCCTCCAAGAGAGAATTAAGGTTGGTGGAAAAGCTGGTGCACTTGGAGATTCCGTTACTGTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAGGTACTGACTAGTACTATATTTCCACTCCTCATTTCGTGTAATTTGGGTTTTTGCCTGATTTTTAATTGGGTTTATTTGAAAAAATTGATCGTTGAAACTTCGTGTGGGTCGACTTTCATTGTAGTTTGATAATGTTTACACTGACAGATTGATAGGATTTTAGCGTAAACCTATTCTTTTATTCGGGATGTGCTATGCTCTGCAAGGAGTTGTTTTGTTTGGAATAGTGTAGTCATTCACGCATTGAGCTTTGAGTCAGTTGATAATGGGTTAAAATAGAGTTCTTTTTGCAGTTTATTTTAGTTATCAATAGTGATGATGATTGTGTGTTTGTGTTATGTCATTCTACTGCTTGTTTATTCAAAATATTATCCTATTTACATTGAGAAATAAGGAGAAATAGAAGAACTAAAACAGCAGCGTAATATCTTGTAGGTAACCATTTGTATCTTGAACTAGGTATCCTAATTATCCTTGTAGCTCTTGCTGAACTTATGGAACAGATAGTCTATGAGCTCTACACTTCAACGTCCAAGATTAGAAATCGGGGTTGGCTTTTATCGTACTTGGATTATTTTCACAACTGACAGATTGAAATTAACTTATCATAGCCTCTTTTATTGTGGCTTGTTTCTGCTTTACCAAGAGCTCTTATTTGGAATAGTGCATTCATTTATATTTTAAGCTCAGAGTAGATTAACAGTGGTTTTCAAAAGAGGTCCTTTTTGCTGTTTATTTTAGTTTGAGTGCCCTGCACTGCAAGTCTAATAAATAAGCCCTTCTATTCTGGAGTTATTACATTGAAGAGGATGAGCTTATGTCATTCTACTTTTCGTTCATCTAATGCATTATCTTACTTACATTGAGAAGCAAAGAAATAACAGAAAAATTATGGTGGCGTAGTATCTTGTAGTTATTCGTAAATCCAACTGTTTATCTTGTAATTATCCGTAAATCCAACTGTTGGTCTTCTCATATAGCAGGTTCAACCAGGCCCCAGTAACCACTGTTACATTTTTGGACTGTTGTCTGCTCTTTAGTTATTTAGTAAATTTTTATAAATTAGCAGACCCCTTCTTTTGCTTGCATCTTCTTGATGCCTTCTAATGAAATCTCTTTCATCTAAAAAAGATATTCATAACTTGAATAGGGTATGTGCATAATGTTATATAATTATAATAATCCTCACAGATCTTCCTGAATTTATGTTCAGATTGTCAGTGAGCATTAGCTAGATTGTTTGGCTCCTCCCACTTCTCAGTGAAGTAGATTCTTAAGTAGGCGGTTGTTGATGAGACCAATTAGACTGCAACCTAGCCTTTCACTTGTGTCCATTAGTTTGCGTCAAGTGCAATTTTGTTGATTTCATCTTTTACATCCATAATCACACAGAATAGTACACTTGGATTATGTCAAATTACATGTGAAATAGGCTTGGAAGAACTAATATGTATTAAGTTTGTAACTTGAAAGAGATAGGTAACTAACATGTAAGCAGGCTTAGTTATAGGTAATTGATAATATTGATCATTATAGATGCTCTTGCTAACTGAAACATCCTTCAGGGCGTGTAAAGCATATTTTCATGTATTTTTTGTTGGGTTCTGAAGAAAGTCTTCATTTTTTATGTAAGTTTGATGCAGCTGAGTAGAATCTATAGTGGTATTCTTGTTTCATCTGATGTATGTTTCTAAGCTTGTTCTGGAAGTGACATCAACCACTTATTAGCATCACCATTTACCTAGCACATTTTTGGTTCAAGTGATAGTCCAAAGGCTACTTGTAAAAGAAACTGATACTCTAAAGAGAACCAAATGTCCAACATATTTATCATATTACTTTTTTTTTTTTGCAATTTCTGTATGCGCGATTAATGAAAAAAGCTATTGTGATGTTGCATTACTACTGCTATATATTTTATTAATCCTCTTCCCCCACTAAAACCAAAAGAAAGACTGTTAGAAGTAGTGAATTCAGGCAATTCAAGACTAGTAAACAATGCTCTACTTACAATTTTTTCTTCTACTTTTCAGGTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATTATTGATTTTTTGTCCCCTTATCAGTAAAAGAAAACGTTACTTTGATACACTTTGGTTTGTTCATCTCTGGGGTCAAGTTTTTGCAAGGCATCAATTTCTCTGTATTGCCTTTTCCCTCTTGATGATCACATGTAATTTATAGAGTTTATCT</genome_strand>
        <mrna_strand>GGTCGGGGCGACGGGTCAAATAGGAAGAGGAACGAGGAAAACCCTAATTAAATATAATCATCCACTTCCATACACTCGCAGTCGGCCGCCGTCGAATTTCTCCC................................................................................TATTTGAATAGCAGCAGAAGAGAAATCAAGAGCGTAAAGATGAGCCGAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATCGACTGTTCGAAGCCAGTGGAGGACAGTATTATGGAGATTGCTTCTCTTGACAAGTTCCTTCAAGAGAGAATTAAGGTTGGTGGAAAAGCTGGTGCACTTGGAGATTCCGTTACTGTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATTTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATTATTGATTTTTTGTCCCCTTATCAGTAAAAGAAAACGTTACTTTGATACACTTTGGTTTGTTCATCTCTGGGGTCAAGTTTTTGCAAGGCATCAATTTCTCTGTATTGCCTTTTCCCTCTTGATGATCACATGTAATTTATTGAGTTTATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E723002" ref_strand="+" ref_description="SGN-E723002 [FC19AA12]">
      <seq>aatcggccgaattgggccgccgtcgaatttctccctatttgaatagcagcagaagagaaatcaagagcgtaaagatgagccgagcagcagcagcagtgaagggcgggaagaagaagggggcaagcttcgtcatcgactgttcgaagccagtggaggacagtattatggagattgcttctcttgacaagttccttcaagagagaattaaggttggtggaaaagctggtgcacttggagattccgttactgtcactcgtgataagaataaaatcaccgtcacttgcaactccactttttccaagaggtacctcaaataccttgtcaaaaagtacttgaagaaaaacaacgttagggattggcttagggtgattgcttccaacaaggacaggaatgtttatgagttgcgctacttcaacattgccgagaatgaagcagatgaagaagattaaacatttctagtcaatgtcccttttatcttcttattttgaaccttatatcatctgtttgagttattaatgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="+" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="107752" stop="110976"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108045" g_stop="108079" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="0.771"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108080" i_stop="108159" i_length="80">
            <donor d_prob="0.876" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108160" g_stop="108428" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="304" r_length="269" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108429" i_stop="110461" i_length="2033">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110462" g_stop="110676" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="519" r_length="215" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="526" polyA_stop="576"/>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="+" ref_id="SGN-E723002" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="0.901" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E723002" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108045" e_stop="108079"/>
          <exon e_start="108160" e_stop="108428"/>
          <exon e_start="110462" e_stop="110676"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACACTCGCAGTCGGCCGCCGTCGAATTTCTCCCGTATGTATTTTCCAACTTTTTCTCCGGCGATGAACATGAGCTTTGTGTTTGAGATCTGACGATTTTTGTTTTGTTTTCAGTATTTGAATAGCAGCAGAAGAGAAATCAAGAGCGTAAAGATGAGCCGAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATCGACTGTTCGAAGCCAGTGGAGGACAGTATTATGGAGATTGCTTCTCTTGACAAGTTCCTCCAAGAGAGAATTAAGGTTGGTGGAAAAGCTGGTGCACTTGGAGATTCCGTTACTGTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAGGTACTGACTAGTACTATATTTCCACTCCTCATTTCGTGTAATTTGGGTTTTTGCCTGATTTTTAATTGGGTTTATTTGAAAAAATTGATCGTTGAAACTTCGTGTGGGTCGACTTTCATTGTAGTTTGATAATGTTTACACTGACAGATTGATAGGATTTTAGCGTAAACCTATTCTTTTATTCGGGATGTGCTATGCTCTGCAAGGAGTTGTTTTGTTTGGAATAGTGTAGTCATTCACGCATTGAGCTTTGAGTCAGTTGATAATGGGTTAAAATAGAGTTCTTTTTGCAGTTTATTTTAGTTATCAATAGTGATGATGATTGTGTGTTTGTGTTATGTCATTCTACTGCTTGTTTATTCAAAATATTATCCTATTTACATTGAGAAATAAGGAGAAATAGAAGAACTAAAACAGCAGCGTAATATCTTGTAGGTAACCATTTGTATCTTGAACTAGGTATCCTAATTATCCTTGTAGCTCTTGCTGAACTTATGGAACAGATAGTCTATGAGCTCTACACTTCAACGTCCAAGATTAGAAATCGGGGTTGGCTTTTATCGTACTTGGATTATTTTCACAACTGACAGATTGAAATTAACTTATCATAGCCTCTTTTATTGTGGCTTGTTTCTGCTTTACCAAGAGCTCTTATTTGGAATAGTGCATTCATTTATATTTTAAGCTCAGAGTAGATTAACAGTGGTTTTCAAAAGAGGTCCTTTTTGCTGTTTATTTTAGTTTGAGTGCCCTGCACTGCAAGTCTAATAAATAAGCCCTTCTATTCTGGAGTTATTACATTGAAGAGGATGAGCTTATGTCATTCTACTTTTCGTTCATCTAATGCATTATCTTACTTACATTGAGAAGCAAAGAAATAACAGAAAAATTATGGTGGCGTAGTATCTTGTAGTTATTCGTAAATCCAACTGTTTATCTTGTAATTATCCGTAAATCCAACTGTTGGTCTTCTCATATAGCAGGTTCAACCAGGCCCCAGTAACCACTGTTACATTTTTGGACTGTTGTCTGCTCTTTAGTTATTTAGTAAATTTTTATAAATTAGCAGACCCCTTCTTTTGCTTGCATCTTCTTGATGCCTTCTAATGAAATCTCTTTCATCTAAAAAAGATATTCATAACTTGAATAGGGTATGTGCATAATGTTATATAATTATAATAATCCTCACAGATCTTCCTGAATTTATGTTCAGATTGTCAGTGAGCATTAGCTAGATTGTTTGGCTCCTCCCACTTCTCAGTGAAGTAGATTCTTAAGTAGGCGGTTGTTGATGAGACCAATTAGACTGCAACCTAGCCTTTCACTTGTGTCCATTAGTTTGCGTCAAGTGCAATTTTGTTGATTTCATCTTTTACATCCATAATCACACAGAATAGTACACTTGGATTATGTCAAATTACATGTGAAATAGGCTTGGAAGAACTAATATGTATTAAGTTTGTAACTTGAAAGAGATAGGTAACTAACATGTAAGCAGGCTTAGTTATAGGTAATTGATAATATTGATCATTATAGATGCTCTTGCTAACTGAAACATCCTTCAGGGCGTGTAAAGCATATTTTCATGTATTTTTTGTTGGGTTCTGAAGAAAGTCTTCATTTTTTATGTAAGTTTGATGCAGCTGAGTAGAATCTATAGTGGTATTCTTGTTTCATCTGATGTATGTTTCTAAGCTTGTTCTGGAAGTGACATCAACCACTTATTAGCATCACCATTTACCTAGCACATTTTTGGTTCAAGTGATAGTCCAAAGGCTACTTGTAAAAGAAACTGATACTCTAAAGAGAACCAAATGTCCAACATATTTATCATATTACTTTTTTTTTTTTGCAATTTCTGTATGCGCGATTAATGAAAAAAGCTATTGTGATGTTGCATTACTACTGCTATATATTTTATTAATCCTCTTCCCCCACTAAAACCAAAAGAAAGACTGTTAGAAGTAGTGAATTCAGGCAATTCAAGACTAGTAAACAATGCTCTACTTACAATTTTTTCTTCTACTTTTCAGGTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGA</genome_strand>
        <mrna_strand>AATCGGCCGAATTGGGCCGCCGTCGAATTTCTCCC................................................................................TATTTGAATAGCAGCAGAAGAGAAATCAAGAGCGTAAAGATGAGCCGAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATCGACTGTTCGAAGCCAGTGGAGGACAGTATTATGGAGATTGCTTCTCTTGACAAGTTCCTTCAAGAGAGAATTAAGGTTGGTGGAAAAGCTGGTGCACTTGGAGATTCCGTTACTGTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATTTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272167" ref_strand="+" ref_description="SGN-E272167 [cLEN-4-K23]">
      <seq>cgtcgaatttctccctatttgaatagcagcagaagagaaatcaagagcgtaaagatgagccgagcagcagcagcagtgaagggcgggaagaagaagggggcaagcttcgtcatcgactgttcgaagccagtggaggacagtattatggagattgcttctcttgacaagttcctccaagagagaattaaggttggtggaaaagctggtgcacttggagattccgttactgtcactcgtgataagaataaaatcaccgtcacttgcaactccactttttccaagaggtacctcaaataccttgtcaaaaagtacttgaagaaaaacaacgttagggattggcttagggtgattgcttccaacaaggacaggaatgtttatgagttgcgctacttcaacattgccgagaatgaagcagatgaagaagattaaacatgtctagtcaatgtcccttttatcttcttattttgaaccttatatcatctgtttgagttattaatgagccgtatcttctcatttccagattattgattntttgtccccttatcagtaaaagaaaacgttactttgatacactttggtttgttcatctctggggtcaagtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="+" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="107853" stop="111081"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108065" g_stop="108079" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108080" i_stop="108159" i_length="80">
            <donor d_prob="0.876" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108160" g_stop="108428" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="284" r_length="269" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108429" i_stop="110461" i_length="2033">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110462" g_stop="110781" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="604" r_length="320" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="+" ref_id="SGN-E272167" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272167" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108065" e_stop="108079"/>
          <exon e_start="108160" e_stop="108428"/>
          <exon e_start="110462" e_stop="110781"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTCGAATTTCTCCCGTATGTATTTTCCAACTTTTTCTCCGGCGATGAACATGAGCTTTGTGTTTGAGATCTGACGATTTTTGTTTTGTTTTCAGTATTTGAATAGCAGCAGAAGAGAAATCAAGAGCGTAAAGATGAGCCGAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATCGACTGTTCGAAGCCAGTGGAGGACAGTATTATGGAGATTGCTTCTCTTGACAAGTTCCTCCAAGAGAGAATTAAGGTTGGTGGAAAAGCTGGTGCACTTGGAGATTCCGTTACTGTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAGGTACTGACTAGTACTATATTTCCACTCCTCATTTCGTGTAATTTGGGTTTTTGCCTGATTTTTAATTGGGTTTATTTGAAAAAATTGATCGTTGAAACTTCGTGTGGGTCGACTTTCATTGTAGTTTGATAATGTTTACACTGACAGATTGATAGGATTTTAGCGTAAACCTATTCTTTTATTCGGGATGTGCTATGCTCTGCAAGGAGTTGTTTTGTTTGGAATAGTGTAGTCATTCACGCATTGAGCTTTGAGTCAGTTGATAATGGGTTAAAATAGAGTTCTTTTTGCAGTTTATTTTAGTTATCAATAGTGATGATGATTGTGTGTTTGTGTTATGTCATTCTACTGCTTGTTTATTCAAAATATTATCCTATTTACATTGAGAAATAAGGAGAAATAGAAGAACTAAAACAGCAGCGTAATATCTTGTAGGTAACCATTTGTATCTTGAACTAGGTATCCTAATTATCCTTGTAGCTCTTGCTGAACTTATGGAACAGATAGTCTATGAGCTCTACACTTCAACGTCCAAGATTAGAAATCGGGGTTGGCTTTTATCGTACTTGGATTATTTTCACAACTGACAGATTGAAATTAACTTATCATAGCCTCTTTTATTGTGGCTTGTTTCTGCTTTACCAAGAGCTCTTATTTGGAATAGTGCATTCATTTATATTTTAAGCTCAGAGTAGATTAACAGTGGTTTTCAAAAGAGGTCCTTTTTGCTGTTTATTTTAGTTTGAGTGCCCTGCACTGCAAGTCTAATAAATAAGCCCTTCTATTCTGGAGTTATTACATTGAAGAGGATGAGCTTATGTCATTCTACTTTTCGTTCATCTAATGCATTATCTTACTTACATTGAGAAGCAAAGAAATAACAGAAAAATTATGGTGGCGTAGTATCTTGTAGTTATTCGTAAATCCAACTGTTTATCTTGTAATTATCCGTAAATCCAACTGTTGGTCTTCTCATATAGCAGGTTCAACCAGGCCCCAGTAACCACTGTTACATTTTTGGACTGTTGTCTGCTCTTTAGTTATTTAGTAAATTTTTATAAATTAGCAGACCCCTTCTTTTGCTTGCATCTTCTTGATGCCTTCTAATGAAATCTCTTTCATCTAAAAAAGATATTCATAACTTGAATAGGGTATGTGCATAATGTTATATAATTATAATAATCCTCACAGATCTTCCTGAATTTATGTTCAGATTGTCAGTGAGCATTAGCTAGATTGTTTGGCTCCTCCCACTTCTCAGTGAAGTAGATTCTTAAGTAGGCGGTTGTTGATGAGACCAATTAGACTGCAACCTAGCCTTTCACTTGTGTCCATTAGTTTGCGTCAAGTGCAATTTTGTTGATTTCATCTTTTACATCCATAATCACACAGAATAGTACACTTGGATTATGTCAAATTACATGTGAAATAGGCTTGGAAGAACTAATATGTATTAAGTTTGTAACTTGAAAGAGATAGGTAACTAACATGTAAGCAGGCTTAGTTATAGGTAATTGATAATATTGATCATTATAGATGCTCTTGCTAACTGAAACATCCTTCAGGGCGTGTAAAGCATATTTTCATGTATTTTTTGTTGGGTTCTGAAGAAAGTCTTCATTTTTTATGTAAGTTTGATGCAGCTGAGTAGAATCTATAGTGGTATTCTTGTTTCATCTGATGTATGTTTCTAAGCTTGTTCTGGAAGTGACATCAACCACTTATTAGCATCACCATTTACCTAGCACATTTTTGGTTCAAGTGATAGTCCAAAGGCTACTTGTAAAAGAAACTGATACTCTAAAGAGAACCAAATGTCCAACATATTTATCATATTACTTTTTTTTTTTTGCAATTTCTGTATGCGCGATTAATGAAAAAAGCTATTGTGATGTTGCATTACTACTGCTATATATTTTATTAATCCTCTTCCCCCACTAAAACCAAAAGAAAGACTGTTAGAAGTAGTGAATTCAGGCAATTCAAGACTAGTAAACAATGCTCTACTTACAATTTTTTCTTCTACTTTTCAGGTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATTATTGATTTTTTGTCCCCTTATCAGTAAAAGAAAACGTTACTTTGATACACTTTGGTTTGTTCATCTCTGGGGTCAAGTTTT</genome_strand>
        <mrna_strand>CGTCGAATTTCTCCC................................................................................TATTTGAATAGCAGCAGAAGAGAAATCAAGAGCGTAAAGATGAGCCGAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATCGACTGTTCGAAGCCAGTGGAGGACAGTATTATGGAGATTGCTTCTCTTGACAAGTTCCTCCAAGAGAGAATTAAGGTTGGTGGAAAAGCTGGTGCACTTGGAGATTCCGTTACTGTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATTATTGATTNTTTGTCCCCTTATCAGTAAAAGAAAACGTTACTTTGATACACTTTGGTTTGTTCATCTCTGGGGTCAAGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E703764" ref_strand="+" ref_description="SGN-E703764 [FA22BF05]">
      <seq>gtcgaatttctccctatttgaatagcagcagaagagaaatcaagagcgtaaagatgagccgagcagcagcagcagtgaagggcgggaagaagaagggggcaagcttcgtcatcgactgttcgaagccagtggaggacagtattatggagattgcttctcttgacaagttccttcaagagagaattaaggttggtggaaaagctggtgcacttggagattccgttactgtcactcgtgataagaataaaatcaccgtcacttgcaactccactttttccaagaggtacctcaaataccttgtcaaaaagtacttgaagaaaaacaacgttagggattggcttagggtgattgcttccaacaaggacaggaatgttatgagttgcgctacttcaacattgccgagaatgaagcagatgaagaagattaaacatttctagtcaatgtcccttttatcttcttattttgaaccttatatcatctgtttgagttattaatgagccgtatcttctcatttccagattattgattttttgtccccttatcagtaaaagaaaacgttactttgatacactttggtttgttcatctctggggtcaagtttttgcaaggcatcaatttctctgtattgccttttccctcttgatgatcacatgtaatttattgagtttatcttttgttgttcttgtgtctttcttttaaccactgcgccattgatgatttccttcaatccttngaaagatcgattgagactaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="+" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="107853" stop="111231"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108066" g_stop="108079" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108080" i_stop="108159" i_length="80">
            <donor d_prob="0.876" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108160" g_stop="108428" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="283" r_length="269" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108429" i_stop="110461" i_length="2033">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110462" g_stop="110940" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="761" r_length="478" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="+" ref_id="SGN-E703764" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703764" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108066" e_stop="108079"/>
          <exon e_start="108160" e_stop="108428"/>
          <exon e_start="110462" e_stop="110940"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGAATTTCTCCCGTATGTATTTTCCAACTTTTTCTCCGGCGATGAACATGAGCTTTGTGTTTGAGATCTGACGATTTTTGTTTTGTTTTCAGTATTTGAATAGCAGCAGAAGAGAAATCAAGAGCGTAAAGATGAGCCGAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATCGACTGTTCGAAGCCAGTGGAGGACAGTATTATGGAGATTGCTTCTCTTGACAAGTTCCTCCAAGAGAGAATTAAGGTTGGTGGAAAAGCTGGTGCACTTGGAGATTCCGTTACTGTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAGGTACTGACTAGTACTATATTTCCACTCCTCATTTCGTGTAATTTGGGTTTTTGCCTGATTTTTAATTGGGTTTATTTGAAAAAATTGATCGTTGAAACTTCGTGTGGGTCGACTTTCATTGTAGTTTGATAATGTTTACACTGACAGATTGATAGGATTTTAGCGTAAACCTATTCTTTTATTCGGGATGTGCTATGCTCTGCAAGGAGTTGTTTTGTTTGGAATAGTGTAGTCATTCACGCATTGAGCTTTGAGTCAGTTGATAATGGGTTAAAATAGAGTTCTTTTTGCAGTTTATTTTAGTTATCAATAGTGATGATGATTGTGTGTTTGTGTTATGTCATTCTACTGCTTGTTTATTCAAAATATTATCCTATTTACATTGAGAAATAAGGAGAAATAGAAGAACTAAAACAGCAGCGTAATATCTTGTAGGTAACCATTTGTATCTTGAACTAGGTATCCTAATTATCCTTGTAGCTCTTGCTGAACTTATGGAACAGATAGTCTATGAGCTCTACACTTCAACGTCCAAGATTAGAAATCGGGGTTGGCTTTTATCGTACTTGGATTATTTTCACAACTGACAGATTGAAATTAACTTATCATAGCCTCTTTTATTGTGGCTTGTTTCTGCTTTACCAAGAGCTCTTATTTGGAATAGTGCATTCATTTATATTTTAAGCTCAGAGTAGATTAACAGTGGTTTTCAAAAGAGGTCCTTTTTGCTGTTTATTTTAGTTTGAGTGCCCTGCACTGCAAGTCTAATAAATAAGCCCTTCTATTCTGGAGTTATTACATTGAAGAGGATGAGCTTATGTCATTCTACTTTTCGTTCATCTAATGCATTATCTTACTTACATTGAGAAGCAAAGAAATAACAGAAAAATTATGGTGGCGTAGTATCTTGTAGTTATTCGTAAATCCAACTGTTTATCTTGTAATTATCCGTAAATCCAACTGTTGGTCTTCTCATATAGCAGGTTCAACCAGGCCCCAGTAACCACTGTTACATTTTTGGACTGTTGTCTGCTCTTTAGTTATTTAGTAAATTTTTATAAATTAGCAGACCCCTTCTTTTGCTTGCATCTTCTTGATGCCTTCTAATGAAATCTCTTTCATCTAAAAAAGATATTCATAACTTGAATAGGGTATGTGCATAATGTTATATAATTATAATAATCCTCACAGATCTTCCTGAATTTATGTTCAGATTGTCAGTGAGCATTAGCTAGATTGTTTGGCTCCTCCCACTTCTCAGTGAAGTAGATTCTTAAGTAGGCGGTTGTTGATGAGACCAATTAGACTGCAACCTAGCCTTTCACTTGTGTCCATTAGTTTGCGTCAAGTGCAATTTTGTTGATTTCATCTTTTACATCCATAATCACACAGAATAGTACACTTGGATTATGTCAAATTACATGTGAAATAGGCTTGGAAGAACTAATATGTATTAAGTTTGTAACTTGAAAGAGATAGGTAACTAACATGTAAGCAGGCTTAGTTATAGGTAATTGATAATATTGATCATTATAGATGCTCTTGCTAACTGAAACATCCTTCAGGGCGTGTAAAGCATATTTTCATGTATTTTTTGTTGGGTTCTGAAGAAAGTCTTCATTTTTTATGTAAGTTTGATGCAGCTGAGTAGAATCTATAGTGGTATTCTTGTTTCATCTGATGTATGTTTCTAAGCTTGTTCTGGAAGTGACATCAACCACTTATTAGCATCACCATTTACCTAGCACATTTTTGGTTCAAGTGATAGTCCAAAGGCTACTTGTAAAAGAAACTGATACTCTAAAGAGAACCAAATGTCCAACATATTTATCATATTACTTTTTTTTTTTTGCAATTTCTGTATGCGCGATTAATGAAAAAAGCTATTGTGATGTTGCATTACTACTGCTATATATTTTATTAATCCTCTTCCCCCACTAAAACCAAAAGAAAGACTGTTAGAAGTAGTGAATTCAGGCAATTCAAGACTAGTAAACAATGCTCTACTTACAATTTTTTCTTCTACTTTTCAGGTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATTATTGATTTTTTGTCCCCTTATCAGTAAAAGAAAACGTTACTTTGATACACTTTGGTTTGTTCATCTCTGGGGTCAAGTTTTTGCAAGGCATCAATTTCTCTGTATTGCCTTTTCCCTCTTGATGATCACATGTAATTTATAGAGTTTATCTTTTGTTGTTCTTGTGTCTTTCTTTTAACCACTGCGCCATTGATGATTTCCTTCAATCCTTGAAAAGATCGATTGAGACTACCTTCATTG</genome_strand>
        <mrna_strand>GTCGAATTTCTCCC................................................................................TATTTGAATAGCAGCAGAAGAGAAATCAAGAGCGTAAAGATGAGCCGAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATCGACTGTTCGAAGCCAGTGGAGGACAGTATTATGGAGATTGCTTCTCTTGACAAGTTCCTTCAAGAGAGAATTAAGGTTGGTGGAAAAGCTGGTGCACTTGGAGATTCCGTTACTGTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATG-TTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATTTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATTATTGATTTTTTGTCCCCTTATCAGTAAAAGAAAACGTTACTTTGATACACTTTGGTTTGTTCATCTCTGGGGTCAAGTTTTTGCAAGGCATCAATTTCTCTGTATTGCCTTTTCCCTCTTGATGATCACATGTAATTTATTGAGTTTATCTTTTGTTGTTCTTGTGTCTTTCTTTTAACCACTGCGCCATTGATGATTTCCTTCAATCCTTNGAAAGATCGATTGAGACTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E594909" ref_strand="+" ref_description="SGN-E594909 [38171]">
      <seq>cgaattctccctatttgaataacagcagaagagaaataagagtgtaaagatgagccgagcagcagcagcagcagcgaagggcgggaagaagaagggggcaagcttcgtcattgactgttctaagccagtggaggacagtatcatggagattgcctctcttgacaagttccttcaagagagaattaaggttggtggaaaagctggtgctcttggagattccgtcattgtcagtcgtgataagaacaagatcaccgtcacttgcaactccactttctccaagaggtacctcaaataccttgtcaaaaagtacttgaagaaaaataacgttagggattggcttagggtgattgcttccaacaaggacaggaatgtttatgagttgcgctacttcaacattgccgagaatgaagcagatgaagaagattaaacatggctattcaatgaccctttatcttcttattttgaaccttatatcatctgtttgagttattaatgagttgtatcttctcatttctagattattgattttttgttcccttatcagtaaaagaaaacatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="+" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="107853" stop="111039"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108068" g_stop="108079" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="0.917"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108080" i_stop="108159" i_length="80">
            <donor d_prob="0.876" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="0.81"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108160" g_stop="108428" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="282" r_length="271" r_score="0.918"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108429" i_stop="110461" i_length="2033">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110462" g_stop="110739" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="559" r_length="277" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="+" ref_id="SGN-E594909" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E594909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108068" e_stop="108079"/>
          <exon e_start="108160" e_stop="108428"/>
          <exon e_start="110462" e_stop="110739"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAATTTCTCCCGTATGTATTTTCCAACTTTTTCTCCGGCGATGAACATGAGCTTTGTGTTTGAGATCTGACGATTTTTGTTTTGTTTTCAGTATTTGAATAGCAGCAGAAGAGAAATCAAGAGCGTAAAGATGAGCC--G-AGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATCGACTGTTCGAAGCCAGTGGAGGACAGTATTATGGAGATTGCTTCTCTTGACAAGTTCCTCCAAGAGAGAATTAAGGTTGGTGGAAAAGCTGGTGCACTTGGAGATTCCGTTACTGTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAGGTACTGACTAGTACTATATTTCCACTCCTCATTTCGTGTAATTTGGGTTTTTGCCTGATTTTTAATTGGGTTTATTTGAAAAAATTGATCGTTGAAACTTCGTGTGGGTCGACTTTCATTGTAGTTTGATAATGTTTACACTGACAGATTGATAGGATTTTAGCGTAAACCTATTCTTTTATTCGGGATGTGCTATGCTCTGCAAGGAGTTGTTTTGTTTGGAATAGTGTAGTCATTCACGCATTGAGCTTTGAGTCAGTTGATAATGGGTTAAAATAGAGTTCTTTTTGCAGTTTATTTTAGTTATCAATAGTGATGATGATTGTGTGTTTGTGTTATGTCATTCTACTGCTTGTTTATTCAAAATATTATCCTATTTACATTGAGAAATAAGGAGAAATAGAAGAACTAAAACAGCAGCGTAATATCTTGTAGGTAACCATTTGTATCTTGAACTAGGTATCCTAATTATCCTTGTAGCTCTTGCTGAACTTATGGAACAGATAGTCTATGAGCTCTACACTTCAACGTCCAAGATTAGAAATCGGGGTTGGCTTTTATCGTACTTGGATTATTTTCACAACTGACAGATTGAAATTAACTTATCATAGCCTCTTTTATTGTGGCTTGTTTCTGCTTTACCAAGAGCTCTTATTTGGAATAGTGCATTCATTTATATTTTAAGCTCAGAGTAGATTAACAGTGGTTTTCAAAAGAGGTCCTTTTTGCTGTTTATTTTAGTTTGAGTGCCCTGCACTGCAAGTCTAATAAATAAGCCCTTCTATTCTGGAGTTATTACATTGAAGAGGATGAGCTTATGTCATTCTACTTTTCGTTCATCTAATGCATTATCTTACTTACATTGAGAAGCAAAGAAATAACAGAAAAATTATGGTGGCGTAGTATCTTGTAGTTATTCGTAAATCCAACTGTTTATCTTGTAATTATCCGTAAATCCAACTGTTGGTCTTCTCATATAGCAGGTTCAACCAGGCCCCAGTAACCACTGTTACATTTTTGGACTGTTGTCTGCTCTTTAGTTATTTAGTAAATTTTTATAAATTAGCAGACCCCTTCTTTTGCTTGCATCTTCTTGATGCCTTCTAATGAAATCTCTTTCATCTAAAAAAGATATTCATAACTTGAATAGGGTATGTGCATAATGTTATATAATTATAATAATCCTCACAGATCTTCCTGAATTTATGTTCAGATTGTCAGTGAGCATTAGCTAGATTGTTTGGCTCCTCCCACTTCTCAGTGAAGTAGATTCTTAAGTAGGCGGTTGTTGATGAGACCAATTAGACTGCAACCTAGCCTTTCACTTGTGTCCATTAGTTTGCGTCAAGTGCAATTTTGTTGATTTCATCTTTTACATCCATAATCACACAGAATAGTACACTTGGATTATGTCAAATTACATGTGAAATAGGCTTGGAAGAACTAATATGTATTAAGTTTGTAACTTGAAAGAGATAGGTAACTAACATGTAAGCAGGCTTAGTTATAGGTAATTGATAATATTGATCATTATAGATGCTCTTGCTAACTGAAACATCCTTCAGGGCGTGTAAAGCATATTTTCATGTATTTTTTGTTGGGTTCTGAAGAAAGTCTTCATTTTTTATGTAAGTTTGATGCAGCTGAGTAGAATCTATAGTGGTATTCTTGTTTCATCTGATGTATGTTTCTAAGCTTGTTCTGGAAGTGACATCAACCACTTATTAGCATCACCATTTACCTAGCACATTTTTGGTTCAAGTGATAGTCCAAAGGCTACTTGTAAAAGAAACTGATACTCTAAAGAGAACCAAATGTCCAACATATTTATCATATTACTTTTTTTTTTTTGCAATTTCTGTATGCGCGATTAATGAAAAAAGCTATTGTGATGTTGCATTACTACTGCTATATATTTTATTAATCCTCTTCCCCCACTAAAACCAAAAGAAAGACTGTTAGAAGTAGTGAATTCAGGCAATTCAAGACTAGTAAACAATGCTCTACTTACAATTTTTTCTTCTACTTTTCAGGTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATTATTGATTTTTTGTCCCCTTATCAGTAAAAGAAAACGTTA</genome_strand>
        <mrna_strand>CGAAT-TCTCCC................................................................................TATTTGAATAACAGCAGAAGAGAAAT-AAGAGTGTAAAGATGAGCCGAGCAGCAGCAGCAGCAGCGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATTGACTGTTCTAAGCCAGTGGAGGACAGTATCATGGAGATTGCCTCTCTTGACAAGTTCCTTCAAGAGAGAATTAAGGTTGGTGGAAAAGCTGGTGCTCTTGGAGATTCCGTCATTGTCAGTCGTGATAAGAACAAGATCACCGTCACTTGCAACTCCACTTTCTCCAAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAATAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGGCTATTCAATGACCC-TTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGTTGTATCTTCTCATTTCTAGATTATTGATTTTTTGTTCCCTTATCAGTAAAAGAAAACATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E336142" ref_strand="+" ref_description="SGN-E336142 [cTOE-12-K3]">
      <seq>tttctccctatttgaatagcagcagaagagaaatcaagagcgtaaagatgagccgagcagcagcagcagtgaagggcgggaagaagaagggggcaagcttcgtcatcgactgttcgaagccagtggaggacagtattatggagattgcttctcttgacaagttcctccaagagagaattaaggttggtggaaaagctggtgcacttggagattccgttactgtcactcgtgataagaataaaatcaccgtcacttgcaactccactttttccaagaggtacctcaaataccttgtcaaaaagtacttgaagaaaaacaacgttagggattggcttagggtgattgcttccaacaaggacaggaatgtttatgagttgcgctacttcaacattgccgagaatgaagcagatgaagaagattaaacatgtctagtcaatgtcccttttatcttcttattttgaaccttatatcatctgtttgagttattaatgagccgtatcttctcatttccagattattgattttttgtccccttatcagtaaaagaaaacgttactttgatacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="+" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="107852" stop="111049"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108072" g_stop="108079" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="8" r_length="8" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108080" i_stop="108159" i_length="80">
            <donor d_prob="0.876" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108160" g_stop="108428" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="277" r_length="269" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108429" i_stop="110461" i_length="2033">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110462" g_stop="110749" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="565" r_length="288" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="+" ref_id="SGN-E336142" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336142" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108072" e_stop="108079"/>
          <exon e_start="108160" e_stop="108428"/>
          <exon e_start="110462" e_stop="110749"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCCCGTATGTATTTTCCAACTTTTTCTCCGGCGATGAACATGAGCTTTGTGTTTGAGATCTGACGATTTTTGTTTTGTTTTCAGTATTTGAATAGCAGCAGAAGAGAAATCAAGAGCGTAAAGATGAGCCGAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATCGACTGTTCGAAGCCAGTGGAGGACAGTATTATGGAGATTGCTTCTCTTGACAAGTTCCTCCAAGAGAGAATTAAGGTTGGTGGAAAAGCTGGTGCACTTGGAGATTCCGTTACTGTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAGGTACTGACTAGTACTATATTTCCACTCCTCATTTCGTGTAATTTGGGTTTTTGCCTGATTTTTAATTGGGTTTATTTGAAAAAATTGATCGTTGAAACTTCGTGTGGGTCGACTTTCATTGTAGTTTGATAATGTTTACACTGACAGATTGATAGGATTTTAGCGTAAACCTATTCTTTTATTCGGGATGTGCTATGCTCTGCAAGGAGTTGTTTTGTTTGGAATAGTGTAGTCATTCACGCATTGAGCTTTGAGTCAGTTGATAATGGGTTAAAATAGAGTTCTTTTTGCAGTTTATTTTAGTTATCAATAGTGATGATGATTGTGTGTTTGTGTTATGTCATTCTACTGCTTGTTTATTCAAAATATTATCCTATTTACATTGAGAAATAAGGAGAAATAGAAGAACTAAAACAGCAGCGTAATATCTTGTAGGTAACCATTTGTATCTTGAACTAGGTATCCTAATTATCCTTGTAGCTCTTGCTGAACTTATGGAACAGATAGTCTATGAGCTCTACACTTCAACGTCCAAGATTAGAAATCGGGGTTGGCTTTTATCGTACTTGGATTATTTTCACAACTGACAGATTGAAATTAACTTATCATAGCCTCTTTTATTGTGGCTTGTTTCTGCTTTACCAAGAGCTCTTATTTGGAATAGTGCATTCATTTATATTTTAAGCTCAGAGTAGATTAACAGTGGTTTTCAAAAGAGGTCCTTTTTGCTGTTTATTTTAGTTTGAGTGCCCTGCACTGCAAGTCTAATAAATAAGCCCTTCTATTCTGGAGTTATTACATTGAAGAGGATGAGCTTATGTCATTCTACTTTTCGTTCATCTAATGCATTATCTTACTTACATTGAGAAGCAAAGAAATAACAGAAAAATTATGGTGGCGTAGTATCTTGTAGTTATTCGTAAATCCAACTGTTTATCTTGTAATTATCCGTAAATCCAACTGTTGGTCTTCTCATATAGCAGGTTCAACCAGGCCCCAGTAACCACTGTTACATTTTTGGACTGTTGTCTGCTCTTTAGTTATTTAGTAAATTTTTATAAATTAGCAGACCCCTTCTTTTGCTTGCATCTTCTTGATGCCTTCTAATGAAATCTCTTTCATCTAAAAAAGATATTCATAACTTGAATAGGGTATGTGCATAATGTTATATAATTATAATAATCCTCACAGATCTTCCTGAATTTATGTTCAGATTGTCAGTGAGCATTAGCTAGATTGTTTGGCTCCTCCCACTTCTCAGTGAAGTAGATTCTTAAGTAGGCGGTTGTTGATGAGACCAATTAGACTGCAACCTAGCCTTTCACTTGTGTCCATTAGTTTGCGTCAAGTGCAATTTTGTTGATTTCATCTTTTACATCCATAATCACACAGAATAGTACACTTGGATTATGTCAAATTACATGTGAAATAGGCTTGGAAGAACTAATATGTATTAAGTTTGTAACTTGAAAGAGATAGGTAACTAACATGTAAGCAGGCTTAGTTATAGGTAATTGATAATATTGATCATTATAGATGCTCTTGCTAACTGAAACATCCTTCAGGGCGTGTAAAGCATATTTTCATGTATTTTTTGTTGGGTTCTGAAGAAAGTCTTCATTTTTTATGTAAGTTTGATGCAGCTGAGTAGAATCTATAGTGGTATTCTTGTTTCATCTGATGTATGTTTCTAAGCTTGTTCTGGAAGTGACATCAACCACTTATTAGCATCACCATTTACCTAGCACATTTTTGGTTCAAGTGATAGTCCAAAGGCTACTTGTAAAAGAAACTGATACTCTAAAGAGAACCAAATGTCCAACATATTTATCATATTACTTTTTTTTTTTTGCAATTTCTGTATGCGCGATTAATGAAAAAAGCTATTGTGATGTTGCATTACTACTGCTATATATTTTATTAATCCTCTTCCCCCACTAAAACCAAAAGAAAGACTGTTAGAAGTAGTGAATTCAGGCAATTCAAGACTAGTAAACAATGCTCTACTTACAATTTTTTCTTCTACTTTTCAGGTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATTATTGATTTTTTGTCCCCTTATCAGTAAAAGAAAACGTTACTTTGATACA</genome_strand>
        <mrna_strand>TTTCTCCC................................................................................TATTTGAATAGCAGCAGAAGAGAAATCAAGAGCGTAAAGATGAGCCGAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATCGACTGTTCGAAGCCAGTGGAGGACAGTATTATGGAGATTGCTTCTCTTGACAAGTTCCTCCAAGAGAGAATTAAGGTTGGTGGAAAAGCTGGTGCACTTGGAGATTCCGTTACTGTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATTATTGATTTTTTGTCCCCTTATCAGTAAAAGAAAACGTTACTTTGATACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E619725" ref_strand="-" ref_description="SGN-E619725 [70418]">
      <seq>ctccctatttgaataacagcagaagagaaataagagtgtaaagatgagccgagcagcagcagcagcagcgaagggcgggaagaagaagggggcaagcttcgtcattgactgttctaagccagtggaggacagtatcatggagattgcctctcttgacaagttccttcaagagagaatcaaggttggtggaaaagctggtgctcttggagattccgtcattgtcagtcgtgataagaacaagatcaccgtcacttgcaactccactttctccaagaggtacctcaaataccttgtcaaaaagtacttgaagaaaaataacgttagggattggcttagggtgattgcttccaacaaggacaggaatgtttatgagttgcgctacttcaacattgccgagaatgaagcagatgaagaagattaaacatggctattcaatgaccctttatcttcttattttgaaccttatatcatctgtttgagttattaatgagttgtatcttctcatttctagattattgattttttgttcccttatcagtaaaagaaaacattactttgatactttggtttgttcatctttggggtcaactttttgcaagtcatcaatttctctgtattgccttttccctcttgatgatcacatgtaattttttgagtttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="+" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="107856" stop="111148"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108075" g_stop="108079" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="5" r_length="5" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108080" i_stop="108159" i_length="80">
            <donor d_prob="0.876" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="0.81"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108160" g_stop="108428" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="276" r_length="271" r_score="0.914"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108429" i_stop="110461" i_length="2033">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110462" g_stop="110849" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="661" r_length="385" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="+" ref_id="SGN-E619725" ref_strand="-">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E619725" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="108075" e_stop="108079"/>
          <exon e_start="108160" e_stop="108428"/>
          <exon e_start="110462" e_stop="110849"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCCGTATGTATTTTCCAACTTTTTCTCCGGCGATGAACATGAGCTTTGTGTTTGAGATCTGACGATTTTTGTTTTGTTTTCAGTATTTGAATAGCAGCAGAAGAGAAATCAAGAGCGTAAAGATGAGCC--G-AGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATCGACTGTTCGAAGCCAGTGGAGGACAGTATTATGGAGATTGCTTCTCTTGACAAGTTCCTCCAAGAGAGAATTAAGGTTGGTGGAAAAGCTGGTGCACTTGGAGATTCCGTTACTGTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAGGTACTGACTAGTACTATATTTCCACTCCTCATTTCGTGTAATTTGGGTTTTTGCCTGATTTTTAATTGGGTTTATTTGAAAAAATTGATCGTTGAAACTTCGTGTGGGTCGACTTTCATTGTAGTTTGATAATGTTTACACTGACAGATTGATAGGATTTTAGCGTAAACCTATTCTTTTATTCGGGATGTGCTATGCTCTGCAAGGAGTTGTTTTGTTTGGAATAGTGTAGTCATTCACGCATTGAGCTTTGAGTCAGTTGATAATGGGTTAAAATAGAGTTCTTTTTGCAGTTTATTTTAGTTATCAATAGTGATGATGATTGTGTGTTTGTGTTATGTCATTCTACTGCTTGTTTATTCAAAATATTATCCTATTTACATTGAGAAATAAGGAGAAATAGAAGAACTAAAACAGCAGCGTAATATCTTGTAGGTAACCATTTGTATCTTGAACTAGGTATCCTAATTATCCTTGTAGCTCTTGCTGAACTTATGGAACAGATAGTCTATGAGCTCTACACTTCAACGTCCAAGATTAGAAATCGGGGTTGGCTTTTATCGTACTTGGATTATTTTCACAACTGACAGATTGAAATTAACTTATCATAGCCTCTTTTATTGTGGCTTGTTTCTGCTTTACCAAGAGCTCTTATTTGGAATAGTGCATTCATTTATATTTTAAGCTCAGAGTAGATTAACAGTGGTTTTCAAAAGAGGTCCTTTTTGCTGTTTATTTTAGTTTGAGTGCCCTGCACTGCAAGTCTAATAAATAAGCCCTTCTATTCTGGAGTTATTACATTGAAGAGGATGAGCTTATGTCATTCTACTTTTCGTTCATCTAATGCATTATCTTACTTACATTGAGAAGCAAAGAAATAACAGAAAAATTATGGTGGCGTAGTATCTTGTAGTTATTCGTAAATCCAACTGTTTATCTTGTAATTATCCGTAAATCCAACTGTTGGTCTTCTCATATAGCAGGTTCAACCAGGCCCCAGTAACCACTGTTACATTTTTGGACTGTTGTCTGCTCTTTAGTTATTTAGTAAATTTTTATAAATTAGCAGACCCCTTCTTTTGCTTGCATCTTCTTGATGCCTTCTAATGAAATCTCTTTCATCTAAAAAAGATATTCATAACTTGAATAGGGTATGTGCATAATGTTATATAATTATAATAATCCTCACAGATCTTCCTGAATTTATGTTCAGATTGTCAGTGAGCATTAGCTAGATTGTTTGGCTCCTCCCACTTCTCAGTGAAGTAGATTCTTAAGTAGGCGGTTGTTGATGAGACCAATTAGACTGCAACCTAGCCTTTCACTTGTGTCCATTAGTTTGCGTCAAGTGCAATTTTGTTGATTTCATCTTTTACATCCATAATCACACAGAATAGTACACTTGGATTATGTCAAATTACATGTGAAATAGGCTTGGAAGAACTAATATGTATTAAGTTTGTAACTTGAAAGAGATAGGTAACTAACATGTAAGCAGGCTTAGTTATAGGTAATTGATAATATTGATCATTATAGATGCTCTTGCTAACTGAAACATCCTTCAGGGCGTGTAAAGCATATTTTCATGTATTTTTTGTTGGGTTCTGAAGAAAGTCTTCATTTTTTATGTAAGTTTGATGCAGCTGAGTAGAATCTATAGTGGTATTCTTGTTTCATCTGATGTATGTTTCTAAGCTTGTTCTGGAAGTGACATCAACCACTTATTAGCATCACCATTTACCTAGCACATTTTTGGTTCAAGTGATAGTCCAAAGGCTACTTGTAAAAGAAACTGATACTCTAAAGAGAACCAAATGTCCAACATATTTATCATATTACTTTTTTTTTTTTGCAATTTCTGTATGCGCGATTAATGAAAAAAGCTATTGTGATGTTGCATTACTACTGCTATATATTTTATTAATCCTCTTCCCCCACTAAAACCAAAAGAAAGACTGTTAGAAGTAGTGAATTCAGGCAATTCAAGACTAGTAAACAATGCTCTACTTACAATTTTTTCTTCTACTTTTCAGGTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATTATTGATTTTTTGTCCCCTTATCAGTAAAAGAAAACGTTACTTTGATACACTTTGGTTTGTTCATCTCTGGGGTCAAGTTTTTGCAAGGCATCAATTTCTCTGTATTGCCTTTTCCCTCTTGATGATCACATGTAATTTATAGAGTTTAT</genome_strand>
        <mrna_strand>CTCCC................................................................................TATTTGAATAACAGCAGAAGAGAAAT-AAGAGTGTAAAGATGAGCCGAGCAGCAGCAGCAGCAGCGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATTGACTGTTCTAAGCCAGTGGAGGACAGTATCATGGAGATTGCCTCTCTTGACAAGTTCCTTCAAGAGAGAATCAAGGTTGGTGGAAAAGCTGGTGCTCTTGGAGATTCCGTCATTGTCAGTCGTGATAAGAACAAGATCACCGTCACTTGCAACTCCACTTTCTCCAAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAATAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGGCTATTCAATGACCC-TTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGTTGTATCTTCTCATTTCTAGATTATTGATTTTTTGTTCCCTTATCAGTAAAAGAAAACATTACTTTGAT--ACTTTGGTTTGTTCATCTTTGGGGTCAACTTTTTGCAAGTCATCAATTTCTCTGTATTGCCTTTTCCCTCTTGATGATCACATGTAATTTTTTGAGTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E729939" ref_strand="+" ref_description="SGN-E729939 [LA22CC07]">
      <seq>ctccctatttgaatagcagcagaagagaaatcaagagcgtaaagatgagccgagcagcagcagcagtgaagggcgggaagaagaagggggcaagcttcgtcatcgactgttcgaagccagtggaggacagtattatggagattgcttctcttgacaagttccttcaagagagaattaaggttggtggaaaagctggtgcacttggagattccgttactgtcactcgtgataagaataaaatcaccgtcacttgcaactccactttttccaagaggtacctcaaataccttgtcaaaaagtacttgaagaaaaacaacgttagggattggcttagggtgattgcttccaacaaggacaggaatgtttatgagttgcgctacttcaacattgccgagaatgaagcagatgaagaagattaaacatttctagtcaatgtcccttttatcttcttattttgaaccttatatcatctgtttgagttattaatgagccgtatcttctcatttccagattattgattttttgtccccttatcagtaaaagaaaacgttactttgatacactttggtttgttcatctctggggtcaagtttttgcaaggcatcaatttctctgtaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="+" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="107856" stop="111104"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108075" g_stop="108079" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="5" r_length="5" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108080" i_stop="108159" i_length="80">
            <donor d_prob="0.876" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108160" g_stop="108428" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="274" r_length="269" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108429" i_stop="110461" i_length="2033">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110462" g_stop="110801" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="614" r_length="340" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="617" polyA_stop="631"/>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="+" ref_id="SGN-E729939" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729939" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108075" e_stop="108079"/>
          <exon e_start="108160" e_stop="108428"/>
          <exon e_start="110462" e_stop="110801"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCCGTATGTATTTTCCAACTTTTTCTCCGGCGATGAACATGAGCTTTGTGTTTGAGATCTGACGATTTTTGTTTTGTTTTCAGTATTTGAATAGCAGCAGAAGAGAAATCAAGAGCGTAAAGATGAGCCGAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATCGACTGTTCGAAGCCAGTGGAGGACAGTATTATGGAGATTGCTTCTCTTGACAAGTTCCTCCAAGAGAGAATTAAGGTTGGTGGAAAAGCTGGTGCACTTGGAGATTCCGTTACTGTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAGGTACTGACTAGTACTATATTTCCACTCCTCATTTCGTGTAATTTGGGTTTTTGCCTGATTTTTAATTGGGTTTATTTGAAAAAATTGATCGTTGAAACTTCGTGTGGGTCGACTTTCATTGTAGTTTGATAATGTTTACACTGACAGATTGATAGGATTTTAGCGTAAACCTATTCTTTTATTCGGGATGTGCTATGCTCTGCAAGGAGTTGTTTTGTTTGGAATAGTGTAGTCATTCACGCATTGAGCTTTGAGTCAGTTGATAATGGGTTAAAATAGAGTTCTTTTTGCAGTTTATTTTAGTTATCAATAGTGATGATGATTGTGTGTTTGTGTTATGTCATTCTACTGCTTGTTTATTCAAAATATTATCCTATTTACATTGAGAAATAAGGAGAAATAGAAGAACTAAAACAGCAGCGTAATATCTTGTAGGTAACCATTTGTATCTTGAACTAGGTATCCTAATTATCCTTGTAGCTCTTGCTGAACTTATGGAACAGATAGTCTATGAGCTCTACACTTCAACGTCCAAGATTAGAAATCGGGGTTGGCTTTTATCGTACTTGGATTATTTTCACAACTGACAGATTGAAATTAACTTATCATAGCCTCTTTTATTGTGGCTTGTTTCTGCTTTACCAAGAGCTCTTATTTGGAATAGTGCATTCATTTATATTTTAAGCTCAGAGTAGATTAACAGTGGTTTTCAAAAGAGGTCCTTTTTGCTGTTTATTTTAGTTTGAGTGCCCTGCACTGCAAGTCTAATAAATAAGCCCTTCTATTCTGGAGTTATTACATTGAAGAGGATGAGCTTATGTCATTCTACTTTTCGTTCATCTAATGCATTATCTTACTTACATTGAGAAGCAAAGAAATAACAGAAAAATTATGGTGGCGTAGTATCTTGTAGTTATTCGTAAATCCAACTGTTTATCTTGTAATTATCCGTAAATCCAACTGTTGGTCTTCTCATATAGCAGGTTCAACCAGGCCCCAGTAACCACTGTTACATTTTTGGACTGTTGTCTGCTCTTTAGTTATTTAGTAAATTTTTATAAATTAGCAGACCCCTTCTTTTGCTTGCATCTTCTTGATGCCTTCTAATGAAATCTCTTTCATCTAAAAAAGATATTCATAACTTGAATAGGGTATGTGCATAATGTTATATAATTATAATAATCCTCACAGATCTTCCTGAATTTATGTTCAGATTGTCAGTGAGCATTAGCTAGATTGTTTGGCTCCTCCCACTTCTCAGTGAAGTAGATTCTTAAGTAGGCGGTTGTTGATGAGACCAATTAGACTGCAACCTAGCCTTTCACTTGTGTCCATTAGTTTGCGTCAAGTGCAATTTTGTTGATTTCATCTTTTACATCCATAATCACACAGAATAGTACACTTGGATTATGTCAAATTACATGTGAAATAGGCTTGGAAGAACTAATATGTATTAAGTTTGTAACTTGAAAGAGATAGGTAACTAACATGTAAGCAGGCTTAGTTATAGGTAATTGATAATATTGATCATTATAGATGCTCTTGCTAACTGAAACATCCTTCAGGGCGTGTAAAGCATATTTTCATGTATTTTTTGTTGGGTTCTGAAGAAAGTCTTCATTTTTTATGTAAGTTTGATGCAGCTGAGTAGAATCTATAGTGGTATTCTTGTTTCATCTGATGTATGTTTCTAAGCTTGTTCTGGAAGTGACATCAACCACTTATTAGCATCACCATTTACCTAGCACATTTTTGGTTCAAGTGATAGTCCAAAGGCTACTTGTAAAAGAAACTGATACTCTAAAGAGAACCAAATGTCCAACATATTTATCATATTACTTTTTTTTTTTTGCAATTTCTGTATGCGCGATTAATGAAAAAAGCTATTGTGATGTTGCATTACTACTGCTATATATTTTATTAATCCTCTTCCCCCACTAAAACCAAAAGAAAGACTGTTAGAAGTAGTGAATTCAGGCAATTCAAGACTAGTAAACAATGCTCTACTTACAATTTTTTCTTCTACTTTTCAGGTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATTATTGATTTTTTGTCCCCTTATCAGTAAAAGAAAACGTTACTTTGATACACTTTGGTTTGTTCATCTCTGGGGTCAAGTTTTTGCAAGGCATCAATTTCTCT</genome_strand>
        <mrna_strand>CTCCC................................................................................TATTTGAATAGCAGCAGAAGAGAAATCAAGAGCGTAAAGATGAGCCGAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATCGACTGTTCGAAGCCAGTGGAGGACAGTATTATGGAGATTGCTTCTCTTGACAAGTTCCTTCAAGAGAGAATTAAGGTTGGTGGAAAAGCTGGTGCACTTGGAGATTCCGTTACTGTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATTTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATTATTGATTTTTTGTCCCCTTATCAGTAAAAGAAAACGTTACTTTGATACACTTTGGTTTGTTCATCTCTGGGGTCAAGTTTTTGCAAGGCATCAATTTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733323" ref_strand="+" ref_description="SGN-E733323 [LB04CC07]">
      <seq>ctccctatttgaatagcagcagaagagaaatcaagagcgtaaagatgagccgagcagcagcagcagtgaagggcgggaagaagaagggggcaagcttcgtcatcgactgttcgaagccagtggaggacagtattatggagattgcttctcttgacaagttccttcaagagagaattaaggttggtggaaaagctggtgcacttggagattccgttactgtcactcgtgataagaataaaatcaccgtcacttgcaactccactttttccaagaggtacctcaaataccttgtcaaaaagtacttgaagaaaaacaacgttagggattggcttagggtgattgcttccaacaaggacaggaatgtttatgagttgcgctacttcaacattgccgagaatgaagcagatgaagaagattaaacatttctagtcaatgtcccttttatcttcttattttgaaccttatatcatctgtttgagttattaatgagccgtatcttctcatttccagattattgattttttgtccccttatcagtaaaagaaaacgttactttgatacactttggtttgttcatctctggggtcaagtttttgcaaggcatcaatttctctgtaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="+" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="107856" stop="111104"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108075" g_stop="108079" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="5" r_length="5" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108080" i_stop="108159" i_length="80">
            <donor d_prob="0.876" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108160" g_stop="108428" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="274" r_length="269" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108429" i_stop="110461" i_length="2033">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110462" g_stop="110801" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="614" r_length="340" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="617" polyA_stop="632"/>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="+" ref_id="SGN-E733323" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733323" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108075" e_stop="108079"/>
          <exon e_start="108160" e_stop="108428"/>
          <exon e_start="110462" e_stop="110801"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCCGTATGTATTTTCCAACTTTTTCTCCGGCGATGAACATGAGCTTTGTGTTTGAGATCTGACGATTTTTGTTTTGTTTTCAGTATTTGAATAGCAGCAGAAGAGAAATCAAGAGCGTAAAGATGAGCCGAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATCGACTGTTCGAAGCCAGTGGAGGACAGTATTATGGAGATTGCTTCTCTTGACAAGTTCCTCCAAGAGAGAATTAAGGTTGGTGGAAAAGCTGGTGCACTTGGAGATTCCGTTACTGTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAGGTACTGACTAGTACTATATTTCCACTCCTCATTTCGTGTAATTTGGGTTTTTGCCTGATTTTTAATTGGGTTTATTTGAAAAAATTGATCGTTGAAACTTCGTGTGGGTCGACTTTCATTGTAGTTTGATAATGTTTACACTGACAGATTGATAGGATTTTAGCGTAAACCTATTCTTTTATTCGGGATGTGCTATGCTCTGCAAGGAGTTGTTTTGTTTGGAATAGTGTAGTCATTCACGCATTGAGCTTTGAGTCAGTTGATAATGGGTTAAAATAGAGTTCTTTTTGCAGTTTATTTTAGTTATCAATAGTGATGATGATTGTGTGTTTGTGTTATGTCATTCTACTGCTTGTTTATTCAAAATATTATCCTATTTACATTGAGAAATAAGGAGAAATAGAAGAACTAAAACAGCAGCGTAATATCTTGTAGGTAACCATTTGTATCTTGAACTAGGTATCCTAATTATCCTTGTAGCTCTTGCTGAACTTATGGAACAGATAGTCTATGAGCTCTACACTTCAACGTCCAAGATTAGAAATCGGGGTTGGCTTTTATCGTACTTGGATTATTTTCACAACTGACAGATTGAAATTAACTTATCATAGCCTCTTTTATTGTGGCTTGTTTCTGCTTTACCAAGAGCTCTTATTTGGAATAGTGCATTCATTTATATTTTAAGCTCAGAGTAGATTAACAGTGGTTTTCAAAAGAGGTCCTTTTTGCTGTTTATTTTAGTTTGAGTGCCCTGCACTGCAAGTCTAATAAATAAGCCCTTCTATTCTGGAGTTATTACATTGAAGAGGATGAGCTTATGTCATTCTACTTTTCGTTCATCTAATGCATTATCTTACTTACATTGAGAAGCAAAGAAATAACAGAAAAATTATGGTGGCGTAGTATCTTGTAGTTATTCGTAAATCCAACTGTTTATCTTGTAATTATCCGTAAATCCAACTGTTGGTCTTCTCATATAGCAGGTTCAACCAGGCCCCAGTAACCACTGTTACATTTTTGGACTGTTGTCTGCTCTTTAGTTATTTAGTAAATTTTTATAAATTAGCAGACCCCTTCTTTTGCTTGCATCTTCTTGATGCCTTCTAATGAAATCTCTTTCATCTAAAAAAGATATTCATAACTTGAATAGGGTATGTGCATAATGTTATATAATTATAATAATCCTCACAGATCTTCCTGAATTTATGTTCAGATTGTCAGTGAGCATTAGCTAGATTGTTTGGCTCCTCCCACTTCTCAGTGAAGTAGATTCTTAAGTAGGCGGTTGTTGATGAGACCAATTAGACTGCAACCTAGCCTTTCACTTGTGTCCATTAGTTTGCGTCAAGTGCAATTTTGTTGATTTCATCTTTTACATCCATAATCACACAGAATAGTACACTTGGATTATGTCAAATTACATGTGAAATAGGCTTGGAAGAACTAATATGTATTAAGTTTGTAACTTGAAAGAGATAGGTAACTAACATGTAAGCAGGCTTAGTTATAGGTAATTGATAATATTGATCATTATAGATGCTCTTGCTAACTGAAACATCCTTCAGGGCGTGTAAAGCATATTTTCATGTATTTTTTGTTGGGTTCTGAAGAAAGTCTTCATTTTTTATGTAAGTTTGATGCAGCTGAGTAGAATCTATAGTGGTATTCTTGTTTCATCTGATGTATGTTTCTAAGCTTGTTCTGGAAGTGACATCAACCACTTATTAGCATCACCATTTACCTAGCACATTTTTGGTTCAAGTGATAGTCCAAAGGCTACTTGTAAAAGAAACTGATACTCTAAAGAGAACCAAATGTCCAACATATTTATCATATTACTTTTTTTTTTTTGCAATTTCTGTATGCGCGATTAATGAAAAAAGCTATTGTGATGTTGCATTACTACTGCTATATATTTTATTAATCCTCTTCCCCCACTAAAACCAAAAGAAAGACTGTTAGAAGTAGTGAATTCAGGCAATTCAAGACTAGTAAACAATGCTCTACTTACAATTTTTTCTTCTACTTTTCAGGTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATTATTGATTTTTTGTCCCCTTATCAGTAAAAGAAAACGTTACTTTGATACACTTTGGTTTGTTCATCTCTGGGGTCAAGTTTTTGCAAGGCATCAATTTCTCT</genome_strand>
        <mrna_strand>CTCCC................................................................................TATTTGAATAGCAGCAGAAGAGAAATCAAGAGCGTAAAGATGAGCCGAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATCGACTGTTCGAAGCCAGTGGAGGACAGTATTATGGAGATTGCTTCTCTTGACAAGTTCCTTCAAGAGAGAATTAAGGTTGGTGGAAAAGCTGGTGCACTTGGAGATTCCGTTACTGTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATTTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATTATTGATTTTTTGTCCCCTTATCAGTAAAAGAAAACGTTACTTTGATACACTTTGGTTTGTTCATCTCTGGGGTCAAGTTTTTGCAAGGCATCAATTTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E357774" ref_strand="+" ref_description="SGN-E357774 [cTOS-24-P6]">
      <seq>cctatttgaatagcagcagaagagaaatcaagagcgtaaagatgagccgagcagcagcagcagtgaagggcgggaagaagaagggggcaagcttcgtcatcgactgttcgaagccagtggaggacagtattatggagattgcttctcttgacaagttcctccaagagagaattaaggttggtggaaaagctggtgcacttggagattccgttactgtcactcgtgataagaataaaatcaccgtcacttgcaactccactttttccaagaggtacctcaaataccttgtcaaaaagtacttgaagaaaaacaacgttagggattggcttagggtgattgcttccaacaaggacaggaatgtttatgagttgcgctacttcaacattgccgagaatgaagcagatgaagaagattaaacatgtctagtcaatgtcccttttatcttcttattttgaaccttatatcatctgtttgagttattaatgagccgtatcttctcatttccagattaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="+" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="107860" stop="111001"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108078" g_stop="108079" g_length="2"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="2" r_length="2" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108080" i_stop="108159" i_length="80">
            <donor d_prob="0.876" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108160" g_stop="108428" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="3" r_stop="271" r_length="269" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108429" i_stop="110461" i_length="2033">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110462" g_stop="110700" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="510" r_length="239" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="+" ref_id="SGN-E357774" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357774" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108078" e_stop="108079"/>
          <exon e_start="108160" e_stop="108428"/>
          <exon e_start="110462" e_stop="110700"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTATGTATTTTCCAACTTTTTCTCCGGCGATGAACATGAGCTTTGTGTTTGAGATCTGACGATTTTTGTTTTGTTTTCAGTATTTGAATAGCAGCAGAAGAGAAATCAAGAGCGTAAAGATGAGCCGAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATCGACTGTTCGAAGCCAGTGGAGGACAGTATTATGGAGATTGCTTCTCTTGACAAGTTCCTCCAAGAGAGAATTAAGGTTGGTGGAAAAGCTGGTGCACTTGGAGATTCCGTTACTGTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAGGTACTGACTAGTACTATATTTCCACTCCTCATTTCGTGTAATTTGGGTTTTTGCCTGATTTTTAATTGGGTTTATTTGAAAAAATTGATCGTTGAAACTTCGTGTGGGTCGACTTTCATTGTAGTTTGATAATGTTTACACTGACAGATTGATAGGATTTTAGCGTAAACCTATTCTTTTATTCGGGATGTGCTATGCTCTGCAAGGAGTTGTTTTGTTTGGAATAGTGTAGTCATTCACGCATTGAGCTTTGAGTCAGTTGATAATGGGTTAAAATAGAGTTCTTTTTGCAGTTTATTTTAGTTATCAATAGTGATGATGATTGTGTGTTTGTGTTATGTCATTCTACTGCTTGTTTATTCAAAATATTATCCTATTTACATTGAGAAATAAGGAGAAATAGAAGAACTAAAACAGCAGCGTAATATCTTGTAGGTAACCATTTGTATCTTGAACTAGGTATCCTAATTATCCTTGTAGCTCTTGCTGAACTTATGGAACAGATAGTCTATGAGCTCTACACTTCAACGTCCAAGATTAGAAATCGGGGTTGGCTTTTATCGTACTTGGATTATTTTCACAACTGACAGATTGAAATTAACTTATCATAGCCTCTTTTATTGTGGCTTGTTTCTGCTTTACCAAGAGCTCTTATTTGGAATAGTGCATTCATTTATATTTTAAGCTCAGAGTAGATTAACAGTGGTTTTCAAAAGAGGTCCTTTTTGCTGTTTATTTTAGTTTGAGTGCCCTGCACTGCAAGTCTAATAAATAAGCCCTTCTATTCTGGAGTTATTACATTGAAGAGGATGAGCTTATGTCATTCTACTTTTCGTTCATCTAATGCATTATCTTACTTACATTGAGAAGCAAAGAAATAACAGAAAAATTATGGTGGCGTAGTATCTTGTAGTTATTCGTAAATCCAACTGTTTATCTTGTAATTATCCGTAAATCCAACTGTTGGTCTTCTCATATAGCAGGTTCAACCAGGCCCCAGTAACCACTGTTACATTTTTGGACTGTTGTCTGCTCTTTAGTTATTTAGTAAATTTTTATAAATTAGCAGACCCCTTCTTTTGCTTGCATCTTCTTGATGCCTTCTAATGAAATCTCTTTCATCTAAAAAAGATATTCATAACTTGAATAGGGTATGTGCATAATGTTATATAATTATAATAATCCTCACAGATCTTCCTGAATTTATGTTCAGATTGTCAGTGAGCATTAGCTAGATTGTTTGGCTCCTCCCACTTCTCAGTGAAGTAGATTCTTAAGTAGGCGGTTGTTGATGAGACCAATTAGACTGCAACCTAGCCTTTCACTTGTGTCCATTAGTTTGCGTCAAGTGCAATTTTGTTGATTTCATCTTTTACATCCATAATCACACAGAATAGTACACTTGGATTATGTCAAATTACATGTGAAATAGGCTTGGAAGAACTAATATGTATTAAGTTTGTAACTTGAAAGAGATAGGTAACTAACATGTAAGCAGGCTTAGTTATAGGTAATTGATAATATTGATCATTATAGATGCTCTTGCTAACTGAAACATCCTTCAGGGCGTGTAAAGCATATTTTCATGTATTTTTTGTTGGGTTCTGAAGAAAGTCTTCATTTTTTATGTAAGTTTGATGCAGCTGAGTAGAATCTATAGTGGTATTCTTGTTTCATCTGATGTATGTTTCTAAGCTTGTTCTGGAAGTGACATCAACCACTTATTAGCATCACCATTTACCTAGCACATTTTTGGTTCAAGTGATAGTCCAAAGGCTACTTGTAAAAGAAACTGATACTCTAAAGAGAACCAAATGTCCAACATATTTATCATATTACTTTTTTTTTTTTGCAATTTCTGTATGCGCGATTAATGAAAAAAGCTATTGTGATGTTGCATTACTACTGCTATATATTTTATTAATCCTCTTCCCCCACTAAAACCAAAAGAAAGACTGTTAGAAGTAGTGAATTCAGGCAATTCAAGACTAGTAAACAATGCTCTACTTACAATTTTTTCTTCTACTTTTCAGGTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATT</genome_strand>
        <mrna_strand>CC................................................................................TATTTGAATAGCAGCAGAAGAGAAATCAAGAGCGTAAAGATGAGCCGAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATCGACTGTTCGAAGCCAGTGGAGGACAGTATTATGGAGATTGCTTCTCTTGACAAGTTCCTCCAAGAGAGAATTAAGGTTGGTGGAAAAGCTGGTGCACTTGGAGATTCCGTTACTGTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E371903" ref_strand="+" ref_description="SGN-E371903 [TUS-30-I2](-)">
      <seq>tttgaatagcagcagaagagaaatcaagagcgtaaagatgagccgagcagcagcagcagtgaagggcgggaagaagaagggggcaagcttcgtcatcgactgttcgaagccagtggaggacagtattatggagattgcttctcttgacaagttcctccaagagagaattaaggttggtggaaaagctggtgcacttggagattccgttactgtcactcgtgataagaataaaatcaccgtcacttgcaactccactttttccaagaggtacctcaaataccttgtcaaaaagtacttgaagaaaaacaacgttagggattggcttagggtgattgcttccaacaaggacaggaatgtttatgagttgcgctacttcaacattgccgagaatgaagcagatgaagaagattaaacatgtctagtcaatgtcccttttatcttcttattttgaaccttatatcatctgtttgagttattaatgagccgtatcttctcatttccagattattgattttttgtccccttatcagtaaaagaaaacgttactttgatacactttggtttgttcatctctggggtcaagtttttgcaaggcatcaatttctctgtattgccttttccctcttgatgatcacatgtaatttatagagtttatcttttgttgttcttggaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="+" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="107862" stop="111164"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108162" g_stop="108428" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="267" r_length="267" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108429" i_stop="110461" i_length="2033">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110462" g_stop="110863" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="669" r_length="402" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="+" ref_id="SGN-E371903" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371903" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108162" e_stop="108428"/>
          <exon e_start="110462" e_stop="110863"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAATAGCAGCAGAAGAGAAATCAAGAGCGTAAAGATGAGCCGAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATCGACTGTTCGAAGCCAGTGGAGGACAGTATTATGGAGATTGCTTCTCTTGACAAGTTCCTCCAAGAGAGAATTAAGGTTGGTGGAAAAGCTGGTGCACTTGGAGATTCCGTTACTGTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAGGTACTGACTAGTACTATATTTCCACTCCTCATTTCGTGTAATTTGGGTTTTTGCCTGATTTTTAATTGGGTTTATTTGAAAAAATTGATCGTTGAAACTTCGTGTGGGTCGACTTTCATTGTAGTTTGATAATGTTTACACTGACAGATTGATAGGATTTTAGCGTAAACCTATTCTTTTATTCGGGATGTGCTATGCTCTGCAAGGAGTTGTTTTGTTTGGAATAGTGTAGTCATTCACGCATTGAGCTTTGAGTCAGTTGATAATGGGTTAAAATAGAGTTCTTTTTGCAGTTTATTTTAGTTATCAATAGTGATGATGATTGTGTGTTTGTGTTATGTCATTCTACTGCTTGTTTATTCAAAATATTATCCTATTTACATTGAGAAATAAGGAGAAATAGAAGAACTAAAACAGCAGCGTAATATCTTGTAGGTAACCATTTGTATCTTGAACTAGGTATCCTAATTATCCTTGTAGCTCTTGCTGAACTTATGGAACAGATAGTCTATGAGCTCTACACTTCAACGTCCAAGATTAGAAATCGGGGTTGGCTTTTATCGTACTTGGATTATTTTCACAACTGACAGATTGAAATTAACTTATCATAGCCTCTTTTATTGTGGCTTGTTTCTGCTTTACCAAGAGCTCTTATTTGGAATAGTGCATTCATTTATATTTTAAGCTCAGAGTAGATTAACAGTGGTTTTCAAAAGAGGTCCTTTTTGCTGTTTATTTTAGTTTGAGTGCCCTGCACTGCAAGTCTAATAAATAAGCCCTTCTATTCTGGAGTTATTACATTGAAGAGGATGAGCTTATGTCATTCTACTTTTCGTTCATCTAATGCATTATCTTACTTACATTGAGAAGCAAAGAAATAACAGAAAAATTATGGTGGCGTAGTATCTTGTAGTTATTCGTAAATCCAACTGTTTATCTTGTAATTATCCGTAAATCCAACTGTTGGTCTTCTCATATAGCAGGTTCAACCAGGCCCCAGTAACCACTGTTACATTTTTGGACTGTTGTCTGCTCTTTAGTTATTTAGTAAATTTTTATAAATTAGCAGACCCCTTCTTTTGCTTGCATCTTCTTGATGCCTTCTAATGAAATCTCTTTCATCTAAAAAAGATATTCATAACTTGAATAGGGTATGTGCATAATGTTATATAATTATAATAATCCTCACAGATCTTCCTGAATTTATGTTCAGATTGTCAGTGAGCATTAGCTAGATTGTTTGGCTCCTCCCACTTCTCAGTGAAGTAGATTCTTAAGTAGGCGGTTGTTGATGAGACCAATTAGACTGCAACCTAGCCTTTCACTTGTGTCCATTAGTTTGCGTCAAGTGCAATTTTGTTGATTTCATCTTTTACATCCATAATCACACAGAATAGTACACTTGGATTATGTCAAATTACATGTGAAATAGGCTTGGAAGAACTAATATGTATTAAGTTTGTAACTTGAAAGAGATAGGTAACTAACATGTAAGCAGGCTTAGTTATAGGTAATTGATAATATTGATCATTATAGATGCTCTTGCTAACTGAAACATCCTTCAGGGCGTGTAAAGCATATTTTCATGTATTTTTTGTTGGGTTCTGAAGAAAGTCTTCATTTTTTATGTAAGTTTGATGCAGCTGAGTAGAATCTATAGTGGTATTCTTGTTTCATCTGATGTATGTTTCTAAGCTTGTTCTGGAAGTGACATCAACCACTTATTAGCATCACCATTTACCTAGCACATTTTTGGTTCAAGTGATAGTCCAAAGGCTACTTGTAAAAGAAACTGATACTCTAAAGAGAACCAAATGTCCAACATATTTATCATATTACTTTTTTTTTTTTGCAATTTCTGTATGCGCGATTAATGAAAAAAGCTATTGTGATGTTGCATTACTACTGCTATATATTTTATTAATCCTCTTCCCCCACTAAAACCAAAAGAAAGACTGTTAGAAGTAGTGAATTCAGGCAATTCAAGACTAGTAAACAATGCTCTACTTACAATTTTTTCTTCTACTTTTCAGGTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATTATTGATTTTTTGTCCCCTTATCAGTAAAAGAAAACGTTACTTTGATACACTTTGGTTTGTTCATCTCTGGGGTCAAGTTTTTGCAAGGCATCAATTTCTCTGTATTGCCTTTTCCCTCTTGATGATCACATGTAATTTATAGAGTTTATCTTTTGTTGTTCTT</genome_strand>
        <mrna_strand>TTTGAATAGCAGCAGAAGAGAAATCAAGAGCGTAAAGATGAGCCGAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATCGACTGTTCGAAGCCAGTGGAGGACAGTATTATGGAGATTGCTTCTCTTGACAAGTTCCTCCAAGAGAGAATTAAGGTTGGTGGAAAAGCTGGTGCACTTGGAGATTCCGTTACTGTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATTATTGATTTTTTGTCCCCTTATCAGTAAAAGAAAACGTTACTTTGATACACTTTGGTTTGTTCATCTCTGGGGTCAAGTTTTTGCAAGGCATCAATTTCTCTGTATTGCCTTTTCCCTCTTGATGATCACATGTAATTTATAGAGTTTATCTTTTGTTGTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E285777" ref_strand="+" ref_description="SGN-E285777 [cLES-5-G16]">
      <seq>ttgaatagcagcagaagagaaatcaagagcgtaaagatgagccgagcagcagcagcagtgaagggcgggaagaagaagggggcaagcttcgtcatcgactgttcgaagccagtggaggacagtattatggagattgcttctcttgacaagttcctccaagagagaattaaggttggtggaaaagctggtgcacttggagattccgttactgtcactcgtgataagaataaaatcaccgtcacttgcaactccactttttccaagaggtacctcaaataccttgtcaaaaagtacttgaagaaaaacaacgttagggattggcttagggtgattgcttccaacaaggacaggaatgtttatgagttgcgctacttcaacattgccgagaatgaagcagatgaagaagattaaacatgtctagtcaatgtcccttttatcttcttattttgaaccttatatcatctgtttgagttattaatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="+" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="107863" stop="110977"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108163" g_stop="108428" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="266" r_length="266" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108429" i_stop="110461" i_length="2033">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110462" g_stop="110677" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="482" r_length="216" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="+" ref_id="SGN-E285777" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285777" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108163" e_stop="108428"/>
          <exon e_start="110462" e_stop="110677"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAATAGCAGCAGAAGAGAAATCAAGAGCGTAAAGATGAGCCGAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATCGACTGTTCGAAGCCAGTGGAGGACAGTATTATGGAGATTGCTTCTCTTGACAAGTTCCTCCAAGAGAGAATTAAGGTTGGTGGAAAAGCTGGTGCACTTGGAGATTCCGTTACTGTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAGGTACTGACTAGTACTATATTTCCACTCCTCATTTCGTGTAATTTGGGTTTTTGCCTGATTTTTAATTGGGTTTATTTGAAAAAATTGATCGTTGAAACTTCGTGTGGGTCGACTTTCATTGTAGTTTGATAATGTTTACACTGACAGATTGATAGGATTTTAGCGTAAACCTATTCTTTTATTCGGGATGTGCTATGCTCTGCAAGGAGTTGTTTTGTTTGGAATAGTGTAGTCATTCACGCATTGAGCTTTGAGTCAGTTGATAATGGGTTAAAATAGAGTTCTTTTTGCAGTTTATTTTAGTTATCAATAGTGATGATGATTGTGTGTTTGTGTTATGTCATTCTACTGCTTGTTTATTCAAAATATTATCCTATTTACATTGAGAAATAAGGAGAAATAGAAGAACTAAAACAGCAGCGTAATATCTTGTAGGTAACCATTTGTATCTTGAACTAGGTATCCTAATTATCCTTGTAGCTCTTGCTGAACTTATGGAACAGATAGTCTATGAGCTCTACACTTCAACGTCCAAGATTAGAAATCGGGGTTGGCTTTTATCGTACTTGGATTATTTTCACAACTGACAGATTGAAATTAACTTATCATAGCCTCTTTTATTGTGGCTTGTTTCTGCTTTACCAAGAGCTCTTATTTGGAATAGTGCATTCATTTATATTTTAAGCTCAGAGTAGATTAACAGTGGTTTTCAAAAGAGGTCCTTTTTGCTGTTTATTTTAGTTTGAGTGCCCTGCACTGCAAGTCTAATAAATAAGCCCTTCTATTCTGGAGTTATTACATTGAAGAGGATGAGCTTATGTCATTCTACTTTTCGTTCATCTAATGCATTATCTTACTTACATTGAGAAGCAAAGAAATAACAGAAAAATTATGGTGGCGTAGTATCTTGTAGTTATTCGTAAATCCAACTGTTTATCTTGTAATTATCCGTAAATCCAACTGTTGGTCTTCTCATATAGCAGGTTCAACCAGGCCCCAGTAACCACTGTTACATTTTTGGACTGTTGTCTGCTCTTTAGTTATTTAGTAAATTTTTATAAATTAGCAGACCCCTTCTTTTGCTTGCATCTTCTTGATGCCTTCTAATGAAATCTCTTTCATCTAAAAAAGATATTCATAACTTGAATAGGGTATGTGCATAATGTTATATAATTATAATAATCCTCACAGATCTTCCTGAATTTATGTTCAGATTGTCAGTGAGCATTAGCTAGATTGTTTGGCTCCTCCCACTTCTCAGTGAAGTAGATTCTTAAGTAGGCGGTTGTTGATGAGACCAATTAGACTGCAACCTAGCCTTTCACTTGTGTCCATTAGTTTGCGTCAAGTGCAATTTTGTTGATTTCATCTTTTACATCCATAATCACACAGAATAGTACACTTGGATTATGTCAAATTACATGTGAAATAGGCTTGGAAGAACTAATATGTATTAAGTTTGTAACTTGAAAGAGATAGGTAACTAACATGTAAGCAGGCTTAGTTATAGGTAATTGATAATATTGATCATTATAGATGCTCTTGCTAACTGAAACATCCTTCAGGGCGTGTAAAGCATATTTTCATGTATTTTTTGTTGGGTTCTGAAGAAAGTCTTCATTTTTTATGTAAGTTTGATGCAGCTGAGTAGAATCTATAGTGGTATTCTTGTTTCATCTGATGTATGTTTCTAAGCTTGTTCTGGAAGTGACATCAACCACTTATTAGCATCACCATTTACCTAGCACATTTTTGGTTCAAGTGATAGTCCAAAGGCTACTTGTAAAAGAAACTGATACTCTAAAGAGAACCAAATGTCCAACATATTTATCATATTACTTTTTTTTTTTTGCAATTTCTGTATGCGCGATTAATGAAAAAAGCTATTGTGATGTTGCATTACTACTGCTATATATTTTATTAATCCTCTTCCCCCACTAAAACCAAAAGAAAGACTGTTAGAAGTAGTGAATTCAGGCAATTCAAGACTAGTAAACAATGCTCTACTTACAATTTTTTCTTCTACTTTTCAGGTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAG</genome_strand>
        <mrna_strand>TTGAATAGCAGCAGAAGAGAAATCAAGAGCGTAAAGATGAGCCGAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATCGACTGTTCGAAGCCAGTGGAGGACAGTATTATGGAGATTGCTTCTCTTGACAAGTTCCTCCAAGAGAGAATTAAGGTTGGTGGAAAAGCTGGTGCACTTGGAGATTCCGTTACTGTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E715201" ref_strand="+" ref_description="SGN-E715201 [FB13CE07]">
      <seq>gtaaagatgagccgagcagcagcagcagtgaagggcgggaagaagaagggggcaagcttcgtcatcgactgttcgaagccagtggaggacagtattatggagattgcttctcttgacaagttccttcaagagagaattaaggttggtggaaaagctggtgcacttggagattccgttactgtcactcgtgataagaataaaatcaccgtcacttgcaactccactttttccaagaggtacctcaaataccttgtcaaaaagtacttgaagaaaaacaacgttagggattggcttagggtgattgcttccaacaaggacaggaatgtttatgagttgcgctacttcaacattgccgagaatgaagcagatgaagaagattaaacatttctagtcaatgtcccttttatcttcttattttgaaccttatatcatctgtttgagttattaatgagccgtatcttctcatttccagattattgattttttgtccccttatcagtaaaagaaaacgttactttgatacactttggtttgttcatctctggggtcaagtttttgcaaggcatcaatttctctgtattgccttttccctcttgatgatcacatgtaatttattgagtttatcttttgttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="+" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="107893" stop="111159"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108193" g_stop="108428" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108429" i_stop="110461" i_length="2033">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110462" g_stop="110859" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="634" r_length="398" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="+" ref_id="SGN-E715201" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715201" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108193" e_stop="108428"/>
          <exon e_start="110462" e_stop="110859"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAAGATGAGCCGAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATCGACTGTTCGAAGCCAGTGGAGGACAGTATTATGGAGATTGCTTCTCTTGACAAGTTCCTCCAAGAGAGAATTAAGGTTGGTGGAAAAGCTGGTGCACTTGGAGATTCCGTTACTGTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAGGTACTGACTAGTACTATATTTCCACTCCTCATTTCGTGTAATTTGGGTTTTTGCCTGATTTTTAATTGGGTTTATTTGAAAAAATTGATCGTTGAAACTTCGTGTGGGTCGACTTTCATTGTAGTTTGATAATGTTTACACTGACAGATTGATAGGATTTTAGCGTAAACCTATTCTTTTATTCGGGATGTGCTATGCTCTGCAAGGAGTTGTTTTGTTTGGAATAGTGTAGTCATTCACGCATTGAGCTTTGAGTCAGTTGATAATGGGTTAAAATAGAGTTCTTTTTGCAGTTTATTTTAGTTATCAATAGTGATGATGATTGTGTGTTTGTGTTATGTCATTCTACTGCTTGTTTATTCAAAATATTATCCTATTTACATTGAGAAATAAGGAGAAATAGAAGAACTAAAACAGCAGCGTAATATCTTGTAGGTAACCATTTGTATCTTGAACTAGGTATCCTAATTATCCTTGTAGCTCTTGCTGAACTTATGGAACAGATAGTCTATGAGCTCTACACTTCAACGTCCAAGATTAGAAATCGGGGTTGGCTTTTATCGTACTTGGATTATTTTCACAACTGACAGATTGAAATTAACTTATCATAGCCTCTTTTATTGTGGCTTGTTTCTGCTTTACCAAGAGCTCTTATTTGGAATAGTGCATTCATTTATATTTTAAGCTCAGAGTAGATTAACAGTGGTTTTCAAAAGAGGTCCTTTTTGCTGTTTATTTTAGTTTGAGTGCCCTGCACTGCAAGTCTAATAAATAAGCCCTTCTATTCTGGAGTTATTACATTGAAGAGGATGAGCTTATGTCATTCTACTTTTCGTTCATCTAATGCATTATCTTACTTACATTGAGAAGCAAAGAAATAACAGAAAAATTATGGTGGCGTAGTATCTTGTAGTTATTCGTAAATCCAACTGTTTATCTTGTAATTATCCGTAAATCCAACTGTTGGTCTTCTCATATAGCAGGTTCAACCAGGCCCCAGTAACCACTGTTACATTTTTGGACTGTTGTCTGCTCTTTAGTTATTTAGTAAATTTTTATAAATTAGCAGACCCCTTCTTTTGCTTGCATCTTCTTGATGCCTTCTAATGAAATCTCTTTCATCTAAAAAAGATATTCATAACTTGAATAGGGTATGTGCATAATGTTATATAATTATAATAATCCTCACAGATCTTCCTGAATTTATGTTCAGATTGTCAGTGAGCATTAGCTAGATTGTTTGGCTCCTCCCACTTCTCAGTGAAGTAGATTCTTAAGTAGGCGGTTGTTGATGAGACCAATTAGACTGCAACCTAGCCTTTCACTTGTGTCCATTAGTTTGCGTCAAGTGCAATTTTGTTGATTTCATCTTTTACATCCATAATCACACAGAATAGTACACTTGGATTATGTCAAATTACATGTGAAATAGGCTTGGAAGAACTAATATGTATTAAGTTTGTAACTTGAAAGAGATAGGTAACTAACATGTAAGCAGGCTTAGTTATAGGTAATTGATAATATTGATCATTATAGATGCTCTTGCTAACTGAAACATCCTTCAGGGCGTGTAAAGCATATTTTCATGTATTTTTTGTTGGGTTCTGAAGAAAGTCTTCATTTTTTATGTAAGTTTGATGCAGCTGAGTAGAATCTATAGTGGTATTCTTGTTTCATCTGATGTATGTTTCTAAGCTTGTTCTGGAAGTGACATCAACCACTTATTAGCATCACCATTTACCTAGCACATTTTTGGTTCAAGTGATAGTCCAAAGGCTACTTGTAAAAGAAACTGATACTCTAAAGAGAACCAAATGTCCAACATATTTATCATATTACTTTTTTTTTTTTGCAATTTCTGTATGCGCGATTAATGAAAAAAGCTATTGTGATGTTGCATTACTACTGCTATATATTTTATTAATCCTCTTCCCCCACTAAAACCAAAAGAAAGACTGTTAGAAGTAGTGAATTCAGGCAATTCAAGACTAGTAAACAATGCTCTACTTACAATTTTTTCTTCTACTTTTCAGGTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATTATTGATTTTTTGTCCCCTTATCAGTAAAAGAAAACGTTACTTTGATACACTTTGGTTTGTTCATCTCTGGGGTCAAGTTTTTGCAAGGCATCAATTTCTCTGTATTGCCTTTTCCCTCTTGATGATCACATGTAATTTATAGAGTTTATCTTTTGTTGT</genome_strand>
        <mrna_strand>GTAAAGATGAGCCGAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATCGACTGTTCGAAGCCAGTGGAGGACAGTATTATGGAGATTGCTTCTCTTGACAAGTTCCTTCAAGAGAGAATTAAGGTTGGTGGAAAAGCTGGTGCACTTGGAGATTCCGTTACTGTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATTTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATTATTGATTTTTTGTCCCCTTATCAGTAAAAGAAAACGTTACTTTGATACACTTTGGTTTGTTCATCTCTGGGGTCAAGTTTTTGCAAGGCATCAATTTCTCTGTATTGCCTTTTCCCTCTTGATGATCACATGTAATTTATTGAGTTTATCTTTTGTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E335016" ref_strand="+" ref_description="SGN-E335016 [cTOE-9-G9]">
      <seq>gcccgagcagcagcagcagtgaagggcgggaagacagaagggggcaagcttcgtcatcgactgttcgaagccagtggaggaccagtattatggagattgcttctcttgacaagttcctccaagagagaattaagggttggtggaaaagctggtgccacttggagacttccgttactgtcactcgtgataagaataaaatcaccgtcacttgcaactccactttttccaagaggtacctcaaatacccttgtcaaaaagtaccttgaagaaaaacaacgttagggattggcttagggtgattgcttccaacaaggacaggaatgtttatgagttgcgctacttcaacattgccgagaatgaagcagatgaagaagattaaacatgtctagtcaatgtcccttttatcttcttattttgaaccttatatcatctgtttgagttattaatgagccgtatcttctcatttccagattattgatntttttgtccccttatcagtaaaagaaaacgttacctttgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="+" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="107904" stop="111049"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108202" g_stop="108428" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108429" i_stop="110461" i_length="2033">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110462" g_stop="110744" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="518" r_length="286" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="520" polyA_stop="529"/>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="+" ref_id="SGN-E335016" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335016" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108202" e_stop="108428"/>
          <exon e_start="110462" e_stop="110744"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCGAGCAGCAGCAGCAGTGAAGGGCGGGAAGA-AGAAGGGGGCAAGCTTCGTCATCGACTGTTCGAAGCCAGTGGAGGAC-AGTATTATGGAGATTGCTTCTCTTGACAAGTTCCTCCAAGAGAGAATTAA-GGTTGGTGGAAAAGCTGGTG-CACTTGGAGA-TTCCGTTACTGTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAGGTACTGACTAGTACTATATTTCCACTCCTCATTTCGTGTAATTTGGGTTTTTGCCTGATTTTTAATTGGGTTTATTTGAAAAAATTGATCGTTGAAACTTCGTGTGGGTCGACTTTCATTGTAGTTTGATAATGTTTACACTGACAGATTGATAGGATTTTAGCGTAAACCTATTCTTTTATTCGGGATGTGCTATGCTCTGCAAGGAGTTGTTTTGTTTGGAATAGTGTAGTCATTCACGCATTGAGCTTTGAGTCAGTTGATAATGGGTTAAAATAGAGTTCTTTTTGCAGTTTATTTTAGTTATCAATAGTGATGATGATTGTGTGTTTGTGTTATGTCATTCTACTGCTTGTTTATTCAAAATATTATCCTATTTACATTGAGAAATAAGGAGAAATAGAAGAACTAAAACAGCAGCGTAATATCTTGTAGGTAACCATTTGTATCTTGAACTAGGTATCCTAATTATCCTTGTAGCTCTTGCTGAACTTATGGAACAGATAGTCTATGAGCTCTACACTTCAACGTCCAAGATTAGAAATCGGGGTTGGCTTTTATCGTACTTGGATTATTTTCACAACTGACAGATTGAAATTAACTTATCATAGCCTCTTTTATTGTGGCTTGTTTCTGCTTTACCAAGAGCTCTTATTTGGAATAGTGCATTCATTTATATTTTAAGCTCAGAGTAGATTAACAGTGGTTTTCAAAAGAGGTCCTTTTTGCTGTTTATTTTAGTTTGAGTGCCCTGCACTGCAAGTCTAATAAATAAGCCCTTCTATTCTGGAGTTATTACATTGAAGAGGATGAGCTTATGTCATTCTACTTTTCGTTCATCTAATGCATTATCTTACTTACATTGAGAAGCAAAGAAATAACAGAAAAATTATGGTGGCGTAGTATCTTGTAGTTATTCGTAAATCCAACTGTTTATCTTGTAATTATCCGTAAATCCAACTGTTGGTCTTCTCATATAGCAGGTTCAACCAGGCCCCAGTAACCACTGTTACATTTTTGGACTGTTGTCTGCTCTTTAGTTATTTAGTAAATTTTTATAAATTAGCAGACCCCTTCTTTTGCTTGCATCTTCTTGATGCCTTCTAATGAAATCTCTTTCATCTAAAAAAGATATTCATAACTTGAATAGGGTATGTGCATAATGTTATATAATTATAATAATCCTCACAGATCTTCCTGAATTTATGTTCAGATTGTCAGTGAGCATTAGCTAGATTGTTTGGCTCCTCCCACTTCTCAGTGAAGTAGATTCTTAAGTAGGCGGTTGTTGATGAGACCAATTAGACTGCAACCTAGCCTTTCACTTGTGTCCATTAGTTTGCGTCAAGTGCAATTTTGTTGATTTCATCTTTTACATCCATAATCACACAGAATAGTACACTTGGATTATGTCAAATTACATGTGAAATAGGCTTGGAAGAACTAATATGTATTAAGTTTGTAACTTGAAAGAGATAGGTAACTAACATGTAAGCAGGCTTAGTTATAGGTAATTGATAATATTGATCATTATAGATGCTCTTGCTAACTGAAACATCCTTCAGGGCGTGTAAAGCATATTTTCATGTATTTTTTGTTGGGTTCTGAAGAAAGTCTTCATTTTTTATGTAAGTTTGATGCAGCTGAGTAGAATCTATAGTGGTATTCTTGTTTCATCTGATGTATGTTTCTAAGCTTGTTCTGGAAGTGACATCAACCACTTATTAGCATCACCATTTACCTAGCACATTTTTGGTTCAAGTGATAGTCCAAAGGCTACTTGTAAAAGAAACTGATACTCTAAAGAGAACCAAATGTCCAACATATTTATCATATTACTTTTTTTTTTTTGCAATTTCTGTATGCGCGATTAATGAAAAAAGCTATTGTGATGTTGCATTACTACTGCTATATATTTTATTAATCCTCTTCCCCCACTAAAACCAAAAGAAAGACTGTTAGAAGTAGTGAATTCAGGCAATTCAAGACTAGTAAACAATGCTCTACTTACAATTTTTTCTTCTACTTTTCAGGTACCTCAAATA-CCTTGTCAAAAAGTA-CTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATTATTGAT-TTTTTGTCCCCTTATCAGTAAAAGAAAACGTTACTTTG</genome_strand>
        <mrna_strand>GCCCGAGCAGCAGCAGCAGTGAAGGGCGGGAAGACAGAAGGGGGCAAGCTTCGTCATCGACTGTTCGAAGCCAGTGGAGGACCAGTATTATGGAGATTGCTTCTCTTGACAAGTTCCTCCAAGAGAGAATTAAGGGTTGGTGGAAAAGCTGGTGCCACTTGGAGACTTCCGTTACTGTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTCAAATACCCTTGTCAAAAAGTACCTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATTATTGATNTTTTTGTCCCCTTATCAGTAAAAGAAAACGTTACCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E284720" ref_strand="-" ref_description="SGN-E284720 [cLES-3-J16]">
      <seq>aagggggcaagcttcgtcatcgactgttcgaagccagtgaaggacagtattatggagattgcttctcttgacaagttcctccaagagagaattagggttggtgaaaaagctggtgcacttggagattccgttactgtcactcgtgataagaataaaatcaccgtcacttgcaactccactttttccaagaggtacctcaaataccttgtcaaaaagtacttgaagaaaaacaacgttagggattggcttagggtgattgcttccaacaaggacaggaatgtttatgagttgcgctacttcaacattgccgagaatgaagcagatgaagaagattaaacatgtctagtcaatgtcccttttatcttcttattttgaaccttatatcatctgtttgagttattaatgagccgtatcttctcatttccagattattgattttttgtccccttatcagtaaaagaaaccgttactttgataaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="+" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="107938" stop="111049"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108238" g_stop="108428" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108429" i_stop="110461" i_length="2033">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110462" g_stop="110744" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="474" r_length="283" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="475" polyA_stop="494"/>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="+" ref_id="SGN-E284720" ref_strand="-">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284720" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="108238" e_stop="108428"/>
          <exon e_start="110462" e_stop="110744"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGGGGCAAGCTTCGTCATCGACTGTTCGAAGCCAGTGGAGGACAGTATTATGGAGATTGCTTCTCTTGACAAGTTCCTCCAAGAGAGAATTAAGGTTGGTGGAAAAGCTGGTGCACTTGGAGATTCCGTTACTGTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAGGTACTGACTAGTACTATATTTCCACTCCTCATTTCGTGTAATTTGGGTTTTTGCCTGATTTTTAATTGGGTTTATTTGAAAAAATTGATCGTTGAAACTTCGTGTGGGTCGACTTTCATTGTAGTTTGATAATGTTTACACTGACAGATTGATAGGATTTTAGCGTAAACCTATTCTTTTATTCGGGATGTGCTATGCTCTGCAAGGAGTTGTTTTGTTTGGAATAGTGTAGTCATTCACGCATTGAGCTTTGAGTCAGTTGATAATGGGTTAAAATAGAGTTCTTTTTGCAGTTTATTTTAGTTATCAATAGTGATGATGATTGTGTGTTTGTGTTATGTCATTCTACTGCTTGTTTATTCAAAATATTATCCTATTTACATTGAGAAATAAGGAGAAATAGAAGAACTAAAACAGCAGCGTAATATCTTGTAGGTAACCATTTGTATCTTGAACTAGGTATCCTAATTATCCTTGTAGCTCTTGCTGAACTTATGGAACAGATAGTCTATGAGCTCTACACTTCAACGTCCAAGATTAGAAATCGGGGTTGGCTTTTATCGTACTTGGATTATTTTCACAACTGACAGATTGAAATTAACTTATCATAGCCTCTTTTATTGTGGCTTGTTTCTGCTTTACCAAGAGCTCTTATTTGGAATAGTGCATTCATTTATATTTTAAGCTCAGAGTAGATTAACAGTGGTTTTCAAAAGAGGTCCTTTTTGCTGTTTATTTTAGTTTGAGTGCCCTGCACTGCAAGTCTAATAAATAAGCCCTTCTATTCTGGAGTTATTACATTGAAGAGGATGAGCTTATGTCATTCTACTTTTCGTTCATCTAATGCATTATCTTACTTACATTGAGAAGCAAAGAAATAACAGAAAAATTATGGTGGCGTAGTATCTTGTAGTTATTCGTAAATCCAACTGTTTATCTTGTAATTATCCGTAAATCCAACTGTTGGTCTTCTCATATAGCAGGTTCAACCAGGCCCCAGTAACCACTGTTACATTTTTGGACTGTTGTCTGCTCTTTAGTTATTTAGTAAATTTTTATAAATTAGCAGACCCCTTCTTTTGCTTGCATCTTCTTGATGCCTTCTAATGAAATCTCTTTCATCTAAAAAAGATATTCATAACTTGAATAGGGTATGTGCATAATGTTATATAATTATAATAATCCTCACAGATCTTCCTGAATTTATGTTCAGATTGTCAGTGAGCATTAGCTAGATTGTTTGGCTCCTCCCACTTCTCAGTGAAGTAGATTCTTAAGTAGGCGGTTGTTGATGAGACCAATTAGACTGCAACCTAGCCTTTCACTTGTGTCCATTAGTTTGCGTCAAGTGCAATTTTGTTGATTTCATCTTTTACATCCATAATCACACAGAATAGTACACTTGGATTATGTCAAATTACATGTGAAATAGGCTTGGAAGAACTAATATGTATTAAGTTTGTAACTTGAAAGAGATAGGTAACTAACATGTAAGCAGGCTTAGTTATAGGTAATTGATAATATTGATCATTATAGATGCTCTTGCTAACTGAAACATCCTTCAGGGCGTGTAAAGCATATTTTCATGTATTTTTTGTTGGGTTCTGAAGAAAGTCTTCATTTTTTATGTAAGTTTGATGCAGCTGAGTAGAATCTATAGTGGTATTCTTGTTTCATCTGATGTATGTTTCTAAGCTTGTTCTGGAAGTGACATCAACCACTTATTAGCATCACCATTTACCTAGCACATTTTTGGTTCAAGTGATAGTCCAAAGGCTACTTGTAAAAGAAACTGATACTCTAAAGAGAACCAAATGTCCAACATATTTATCATATTACTTTTTTTTTTTTGCAATTTCTGTATGCGCGATTAATGAAAAAAGCTATTGTGATGTTGCATTACTACTGCTATATATTTTATTAATCCTCTTCCCCCACTAAAACCAAAAGAAAGACTGTTAGAAGTAGTGAATTCAGGCAATTCAAGACTAGTAAACAATGCTCTACTTACAATTTTTTCTTCTACTTTTCAGGTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATTATTGATTTTTTGTCCCCTTATCAGTAAAAGAAAACGTTACTTTG</genome_strand>
        <mrna_strand>AAGGGGGCAAGCTTCGTCATCGACTGTTCGAAGCCAGTGAAGGACAGTATTATGGAGATTGCTTCTCTTGACAAGTTCCTCCAAGAGAGAATTAGGGTTGGTGAAAAAGCTGGTGCACTTGGAGATTCCGTTACTGTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATTATTGATTTTTTGTCCCCTTATCAGTAAAAGAAACCGTTACTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E551726" ref_strand="+" ref_description="SGN-E551726 [cTSB-1-K16]">
      <seq>tgcttctcttgacaagttcctccaagagagaattaaggttggtggaaaagctggtgcacttggagattccgttactgtcactcgtgataagaataaaatcaccgtcacttgcaactccactttttccaagaggtacctcaaataccttgtcaaaaagtacttgaagaaaaacaacgttagggattggcttagggtgattgcttccaacaaggacaggaatgtttatgagttgcgctacttcaacattgccgagaatgaagcagatgaagaagattaaacatgtctagtcaatgtcccttttatcttcttattttgaaccttatatcatctgtttgagttattaatgagccgtatcttctcatttccagattattgattttttgtccccttatcagtaaaagaaaacgttactttgatacactttggtttgttcatctctggggtcaagtttttgcaaggcatcaatttctctgtattgccttttccctcttgatgatcacatgtaatttatagagtttatcttttgttgttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="+" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="107997" stop="111160"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108297" g_stop="108428" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108429" i_stop="110461" i_length="2033">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110462" g_stop="110857" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="528" r_length="396" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="532" polyA_stop="542"/>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="+" ref_id="SGN-E551726" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E551726" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108297" e_stop="108428"/>
          <exon e_start="110462" e_stop="110857"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTTCTCTTGACAAGTTCCTCCAAGAGAGAATTAAGGTTGGTGGAAAAGCTGGTGCACTTGGAGATTCCGTTACTGTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAGGTACTGACTAGTACTATATTTCCACTCCTCATTTCGTGTAATTTGGGTTTTTGCCTGATTTTTAATTGGGTTTATTTGAAAAAATTGATCGTTGAAACTTCGTGTGGGTCGACTTTCATTGTAGTTTGATAATGTTTACACTGACAGATTGATAGGATTTTAGCGTAAACCTATTCTTTTATTCGGGATGTGCTATGCTCTGCAAGGAGTTGTTTTGTTTGGAATAGTGTAGTCATTCACGCATTGAGCTTTGAGTCAGTTGATAATGGGTTAAAATAGAGTTCTTTTTGCAGTTTATTTTAGTTATCAATAGTGATGATGATTGTGTGTTTGTGTTATGTCATTCTACTGCTTGTTTATTCAAAATATTATCCTATTTACATTGAGAAATAAGGAGAAATAGAAGAACTAAAACAGCAGCGTAATATCTTGTAGGTAACCATTTGTATCTTGAACTAGGTATCCTAATTATCCTTGTAGCTCTTGCTGAACTTATGGAACAGATAGTCTATGAGCTCTACACTTCAACGTCCAAGATTAGAAATCGGGGTTGGCTTTTATCGTACTTGGATTATTTTCACAACTGACAGATTGAAATTAACTTATCATAGCCTCTTTTATTGTGGCTTGTTTCTGCTTTACCAAGAGCTCTTATTTGGAATAGTGCATTCATTTATATTTTAAGCTCAGAGTAGATTAACAGTGGTTTTCAAAAGAGGTCCTTTTTGCTGTTTATTTTAGTTTGAGTGCCCTGCACTGCAAGTCTAATAAATAAGCCCTTCTATTCTGGAGTTATTACATTGAAGAGGATGAGCTTATGTCATTCTACTTTTCGTTCATCTAATGCATTATCTTACTTACATTGAGAAGCAAAGAAATAACAGAAAAATTATGGTGGCGTAGTATCTTGTAGTTATTCGTAAATCCAACTGTTTATCTTGTAATTATCCGTAAATCCAACTGTTGGTCTTCTCATATAGCAGGTTCAACCAGGCCCCAGTAACCACTGTTACATTTTTGGACTGTTGTCTGCTCTTTAGTTATTTAGTAAATTTTTATAAATTAGCAGACCCCTTCTTTTGCTTGCATCTTCTTGATGCCTTCTAATGAAATCTCTTTCATCTAAAAAAGATATTCATAACTTGAATAGGGTATGTGCATAATGTTATATAATTATAATAATCCTCACAGATCTTCCTGAATTTATGTTCAGATTGTCAGTGAGCATTAGCTAGATTGTTTGGCTCCTCCCACTTCTCAGTGAAGTAGATTCTTAAGTAGGCGGTTGTTGATGAGACCAATTAGACTGCAACCTAGCCTTTCACTTGTGTCCATTAGTTTGCGTCAAGTGCAATTTTGTTGATTTCATCTTTTACATCCATAATCACACAGAATAGTACACTTGGATTATGTCAAATTACATGTGAAATAGGCTTGGAAGAACTAATATGTATTAAGTTTGTAACTTGAAAGAGATAGGTAACTAACATGTAAGCAGGCTTAGTTATAGGTAATTGATAATATTGATCATTATAGATGCTCTTGCTAACTGAAACATCCTTCAGGGCGTGTAAAGCATATTTTCATGTATTTTTTGTTGGGTTCTGAAGAAAGTCTTCATTTTTTATGTAAGTTTGATGCAGCTGAGTAGAATCTATAGTGGTATTCTTGTTTCATCTGATGTATGTTTCTAAGCTTGTTCTGGAAGTGACATCAACCACTTATTAGCATCACCATTTACCTAGCACATTTTTGGTTCAAGTGATAGTCCAAAGGCTACTTGTAAAAGAAACTGATACTCTAAAGAGAACCAAATGTCCAACATATTTATCATATTACTTTTTTTTTTTTGCAATTTCTGTATGCGCGATTAATGAAAAAAGCTATTGTGATGTTGCATTACTACTGCTATATATTTTATTAATCCTCTTCCCCCACTAAAACCAAAAGAAAGACTGTTAGAAGTAGTGAATTCAGGCAATTCAAGACTAGTAAACAATGCTCTACTTACAATTTTTTCTTCTACTTTTCAGGTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATTATTGATTTTTTGTCCCCTTATCAGTAAAAGAAAACGTTACTTTGATACACTTTGGTTTGTTCATCTCTGGGGTCAAGTTTTTGCAAGGCATCAATTTCTCTGTATTGCCTTTTCCCTCTTGATGATCACATGTAATTTATAGAGTTTATCTTTTGTT</genome_strand>
        <mrna_strand>TGCTTCTCTTGACAAGTTCCTCCAAGAGAGAATTAAGGTTGGTGGAAAAGCTGGTGCACTTGGAGATTCCGTTACTGTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATTATTGATTTTTTGTCCCCTTATCAGTAAAAGAAAACGTTACTTTGATACACTTTGGTTTGTTCATCTCTGGGGTCAAGTTTTTGCAAGGCATCAATTTCTCTGTATTGCCTTTTCCCTCTTGATGATCACATGTAATTTATAGAGTTTATCTTTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E219375" ref_strand="+" ref_description="SGN-E219375 [cLEL-11-F23](-)">
      <seq>ccgttactgtcactcgtgataagaataaaatcaaccgtcacttgcaactccactttttccaagaggtacctcaaataccttgtcaaaaagtacttgaagaaaaacaacgttagggattggcttagggtgattgcttccaacaaggacaggaatgtttatgagttgcgctacttcaacattgccgagaatgaagcagatgaagaagattaaacatgtctagtcaatgtcccttttatcttcttattttgaaccttatatcatctgtttgagttattaatgagccgtatcttctcatttccagattattgattttttgtccccttatcagtaaaagaaaacgttactttgatacactttggtttgttaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="+" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="108065" stop="111063"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108365" g_stop="108428" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108429" i_stop="110461" i_length="2033">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110462" g_stop="110758" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="362" r_length="297" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="366" polyA_stop="388"/>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="+" ref_id="SGN-E219375" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>361</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E219375" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108365" e_stop="108428"/>
          <exon e_start="110462" e_stop="110758"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTTACTGTCACTCGTGATAAGAATAAAATC-ACCGTCACTTGCAACTCCACTTTTTCCAAGAGGTACTGACTAGTACTATATTTCCACTCCTCATTTCGTGTAATTTGGGTTTTTGCCTGATTTTTAATTGGGTTTATTTGAAAAAATTGATCGTTGAAACTTCGTGTGGGTCGACTTTCATTGTAGTTTGATAATGTTTACACTGACAGATTGATAGGATTTTAGCGTAAACCTATTCTTTTATTCGGGATGTGCTATGCTCTGCAAGGAGTTGTTTTGTTTGGAATAGTGTAGTCATTCACGCATTGAGCTTTGAGTCAGTTGATAATGGGTTAAAATAGAGTTCTTTTTGCAGTTTATTTTAGTTATCAATAGTGATGATGATTGTGTGTTTGTGTTATGTCATTCTACTGCTTGTTTATTCAAAATATTATCCTATTTACATTGAGAAATAAGGAGAAATAGAAGAACTAAAACAGCAGCGTAATATCTTGTAGGTAACCATTTGTATCTTGAACTAGGTATCCTAATTATCCTTGTAGCTCTTGCTGAACTTATGGAACAGATAGTCTATGAGCTCTACACTTCAACGTCCAAGATTAGAAATCGGGGTTGGCTTTTATCGTACTTGGATTATTTTCACAACTGACAGATTGAAATTAACTTATCATAGCCTCTTTTATTGTGGCTTGTTTCTGCTTTACCAAGAGCTCTTATTTGGAATAGTGCATTCATTTATATTTTAAGCTCAGAGTAGATTAACAGTGGTTTTCAAAAGAGGTCCTTTTTGCTGTTTATTTTAGTTTGAGTGCCCTGCACTGCAAGTCTAATAAATAAGCCCTTCTATTCTGGAGTTATTACATTGAAGAGGATGAGCTTATGTCATTCTACTTTTCGTTCATCTAATGCATTATCTTACTTACATTGAGAAGCAAAGAAATAACAGAAAAATTATGGTGGCGTAGTATCTTGTAGTTATTCGTAAATCCAACTGTTTATCTTGTAATTATCCGTAAATCCAACTGTTGGTCTTCTCATATAGCAGGTTCAACCAGGCCCCAGTAACCACTGTTACATTTTTGGACTGTTGTCTGCTCTTTAGTTATTTAGTAAATTTTTATAAATTAGCAGACCCCTTCTTTTGCTTGCATCTTCTTGATGCCTTCTAATGAAATCTCTTTCATCTAAAAAAGATATTCATAACTTGAATAGGGTATGTGCATAATGTTATATAATTATAATAATCCTCACAGATCTTCCTGAATTTATGTTCAGATTGTCAGTGAGCATTAGCTAGATTGTTTGGCTCCTCCCACTTCTCAGTGAAGTAGATTCTTAAGTAGGCGGTTGTTGATGAGACCAATTAGACTGCAACCTAGCCTTTCACTTGTGTCCATTAGTTTGCGTCAAGTGCAATTTTGTTGATTTCATCTTTTACATCCATAATCACACAGAATAGTACACTTGGATTATGTCAAATTACATGTGAAATAGGCTTGGAAGAACTAATATGTATTAAGTTTGTAACTTGAAAGAGATAGGTAACTAACATGTAAGCAGGCTTAGTTATAGGTAATTGATAATATTGATCATTATAGATGCTCTTGCTAACTGAAACATCCTTCAGGGCGTGTAAAGCATATTTTCATGTATTTTTTGTTGGGTTCTGAAGAAAGTCTTCATTTTTTATGTAAGTTTGATGCAGCTGAGTAGAATCTATAGTGGTATTCTTGTTTCATCTGATGTATGTTTCTAAGCTTGTTCTGGAAGTGACATCAACCACTTATTAGCATCACCATTTACCTAGCACATTTTTGGTTCAAGTGATAGTCCAAAGGCTACTTGTAAAAGAAACTGATACTCTAAAGAGAACCAAATGTCCAACATATTTATCATATTACTTTTTTTTTTTTGCAATTTCTGTATGCGCGATTAATGAAAAAAGCTATTGTGATGTTGCATTACTACTGCTATATATTTTATTAATCCTCTTCCCCCACTAAAACCAAAAGAAAGACTGTTAGAAGTAGTGAATTCAGGCAATTCAAGACTAGTAAACAATGCTCTACTTACAATTTTTTCTTCTACTTTTCAGGTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATTATTGATTTTTTGTCCCCTTATCAGTAAAAGAAAACGTTACTTTGATACACTTTGGTTT</genome_strand>
        <mrna_strand>CCGTTACTGTCACTCGTGATAAGAATAAAATCAACCGTCACTTGCAACTCCACTTTTTCCAAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATTATTGATTTTTTGTCCCCTTATCAGTAAAAGAAAACGTTACTTTGATACACTTTGGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352396" ref_strand="+" ref_description="SGN-E352396 [cTOS-9-J23]">
      <seq>ttactgtcactcgtgataagaataaaatcaccgtcacttgcaactccactttttccaagaggtacctcaaataccttgtcaaaaagtacttgaagaaaaacaacgttagggattggcttagggtgattgcttccaacaaggacaggaatgtttatgagttgcgctacttcaacattgccgagaatgaagcagatgaagaagattaaacatgtctagtcaatgtcccttttatcttcttattttgaaccttatatcatctgtttgagttattaatgagccgtatcttctcatttccagattattgattttttgtccccttatcagtaaaagaaaacgttactttgatacactttggtttgttcatctctggggtcaagtttttgcaaggcatcaatttctctgtattgccttttccctcttgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="+" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="108068" stop="111130"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108368" g_stop="108428" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108429" i_stop="110461" i_length="2033">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110462" g_stop="110831" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="431" r_length="370" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="+" ref_id="SGN-E352396" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352396" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108368" e_stop="108428"/>
          <exon e_start="110462" e_stop="110831"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACTGTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAGGTACTGACTAGTACTATATTTCCACTCCTCATTTCGTGTAATTTGGGTTTTTGCCTGATTTTTAATTGGGTTTATTTGAAAAAATTGATCGTTGAAACTTCGTGTGGGTCGACTTTCATTGTAGTTTGATAATGTTTACACTGACAGATTGATAGGATTTTAGCGTAAACCTATTCTTTTATTCGGGATGTGCTATGCTCTGCAAGGAGTTGTTTTGTTTGGAATAGTGTAGTCATTCACGCATTGAGCTTTGAGTCAGTTGATAATGGGTTAAAATAGAGTTCTTTTTGCAGTTTATTTTAGTTATCAATAGTGATGATGATTGTGTGTTTGTGTTATGTCATTCTACTGCTTGTTTATTCAAAATATTATCCTATTTACATTGAGAAATAAGGAGAAATAGAAGAACTAAAACAGCAGCGTAATATCTTGTAGGTAACCATTTGTATCTTGAACTAGGTATCCTAATTATCCTTGTAGCTCTTGCTGAACTTATGGAACAGATAGTCTATGAGCTCTACACTTCAACGTCCAAGATTAGAAATCGGGGTTGGCTTTTATCGTACTTGGATTATTTTCACAACTGACAGATTGAAATTAACTTATCATAGCCTCTTTTATTGTGGCTTGTTTCTGCTTTACCAAGAGCTCTTATTTGGAATAGTGCATTCATTTATATTTTAAGCTCAGAGTAGATTAACAGTGGTTTTCAAAAGAGGTCCTTTTTGCTGTTTATTTTAGTTTGAGTGCCCTGCACTGCAAGTCTAATAAATAAGCCCTTCTATTCTGGAGTTATTACATTGAAGAGGATGAGCTTATGTCATTCTACTTTTCGTTCATCTAATGCATTATCTTACTTACATTGAGAAGCAAAGAAATAACAGAAAAATTATGGTGGCGTAGTATCTTGTAGTTATTCGTAAATCCAACTGTTTATCTTGTAATTATCCGTAAATCCAACTGTTGGTCTTCTCATATAGCAGGTTCAACCAGGCCCCAGTAACCACTGTTACATTTTTGGACTGTTGTCTGCTCTTTAGTTATTTAGTAAATTTTTATAAATTAGCAGACCCCTTCTTTTGCTTGCATCTTCTTGATGCCTTCTAATGAAATCTCTTTCATCTAAAAAAGATATTCATAACTTGAATAGGGTATGTGCATAATGTTATATAATTATAATAATCCTCACAGATCTTCCTGAATTTATGTTCAGATTGTCAGTGAGCATTAGCTAGATTGTTTGGCTCCTCCCACTTCTCAGTGAAGTAGATTCTTAAGTAGGCGGTTGTTGATGAGACCAATTAGACTGCAACCTAGCCTTTCACTTGTGTCCATTAGTTTGCGTCAAGTGCAATTTTGTTGATTTCATCTTTTACATCCATAATCACACAGAATAGTACACTTGGATTATGTCAAATTACATGTGAAATAGGCTTGGAAGAACTAATATGTATTAAGTTTGTAACTTGAAAGAGATAGGTAACTAACATGTAAGCAGGCTTAGTTATAGGTAATTGATAATATTGATCATTATAGATGCTCTTGCTAACTGAAACATCCTTCAGGGCGTGTAAAGCATATTTTCATGTATTTTTTGTTGGGTTCTGAAGAAAGTCTTCATTTTTTATGTAAGTTTGATGCAGCTGAGTAGAATCTATAGTGGTATTCTTGTTTCATCTGATGTATGTTTCTAAGCTTGTTCTGGAAGTGACATCAACCACTTATTAGCATCACCATTTACCTAGCACATTTTTGGTTCAAGTGATAGTCCAAAGGCTACTTGTAAAAGAAACTGATACTCTAAAGAGAACCAAATGTCCAACATATTTATCATATTACTTTTTTTTTTTTGCAATTTCTGTATGCGCGATTAATGAAAAAAGCTATTGTGATGTTGCATTACTACTGCTATATATTTTATTAATCCTCTTCCCCCACTAAAACCAAAAGAAAGACTGTTAGAAGTAGTGAATTCAGGCAATTCAAGACTAGTAAACAATGCTCTACTTACAATTTTTTCTTCTACTTTTCAGGTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATTATTGATTTTTTGTCCCCTTATCAGTAAAAGAAAACGTTACTTTGATACACTTTGGTTTGTTCATCTCTGGGGTCAAGTTTTTGCAAGGCATCAATTTCTCTGTATTGCCTTTTCCCTCTTGATGATCACAT</genome_strand>
        <mrna_strand>TTACTGTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATTATTGATTTTTTGTCCCCTTATCAGTAAAAGAAAACGTTACTTTGATACACTTTGGTTTGTTCATCTCTGGGGTCAAGTTTTTGCAAGGCATCAATTTCTCTGTATTGCCTTTTCCCTCTTGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E551822" ref_strand="+" ref_description="SGN-E551822 [cTSB-1-P13]">
      <seq>gtcactcgtgataagaataaaatcaccgtcacttgcaactccactttttccaagaggtacctcaaataccttgtcaaaaagtacttgaagaaaaacaacgttagggattggcttagggtgattgcttccaacaaggacaggaatgtttatgagttgcgctacttcaacattgccgagaatgaagcagatgaagaagattaaacatgtctagtcaatgtcccttttatcttcttattttgaaccttatatcatctgtttgagttattaatgagccgtatcttctcatttccagattattgattttttgtccccttatcagtaaaagaaaacgttactttgatacactttggtttgttcatctctggggtcaagtttttgcaaggcatcaatttctctgtattgccttttccctcttgatgatcacatgtaatttatagagtttatctttaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="+" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="108073" stop="111153"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108373" g_stop="108428" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108429" i_stop="110461" i_length="2033">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110462" g_stop="110854" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="449" r_length="393" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="450" polyA_stop="472"/>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="+" ref_id="SGN-E551822" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E551822" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108373" e_stop="108428"/>
          <exon e_start="110462" e_stop="110854"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAGGTACTGACTAGTACTATATTTCCACTCCTCATTTCGTGTAATTTGGGTTTTTGCCTGATTTTTAATTGGGTTTATTTGAAAAAATTGATCGTTGAAACTTCGTGTGGGTCGACTTTCATTGTAGTTTGATAATGTTTACACTGACAGATTGATAGGATTTTAGCGTAAACCTATTCTTTTATTCGGGATGTGCTATGCTCTGCAAGGAGTTGTTTTGTTTGGAATAGTGTAGTCATTCACGCATTGAGCTTTGAGTCAGTTGATAATGGGTTAAAATAGAGTTCTTTTTGCAGTTTATTTTAGTTATCAATAGTGATGATGATTGTGTGTTTGTGTTATGTCATTCTACTGCTTGTTTATTCAAAATATTATCCTATTTACATTGAGAAATAAGGAGAAATAGAAGAACTAAAACAGCAGCGTAATATCTTGTAGGTAACCATTTGTATCTTGAACTAGGTATCCTAATTATCCTTGTAGCTCTTGCTGAACTTATGGAACAGATAGTCTATGAGCTCTACACTTCAACGTCCAAGATTAGAAATCGGGGTTGGCTTTTATCGTACTTGGATTATTTTCACAACTGACAGATTGAAATTAACTTATCATAGCCTCTTTTATTGTGGCTTGTTTCTGCTTTACCAAGAGCTCTTATTTGGAATAGTGCATTCATTTATATTTTAAGCTCAGAGTAGATTAACAGTGGTTTTCAAAAGAGGTCCTTTTTGCTGTTTATTTTAGTTTGAGTGCCCTGCACTGCAAGTCTAATAAATAAGCCCTTCTATTCTGGAGTTATTACATTGAAGAGGATGAGCTTATGTCATTCTACTTTTCGTTCATCTAATGCATTATCTTACTTACATTGAGAAGCAAAGAAATAACAGAAAAATTATGGTGGCGTAGTATCTTGTAGTTATTCGTAAATCCAACTGTTTATCTTGTAATTATCCGTAAATCCAACTGTTGGTCTTCTCATATAGCAGGTTCAACCAGGCCCCAGTAACCACTGTTACATTTTTGGACTGTTGTCTGCTCTTTAGTTATTTAGTAAATTTTTATAAATTAGCAGACCCCTTCTTTTGCTTGCATCTTCTTGATGCCTTCTAATGAAATCTCTTTCATCTAAAAAAGATATTCATAACTTGAATAGGGTATGTGCATAATGTTATATAATTATAATAATCCTCACAGATCTTCCTGAATTTATGTTCAGATTGTCAGTGAGCATTAGCTAGATTGTTTGGCTCCTCCCACTTCTCAGTGAAGTAGATTCTTAAGTAGGCGGTTGTTGATGAGACCAATTAGACTGCAACCTAGCCTTTCACTTGTGTCCATTAGTTTGCGTCAAGTGCAATTTTGTTGATTTCATCTTTTACATCCATAATCACACAGAATAGTACACTTGGATTATGTCAAATTACATGTGAAATAGGCTTGGAAGAACTAATATGTATTAAGTTTGTAACTTGAAAGAGATAGGTAACTAACATGTAAGCAGGCTTAGTTATAGGTAATTGATAATATTGATCATTATAGATGCTCTTGCTAACTGAAACATCCTTCAGGGCGTGTAAAGCATATTTTCATGTATTTTTTGTTGGGTTCTGAAGAAAGTCTTCATTTTTTATGTAAGTTTGATGCAGCTGAGTAGAATCTATAGTGGTATTCTTGTTTCATCTGATGTATGTTTCTAAGCTTGTTCTGGAAGTGACATCAACCACTTATTAGCATCACCATTTACCTAGCACATTTTTGGTTCAAGTGATAGTCCAAAGGCTACTTGTAAAAGAAACTGATACTCTAAAGAGAACCAAATGTCCAACATATTTATCATATTACTTTTTTTTTTTTGCAATTTCTGTATGCGCGATTAATGAAAAAAGCTATTGTGATGTTGCATTACTACTGCTATATATTTTATTAATCCTCTTCCCCCACTAAAACCAAAAGAAAGACTGTTAGAAGTAGTGAATTCAGGCAATTCAAGACTAGTAAACAATGCTCTACTTACAATTTTTTCTTCTACTTTTCAGGTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATTATTGATTTTTTGTCCCCTTATCAGTAAAAGAAAACGTTACTTTGATACACTTTGGTTTGTTCATCTCTGGGGTCAAGTTTTTGCAAGGCATCAATTTCTCTGTATTGCCTTTTCCCTCTTGATGATCACATGTAATTTATAGAGTTTATCTTTT</genome_strand>
        <mrna_strand>GTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATTATTGATTTTTTGTCCCCTTATCAGTAAAAGAAAACGTTACTTTGATACACTTTGGTTTGTTCATCTCTGGGGTCAAGTTTTTGCAAGGCATCAATTTCTCTGTATTGCCTTTTCCCTCTTGATGATCACATGTAATTTATAGAGTTTATCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E553003" ref_strand="+" ref_description="SGN-E553003 [cTSB-5-L2]">
      <seq>gtcactcgtgataagaataaaatcaccgtcacttgcaactccactttttccaagaggtacctcaaataccttgtcaaaaagtacttgaagaaaaacaacgttagggattggcttagggtgattgcttccaacaaggacaggaatgtttatgagttgcgctacttcaacattgccgagaatgaagcagatgaagaagattaaacatgtctagtcaatgtcccttttatcttcttattttgaaccttatatcatctgtttgagttattaatgagccgtatcttctcatttccagattattgattttttgtccccttatcagtaaaagaaaacgttactttgatacactttggtttgttcatctctggggtcaagtttttgcaaggcatcaatttctctgtattgccttttccctcttgatgatcacatgtaatttatagagtttatctttaaaaaaaaaaaaaacaaaaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="+" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="108073" stop="111153"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108373" g_stop="108428" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108429" i_stop="110461" i_length="2033">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110462" g_stop="110854" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="449" r_length="393" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="450" polyA_stop="469"/>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="+" ref_id="SGN-E553003" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E553003" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108373" e_stop="108428"/>
          <exon e_start="110462" e_stop="110854"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAGGTACTGACTAGTACTATATTTCCACTCCTCATTTCGTGTAATTTGGGTTTTTGCCTGATTTTTAATTGGGTTTATTTGAAAAAATTGATCGTTGAAACTTCGTGTGGGTCGACTTTCATTGTAGTTTGATAATGTTTACACTGACAGATTGATAGGATTTTAGCGTAAACCTATTCTTTTATTCGGGATGTGCTATGCTCTGCAAGGAGTTGTTTTGTTTGGAATAGTGTAGTCATTCACGCATTGAGCTTTGAGTCAGTTGATAATGGGTTAAAATAGAGTTCTTTTTGCAGTTTATTTTAGTTATCAATAGTGATGATGATTGTGTGTTTGTGTTATGTCATTCTACTGCTTGTTTATTCAAAATATTATCCTATTTACATTGAGAAATAAGGAGAAATAGAAGAACTAAAACAGCAGCGTAATATCTTGTAGGTAACCATTTGTATCTTGAACTAGGTATCCTAATTATCCTTGTAGCTCTTGCTGAACTTATGGAACAGATAGTCTATGAGCTCTACACTTCAACGTCCAAGATTAGAAATCGGGGTTGGCTTTTATCGTACTTGGATTATTTTCACAACTGACAGATTGAAATTAACTTATCATAGCCTCTTTTATTGTGGCTTGTTTCTGCTTTACCAAGAGCTCTTATTTGGAATAGTGCATTCATTTATATTTTAAGCTCAGAGTAGATTAACAGTGGTTTTCAAAAGAGGTCCTTTTTGCTGTTTATTTTAGTTTGAGTGCCCTGCACTGCAAGTCTAATAAATAAGCCCTTCTATTCTGGAGTTATTACATTGAAGAGGATGAGCTTATGTCATTCTACTTTTCGTTCATCTAATGCATTATCTTACTTACATTGAGAAGCAAAGAAATAACAGAAAAATTATGGTGGCGTAGTATCTTGTAGTTATTCGTAAATCCAACTGTTTATCTTGTAATTATCCGTAAATCCAACTGTTGGTCTTCTCATATAGCAGGTTCAACCAGGCCCCAGTAACCACTGTTACATTTTTGGACTGTTGTCTGCTCTTTAGTTATTTAGTAAATTTTTATAAATTAGCAGACCCCTTCTTTTGCTTGCATCTTCTTGATGCCTTCTAATGAAATCTCTTTCATCTAAAAAAGATATTCATAACTTGAATAGGGTATGTGCATAATGTTATATAATTATAATAATCCTCACAGATCTTCCTGAATTTATGTTCAGATTGTCAGTGAGCATTAGCTAGATTGTTTGGCTCCTCCCACTTCTCAGTGAAGTAGATTCTTAAGTAGGCGGTTGTTGATGAGACCAATTAGACTGCAACCTAGCCTTTCACTTGTGTCCATTAGTTTGCGTCAAGTGCAATTTTGTTGATTTCATCTTTTACATCCATAATCACACAGAATAGTACACTTGGATTATGTCAAATTACATGTGAAATAGGCTTGGAAGAACTAATATGTATTAAGTTTGTAACTTGAAAGAGATAGGTAACTAACATGTAAGCAGGCTTAGTTATAGGTAATTGATAATATTGATCATTATAGATGCTCTTGCTAACTGAAACATCCTTCAGGGCGTGTAAAGCATATTTTCATGTATTTTTTGTTGGGTTCTGAAGAAAGTCTTCATTTTTTATGTAAGTTTGATGCAGCTGAGTAGAATCTATAGTGGTATTCTTGTTTCATCTGATGTATGTTTCTAAGCTTGTTCTGGAAGTGACATCAACCACTTATTAGCATCACCATTTACCTAGCACATTTTTGGTTCAAGTGATAGTCCAAAGGCTACTTGTAAAAGAAACTGATACTCTAAAGAGAACCAAATGTCCAACATATTTATCATATTACTTTTTTTTTTTTGCAATTTCTGTATGCGCGATTAATGAAAAAAGCTATTGTGATGTTGCATTACTACTGCTATATATTTTATTAATCCTCTTCCCCCACTAAAACCAAAAGAAAGACTGTTAGAAGTAGTGAATTCAGGCAATTCAAGACTAGTAAACAATGCTCTACTTACAATTTTTTCTTCTACTTTTCAGGTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATTATTGATTTTTTGTCCCCTTATCAGTAAAAGAAAACGTTACTTTGATACACTTTGGTTTGTTCATCTCTGGGGTCAAGTTTTTGCAAGGCATCAATTTCTCTGTATTGCCTTTTCCCTCTTGATGATCACATGTAATTTATAGAGTTTATCTTTT</genome_strand>
        <mrna_strand>GTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATTATTGATTTTTTGTCCCCTTATCAGTAAAAGAAAACGTTACTTTGATACACTTTGGTTTGTTCATCTCTGGGGTCAAGTTTTTGCAAGGCATCAATTTCTCTGTATTGCCTTTTCCCTCTTGATGATCACATGTAATTTATAGAGTTTATCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E215051" ref_strand="+" ref_description="SGN-E215051 [cLEC-78-E14]">
      <seq>gagcattagctagattgtttggctcctcccacttctcagtgaagtagattcttaagtaggcggttgttgatgagaccaattagactgcaacctagcctttcacttgtgtccattagtttgcgtcaagtgcaattttgttgatttcatcttttacatccataatcacacagaatagtacacttggattatgtcaaattacatgtgaaataggcttggaagaactaatatgtattaagtttgtaacttgaaagagataggtaactaacatgtaagcaggcttagttataggtaattgataatattgatcattatagatgctcttgctaactgaaacatccttcagggcgtgtaaagcatattttcatgtattttttgttgggttctgaagaaagtcttcattttttatgtaagtttgatgcagctgagtagaatctatagtggtattcttgtttcacctgatgtatgtttctaagcttgttctggaagtgacatcaaccacttattagcatcaccatttacctagcacatttttggttcaagtgatagtccaaaggctacttgtaaaagaaactgatactctaaagagaacaaatgtccaacatatttatcatattacttttttttttttttgcaatttctgtatgcgcgattaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="+" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="109351" stop="110604"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109651" g_stop="110304" g_length="654"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="655" r_length="655" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="+" ref_id="SGN-E215051" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E215051" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109651" e_stop="110304"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCATTAGCTAGATTGTTTGGCTCCTCCCACTTCTCAGTGAAGTAGATTCTTAAGTAGGCGGTTGTTGATGAGACCAATTAGACTGCAACCTAGCCTTTCACTTGTGTCCATTAGTTTGCGTCAAGTGCAATTTTGTTGATTTCATCTTTTACATCCATAATCACACAGAATAGTACACTTGGATTATGTCAAATTACATGTGAAATAGGCTTGGAAGAACTAATATGTATTAAGTTTGTAACTTGAAAGAGATAGGTAACTAACATGTAAGCAGGCTTAGTTATAGGTAATTGATAATATTGATCATTATAGATGCTCTTGCTAACTGAAACATCCTTCAGGGCGTGTAAAGCATATTTTCATGTATTTTTTGTTGGGTTCTGAAGAAAGTCTTCATTTTTTATGTAAGTTTGATGCAGCTGAGTAGAATCTATAGTGGTATTCTTGTTTCATCTGATGTATGTTTCTAAGCTTGTTCTGGAAGTGACATCAACCACTTATTAGCATCACCATTTACCTAGCACATTTTTGGTTCAAGTGATAGTCCAAAGGCTACTTGTAAAAGAAACTGATACTCTAAAGAGAACCAAATGTCCAACATATTTATCATATTAC--TTTTTTTTTTTTGCAATTTCTGTATGCGCGATTAATG</genome_strand>
        <mrna_strand>GAGCATTAGCTAGATTGTTTGGCTCCTCCCACTTCTCAGTGAAGTAGATTCTTAAGTAGGCGGTTGTTGATGAGACCAATTAGACTGCAACCTAGCCTTTCACTTGTGTCCATTAGTTTGCGTCAAGTGCAATTTTGTTGATTTCATCTTTTACATCCATAATCACACAGAATAGTACACTTGGATTATGTCAAATTACATGTGAAATAGGCTTGGAAGAACTAATATGTATTAAGTTTGTAACTTGAAAGAGATAGGTAACTAACATGTAAGCAGGCTTAGTTATAGGTAATTGATAATATTGATCATTATAGATGCTCTTGCTAACTGAAACATCCTTCAGGGCGTGTAAAGCATATTTTCATGTATTTTTTGTTGGGTTCTGAAGAAAGTCTTCATTTTTTATGTAAGTTTGATGCAGCTGAGTAGAATCTATAGTGGTATTCTTGTTTCACCTGATGTATGTTTCTAAGCTTGTTCTGGAAGTGACATCAACCACTTATTAGCATCACCATTTACCTAGCACATTTTTGGTTCAAGTGATAGTCCAAAGGCTACTTGTAAAAGAAACTGATACTCTAAAGAGAA-CAAATGTCCAACATATTTATCATATTACTTTTTTTTTTTTTTGCAATTTCTGTATGCGCGATTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E287412" ref_strand="+" ref_description="SGN-E287412 [cLES-15-O22]">
      <seq>tggaacgtaacctaaaatagggccaaaagtgcaaattagagagaggtgccacatttagcaagtaggaacgaaggaaaaccctaatttaacagagtcaccactttccatacactcacactaagccggggacgtcgagtttcatcctaagagaaatacagagagtgtaaagatgagccgagcagcagcagcagcagtgaaaggcgggaagaagaaaggggcaagcttcgtcattgactgttcgaagccggtagaagacagtatcatggagattgcttctcttgacaagttccttcaagagaggattaaggttggtggaaaagctggtgctcttggggattccgttactgttactcgtgacaagaacaagatcaccgtcacctgcaactcaactttttccaagaggtacctcaaataccttgtcaaaaagtacttgaagaaaaataacgtcagggattggcttanggtgattgcttccaacaaggacaggaatgtttacgaattgcgctacttcaacattgctgagaatgaagcagatgaagaagattaaacatgaccattcaatgtctctctttatcttctttcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="+" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="111172" stop="114939"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111472" g_stop="111615" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111616" i_stop="111706" i_length="91">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.808" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111707" g_stop="111963" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="402" r_length="257" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111964" i_stop="114456" i_length="2493">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114457" g_stop="114639" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="585" r_length="183" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="+" ref_id="SGN-E287412" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287412" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111472" e_stop="111615"/>
          <exon e_start="111707" e_stop="111963"/>
          <exon e_start="114457" e_stop="114639"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAACGTAACCTAAAATAGGGCCAAAAGTGCAAATTAGAGAGAGGTGCCACATTTAGCAAGTAGGAACGAAGGAAAACCCTAATTTAACAGAGTCACCAC-TTCCATACACTCACACTAGGCCGTGGACGTCGAGTTTCATCCTGTACGTATGCTCCTACTCTTTTCTTCTCTGTTTCTCTGACGATGAGATTTGTTCTTGAGATCTGATAATTTTTGCTTTTGAATGCCAGCAGAAGAGAAATACAGAGAGTGTAAAGATGAGCCGAGCAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATTGACTGTTCGAAGCCGGTAGAAGACAGTATCATGGAGATTGCTTCTCTTGACAAGTTCCTTCAAGAGAGGATTAAGGTTGGTGGAAAAGCTGGTGCTCTTGGGGATTCCGTTACTGTTACTCGTGACAAGAACAAGATCACCGTCACCTGCAACTCAACTTTTTCCAAGAGGTACTGATTCTATTGCCTCATTTTCAGTTGTGTTTATTTGAAAAAAAAATGATTCTAGAAACTAAACTCTACTCGTAGATCATAAATTACTAGCTACAGTCGACTTCTATTATAGTTTGATAACGATTACACTTACCGATTGACAGTAACTTATCGCAGACCTATTCGATTATCCAGTGAGTTCTGTGTAGTCATTCACACATTAAGCTTTGACTCAGTTGGTAATCAGATAAATATATAGTTAATTTGATAAGTTTTTGATATTTGAATGATTAAATCCGACAAACAGAACCATTTTAGACCTACTCCTGTAGTTAAATGAACTATTTATTTAGGACATTATTCTCTCTTTTTTGGTGTTTATTTTTGTACTAGAGGACGGGCTTCGCACGTGTATTTTATGTGAATTTTTATAGATATGTTATAATGATAAAAATTTCATGGAAATATATATGTAAATTAATGAATAATATAATGTAACAATTACAAAATAAGAATAAAGACTTACGCAATAAAATATTCATAAAAAAACTAAATTAAGAAGTCTGATGGTGATAAAAATAAAAGACAAAAAAAAGACAGATTTAAGAATGATCCAATGTAAACAATGTTCTTATAAGACTGATGTATGTATAGATGAAAAAAATAAGTACATAACTCTCTGAGTTCTTATCGACTCCTTTCATATCCTATCAAAATTCAAGAGGTTTCTTCATCTACTTTAACTATTGAATGAAAATGATAGCCTAGTAATCTTGGTAGGGGTTTCATGAGATTAAAAAAGTTGAATTTATATAGATAGAATAGAAGGAATATCAAAAGATATATTAAAGTTTTAGTTTAAATATTTGGAGGTTATGAATATGAAAAGATGAGAGTTATGAATATTAAGAGTATAAAGTTGAATAAGTAATTAACAAATAATAATAAATAAATGAAGAATATGAAAAAAGAAGTTAAAATTAGCAAACCATGTAGAAAGAACAACTAAAGGTCTTATCACGTAATTAAGCGTTAATAAATTTAGATTTGTGAAGATAGAGTCATTCTTTAATAATAATCGAGAGGACATTATCAACGTGTGTCTCCATTTTGCAGATTTGCACCCTTTATATTATTAAATTCGTTATTTATCATAAAGGATAATACTTTATCCACATAAATTATATTATTCATGAGAGGGGTTAAGGAAAAAGTTATGAGAAAGAGGAAAAATATAGCAATTTAGTAAAGACTTTTTTTTTAAAAAAAAATTATAATTATTATATACATATAGATTATAGATGATAAATATTAATTAATTGGATATTTAATTAGAAATCAATCTTTAGAAGTCTAAAAGTCATTAACCTTTTAATTAAATTTATACAATCAAATATTTAAATATTTTATAACAATTTAATTTATAGGAGGGGTAAAACTGTAATTCAACTTTCAACTTTTTTTGTTGATGCTTTTAGTAATACATGATGAATTAAGAGTGCCCAGACTTGAAGCACAGTTCCACTCTGGATTTATCACTGTTTATTTATCCAAAAACACTATCCTGTTTACATTGGGAAATCAGTAGAAACAGAATGACTAAAACAGCAGTGTGTTCTAAGTTCGCATGATCGTTGAAGCCTTTACTAAGCTTATGGTACAGATAGTCTATATGCTTTATGATTAAGCAACTATGTCTGGGTCCCAAATTAGAAGTCAGGGTTGGCTTTTATTGGAGTTTGATTGTTTTTACAACTGACAGTCTGATATTAACTTATTCATAGCTTCTTTTATTTTGGCTCGTCTCTGCTTTACAAAGATTTCTTATTTGGATAGTGCAACAGCAACAACACCATACCCCATGTAACCCACAAGTGAGGTCTGGGGAGGGTAGAGACTCTGCACTATCCGTTAAGTGTAAGCATACCTTCTTGGATAGTGCAGATATTCATAAATCGCGCTCTTGCTAATGATTTTAAAAGGAAGTCGTTTTAACTGTTTATTATAGTTAGAGTTCCCTGCACTGCAAGTCTAAAAGAAGCTCTCTTCTGTTCAGGATTGTTATACTGAACATGATGAGTTTATATCGTTCTGTTGTTTGTTTATCTAATGCATTATCCTATTTACATCGAGAAACAAAAAAACAATTGAAACGAAAATGAAAGCATAACATCTTGGTGTTCTGGTTTCATCCGTTTTATGTTTCTAAGCTTGTTTTGGAAGTGACATCAACCATTTACTAGCTTCACCATTCACCTACACATCTTAGGCTTGAGTGATATTCTAAAGGCTATTTGTAAAAGAAACTGAGAGTCTAAAACATTATATCAATTTACTTTGGGGTAAATTATGTATGCCCGATTGATGAAAGAAGTTCTTGTGATGTAGAGTTGTTGCTATGTATTCTACTCCTACCCCTTCAAAACCAAAAGAACAGAGTGTTAAAAGTAGTGAAATCAGGCAACCGAGGCTAGTAAACAACAGCTCGACTTACAATCTTCTATTATTCAGGTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAATAACGTCAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTACGAATTGCGCTACTTCAACATTGCTGAGAATGAAGCAGATGAAGAAGATTAAACATGACCATTCAATGTCTCTCTTTATCTTCTTTCTTT</genome_strand>
        <mrna_strand>TGGAACGTAACCTAAAATAGGGCCAAAAGTGCAAATTAGAGAGAGGTGCCACATTTAGCAAGTAGGAACGAAGGAAAACCCTAATTTAACAGAGTCACCACTTTCCATACACTCACACTAAGCCGGGGACGTCGAGTTTCATCCT...........................................................................................AAGAGAAATACAGAGAGTGTAAAGATGAGCCGAGCAGCAGCAGCAGCAGTGAAAGGCGGGAAGAAGAAAGGGGCAAGCTTCGTCATTGACTGTTCGAAGCCGGTAGAAGACAGTATCATGGAGATTGCTTCTCTTGACAAGTTCCTTCAAGAGAGGATTAAGGTTGGTGGAAAAGCTGGTGCTCTTGGGGATTCCGTTACTGTTACTCGTGACAAGAACAAGATCACCGTCACCTGCAACTCAACTTTTTCCAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAATAACGTCAGGGATTGGCTTANGGTGATTGCTTCCAACAAGGACAGGAATGTTTACGAATTGCGCTACTTCAACATTGCTGAGAATGAAGCAGATGAAGAAGATTAAACATGACCATTCAATGTCTCTCTTTATCTTCTTTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E591339" ref_strand="+" ref_description="SGN-E591339 [45049]">
      <seq>gcaagtaggaacgaaggaaaaccctaatttaacagagtcaccacttccatacactcgcagtaggccgtcgagtttcctcctcagaagagaaatacagagtgtaaagatgagccgagcagcagcagcagcagtgaagggtggaaagaagaagggggcaaccttcgtcattgactgttcgaagccggtggaggacagtatcatggagattgcttctcttgacaagttccttcaagagagaattaaggttggtggaaaagctggtgctcttggagattccgtcactgtcagtcgtgataagaataagatcaccgtcacttgcaactccactttctccaagaggtacctcaaataccttgtcaaaaagtacttgaagaaaaataacgtgagggattggcttagggtgattgcctccaacaaggacaggaatgtgtacgaattgcgctacttcaacattgctgagaaatgaagccagatgaaagcaagatttaaacatgggccatttcaaatgtcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="+" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="111229" stop="114922"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111529" g_stop="111615" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="0.897"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111616" i_stop="111703" i_length="88">
            <donor d_prob="0.998" d_score="0.82"/>
            <acceptor a_prob="0.917" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111704" g_stop="111963" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="339" r_length="258" r_score="0.935"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111964" i_stop="114456" i_length="2493">
            <donor d_prob="0.999" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114457" g_stop="114578" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="461" r_length="122" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="+" ref_id="SGN-E591339" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="0.916" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E591339" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111529" e_stop="111615"/>
          <exon e_start="111704" e_stop="111963"/>
          <exon e_start="114457" e_stop="114578"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGTAGGAACGAAGGAAAACCCTAATTTAACAGAGTCACCACTTCCATACACTCACACTAGGCCGTGGACGTCGAGTTTCATCCTGTACGTATGCTCCTACTCTTTTCTTCTCTGTTTCTCTGACGATGAGATTTGTTCTTGAGATCTGATAATTTTTGCTTTTGAATGCCAGCAGAAGAGAAATACAGAGAGTGTAAAGATGAGCCGAGCAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATTGACTGTTCGAAGCCGGTAGAAGACAGTATCATGGAGATTGCTTCTCTTGACAAGTTCCTTCAAGAGAGGATTAAGGTTGGTGGAAAAGCTGGTGCTCTTGGGGATTCCGTTACTGTTACTCGTGACAAGAACAAGATCACCGTCACCTGCAACTCAACTTTTTCCAAGAGGTACTGATTCTATTGCCTCATTTTCAGTTGTGTTTATTTGAAAAAAAAATGATTCTAGAAACTAAACTCTACTCGTAGATCATAAATTACTAGCTACAGTCGACTTCTATTATAGTTTGATAACGATTACACTTACCGATTGACAGTAACTTATCGCAGACCTATTCGATTATCCAGTGAGTTCTGTGTAGTCATTCACACATTAAGCTTTGACTCAGTTGGTAATCAGATAAATATATAGTTAATTTGATAAGTTTTTGATATTTGAATGATTAAATCCGACAAACAGAACCATTTTAGACCTACTCCTGTAGTTAAATGAACTATTTATTTAGGACATTATTCTCTCTTTTTTGGTGTTTATTTTTGTACTAGAGGACGGGCTTCGCACGTGTATTTTATGTGAATTTTTATAGATATGTTATAATGATAAAAATTTCATGGAAATATATATGTAAATTAATGAATAATATAATGTAACAATTACAAAATAAGAATAAAGACTTACGCAATAAAATATTCATAAAAAAACTAAATTAAGAAGTCTGATGGTGATAAAAATAAAAGACAAAAAAAAGACAGATTTAAGAATGATCCAATGTAAACAATGTTCTTATAAGACTGATGTATGTATAGATGAAAAAAATAAGTACATAACTCTCTGAGTTCTTATCGACTCCTTTCATATCCTATCAAAATTCAAGAGGTTTCTTCATCTACTTTAACTATTGAATGAAAATGATAGCCTAGTAATCTTGGTAGGGGTTTCATGAGATTAAAAAAGTTGAATTTATATAGATAGAATAGAAGGAATATCAAAAGATATATTAAAGTTTTAGTTTAAATATTTGGAGGTTATGAATATGAAAAGATGAGAGTTATGAATATTAAGAGTATAAAGTTGAATAAGTAATTAACAAATAATAATAAATAAATGAAGAATATGAAAAAAGAAGTTAAAATTAGCAAACCATGTAGAAAGAACAACTAAAGGTCTTATCACGTAATTAAGCGTTAATAAATTTAGATTTGTGAAGATAGAGTCATTCTTTAATAATAATCGAGAGGACATTATCAACGTGTGTCTCCATTTTGCAGATTTGCACCCTTTATATTATTAAATTCGTTATTTATCATAAAGGATAATACTTTATCCACATAAATTATATTATTCATGAGAGGGGTTAAGGAAAAAGTTATGAGAAAGAGGAAAAATATAGCAATTTAGTAAAGACTTTTTTTTTAAAAAAAAATTATAATTATTATATACATATAGATTATAGATGATAAATATTAATTAATTGGATATTTAATTAGAAATCAATCTTTAGAAGTCTAAAAGTCATTAACCTTTTAATTAAATTTATACAATCAAATATTTAAATATTTTATAACAATTTAATTTATAGGAGGGGTAAAACTGTAATTCAACTTTCAACTTTTTTTGTTGATGCTTTTAGTAATACATGATGAATTAAGAGTGCCCAGACTTGAAGCACAGTTCCACTCTGGATTTATCACTGTTTATTTATCCAAAAACACTATCCTGTTTACATTGGGAAATCAGTAGAAACAGAATGACTAAAACAGCAGTGTGTTCTAAGTTCGCATGATCGTTGAAGCCTTTACTAAGCTTATGGTACAGATAGTCTATATGCTTTATGATTAAGCAACTATGTCTGGGTCCCAAATTAGAAGTCAGGGTTGGCTTTTATTGGAGTTTGATTGTTTTTACAACTGACAGTCTGATATTAACTTATTCATAGCTTCTTTTATTTTGGCTCGTCTCTGCTTTACAAAGATTTCTTATTTGGATAGTGCAACAGCAACAACACCATACCCCATGTAACCCACAAGTGAGGTCTGGGGAGGGTAGAGACTCTGCACTATCCGTTAAGTGTAAGCATACCTTCTTGGATAGTGCAGATATTCATAAATCGCGCTCTTGCTAATGATTTTAAAAGGAAGTCGTTTTAACTGTTTATTATAGTTAGAGTTCCCTGCACTGCAAGTCTAAAAGAAGCTCTCTTCTGTTCAGGATTGTTATACTGAACATGATGAGTTTATATCGTTCTGTTGTTTGTTTATCTAATGCATTATCCTATTTACATCGAGAAACAAAAAAACAATTGAAACGAAAATGAAAGCATAACATCTTGGTGTTCTGGTTTCATCCGTTTTATGTTTCTAAGCTTGTTTTGGAAGTGACATCAACCATTTACTAGCTTCACCATTCACCTACACATCTTAGGCTTGAGTGATATTCTAAAGGCTATTTGTAAAAGAAACTGAGAGTCTAAAACATTATATCAATTTACTTTGGGGTAAATTATGTATGCCCGATTGATGAAAGAAGTTCTTGTGATGTAGAGTTGTTGCTATGTATTCTACTCCTACCCCTTCAAAACCAAAAGAACAGAGTGTTAAAAGTAGTGAAATCAGGCAACCGAGGCTAGTAAACAACAGCTCGACTTACAATCTTCTATTATTCAGGTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAATAACGTCAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTACGAATTGCGCTACTTCAACATTGCTGAGA</genome_strand>
        <mrna_strand>GCAAGTAGGAACGAAGGAAAACCCTAATTTAACAGAGTCACCACTTCCATACACTCGCAGTAGG-C-----CGTCGAGTTTCCTCCT........................................................................................CAGAAGAGAAATAC--AGAGTGTAAAGATGAGCCGAGCAGCAGCAGCAGCAGTGAAGGGTGGAAAGAAGAAGGGGGCAACCTTCGTCATTGACTGTTCGAAGCCGGTGGAGGACAGTATCATGGAGATTGCTTCTCTTGACAAGTTCCTTCAAGAGAGAATTAAGGTTGGTGGAAAAGCTGGTGCTCTTGGAGATTCCGTCACTGTCAGTCGTGATAAGAATAAGATCACCGTCACTTGCAACTCCACTTTCTCCAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAATAACGTGAGGGATTGGCTTAGGGTGATTGCCTCCAACAAGGACAGGAATGTGTACGAATTGCGCTACTTCAACATTGCTGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E338914" ref_strand="+" ref_description="SGN-E338914 [cTOE-21-N17]">
      <seq>cctaatttaacagagtcacgcacttccatacactcacactaggccgtggacgtcgagtttcatcctaagagaaatacagagagtgtaaagatgagccgagcagcagcagcagcagtgaagggcgggaagaagaagggggcaagcttcgtcattgactgttcgaagccggtagaagacagtatcatggagattgcttctcttgacaagttccttcaagagaggattaaggttggtggaaaagctggtgctcttggggattccgttactgttactcgtgacaagaacaagatcaccgtcacctgcaactcaactttttccaagaggtacctcaaataccttgtcaaaaagtacttgaagaaaaataacgtcagggattggcttagggtgattgcttccaacaaggacaggaatgtttacgaattgcgctacttcaacattggctgagaatgaagcagatgaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="+" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="111251" stop="114894"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111551" g_stop="111615" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111616" i_stop="111706" i_length="91">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.808" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111707" g_stop="111963" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="323" r_length="257" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111964" i_stop="114456" i_length="2493">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114457" g_stop="114594" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="462" r_length="139" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="+" ref_id="SGN-E338914" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338914" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111551" e_stop="111615"/>
          <exon e_start="111707" e_stop="111963"/>
          <exon e_start="114457" e_stop="114594"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAATTTAACAGAGTCAC-CACTTCCATACACTCACACTAGGCCGTGGACGTCGAGTTTCATCCTGTACGTATGCTCCTACTCTTTTCTTCTCTGTTTCTCTGACGATGAGATTTGTTCTTGAGATCTGATAATTTTTGCTTTTGAATGCCAGCAGAAGAGAAATACAGAGAGTGTAAAGATGAGCCGAGCAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATTGACTGTTCGAAGCCGGTAGAAGACAGTATCATGGAGATTGCTTCTCTTGACAAGTTCCTTCAAGAGAGGATTAAGGTTGGTGGAAAAGCTGGTGCTCTTGGGGATTCCGTTACTGTTACTCGTGACAAGAACAAGATCACCGTCACCTGCAACTCAACTTTTTCCAAGAGGTACTGATTCTATTGCCTCATTTTCAGTTGTGTTTATTTGAAAAAAAAATGATTCTAGAAACTAAACTCTACTCGTAGATCATAAATTACTAGCTACAGTCGACTTCTATTATAGTTTGATAACGATTACACTTACCGATTGACAGTAACTTATCGCAGACCTATTCGATTATCCAGTGAGTTCTGTGTAGTCATTCACACATTAAGCTTTGACTCAGTTGGTAATCAGATAAATATATAGTTAATTTGATAAGTTTTTGATATTTGAATGATTAAATCCGACAAACAGAACCATTTTAGACCTACTCCTGTAGTTAAATGAACTATTTATTTAGGACATTATTCTCTCTTTTTTGGTGTTTATTTTTGTACTAGAGGACGGGCTTCGCACGTGTATTTTATGTGAATTTTTATAGATATGTTATAATGATAAAAATTTCATGGAAATATATATGTAAATTAATGAATAATATAATGTAACAATTACAAAATAAGAATAAAGACTTACGCAATAAAATATTCATAAAAAAACTAAATTAAGAAGTCTGATGGTGATAAAAATAAAAGACAAAAAAAAGACAGATTTAAGAATGATCCAATGTAAACAATGTTCTTATAAGACTGATGTATGTATAGATGAAAAAAATAAGTACATAACTCTCTGAGTTCTTATCGACTCCTTTCATATCCTATCAAAATTCAAGAGGTTTCTTCATCTACTTTAACTATTGAATGAAAATGATAGCCTAGTAATCTTGGTAGGGGTTTCATGAGATTAAAAAAGTTGAATTTATATAGATAGAATAGAAGGAATATCAAAAGATATATTAAAGTTTTAGTTTAAATATTTGGAGGTTATGAATATGAAAAGATGAGAGTTATGAATATTAAGAGTATAAAGTTGAATAAGTAATTAACAAATAATAATAAATAAATGAAGAATATGAAAAAAGAAGTTAAAATTAGCAAACCATGTAGAAAGAACAACTAAAGGTCTTATCACGTAATTAAGCGTTAATAAATTTAGATTTGTGAAGATAGAGTCATTCTTTAATAATAATCGAGAGGACATTATCAACGTGTGTCTCCATTTTGCAGATTTGCACCCTTTATATTATTAAATTCGTTATTTATCATAAAGGATAATACTTTATCCACATAAATTATATTATTCATGAGAGGGGTTAAGGAAAAAGTTATGAGAAAGAGGAAAAATATAGCAATTTAGTAAAGACTTTTTTTTTAAAAAAAAATTATAATTATTATATACATATAGATTATAGATGATAAATATTAATTAATTGGATATTTAATTAGAAATCAATCTTTAGAAGTCTAAAAGTCATTAACCTTTTAATTAAATTTATACAATCAAATATTTAAATATTTTATAACAATTTAATTTATAGGAGGGGTAAAACTGTAATTCAACTTTCAACTTTTTTTGTTGATGCTTTTAGTAATACATGATGAATTAAGAGTGCCCAGACTTGAAGCACAGTTCCACTCTGGATTTATCACTGTTTATTTATCCAAAAACACTATCCTGTTTACATTGGGAAATCAGTAGAAACAGAATGACTAAAACAGCAGTGTGTTCTAAGTTCGCATGATCGTTGAAGCCTTTACTAAGCTTATGGTACAGATAGTCTATATGCTTTATGATTAAGCAACTATGTCTGGGTCCCAAATTAGAAGTCAGGGTTGGCTTTTATTGGAGTTTGATTGTTTTTACAACTGACAGTCTGATATTAACTTATTCATAGCTTCTTTTATTTTGGCTCGTCTCTGCTTTACAAAGATTTCTTATTTGGATAGTGCAACAGCAACAACACCATACCCCATGTAACCCACAAGTGAGGTCTGGGGAGGGTAGAGACTCTGCACTATCCGTTAAGTGTAAGCATACCTTCTTGGATAGTGCAGATATTCATAAATCGCGCTCTTGCTAATGATTTTAAAAGGAAGTCGTTTTAACTGTTTATTATAGTTAGAGTTCCCTGCACTGCAAGTCTAAAAGAAGCTCTCTTCTGTTCAGGATTGTTATACTGAACATGATGAGTTTATATCGTTCTGTTGTTTGTTTATCTAATGCATTATCCTATTTACATCGAGAAACAAAAAAACAATTGAAACGAAAATGAAAGCATAACATCTTGGTGTTCTGGTTTCATCCGTTTTATGTTTCTAAGCTTGTTTTGGAAGTGACATCAACCATTTACTAGCTTCACCATTCACCTACACATCTTAGGCTTGAGTGATATTCTAAAGGCTATTTGTAAAAGAAACTGAGAGTCTAAAACATTATATCAATTTACTTTGGGGTAAATTATGTATGCCCGATTGATGAAAGAAGTTCTTGTGATGTAGAGTTGTTGCTATGTATTCTACTCCTACCCCTTCAAAACCAAAAGAACAGAGTGTTAAAAGTAGTGAAATCAGGCAACCGAGGCTAGTAAACAACAGCTCGACTTACAATCTTCTATTATTCAGGTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAATAACGTCAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTACGAATTGCGCTACTTCAACATT-GCTGAGAATGAAGCAGATGAAGA</genome_strand>
        <mrna_strand>CCTAATTTAACAGAGTCACGCACTTCCATACACTCACACTAGGCCGTGGACGTCGAGTTTCATCCT...........................................................................................AAGAGAAATACAGAGAGTGTAAAGATGAGCCGAGCAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATTGACTGTTCGAAGCCGGTAGAAGACAGTATCATGGAGATTGCTTCTCTTGACAAGTTCCTTCAAGAGAGGATTAAGGTTGGTGGAAAAGCTGGTGCTCTTGGGGATTCCGTTACTGTTACTCGTGACAAGAACAAGATCACCGTCACCTGCAACTCAACTTTTTCCAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAATAACGTCAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTACGAATTGCGCTACTTCAACATTGGCTGAGAATGAAGCAGATGAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E276642" ref_strand="+" ref_description="SGN-E276642 [cLEN-14-E5]">
      <seq>tttaacagagtcaccacttccatacactcacactaggccgtggacgtcgagtttcatcctcagaagagaaatacagagagtgtaaagatgagccgagcagcagcagcagcagtgaagggcgggaagaagaagggggcaagcttcgtcattgactgttcgaagccggtagaagacagtatcatggagattgcttctcttgacaagttccttcaagagaggattaaggttggtggaaaagctggtgctcttggggattccgttactgttactcgtgacaagaacaagatcaccgtcacctgcaactcaactttttccaagaggtacctcaaataccttgtcaaaaagtacttgaagaaaaataacgtcagggattggcttagggtgattgcttccaacaaggacaggaatgtttacgaattgcgctacttcaacattgctgagaatgaagcagatgaagaagattaaacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="+" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="111256" stop="114906"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111556" g_stop="111615" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111616" i_stop="111703" i_length="88">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111704" g_stop="111963" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="320" r_length="260" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111964" i_stop="114456" i_length="2493">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114457" g_stop="114606" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="470" r_length="150" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="+" ref_id="SGN-E276642" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276642" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111556" e_stop="111615"/>
          <exon e_start="111704" e_stop="111963"/>
          <exon e_start="114457" e_stop="114606"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAACAGAGTCACCACTTCCATACACTCACACTAGGCCGTGGACGTCGAGTTTCATCCTGTACGTATGCTCCTACTCTTTTCTTCTCTGTTTCTCTGACGATGAGATTTGTTCTTGAGATCTGATAATTTTTGCTTTTGAATGCCAGCAGAAGAGAAATACAGAGAGTGTAAAGATGAGCCGAGCAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATTGACTGTTCGAAGCCGGTAGAAGACAGTATCATGGAGATTGCTTCTCTTGACAAGTTCCTTCAAGAGAGGATTAAGGTTGGTGGAAAAGCTGGTGCTCTTGGGGATTCCGTTACTGTTACTCGTGACAAGAACAAGATCACCGTCACCTGCAACTCAACTTTTTCCAAGAGGTACTGATTCTATTGCCTCATTTTCAGTTGTGTTTATTTGAAAAAAAAATGATTCTAGAAACTAAACTCTACTCGTAGATCATAAATTACTAGCTACAGTCGACTTCTATTATAGTTTGATAACGATTACACTTACCGATTGACAGTAACTTATCGCAGACCTATTCGATTATCCAGTGAGTTCTGTGTAGTCATTCACACATTAAGCTTTGACTCAGTTGGTAATCAGATAAATATATAGTTAATTTGATAAGTTTTTGATATTTGAATGATTAAATCCGACAAACAGAACCATTTTAGACCTACTCCTGTAGTTAAATGAACTATTTATTTAGGACATTATTCTCTCTTTTTTGGTGTTTATTTTTGTACTAGAGGACGGGCTTCGCACGTGTATTTTATGTGAATTTTTATAGATATGTTATAATGATAAAAATTTCATGGAAATATATATGTAAATTAATGAATAATATAATGTAACAATTACAAAATAAGAATAAAGACTTACGCAATAAAATATTCATAAAAAAACTAAATTAAGAAGTCTGATGGTGATAAAAATAAAAGACAAAAAAAAGACAGATTTAAGAATGATCCAATGTAAACAATGTTCTTATAAGACTGATGTATGTATAGATGAAAAAAATAAGTACATAACTCTCTGAGTTCTTATCGACTCCTTTCATATCCTATCAAAATTCAAGAGGTTTCTTCATCTACTTTAACTATTGAATGAAAATGATAGCCTAGTAATCTTGGTAGGGGTTTCATGAGATTAAAAAAGTTGAATTTATATAGATAGAATAGAAGGAATATCAAAAGATATATTAAAGTTTTAGTTTAAATATTTGGAGGTTATGAATATGAAAAGATGAGAGTTATGAATATTAAGAGTATAAAGTTGAATAAGTAATTAACAAATAATAATAAATAAATGAAGAATATGAAAAAAGAAGTTAAAATTAGCAAACCATGTAGAAAGAACAACTAAAGGTCTTATCACGTAATTAAGCGTTAATAAATTTAGATTTGTGAAGATAGAGTCATTCTTTAATAATAATCGAGAGGACATTATCAACGTGTGTCTCCATTTTGCAGATTTGCACCCTTTATATTATTAAATTCGTTATTTATCATAAAGGATAATACTTTATCCACATAAATTATATTATTCATGAGAGGGGTTAAGGAAAAAGTTATGAGAAAGAGGAAAAATATAGCAATTTAGTAAAGACTTTTTTTTTAAAAAAAAATTATAATTATTATATACATATAGATTATAGATGATAAATATTAATTAATTGGATATTTAATTAGAAATCAATCTTTAGAAGTCTAAAAGTCATTAACCTTTTAATTAAATTTATACAATCAAATATTTAAATATTTTATAACAATTTAATTTATAGGAGGGGTAAAACTGTAATTCAACTTTCAACTTTTTTTGTTGATGCTTTTAGTAATACATGATGAATTAAGAGTGCCCAGACTTGAAGCACAGTTCCACTCTGGATTTATCACTGTTTATTTATCCAAAAACACTATCCTGTTTACATTGGGAAATCAGTAGAAACAGAATGACTAAAACAGCAGTGTGTTCTAAGTTCGCATGATCGTTGAAGCCTTTACTAAGCTTATGGTACAGATAGTCTATATGCTTTATGATTAAGCAACTATGTCTGGGTCCCAAATTAGAAGTCAGGGTTGGCTTTTATTGGAGTTTGATTGTTTTTACAACTGACAGTCTGATATTAACTTATTCATAGCTTCTTTTATTTTGGCTCGTCTCTGCTTTACAAAGATTTCTTATTTGGATAGTGCAACAGCAACAACACCATACCCCATGTAACCCACAAGTGAGGTCTGGGGAGGGTAGAGACTCTGCACTATCCGTTAAGTGTAAGCATACCTTCTTGGATAGTGCAGATATTCATAAATCGCGCTCTTGCTAATGATTTTAAAAGGAAGTCGTTTTAACTGTTTATTATAGTTAGAGTTCCCTGCACTGCAAGTCTAAAAGAAGCTCTCTTCTGTTCAGGATTGTTATACTGAACATGATGAGTTTATATCGTTCTGTTGTTTGTTTATCTAATGCATTATCCTATTTACATCGAGAAACAAAAAAACAATTGAAACGAAAATGAAAGCATAACATCTTGGTGTTCTGGTTTCATCCGTTTTATGTTTCTAAGCTTGTTTTGGAAGTGACATCAACCATTTACTAGCTTCACCATTCACCTACACATCTTAGGCTTGAGTGATATTCTAAAGGCTATTTGTAAAAGAAACTGAGAGTCTAAAACATTATATCAATTTACTTTGGGGTAAATTATGTATGCCCGATTGATGAAAGAAGTTCTTGTGATGTAGAGTTGTTGCTATGTATTCTACTCCTACCCCTTCAAAACCAAAAGAACAGAGTGTTAAAAGTAGTGAAATCAGGCAACCGAGGCTAGTAAACAACAGCTCGACTTACAATCTTCTATTATTCAGGTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAATAACGTCAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTACGAATTGCGCTACTTCAACATTGCTGAGAATGAAGCAGATGAAGAAGATTAAACATG</genome_strand>
        <mrna_strand>TTTAACAGAGTCACCACTTCCATACACTCACACTAGGCCGTGGACGTCGAGTTTCATCCT........................................................................................CAGAAGAGAAATACAGAGAGTGTAAAGATGAGCCGAGCAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATTGACTGTTCGAAGCCGGTAGAAGACAGTATCATGGAGATTGCTTCTCTTGACAAGTTCCTTCAAGAGAGGATTAAGGTTGGTGGAAAAGCTGGTGCTCTTGGGGATTCCGTTACTGTTACTCGTGACAAGAACAAGATCACCGTCACCTGCAACTCAACTTTTTCCAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAATAACGTCAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTACGAATTGCGCTACTTCAACATTGCTGAGAATGAAGCAGATGAAGAAGATTAAACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E722007" ref_strand="+" ref_description="SGN-E722007 [FC15DG03]">
      <seq>gagagtcaccacttccatacactcacactaggccgtggacgtcgagtttcatcctcagaagagaaatacagagagtgtaaagatgagccgagcagtagcagcagcagtgaagggtggaaagaagaagggggcgagcttcgtcattgactgttcgaagccggtagaagacagtatcatggagattgcttctcttgacaagttccttcaagagaggattaaggttggtggaaaagctggtgctcttggggattccgttactgttactcgtgacaagaacaagatcaccgtcacctgcaactcagctttttccaagaggtacctcaaataccttgtcaaaaagtacttgaagaaaaataacgtcagggattggcttagggtgattgcttccaacaaggacaggaatgtttacgaattgcgctacttcaacattgctgagaatgaagcagatgaagaagattaaacatgaccattcaatgtctctctttatcttcttctttagtcggccttcactttttgatccttgtatcatctgttcgagttactaatgaatcctgtcttctcatttctagattttgtttttgcagtttgcttatcagtaaaagaaaacattacatcgatactttggtttgtctatctttggggttaattatgaaaatgtcaatttatctgtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="+" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="111262" stop="115103"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111561" g_stop="111615" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111616" i_stop="111703" i_length="88">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111704" g_stop="111963" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="315" r_length="260" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111964" i_stop="114456" i_length="2493">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114457" g_stop="114802" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="670" r_length="355" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="672" polyA_stop="722"/>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="+" ref_id="SGN-E722007" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="0.916" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E722007" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111561" e_stop="111615"/>
          <exon e_start="111704" e_stop="111963"/>
          <exon e_start="114457" e_stop="114802"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGTCACCACTTCCATACACTCACACTAGGCCGTGGACGTCGAGTTTCATCCTGTACGTATGCTCCTACTCTTTTCTTCTCTGTTTCTCTGACGATGAGATTTGTTCTTGAGATCTGATAATTTTTGCTTTTGAATGCCAGCAGAAGAGAAATACAGAGAGTGTAAAGATGAGCCGAGCAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATTGACTGTTCGAAGCCGGTAGAAGACAGTATCATGGAGATTGCTTCTCTTGACAAGTTCCTTCAAGAGAGGATTAAGGTTGGTGGAAAAGCTGGTGCTCTTGGGGATTCCGTTACTGTTACTCGTGACAAGAACAAGATCACCGTCACCTGCAACTCAACTTTTTCCAAGAGGTACTGATTCTATTGCCTCATTTTCAGTTGTGTTTATTTGAAAAAAAAATGATTCTAGAAACTAAACTCTACTCGTAGATCATAAATTACTAGCTACAGTCGACTTCTATTATAGTTTGATAACGATTACACTTACCGATTGACAGTAACTTATCGCAGACCTATTCGATTATCCAGTGAGTTCTGTGTAGTCATTCACACATTAAGCTTTGACTCAGTTGGTAATCAGATAAATATATAGTTAATTTGATAAGTTTTTGATATTTGAATGATTAAATCCGACAAACAGAACCATTTTAGACCTACTCCTGTAGTTAAATGAACTATTTATTTAGGACATTATTCTCTCTTTTTTGGTGTTTATTTTTGTACTAGAGGACGGGCTTCGCACGTGTATTTTATGTGAATTTTTATAGATATGTTATAATGATAAAAATTTCATGGAAATATATATGTAAATTAATGAATAATATAATGTAACAATTACAAAATAAGAATAAAGACTTACGCAATAAAATATTCATAAAAAAACTAAATTAAGAAGTCTGATGGTGATAAAAATAAAAGACAAAAAAAAGACAGATTTAAGAATGATCCAATGTAAACAATGTTCTTATAAGACTGATGTATGTATAGATGAAAAAAATAAGTACATAACTCTCTGAGTTCTTATCGACTCCTTTCATATCCTATCAAAATTCAAGAGGTTTCTTCATCTACTTTAACTATTGAATGAAAATGATAGCCTAGTAATCTTGGTAGGGGTTTCATGAGATTAAAAAAGTTGAATTTATATAGATAGAATAGAAGGAATATCAAAAGATATATTAAAGTTTTAGTTTAAATATTTGGAGGTTATGAATATGAAAAGATGAGAGTTATGAATATTAAGAGTATAAAGTTGAATAAGTAATTAACAAATAATAATAAATAAATGAAGAATATGAAAAAAGAAGTTAAAATTAGCAAACCATGTAGAAAGAACAACTAAAGGTCTTATCACGTAATTAAGCGTTAATAAATTTAGATTTGTGAAGATAGAGTCATTCTTTAATAATAATCGAGAGGACATTATCAACGTGTGTCTCCATTTTGCAGATTTGCACCCTTTATATTATTAAATTCGTTATTTATCATAAAGGATAATACTTTATCCACATAAATTATATTATTCATGAGAGGGGTTAAGGAAAAAGTTATGAGAAAGAGGAAAAATATAGCAATTTAGTAAAGACTTTTTTTTTAAAAAAAAATTATAATTATTATATACATATAGATTATAGATGATAAATATTAATTAATTGGATATTTAATTAGAAATCAATCTTTAGAAGTCTAAAAGTCATTAACCTTTTAATTAAATTTATACAATCAAATATTTAAATATTTTATAACAATTTAATTTATAGGAGGGGTAAAACTGTAATTCAACTTTCAACTTTTTTTGTTGATGCTTTTAGTAATACATGATGAATTAAGAGTGCCCAGACTTGAAGCACAGTTCCACTCTGGATTTATCACTGTTTATTTATCCAAAAACACTATCCTGTTTACATTGGGAAATCAGTAGAAACAGAATGACTAAAACAGCAGTGTGTTCTAAGTTCGCATGATCGTTGAAGCCTTTACTAAGCTTATGGTACAGATAGTCTATATGCTTTATGATTAAGCAACTATGTCTGGGTCCCAAATTAGAAGTCAGGGTTGGCTTTTATTGGAGTTTGATTGTTTTTACAACTGACAGTCTGATATTAACTTATTCATAGCTTCTTTTATTTTGGCTCGTCTCTGCTTTACAAAGATTTCTTATTTGGATAGTGCAACAGCAACAACACCATACCCCATGTAACCCACAAGTGAGGTCTGGGGAGGGTAGAGACTCTGCACTATCCGTTAAGTGTAAGCATACCTTCTTGGATAGTGCAGATATTCATAAATCGCGCTCTTGCTAATGATTTTAAAAGGAAGTCGTTTTAACTGTTTATTATAGTTAGAGTTCCCTGCACTGCAAGTCTAAAAGAAGCTCTCTTCTGTTCAGGATTGTTATACTGAACATGATGAGTTTATATCGTTCTGTTGTTTGTTTATCTAATGCATTATCCTATTTACATCGAGAAACAAAAAAACAATTGAAACGAAAATGAAAGCATAACATCTTGGTGTTCTGGTTTCATCCGTTTTATGTTTCTAAGCTTGTTTTGGAAGTGACATCAACCATTTACTAGCTTCACCATTCACCTACACATCTTAGGCTTGAGTGATATTCTAAAGGCTATTTGTAAAAGAAACTGAGAGTCTAAAACATTATATCAATTTACTTTGGGGTAAATTATGTATGCCCGATTGATGAAAGAAGTTCTTGTGATGTAGAGTTGTTGCTATGTATTCTACTCCTACCCCTTCAAAACCAAAAGAACAGAGTGTTAAAAGTAGTGAAATCAGGCAACCGAGGCTAGTAAACAACAGCTCGACTTACAATCTTCTATTATTCAGGTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAATAACGTCAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTACGAATTGCGCTACTTCAACATTGCTGAGAATGAAGCAGATGAAGAAGATTAAACATGACCATTCAATGTCTCTCTTTATCTTCTTTCTTTAGTCGGCCTTCACTTTTTGATCCTTGTATCA-----TC-----ACTAATGAATCCTGTCTTCTCATTTCTAGATTTTGTTTTTGCAGTTTGCTTATCAGTAAAAGAAAACATTACATCGATACTTTGGTTTGTCTATCTTTGGGGATAATTATGAAAATGTCAATTTATCTGT</genome_strand>
        <mrna_strand>GAGAGTCACCACTTCCATACACTCACACTAGGCCGTGGACGTCGAGTTTCATCCT........................................................................................CAGAAGAGAAATACAGAGAGTGTAAAGATGAGCCGAGCAGTAGCAGCAGCAGTGAAGGGTGGAAAGAAGAAGGGGGCGAGCTTCGTCATTGACTGTTCGAAGCCGGTAGAAGACAGTATCATGGAGATTGCTTCTCTTGACAAGTTCCTTCAAGAGAGGATTAAGGTTGGTGGAAAAGCTGGTGCTCTTGGGGATTCCGTTACTGTTACTCGTGACAAGAACAAGATCACCGTCACCTGCAACTCAGCTTTTTCCAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAATAACGTCAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTACGAATTGCGCTACTTCAACATTGCTGAGAATGAAGCAGATGAAGAAGATTAAACATGACCATTCAATGTCTCTCTTTATCTTC-TTCTTTAGTCGGCCTTCACTTTTTGATCCTTGTATCATCTGTTCGAGTTACTAATGAATCCTGTCTTCTCATTTCTAGATTTTGTTTTTGCAGTTTGCTTATCAGTAAAAGAAAACATTACATCGATACTTTGGTTTGTCTATCTTTGGGGTTAATTATGAAAATGTCAATTTATCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E571534" ref_strand="+" ref_description="SGN-E571534 [14375]">
      <seq>cacttccatacactcgcagtaggccgtcgagtttcctcctcagaagagaaatacagagtgtaaagatgagccgagcagcagcagcagcagtgaagggtggaaagaagaagggggcaaccttcgtcattgactgttcgaagccggtggaggacagtatcatggagattgcttctcttgacaagttccttcaagagagaattaaggttggtggaaaagctggtgctcttggagattccgtcactgtcagtcgtgataagaataagatcaccgtcacttgcaactccactttctccaagaggtacctcaaataccttgtcaaaaagtacttgaagaaaaataacgtgagggattggcttagggtgattgcctccaacaaggacaggaatgtttacgaattgcgctacttcaacattgctgagaatgaagcagatgaagaagattaaacatggccattcaatgtctctctttatctttttctttaatcggcctttgttttttgatccttatatcatctgttcgagttactaatgaaatcttgtcttctcatttctagattcattgttttgcagtttgcttatcagtaaaagaaaaacattacatcgatactttggttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="+" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="107738" stop="115060"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111570" g_stop="111615" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="0.804"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111616" i_stop="111703" i_length="88">
            <donor d_prob="0.998" d_score="0.80"/>
            <acceptor a_prob="0.917" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111704" g_stop="111963" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="298" r_length="258" r_score="0.935"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111964" i_stop="114456" i_length="2493">
            <donor d_prob="0.999" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114457" g_stop="114760" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="614" r_length="316" r_score="0.872"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="+" ref_id="SGN-E571534" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E571534" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111570" e_stop="111615"/>
          <exon e_start="111704" e_stop="111963"/>
          <exon e_start="114457" e_stop="114760"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTCCATACACTCACACTAGGCCGTGGACGTCGAGTTTCATCCTGTACGTATGCTCCTACTCTTTTCTTCTCTGTTTCTCTGACGATGAGATTTGTTCTTGAGATCTGATAATTTTTGCTTTTGAATGCCAGCAGAAGAGAAATACAGAGAGTGTAAAGATGAGCCGAGCAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATTGACTGTTCGAAGCCGGTAGAAGACAGTATCATGGAGATTGCTTCTCTTGACAAGTTCCTTCAAGAGAGGATTAAGGTTGGTGGAAAAGCTGGTGCTCTTGGGGATTCCGTTACTGTTACTCGTGACAAGAACAAGATCACCGTCACCTGCAACTCAACTTTTTCCAAGAGGTACTGATTCTATTGCCTCATTTTCAGTTGTGTTTATTTGAAAAAAAAATGATTCTAGAAACTAAACTCTACTCGTAGATCATAAATTACTAGCTACAGTCGACTTCTATTATAGTTTGATAACGATTACACTTACCGATTGACAGTAACTTATCGCAGACCTATTCGATTATCCAGTGAGTTCTGTGTAGTCATTCACACATTAAGCTTTGACTCAGTTGGTAATCAGATAAATATATAGTTAATTTGATAAGTTTTTGATATTTGAATGATTAAATCCGACAAACAGAACCATTTTAGACCTACTCCTGTAGTTAAATGAACTATTTATTTAGGACATTATTCTCTCTTTTTTGGTGTTTATTTTTGTACTAGAGGACGGGCTTCGCACGTGTATTTTATGTGAATTTTTATAGATATGTTATAATGATAAAAATTTCATGGAAATATATATGTAAATTAATGAATAATATAATGTAACAATTACAAAATAAGAATAAAGACTTACGCAATAAAATATTCATAAAAAAACTAAATTAAGAAGTCTGATGGTGATAAAAATAAAAGACAAAAAAAAGACAGATTTAAGAATGATCCAATGTAAACAATGTTCTTATAAGACTGATGTATGTATAGATGAAAAAAATAAGTACATAACTCTCTGAGTTCTTATCGACTCCTTTCATATCCTATCAAAATTCAAGAGGTTTCTTCATCTACTTTAACTATTGAATGAAAATGATAGCCTAGTAATCTTGGTAGGGGTTTCATGAGATTAAAAAAGTTGAATTTATATAGATAGAATAGAAGGAATATCAAAAGATATATTAAAGTTTTAGTTTAAATATTTGGAGGTTATGAATATGAAAAGATGAGAGTTATGAATATTAAGAGTATAAAGTTGAATAAGTAATTAACAAATAATAATAAATAAATGAAGAATATGAAAAAAGAAGTTAAAATTAGCAAACCATGTAGAAAGAACAACTAAAGGTCTTATCACGTAATTAAGCGTTAATAAATTTAGATTTGTGAAGATAGAGTCATTCTTTAATAATAATCGAGAGGACATTATCAACGTGTGTCTCCATTTTGCAGATTTGCACCCTTTATATTATTAAATTCGTTATTTATCATAAAGGATAATACTTTATCCACATAAATTATATTATTCATGAGAGGGGTTAAGGAAAAAGTTATGAGAAAGAGGAAAAATATAGCAATTTAGTAAAGACTTTTTTTTTAAAAAAAAATTATAATTATTATATACATATAGATTATAGATGATAAATATTAATTAATTGGATATTTAATTAGAAATCAATCTTTAGAAGTCTAAAAGTCATTAACCTTTTAATTAAATTTATACAATCAAATATTTAAATATTTTATAACAATTTAATTTATAGGAGGGGTAAAACTGTAATTCAACTTTCAACTTTTTTTGTTGATGCTTTTAGTAATACATGATGAATTAAGAGTGCCCAGACTTGAAGCACAGTTCCACTCTGGATTTATCACTGTTTATTTATCCAAAAACACTATCCTGTTTACATTGGGAAATCAGTAGAAACAGAATGACTAAAACAGCAGTGTGTTCTAAGTTCGCATGATCGTTGAAGCCTTTACTAAGCTTATGGTACAGATAGTCTATATGCTTTATGATTAAGCAACTATGTCTGGGTCCCAAATTAGAAGTCAGGGTTGGCTTTTATTGGAGTTTGATTGTTTTTACAACTGACAGTCTGATATTAACTTATTCATAGCTTCTTTTATTTTGGCTCGTCTCTGCTTTACAAAGATTTCTTATTTGGATAGTGCAACAGCAACAACACCATACCCCATGTAACCCACAAGTGAGGTCTGGGGAGGGTAGAGACTCTGCACTATCCGTTAAGTGTAAGCATACCTTCTTGGATAGTGCAGATATTCATAAATCGCGCTCTTGCTAATGATTTTAAAAGGAAGTCGTTTTAACTGTTTATTATAGTTAGAGTTCCCTGCACTGCAAGTCTAAAAGAAGCTCTCTTCTGTTCAGGATTGTTATACTGAACATGATGAGTTTATATCGTTCTGTTGTTTGTTTATCTAATGCATTATCCTATTTACATCGAGAAACAAAAAAACAATTGAAACGAAAATGAAAGCATAACATCTTGGTGTTCTGGTTTCATCCGTTTTATGTTTCTAAGCTTGTTTTGGAAGTGACATCAACCATTTACTAGCTTCACCATTCACCTACACATCTTAGGCTTGAGTGATATTCTAAAGGCTATTTGTAAAAGAAACTGAGAGTCTAAAACATTATATCAATTTACTTTGGGGTAAATTATGTATGCCCGATTGATGAAAGAAGTTCTTGTGATGTAGAGTTGTTGCTATGTATTCTACTCCTACCCCTTCAAAACCAAAAGAACAGAGTGTTAAAAGTAGTGAAATCAGGCAACCGAGGCTAGTAAACAACAGCTCGACTTACAATCTTCTATTATTCAGGTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAATAACGTCAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTACGAATTGCGCTACTTCAACATTGCTGAGAATGAAGCAGATGAAGAAGATTAAACATGACCATTCAATGTCTCTCTTTATCTTCTTTCTTTAGTCGGCCTTCACTTTTTGATCCTTGTATCA-----TC-----ACTAATG-AATCCTGTCTTCTCATTTCTAGATT-TTGTTTTTGCAGTTTGCTTATCAGTAAAAG-AAAACATTACATCGATACTTTGGTTT</genome_strand>
        <mrna_strand>CACTTCCATACACTCGCAGTAGG-C-----CGTCGAGTTTCCTCCT........................................................................................CAGAAGAGAAATAC--AGAGTGTAAAGATGAGCCGAGCAGCAGCAGCAGCAGTGAAGGGTGGAAAGAAGAAGGGGGCAACCTTCGTCATTGACTGTTCGAAGCCGGTGGAGGACAGTATCATGGAGATTGCTTCTCTTGACAAGTTCCTTCAAGAGAGAATTAAGGTTGGTGGAAAAGCTGGTGCTCTTGGAGATTCCGTCACTGTCAGTCGTGATAAGAATAAGATCACCGTCACTTGCAACTCCACTTTCTCCAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAATAACGTGAGGGATTGGCTTAGGGTGATTGCCTCCAACAAGGACAGGAATGTTTACGAATTGCGCTACTTCAACATTGCTGAGAATGAAGCAGATGAAGAAGATTAAACATGGCCATTCAATGTCTCTCTTTATCTT-TTTCTTTAATCGGCCTTTGTTTTTTGATCCTTATATCATCTGTTCGAGTTACTAATGAAATCTTGTCTTCTCATTTCTAGATTCATTGTTTTGCAGTTTGCTTATCAGTAAAAGAAAAACATTACATCGATACTTTGGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E345647" ref_strand="+" ref_description="SGN-E345647 [cTOF-18-K6]">
      <seq>cactcacactaggccgtggacgtcgagtttcatcctcagaagagaaatacagagagtgtaaagatgagccgagcagcagcagcagcagtgaagggcgggaagaagaagggggcaagcttcgtcattgactgttcgaagccggtagaagacagtatcatggagattgcttctcttgacaagttccttcaagagaggattaaggttggtggaaaagctggtgctcttggggattccgttactgttactcgtgacaagaacaagatcaccgtcacctgcaactcaactttttccaagaggtacctcaaataccttgtcaaaaagtacttgaagaaaaataacgtcagggattggcttagggtgattgcttccaacaaggacaggaatgtttacgaattgcgctacttcaacattgctgagaatgaagcagatgaagaagattaaacatgaccattcaatgtctctctttatcttctttctttagtcggccttcactttttgatccttgtatcatcactaatgaatcctgtcttctcatttctagattntgtttttgcagtttgcttatcagtaaaagaaaacattacatcgatactttggtttgtctatctttggggataattatgaaaatgtcaatttatctgaattgcctttctcctctggatgatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="+" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="111280" stop="115127"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111580" g_stop="111615" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111616" i_stop="111703" i_length="88">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111704" g_stop="111963" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="296" r_length="260" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111964" i_stop="114456" i_length="2493">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114457" g_stop="114827" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="667" r_length="371" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="+" ref_id="SGN-E345647" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345647" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111580" e_stop="111615"/>
          <exon e_start="111704" e_stop="111963"/>
          <exon e_start="114457" e_stop="114827"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTCACACTAGGCCGTGGACGTCGAGTTTCATCCTGTACGTATGCTCCTACTCTTTTCTTCTCTGTTTCTCTGACGATGAGATTTGTTCTTGAGATCTGATAATTTTTGCTTTTGAATGCCAGCAGAAGAGAAATACAGAGAGTGTAAAGATGAGCCGAGCAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATTGACTGTTCGAAGCCGGTAGAAGACAGTATCATGGAGATTGCTTCTCTTGACAAGTTCCTTCAAGAGAGGATTAAGGTTGGTGGAAAAGCTGGTGCTCTTGGGGATTCCGTTACTGTTACTCGTGACAAGAACAAGATCACCGTCACCTGCAACTCAACTTTTTCCAAGAGGTACTGATTCTATTGCCTCATTTTCAGTTGTGTTTATTTGAAAAAAAAATGATTCTAGAAACTAAACTCTACTCGTAGATCATAAATTACTAGCTACAGTCGACTTCTATTATAGTTTGATAACGATTACACTTACCGATTGACAGTAACTTATCGCAGACCTATTCGATTATCCAGTGAGTTCTGTGTAGTCATTCACACATTAAGCTTTGACTCAGTTGGTAATCAGATAAATATATAGTTAATTTGATAAGTTTTTGATATTTGAATGATTAAATCCGACAAACAGAACCATTTTAGACCTACTCCTGTAGTTAAATGAACTATTTATTTAGGACATTATTCTCTCTTTTTTGGTGTTTATTTTTGTACTAGAGGACGGGCTTCGCACGTGTATTTTATGTGAATTTTTATAGATATGTTATAATGATAAAAATTTCATGGAAATATATATGTAAATTAATGAATAATATAATGTAACAATTACAAAATAAGAATAAAGACTTACGCAATAAAATATTCATAAAAAAACTAAATTAAGAAGTCTGATGGTGATAAAAATAAAAGACAAAAAAAAGACAGATTTAAGAATGATCCAATGTAAACAATGTTCTTATAAGACTGATGTATGTATAGATGAAAAAAATAAGTACATAACTCTCTGAGTTCTTATCGACTCCTTTCATATCCTATCAAAATTCAAGAGGTTTCTTCATCTACTTTAACTATTGAATGAAAATGATAGCCTAGTAATCTTGGTAGGGGTTTCATGAGATTAAAAAAGTTGAATTTATATAGATAGAATAGAAGGAATATCAAAAGATATATTAAAGTTTTAGTTTAAATATTTGGAGGTTATGAATATGAAAAGATGAGAGTTATGAATATTAAGAGTATAAAGTTGAATAAGTAATTAACAAATAATAATAAATAAATGAAGAATATGAAAAAAGAAGTTAAAATTAGCAAACCATGTAGAAAGAACAACTAAAGGTCTTATCACGTAATTAAGCGTTAATAAATTTAGATTTGTGAAGATAGAGTCATTCTTTAATAATAATCGAGAGGACATTATCAACGTGTGTCTCCATTTTGCAGATTTGCACCCTTTATATTATTAAATTCGTTATTTATCATAAAGGATAATACTTTATCCACATAAATTATATTATTCATGAGAGGGGTTAAGGAAAAAGTTATGAGAAAGAGGAAAAATATAGCAATTTAGTAAAGACTTTTTTTTTAAAAAAAAATTATAATTATTATATACATATAGATTATAGATGATAAATATTAATTAATTGGATATTTAATTAGAAATCAATCTTTAGAAGTCTAAAAGTCATTAACCTTTTAATTAAATTTATACAATCAAATATTTAAATATTTTATAACAATTTAATTTATAGGAGGGGTAAAACTGTAATTCAACTTTCAACTTTTTTTGTTGATGCTTTTAGTAATACATGATGAATTAAGAGTGCCCAGACTTGAAGCACAGTTCCACTCTGGATTTATCACTGTTTATTTATCCAAAAACACTATCCTGTTTACATTGGGAAATCAGTAGAAACAGAATGACTAAAACAGCAGTGTGTTCTAAGTTCGCATGATCGTTGAAGCCTTTACTAAGCTTATGGTACAGATAGTCTATATGCTTTATGATTAAGCAACTATGTCTGGGTCCCAAATTAGAAGTCAGGGTTGGCTTTTATTGGAGTTTGATTGTTTTTACAACTGACAGTCTGATATTAACTTATTCATAGCTTCTTTTATTTTGGCTCGTCTCTGCTTTACAAAGATTTCTTATTTGGATAGTGCAACAGCAACAACACCATACCCCATGTAACCCACAAGTGAGGTCTGGGGAGGGTAGAGACTCTGCACTATCCGTTAAGTGTAAGCATACCTTCTTGGATAGTGCAGATATTCATAAATCGCGCTCTTGCTAATGATTTTAAAAGGAAGTCGTTTTAACTGTTTATTATAGTTAGAGTTCCCTGCACTGCAAGTCTAAAAGAAGCTCTCTTCTGTTCAGGATTGTTATACTGAACATGATGAGTTTATATCGTTCTGTTGTTTGTTTATCTAATGCATTATCCTATTTACATCGAGAAACAAAAAAACAATTGAAACGAAAATGAAAGCATAACATCTTGGTGTTCTGGTTTCATCCGTTTTATGTTTCTAAGCTTGTTTTGGAAGTGACATCAACCATTTACTAGCTTCACCATTCACCTACACATCTTAGGCTTGAGTGATATTCTAAAGGCTATTTGTAAAAGAAACTGAGAGTCTAAAACATTATATCAATTTACTTTGGGGTAAATTATGTATGCCCGATTGATGAAAGAAGTTCTTGTGATGTAGAGTTGTTGCTATGTATTCTACTCCTACCCCTTCAAAACCAAAAGAACAGAGTGTTAAAAGTAGTGAAATCAGGCAACCGAGGCTAGTAAACAACAGCTCGACTTACAATCTTCTATTATTCAGGTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAATAACGTCAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTACGAATTGCGCTACTTCAACATTGCTGAGAATGAAGCAGATGAAGAAGATTAAACATGACCATTCAATGTCTCTCTTTATCTTCTTTCTTTAGTCGGCCTTCACTTTTTGATCCTTGTATCATCACTAATGAATCCTGTCTTCTCATTTCTAGATTTTGTTTTTGCAGTTTGCTTATCAGTAAAAGAAAACATTACATCGATACTTTGGTTTGTCTATCTTTGGGGATAATTATGAAAATGTCAATTTATCTGTATTGCCTTTCTCCTCTGGATGATCT</genome_strand>
        <mrna_strand>CACTCACACTAGGCCGTGGACGTCGAGTTTCATCCT........................................................................................CAGAAGAGAAATACAGAGAGTGTAAAGATGAGCCGAGCAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATTGACTGTTCGAAGCCGGTAGAAGACAGTATCATGGAGATTGCTTCTCTTGACAAGTTCCTTCAAGAGAGGATTAAGGTTGGTGGAAAAGCTGGTGCTCTTGGGGATTCCGTTACTGTTACTCGTGACAAGAACAAGATCACCGTCACCTGCAACTCAACTTTTTCCAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAATAACGTCAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTACGAATTGCGCTACTTCAACATTGCTGAGAATGAAGCAGATGAAGAAGATTAAACATGACCATTCAATGTCTCTCTTTATCTTCTTTCTTTAGTCGGCCTTCACTTTTTGATCCTTGTATCATCACTAATGAATCCTGTCTTCTCATTTCTAGATTNTGTTTTTGCAGTTTGCTTATCAGTAAAAGAAAACATTACATCGATACTTTGGTTTGTCTATCTTTGGGGATAATTATGAAAATGTCAATTTATCTGAATTGCCTTTCTCCTCTGGATGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E458920" ref_strand="+" ref_description="SGN-E458920 [cPRO-32-F10]">
      <seq>cactcacagtaggccgtcgagtttcctccttaaagagaaatacagagcgtaaagatgagccgagcagcagcagcagcagtgaagggcgggaagaagaagggtgcaagcttcgtcattgactgttcgaagccagtagaagacagtatcatggagattgcttctcttgacaagttccttcaagagagaattaaggttggtggaaaagctggtgctcttggggattccgttactgtcactcgtgacaagaacaagatcaccgtcacctgcaactcgactttttccaagaggtacctcaaataccttgtcaaaaagtacttgaagaaaaataacgtcagggattggcttagagtgattgcttccaacaaggacaggaatgtttatgaattgcgctacttcaacattgctgagaatgaagcagatgaagaagattaaacatggccattcaatgtctctctttatcttcttctttaagcggccttcgttttttgatccttatatcatctgttcgagttactaatgaatcttgtcttctcatttctagattattgttttgcagtttgcttatcagtaaaagaaaacattacatcgatactttggtttgttcatctttggggcaagttatgcaaaagtcaatttatctgtattgcatttctcctcttgatgatcacatgtaatttaatttgtgtgcattggagctataaacggccaagtgaaagtttagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="+" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="111407" stop="115141"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111586" g_stop="111615" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="0.700"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111616" i_stop="111703" i_length="88">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.917" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111704" g_stop="111963" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="287" r_length="257" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111964" i_stop="114456" i_length="2493">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114457" g_stop="114823" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="663" r_length="376" r_score="0.886"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="+" ref_id="SGN-E458920" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="0.910" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E458920" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111586" e_stop="111615"/>
          <exon e_start="111704" e_stop="111963"/>
          <exon e_start="114457" e_stop="114823"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTAGGCCGTGGACGTCGAGTTTCATCCTGTACGTATGCTCCTACTCTTTTCTTCTCTGTTTCTCTGACGATGAGATTTGTTCTTGAGATCTGATAATTTTTGCTTTTGAATGCCAGCAGAAGAGAAATACAGAGAGTGTAAAGATGAGCCGAGCAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATTGACTGTTCGAAGCCGGTAGAAGACAGTATCATGGAGATTGCTTCTCTTGACAAGTTCCTTCAAGAGAGGATTAAGGTTGGTGGAAAAGCTGGTGCTCTTGGGGATTCCGTTACTGTTACTCGTGACAAGAACAAGATCACCGTCACCTGCAACTCAACTTTTTCCAAGAGGTACTGATTCTATTGCCTCATTTTCAGTTGTGTTTATTTGAAAAAAAAATGATTCTAGAAACTAAACTCTACTCGTAGATCATAAATTACTAGCTACAGTCGACTTCTATTATAGTTTGATAACGATTACACTTACCGATTGACAGTAACTTATCGCAGACCTATTCGATTATCCAGTGAGTTCTGTGTAGTCATTCACACATTAAGCTTTGACTCAGTTGGTAATCAGATAAATATATAGTTAATTTGATAAGTTTTTGATATTTGAATGATTAAATCCGACAAACAGAACCATTTTAGACCTACTCCTGTAGTTAAATGAACTATTTATTTAGGACATTATTCTCTCTTTTTTGGTGTTTATTTTTGTACTAGAGGACGGGCTTCGCACGTGTATTTTATGTGAATTTTTATAGATATGTTATAATGATAAAAATTTCATGGAAATATATATGTAAATTAATGAATAATATAATGTAACAATTACAAAATAAGAATAAAGACTTACGCAATAAAATATTCATAAAAAAACTAAATTAAGAAGTCTGATGGTGATAAAAATAAAAGACAAAAAAAAGACAGATTTAAGAATGATCCAATGTAAACAATGTTCTTATAAGACTGATGTATGTATAGATGAAAAAAATAAGTACATAACTCTCTGAGTTCTTATCGACTCCTTTCATATCCTATCAAAATTCAAGAGGTTTCTTCATCTACTTTAACTATTGAATGAAAATGATAGCCTAGTAATCTTGGTAGGGGTTTCATGAGATTAAAAAAGTTGAATTTATATAGATAGAATAGAAGGAATATCAAAAGATATATTAAAGTTTTAGTTTAAATATTTGGAGGTTATGAATATGAAAAGATGAGAGTTATGAATATTAAGAGTATAAAGTTGAATAAGTAATTAACAAATAATAATAAATAAATGAAGAATATGAAAAAAGAAGTTAAAATTAGCAAACCATGTAGAAAGAACAACTAAAGGTCTTATCACGTAATTAAGCGTTAATAAATTTAGATTTGTGAAGATAGAGTCATTCTTTAATAATAATCGAGAGGACATTATCAACGTGTGTCTCCATTTTGCAGATTTGCACCCTTTATATTATTAAATTCGTTATTTATCATAAAGGATAATACTTTATCCACATAAATTATATTATTCATGAGAGGGGTTAAGGAAAAAGTTATGAGAAAGAGGAAAAATATAGCAATTTAGTAAAGACTTTTTTTTTAAAAAAAAATTATAATTATTATATACATATAGATTATAGATGATAAATATTAATTAATTGGATATTTAATTAGAAATCAATCTTTAGAAGTCTAAAAGTCATTAACCTTTTAATTAAATTTATACAATCAAATATTTAAATATTTTATAACAATTTAATTTATAGGAGGGGTAAAACTGTAATTCAACTTTCAACTTTTTTTGTTGATGCTTTTAGTAATACATGATGAATTAAGAGTGCCCAGACTTGAAGCACAGTTCCACTCTGGATTTATCACTGTTTATTTATCCAAAAACACTATCCTGTTTACATTGGGAAATCAGTAGAAACAGAATGACTAAAACAGCAGTGTGTTCTAAGTTCGCATGATCGTTGAAGCCTTTACTAAGCTTATGGTACAGATAGTCTATATGCTTTATGATTAAGCAACTATGTCTGGGTCCCAAATTAGAAGTCAGGGTTGGCTTTTATTGGAGTTTGATTGTTTTTACAACTGACAGTCTGATATTAACTTATTCATAGCTTCTTTTATTTTGGCTCGTCTCTGCTTTACAAAGATTTCTTATTTGGATAGTGCAACAGCAACAACACCATACCCCATGTAACCCACAAGTGAGGTCTGGGGAGGGTAGAGACTCTGCACTATCCGTTAAGTGTAAGCATACCTTCTTGGATAGTGCAGATATTCATAAATCGCGCTCTTGCTAATGATTTTAAAAGGAAGTCGTTTTAACTGTTTATTATAGTTAGAGTTCCCTGCACTGCAAGTCTAAAAGAAGCTCTCTTCTGTTCAGGATTGTTATACTGAACATGATGAGTTTATATCGTTCTGTTGTTTGTTTATCTAATGCATTATCCTATTTACATCGAGAAACAAAAAAACAATTGAAACGAAAATGAAAGCATAACATCTTGGTGTTCTGGTTTCATCCGTTTTATGTTTCTAAGCTTGTTTTGGAAGTGACATCAACCATTTACTAGCTTCACCATTCACCTACACATCTTAGGCTTGAGTGATATTCTAAAGGCTATTTGTAAAAGAAACTGAGAGTCTAAAACATTATATCAATTTACTTTGGGGTAAATTATGTATGCCCGATTGATGAAAGAAGTTCTTGTGATGTAGAGTTGTTGCTATGTATTCTACTCCTACCCCTTCAAAACCAAAAGAACAGAGTGTTAAAAGTAGTGAAATCAGGCAACCGAGGCTAGTAAACAACAGCTCGACTTACAATCTTCTATTATTCAGGTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAATAACGTCAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTACGAATTGCGCTACTTCAACATTGCTGAGAATGAAGCAGATGAAGAAGATTAAACATGACCATTCAATGTCTCTCTTTATCTTCTTTCTTTAGTCGGCCTTCACTTTTTGATCCTTGTATCA-----TC-----ACTAATGAATCCTGTCTTCTCATTTCTAGATTTTGTTTTTGCAGTTTGCTTATCAGTAAAAGAAAACATTACATCGATACTTTGGTTTGTCTATCTTTGGGGATAATTATGAAAATGTCAATTTATCTGTATTGCCTTTCTCCTCTGGATG</genome_strand>
        <mrna_strand>CACTCACAGTAGGCCGTCGAGTTTCCTCCT........................................................................................TA-AAGAGAAATAC--AGAGCGTAAAGATGAGCCGAGCAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGTGCAAGCTTCGTCATTGACTGTTCGAAGCCAGTAGAAGACAGTATCATGGAGATTGCTTCTCTTGACAAGTTCCTTCAAGAGAGAATTAAGGTTGGTGGAAAAGCTGGTGCTCTTGGGGATTCCGTTACTGTCACTCGTGACAAGAACAAGATCACCGTCACCTGCAACTCGACTTTTTCCAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAATAACGTCAGGGATTGGCTTAGAGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAATTGCGCTACTTCAACATTGCTGAGAATGAAGCAGATGAAGAAGATTAAACATGGCCATTCAATGTCTCTCTTTATCTTC-TTCTTTAAGCGGCCTTCGTTTTTTGATCCTTATATCATCTGTTCGAGTTACTAATGAATCTTGTCTTCTCATTTCTAGATTATTGTTTTGCAGTTTGCTTATCAGTAAAAGAAAACATTACATCGATACTTTGGTTTGTTCATCTTTGGGGCAAGTTATGCAAAAGTCAATTTATCTGTATTGCATTTCTCCTCTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E746042" ref_strand="+" ref_description="SGN-E746042 [GI|47105360]">
      <seq>gaggccgtggacgtcgagtttcatcctcagaagagaaatacagagagtgtaaagatgagccgagcagcagcagcagcagtgaagggcgggaagaagaagggggcaagcttcgtcattgactgttcgaagccggtagaagacagtatcatggagattgcttctcttgacaagttccttcaagagaggattaaggttggtggaaaagctggtgctcttggggattccgttactgttactcgtgacaagaacaagatcaccgtcacatgcaactcaactttttccaagaggtacctcaaataccttgtcaaaaagtacttgaagaaaaataacgtcagggattggcttagggtgattgcttccaacaaggacaggaatgtttacgaattgcgctacttcaacattgctgagaatgaagcagatgaagaagattaaacatgaccattcaatgtctctctttatcttctttctttagtcggccttcactttttgatccttgtatcatcactaatgaatcctgtcttctcatttctagattttgtttttgcagtttgcttatcagtaaaagaaaacattacatcgatactttggtttgtctatctttggggataattatgaaaatgtcaatttatctgcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="+" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="111290" stop="115103"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111589" g_stop="111615" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111616" i_stop="111703" i_length="88">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111704" g_stop="111963" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="287" r_length="260" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111964" i_stop="114456" i_length="2493">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114457" g_stop="114800" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="631" r_length="344" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="634" polyA_stop="648"/>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="+" ref_id="SGN-E746042" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746042" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111589" e_stop="111615"/>
          <exon e_start="111704" e_stop="111963"/>
          <exon e_start="114457" e_stop="114800"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGGCCGTGGACGTCGAGTTTCATCCTGTACGTATGCTCCTACTCTTTTCTTCTCTGTTTCTCTGACGATGAGATTTGTTCTTGAGATCTGATAATTTTTGCTTTTGAATGCCAGCAGAAGAGAAATACAGAGAGTGTAAAGATGAGCCGAGCAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATTGACTGTTCGAAGCCGGTAGAAGACAGTATCATGGAGATTGCTTCTCTTGACAAGTTCCTTCAAGAGAGGATTAAGGTTGGTGGAAAAGCTGGTGCTCTTGGGGATTCCGTTACTGTTACTCGTGACAAGAACAAGATCACCGTCACCTGCAACTCAACTTTTTCCAAGAGGTACTGATTCTATTGCCTCATTTTCAGTTGTGTTTATTTGAAAAAAAAATGATTCTAGAAACTAAACTCTACTCGTAGATCATAAATTACTAGCTACAGTCGACTTCTATTATAGTTTGATAACGATTACACTTACCGATTGACAGTAACTTATCGCAGACCTATTCGATTATCCAGTGAGTTCTGTGTAGTCATTCACACATTAAGCTTTGACTCAGTTGGTAATCAGATAAATATATAGTTAATTTGATAAGTTTTTGATATTTGAATGATTAAATCCGACAAACAGAACCATTTTAGACCTACTCCTGTAGTTAAATGAACTATTTATTTAGGACATTATTCTCTCTTTTTTGGTGTTTATTTTTGTACTAGAGGACGGGCTTCGCACGTGTATTTTATGTGAATTTTTATAGATATGTTATAATGATAAAAATTTCATGGAAATATATATGTAAATTAATGAATAATATAATGTAACAATTACAAAATAAGAATAAAGACTTACGCAATAAAATATTCATAAAAAAACTAAATTAAGAAGTCTGATGGTGATAAAAATAAAAGACAAAAAAAAGACAGATTTAAGAATGATCCAATGTAAACAATGTTCTTATAAGACTGATGTATGTATAGATGAAAAAAATAAGTACATAACTCTCTGAGTTCTTATCGACTCCTTTCATATCCTATCAAAATTCAAGAGGTTTCTTCATCTACTTTAACTATTGAATGAAAATGATAGCCTAGTAATCTTGGTAGGGGTTTCATGAGATTAAAAAAGTTGAATTTATATAGATAGAATAGAAGGAATATCAAAAGATATATTAAAGTTTTAGTTTAAATATTTGGAGGTTATGAATATGAAAAGATGAGAGTTATGAATATTAAGAGTATAAAGTTGAATAAGTAATTAACAAATAATAATAAATAAATGAAGAATATGAAAAAAGAAGTTAAAATTAGCAAACCATGTAGAAAGAACAACTAAAGGTCTTATCACGTAATTAAGCGTTAATAAATTTAGATTTGTGAAGATAGAGTCATTCTTTAATAATAATCGAGAGGACATTATCAACGTGTGTCTCCATTTTGCAGATTTGCACCCTTTATATTATTAAATTCGTTATTTATCATAAAGGATAATACTTTATCCACATAAATTATATTATTCATGAGAGGGGTTAAGGAAAAAGTTATGAGAAAGAGGAAAAATATAGCAATTTAGTAAAGACTTTTTTTTTAAAAAAAAATTATAATTATTATATACATATAGATTATAGATGATAAATATTAATTAATTGGATATTTAATTAGAAATCAATCTTTAGAAGTCTAAAAGTCATTAACCTTTTAATTAAATTTATACAATCAAATATTTAAATATTTTATAACAATTTAATTTATAGGAGGGGTAAAACTGTAATTCAACTTTCAACTTTTTTTGTTGATGCTTTTAGTAATACATGATGAATTAAGAGTGCCCAGACTTGAAGCACAGTTCCACTCTGGATTTATCACTGTTTATTTATCCAAAAACACTATCCTGTTTACATTGGGAAATCAGTAGAAACAGAATGACTAAAACAGCAGTGTGTTCTAAGTTCGCATGATCGTTGAAGCCTTTACTAAGCTTATGGTACAGATAGTCTATATGCTTTATGATTAAGCAACTATGTCTGGGTCCCAAATTAGAAGTCAGGGTTGGCTTTTATTGGAGTTTGATTGTTTTTACAACTGACAGTCTGATATTAACTTATTCATAGCTTCTTTTATTTTGGCTCGTCTCTGCTTTACAAAGATTTCTTATTTGGATAGTGCAACAGCAACAACACCATACCCCATGTAACCCACAAGTGAGGTCTGGGGAGGGTAGAGACTCTGCACTATCCGTTAAGTGTAAGCATACCTTCTTGGATAGTGCAGATATTCATAAATCGCGCTCTTGCTAATGATTTTAAAAGGAAGTCGTTTTAACTGTTTATTATAGTTAGAGTTCCCTGCACTGCAAGTCTAAAAGAAGCTCTCTTCTGTTCAGGATTGTTATACTGAACATGATGAGTTTATATCGTTCTGTTGTTTGTTTATCTAATGCATTATCCTATTTACATCGAGAAACAAAAAAACAATTGAAACGAAAATGAAAGCATAACATCTTGGTGTTCTGGTTTCATCCGTTTTATGTTTCTAAGCTTGTTTTGGAAGTGACATCAACCATTTACTAGCTTCACCATTCACCTACACATCTTAGGCTTGAGTGATATTCTAAAGGCTATTTGTAAAAGAAACTGAGAGTCTAAAACATTATATCAATTTACTTTGGGGTAAATTATGTATGCCCGATTGATGAAAGAAGTTCTTGTGATGTAGAGTTGTTGCTATGTATTCTACTCCTACCCCTTCAAAACCAAAAGAACAGAGTGTTAAAAGTAGTGAAATCAGGCAACCGAGGCTAGTAAACAACAGCTCGACTTACAATCTTCTATTATTCAGGTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAATAACGTCAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTACGAATTGCGCTACTTCAACATTGCTGAGAATGAAGCAGATGAAGAAGATTAAACATGACCATTCAATGTCTCTCTTTATCTTCTTTCTTTAGTCGGCCTTCACTTTTTGATCCTTGTATCATCACTAATGAATCCTGTCTTCTCATTTCTAGATTTTGTTTTTGCAGTTTGCTTATCAGTAAAAGAAAACATTACATCGATACTTTGGTTTGTCTATCTTTGGGGATAATTATGAAAATGTCAATTTATCT</genome_strand>
        <mrna_strand>GAGGCCGTGGACGTCGAGTTTCATCCT........................................................................................CAGAAGAGAAATACAGAGAGTGTAAAGATGAGCCGAGCAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATTGACTGTTCGAAGCCGGTAGAAGACAGTATCATGGAGATTGCTTCTCTTGACAAGTTCCTTCAAGAGAGGATTAAGGTTGGTGGAAAAGCTGGTGCTCTTGGGGATTCCGTTACTGTTACTCGTGACAAGAACAAGATCACCGTCACATGCAACTCAACTTTTTCCAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAATAACGTCAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTACGAATTGCGCTACTTCAACATTGCTGAGAATGAAGCAGATGAAGAAGATTAAACATGACCATTCAATGTCTCTCTTTATCTTCTTTCTTTAGTCGGCCTTCACTTTTTGATCCTTGTATCATCACTAATGAATCCTGTCTTCTCATTTCTAGATTTTGTTTTTGCAGTTTGCTTATCAGTAAAAGAAAACATTACATCGATACTTTGGTTTGTCTATCTTTGGGGATAATTATGAAAATGTCAATTTATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733085" ref_strand="+" ref_description="SGN-E733085 [LB03DG04]">
      <seq>cgcgtgtttcatcctaagagaaatacagagagtgtaaagatgagccgagcagtagcagcagcagtgaagggtggaaagaagaagggggcgagcttcgtcattgactgttcgaagccggtagaagacagtatcatggagattgcttctcttgacaagttccttcaagagaggattaaggttggtggaaaagctggtgctcttggggattccgttactgttactcgtgacaagaacaagatcaccgtcacctgcaactcagctttttccaagaggtacctcaaataccttgtcaaaaagtacttgaagaaaaataacgtcagggattggcttagggtgattgcttccaacaaggacaggaatgtttacgaattgcgctacttcaacattgctgagaatgaagcagatgaagaagattaaacatgaccattcaatgtctctctttatcttcttctttagtcggccttcactttttgatccttgtatcatctgttcgagttactaatgaatcctgtcttctcatttctagattttgtttttgcagtttgcttatcagtaaaagaaaacattacatcgatactttggtttgtctatctttggggttaattatgaaaatgtcaatttatctgtattgcctttctcctctggatgatctcaagacatatgtaagattaaaatagatataatatctcataattaattaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="+" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="111401" stop="115174"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111600" g_stop="111615" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="0.875"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111616" i_stop="111706" i_length="91">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.808" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111707" g_stop="111963" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="272" r_length="257" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111964" i_stop="114456" i_length="2493">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114457" g_stop="114871" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="696" r_length="424" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="700" polyA_stop="713"/>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="+" ref_id="SGN-E733085" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733085" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111600" e_stop="111615"/>
          <exon e_start="111707" e_stop="111963"/>
          <exon e_start="114457" e_stop="114871"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTCGAGTTTCATCCTGTACGTATGCTCCTACTCTTTTCTTCTCTGTTTCTCTGACGATGAGATTTGTTCTTGAGATCTGATAATTTTTGCTTTTGAATGCCAGCAGAAGAGAAATACAGAGAGTGTAAAGATGAGCCGAGCAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATTGACTGTTCGAAGCCGGTAGAAGACAGTATCATGGAGATTGCTTCTCTTGACAAGTTCCTTCAAGAGAGGATTAAGGTTGGTGGAAAAGCTGGTGCTCTTGGGGATTCCGTTACTGTTACTCGTGACAAGAACAAGATCACCGTCACCTGCAACTCAACTTTTTCCAAGAGGTACTGATTCTATTGCCTCATTTTCAGTTGTGTTTATTTGAAAAAAAAATGATTCTAGAAACTAAACTCTACTCGTAGATCATAAATTACTAGCTACAGTCGACTTCTATTATAGTTTGATAACGATTACACTTACCGATTGACAGTAACTTATCGCAGACCTATTCGATTATCCAGTGAGTTCTGTGTAGTCATTCACACATTAAGCTTTGACTCAGTTGGTAATCAGATAAATATATAGTTAATTTGATAAGTTTTTGATATTTGAATGATTAAATCCGACAAACAGAACCATTTTAGACCTACTCCTGTAGTTAAATGAACTATTTATTTAGGACATTATTCTCTCTTTTTTGGTGTTTATTTTTGTACTAGAGGACGGGCTTCGCACGTGTATTTTATGTGAATTTTTATAGATATGTTATAATGATAAAAATTTCATGGAAATATATATGTAAATTAATGAATAATATAATGTAACAATTACAAAATAAGAATAAAGACTTACGCAATAAAATATTCATAAAAAAACTAAATTAAGAAGTCTGATGGTGATAAAAATAAAAGACAAAAAAAAGACAGATTTAAGAATGATCCAATGTAAACAATGTTCTTATAAGACTGATGTATGTATAGATGAAAAAAATAAGTACATAACTCTCTGAGTTCTTATCGACTCCTTTCATATCCTATCAAAATTCAAGAGGTTTCTTCATCTACTTTAACTATTGAATGAAAATGATAGCCTAGTAATCTTGGTAGGGGTTTCATGAGATTAAAAAAGTTGAATTTATATAGATAGAATAGAAGGAATATCAAAAGATATATTAAAGTTTTAGTTTAAATATTTGGAGGTTATGAATATGAAAAGATGAGAGTTATGAATATTAAGAGTATAAAGTTGAATAAGTAATTAACAAATAATAATAAATAAATGAAGAATATGAAAAAAGAAGTTAAAATTAGCAAACCATGTAGAAAGAACAACTAAAGGTCTTATCACGTAATTAAGCGTTAATAAATTTAGATTTGTGAAGATAGAGTCATTCTTTAATAATAATCGAGAGGACATTATCAACGTGTGTCTCCATTTTGCAGATTTGCACCCTTTATATTATTAAATTCGTTATTTATCATAAAGGATAATACTTTATCCACATAAATTATATTATTCATGAGAGGGGTTAAGGAAAAAGTTATGAGAAAGAGGAAAAATATAGCAATTTAGTAAAGACTTTTTTTTTAAAAAAAAATTATAATTATTATATACATATAGATTATAGATGATAAATATTAATTAATTGGATATTTAATTAGAAATCAATCTTTAGAAGTCTAAAAGTCATTAACCTTTTAATTAAATTTATACAATCAAATATTTAAATATTTTATAACAATTTAATTTATAGGAGGGGTAAAACTGTAATTCAACTTTCAACTTTTTTTGTTGATGCTTTTAGTAATACATGATGAATTAAGAGTGCCCAGACTTGAAGCACAGTTCCACTCTGGATTTATCACTGTTTATTTATCCAAAAACACTATCCTGTTTACATTGGGAAATCAGTAGAAACAGAATGACTAAAACAGCAGTGTGTTCTAAGTTCGCATGATCGTTGAAGCCTTTACTAAGCTTATGGTACAGATAGTCTATATGCTTTATGATTAAGCAACTATGTCTGGGTCCCAAATTAGAAGTCAGGGTTGGCTTTTATTGGAGTTTGATTGTTTTTACAACTGACAGTCTGATATTAACTTATTCATAGCTTCTTTTATTTTGGCTCGTCTCTGCTTTACAAAGATTTCTTATTTGGATAGTGCAACAGCAACAACACCATACCCCATGTAACCCACAAGTGAGGTCTGGGGAGGGTAGAGACTCTGCACTATCCGTTAAGTGTAAGCATACCTTCTTGGATAGTGCAGATATTCATAAATCGCGCTCTTGCTAATGATTTTAAAAGGAAGTCGTTTTAACTGTTTATTATAGTTAGAGTTCCCTGCACTGCAAGTCTAAAAGAAGCTCTCTTCTGTTCAGGATTGTTATACTGAACATGATGAGTTTATATCGTTCTGTTGTTTGTTTATCTAATGCATTATCCTATTTACATCGAGAAACAAAAAAACAATTGAAACGAAAATGAAAGCATAACATCTTGGTGTTCTGGTTTCATCCGTTTTATGTTTCTAAGCTTGTTTTGGAAGTGACATCAACCATTTACTAGCTTCACCATTCACCTACACATCTTAGGCTTGAGTGATATTCTAAAGGCTATTTGTAAAAGAAACTGAGAGTCTAAAACATTATATCAATTTACTTTGGGGTAAATTATGTATGCCCGATTGATGAAAGAAGTTCTTGTGATGTAGAGTTGTTGCTATGTATTCTACTCCTACCCCTTCAAAACCAAAAGAACAGAGTGTTAAAAGTAGTGAAATCAGGCAACCGAGGCTAGTAAACAACAGCTCGACTTACAATCTTCTATTATTCAGGTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAATAACGTCAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTACGAATTGCGCTACTTCAACATTGCTGAGAATGAAGCAGATGAAGAAGATTAAACATGACCATTCAATGTCTCTCTTTATCTTCTTTCTTTAGTCGGCCTTCACTTTTTGATCCTTGTATCA-----TC-----ACTAATGAATCCTGTCTTCTCATTTCTAGATTTTGTTTTTGCAGTTTGCTTATCAGTAAAAGAAAACATTACATCGATACTTTGGTTTGTCTATCTTTGGGGATAATTATGAAAATGTCAATTTATCTGTATTGCCTTTCTCCTCTGGATGATCTCAAGACATATATAAGATTAAAATAGATATAATATCTCATAATTA</genome_strand>
        <mrna_strand>CG-CGTGTTTCATCCT...........................................................................................AAGAGAAATACAGAGAGTGTAAAGATGAGCCGAGCAGTAGCAGCAGCAGTGAAGGGTGGAAAGAAGAAGGGGGCGAGCTTCGTCATTGACTGTTCGAAGCCGGTAGAAGACAGTATCATGGAGATTGCTTCTCTTGACAAGTTCCTTCAAGAGAGGATTAAGGTTGGTGGAAAAGCTGGTGCTCTTGGGGATTCCGTTACTGTTACTCGTGACAAGAACAAGATCACCGTCACCTGCAACTCAGCTTTTTCCAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAATAACGTCAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTACGAATTGCGCTACTTCAACATTGCTGAGAATGAAGCAGATGAAGAAGATTAAACATGACCATTCAATGTCTCTCTTTATCTTC-TTCTTTAGTCGGCCTTCACTTTTTGATCCTTGTATCATCTGTTCGAGTTACTAATGAATCCTGTCTTCTCATTTCTAGATTTTGTTTTTGCAGTTTGCTTATCAGTAAAAGAAAACATTACATCGATACTTTGGTTTGTCTATCTTTGGGGTTAATTATGAAAATGTCAATTTATCTGTATTGCCTTTCTCCTCTGGATGATCTCAAGACATATGTAAGATTAAAATAGATATAATATCTCATAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E306494" ref_strand="+" ref_description="SGN-E306494 [cLEX-13-E16]">
      <seq>tcgagtttcatcctcagaagagaaatacagagagtgtaaagatgagccgagcagcagcagcagcagtgaagggcgggaagaagaagggggcaagcttcgtcattgactgttcgaagccggtagaagacagtatcatggagattgcttctcttgacaagttccttcaagagaggattaaggttggtggaaaagctggtgctcttggggattccgttactgttactcgtgacaagaacaagatcaccgtcacctgcaactcaactttttccaagaggtacctcaaataccttgtcaaaaagtacttgaagaaaaataacgtcagggattggcttagggtgattgcttccaacaaggacaggaatgtttacgaattgcgctacttcaacattgctgagaatgaagcagatgaagaagattaaacatgaccattcaatgtctctctttatcttctttctttagtcggccttcactttttgatccttgtatcatcactaatgaatcctgtcttctcatttctagattttgtttttgcagtttgcttatcagtaaaagaaaacattacatcgatacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="+" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="111404" stop="115055"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111602" g_stop="111615" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111616" i_stop="111703" i_length="88">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111704" g_stop="111963" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="274" r_length="260" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111964" i_stop="114456" i_length="2493">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114457" g_stop="114755" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="573" r_length="299" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="+" ref_id="SGN-E306494" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306494" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111602" e_stop="111615"/>
          <exon e_start="111704" e_stop="111963"/>
          <exon e_start="114457" e_stop="114755"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAGTTTCATCCTGTACGTATGCTCCTACTCTTTTCTTCTCTGTTTCTCTGACGATGAGATTTGTTCTTGAGATCTGATAATTTTTGCTTTTGAATGCCAGCAGAAGAGAAATACAGAGAGTGTAAAGATGAGCCGAGCAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATTGACTGTTCGAAGCCGGTAGAAGACAGTATCATGGAGATTGCTTCTCTTGACAAGTTCCTTCAAGAGAGGATTAAGGTTGGTGGAAAAGCTGGTGCTCTTGGGGATTCCGTTACTGTTACTCGTGACAAGAACAAGATCACCGTCACCTGCAACTCAACTTTTTCCAAGAGGTACTGATTCTATTGCCTCATTTTCAGTTGTGTTTATTTGAAAAAAAAATGATTCTAGAAACTAAACTCTACTCGTAGATCATAAATTACTAGCTACAGTCGACTTCTATTATAGTTTGATAACGATTACACTTACCGATTGACAGTAACTTATCGCAGACCTATTCGATTATCCAGTGAGTTCTGTGTAGTCATTCACACATTAAGCTTTGACTCAGTTGGTAATCAGATAAATATATAGTTAATTTGATAAGTTTTTGATATTTGAATGATTAAATCCGACAAACAGAACCATTTTAGACCTACTCCTGTAGTTAAATGAACTATTTATTTAGGACATTATTCTCTCTTTTTTGGTGTTTATTTTTGTACTAGAGGACGGGCTTCGCACGTGTATTTTATGTGAATTTTTATAGATATGTTATAATGATAAAAATTTCATGGAAATATATATGTAAATTAATGAATAATATAATGTAACAATTACAAAATAAGAATAAAGACTTACGCAATAAAATATTCATAAAAAAACTAAATTAAGAAGTCTGATGGTGATAAAAATAAAAGACAAAAAAAAGACAGATTTAAGAATGATCCAATGTAAACAATGTTCTTATAAGACTGATGTATGTATAGATGAAAAAAATAAGTACATAACTCTCTGAGTTCTTATCGACTCCTTTCATATCCTATCAAAATTCAAGAGGTTTCTTCATCTACTTTAACTATTGAATGAAAATGATAGCCTAGTAATCTTGGTAGGGGTTTCATGAGATTAAAAAAGTTGAATTTATATAGATAGAATAGAAGGAATATCAAAAGATATATTAAAGTTTTAGTTTAAATATTTGGAGGTTATGAATATGAAAAGATGAGAGTTATGAATATTAAGAGTATAAAGTTGAATAAGTAATTAACAAATAATAATAAATAAATGAAGAATATGAAAAAAGAAGTTAAAATTAGCAAACCATGTAGAAAGAACAACTAAAGGTCTTATCACGTAATTAAGCGTTAATAAATTTAGATTTGTGAAGATAGAGTCATTCTTTAATAATAATCGAGAGGACATTATCAACGTGTGTCTCCATTTTGCAGATTTGCACCCTTTATATTATTAAATTCGTTATTTATCATAAAGGATAATACTTTATCCACATAAATTATATTATTCATGAGAGGGGTTAAGGAAAAAGTTATGAGAAAGAGGAAAAATATAGCAATTTAGTAAAGACTTTTTTTTTAAAAAAAAATTATAATTATTATATACATATAGATTATAGATGATAAATATTAATTAATTGGATATTTAATTAGAAATCAATCTTTAGAAGTCTAAAAGTCATTAACCTTTTAATTAAATTTATACAATCAAATATTTAAATATTTTATAACAATTTAATTTATAGGAGGGGTAAAACTGTAATTCAACTTTCAACTTTTTTTGTTGATGCTTTTAGTAATACATGATGAATTAAGAGTGCCCAGACTTGAAGCACAGTTCCACTCTGGATTTATCACTGTTTATTTATCCAAAAACACTATCCTGTTTACATTGGGAAATCAGTAGAAACAGAATGACTAAAACAGCAGTGTGTTCTAAGTTCGCATGATCGTTGAAGCCTTTACTAAGCTTATGGTACAGATAGTCTATATGCTTTATGATTAAGCAACTATGTCTGGGTCCCAAATTAGAAGTCAGGGTTGGCTTTTATTGGAGTTTGATTGTTTTTACAACTGACAGTCTGATATTAACTTATTCATAGCTTCTTTTATTTTGGCTCGTCTCTGCTTTACAAAGATTTCTTATTTGGATAGTGCAACAGCAACAACACCATACCCCATGTAACCCACAAGTGAGGTCTGGGGAGGGTAGAGACTCTGCACTATCCGTTAAGTGTAAGCATACCTTCTTGGATAGTGCAGATATTCATAAATCGCGCTCTTGCTAATGATTTTAAAAGGAAGTCGTTTTAACTGTTTATTATAGTTAGAGTTCCCTGCACTGCAAGTCTAAAAGAAGCTCTCTTCTGTTCAGGATTGTTATACTGAACATGATGAGTTTATATCGTTCTGTTGTTTGTTTATCTAATGCATTATCCTATTTACATCGAGAAACAAAAAAACAATTGAAACGAAAATGAAAGCATAACATCTTGGTGTTCTGGTTTCATCCGTTTTATGTTTCTAAGCTTGTTTTGGAAGTGACATCAACCATTTACTAGCTTCACCATTCACCTACACATCTTAGGCTTGAGTGATATTCTAAAGGCTATTTGTAAAAGAAACTGAGAGTCTAAAACATTATATCAATTTACTTTGGGGTAAATTATGTATGCCCGATTGATGAAAGAAGTTCTTGTGATGTAGAGTTGTTGCTATGTATTCTACTCCTACCCCTTCAAAACCAAAAGAACAGAGTGTTAAAAGTAGTGAAATCAGGCAACCGAGGCTAGTAAACAACAGCTCGACTTACAATCTTCTATTATTCAGGTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAATAACGTCAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTACGAATTGCGCTACTTCAACATTGCTGAGAATGAAGCAGATGAAGAAGATTAAACATGACCATTCAATGTCTCTCTTTATCTTCTTTCTTTAGTCGGCCTTCACTTTTTGATCCTTGTATCATCACTAATGAATCCTGTCTTCTCATTTCTAGATTTTGTTTTTGCAGTTTGCTTATCAGTAAAAGAAAACATTACATCGATACTTT</genome_strand>
        <mrna_strand>TCGAGTTTCATCCT........................................................................................CAGAAGAGAAATACAGAGAGTGTAAAGATGAGCCGAGCAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATTGACTGTTCGAAGCCGGTAGAAGACAGTATCATGGAGATTGCTTCTCTTGACAAGTTCCTTCAAGAGAGGATTAAGGTTGGTGGAAAAGCTGGTGCTCTTGGGGATTCCGTTACTGTTACTCGTGACAAGAACAAGATCACCGTCACCTGCAACTCAACTTTTTCCAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAATAACGTCAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTACGAATTGCGCTACTTCAACATTGCTGAGAATGAAGCAGATGAAGAAGATTAAACATGACCATTCAATGTCTCTCTTTATCTTCTTTCTTTAGTCGGCCTTCACTTTTTGATCCTTGTATCATCACTAATGAATCCTGTCTTCTCATTTCTAGATTTTGTTTTTGCAGTTTGCTTATCAGTAAAAGAAAACATTACATCGATACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E462945" ref_strand="+" ref_description="SGN-E462945 [cPRO-13-M1]">
      <seq>gagtttcttccttaaagagaaatacagagcgtaaagatgagccgagcagcagcagcagcagtgaagggcggtaagaagaagggtgcaagcttcgtcattgactgttcgaagccagtagaagacagtatcatggagattgcttctcttgacaagttccttcaagagaggattaaggttggtggaaaagctggtgctcttggggattccgttactatcactcgtgacaagaacaagatcaccgtcacctgcaactcgactttttccaagaggtatctcaagtaccttgtcaaaaagtacttgaagaaaaataacgtcagggattggcttagggtgattgcctccaacaaggacaggaatgtttacgaattgcgctacttcaacattgctgagaatgaagcagatgaagaagattaaacatggccattcaatgtctctctttatctttttctttagtcggccttcgttttttgatccttatatcatctgttcgagttactaatgaatcttgtcttctcatttctagattattgttttgcagtttgcttatcagtaaaagaaaacattacatcgatactttggtttgtttnaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="+" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="111407" stop="115064"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111604" g_stop="111615" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="0.917"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111616" i_stop="111703" i_length="88">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.917" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111704" g_stop="111963" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="269" r_length="257" r_score="0.958"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111964" i_stop="114456" i_length="2493">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114457" g_stop="114764" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="586" r_length="317" r_score="0.893"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="114765" i_stop="115017" i_length="253">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="115018" g_stop="115028" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="587" r_stop="597" r_length="11" r_score="0.545"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="+" ref_id="SGN-E462945" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E462945" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111604" e_stop="111615"/>
          <exon e_start="111704" e_stop="111963"/>
          <exon e_start="114457" e_stop="114764"/>
          <exon e_start="115018" e_stop="115028"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTTTCATCCTGTACGTATGCTCCTACTCTTTTCTTCTCTGTTTCTCTGACGATGAGATTTGTTCTTGAGATCTGATAATTTTTGCTTTTGAATGCCAGCAGAAGAGAAATACAGAGAGTGTAAAGATGAGCCGAGCAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATTGACTGTTCGAAGCCGGTAGAAGACAGTATCATGGAGATTGCTTCTCTTGACAAGTTCCTTCAAGAGAGGATTAAGGTTGGTGGAAAAGCTGGTGCTCTTGGGGATTCCGTTACTGTTACTCGTGACAAGAACAAGATCACCGTCACCTGCAACTCAACTTTTTCCAAGAGGTACTGATTCTATTGCCTCATTTTCAGTTGTGTTTATTTGAAAAAAAAATGATTCTAGAAACTAAACTCTACTCGTAGATCATAAATTACTAGCTACAGTCGACTTCTATTATAGTTTGATAACGATTACACTTACCGATTGACAGTAACTTATCGCAGACCTATTCGATTATCCAGTGAGTTCTGTGTAGTCATTCACACATTAAGCTTTGACTCAGTTGGTAATCAGATAAATATATAGTTAATTTGATAAGTTTTTGATATTTGAATGATTAAATCCGACAAACAGAACCATTTTAGACCTACTCCTGTAGTTAAATGAACTATTTATTTAGGACATTATTCTCTCTTTTTTGGTGTTTATTTTTGTACTAGAGGACGGGCTTCGCACGTGTATTTTATGTGAATTTTTATAGATATGTTATAATGATAAAAATTTCATGGAAATATATATGTAAATTAATGAATAATATAATGTAACAATTACAAAATAAGAATAAAGACTTACGCAATAAAATATTCATAAAAAAACTAAATTAAGAAGTCTGATGGTGATAAAAATAAAAGACAAAAAAAAGACAGATTTAAGAATGATCCAATGTAAACAATGTTCTTATAAGACTGATGTATGTATAGATGAAAAAAATAAGTACATAACTCTCTGAGTTCTTATCGACTCCTTTCATATCCTATCAAAATTCAAGAGGTTTCTTCATCTACTTTAACTATTGAATGAAAATGATAGCCTAGTAATCTTGGTAGGGGTTTCATGAGATTAAAAAAGTTGAATTTATATAGATAGAATAGAAGGAATATCAAAAGATATATTAAAGTTTTAGTTTAAATATTTGGAGGTTATGAATATGAAAAGATGAGAGTTATGAATATTAAGAGTATAAAGTTGAATAAGTAATTAACAAATAATAATAAATAAATGAAGAATATGAAAAAAGAAGTTAAAATTAGCAAACCATGTAGAAAGAACAACTAAAGGTCTTATCACGTAATTAAGCGTTAATAAATTTAGATTTGTGAAGATAGAGTCATTCTTTAATAATAATCGAGAGGACATTATCAACGTGTGTCTCCATTTTGCAGATTTGCACCCTTTATATTATTAAATTCGTTATTTATCATAAAGGATAATACTTTATCCACATAAATTATATTATTCATGAGAGGGGTTAAGGAAAAAGTTATGAGAAAGAGGAAAAATATAGCAATTTAGTAAAGACTTTTTTTTTAAAAAAAAATTATAATTATTATATACATATAGATTATAGATGATAAATATTAATTAATTGGATATTTAATTAGAAATCAATCTTTAGAAGTCTAAAAGTCATTAACCTTTTAATTAAATTTATACAATCAAATATTTAAATATTTTATAACAATTTAATTTATAGGAGGGGTAAAACTGTAATTCAACTTTCAACTTTTTTTGTTGATGCTTTTAGTAATACATGATGAATTAAGAGTGCCCAGACTTGAAGCACAGTTCCACTCTGGATTTATCACTGTTTATTTATCCAAAAACACTATCCTGTTTACATTGGGAAATCAGTAGAAACAGAATGACTAAAACAGCAGTGTGTTCTAAGTTCGCATGATCGTTGAAGCCTTTACTAAGCTTATGGTACAGATAGTCTATATGCTTTATGATTAAGCAACTATGTCTGGGTCCCAAATTAGAAGTCAGGGTTGGCTTTTATTGGAGTTTGATTGTTTTTACAACTGACAGTCTGATATTAACTTATTCATAGCTTCTTTTATTTTGGCTCGTCTCTGCTTTACAAAGATTTCTTATTTGGATAGTGCAACAGCAACAACACCATACCCCATGTAACCCACAAGTGAGGTCTGGGGAGGGTAGAGACTCTGCACTATCCGTTAAGTGTAAGCATACCTTCTTGGATAGTGCAGATATTCATAAATCGCGCTCTTGCTAATGATTTTAAAAGGAAGTCGTTTTAACTGTTTATTATAGTTAGAGTTCCCTGCACTGCAAGTCTAAAAGAAGCTCTCTTCTGTTCAGGATTGTTATACTGAACATGATGAGTTTATATCGTTCTGTTGTTTGTTTATCTAATGCATTATCCTATTTACATCGAGAAACAAAAAAACAATTGAAACGAAAATGAAAGCATAACATCTTGGTGTTCTGGTTTCATCCGTTTTATGTTTCTAAGCTTGTTTTGGAAGTGACATCAACCATTTACTAGCTTCACCATTCACCTACACATCTTAGGCTTGAGTGATATTCTAAAGGCTATTTGTAAAAGAAACTGAGAGTCTAAAACATTATATCAATTTACTTTGGGGTAAATTATGTATGCCCGATTGATGAAAGAAGTTCTTGTGATGTAGAGTTGTTGCTATGTATTCTACTCCTACCCCTTCAAAACCAAAAGAACAGAGTGTTAAAAGTAGTGAAATCAGGCAACCGAGGCTAGTAAACAACAGCTCGACTTACAATCTTCTATTATTCAGGTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAATAACGTCAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTACGAATTGCGCTACTTCAACATTGCTGAGAATGAAGCAGATGAAGAAGATTAAACATGACCATTCAATGTCTCTCTTTATCTTCTTTCTTTAGTCGGCCTTCACTTTTTGATCCTTGTATCA-----TC-----ACTAATGAATCCTGTCTTCTCATTTCTAGATTTTGTTTTTGCAGTTTGCTTATCAGTAAAAGAAAACATTACATCGATACTTTGGTTTGTCTATCTTTGGGGATAATTATGAAAATGTCAATTTATCTGTATTGCCTTTCTCCTCTGGATGATCTCAAGACATATATAAGATTAAAATAGATATAATATCTCATAATTAATTCTTTTTATGTTGCACATAAATGAAAACAAATAATTTGAAGTGGAGAGAGGTTTTACACTTGCTAGGAAGAATTATATGTTATTGTATGCCTGAAAATCTGTACTGTCGACTCACATTTTTCTGTTGTTTTGAAATGTGGGCAGGGAAAGTGAAA</genome_strand>
        <mrna_strand>GAGTTTCTTCCT........................................................................................TA-AAGAGAAATACAG--AGCGTAAAGATGAGCCGAGCAGCAGCAGCAGCAGTGAAGGGCGGTAAGAAGAAGGGTGCAAGCTTCGTCATTGACTGTTCGAAGCCAGTAGAAGACAGTATCATGGAGATTGCTTCTCTTGACAAGTTCCTTCAAGAGAGGATTAAGGTTGGTGGAAAAGCTGGTGCTCTTGGGGATTCCGTTACTATCACTCGTGACAAGAACAAGATCACCGTCACCTGCAACTCGACTTTTTCCAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCTCAAGTACCTTGTCAAAAAGTACTTGAAGAAAAATAACGTCAGGGATTGGCTTAGGGTGATTGCCTCCAACAAGGACAGGAATGTTTACGAATTGCGCTACTTCAACATTGCTGAGAATGAAGCAGATGAAGAAGATTAAACATGGCCATTCAATGTCTCTCTTTATCTT-TTTCTTTAGTCGGCCTTCGTTTTTTGATCCTTATATCATCTGTTCGAGTTACTAATGAATCTTGTCTTCTCATTTCTAGATTATTGTTTTGCAGTTTGCTTATCAGTAAAAGAAAACATTACATCGATACTTTGGTTTGTTT.............................................................................................................................................................................................................................................................NAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E437671" ref_strand="+" ref_description="SGN-E437671 [cSTA-4-J17]">
      <seq>atttgaataacagcagaagagaaataagagtgtaaagatgagccgagcagcagcagcagcagcgaagggcgggaagaagaagggggcaagcttcgtcattgactgttctaagccagtggaggacagtatcatggagattggttctcttgacaagttccttcaagagagaattaaggttggtggaaaagctggtgctcttggagattccgtcactgtcagtcgtgataagaacaagatcaccgtcacttgcaactccactttctccaagaggtacctcaaataccttgtcaagaagtacttgaagaaaaataatgtcagggattggctaaaggtgattgcttccaacaaggacaggaatgtttatgagttgcgctacttcaacattgctgagaatgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="+" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="111392" stop="114884"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111691" g_stop="111963" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="270" r_length="270" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111964" i_stop="114456" i_length="2493">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114457" g_stop="114584" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="398" r_length="128" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="+" ref_id="SGN-E437671" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E437671" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111691" e_stop="111963"/>
          <exon e_start="114457" e_stop="114584"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGAATGCCAGCAGAAGAGAAATACAGAGAGTGTAAAGATGAGCCGAGCAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATTGACTGTTCGAAGCCGGTAGAAGACAGTATCATGGAGATTGCTTCTCTTGACAAGTTCCTTCAAGAGAGGATTAAGGTTGGTGGAAAAGCTGGTGCTCTTGGGGATTCCGTTACTGTTACTCGTGACAAGAACAAGATCACCGTCACCTGCAACTCAACTTTTTCCAAGAGGTACTGATTCTATTGCCTCATTTTCAGTTGTGTTTATTTGAAAAAAAAATGATTCTAGAAACTAAACTCTACTCGTAGATCATAAATTACTAGCTACAGTCGACTTCTATTATAGTTTGATAACGATTACACTTACCGATTGACAGTAACTTATCGCAGACCTATTCGATTATCCAGTGAGTTCTGTGTAGTCATTCACACATTAAGCTTTGACTCAGTTGGTAATCAGATAAATATATAGTTAATTTGATAAGTTTTTGATATTTGAATGATTAAATCCGACAAACAGAACCATTTTAGACCTACTCCTGTAGTTAAATGAACTATTTATTTAGGACATTATTCTCTCTTTTTTGGTGTTTATTTTTGTACTAGAGGACGGGCTTCGCACGTGTATTTTATGTGAATTTTTATAGATATGTTATAATGATAAAAATTTCATGGAAATATATATGTAAATTAATGAATAATATAATGTAACAATTACAAAATAAGAATAAAGACTTACGCAATAAAATATTCATAAAAAAACTAAATTAAGAAGTCTGATGGTGATAAAAATAAAAGACAAAAAAAAGACAGATTTAAGAATGATCCAATGTAAACAATGTTCTTATAAGACTGATGTATGTATAGATGAAAAAAATAAGTACATAACTCTCTGAGTTCTTATCGACTCCTTTCATATCCTATCAAAATTCAAGAGGTTTCTTCATCTACTTTAACTATTGAATGAAAATGATAGCCTAGTAATCTTGGTAGGGGTTTCATGAGATTAAAAAAGTTGAATTTATATAGATAGAATAGAAGGAATATCAAAAGATATATTAAAGTTTTAGTTTAAATATTTGGAGGTTATGAATATGAAAAGATGAGAGTTATGAATATTAAGAGTATAAAGTTGAATAAGTAATTAACAAATAATAATAAATAAATGAAGAATATGAAAAAAGAAGTTAAAATTAGCAAACCATGTAGAAAGAACAACTAAAGGTCTTATCACGTAATTAAGCGTTAATAAATTTAGATTTGTGAAGATAGAGTCATTCTTTAATAATAATCGAGAGGACATTATCAACGTGTGTCTCCATTTTGCAGATTTGCACCCTTTATATTATTAAATTCGTTATTTATCATAAAGGATAATACTTTATCCACATAAATTATATTATTCATGAGAGGGGTTAAGGAAAAAGTTATGAGAAAGAGGAAAAATATAGCAATTTAGTAAAGACTTTTTTTTTAAAAAAAAATTATAATTATTATATACATATAGATTATAGATGATAAATATTAATTAATTGGATATTTAATTAGAAATCAATCTTTAGAAGTCTAAAAGTCATTAACCTTTTAATTAAATTTATACAATCAAATATTTAAATATTTTATAACAATTTAATTTATAGGAGGGGTAAAACTGTAATTCAACTTTCAACTTTTTTTGTTGATGCTTTTAGTAATACATGATGAATTAAGAGTGCCCAGACTTGAAGCACAGTTCCACTCTGGATTTATCACTGTTTATTTATCCAAAAACACTATCCTGTTTACATTGGGAAATCAGTAGAAACAGAATGACTAAAACAGCAGTGTGTTCTAAGTTCGCATGATCGTTGAAGCCTTTACTAAGCTTATGGTACAGATAGTCTATATGCTTTATGATTAAGCAACTATGTCTGGGTCCCAAATTAGAAGTCAGGGTTGGCTTTTATTGGAGTTTGATTGTTTTTACAACTGACAGTCTGATATTAACTTATTCATAGCTTCTTTTATTTTGGCTCGTCTCTGCTTTACAAAGATTTCTTATTTGGATAGTGCAACAGCAACAACACCATACCCCATGTAACCCACAAGTGAGGTCTGGGGAGGGTAGAGACTCTGCACTATCCGTTAAGTGTAAGCATACCTTCTTGGATAGTGCAGATATTCATAAATCGCGCTCTTGCTAATGATTTTAAAAGGAAGTCGTTTTAACTGTTTATTATAGTTAGAGTTCCCTGCACTGCAAGTCTAAAAGAAGCTCTCTTCTGTTCAGGATTGTTATACTGAACATGATGAGTTTATATCGTTCTGTTGTTTGTTTATCTAATGCATTATCCTATTTACATCGAGAAACAAAAAAACAATTGAAACGAAAATGAAAGCATAACATCTTGGTGTTCTGGTTTCATCCGTTTTATGTTTCTAAGCTTGTTTTGGAAGTGACATCAACCATTTACTAGCTTCACCATTCACCTACACATCTTAGGCTTGAGTGATATTCTAAAGGCTATTTGTAAAAGAAACTGAGAGTCTAAAACATTATATCAATTTACTTTGGGGTAAATTATGTATGCCCGATTGATGAAAGAAGTTCTTGTGATGTAGAGTTGTTGCTATGTATTCTACTCCTACCCCTTCAAAACCAAAAGAACAGAGTGTTAAAAGTAGTGAAATCAGGCAACCGAGGCTAGTAAACAACAGCTCGACTTACAATCTTCTATTATTCAGGTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAATAACGTCAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTACGAATTGCGCTACTTCAACATTGCTGAGAATGAAG</genome_strand>
        <mrna_strand>ATTTGAATAACAGCAGAAGAGAAATA---AGAGTGTAAAGATGAGCCGAGCAGCAGCAGCAGCAGCGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATTGACTGTTCTAAGCCAGTGGAGGACAGTATCATGGAGATTGGTTCTCTTGACAAGTTCCTTCAAGAGAGAATTAAGGTTGGTGGAAAAGCTGGTGCTCTTGGAGATTCCGTCACTGTCAGTCGTGATAAGAACAAGATCACCGTCACTTGCAACTCCACTTTCTCCAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTCAAATACCTTGTCAAGAAGTACTTGAAGAAAAATAATGTCAGGGATTGGCTAAAGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCTGAGAATGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353870" ref_strand="+" ref_description="SGN-E353870 [cTOS-10-C3]">
      <seq>agaaatacagagagtgtaaagatgagccgagcagcagcagcagcagtgaagggcgggaagaagaagggggcaagcttcgtcattgactgttcgaagccggtagaagacagtatcatggagattgcttctcttgacaagttccttcaagagaggattaaggttggtggaaaagctggtgctcttggggattccgttactgttactcgtgacaagaacaagatcaccgtcacctgcaactcaactttttccaagaggtacctcaaataccttgtcaaaaagtacttgaagaaaaataacgtcagggattggcttagggtgattgcttccaacaaggacaggaatgtttacgaattgcgctacttcaacattgctgagaatgaagcagatgaagaagattaaacatgaccattcaatgtctctctttatcttctttctttagtcggccttcactttttgatccttgtatcatcactaatgaatcctgtcttctcatttctagattttgtttttgcagtttgcttatcagtaaaagaaaacattacatcgatactttggtttgtctatctttggggataattatgaaaatgtcaatttatctgtattgccttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="+" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="111410" stop="115111"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111710" g_stop="111963" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111964" i_stop="114456" i_length="2493">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114457" g_stop="114811" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="609" r_length="355" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="+" ref_id="SGN-E353870" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353870" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111710" e_stop="111963"/>
          <exon e_start="114457" e_stop="114811"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATACAGAGAGTGTAAAGATGAGCCGAGCAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATTGACTGTTCGAAGCCGGTAGAAGACAGTATCATGGAGATTGCTTCTCTTGACAAGTTCCTTCAAGAGAGGATTAAGGTTGGTGGAAAAGCTGGTGCTCTTGGGGATTCCGTTACTGTTACTCGTGACAAGAACAAGATCACCGTCACCTGCAACTCAACTTTTTCCAAGAGGTACTGATTCTATTGCCTCATTTTCAGTTGTGTTTATTTGAAAAAAAAATGATTCTAGAAACTAAACTCTACTCGTAGATCATAAATTACTAGCTACAGTCGACTTCTATTATAGTTTGATAACGATTACACTTACCGATTGACAGTAACTTATCGCAGACCTATTCGATTATCCAGTGAGTTCTGTGTAGTCATTCACACATTAAGCTTTGACTCAGTTGGTAATCAGATAAATATATAGTTAATTTGATAAGTTTTTGATATTTGAATGATTAAATCCGACAAACAGAACCATTTTAGACCTACTCCTGTAGTTAAATGAACTATTTATTTAGGACATTATTCTCTCTTTTTTGGTGTTTATTTTTGTACTAGAGGACGGGCTTCGCACGTGTATTTTATGTGAATTTTTATAGATATGTTATAATGATAAAAATTTCATGGAAATATATATGTAAATTAATGAATAATATAATGTAACAATTACAAAATAAGAATAAAGACTTACGCAATAAAATATTCATAAAAAAACTAAATTAAGAAGTCTGATGGTGATAAAAATAAAAGACAAAAAAAAGACAGATTTAAGAATGATCCAATGTAAACAATGTTCTTATAAGACTGATGTATGTATAGATGAAAAAAATAAGTACATAACTCTCTGAGTTCTTATCGACTCCTTTCATATCCTATCAAAATTCAAGAGGTTTCTTCATCTACTTTAACTATTGAATGAAAATGATAGCCTAGTAATCTTGGTAGGGGTTTCATGAGATTAAAAAAGTTGAATTTATATAGATAGAATAGAAGGAATATCAAAAGATATATTAAAGTTTTAGTTTAAATATTTGGAGGTTATGAATATGAAAAGATGAGAGTTATGAATATTAAGAGTATAAAGTTGAATAAGTAATTAACAAATAATAATAAATAAATGAAGAATATGAAAAAAGAAGTTAAAATTAGCAAACCATGTAGAAAGAACAACTAAAGGTCTTATCACGTAATTAAGCGTTAATAAATTTAGATTTGTGAAGATAGAGTCATTCTTTAATAATAATCGAGAGGACATTATCAACGTGTGTCTCCATTTTGCAGATTTGCACCCTTTATATTATTAAATTCGTTATTTATCATAAAGGATAATACTTTATCCACATAAATTATATTATTCATGAGAGGGGTTAAGGAAAAAGTTATGAGAAAGAGGAAAAATATAGCAATTTAGTAAAGACTTTTTTTTTAAAAAAAAATTATAATTATTATATACATATAGATTATAGATGATAAATATTAATTAATTGGATATTTAATTAGAAATCAATCTTTAGAAGTCTAAAAGTCATTAACCTTTTAATTAAATTTATACAATCAAATATTTAAATATTTTATAACAATTTAATTTATAGGAGGGGTAAAACTGTAATTCAACTTTCAACTTTTTTTGTTGATGCTTTTAGTAATACATGATGAATTAAGAGTGCCCAGACTTGAAGCACAGTTCCACTCTGGATTTATCACTGTTTATTTATCCAAAAACACTATCCTGTTTACATTGGGAAATCAGTAGAAACAGAATGACTAAAACAGCAGTGTGTTCTAAGTTCGCATGATCGTTGAAGCCTTTACTAAGCTTATGGTACAGATAGTCTATATGCTTTATGATTAAGCAACTATGTCTGGGTCCCAAATTAGAAGTCAGGGTTGGCTTTTATTGGAGTTTGATTGTTTTTACAACTGACAGTCTGATATTAACTTATTCATAGCTTCTTTTATTTTGGCTCGTCTCTGCTTTACAAAGATTTCTTATTTGGATAGTGCAACAGCAACAACACCATACCCCATGTAACCCACAAGTGAGGTCTGGGGAGGGTAGAGACTCTGCACTATCCGTTAAGTGTAAGCATACCTTCTTGGATAGTGCAGATATTCATAAATCGCGCTCTTGCTAATGATTTTAAAAGGAAGTCGTTTTAACTGTTTATTATAGTTAGAGTTCCCTGCACTGCAAGTCTAAAAGAAGCTCTCTTCTGTTCAGGATTGTTATACTGAACATGATGAGTTTATATCGTTCTGTTGTTTGTTTATCTAATGCATTATCCTATTTACATCGAGAAACAAAAAAACAATTGAAACGAAAATGAAAGCATAACATCTTGGTGTTCTGGTTTCATCCGTTTTATGTTTCTAAGCTTGTTTTGGAAGTGACATCAACCATTTACTAGCTTCACCATTCACCTACACATCTTAGGCTTGAGTGATATTCTAAAGGCTATTTGTAAAAGAAACTGAGAGTCTAAAACATTATATCAATTTACTTTGGGGTAAATTATGTATGCCCGATTGATGAAAGAAGTTCTTGTGATGTAGAGTTGTTGCTATGTATTCTACTCCTACCCCTTCAAAACCAAAAGAACAGAGTGTTAAAAGTAGTGAAATCAGGCAACCGAGGCTAGTAAACAACAGCTCGACTTACAATCTTCTATTATTCAGGTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAATAACGTCAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTACGAATTGCGCTACTTCAACATTGCTGAGAATGAAGCAGATGAAGAAGATTAAACATGACCATTCAATGTCTCTCTTTATCTTCTTTCTTTAGTCGGCCTTCACTTTTTGATCCTTGTATCATCACTAATGAATCCTGTCTTCTCATTTCTAGATTTTGTTTTTGCAGTTTGCTTATCAGTAAAAGAAAACATTACATCGATACTTTGGTTTGTCTATCTTTGGGGATAATTATGAAAATGTCAATTTATCTGTATTGCCTTT</genome_strand>
        <mrna_strand>AGAAATACAGAGAGTGTAAAGATGAGCCGAGCAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATTGACTGTTCGAAGCCGGTAGAAGACAGTATCATGGAGATTGCTTCTCTTGACAAGTTCCTTCAAGAGAGGATTAAGGTTGGTGGAAAAGCTGGTGCTCTTGGGGATTCCGTTACTGTTACTCGTGACAAGAACAAGATCACCGTCACCTGCAACTCAACTTTTTCCAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAATAACGTCAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTACGAATTGCGCTACTTCAACATTGCTGAGAATGAAGCAGATGAAGAAGATTAAACATGACCATTCAATGTCTCTCTTTATCTTCTTTCTTTAGTCGGCCTTCACTTTTTGATCCTTGTATCATCACTAATGAATCCTGTCTTCTCATTTCTAGATTTTGTTTTTGCAGTTTGCTTATCAGTAAAAGAAAACATTACATCGATACTTTGGTTTGTCTATCTTTGGGGATAATTATGAAAATGTCAATTTATCTGTATTGCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E287536" ref_strand="+" ref_description="SGN-E287536 [cLES-9-F23]">
      <seq>actgttactcgtgacaagaacaagatcaccgtcacctgcaactcaactttttccaagaggtacctcaaataccttgtcaaaaagtacttgaagaaaaataacgtcagggattggcttagggtgattgcttccaacaaggacaggaatgtttacgaattgcgctacttcaacattgctgagaatgaagcagatgaagaagattaaacatgaccattcaatgtctctctttatcttctttctttagtcggccttcactttttgatccttgtatcatcactaatgaatcctgtcttctcatttctagattttgtttttgcagtttgcttatcagtaaaagaaaacattacatcgatactttggtttgtctatctttggggataattatgaaaatgtcaatttatctgtattgcctttcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="+" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="111605" stop="115112"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111905" g_stop="111963" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111964" i_stop="114456" i_length="2493">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114457" g_stop="114812" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="415" r_length="356" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114813" i_stop="115017" i_length="205">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115018" g_stop="115029" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="427" r_length="12" r_score="0.583"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="+" ref_id="SGN-E287536" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287536" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111905" e_stop="111963"/>
          <exon e_start="114457" e_stop="114812"/>
          <exon e_start="115018" e_stop="115029"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGTTACTCGTGACAAGAACAAGATCACCGTCACCTGCAACTCAACTTTTTCCAAGAGGTACTGATTCTATTGCCTCATTTTCAGTTGTGTTTATTTGAAAAAAAAATGATTCTAGAAACTAAACTCTACTCGTAGATCATAAATTACTAGCTACAGTCGACTTCTATTATAGTTTGATAACGATTACACTTACCGATTGACAGTAACTTATCGCAGACCTATTCGATTATCCAGTGAGTTCTGTGTAGTCATTCACACATTAAGCTTTGACTCAGTTGGTAATCAGATAAATATATAGTTAATTTGATAAGTTTTTGATATTTGAATGATTAAATCCGACAAACAGAACCATTTTAGACCTACTCCTGTAGTTAAATGAACTATTTATTTAGGACATTATTCTCTCTTTTTTGGTGTTTATTTTTGTACTAGAGGACGGGCTTCGCACGTGTATTTTATGTGAATTTTTATAGATATGTTATAATGATAAAAATTTCATGGAAATATATATGTAAATTAATGAATAATATAATGTAACAATTACAAAATAAGAATAAAGACTTACGCAATAAAATATTCATAAAAAAACTAAATTAAGAAGTCTGATGGTGATAAAAATAAAAGACAAAAAAAAGACAGATTTAAGAATGATCCAATGTAAACAATGTTCTTATAAGACTGATGTATGTATAGATGAAAAAAATAAGTACATAACTCTCTGAGTTCTTATCGACTCCTTTCATATCCTATCAAAATTCAAGAGGTTTCTTCATCTACTTTAACTATTGAATGAAAATGATAGCCTAGTAATCTTGGTAGGGGTTTCATGAGATTAAAAAAGTTGAATTTATATAGATAGAATAGAAGGAATATCAAAAGATATATTAAAGTTTTAGTTTAAATATTTGGAGGTTATGAATATGAAAAGATGAGAGTTATGAATATTAAGAGTATAAAGTTGAATAAGTAATTAACAAATAATAATAAATAAATGAAGAATATGAAAAAAGAAGTTAAAATTAGCAAACCATGTAGAAAGAACAACTAAAGGTCTTATCACGTAATTAAGCGTTAATAAATTTAGATTTGTGAAGATAGAGTCATTCTTTAATAATAATCGAGAGGACATTATCAACGTGTGTCTCCATTTTGCAGATTTGCACCCTTTATATTATTAAATTCGTTATTTATCATAAAGGATAATACTTTATCCACATAAATTATATTATTCATGAGAGGGGTTAAGGAAAAAGTTATGAGAAAGAGGAAAAATATAGCAATTTAGTAAAGACTTTTTTTTTAAAAAAAAATTATAATTATTATATACATATAGATTATAGATGATAAATATTAATTAATTGGATATTTAATTAGAAATCAATCTTTAGAAGTCTAAAAGTCATTAACCTTTTAATTAAATTTATACAATCAAATATTTAAATATTTTATAACAATTTAATTTATAGGAGGGGTAAAACTGTAATTCAACTTTCAACTTTTTTTGTTGATGCTTTTAGTAATACATGATGAATTAAGAGTGCCCAGACTTGAAGCACAGTTCCACTCTGGATTTATCACTGTTTATTTATCCAAAAACACTATCCTGTTTACATTGGGAAATCAGTAGAAACAGAATGACTAAAACAGCAGTGTGTTCTAAGTTCGCATGATCGTTGAAGCCTTTACTAAGCTTATGGTACAGATAGTCTATATGCTTTATGATTAAGCAACTATGTCTGGGTCCCAAATTAGAAGTCAGGGTTGGCTTTTATTGGAGTTTGATTGTTTTTACAACTGACAGTCTGATATTAACTTATTCATAGCTTCTTTTATTTTGGCTCGTCTCTGCTTTACAAAGATTTCTTATTTGGATAGTGCAACAGCAACAACACCATACCCCATGTAACCCACAAGTGAGGTCTGGGGAGGGTAGAGACTCTGCACTATCCGTTAAGTGTAAGCATACCTTCTTGGATAGTGCAGATATTCATAAATCGCGCTCTTGCTAATGATTTTAAAAGGAAGTCGTTTTAACTGTTTATTATAGTTAGAGTTCCCTGCACTGCAAGTCTAAAAGAAGCTCTCTTCTGTTCAGGATTGTTATACTGAACATGATGAGTTTATATCGTTCTGTTGTTTGTTTATCTAATGCATTATCCTATTTACATCGAGAAACAAAAAAACAATTGAAACGAAAATGAAAGCATAACATCTTGGTGTTCTGGTTTCATCCGTTTTATGTTTCTAAGCTTGTTTTGGAAGTGACATCAACCATTTACTAGCTTCACCATTCACCTACACATCTTAGGCTTGAGTGATATTCTAAAGGCTATTTGTAAAAGAAACTGAGAGTCTAAAACATTATATCAATTTACTTTGGGGTAAATTATGTATGCCCGATTGATGAAAGAAGTTCTTGTGATGTAGAGTTGTTGCTATGTATTCTACTCCTACCCCTTCAAAACCAAAAGAACAGAGTGTTAAAAGTAGTGAAATCAGGCAACCGAGGCTAGTAAACAACAGCTCGACTTACAATCTTCTATTATTCAGGTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAATAACGTCAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTACGAATTGCGCTACTTCAACATTGCTGAGAATGAAGCAGATGAAGAAGATTAAACATGACCATTCAATGTCTCTCTTTATCTTCTTTCTTTAGTCGGCCTTCACTTTTTGATCCTTGTATCATCACTAATGAATCCTGTCTTCTCATTTCTAGATTTTGTTTTTGCAGTTTGCTTATCAGTAAAAGAAAACATTACATCGATACTTTGGTTTGTCTATCTTTGGGGATAATTATGAAAATGTCAATTTATCTGTATTGCCTTTCTCCTCTGGATGATCTCAAGACATATATAAGATTAAAATAGATATAATATCTCATAATTAATTCTTTTTATGTTGCACATAAATGAAAACAAATAATTTGAAGTGGAGAGAGGTTTTACACTTGCTAGGAAGAATTATATGTTATTGTATGCCTGAAAATCTGTACTGTCGACTCACATTTTTCTGTTGTTTTGAAATGTGGGCAGGGAAAGTGAAAA</genome_strand>
        <mrna_strand>ACTGTTACTCGTGACAAGAACAAGATCACCGTCACCTGCAACTCAACTTTTTCCAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAATAACGTCAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTACGAATTGCGCTACTTCAACATTGCTGAGAATGAAGCAGATGAAGAAGATTAAACATGACCATTCAATGTCTCTCTTTATCTTCTTTCTTTAGTCGGCCTTCACTTTTTGATCCTTGTATCATCACTAATGAATCCTGTCTTCTCATTTCTAGATTTTGTTTTTGCAGTTTGCTTATCAGTAAAAGAAAACATTACATCGATACTTTGGTTTGTCTATCTTTGGGGATAATTATGAAAATGTCAATTTATCTGTATTGCCTTTC.............................................................................................................................................................................................................AAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E739888" ref_strand="+" ref_description="SGN-E739888 [LC19BA04]">
      <seq>gcctgctagaggtgatgtggaacctggggagattccttcgttggttgatttggggctcaatcctagtgccaccatgggtcagaatggaaaatcagctgctaatgcttcccttgtgggaggagagactgaagcactgcaaagacttagaaaatttgcagcagaatgtcaggtccaacccaataaggaaaacaaggatggcacaactgacagcatatatggtgcaaacttttcttgcaaaatatcgccttggttagctatgggatgtctctcaccccgttccatgtttgatgaattaaaaaagtccacgtcaagaacgatttctgctgcctctgccaagaaagatggtggtagtggcaatgggctgaactggctgatgtacgagctgttatggagggattttttcagattcatcaccaagaaatatagtgctgcaaaacaaaatagtgctgctccagtaactacttgcgtaggcgctgctgcttaattatggtatactcaaaaggaaaatgaaggtttcctttttgtatcttgatttatttttttcggaagtttagctgtggaatgttagagttggactgtcattgaattgaagcattttttcttttgacattaagtgttggacataaaagaatttgtcgccatttctagcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="119534" stop="19699"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119234" g_stop="119153" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119152" i_stop="117854" i_length="1299">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117853" g_stop="117624" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="312" r_length="230" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117623" i_stop="117532" i_length="92">
            <donor d_prob="0.881" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117531" g_stop="117439" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="405" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117438" i_stop="117297" i_length="142">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117296" g_stop="117050" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="651" r_length="246" r_score="0.964"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="117049" i_stop="114721" i_length="2329">
            <donor d_prob="0.502" d_score="0.96"/>
            <acceptor a_prob="0.036" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="114720" g_stop="114705" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="652" r_stop="667" r_length="16" r_score="0.625"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E739888" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119234" e_stop="119153"/>
          <exon e_start="117853" e_stop="117624"/>
          <exon e_start="117531" e_stop="117439"/>
          <exon e_start="117296" e_stop="117050"/>
          <exon e_start="114720" e_stop="114705"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTGCTAGAGGTGATGTGGAACCTGGGGAGATTCCTTCGTTGGTTGATTTGGGGCTCAATCCTAGTGCCACCATGGGTCAGGTATTACTTTGTTCGATCTCAAATATCGTAGAGGATTTAGGTTTATTCAGTATTGGATGAAAGTAGTTTTACCTTTGATGTCAAAGAACTTGTAATTTAACTGAAATGACATATTTGCGAGTGTTGGAATGAAACTGGTGTAAATGTAGTGTAACCGATAATAAGGATGATTCATATAGTTGAACCCAACAAGTTTGAGATTGAGCTACACTAGTAGTCCTTTAGTTTCACGTAGTTTTCCGTTTCTTAGACACTTCATTGGAAGTGGTAGAGATGATCAAGATTCCATTTTTATACGAATGGAAGTGATTCAAGTCAGAAATAACTGATGGTTTAATTCAACATATCTCTTGTATATGTATTCTGAACATTTGTTAGATAAAACCACATGTTTTAAGTAGGTTTAGTATTTGGCGTTTGAACATCAGTAATTTAAATGATCCTTGCTCTATCGTGTAGTGTCCTTCTATAGTTGTGTGCAGTGTTCAGGAAAGCAAGGCGAAGCAATGCGAGCCTTCTACGCTTCACAAACTAGAATGAGTATGTGAGTGCTTCATCGCCTAAAGCGTGAAGCAGGGCCTTATCACTTTTTTCCACTTCCTACTTCCCTGAACACTGGTTGTGTACACTGAGTATCCAGCTCATAGCTGTGACATTTTGTTGATCAATATGTTAATGTACTTCTTATCAGGCCGTCACCAACTAGGACACTACACACCAACTATAGTGCTCATAGAATAGACCAAAGAACTCTTATTTGTTAGCCTGAGAATATGTAATGTAGAAAGAACATCTTTTAGCCACGTTTGGAGGTTACTTTTTTAGTATTGCCTGTAGCACAGGCCACAGTGCACAATCACTTAAGAACTGTTGCTTGAATTTTGTAATTGCCTTACTGTATTGTAACTTTGGAACTGTAAGTTGTTTCACATCACAAACTAGTCAAACAAAGTTTATTTGTTTCAGTTACTTTGCAAACTATGGCAAACATGAACATTTCTTTATCTTTGCATAATCATTTGCATTTGCACATCATTTAGAATGACTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAGAGACTTCAATTTTGTAGTTGCCATACTGTATTTTTCACCGACTTGAATTTTGTAATTGCTGTACTGTATTTAAACTTTCGGAGTTGTCAGTTGTTTAACATCACAAACTAGTCAAAAAAAGTTGATTCATTTCAGTTATTTCGCTAACTATTGTAAACATGAACATTTCTTTATCTTGGTATACTTAATCATTTGCATTTGCCAACCATTTAGAATGGAAAATCAGCTGCTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAAAGACTTAGAAAATTTGCAGCAGAATGTCAGGCCCAACCCAGTAAGGAAAACAAGGATGGCACAAATGACAGCATATATGGTGCAAACTTTTCTTGCAAAATATCGCCTTGGTTAGCTATGGGATGTCTCTCACCCCGTTCCATGTTTGATGAATTGAAGAAGTCCACTTCAAGGTTAATGTCTTGTCAATAGTTTTCTTATCCTGATACTAATGCCTGTGAGACCAATATCACTGGCTAACGCTACATTGGTTGTTGTGCTGCAGAACGATTTCTGCTGCCTCTGCCAAGAAAGATGGTGGTAGTGGCACTGGGCTGAACTGGCTGATGTACGAGCTGTTATGGAGGGATTTTTTCAGGTAATTTAGCATGCAACTTAGCTCCTATGATTGAGATGCTTGTTTCAGTTTCGTATAGTGTGATACTCGTTCCATCCTTTATGAAACAATTCCCGTCCTTTAAAATTATTCCTTGGATAACATTCTGTTTTCTGAATGCCAGATTCATCACCAAGAAATATAGTGCTGCAAAACAAAATAGTGCTGCTCCAGTAACTACTTGCGTAGGAGCTGCTGCTTAACGATGGTATACTCAAAAGGAGAATGAAGGTTTCCTTTTTGTAGCTTGATTTATTTTTTCCGGAAGTTTAGCTGTGGAATGTTAGAGTTGGACTGCCATTGAATTGAAGCATTTTTTCTTTTGACAATAAGTGTTGAGACATAAAAGAATTTGTCGCCATTTCTAGCAAGTCGCTCTACAATCCTTCTTATGCTAGTATTTATATATTTTTGATTTCATCTGTAGTTGAAACAGGTGTGATAACAAACATACCTGTAGTTGAAATATGTGTTCCATGTTTGAGATTACCATCCATCTTGAACCCGCGGAGAGTATCCTTGAGCATCAGATGATTTACTATTGATACTCATTTCAATGTAAACTAGTTCTACTGGATATTTGCATTGATCTCTATAGAACTACGCCCAGGAACTTTATGTACCTTCTTCGTCTCCATAACGTTTCTGATGTCCCCAGCATCTTTCCACCTACCCATCTTAGCGTAGACATTGGAGAGAAGAACATAAGCTGCACTATTTGTGGGATCTTGCTCTATTATTTTGTTGAGTGCAATCTCACATGTTTCAATATCTCCACACATCCTAGCTCCACTAAGAAGAGCTCCCCAAATAAGCACACCTGGTTCCATAGGCATTGTATTCAGAAGATCCCACGCTTCATCGATCAAACCAGCTTTGCCATAAAGGTCAATCATACAACCATAGTGCTGAACTGAAGGCGAAATACCAAACTCTTTACTCATCCTCTCAAACATGTCCTTCCCTTGACTCACCAATCCTCCATGTACACAAGCAGAAAGAACACCTAAGAACGTGATATCATCAGGTGTTACTCCGCTATCAACCATATTTGAAAACAAACAGAGACAATCTTCCCAGTATCCATGTTTCGCAAGACCTGAGATCATGGCATTCCAAGCCATTACATCCTTCTTCGGACCCAAATTTTCAAAAACTAATCTTGCCCGGACTATACTCCCACATTTAGCATACATCTCAATCAACGAAGTGCCAAGTACAACATTTATCTCCATCCCAAGCTTGTAAACACAAGCATGAGCCCATTTCCCATGCTCAAGTGAACCCAACTGCTCACACGCCGCAAGCAAAATAGCCATGGTATACTCATTAGGCATAACTTCATTTTCCTTCATCATCTGATTAAACAACTCCAATGCTTCTTCACACTTACCCCACCTCACATAACCATCCAACATACTACTCCAAGACACAACATTTCTACTAGGCATTTTAACAAACAGTTCACGCGCAACACTAAGCAAACCTGCTTTCACATTCGCATTCACAATAGAATTCCACGCAGGCAAGTCTCGTTGAGACATTTCATCAAACACCTCCCGTGCAGAACCCACATCGCCGCAAGCAGTGTACATACTGATTAGCGAAGTTTGGACAAATGGGTCGGATGAAAAACCGAAAATAAGAACTTGTGAGTGAATGGATCGTCCCAATTGGAGGTGTAGTGGAGAATGGACGGACTGGAGGAGAAAAGGGAAGGTGTAGTAATCAATATGGACGCCATGGAAGCGCATTCGGAGGAAGATGGAGAGTGGGGTATGGGTGGGGCTTGAAGGTTGATGAGTTCGTTGAACATAGGCTCTGATCAGAGTATTCCAAGTGAAACAATCGACAGTTCGATGCCATAGATTGAGAGAAGGGTGCCTTAAAGATATGAGCTTTCTGGTTGATATCTTCATTTGGATTTTGAGACATCCCCAGGCGGGAAGGGTAGTTTAGCAGTGGTTTCAATGCTCAAAGCGCAAAGTTTAGCTTCGGGCGATGGATTTTGAAGTTAGAAGTTTGAAAATTCGACTACTTGAAGTTATATTAAAATCTGCATGGTCAAACGTTAGCTTAATATTGTGTATTGTGAGAATCTTAAATAGGTCGGCTATTTAAAGATCATGAGAATCTTAGTAGCTCAATTAATTAACTACTGAACTTTCACACGTTAGCTTAATGTTGTGTATCACGAGAATCTATTCAGTTACCTAAAGTATCACGAGAATCTTAATAGCTCAATTGATTAAATACTGAACTTTCACATGTCAGCTTAACATTGTTTATCGCAAAAAATTTAATAGATCAGCTATCTAAAGTATCATGAGAATCTAAGTAGCAGTGAACTTTCACCCTGTTAATAAAGGTTCGAGTCTCACTCTCAACTCGTTTTCACTTTCCCTGCCCACATTTCAAAACAACAGAAAAATGTGAGTCGACAGTACAGATTTTCAGGCATACAATAACATATAATTCTTCCTAGCAAGTGTAAAACCTCTCTCCACTTCAAATTATTTGTTTTCATTTATGTGCAACATAAAAAGAATTAATTATGAGATATTATATCTATTTTAATCTTATATATGTCTTGAGATCATCCAGAGGAGAAAGGCAATACAGATAAATTGACATTTTCATAATTATCCCCAAAGATAGACAAACCAAAGTATCGATGTAATGTTTTCTTTTACTGATAAGCAAACTGCAAAAACAA</genome_strand>
        <mrna_strand>GCCTGCTAGAGGTGATGTGGAACCTGGGGAGATTCCTTCGTTGGTTGATTTGGGGCTCAATCCTAGTGCCACCATGGGTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAAATCAGCTGCTAATGCTTCCCTTGTGGGAGGAGAGACTGAAGCACTGCAAAGACTTAGAAAATTTGCAGCAGAATGTCAGGTCCAACCCAATAAGGAAAACAAGGATGGCACAACTGACAGCATATATGGTGCAAACTTTTCTTGCAAAATATCGCCTTGGTTAGCTATGGGATGTCTCTCACCCCGTTCCATGTTTGATGAATTAAAAAAGTCCACGTCAAG............................................................................................AACGATTTCTGCTGCCTCTGCCAAGAAAGATGGTGGTAGTGGCAATGGGCTGAACTGGCTGATGTACGAGCTGTTATGGAGGGATTTTTTCAG..............................................................................................................................................ATTCATCACCAAGAAATATAGTGCTGCAAAACAAAATAGTGCTGCTCCAGTAACTACTTGCGTAGGCGCTGCTGCTTAATTATGGTATACTCAAAAGGAAAATGAAGGTTTCCTTTTTGTATCTTGATTTATTTTTTTCGGAAGTTTAGCTGTGGAATGTTAGAGTTGGACTGTCATTGAATTGAAGCATTTTTTCTTTTGACATTAAGTGTTG-GACATAAAAGAATTTGTCGCCATTTCTAGCAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E418067" ref_strand="+" ref_description="SGN-E418067 [STM-26-H10]">
      <seq>atctttggcatccaactgtcgattgtttcacttggaatactctcatcagagcctatgttcaacgaactcatcaaccttcaagccccatccataccccactctccatcttcctccgaatgcgcttccatggcgtccatattgattactacaccttcccttttctcctccagtcagtccattctccaccacacctccaattgggacgatccattcactcacaggttcttgtttttggtttttcatccgacccgtttgtccaaacttcgttgatcagtatgtacactgcttgtggcgatgtggggtctgcacgagatgtgtttgatgaaatgtctcaaccggatttgcctgcgtggaattctattgttaatgcgaacgtgaaagcgggtttgcttagtgttgcgcgtgaactgtttgttaaaatgccaagcagaaatgttgtatcttggagtagtatgttggatggttatgtgaggtggggtaagtgtgaagaagcattggagttgtttaatgagatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="+" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="115251" stop="116366"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115551" g_stop="116066" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="516" r_length="516" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="+" ref_id="SGN-E418067" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E418067" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115551" e_stop="116066"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTATGGCATCGAACTGTCGATTGTTTCACTTGGAATACTCTGATCAGAGCCTATGTTCAACGAACTCATCAACCTTCAAGCCCCACCCATACCCCACTCTCCATCTTCCTCCGAATGCGCTTCCATGGCGTCCATATTGATTACTACACCTTCCCTTTTCTCCTCCAGTCCGTCCATTCTCCACTACACCTCCAATTGGGACGATCCATTCACTCACAAGTTCTTATTTTCGGTTTTTCATCCGACCCATTTGTCCAAACTTCGCTAATCAGTATGTACACTGCTTGCGGCGATGTGGGTTCTGCACGGGAGGTGTTTGATGAAATGTCTCAACGAGACTTGCCTGCGTGGAATTCTATTGTGAATGCGAATGTGAAAGCAGGTTTGCTTAGTGTTGCGCGTGAACTGTTTGTTAAAATGCCTAGTAGAAATGTTGTGTCTTGGAGTAGTATGTTGGATGGTTATGTGAGGTGGGGTAAGTGTGAAGAAGCATTGGAGTTGTTTAATCAGATGA</genome_strand>
        <mrna_strand>ATCTTTGGCATCCAACTGTCGATTGTTTCACTTGGAATACTCTCATCAGAGCCTATGTTCAACGAACTCATCAACCTTCAAGCCCCATCCATACCCCACTCTCCATCTTCCTCCGAATGCGCTTCCATGGCGTCCATATTGATTACTACACCTTCCCTTTTCTCCTCCAGTCAGTCCATTCTCCACCACACCTCCAATTGGGACGATCCATTCACTCACAGGTTCTTGTTTTTGGTTTTTCATCCGACCCGTTTGTCCAAACTTCGTTGATCAGTATGTACACTGCTTGTGGCGATGTGGGGTCTGCACGAGATGTGTTTGATGAAATGTCTCAACCGGATTTGCCTGCGTGGAATTCTATTGTTAATGCGAACGTGAAAGCGGGTTTGCTTAGTGTTGCGCGTGAACTGTTTGTTAAAATGCCAAGCAGAAATGTTGTATCTTGGAGTAGTATGTTGGATGGTTATGTGAGGTGGGGTAAGTGTGAAGAAGCATTGGAGTTGTTTAATGAGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E447641" ref_strand="+" ref_description="SGN-E447641 [cSTA-28-G21]">
      <seq>atctttggcatccaactgtcgattgtatcacttggaatactctcatcagagcctatgttcaacgaactcatcaaccttcaagccccatccataccccactctccatctttctccgaatgcgcttacatggcgtccatattgattactacaccttcccttttctcctccagtcagtccattctccaccacacctccaattgggacgatccattcactcacaggttcttgtttttggtttttcatccgacccgtatgtccaaacttcgttgatcagtatgtacactgcttgtggcgatgtggggtctgcacgagatgtgtttgatgaaatgtctcaaccggatttgcctgcgtggaattctatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="+" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="115251" stop="116212"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115551" g_stop="115912" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="362" r_length="362" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="+" ref_id="SGN-E447641" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>362</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E447641" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115551" e_stop="115912"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTATGGCATCGAACTGTCGATTGTTTCACTTGGAATACTCTGATCAGAGCCTATGTTCAACGAACTCATCAACCTTCAAGCCCCACCCATACCCCACTCTCCATCTTCCTCCGAATGCGCTTCCATGGCGTCCATATTGATTACTACACCTTCCCTTTTCTCCTCCAGTCCGTCCATTCTCCACTACACCTCCAATTGGGACGATCCATTCACTCACAAGTTCTTATTTTCGGTTTTTCATCCGACCCATTTGTCCAAACTTCGCTAATCAGTATGTACACTGCTTGCGGCGATGTGGGTTCTGCACGGGAGGTGTTTGATGAAATGTCTCAACGAGACTTGCCTGCGTGGAATTCTATT</genome_strand>
        <mrna_strand>ATCTTTGGCATCCAACTGTCGATTGTATCACTTGGAATACTCTCATCAGAGCCTATGTTCAACGAACTCATCAACCTTCAAGCCCCATCCATACCCCACTCTCCATCTTTCTCCGAATGCGCTTACATGGCGTCCATATTGATTACTACACCTTCCCTTTTCTCCTCCAGTCAGTCCATTCTCCACCACACCTCCAATTGGGACGATCCATTCACTCACAGGTTCTTGTTTTTGGTTTTTCATCCGACCCGTATGTCCAAACTTCGTTGATCAGTATGTACACTGCTTGTGGCGATGTGGGGTCTGCACGAGATGTGTTTGATGAAATGTCTCAACCGGATTTGCCTGCGTGGAATTCTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E390468" ref_strand="+" ref_description="SGN-E390468 [TUS-40-C23]">
      <seq>tttgtagcttgatttattttttccggaagtttagctgtggaatgtgatagttggactgccattgaattgaagcattttttcttttgacaataagtgttgagacataagagaatttgtcgccatttctatcacgcccctctacaatccttcttatgctagtatttatatatttttgatttcatctggaattgaaacaggtgtgataccaaacatacctgtacttgaaatatgtgtgccatgtttgagattaccatccatcttgaacccgccgagagtatccttgagcatcacatgatttactagtgatactcgtttcaatggaaaaaaaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="117481" stop="116558"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117181" g_stop="116850" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="332" r_length="332" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E390468" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>332</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E390468" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117181" e_stop="116850"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTAGCTTGATTTATTTTTTCCGGAAGTTTAGCTGTGGAATGTTAGAGTTGGACTGCCATTGAATTGAAGCATTTTTTCTTTTGACAATAAGTGTTGAGACATAAAAGAATTTGTCGCCATTTCTAGCAAGTCGCTCTACAATCCTTCTTATGCTAGTATTTATATATTTTTGATTTCATCTGTAGTTGAAACAGGTGTGATAACAAACATACCTGTAGTTGAAATATGTGTTCCATGTTTGAGATTACCATCCATCTTGAACCCGCGGAGAGTATCCTTGAGCATCAGATGATTTACTATTGATACTCATTTCAATGTAAACTAGTTCT</genome_strand>
        <mrna_strand>TTTGTAGCTTGATTTATTTTTTCCGGAAGTTTAGCTGTGGAATGTGATAGTTGGACTGCCATTGAATTGAAGCATTTTTTCTTTTGACAATAAGTGTTGAGACATAAGAGAATTTGTCGCCATTTCTATCACGCCCCTCTACAATCCTTCTTATGCTAGTATTTATATATTTTTGATTTCATCTGGAATTGAAACAGGTGTGATACCAAACATACCTGTACTTGAAATATGTGTGCCATGTTTGAGATTACCATCCATCTTGAACCCGCCGAGAGTATCCTTGAGCATCACATGATTTACTAGTGATACTCGTTTCAATGGAAAAAAAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E390093" ref_strand="+" ref_description="SGN-E390093 [TUS-17-C23](-)">
      <seq>tttgtagcttgatttattttttccggaagtttagctgtggaatgttagagttggactgccattgaattgaagcattttttcttttgacaataagtgttgagacataaaagaatttgtcgccatttttagcaagtcgctatacaatccttcttatgctagtatttatatatttttgatttcatctgtagttgaaacaggtgtgataacaaacatacctgtagttgaaatatgtgttccatgtttgagattaccatccatcttgaacccgcggagagtatccttgagcatcagatgatttactattgatactcatttcaatgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="117481" stop="116558"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117181" g_stop="116851" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E390093" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E390093" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117181" e_stop="116851"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTAGCTTGATTTATTTTTTCCGGAAGTTTAGCTGTGGAATGTTAGAGTTGGACTGCCATTGAATTGAAGCATTTTTTCTTTTGACAATAAGTGTTGAGACATAAAAGAATTTGTCGCCATTTCTAGCAAGTCGCTCTACAATCCTTCTTATGCTAGTATTTATATATTTTTGATTTCATCTGTAGTTGAAACAGGTGTGATAACAAACATACCTGTAGTTGAAATATGTGTTCCATGTTTGAGATTACCATCCATCTTGAACCCGCGGAGAGTATCCTTGAGCATCAGATGATTTACTATTGATACTCATTTCAATGTAAACTAGTTC</genome_strand>
        <mrna_strand>TTTGTAGCTTGATTTATTTTTTCCGGAAGTTTAGCTGTGGAATGTTAGAGTTGGACTGCCATTGAATTGAAGCATTTTTTCTTTTGACAATAAGTGTTGAGACATAAAAGAATTTGTCGCCATTTTTAGCAAGTCGCTATACAATCCTTCTTATGCTAGTATTTATATATTTTTGATTTCATCTGTAGTTGAAACAGGTGTGATAACAAACATACCTGTAGTTGAAATATGTGTTCCATGTTTGAGATTACCATCCATCTTGAACCCGCGGAGAGTATCCTTGAGCATCAGATGATTTACTATTGATACTCATTTCAATGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E390094" ref_strand="+" ref_description="SGN-E390094 [TUS-17-C23]">
      <seq>tttgtagcttgatttattttttccggaagtttagctgtggaatgttagagttggactgccattgaattgaagcattttttcttttgacaataagtgttgagacataaaagaatttgtcgccatttctagcaagtcgctctacaatccttcttatgctagtatttatatatttttgatttcatctgtagttgaaacaggtgtgataacaaacatacctgtagttgaaatatgtgttccatgtttgagattaccatccatcttgaacccgcggagagtatccttgagcatcagatgatttactattgatactcatttcaatgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="117481" stop="116558"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117181" g_stop="116851" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E390094" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E390094" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117181" e_stop="116851"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTAGCTTGATTTATTTTTTCCGGAAGTTTAGCTGTGGAATGTTAGAGTTGGACTGCCATTGAATTGAAGCATTTTTTCTTTTGACAATAAGTGTTGAGACATAAAAGAATTTGTCGCCATTTCTAGCAAGTCGCTCTACAATCCTTCTTATGCTAGTATTTATATATTTTTGATTTCATCTGTAGTTGAAACAGGTGTGATAACAAACATACCTGTAGTTGAAATATGTGTTCCATGTTTGAGATTACCATCCATCTTGAACCCGCGGAGAGTATCCTTGAGCATCAGATGATTTACTATTGATACTCATTTCAATGTAAACTAGTTC</genome_strand>
        <mrna_strand>TTTGTAGCTTGATTTATTTTTTCCGGAAGTTTAGCTGTGGAATGTTAGAGTTGGACTGCCATTGAATTGAAGCATTTTTTCTTTTGACAATAAGTGTTGAGACATAAAAGAATTTGTCGCCATTTCTAGCAAGTCGCTCTACAATCCTTCTTATGCTAGTATTTATATATTTTTGATTTCATCTGTAGTTGAAACAGGTGTGATAACAAACATACCTGTAGTTGAAATATGTGTTCCATGTTTGAGATTACCATCCATCTTGAACCCGCGGAGAGTATCCTTGAGCATCAGATGATTTACTATTGATACTCATTTCAATGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E390607" ref_strand="+" ref_description="SGN-E390607 [TUS-47-C24]">
      <seq>tttgtagcttgatttattttttccggaagtttagctgtggaatgttagagttggactgccattgaattgaagcattttttcttttgacaataagtgttgagacataaaagaatttgtcgccatttctagcaagtcgctctacaatccttcttatgctagtatttatatatttttgatttcatctgtagttgaaacaggtgtgataacaaacatacctgtagttgaaatatgtgttccatgtttgagattaccatccatcttgaacccgcggagagtatccttgagcatcagatgatttactattgatactcatttcaatgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="117481" stop="116558"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117181" g_stop="116851" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E390607" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E390607" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117181" e_stop="116851"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTAGCTTGATTTATTTTTTCCGGAAGTTTAGCTGTGGAATGTTAGAGTTGGACTGCCATTGAATTGAAGCATTTTTTCTTTTGACAATAAGTGTTGAGACATAAAAGAATTTGTCGCCATTTCTAGCAAGTCGCTCTACAATCCTTCTTATGCTAGTATTTATATATTTTTGATTTCATCTGTAGTTGAAACAGGTGTGATAACAAACATACCTGTAGTTGAAATATGTGTTCCATGTTTGAGATTACCATCCATCTTGAACCCGCGGAGAGTATCCTTGAGCATCAGATGATTTACTATTGATACTCATTTCAATGTAAACTAGTTC</genome_strand>
        <mrna_strand>TTTGTAGCTTGATTTATTTTTTCCGGAAGTTTAGCTGTGGAATGTTAGAGTTGGACTGCCATTGAATTGAAGCATTTTTTCTTTTGACAATAAGTGTTGAGACATAAAAGAATTTGTCGCCATTTCTAGCAAGTCGCTCTACAATCCTTCTTATGCTAGTATTTATATATTTTTGATTTCATCTGTAGTTGAAACAGGTGTGATAACAAACATACCTGTAGTTGAAATATGTGTTCCATGTTTGAGATTACCATCCATCTTGAACCCGCGGAGAGTATCCTTGAGCATCAGATGATTTACTATTGATACTCATTTCAATGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E285047" ref_strand="+" ref_description="SGN-E285047 [cLER-19-P19]">
      <seq>ttgtagcttgatttattttttccggaagtttagctgtggaatgttagagttggactgccattgaattgaagcattttttcttttgacaataagtgttgagacataaaagaatttgtcgccatttctagcaagtcgctctacaatccttcttatgctagtatttatatatttttgatttcatctgtagttgaaacaggtgtgataacaaacatacctgtagttgaaatatgtgttccatgtttgagattaccatccatcttgaacccgcggagagtatccttgagcatcagatgatttactattgatactcatttcaatgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="117480" stop="116558"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117180" g_stop="116851" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="330" r_length="330" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E285047" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>330</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285047" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117180" e_stop="116851"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTAGCTTGATTTATTTTTTCCGGAAGTTTAGCTGTGGAATGTTAGAGTTGGACTGCCATTGAATTGAAGCATTTTTTCTTTTGACAATAAGTGTTGAGACATAAAAGAATTTGTCGCCATTTCTAGCAAGTCGCTCTACAATCCTTCTTATGCTAGTATTTATATATTTTTGATTTCATCTGTAGTTGAAACAGGTGTGATAACAAACATACCTGTAGTTGAAATATGTGTTCCATGTTTGAGATTACCATCCATCTTGAACCCGCGGAGAGTATCCTTGAGCATCAGATGATTTACTATTGATACTCATTTCAATGTAAACTAGTTC</genome_strand>
        <mrna_strand>TTGTAGCTTGATTTATTTTTTCCGGAAGTTTAGCTGTGGAATGTTAGAGTTGGACTGCCATTGAATTGAAGCATTTTTTCTTTTGACAATAAGTGTTGAGACATAAAAGAATTTGTCGCCATTTCTAGCAAGTCGCTCTACAATCCTTCTTATGCTAGTATTTATATATTTTTGATTTCATCTGTAGTTGAAACAGGTGTGATAACAAACATACCTGTAGTTGAAATATGTGTTCCATGTTTGAGATTACCATCCATCTTGAACCCGCGGAGAGTATCCTTGAGCATCAGATGATTTACTATTGATACTCATTTCAATGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E390848" ref_strand="+" ref_description="SGN-E390848 [TUS-47-C24](-)">
      <seq>tttgtagcttgatttattttttccggaagtttagctgtggaatgttagagttggactgccattgaattgaagcattttttcttttgacaataagtgttgagacataaaagaatttgtcgccatttctagcaagtcgctttacaatccttcttatgctagtatttatatatttttgatttcatctgtagttgaaacaggtgtgataacaaacatacctgtagttgaaatatgtgttccatgtttgagattaccatccatcttgaacccgcggagagtatccttgagcatcagatgatttactattgatactcatttcaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="117481" stop="83492"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117181" g_stop="116852" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="330" r_length="330" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E390848" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>330</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E390848" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117181" e_stop="116852"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTAGCTTGATTTATTTTTTCCGGAAGTTTAGCTGTGGAATGTTAGAGTTGGACTGCCATTGAATTGAAGCATTTTTTCTTTTGACAATAAGTGTTGAGACATAAAAGAATTTGTCGCCATTTCTAGCAAGTCGCTCTACAATCCTTCTTATGCTAGTATTTATATATTTTTGATTTCATCTGTAGTTGAAACAGGTGTGATAACAAACATACCTGTAGTTGAAATATGTGTTCCATGTTTGAGATTACCATCCATCTTGAACCCGCGGAGAGTATCCTTGAGCATCAGATGATTTACTATTGATACTCATTTCAATGTAAACTAGTT</genome_strand>
        <mrna_strand>TTTGTAGCTTGATTTATTTTTTCCGGAAGTTTAGCTGTGGAATGTTAGAGTTGGACTGCCATTGAATTGAAGCATTTTTTCTTTTGACAATAAGTGTTGAGACATAAAAGAATTTGTCGCCATTTCTAGCAAGTCGCTTTACAATCCTTCTTATGCTAGTATTTATATATTTTTGATTTCATCTGTAGTTGAAACAGGTGTGATAACAAACATACCTGTAGTTGAAATATGTGTTCCATGTTTGAGATTACCATCCATCTTGAACCCGCGGAGAGTATCCTTGAGCATCAGATGATTTACTATTGATACTCATTTCAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E226505" ref_strand="+" ref_description="SGN-E226505 [cLEL-26-F8](-)">
      <seq>acttcaagaacgatttctgctgcctctgccaaagaaaaatggtggtagtggcactgggctgaactggctgatgtacgagctgttatggagggattttttcagattcatcaccaagaaatatagtgctgcaaaacaaaatagtgctgctccagtaactacttgcgtaggagctgctgcttaacgatggtatactcaaaaggagaatgaaggtttcctttttgtagcttgatttattttttccggaagtttagctgtggaatgttagagttggactgccattgaattgaagcattttttcttttgacaataagtgttgagacataaaagaatttgtcgccatttctagcaagtcgctctacaatccttcttatgctagtatttatatatttttgatttcatctgtagttgaaacaggtgtgataacaaacatacctgtaattgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="117837" stop="116653"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117631" g_stop="117624" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="8" r_length="8" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117623" i_stop="117532" i_length="92">
            <donor d_prob="0.881" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117531" g_stop="117439" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="102" r_length="94" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117438" i_stop="117297" i_length="142">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117296" g_stop="116956" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="443" r_length="341" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="444" polyA_stop="458"/>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E226505" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E226505" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117631" e_stop="117624"/>
          <exon e_start="117531" e_stop="117439"/>
          <exon e_start="117296" e_stop="116956"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTCAAGGTTAATGTCTTGTCAATAGTTTTCTTATCCTGATACTAATGCCTGTGAGACCAATATCACTGGCTAACGCTACATTGGTTGTTGTGCTGCAGAACGATTTCTGCTGCCTCTGCC-AAGAAAGATGGTGGTAGTGGCACTGGGCTGAACTGGCTGATGTACGAGCTGTTATGGAGGGATTTTTTCAGGTAATTTAGCATGCAACTTAGCTCCTATGATTGAGATGCTTGTTTCAGTTTCGTATAGTGTGATACTCGTTCCATCCTTTATGAAACAATTCCCGTCCTTTAAAATTATTCCTTGGATAACATTCTGTTTTCTGAATGCCAGATTCATCACCAAGAAATATAGTGCTGCAAAACAAAATAGTGCTGCTCCAGTAACTACTTGCGTAGGAGCTGCTGCTTAACGATGGTATACTCAAAAGGAGAATGAAGGTTTCCTTTTTGTAGCTTGATTTATTTTTTCCGGAAGTTTAGCTGTGGAATGTTAGAGTTGGACTGCCATTGAATTGAAGCATTTTTTCTTTTGACAATAAGTGTTGAGACATAAAAGAATTTGTCGCCATTTCTAGCAAGTCGCTCTACAATCCTTCTTATGCTAGTATTTATATATTTTTGATTTCATCTGTAGTTGAAACAGGTGTGATAACAAACATACCTGTAGTTGAA</genome_strand>
        <mrna_strand>ACTTCAAG............................................................................................AACGATTTCTGCTGCCTCTGCCAAAGAAAAATGGTGGTAGTGGCACTGGGCTGAACTGGCTGATGTACGAGCTGTTATGGAGGGATTTTTTCAG..............................................................................................................................................ATTCATCACCAAGAAATATAGTGCTGCAAAACAAAATAGTGCTGCTCCAGTAACTACTTGCGTAGGAGCTGCTGCTTAACGATGGTATACTCAAAAGGAGAATGAAGGTTTCCTTTTTGTAGCTTGATTTATTTTTTCCGGAAGTTTAGCTGTGGAATGTTAGAGTTGGACTGCCATTGAATTGAAGCATTTTTTCTTTTGACAATAAGTGTTGAGACATAAAAGAATTTGTCGCCATTTCTAGCAAGTCGCTCTACAATCCTTCTTATGCTAGTATTTATATATTTTTGATTTCATCTGTAGTTGAAACAGGTGTGATAACAAACATACCTGTAATTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E226906" ref_strand="+" ref_description="SGN-E226906 [cLEL-26-F20](-)">
      <seq>tggtatactcaaaaggagaatgaaggtttcctttttgtagcttgatttattttttccgaaagtttagctgtggaatgttagagttggactgccattgaattaaagcattttttcttttgacaataagtgttgagacataaaagaatttgtcgccatttctagcaagtcgctctacaatccttcttatgctagtatttatatatttttgatttcatctgtagttgaaacaggtgtgataacaaacatacctgtagttgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="117514" stop="116653"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117214" g_stop="116956" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="259" r_length="259" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="260" polyA_stop="275"/>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E226906" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>259</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E226906" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117214" e_stop="116956"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTATACTCAAAAGGAGAATGAAGGTTTCCTTTTTGTAGCTTGATTTATTTTTTCCGGAAGTTTAGCTGTGGAATGTTAGAGTTGGACTGCCATTGAATTGAAGCATTTTTTCTTTTGACAATAAGTGTTGAGACATAAAAGAATTTGTCGCCATTTCTAGCAAGTCGCTCTACAATCCTTCTTATGCTAGTATTTATATATTTTTGATTTCATCTGTAGTTGAAACAGGTGTGATAACAAACATACCTGTAGTTGAA</genome_strand>
        <mrna_strand>TGGTATACTCAAAAGGAGAATGAAGGTTTCCTTTTTGTAGCTTGATTTATTTTTTCCGAAAGTTTAGCTGTGGAATGTTAGAGTTGGACTGCCATTGAATTAAAGCATTTTTTCTTTTGACAATAAGTGTTGAGACATAAAAGAATTTGTCGCCATTTCTAGCAAGTCGCTCTACAATCCTTCTTATGCTAGTATTTATATATTTTTGATTTCATCTGTAGTTGAAACAGGTGTGATAACAAACATACCTGTAGTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E279534" ref_strand="+" ref_description="SGN-E279534 [cLER-5-O14]">
      <seq>gaaaatcagctgctaatgcttcccttgtgggaggagagaatgaagcactgcaaagacttagaaaatttgcagcagaatgtcaggcccaacccagtaaggaaaacaaggatggcacaaatgacagcatatatggtgcaaacttttcttgcaaaatatcgccttggttagctatgggatgtctctcaccccgttccatgtttgatgaattgaagaagtccacttcaagaacgatttctgctgcctctgccaagaaagatggtggtagtggcactgggctgaactggctgatgtacgagctgttatggagggattttttcagattcatcaccaagaaatatagtgctgcaaaacaaaatagtgctgctccagtaactacttgcgtaggagctgctgcttaacgatggtatactcaaaaggagaatgaaggtttcctttttgtagcttgatttattttttccggaagtttagctgtggaatgttagagttggactgccattgaattgaagcattttttcttttgacaataagtgttgagacataaaagaatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="118149" stop="116766"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117849" g_stop="117624" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="226" r_length="226" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117623" i_stop="117532" i_length="92">
            <donor d_prob="0.881" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117531" g_stop="117439" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="319" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117438" i_stop="117297" i_length="142">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117296" g_stop="117066" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="550" r_length="231" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E279534" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279534" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117849" e_stop="117624"/>
          <exon e_start="117531" e_stop="117439"/>
          <exon e_start="117296" e_stop="117066"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATCAGCTGCTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAAAGACTTAGAAAATTTGCAGCAGAATGTCAGGCCCAACCCAGTAAGGAAAACAAGGATGGCACAAATGACAGCATATATGGTGCAAACTTTTCTTGCAAAATATCGCCTTGGTTAGCTATGGGATGTCTCTCACCCCGTTCCATGTTTGATGAATTGAAGAAGTCCACTTCAAGGTTAATGTCTTGTCAATAGTTTTCTTATCCTGATACTAATGCCTGTGAGACCAATATCACTGGCTAACGCTACATTGGTTGTTGTGCTGCAGAACGATTTCTGCTGCCTCTGCCAAGAAAGATGGTGGTAGTGGCACTGGGCTGAACTGGCTGATGTACGAGCTGTTATGGAGGGATTTTTTCAGGTAATTTAGCATGCAACTTAGCTCCTATGATTGAGATGCTTGTTTCAGTTTCGTATAGTGTGATACTCGTTCCATCCTTTATGAAACAATTCCCGTCCTTTAAAATTATTCCTTGGATAACATTCTGTTTTCTGAATGCCAGATTCATCACCAAGAAATATAGTGCTGCAAAACAAAATAGTGCTGCTCCAGTAACTACTTGCGTAGGAGCTGCTGCTTAACGATGGTATACTCAAAAGGAGAATGAAGGTTTCCTTTTTGTAGCTTGATTTATTTTTTCCGGAAGTTTAGCTGTGGAATGTTAGAGTTGGACTGCCATTGAATTGAAGCATTTTTTCTTTTGACAATAAGTGTTGAGACATAAAAGAATTTG</genome_strand>
        <mrna_strand>GAAAATCAGCTGCTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAAAGACTTAGAAAATTTGCAGCAGAATGTCAGGCCCAACCCAGTAAGGAAAACAAGGATGGCACAAATGACAGCATATATGGTGCAAACTTTTCTTGCAAAATATCGCCTTGGTTAGCTATGGGATGTCTCTCACCCCGTTCCATGTTTGATGAATTGAAGAAGTCCACTTCAAG............................................................................................AACGATTTCTGCTGCCTCTGCCAAGAAAGATGGTGGTAGTGGCACTGGGCTGAACTGGCTGATGTACGAGCTGTTATGGAGGGATTTTTTCAG..............................................................................................................................................ATTCATCACCAAGAAATATAGTGCTGCAAAACAAAATAGTGCTGCTCCAGTAACTACTTGCGTAGGAGCTGCTGCTTAACGATGGTATACTCAAAAGGAGAATGAAGGTTTCCTTTTTGTAGCTTGATTTATTTTTTCCGGAAGTTTAGCTGTGGAATGTTAGAGTTGGACTGCCATTGAATTGAAGCATTTTTTCTTTTGACAATAAGTGTTGAGACATAAAAGAATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E284494" ref_strand="-" ref_description="SGN-E284494 [cLER-16-P2]">
      <seq>ggtgatgtggaacctggggagattccttcgttggttgatttggggctcaatcctagtgccaccatgggtcagaatggaaaatcagctgctaatgcttcccttgtgggaggagagaatgaagcactgcaaagacttagaaaatttgcagcagaatgtcaggcccaacccagtaaggaaaacaaggatggcacaaatgacagcatatatggtgcaaacttttcttgcaaaatatcgccttggttagctatgggatgtctctcaccccgttccatgtttgatgaattgaagaagtccacttcaagaacgatttctgctgcctctgccaagaaagatggtggtagtggcactgggctgaactggctgatgtacgagctgttatggagggattttttcagattcatcaccaagaaatatagtgctgcaaaacaaaatagtgctgctccagtaactacttgcgtaggagctgctgcttaacgatggtatactcgaaaggagaatgaaggtttcctttttgtagcttgatttattttttccggaagtttagctgtggaatgttagagttggactgccattgaattgaagcattttttcttttgacaataagtgttgagacataaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="119524" stop="116770"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119224" g_stop="119153" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119152" i_stop="117854" i_length="1299">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117853" g_stop="117624" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="302" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117623" i_stop="117532" i_length="92">
            <donor d_prob="0.881" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117531" g_stop="117439" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="395" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117438" i_stop="117297" i_length="142">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117296" g_stop="117069" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="623" r_length="228" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E284494" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284494" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="119224" e_stop="119153"/>
          <exon e_start="117853" e_stop="117624"/>
          <exon e_start="117531" e_stop="117439"/>
          <exon e_start="117296" e_stop="117069"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGATGTGGAACCTGGGGAGATTCCTTCGTTGGTTGATTTGGGGCTCAATCCTAGTGCCACCATGGGTCAGGTATTACTTTGTTCGATCTCAAATATCGTAGAGGATTTAGGTTTATTCAGTATTGGATGAAAGTAGTTTTACCTTTGATGTCAAAGAACTTGTAATTTAACTGAAATGACATATTTGCGAGTGTTGGAATGAAACTGGTGTAAATGTAGTGTAACCGATAATAAGGATGATTCATATAGTTGAACCCAACAAGTTTGAGATTGAGCTACACTAGTAGTCCTTTAGTTTCACGTAGTTTTCCGTTTCTTAGACACTTCATTGGAAGTGGTAGAGATGATCAAGATTCCATTTTTATACGAATGGAAGTGATTCAAGTCAGAAATAACTGATGGTTTAATTCAACATATCTCTTGTATATGTATTCTGAACATTTGTTAGATAAAACCACATGTTTTAAGTAGGTTTAGTATTTGGCGTTTGAACATCAGTAATTTAAATGATCCTTGCTCTATCGTGTAGTGTCCTTCTATAGTTGTGTGCAGTGTTCAGGAAAGCAAGGCGAAGCAATGCGAGCCTTCTACGCTTCACAAACTAGAATGAGTATGTGAGTGCTTCATCGCCTAAAGCGTGAAGCAGGGCCTTATCACTTTTTTCCACTTCCTACTTCCCTGAACACTGGTTGTGTACACTGAGTATCCAGCTCATAGCTGTGACATTTTGTTGATCAATATGTTAATGTACTTCTTATCAGGCCGTCACCAACTAGGACACTACACACCAACTATAGTGCTCATAGAATAGACCAAAGAACTCTTATTTGTTAGCCTGAGAATATGTAATGTAGAAAGAACATCTTTTAGCCACGTTTGGAGGTTACTTTTTTAGTATTGCCTGTAGCACAGGCCACAGTGCACAATCACTTAAGAACTGTTGCTTGAATTTTGTAATTGCCTTACTGTATTGTAACTTTGGAACTGTAAGTTGTTTCACATCACAAACTAGTCAAACAAAGTTTATTTGTTTCAGTTACTTTGCAAACTATGGCAAACATGAACATTTCTTTATCTTTGCATAATCATTTGCATTTGCACATCATTTAGAATGACTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAGAGACTTCAATTTTGTAGTTGCCATACTGTATTTTTCACCGACTTGAATTTTGTAATTGCTGTACTGTATTTAAACTTTCGGAGTTGTCAGTTGTTTAACATCACAAACTAGTCAAAAAAAGTTGATTCATTTCAGTTATTTCGCTAACTATTGTAAACATGAACATTTCTTTATCTTGGTATACTTAATCATTTGCATTTGCCAACCATTTAGAATGGAAAATCAGCTGCTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAAAGACTTAGAAAATTTGCAGCAGAATGTCAGGCCCAACCCAGTAAGGAAAACAAGGATGGCACAAATGACAGCATATATGGTGCAAACTTTTCTTGCAAAATATCGCCTTGGTTAGCTATGGGATGTCTCTCACCCCGTTCCATGTTTGATGAATTGAAGAAGTCCACTTCAAGGTTAATGTCTTGTCAATAGTTTTCTTATCCTGATACTAATGCCTGTGAGACCAATATCACTGGCTAACGCTACATTGGTTGTTGTGCTGCAGAACGATTTCTGCTGCCTCTGCCAAGAAAGATGGTGGTAGTGGCACTGGGCTGAACTGGCTGATGTACGAGCTGTTATGGAGGGATTTTTTCAGGTAATTTAGCATGCAACTTAGCTCCTATGATTGAGATGCTTGTTTCAGTTTCGTATAGTGTGATACTCGTTCCATCCTTTATGAAACAATTCCCGTCCTTTAAAATTATTCCTTGGATAACATTCTGTTTTCTGAATGCCAGATTCATCACCAAGAAATATAGTGCTGCAAAACAAAATAGTGCTGCTCCAGTAACTACTTGCGTAGGAGCTGCTGCTTAACGATGGTATACTCAAAAGGAGAATGAAGGTTTCCTTTTTGTAGCTTGATTTATTTTTTCCGGAAGTTTAGCTGTGGAATGTTAGAGTTGGACTGCCATTGAATTGAAGCATTTTTTCTTTTGACAATAAGTGTTGAGACATAAAAGAAT</genome_strand>
        <mrna_strand>GGTGATGTGGAACCTGGGGAGATTCCTTCGTTGGTTGATTTGGGGCTCAATCCTAGTGCCACCATGGGTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAAATCAGCTGCTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAAAGACTTAGAAAATTTGCAGCAGAATGTCAGGCCCAACCCAGTAAGGAAAACAAGGATGGCACAAATGACAGCATATATGGTGCAAACTTTTCTTGCAAAATATCGCCTTGGTTAGCTATGGGATGTCTCTCACCCCGTTCCATGTTTGATGAATTGAAGAAGTCCACTTCAAG............................................................................................AACGATTTCTGCTGCCTCTGCCAAGAAAGATGGTGGTAGTGGCACTGGGCTGAACTGGCTGATGTACGAGCTGTTATGGAGGGATTTTTTCAG..............................................................................................................................................ATTCATCACCAAGAAATATAGTGCTGCAAAACAAAATAGTGCTGCTCCAGTAACTACTTGCGTAGGAGCTGCTGCTTAACGATGGTATACTCGAAAGGAGAATGAAGGTTTCCTTTTTGTAGCTTGATTTATTTTTTCCGGAAGTTTAGCTGTGGAATGTTAGAGTTGGACTGCCATTGAATTGAAGCATTTTTTCTTTTGACAATAAGTGTTGAGACATAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E746102" ref_strand="+" ref_description="SGN-E746102 [GI|47105300]">
      <seq>gaggcaaaaaaataaacatagtattattatattgacaccaactttaacaaaaccaacaaaattctttggagggtattaagccgtcgcttatcttcatcttcttcctctgattctgtacatttttctcaccggaaaactcatcagaaatggatccaaagaatcaattttccgataactcagaagcccaaacacctcaagaagaacaacagcagacacccattttaccgatagcttcaatttcacttgctttatccacaatccttccaacccatttccttaatcctcctaaaatctcaacccttttcaacaaaccaaacaaagtcaaaatcccaactcaagtttcatctcttacaaatctctcactttcatcttcttctcttccacctacaaattccaaattcaagtccactatttctgctaaccctcttcagaatactctaactcttaaccctcttcgtccttctgagccttctaatgctgctgggcttcgacgagcgtcgattgtttggttccgtaacgatcttcgtgttcatgataatgagtgtcttaacgcggctcataatgagtccatgtctgtattggctgtttactgttttgacccgagagattatggaaaatcctcatctgggtttgataaaactgggccgtatagggctagttttttgattgattctgttgctgaccttaggaagaatctacaggcaagagggtctgatcttgttgttagaattgggaagccggagactgtgttggtggaattagctaaagctgttggagctgaagctgtgtatgctcatagggaggtttcacatgatgaggttaaaggggaagataagattgatgctgtaatgaaggatgagggtttggaggtgaagtatttctggggtagtacattgtatcatgttgatgatttgccttttaagttggagcaaatgcctacgaattacggaggctttagggagaaagtgcagggattggaggtaaggaagacaattgaggcattggatcaattgaggggattgcctgctagaggtgatgtggaacctggggagattccttcgttggttgatttggggctcaatcctagtgccaccatgggtcagaatggaaaatcagctgctaatgcttcccttgtgggaggagagaatgaagcactgcaaagacttagaaaatttgcagcagaatgtcaggcccaacccagtaaggaaaacaaggatggcacaaatgacagcatatatggtgcaaacttttcttgcaaaatatcgccttggttagctatgggatgtctctcaccccgttccatgtttgatgaattgaagaagtccacttcaagaacgatttctgctgcctctgccaagaaagatggtggtagtggcactgggctgaactggctgatgtacgagctgttatggagggattttttcagattcatcaccaagaaatatagtgctgcaaaacaaaatagtgctgctccagtaactacttgcgtaggagctgctgcttaacgatggtatactcaaaaggagaatgaaggtttcctttttgtagcttgatttattttttccggaagtttagctgtggaatgttagagttggactgccattgaattgaagcattttttcttttgaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="120554" stop="116789"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120255" g_stop="119153" g_length="1103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1103" r_length="1103" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119152" i_stop="117854" i_length="1299">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117853" g_stop="117624" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1104" r_stop="1333" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117623" i_stop="117532" i_length="92">
            <donor d_prob="0.881" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117531" g_stop="117439" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1334" r_stop="1426" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117438" i_stop="117297" i_length="142">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117296" g_stop="117074" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1427" r_stop="1649" r_length="223" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E746102" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>1649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746102" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120255" e_stop="119153"/>
          <exon e_start="117853" e_stop="117624"/>
          <exon e_start="117531" e_stop="117439"/>
          <exon e_start="117296" e_stop="117074"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGGCAAAAAAATAAACATAGTATTATTATATTGACACCAACTTTAACAAAACCAACAAAATTCTTTGGAGGGTATTAAGCCGTCGCTTATCTTCATCTTCTTCCTCTGATTCTGTACATTTTTCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGCAGACACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTATTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGAAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGATTCTGTTGCTGACCTTAGGAAGAATCTACAGGCAAGAGGGTCTGATCTTGTTGTTAGAATTGGGAAGCCGGAGACTGTGTTGGTGGAATTAGCTAAAGCTGTTGGAGCTGAAGCTGTGTATGCTCATAGGGAGGTTTCACATGATGAGGTTAAAGGGGAAGATAAGATTGATGCTGTAATGAAGGATGAGGGTTTGGAGGTGAAGTATTTCTGGGGTAGTACATTGTATCATGTTGATGATTTGCCTTTTAAGTTGGAGCAAATGCCTACGAATTACGGAGGCTTTAGGGAGAAAGTGCAGGGATTGGAGGTAAGGAAGACAATTGAGGCATTGGATCAATTGAGGGGATTGCCTGCTAGAGGTGATGTGGAACCTGGGGAGATTCCTTCGTTGGTTGATTTGGGGCTCAATCCTAGTGCCACCATGGGTCAGGTATTACTTTGTTCGATCTCAAATATCGTAGAGGATTTAGGTTTATTCAGTATTGGATGAAAGTAGTTTTACCTTTGATGTCAAAGAACTTGTAATTTAACTGAAATGACATATTTGCGAGTGTTGGAATGAAACTGGTGTAAATGTAGTGTAACCGATAATAAGGATGATTCATATAGTTGAACCCAACAAGTTTGAGATTGAGCTACACTAGTAGTCCTTTAGTTTCACGTAGTTTTCCGTTTCTTAGACACTTCATTGGAAGTGGTAGAGATGATCAAGATTCCATTTTTATACGAATGGAAGTGATTCAAGTCAGAAATAACTGATGGTTTAATTCAACATATCTCTTGTATATGTATTCTGAACATTTGTTAGATAAAACCACATGTTTTAAGTAGGTTTAGTATTTGGCGTTTGAACATCAGTAATTTAAATGATCCTTGCTCTATCGTGTAGTGTCCTTCTATAGTTGTGTGCAGTGTTCAGGAAAGCAAGGCGAAGCAATGCGAGCCTTCTACGCTTCACAAACTAGAATGAGTATGTGAGTGCTTCATCGCCTAAAGCGTGAAGCAGGGCCTTATCACTTTTTTCCACTTCCTACTTCCCTGAACACTGGTTGTGTACACTGAGTATCCAGCTCATAGCTGTGACATTTTGTTGATCAATATGTTAATGTACTTCTTATCAGGCCGTCACCAACTAGGACACTACACACCAACTATAGTGCTCATAGAATAGACCAAAGAACTCTTATTTGTTAGCCTGAGAATATGTAATGTAGAAAGAACATCTTTTAGCCACGTTTGGAGGTTACTTTTTTAGTATTGCCTGTAGCACAGGCCACAGTGCACAATCACTTAAGAACTGTTGCTTGAATTTTGTAATTGCCTTACTGTATTGTAACTTTGGAACTGTAAGTTGTTTCACATCACAAACTAGTCAAACAAAGTTTATTTGTTTCAGTTACTTTGCAAACTATGGCAAACATGAACATTTCTTTATCTTTGCATAATCATTTGCATTTGCACATCATTTAGAATGACTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAGAGACTTCAATTTTGTAGTTGCCATACTGTATTTTTCACCGACTTGAATTTTGTAATTGCTGTACTGTATTTAAACTTTCGGAGTTGTCAGTTGTTTAACATCACAAACTAGTCAAAAAAAGTTGATTCATTTCAGTTATTTCGCTAACTATTGTAAACATGAACATTTCTTTATCTTGGTATACTTAATCATTTGCATTTGCCAACCATTTAGAATGGAAAATCAGCTGCTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAAAGACTTAGAAAATTTGCAGCAGAATGTCAGGCCCAACCCAGTAAGGAAAACAAGGATGGCACAAATGACAGCATATATGGTGCAAACTTTTCTTGCAAAATATCGCCTTGGTTAGCTATGGGATGTCTCTCACCCCGTTCCATGTTTGATGAATTGAAGAAGTCCACTTCAAGGTTAATGTCTTGTCAATAGTTTTCTTATCCTGATACTAATGCCTGTGAGACCAATATCACTGGCTAACGCTACATTGGTTGTTGTGCTGCAGAACGATTTCTGCTGCCTCTGCCAAGAAAGATGGTGGTAGTGGCACTGGGCTGAACTGGCTGATGTACGAGCTGTTATGGAGGGATTTTTTCAGGTAATTTAGCATGCAACTTAGCTCCTATGATTGAGATGCTTGTTTCAGTTTCGTATAGTGTGATACTCGTTCCATCCTTTATGAAACAATTCCCGTCCTTTAAAATTATTCCTTGGATAACATTCTGTTTTCTGAATGCCAGATTCATCACCAAGAAATATAGTGCTGCAAAACAAAATAGTGCTGCTCCAGTAACTACTTGCGTAGGAGCTGCTGCTTAACGATGGTATACTCAAAAGGAGAATGAAGGTTTCCTTTTTGTAGCTTGATTTATTTTTTCCGGAAGTTTAGCTGTGGAATGTTAGAGTTGGACTGCCATTGAATTGAAGCATTTTTTCTTTTGACAATAAGTGTTGAGACATAAA</genome_strand>
        <mrna_strand>GAGGCAAAAAAATAAACATAGTATTATTATATTGACACCAACTTTAACAAAACCAACAAAATTCTTTGGAGGGTATTAAGCCGTCGCTTATCTTCATCTTCTTCCTCTGATTCTGTACATTTTTCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGCAGACACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCATCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTATTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGAAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGATTCTGTTGCTGACCTTAGGAAGAATCTACAGGCAAGAGGGTCTGATCTTGTTGTTAGAATTGGGAAGCCGGAGACTGTGTTGGTGGAATTAGCTAAAGCTGTTGGAGCTGAAGCTGTGTATGCTCATAGGGAGGTTTCACATGATGAGGTTAAAGGGGAAGATAAGATTGATGCTGTAATGAAGGATGAGGGTTTGGAGGTGAAGTATTTCTGGGGTAGTACATTGTATCATGTTGATGATTTGCCTTTTAAGTTGGAGCAAATGCCTACGAATTACGGAGGCTTTAGGGAGAAAGTGCAGGGATTGGAGGTAAGGAAGACAATTGAGGCATTGGATCAATTGAGGGGATTGCCTGCTAGAGGTGATGTGGAACCTGGGGAGATTCCTTCGTTGGTTGATTTGGGGCTCAATCCTAGTGCCACCATGGGTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAAATCAGCTGCTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAAAGACTTAGAAAATTTGCAGCAGAATGTCAGGCCCAACCCAGTAAGGAAAACAAGGATGGCACAAATGACAGCATATATGGTGCAAACTTTTCTTGCAAAATATCGCCTTGGTTAGCTATGGGATGTCTCTCACCCCGTTCCATGTTTGATGAATTGAAGAAGTCCACTTCAAG............................................................................................AACGATTTCTGCTGCCTCTGCCAAGAAAGATGGTGGTAGTGGCACTGGGCTGAACTGGCTGATGTACGAGCTGTTATGGAGGGATTTTTTCAG..............................................................................................................................................ATTCATCACCAAGAAATATAGTGCTGCAAAACAAAATAGTGCTGCTCCAGTAACTACTTGCGTAGGAGCTGCTGCTTAACGATGGTATACTCAAAAGGAGAATGAAGGTTTCCTTTTTGTAGCTTGATTTATTTTTTCCGGAAGTTTAGCTGTGGAATGTTAGAGTTGGACTGCCATTGAATTGAAGCATTTTTTCTTTTGAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E573355" ref_strand="-" ref_description="SGN-E573355 [32652]">
      <seq>gatgattgcctttaaagtgaacaaatgcccacgattacggaggtttaggagaaagtgccagggatttggaagtaaggaagacaatgaggcattggatcaattgaagggattgcctgcctagaggtgatgtggaacctggggagattccttctttgttgatttggggctcaatcctagtgccacaatgggtcagaatggaaaaccagctgctaatgcttcccttgtgggaggagagaatgaagcacttcagagacttagaaaatttgcagcagaatgtcaggcccaacccagtaaggaaaacaaggatggcacaactgacagcatatatggtgcaaacttttcttgcaaaatatcgccttggttagctatgggatgtctctcaccccgttccatgtttgatgaattgaaaaagtccacttcaagaacgatttctgctgcctctggcaagaaagatggtggaagtggcactgggctgaactggctgatgtacgagctgttatggagggattttttcaggttcatcaccaagaaatatagtgctgcaaaacaaaatagtgctgctccagtaactgcttgtgtaggagctgctgcttaacgatggtatattcaaaaggagaatgaaggtttcctttttgtatcttgatttattttttccagaagtttagccgtggaatgttagagttgggctgtcattagattgaagcattcatcaatgatacattttgtcttttgacagtaagtgttggatataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="119650" stop="116791"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119350" g_stop="119153" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="0.894"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119152" i_stop="117854" i_length="1299">
            <donor d_prob="0.941" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117853" g_stop="117624" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="423" r_length="230" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117623" i_stop="117532" i_length="92">
            <donor d_prob="0.881" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117531" g_stop="117439" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="516" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117438" i_stop="117297" i_length="142">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117296" g_stop="117109" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="704" r_length="188" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E573355" ref_strand="-">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E573355" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="119350" e_stop="119153"/>
          <exon e_start="117853" e_stop="117624"/>
          <exon e_start="117531" e_stop="117439"/>
          <exon e_start="117296" e_stop="117109"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGATTTGCCTTTTAAGTTGGAGCAAATGCCTACGAATTACGGAGGCTTTAGGGAGAAAGTG-CAGGGA-TTGGAGGTAAGGAAGACAATTGAGGCATTGGATCAATTGAGGGGATTGCCTG-CTAGAGGTGATGTGGAACCTGGGGAGATTCCTTCGTTGGTTGATTTGGGGCTCAATCCTAGTGCCACCATGGGTCAGGTATTACTTTGTTCGATCTCAAATATCGTAGAGGATTTAGGTTTATTCAGTATTGGATGAAAGTAGTTTTACCTTTGATGTCAAAGAACTTGTAATTTAACTGAAATGACATATTTGCGAGTGTTGGAATGAAACTGGTGTAAATGTAGTGTAACCGATAATAAGGATGATTCATATAGTTGAACCCAACAAGTTTGAGATTGAGCTACACTAGTAGTCCTTTAGTTTCACGTAGTTTTCCGTTTCTTAGACACTTCATTGGAAGTGGTAGAGATGATCAAGATTCCATTTTTATACGAATGGAAGTGATTCAAGTCAGAAATAACTGATGGTTTAATTCAACATATCTCTTGTATATGTATTCTGAACATTTGTTAGATAAAACCACATGTTTTAAGTAGGTTTAGTATTTGGCGTTTGAACATCAGTAATTTAAATGATCCTTGCTCTATCGTGTAGTGTCCTTCTATAGTTGTGTGCAGTGTTCAGGAAAGCAAGGCGAAGCAATGCGAGCCTTCTACGCTTCACAAACTAGAATGAGTATGTGAGTGCTTCATCGCCTAAAGCGTGAAGCAGGGCCTTATCACTTTTTTCCACTTCCTACTTCCCTGAACACTGGTTGTGTACACTGAGTATCCAGCTCATAGCTGTGACATTTTGTTGATCAATATGTTAATGTACTTCTTATCAGGCCGTCACCAACTAGGACACTACACACCAACTATAGTGCTCATAGAATAGACCAAAGAACTCTTATTTGTTAGCCTGAGAATATGTAATGTAGAAAGAACATCTTTTAGCCACGTTTGGAGGTTACTTTTTTAGTATTGCCTGTAGCACAGGCCACAGTGCACAATCACTTAAGAACTGTTGCTTGAATTTTGTAATTGCCTTACTGTATTGTAACTTTGGAACTGTAAGTTGTTTCACATCACAAACTAGTCAAACAAAGTTTATTTGTTTCAGTTACTTTGCAAACTATGGCAAACATGAACATTTCTTTATCTTTGCATAATCATTTGCATTTGCACATCATTTAGAATGACTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAGAGACTTCAATTTTGTAGTTGCCATACTGTATTTTTCACCGACTTGAATTTTGTAATTGCTGTACTGTATTTAAACTTTCGGAGTTGTCAGTTGTTTAACATCACAAACTAGTCAAAAAAAGTTGATTCATTTCAGTTATTTCGCTAACTATTGTAAACATGAACATTTCTTTATCTTGGTATACTTAATCATTTGCATTTGCCAACCATTTAGAATGGAAAATCAGCTGCTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAAAGACTTAGAAAATTTGCAGCAGAATGTCAGGCCCAACCCAGTAAGGAAAACAAGGATGGCACAAATGACAGCATATATGGTGCAAACTTTTCTTGCAAAATATCGCCTTGGTTAGCTATGGGATGTCTCTCACCCCGTTCCATGTTTGATGAATTGAAGAAGTCCACTTCAAGGTTAATGTCTTGTCAATAGTTTTCTTATCCTGATACTAATGCCTGTGAGACCAATATCACTGGCTAACGCTACATTGGTTGTTGTGCTGCAGAACGATTTCTGCTGCCTCTGCCAAGAAAGATGGTGGTAGTGGCACTGGGCTGAACTGGCTGATGTACGAGCTGTTATGGAGGGATTTTTTCAGGTAATTTAGCATGCAACTTAGCTCCTATGATTGAGATGCTTGTTTCAGTTTCGTATAGTGTGATACTCGTTCCATCCTTTATGAAACAATTCCCGTCCTTTAAAATTATTCCTTGGATAACATTCTGTTTTCTGAATGCCAGATTCATCACCAAGAAATATAGTGCTGCAAAACAAAATAGTGCTGCTCCAGTAACTACTTGCGTAGGAGCTGCTGCTTAACGATGGTATACTCAAAAGGAGAATGAAGGTTTCCTTTTTGTAGCTTGATTTATTTTTTCCGGAAGTTTAGCTGTGGAATGTTAGAGTTGGACTGCCATTGAATTGAAGC</genome_strand>
        <mrna_strand>GATGA-TTGCCTTTAAAG-T-GAACAAATGCCCACG-ATTACGGAGG-TTTA-GGAGAAAGTGCCAGGGATTTGGAAGTAAGGAAGACAA-TGAGGCATTGGATCAATTGAAGGGATTGCCTGCCTAGAGGTGATGTGGAACCTGGGGAGATTCCTTC-TTTGTTGATTTGGGGCTCAATCCTAGTGCCACAATGGGTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAAACCAGCTGCTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTTCAGAGACTTAGAAAATTTGCAGCAGAATGTCAGGCCCAACCCAGTAAGGAAAACAAGGATGGCACAACTGACAGCATATATGGTGCAAACTTTTCTTGCAAAATATCGCCTTGGTTAGCTATGGGATGTCTCTCACCCCGTTCCATGTTTGATGAATTGAAAAAGTCCACTTCAAG............................................................................................AACGATTTCTGCTGCCTCTGGCAAGAAAGATGGTGGAAGTGGCACTGGGCTGAACTGGCTGATGTACGAGCTGTTATGGAGGGATTTTTTCAG..............................................................................................................................................GTTCATCACCAAGAAATATAGTGCTGCAAAACAAAATAGTGCTGCTCCAGTAACTGCTTGTGTAGGAGCTGCTGCTTAACGATGGTATATTCAAAAGGAGAATGAAGGTTTCCTTTTTGTATCTTGATTTATTTTTTCCAGAAGTTTAGCCGTGGAATGTTAGAGTTGGGCTGTCATTAGATTGAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E418599" ref_strand="+" ref_description="SGN-E418599 [STM-27-J24]">
      <seq>attggaggtaaggaagacaattgaggcattggatcaattgaggggattgcctgctagaggtgatgtggaacctggggagattccttctttggttgatttggggctcaatcctagtgccacaatgggtcagaatggaaaaccagctgctaatgcttcccttgtgggaggagagaatgaagcactgcagagacttagaaagtttgcagcagaatgtcaggtccaacccaataaggaaaacaaggatggcacaactgacagcatatatggtgcaaatttttcttgcaaaatatcaccttggttagctatgggatgtctctcaccccgttccatgtttgatgaattgaaaaagtccacttcaagaacgatttctgctgcctctggcaagaaagatggtggtagtggcactgggctgaactggctgatgtacgagctgttatggagggatttttttcacgttcatcaccaagaaatatagtgctgcaaaacaaaatagtgctactccagtaactgcttgtgtaggagctgctgcttaacgatggtatattcaaaaggagaatgaagttttcctttttgtagcttgatttatttttcccagaagtttagccgtggaatgttagagttgaactgtcattagattgaagcattcatcaatggtacattcttgtcttttgacaataagtgttggatataaaaaatttgtcgccatttcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="119582" stop="116754"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119282" g_stop="119153" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119152" i_stop="117854" i_length="1299">
            <donor d_prob="0.941" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117853" g_stop="117624" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="360" r_length="230" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117623" i_stop="117532" i_length="92">
            <donor d_prob="0.881" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117531" g_stop="117439" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="454" r_length="94" r_score="0.957"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117438" i_stop="117297" i_length="142">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.977" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117296" g_stop="117109" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="642" r_length="188" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E418599" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="0.902" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E418599" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119282" e_stop="119153"/>
          <exon e_start="117853" e_stop="117624"/>
          <exon e_start="117531" e_stop="117439"/>
          <exon e_start="117296" e_stop="117109"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGGAGGTAAGGAAGACAATTGAGGCATTGGATCAATTGAGGGGATTGCCTGCTAGAGGTGATGTGGAACCTGGGGAGATTCCTTCGTTGGTTGATTTGGGGCTCAATCCTAGTGCCACCATGGGTCAGGTATTACTTTGTTCGATCTCAAATATCGTAGAGGATTTAGGTTTATTCAGTATTGGATGAAAGTAGTTTTACCTTTGATGTCAAAGAACTTGTAATTTAACTGAAATGACATATTTGCGAGTGTTGGAATGAAACTGGTGTAAATGTAGTGTAACCGATAATAAGGATGATTCATATAGTTGAACCCAACAAGTTTGAGATTGAGCTACACTAGTAGTCCTTTAGTTTCACGTAGTTTTCCGTTTCTTAGACACTTCATTGGAAGTGGTAGAGATGATCAAGATTCCATTTTTATACGAATGGAAGTGATTCAAGTCAGAAATAACTGATGGTTTAATTCAACATATCTCTTGTATATGTATTCTGAACATTTGTTAGATAAAACCACATGTTTTAAGTAGGTTTAGTATTTGGCGTTTGAACATCAGTAATTTAAATGATCCTTGCTCTATCGTGTAGTGTCCTTCTATAGTTGTGTGCAGTGTTCAGGAAAGCAAGGCGAAGCAATGCGAGCCTTCTACGCTTCACAAACTAGAATGAGTATGTGAGTGCTTCATCGCCTAAAGCGTGAAGCAGGGCCTTATCACTTTTTTCCACTTCCTACTTCCCTGAACACTGGTTGTGTACACTGAGTATCCAGCTCATAGCTGTGACATTTTGTTGATCAATATGTTAATGTACTTCTTATCAGGCCGTCACCAACTAGGACACTACACACCAACTATAGTGCTCATAGAATAGACCAAAGAACTCTTATTTGTTAGCCTGAGAATATGTAATGTAGAAAGAACATCTTTTAGCCACGTTTGGAGGTTACTTTTTTAGTATTGCCTGTAGCACAGGCCACAGTGCACAATCACTTAAGAACTGTTGCTTGAATTTTGTAATTGCCTTACTGTATTGTAACTTTGGAACTGTAAGTTGTTTCACATCACAAACTAGTCAAACAAAGTTTATTTGTTTCAGTTACTTTGCAAACTATGGCAAACATGAACATTTCTTTATCTTTGCATAATCATTTGCATTTGCACATCATTTAGAATGACTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAGAGACTTCAATTTTGTAGTTGCCATACTGTATTTTTCACCGACTTGAATTTTGTAATTGCTGTACTGTATTTAAACTTTCGGAGTTGTCAGTTGTTTAACATCACAAACTAGTCAAAAAAAGTTGATTCATTTCAGTTATTTCGCTAACTATTGTAAACATGAACATTTCTTTATCTTGGTATACTTAATCATTTGCATTTGCCAACCATTTAGAATGGAAAATCAGCTGCTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAAAGACTTAGAAAATTTGCAGCAGAATGTCAGGCCCAACCCAGTAAGGAAAACAAGGATGGCACAAATGACAGCATATATGGTGCAAACTTTTCTTGCAAAATATCGCCTTGGTTAGCTATGGGATGTCTCTCACCCCGTTCCATGTTTGATGAATTGAAGAAGTCCACTTCAAGGTTAATGTCTTGTCAATAGTTTTCTTATCCTGATACTAATGCCTGTGAGACCAATATCACTGGCTAACGCTACATTGGTTGTTGTGCTGCAGAACGATTTCTGCTGCCTCTGCCAAGAAAGATGGTGGTAGTGGCACTGGGCTGAACTGGCTGATGTACGAGCTGTTATGGAGGGA-TTTTTTCAGGTAATTTAGCATGCAACTTAGCTCCTATGATTGAGATGCTTGTTTCAGTTTCGTATAGTGTGATACTCGTTCCATCCTTTATGAAACAATTCCCGTCCTTTAAAATTATTCCTTGGATAACATTCTGTTTTCTGAATGCCAGATTCATCACCAAGAAATATAGTGCTGCAAAACAAAATAGTGCTGCTCCAGTAACTACTTGCGTAGGAGCTGCTGCTTAACGATGGTATACTCAAAAGGAGAATGAAGGTTTCCTTTTTGTAGCTTGATTTATTTTTTCCGGAAGTTTAGCTGTGGAATGTTAGAGTTGGACTGCCATTGAATTGAAGC</genome_strand>
        <mrna_strand>ATTGGAGGTAAGGAAGACAATTGAGGCATTGGATCAATTGAGGGGATTGCCTGCTAGAGGTGATGTGGAACCTGGGGAGATTCCTTCTTTGGTTGATTTGGGGCTCAATCCTAGTGCCACAATGGGTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAAACCAGCTGCTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAGAGACTTAGAAAGTTTGCAGCAGAATGTCAGGTCCAACCCAATAAGGAAAACAAGGATGGCACAACTGACAGCATATATGGTGCAAATTTTTCTTGCAAAATATCACCTTGGTTAGCTATGGGATGTCTCTCACCCCGTTCCATGTTTGATGAATTGAAAAAGTCCACTTCAAG............................................................................................AACGATTTCTGCTGCCTCTGGCAAGAAAGATGGTGGTAGTGGCACTGGGCTGAACTGGCTGATGTACGAGCTGTTATGGAGGGATTTTTTTCAC..............................................................................................................................................GTTCATCACCAAGAAATATAGTGCTGCAAAACAAAATAGTGCTACTCCAGTAACTGCTTGTGTAGGAGCTGCTGCTTAACGATGGTATATTCAAAAGGAGAATGAAGTTTTCCTTTTTGTAGCTTGATTTATTTTTCCCAGAAGTTTAGCCGTGGAATGTTAGAGTTGAACTGTCATTAGATTGAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E418265" ref_strand="+" ref_description="SGN-E418265 [STM-27-M11]">
      <seq>attggaggtaaggaagacaattgaggcattggatcaattgaggggattgcctgctagaggtgatgtggaacctggggagattccttctttggttgatttggggctcaatcctagtgccacaatgggtcagaatggaaaaccagctgctaatgcttcccttgtgggaggagagaatgaagcactgcagagacttagaaagtttgcagcagaatgtcaggtccaacccaataaggaaaacaaggatggcacaactgacagcatatatggtgcaaatttttcttgcaaaatatcaccttggttagctatgggatgtctctcaccccgttccatgtttgatgaattgaaaaagtccacttcaagaacgatttctgctgcctctggcaagaaagatggtggtagtggcactgggctgaactggctgatgtacgagctgttatggagggatttttttcaggttcatcaccaagaaatatagtgctgcaaaacaaaatagtgctactccagtaactgcttgtgtaggagctgctgcttaacgatggtatattcaaaaggagaatgaagttttcctttttgtagcttgatttatttttcccagaagtttagccgtggaatgttagagttgaactgtcattagattgaagcattcatcaatggtacatttttgtcttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="119582" stop="116791"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119282" g_stop="119153" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119152" i_stop="117854" i_length="1299">
            <donor d_prob="0.941" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117853" g_stop="117624" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="360" r_length="230" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117623" i_stop="117532" i_length="92">
            <donor d_prob="0.881" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117531" g_stop="117439" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="454" r_length="94" r_score="0.968"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117438" i_stop="117297" i_length="142">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.977" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117296" g_stop="117109" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="642" r_length="188" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E418265" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E418265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119282" e_stop="119153"/>
          <exon e_start="117853" e_stop="117624"/>
          <exon e_start="117531" e_stop="117439"/>
          <exon e_start="117296" e_stop="117109"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGGAGGTAAGGAAGACAATTGAGGCATTGGATCAATTGAGGGGATTGCCTGCTAGAGGTGATGTGGAACCTGGGGAGATTCCTTCGTTGGTTGATTTGGGGCTCAATCCTAGTGCCACCATGGGTCAGGTATTACTTTGTTCGATCTCAAATATCGTAGAGGATTTAGGTTTATTCAGTATTGGATGAAAGTAGTTTTACCTTTGATGTCAAAGAACTTGTAATTTAACTGAAATGACATATTTGCGAGTGTTGGAATGAAACTGGTGTAAATGTAGTGTAACCGATAATAAGGATGATTCATATAGTTGAACCCAACAAGTTTGAGATTGAGCTACACTAGTAGTCCTTTAGTTTCACGTAGTTTTCCGTTTCTTAGACACTTCATTGGAAGTGGTAGAGATGATCAAGATTCCATTTTTATACGAATGGAAGTGATTCAAGTCAGAAATAACTGATGGTTTAATTCAACATATCTCTTGTATATGTATTCTGAACATTTGTTAGATAAAACCACATGTTTTAAGTAGGTTTAGTATTTGGCGTTTGAACATCAGTAATTTAAATGATCCTTGCTCTATCGTGTAGTGTCCTTCTATAGTTGTGTGCAGTGTTCAGGAAAGCAAGGCGAAGCAATGCGAGCCTTCTACGCTTCACAAACTAGAATGAGTATGTGAGTGCTTCATCGCCTAAAGCGTGAAGCAGGGCCTTATCACTTTTTTCCACTTCCTACTTCCCTGAACACTGGTTGTGTACACTGAGTATCCAGCTCATAGCTGTGACATTTTGTTGATCAATATGTTAATGTACTTCTTATCAGGCCGTCACCAACTAGGACACTACACACCAACTATAGTGCTCATAGAATAGACCAAAGAACTCTTATTTGTTAGCCTGAGAATATGTAATGTAGAAAGAACATCTTTTAGCCACGTTTGGAGGTTACTTTTTTAGTATTGCCTGTAGCACAGGCCACAGTGCACAATCACTTAAGAACTGTTGCTTGAATTTTGTAATTGCCTTACTGTATTGTAACTTTGGAACTGTAAGTTGTTTCACATCACAAACTAGTCAAACAAAGTTTATTTGTTTCAGTTACTTTGCAAACTATGGCAAACATGAACATTTCTTTATCTTTGCATAATCATTTGCATTTGCACATCATTTAGAATGACTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAGAGACTTCAATTTTGTAGTTGCCATACTGTATTTTTCACCGACTTGAATTTTGTAATTGCTGTACTGTATTTAAACTTTCGGAGTTGTCAGTTGTTTAACATCACAAACTAGTCAAAAAAAGTTGATTCATTTCAGTTATTTCGCTAACTATTGTAAACATGAACATTTCTTTATCTTGGTATACTTAATCATTTGCATTTGCCAACCATTTAGAATGGAAAATCAGCTGCTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAAAGACTTAGAAAATTTGCAGCAGAATGTCAGGCCCAACCCAGTAAGGAAAACAAGGATGGCACAAATGACAGCATATATGGTGCAAACTTTTCTTGCAAAATATCGCCTTGGTTAGCTATGGGATGTCTCTCACCCCGTTCCATGTTTGATGAATTGAAGAAGTCCACTTCAAGGTTAATGTCTTGTCAATAGTTTTCTTATCCTGATACTAATGCCTGTGAGACCAATATCACTGGCTAACGCTACATTGGTTGTTGTGCTGCAGAACGATTTCTGCTGCCTCTGCCAAGAAAGATGGTGGTAGTGGCACTGGGCTGAACTGGCTGATGTACGAGCTGTTATGGAGGGA-TTTTTTCAGGTAATTTAGCATGCAACTTAGCTCCTATGATTGAGATGCTTGTTTCAGTTTCGTATAGTGTGATACTCGTTCCATCCTTTATGAAACAATTCCCGTCCTTTAAAATTATTCCTTGGATAACATTCTGTTTTCTGAATGCCAGATTCATCACCAAGAAATATAGTGCTGCAAAACAAAATAGTGCTGCTCCAGTAACTACTTGCGTAGGAGCTGCTGCTTAACGATGGTATACTCAAAAGGAGAATGAAGGTTTCCTTTTTGTAGCTTGATTTATTTTTTCCGGAAGTTTAGCTGTGGAATGTTAGAGTTGGACTGCCATTGAATTGAAGC</genome_strand>
        <mrna_strand>ATTGGAGGTAAGGAAGACAATTGAGGCATTGGATCAATTGAGGGGATTGCCTGCTAGAGGTGATGTGGAACCTGGGGAGATTCCTTCTTTGGTTGATTTGGGGCTCAATCCTAGTGCCACAATGGGTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAAACCAGCTGCTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAGAGACTTAGAAAGTTTGCAGCAGAATGTCAGGTCCAACCCAATAAGGAAAACAAGGATGGCACAACTGACAGCATATATGGTGCAAATTTTTCTTGCAAAATATCACCTTGGTTAGCTATGGGATGTCTCTCACCCCGTTCCATGTTTGATGAATTGAAAAAGTCCACTTCAAG............................................................................................AACGATTTCTGCTGCCTCTGGCAAGAAAGATGGTGGTAGTGGCACTGGGCTGAACTGGCTGATGTACGAGCTGTTATGGAGGGATTTTTTTCAG..............................................................................................................................................GTTCATCACCAAGAAATATAGTGCTGCAAAACAAAATAGTGCTACTCCAGTAACTGCTTGTGTAGGAGCTGCTGCTTAACGATGGTATATTCAAAAGGAGAATGAAGTTTTCCTTTTTGTAGCTTGATTTATTTTTCCCAGAAGTTTAGCCGTGGAATGTTAGAGTTGAACTGTCATTAGATTGAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E344812" ref_strand="+" ref_description="SGN-E344812 [cTOF-21-A4]">
      <seq>ggtttggaggtgaagtatttctggggtagtacattgtatcatgttgatgatttgccttttaagttggagcaaatgcctacgaattacggaggctttagggagaaagtgcagggattggaggtaaggaagacaattgaggcattggatcaattgaggggattgcctgctagaggtgatgtggaacctggggagattccttcgttggttgatttggggctcaatcctagtgccaccatgggtcagaatggaaaatcagctgctaatgcttcccttgtgggaggagagaatgaagcactgcaaagacttagaaaatttgcagcagaatgtcaggcccaacccagtaaggaaaacaaggatggcacaaatgacagcatatatggtgcaaacttttcttgcaaaatatcgccttggttagctatgggatgtctctcaccccgttccatgtttgatgaattgaagaagtccacttcaagaacgatttctgctgcctctgccaagaaagatggtggtagtggcactgggctgaactggctgatgtacgagctgttatggagggattttttcagattcatcaccaagaaatatagtgctgcaacaaaaatagtgctgctccagtaactacttgcgtaggagctgctgcttaacgatggtatactcaaaggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="119695" stop="116897"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119395" g_stop="119153" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="243" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119152" i_stop="117854" i_length="1299">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117853" g_stop="117624" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="473" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117623" i_stop="117532" i_length="92">
            <donor d_prob="0.881" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117531" g_stop="117439" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="566" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117438" i_stop="117297" i_length="142">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117296" g_stop="117197" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="664" r_length="98" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E344812" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344812" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119395" e_stop="119153"/>
          <exon e_start="117853" e_stop="117624"/>
          <exon e_start="117531" e_stop="117439"/>
          <exon e_start="117296" e_stop="117197"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTGGAGGTGAAGTATTTCTGGGGTAGTACATTGTATCATGTTGATGATTTGCCTTTTAAGTTGGAGCAAATGCCTACGAATTACGGAGGCTTTAGGGAGAAAGTGCAGGGATTGGAGGTAAGGAAGACAATTGAGGCATTGGATCAATTGAGGGGATTGCCTGCTAGAGGTGATGTGGAACCTGGGGAGATTCCTTCGTTGGTTGATTTGGGGCTCAATCCTAGTGCCACCATGGGTCAGGTATTACTTTGTTCGATCTCAAATATCGTAGAGGATTTAGGTTTATTCAGTATTGGATGAAAGTAGTTTTACCTTTGATGTCAAAGAACTTGTAATTTAACTGAAATGACATATTTGCGAGTGTTGGAATGAAACTGGTGTAAATGTAGTGTAACCGATAATAAGGATGATTCATATAGTTGAACCCAACAAGTTTGAGATTGAGCTACACTAGTAGTCCTTTAGTTTCACGTAGTTTTCCGTTTCTTAGACACTTCATTGGAAGTGGTAGAGATGATCAAGATTCCATTTTTATACGAATGGAAGTGATTCAAGTCAGAAATAACTGATGGTTTAATTCAACATATCTCTTGTATATGTATTCTGAACATTTGTTAGATAAAACCACATGTTTTAAGTAGGTTTAGTATTTGGCGTTTGAACATCAGTAATTTAAATGATCCTTGCTCTATCGTGTAGTGTCCTTCTATAGTTGTGTGCAGTGTTCAGGAAAGCAAGGCGAAGCAATGCGAGCCTTCTACGCTTCACAAACTAGAATGAGTATGTGAGTGCTTCATCGCCTAAAGCGTGAAGCAGGGCCTTATCACTTTTTTCCACTTCCTACTTCCCTGAACACTGGTTGTGTACACTGAGTATCCAGCTCATAGCTGTGACATTTTGTTGATCAATATGTTAATGTACTTCTTATCAGGCCGTCACCAACTAGGACACTACACACCAACTATAGTGCTCATAGAATAGACCAAAGAACTCTTATTTGTTAGCCTGAGAATATGTAATGTAGAAAGAACATCTTTTAGCCACGTTTGGAGGTTACTTTTTTAGTATTGCCTGTAGCACAGGCCACAGTGCACAATCACTTAAGAACTGTTGCTTGAATTTTGTAATTGCCTTACTGTATTGTAACTTTGGAACTGTAAGTTGTTTCACATCACAAACTAGTCAAACAAAGTTTATTTGTTTCAGTTACTTTGCAAACTATGGCAAACATGAACATTTCTTTATCTTTGCATAATCATTTGCATTTGCACATCATTTAGAATGACTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAGAGACTTCAATTTTGTAGTTGCCATACTGTATTTTTCACCGACTTGAATTTTGTAATTGCTGTACTGTATTTAAACTTTCGGAGTTGTCAGTTGTTTAACATCACAAACTAGTCAAAAAAAGTTGATTCATTTCAGTTATTTCGCTAACTATTGTAAACATGAACATTTCTTTATCTTGGTATACTTAATCATTTGCATTTGCCAACCATTTAGAATGGAAAATCAGCTGCTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAAAGACTTAGAAAATTTGCAGCAGAATGTCAGGCCCAACCCAGTAAGGAAAACAAGGATGGCACAAATGACAGCATATATGGTGCAAACTTTTCTTGCAAAATATCGCCTTGGTTAGCTATGGGATGTCTCTCACCCCGTTCCATGTTTGATGAATTGAAGAAGTCCACTTCAAGGTTAATGTCTTGTCAATAGTTTTCTTATCCTGATACTAATGCCTGTGAGACCAATATCACTGGCTAACGCTACATTGGTTGTTGTGCTGCAGAACGATTTCTGCTGCCTCTGCCAAGAAAGATGGTGGTAGTGGCACTGGGCTGAACTGGCTGATGTACGAGCTGTTATGGAGGGATTTTTTCAGGTAATTTAGCATGCAACTTAGCTCCTATGATTGAGATGCTTGTTTCAGTTTCGTATAGTGTGATACTCGTTCCATCCTTTATGAAACAATTCCCGTCCTTTAAAATTATTCCTTGGATAACATTCTGTTTTCTGAATGCCAGATTCATCACCAAGAAATATAGTGCTGCAAAACAAAATAGTGCTGCTCCAGTAACTACTTGCGTAGGAGCTGCTGCTTAACGATGGTATACTCAAAAGGAG</genome_strand>
        <mrna_strand>GGTTTGGAGGTGAAGTATTTCTGGGGTAGTACATTGTATCATGTTGATGATTTGCCTTTTAAGTTGGAGCAAATGCCTACGAATTACGGAGGCTTTAGGGAGAAAGTGCAGGGATTGGAGGTAAGGAAGACAATTGAGGCATTGGATCAATTGAGGGGATTGCCTGCTAGAGGTGATGTGGAACCTGGGGAGATTCCTTCGTTGGTTGATTTGGGGCTCAATCCTAGTGCCACCATGGGTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAAATCAGCTGCTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAAAGACTTAGAAAATTTGCAGCAGAATGTCAGGCCCAACCCAGTAAGGAAAACAAGGATGGCACAAATGACAGCATATATGGTGCAAACTTTTCTTGCAAAATATCGCCTTGGTTAGCTATGGGATGTCTCTCACCCCGTTCCATGTTTGATGAATTGAAGAAGTCCACTTCAAG............................................................................................AACGATTTCTGCTGCCTCTGCCAAGAAAGATGGTGGTAGTGGCACTGGGCTGAACTGGCTGATGTACGAGCTGTTATGGAGGGATTTTTTCAG..............................................................................................................................................ATTCATCACCAAGAAATATAGTGCTGCAACA-AAAATAGTGCTGCTCCAGTAACTACTTGCGTAGGAGCTGCTGCTTAACGATGGTATACTC-AAAGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E404669" ref_strand="+" ref_description="SGN-E404669 [PPC-14-J14]">
      <seq>ttgtatcatgttgatgatttgccttttaagttggagcaaatgccaacgaattacggagggtttaaggagaaagtgcagggattggaggtaaggaagacaattgaggcattggatcaactgaggggattgcctgctagaggtgatgtggaacctggggagattccttctttggttgatttggggctcaatcctagtgccacaatgggtcagaatggaaaaccagctgctaatgcttcccttgtgggaggagagaatgaagcactgcagagacttagaaagtttgcagcagaatgtcaggtccaacccaataaggaaaacaaggatggcacaactgacagcatatatggtgcaaatttttcttgcaaaatatcaccttggttagctatgggatgtctctcaccccgttccatgtttgatgaattgaaaaagtccacttcaagaacgatttctgctgcctctggcaagaaagatggtggtagtggcactgggctgaactggctgatgtacgagctgttatggagggattttttcaggttcatcaccaagaaatatagtgctgcaaaacaaaatagtgctactccagtaactgcttgtgtaagagctgctgcttaacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="119662" stop="116916"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119362" g_stop="119153" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119152" i_stop="117854" i_length="1299">
            <donor d_prob="0.941" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117853" g_stop="117624" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="440" r_length="230" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117623" i_stop="117532" i_length="92">
            <donor d_prob="0.881" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117531" g_stop="117439" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="533" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117438" i_stop="117297" i_length="142">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117296" g_stop="117216" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="614" r_length="81" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E404669" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E404669" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119362" e_stop="119153"/>
          <exon e_start="117853" e_stop="117624"/>
          <exon e_start="117531" e_stop="117439"/>
          <exon e_start="117296" e_stop="117216"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTATCATGTTGATGATTTGCCTTTTAAGTTGGAGCAAATGCCTACGAATTACGGAGGCTTTAGGGAGAAAGTGCAGGGATTGGAGGTAAGGAAGACAATTGAGGCATTGGATCAATTGAGGGGATTGCCTGCTAGAGGTGATGTGGAACCTGGGGAGATTCCTTCGTTGGTTGATTTGGGGCTCAATCCTAGTGCCACCATGGGTCAGGTATTACTTTGTTCGATCTCAAATATCGTAGAGGATTTAGGTTTATTCAGTATTGGATGAAAGTAGTTTTACCTTTGATGTCAAAGAACTTGTAATTTAACTGAAATGACATATTTGCGAGTGTTGGAATGAAACTGGTGTAAATGTAGTGTAACCGATAATAAGGATGATTCATATAGTTGAACCCAACAAGTTTGAGATTGAGCTACACTAGTAGTCCTTTAGTTTCACGTAGTTTTCCGTTTCTTAGACACTTCATTGGAAGTGGTAGAGATGATCAAGATTCCATTTTTATACGAATGGAAGTGATTCAAGTCAGAAATAACTGATGGTTTAATTCAACATATCTCTTGTATATGTATTCTGAACATTTGTTAGATAAAACCACATGTTTTAAGTAGGTTTAGTATTTGGCGTTTGAACATCAGTAATTTAAATGATCCTTGCTCTATCGTGTAGTGTCCTTCTATAGTTGTGTGCAGTGTTCAGGAAAGCAAGGCGAAGCAATGCGAGCCTTCTACGCTTCACAAACTAGAATGAGTATGTGAGTGCTTCATCGCCTAAAGCGTGAAGCAGGGCCTTATCACTTTTTTCCACTTCCTACTTCCCTGAACACTGGTTGTGTACACTGAGTATCCAGCTCATAGCTGTGACATTTTGTTGATCAATATGTTAATGTACTTCTTATCAGGCCGTCACCAACTAGGACACTACACACCAACTATAGTGCTCATAGAATAGACCAAAGAACTCTTATTTGTTAGCCTGAGAATATGTAATGTAGAAAGAACATCTTTTAGCCACGTTTGGAGGTTACTTTTTTAGTATTGCCTGTAGCACAGGCCACAGTGCACAATCACTTAAGAACTGTTGCTTGAATTTTGTAATTGCCTTACTGTATTGTAACTTTGGAACTGTAAGTTGTTTCACATCACAAACTAGTCAAACAAAGTTTATTTGTTTCAGTTACTTTGCAAACTATGGCAAACATGAACATTTCTTTATCTTTGCATAATCATTTGCATTTGCACATCATTTAGAATGACTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAGAGACTTCAATTTTGTAGTTGCCATACTGTATTTTTCACCGACTTGAATTTTGTAATTGCTGTACTGTATTTAAACTTTCGGAGTTGTCAGTTGTTTAACATCACAAACTAGTCAAAAAAAGTTGATTCATTTCAGTTATTTCGCTAACTATTGTAAACATGAACATTTCTTTATCTTGGTATACTTAATCATTTGCATTTGCCAACCATTTAGAATGGAAAATCAGCTGCTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAAAGACTTAGAAAATTTGCAGCAGAATGTCAGGCCCAACCCAGTAAGGAAAACAAGGATGGCACAAATGACAGCATATATGGTGCAAACTTTTCTTGCAAAATATCGCCTTGGTTAGCTATGGGATGTCTCTCACCCCGTTCCATGTTTGATGAATTGAAGAAGTCCACTTCAAGGTTAATGTCTTGTCAATAGTTTTCTTATCCTGATACTAATGCCTGTGAGACCAATATCACTGGCTAACGCTACATTGGTTGTTGTGCTGCAGAACGATTTCTGCTGCCTCTGCCAAGAAAGATGGTGGTAGTGGCACTGGGCTGAACTGGCTGATGTACGAGCTGTTATGGAGGGATTTTTTCAGGTAATTTAGCATGCAACTTAGCTCCTATGATTGAGATGCTTGTTTCAGTTTCGTATAGTGTGATACTCGTTCCATCCTTTATGAAACAATTCCCGTCCTTTAAAATTATTCCTTGGATAACATTCTGTTTTCTGAATGCCAGATTCATCACCAAGAAATATAGTGCTGCAAAACAAAATAGTGCTGCTCCAGTAACTACTTGCGTAGGAGCTGCTGCTTAACG</genome_strand>
        <mrna_strand>TTGTATCATGTTGATGATTTGCCTTTTAAGTTGGAGCAAATGCCAACGAATTACGGAGGGTTTAAGGAGAAAGTGCAGGGATTGGAGGTAAGGAAGACAATTGAGGCATTGGATCAACTGAGGGGATTGCCTGCTAGAGGTGATGTGGAACCTGGGGAGATTCCTTCTTTGGTTGATTTGGGGCTCAATCCTAGTGCCACAATGGGTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAAACCAGCTGCTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAGAGACTTAGAAAGTTTGCAGCAGAATGTCAGGTCCAACCCAATAAGGAAAACAAGGATGGCACAACTGACAGCATATATGGTGCAAATTTTTCTTGCAAAATATCACCTTGGTTAGCTATGGGATGTCTCTCACCCCGTTCCATGTTTGATGAATTGAAAAAGTCCACTTCAAG............................................................................................AACGATTTCTGCTGCCTCTGGCAAGAAAGATGGTGGTAGTGGCACTGGGCTGAACTGGCTGATGTACGAGCTGTTATGGAGGGATTTTTTCAG..............................................................................................................................................GTTCATCACCAAGAAATATAGTGCTGCAAAACAAAATAGTGCTACTCCAGTAACTGCTTGTGTAAGAGCTGCTGCTTAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E441194" ref_strand="+" ref_description="SGN-E441194 [cSTA-29-F5]">
      <seq>attggaggtaaggaagacaattgaggcattggatcaattgaggggattgcctgctagaggtgatgtggaacctggggagattccttctttggttgatttggggctcaatcctagtgccacaatgggtcagaatggaaaaccagctgctaatgcttcccttgtgggaggagagaatgaagcactgcatagacttagaaagtttgcagcagaatgtcaggtccaacccaataaggaaaacaaggatggcacaactgacagcatatatggtgcaaatttttcttgcaaaatatcaccttggttagctatgggatgtctctcaccccgttccatgtttgatgaattgaaaaagtccacttcaagaacgatttctgctgcctctggcaagaaagatggtggtagtggcactgggctgaactggctgatgtacgagctgttatggagggatttttttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="119582" stop="117140"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119282" g_stop="119153" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119152" i_stop="117854" i_length="1299">
            <donor d_prob="0.941" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117853" g_stop="117624" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="360" r_length="230" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117623" i_stop="117532" i_length="92">
            <donor d_prob="0.881" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117531" g_stop="117440" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="453" r_length="93" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E441194" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E441194" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119282" e_stop="119153"/>
          <exon e_start="117853" e_stop="117624"/>
          <exon e_start="117531" e_stop="117440"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGGAGGTAAGGAAGACAATTGAGGCATTGGATCAATTGAGGGGATTGCCTGCTAGAGGTGATGTGGAACCTGGGGAGATTCCTTCGTTGGTTGATTTGGGGCTCAATCCTAGTGCCACCATGGGTCAGGTATTACTTTGTTCGATCTCAAATATCGTAGAGGATTTAGGTTTATTCAGTATTGGATGAAAGTAGTTTTACCTTTGATGTCAAAGAACTTGTAATTTAACTGAAATGACATATTTGCGAGTGTTGGAATGAAACTGGTGTAAATGTAGTGTAACCGATAATAAGGATGATTCATATAGTTGAACCCAACAAGTTTGAGATTGAGCTACACTAGTAGTCCTTTAGTTTCACGTAGTTTTCCGTTTCTTAGACACTTCATTGGAAGTGGTAGAGATGATCAAGATTCCATTTTTATACGAATGGAAGTGATTCAAGTCAGAAATAACTGATGGTTTAATTCAACATATCTCTTGTATATGTATTCTGAACATTTGTTAGATAAAACCACATGTTTTAAGTAGGTTTAGTATTTGGCGTTTGAACATCAGTAATTTAAATGATCCTTGCTCTATCGTGTAGTGTCCTTCTATAGTTGTGTGCAGTGTTCAGGAAAGCAAGGCGAAGCAATGCGAGCCTTCTACGCTTCACAAACTAGAATGAGTATGTGAGTGCTTCATCGCCTAAAGCGTGAAGCAGGGCCTTATCACTTTTTTCCACTTCCTACTTCCCTGAACACTGGTTGTGTACACTGAGTATCCAGCTCATAGCTGTGACATTTTGTTGATCAATATGTTAATGTACTTCTTATCAGGCCGTCACCAACTAGGACACTACACACCAACTATAGTGCTCATAGAATAGACCAAAGAACTCTTATTTGTTAGCCTGAGAATATGTAATGTAGAAAGAACATCTTTTAGCCACGTTTGGAGGTTACTTTTTTAGTATTGCCTGTAGCACAGGCCACAGTGCACAATCACTTAAGAACTGTTGCTTGAATTTTGTAATTGCCTTACTGTATTGTAACTTTGGAACTGTAAGTTGTTTCACATCACAAACTAGTCAAACAAAGTTTATTTGTTTCAGTTACTTTGCAAACTATGGCAAACATGAACATTTCTTTATCTTTGCATAATCATTTGCATTTGCACATCATTTAGAATGACTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAGAGACTTCAATTTTGTAGTTGCCATACTGTATTTTTCACCGACTTGAATTTTGTAATTGCTGTACTGTATTTAAACTTTCGGAGTTGTCAGTTGTTTAACATCACAAACTAGTCAAAAAAAGTTGATTCATTTCAGTTATTTCGCTAACTATTGTAAACATGAACATTTCTTTATCTTGGTATACTTAATCATTTGCATTTGCCAACCATTTAGAATGGAAAATCAGCTGCTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAAAGACTTAGAAAATTTGCAGCAGAATGTCAGGCCCAACCCAGTAAGGAAAACAAGGATGGCACAAATGACAGCATATATGGTGCAAACTTTTCTTGCAAAATATCGCCTTGGTTAGCTATGGGATGTCTCTCACCCCGTTCCATGTTTGATGAATTGAAGAAGTCCACTTCAAGGTTAATGTCTTGTCAATAGTTTTCTTATCCTGATACTAATGCCTGTGAGACCAATATCACTGGCTAACGCTACATTGGTTGTTGTGCTGCAGAACGATTTCTGCTGCCTCTGCCAAGAAAGATGGTGGTAGTGGCACTGGGCTGAACTGGCTGATGTACGAGCTGTTATGGAGGGA-TTTTTTCA</genome_strand>
        <mrna_strand>ATTGGAGGTAAGGAAGACAATTGAGGCATTGGATCAATTGAGGGGATTGCCTGCTAGAGGTGATGTGGAACCTGGGGAGATTCCTTCTTTGGTTGATTTGGGGCTCAATCCTAGTGCCACAATGGGTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAAACCAGCTGCTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCATAGACTTAGAAAGTTTGCAGCAGAATGTCAGGTCCAACCCAATAAGGAAAACAAGGATGGCACAACTGACAGCATATATGGTGCAAATTTTTCTTGCAAAATATCACCTTGGTTAGCTATGGGATGTCTCTCACCCCGTTCCATGTTTGATGAATTGAAAAAGTCCACTTCAAG............................................................................................AACGATTTCTGCTGCCTCTGGCAAGAAAGATGGTGGTAGTGGCACTGGGCTGAACTGGCTGATGTACGAGCTGTTATGGAGGGATTTTTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E442330" ref_strand="+" ref_description="SGN-E442330 [cSTA-33-C17]">
      <seq>attggaggtaaggaagacaattgaggcattggatcaattgaggggattgcctgctagaggtgatgtggaacctggggagattccttctttggttgatttggggctcaatcctagtgccacaatgggtcagaatggaaaaccagctgctaatgcttcccttgtgggaggagagaatgaagcactgcagagacttagaaagtttgcagcagaatgtcaggtccaacccaataaggaaaacaaggatggcacaactgacagcatatatggtgcaaatttttcttgcaaaatatcaccttggttagctatgggatgtctctcaccccgttccatgtttgatgaattgaaaaagtccacttcaagaacgatttctgctgcctctggcaagaaagatggtggtagtggcactgggctgaactggctgatgtacgagctgttatggagggattttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="119582" stop="117142"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119282" g_stop="119153" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119152" i_stop="117854" i_length="1299">
            <donor d_prob="0.941" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117853" g_stop="117624" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="360" r_length="230" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117623" i_stop="117532" i_length="92">
            <donor d_prob="0.881" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117531" g_stop="117441" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="451" r_length="91" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E442330" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E442330" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119282" e_stop="119153"/>
          <exon e_start="117853" e_stop="117624"/>
          <exon e_start="117531" e_stop="117441"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGGAGGTAAGGAAGACAATTGAGGCATTGGATCAATTGAGGGGATTGCCTGCTAGAGGTGATGTGGAACCTGGGGAGATTCCTTCGTTGGTTGATTTGGGGCTCAATCCTAGTGCCACCATGGGTCAGGTATTACTTTGTTCGATCTCAAATATCGTAGAGGATTTAGGTTTATTCAGTATTGGATGAAAGTAGTTTTACCTTTGATGTCAAAGAACTTGTAATTTAACTGAAATGACATATTTGCGAGTGTTGGAATGAAACTGGTGTAAATGTAGTGTAACCGATAATAAGGATGATTCATATAGTTGAACCCAACAAGTTTGAGATTGAGCTACACTAGTAGTCCTTTAGTTTCACGTAGTTTTCCGTTTCTTAGACACTTCATTGGAAGTGGTAGAGATGATCAAGATTCCATTTTTATACGAATGGAAGTGATTCAAGTCAGAAATAACTGATGGTTTAATTCAACATATCTCTTGTATATGTATTCTGAACATTTGTTAGATAAAACCACATGTTTTAAGTAGGTTTAGTATTTGGCGTTTGAACATCAGTAATTTAAATGATCCTTGCTCTATCGTGTAGTGTCCTTCTATAGTTGTGTGCAGTGTTCAGGAAAGCAAGGCGAAGCAATGCGAGCCTTCTACGCTTCACAAACTAGAATGAGTATGTGAGTGCTTCATCGCCTAAAGCGTGAAGCAGGGCCTTATCACTTTTTTCCACTTCCTACTTCCCTGAACACTGGTTGTGTACACTGAGTATCCAGCTCATAGCTGTGACATTTTGTTGATCAATATGTTAATGTACTTCTTATCAGGCCGTCACCAACTAGGACACTACACACCAACTATAGTGCTCATAGAATAGACCAAAGAACTCTTATTTGTTAGCCTGAGAATATGTAATGTAGAAAGAACATCTTTTAGCCACGTTTGGAGGTTACTTTTTTAGTATTGCCTGTAGCACAGGCCACAGTGCACAATCACTTAAGAACTGTTGCTTGAATTTTGTAATTGCCTTACTGTATTGTAACTTTGGAACTGTAAGTTGTTTCACATCACAAACTAGTCAAACAAAGTTTATTTGTTTCAGTTACTTTGCAAACTATGGCAAACATGAACATTTCTTTATCTTTGCATAATCATTTGCATTTGCACATCATTTAGAATGACTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAGAGACTTCAATTTTGTAGTTGCCATACTGTATTTTTCACCGACTTGAATTTTGTAATTGCTGTACTGTATTTAAACTTTCGGAGTTGTCAGTTGTTTAACATCACAAACTAGTCAAAAAAAGTTGATTCATTTCAGTTATTTCGCTAACTATTGTAAACATGAACATTTCTTTATCTTGGTATACTTAATCATTTGCATTTGCCAACCATTTAGAATGGAAAATCAGCTGCTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAAAGACTTAGAAAATTTGCAGCAGAATGTCAGGCCCAACCCAGTAAGGAAAACAAGGATGGCACAAATGACAGCATATATGGTGCAAACTTTTCTTGCAAAATATCGCCTTGGTTAGCTATGGGATGTCTCTCACCCCGTTCCATGTTTGATGAATTGAAGAAGTCCACTTCAAGGTTAATGTCTTGTCAATAGTTTTCTTATCCTGATACTAATGCCTGTGAGACCAATATCACTGGCTAACGCTACATTGGTTGTTGTGCTGCAGAACGATTTCTGCTGCCTCTGCCAAGAAAGATGGTGGTAGTGGCACTGGGCTGAACTGGCTGATGTACGAGCTGTTATGGAGGGATTTTTTC</genome_strand>
        <mrna_strand>ATTGGAGGTAAGGAAGACAATTGAGGCATTGGATCAATTGAGGGGATTGCCTGCTAGAGGTGATGTGGAACCTGGGGAGATTCCTTCTTTGGTTGATTTGGGGCTCAATCCTAGTGCCACAATGGGTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAAACCAGCTGCTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAGAGACTTAGAAAGTTTGCAGCAGAATGTCAGGTCCAACCCAATAAGGAAAACAAGGATGGCACAACTGACAGCATATATGGTGCAAATTTTTCTTGCAAAATATCACCTTGGTTAGCTATGGGATGTCTCTCACCCCGTTCCATGTTTGATGAATTGAAAAAGTCCACTTCAAG............................................................................................AACGATTTCTGCTGCCTCTGGCAAGAAAGATGGTGGTAGTGGCACTGGGCTGAACTGGCTGATGTACGAGCTGTTATGGAGGGATTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E284051" ref_strand="+" ref_description="SGN-E284051 [cLER-13-O5]">
      <seq>aagaatctacaggcaagagggtctgatcttgttgttagaattgggaagccggagactgtgttggtggaattagctaaagctgttggagctgaagctgtgtatgctcatagggaggtttcacatgatgaggttaaaggggaagataagattgatgctgtaatgaaggatgagggtttggaggtgaagtatttctggggtagtacattgtatcatgttgatgatttgccttttaagttggagcaaatgcctacgaattacggaggctttagggagaaagtgcagggattggaggtaaggaagacaattgaggcattggatcaattgaggggattgcctgctagaggtgatgtggaacctggggagattccttcgatggttgatttggggctcaatcctagtgccaccatgggtcagaatggagaatcagctgctaatgcttcccttgtgggaggagagaatgaagcactgctgagacttagaaaatttgcagcagaatgtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="119866" stop="117468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119566" g_stop="119153" g_length="414"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="414" r_length="414" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119152" i_stop="117854" i_length="1299">
            <donor d_prob="0.941" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117853" g_stop="117768" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="500" r_length="86" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E284051" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284051" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119566" e_stop="119153"/>
          <exon e_start="117853" e_stop="117768"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATCTACAGGCAAGAGGGTCTGATCTTGTTGTTAGAATTGGGAAGCCGGAGACTGTGTTGGTGGAATTAGCTAAAGCTGTTGGAGCTGAAGCTGTGTATGCTCATAGGGAGGTTTCACATGATGAGGTTAAAGGGGAAGATAAGATTGATGCTGTAATGAAGGATGAGGGTTTGGAGGTGAAGTATTTCTGGGGTAGTACATTGTATCATGTTGATGATTTGCCTTTTAAGTTGGAGCAAATGCCTACGAATTACGGAGGCTTTAGGGAGAAAGTGCAGGGATTGGAGGTAAGGAAGACAATTGAGGCATTGGATCAATTGAGGGGATTGCCTGCTAGAGGTGATGTGGAACCTGGGGAGATTCCTTCGTTGGTTGATTTGGGGCTCAATCCTAGTGCCACCATGGGTCAGGTATTACTTTGTTCGATCTCAAATATCGTAGAGGATTTAGGTTTATTCAGTATTGGATGAAAGTAGTTTTACCTTTGATGTCAAAGAACTTGTAATTTAACTGAAATGACATATTTGCGAGTGTTGGAATGAAACTGGTGTAAATGTAGTGTAACCGATAATAAGGATGATTCATATAGTTGAACCCAACAAGTTTGAGATTGAGCTACACTAGTAGTCCTTTAGTTTCACGTAGTTTTCCGTTTCTTAGACACTTCATTGGAAGTGGTAGAGATGATCAAGATTCCATTTTTATACGAATGGAAGTGATTCAAGTCAGAAATAACTGATGGTTTAATTCAACATATCTCTTGTATATGTATTCTGAACATTTGTTAGATAAAACCACATGTTTTAAGTAGGTTTAGTATTTGGCGTTTGAACATCAGTAATTTAAATGATCCTTGCTCTATCGTGTAGTGTCCTTCTATAGTTGTGTGCAGTGTTCAGGAAAGCAAGGCGAAGCAATGCGAGCCTTCTACGCTTCACAAACTAGAATGAGTATGTGAGTGCTTCATCGCCTAAAGCGTGAAGCAGGGCCTTATCACTTTTTTCCACTTCCTACTTCCCTGAACACTGGTTGTGTACACTGAGTATCCAGCTCATAGCTGTGACATTTTGTTGATCAATATGTTAATGTACTTCTTATCAGGCCGTCACCAACTAGGACACTACACACCAACTATAGTGCTCATAGAATAGACCAAAGAACTCTTATTTGTTAGCCTGAGAATATGTAATGTAGAAAGAACATCTTTTAGCCACGTTTGGAGGTTACTTTTTTAGTATTGCCTGTAGCACAGGCCACAGTGCACAATCACTTAAGAACTGTTGCTTGAATTTTGTAATTGCCTTACTGTATTGTAACTTTGGAACTGTAAGTTGTTTCACATCACAAACTAGTCAAACAAAGTTTATTTGTTTCAGTTACTTTGCAAACTATGGCAAACATGAACATTTCTTTATCTTTGCATAATCATTTGCATTTGCACATCATTTAGAATGACTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAGAGACTTCAATTTTGTAGTTGCCATACTGTATTTTTCACCGACTTGAATTTTGTAATTGCTGTACTGTATTTAAACTTTCGGAGTTGTCAGTTGTTTAACATCACAAACTAGTCAAAAAAAGTTGATTCATTTCAGTTATTTCGCTAACTATTGTAAACATGAACATTTCTTTATCTTGGTATACTTAATCATTTGCATTTGCCAACCATTTAGAATGGAAAATCAGCTGCTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAAAGACTTAGAAAATTTGCAGCAGAATGTCA</genome_strand>
        <mrna_strand>AAGAATCTACAGGCAAGAGGGTCTGATCTTGTTGTTAGAATTGGGAAGCCGGAGACTGTGTTGGTGGAATTAGCTAAAGCTGTTGGAGCTGAAGCTGTGTATGCTCATAGGGAGGTTTCACATGATGAGGTTAAAGGGGAAGATAAGATTGATGCTGTAATGAAGGATGAGGGTTTGGAGGTGAAGTATTTCTGGGGTAGTACATTGTATCATGTTGATGATTTGCCTTTTAAGTTGGAGCAAATGCCTACGAATTACGGAGGCTTTAGGGAGAAAGTGCAGGGATTGGAGGTAAGGAAGACAATTGAGGCATTGGATCAATTGAGGGGATTGCCTGCTAGAGGTGATGTGGAACCTGGGGAGATTCCTTCGATGGTTGATTTGGGGCTCAATCCTAGTGCCACCATGGGTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAGAATCAGCTGCTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCTGAGACTTAGAAAATTTGCAGCAGAATGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E294288" ref_strand="-" ref_description="SGN-E294288 [cLET-14-D8](-)">
      <seq>gttggagctgaagctgtgtatgctcatagggaggtttcacatgatgaggttgaaggggaagataagattgatgctgtaatgaaggatgagggtttggaggtgaagtatttctggggtagtacattgtatcatgttgatgattagccttttaagttggagcaaatgcctaccaattacggaggctttatggagaaagtgcagggattggaggtaaggaagacacttgaggcattggatcaattgaggggattgcctgctagatgtgatgtggaacctggggagattccttcgttgattgatttggggctcaatcctactgccactcatgggtcagaatggaaaatcagctgctaatgcttcccttgtgggaggagagaatgaagcactgtacagactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="119785" stop="117491"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119485" g_stop="119153" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="334" r_length="334" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119152" i_stop="117854" i_length="1299">
            <donor d_prob="0.941" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117853" g_stop="117791" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="397" r_length="63" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E294288" ref_strand="-">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294288" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="119485" e_stop="119153"/>
          <exon e_start="117853" e_stop="117791"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGGAGCTGAAGCTGTGTATGCTCATAGGGAGGTTTCACATGATGAGGTTAAAGGGGAAGATAAGATTGATGCTGTAATGAAGGATGAGGGTTTGGAGGTGAAGTATTTCTGGGGTAGTACATTGTATCATGTTGATGATTTGCCTTTTAAGTTGGAGCAAATGCCTACGAATTACGGAGGCTTTAGGGAGAAAGTGCAGGGATTGGAGGTAAGGAAGACAATTGAGGCATTGGATCAATTGAGGGGATTGCCTGCTAGAGGTGATGTGGAACCTGGGGAGATTCCTTCGTTGGTTGATTTGGGGCTCAATCCTAGTGCCAC-CATGGGTCAGGTATTACTTTGTTCGATCTCAAATATCGTAGAGGATTTAGGTTTATTCAGTATTGGATGAAAGTAGTTTTACCTTTGATGTCAAAGAACTTGTAATTTAACTGAAATGACATATTTGCGAGTGTTGGAATGAAACTGGTGTAAATGTAGTGTAACCGATAATAAGGATGATTCATATAGTTGAACCCAACAAGTTTGAGATTGAGCTACACTAGTAGTCCTTTAGTTTCACGTAGTTTTCCGTTTCTTAGACACTTCATTGGAAGTGGTAGAGATGATCAAGATTCCATTTTTATACGAATGGAAGTGATTCAAGTCAGAAATAACTGATGGTTTAATTCAACATATCTCTTGTATATGTATTCTGAACATTTGTTAGATAAAACCACATGTTTTAAGTAGGTTTAGTATTTGGCGTTTGAACATCAGTAATTTAAATGATCCTTGCTCTATCGTGTAGTGTCCTTCTATAGTTGTGTGCAGTGTTCAGGAAAGCAAGGCGAAGCAATGCGAGCCTTCTACGCTTCACAAACTAGAATGAGTATGTGAGTGCTTCATCGCCTAAAGCGTGAAGCAGGGCCTTATCACTTTTTTCCACTTCCTACTTCCCTGAACACTGGTTGTGTACACTGAGTATCCAGCTCATAGCTGTGACATTTTGTTGATCAATATGTTAATGTACTTCTTATCAGGCCGTCACCAACTAGGACACTACACACCAACTATAGTGCTCATAGAATAGACCAAAGAACTCTTATTTGTTAGCCTGAGAATATGTAATGTAGAAAGAACATCTTTTAGCCACGTTTGGAGGTTACTTTTTTAGTATTGCCTGTAGCACAGGCCACAGTGCACAATCACTTAAGAACTGTTGCTTGAATTTTGTAATTGCCTTACTGTATTGTAACTTTGGAACTGTAAGTTGTTTCACATCACAAACTAGTCAAACAAAGTTTATTTGTTTCAGTTACTTTGCAAACTATGGCAAACATGAACATTTCTTTATCTTTGCATAATCATTTGCATTTGCACATCATTTAGAATGACTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAGAGACTTCAATTTTGTAGTTGCCATACTGTATTTTTCACCGACTTGAATTTTGTAATTGCTGTACTGTATTTAAACTTTCGGAGTTGTCAGTTGTTTAACATCACAAACTAGTCAAAAAAAGTTGATTCATTTCAGTTATTTCGCTAACTATTGTAAACATGAACATTTCTTTATCTTGGTATACTTAATCATTTGCATTTGCCAACCATTTAGAATGGAAAATCAGCTGCTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAAAGACTT</genome_strand>
        <mrna_strand>GTTGGAGCTGAAGCTGTGTATGCTCATAGGGAGGTTTCACATGATGAGGTTGAAGGGGAAGATAAGATTGATGCTGTAATGAAGGATGAGGGTTTGGAGGTGAAGTATTTCTGGGGTAGTACATTGTATCATGTTGATGATTAGCCTTTTAAGTTGGAGCAAATGCCTACCAATTACGGAGGCTTTATGGAGAAAGTGCAGGGATTGGAGGTAAGGAAGACACTTGAGGCATTGGATCAATTGAGGGGATTGCCTGCTAGATGTGATGTGGAACCTGGGGAGATTCCTTCGTTGATTGATTTGGGGCTCAATCCTACTGCCACTCATGGGTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAAATCAGCTGCTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGTACAGACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E294287" ref_strand="+" ref_description="SGN-E294287 [cLET-14-D8]">
      <seq>gttggagctgaagctgtgtatgctcatagggaggtttcacatgatgaggttgaaggggaagataagattgatgctgtaatgaaggatgagggtttggaggtgaagtatttctggggtagtacattgtatcatgttgatgattagccttttaagttggagcaaatgcctaccaattacggaggctttatggagaaagtgcagggattggaggtaaggaagacacttgaggcattggatcaattgaggggattgcctgctagatgtgatgtggaacctggggagattccttcgttgattgatttggggctcaatcctactgccactcatgggtcagaatggaaaatcagctgctaatgcttcccttgtgggaggagagaatgaagcactgtacagactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="119785" stop="117491"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119485" g_stop="119153" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="334" r_length="334" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119152" i_stop="117854" i_length="1299">
            <donor d_prob="0.941" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117853" g_stop="117791" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="397" r_length="63" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E294287" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119485" e_stop="119153"/>
          <exon e_start="117853" e_stop="117791"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGGAGCTGAAGCTGTGTATGCTCATAGGGAGGTTTCACATGATGAGGTTAAAGGGGAAGATAAGATTGATGCTGTAATGAAGGATGAGGGTTTGGAGGTGAAGTATTTCTGGGGTAGTACATTGTATCATGTTGATGATTTGCCTTTTAAGTTGGAGCAAATGCCTACGAATTACGGAGGCTTTAGGGAGAAAGTGCAGGGATTGGAGGTAAGGAAGACAATTGAGGCATTGGATCAATTGAGGGGATTGCCTGCTAGAGGTGATGTGGAACCTGGGGAGATTCCTTCGTTGGTTGATTTGGGGCTCAATCCTAGTGCCAC-CATGGGTCAGGTATTACTTTGTTCGATCTCAAATATCGTAGAGGATTTAGGTTTATTCAGTATTGGATGAAAGTAGTTTTACCTTTGATGTCAAAGAACTTGTAATTTAACTGAAATGACATATTTGCGAGTGTTGGAATGAAACTGGTGTAAATGTAGTGTAACCGATAATAAGGATGATTCATATAGTTGAACCCAACAAGTTTGAGATTGAGCTACACTAGTAGTCCTTTAGTTTCACGTAGTTTTCCGTTTCTTAGACACTTCATTGGAAGTGGTAGAGATGATCAAGATTCCATTTTTATACGAATGGAAGTGATTCAAGTCAGAAATAACTGATGGTTTAATTCAACATATCTCTTGTATATGTATTCTGAACATTTGTTAGATAAAACCACATGTTTTAAGTAGGTTTAGTATTTGGCGTTTGAACATCAGTAATTTAAATGATCCTTGCTCTATCGTGTAGTGTCCTTCTATAGTTGTGTGCAGTGTTCAGGAAAGCAAGGCGAAGCAATGCGAGCCTTCTACGCTTCACAAACTAGAATGAGTATGTGAGTGCTTCATCGCCTAAAGCGTGAAGCAGGGCCTTATCACTTTTTTCCACTTCCTACTTCCCTGAACACTGGTTGTGTACACTGAGTATCCAGCTCATAGCTGTGACATTTTGTTGATCAATATGTTAATGTACTTCTTATCAGGCCGTCACCAACTAGGACACTACACACCAACTATAGTGCTCATAGAATAGACCAAAGAACTCTTATTTGTTAGCCTGAGAATATGTAATGTAGAAAGAACATCTTTTAGCCACGTTTGGAGGTTACTTTTTTAGTATTGCCTGTAGCACAGGCCACAGTGCACAATCACTTAAGAACTGTTGCTTGAATTTTGTAATTGCCTTACTGTATTGTAACTTTGGAACTGTAAGTTGTTTCACATCACAAACTAGTCAAACAAAGTTTATTTGTTTCAGTTACTTTGCAAACTATGGCAAACATGAACATTTCTTTATCTTTGCATAATCATTTGCATTTGCACATCATTTAGAATGACTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAGAGACTTCAATTTTGTAGTTGCCATACTGTATTTTTCACCGACTTGAATTTTGTAATTGCTGTACTGTATTTAAACTTTCGGAGTTGTCAGTTGTTTAACATCACAAACTAGTCAAAAAAAGTTGATTCATTTCAGTTATTTCGCTAACTATTGTAAACATGAACATTTCTTTATCTTGGTATACTTAATCATTTGCATTTGCCAACCATTTAGAATGGAAAATCAGCTGCTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAAAGACTT</genome_strand>
        <mrna_strand>GTTGGAGCTGAAGCTGTGTATGCTCATAGGGAGGTTTCACATGATGAGGTTGAAGGGGAAGATAAGATTGATGCTGTAATGAAGGATGAGGGTTTGGAGGTGAAGTATTTCTGGGGTAGTACATTGTATCATGTTGATGATTAGCCTTTTAAGTTGGAGCAAATGCCTACCAATTACGGAGGCTTTATGGAGAAAGTGCAGGGATTGGAGGTAAGGAAGACACTTGAGGCATTGGATCAATTGAGGGGATTGCCTGCTAGATGTGATGTGGAACCTGGGGAGATTCCTTCGTTGATTGATTTGGGGCTCAATCCTACTGCCACTCATGGGTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAAATCAGCTGCTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGTACAGACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E481614" ref_strand="+" ref_description="SGN-E481614 [cSTD-18-F22]">
      <seq>ctgctaaccctcttcaaaatactctaactctaaaccctcttcgtccttctgagccttctaatgctgctgggcttcgacgagcgtcgattgtttggttccgtaacgatcttcgtgttcatgataatgagtgtcttaacgcggctcataatgagtccatgtctgttttggctgtttactgtttcgacccgagagattatgggaaatcctcatctgggtttgataaaactgggccgtatagggctagttttttgattgaatctgttgctgaccttaggaagaatctacaggcaagagggtctgatcttgttgttagaattgggaagccggagactgtgttggtggaattagctaaagctgttggagctgaagctgtgtatgctcatagggaggtttcacatgatgaggttaaaggggaagataagattgatgctgtaatgaaggatgagggtttggaggtgaagtatttctggggtagtacattgtatcatgttgatgatttgccttttaagttggagcaaatgcccacaaattacggagggtttagggaaaaagtgcagggattggaggtaaggaagacaattgaggcattggatcaattgaagggattgcctgctagaggtgatgtggaaccctgggagattccttctttggttgatttggggctcaatcctagtgccacaatgggccagaatgggaaaccagctgctaatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="120141" stop="118853"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119841" g_stop="119153" g_length="689"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="689" r_length="689" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E481614" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E481614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119841" e_stop="119153"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTATTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGAAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGATTCTGTTGCTGACCTTAGGAAGAATCTACAGGCAAGAGGGTCTGATCTTGTTGTTAGAATTGGGAAGCCGGAGACTGTGTTGGTGGAATTAGCTAAAGCTGTTGGAGCTGAAGCTGTGTATGCTCATAGGGAGGTTTCACATGATGAGGTTAAAGGGGAAGATAAGATTGATGCTGTAATGAAGGATGAGGGTTTGGAGGTGAAGTATTTCTGGGGTAGTACATTGTATCATGTTGATGATTTGCCTTTTAAGTTGGAGCAAATGCCTACGAATTACGGAGGCTTTAGGGAGAAAGTGCAGGGATTGGAGGTAAGGAAGACAATTGAGGCATTGGATCAATTGAGGGGATTGCCTGCTAGAGGTGATGTGGAACCTGGGGAGATTCCTTCGTTGGTTGATTTGGGGCTCAATCCTAGTGCCACCATGGGTCAG</genome_strand>
        <mrna_strand>CTGCTAACCCTCTTCAAAATACTCTAACTCTAAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTTTTGGCTGTTTACTGTTTCGACCCGAGAGATTATGGGAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGAATCTGTTGCTGACCTTAGGAAGAATCTACAGGCAAGAGGGTCTGATCTTGTTGTTAGAATTGGGAAGCCGGAGACTGTGTTGGTGGAATTAGCTAAAGCTGTTGGAGCTGAAGCTGTGTATGCTCATAGGGAGGTTTCACATGATGAGGTTAAAGGGGAAGATAAGATTGATGCTGTAATGAAGGATGAGGGTTTGGAGGTGAAGTATTTCTGGGGTAGTACATTGTATCATGTTGATGATTTGCCTTTTAAGTTGGAGCAAATGCCCACAAATTACGGAGGGTTTAGGGAAAAAGTGCAGGGATTGGAGGTAAGGAAGACAATTGAGGCATTGGATCAATTGAAGGGATTGCCTGCTAGAGGTGATGTGGAACCCTGGGAGATTCCTTCTTTGGTTGATTTGGGGCTCAATCCTAGTGCCACAATGGGCCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E467051" ref_strand="+" ref_description="SGN-E467051 [cPRO-26-L16]">
      <seq>gtccatgtctgttttggctgtttactgtttcgacccgagagattatgggaaatcctcatctgggtttgataaaactgggccgtatagggctagttttttgattgaatctgttgctgaccttaggaagaatctacaggcaagagggtctgatcttgttgttagaattgggaagccggagactgtgttggtggaattagctaaagctgttggagctgaagctgtgtatgctcatagggaggtttcacatgatgaggttaaaggggaagataagattgatgctgtaatgaaggatgagggtttggaggtgaagtatttctggggtagtacattgtatcatgttgatgatttgccttttaagttggagcaaatgcccacaaattacggagggtttagggaaaaagtgcagggattggaggtaaggaagacaattgaggcattggatcaattgaagggattgcctgctagaggtgatgtggaacctggggagattccttctttggttgatttggggctcaatcctagtgccacaatgggccagaatggaaaaccagctgctaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="119990" stop="118853"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119690" g_stop="119153" g_length="538"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="538" r_length="538" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E467051" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E467051" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119690" e_stop="119153"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCATGTCTGTATTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGAAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGATTCTGTTGCTGACCTTAGGAAGAATCTACAGGCAAGAGGGTCTGATCTTGTTGTTAGAATTGGGAAGCCGGAGACTGTGTTGGTGGAATTAGCTAAAGCTGTTGGAGCTGAAGCTGTGTATGCTCATAGGGAGGTTTCACATGATGAGGTTAAAGGGGAAGATAAGATTGATGCTGTAATGAAGGATGAGGGTTTGGAGGTGAAGTATTTCTGGGGTAGTACATTGTATCATGTTGATGATTTGCCTTTTAAGTTGGAGCAAATGCCTACGAATTACGGAGGCTTTAGGGAGAAAGTGCAGGGATTGGAGGTAAGGAAGACAATTGAGGCATTGGATCAATTGAGGGGATTGCCTGCTAGAGGTGATGTGGAACCTGGGGAGATTCCTTCGTTGGTTGATTTGGGGCTCAATCCTAGTGCCACCATGGGTCAG</genome_strand>
        <mrna_strand>GTCCATGTCTGTTTTGGCTGTTTACTGTTTCGACCCGAGAGATTATGGGAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGAATCTGTTGCTGACCTTAGGAAGAATCTACAGGCAAGAGGGTCTGATCTTGTTGTTAGAATTGGGAAGCCGGAGACTGTGTTGGTGGAATTAGCTAAAGCTGTTGGAGCTGAAGCTGTGTATGCTCATAGGGAGGTTTCACATGATGAGGTTAAAGGGGAAGATAAGATTGATGCTGTAATGAAGGATGAGGGTTTGGAGGTGAAGTATTTCTGGGGTAGTACATTGTATCATGTTGATGATTTGCCTTTTAAGTTGGAGCAAATGCCCACAAATTACGGAGGGTTTAGGGAAAAAGTGCAGGGATTGGAGGTAAGGAAGACAATTGAGGCATTGGATCAATTGAAGGGATTGCCTGCTAGAGGTGATGTGGAACCTGGGGAGATTCCTTCTTTGGTTGATTTGGGGCTCAATCCTAGTGCCACAATGGGCCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E472520" ref_strand="+" ref_description="SGN-E472520 [cSTB-29-E3]">
      <seq>gttttttgattgaatctgttgctgaccttaggaagaatctacaggcaagagggtctgaccttgttgttagaattgggaagccggagactgtgttggtggaattagctaaagctgtaggagctgaagctgtgtatgctcatagggaggtttcacatgatgaggttaaaggggaagataagattgatgctgtaatgaaggatgagggtttggaggtgaagtatttctggggtagtacattgtatcatgttgatgatttgccttttaagttggagcaaatgccaacgaattacggagggtttagggagaaagtgcagggattggaggtaaggaagacaattgaggcattggatcaattgaggggattgcctgctagaggtgatgtggaacctggggagattccttctttggttgatttggggctcaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="119898" stop="118873"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119598" g_stop="119173" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="426" r_length="426" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E472520" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E472520" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119598" e_stop="119173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTTTGATTGATTCTGTTGCTGACCTTAGGAAGAATCTACAGGCAAGAGGGTCTGATCTTGTTGTTAGAATTGGGAAGCCGGAGACTGTGTTGGTGGAATTAGCTAAAGCTGTTGGAGCTGAAGCTGTGTATGCTCATAGGGAGGTTTCACATGATGAGGTTAAAGGGGAAGATAAGATTGATGCTGTAATGAAGGATGAGGGTTTGGAGGTGAAGTATTTCTGGGGTAGTACATTGTATCATGTTGATGATTTGCCTTTTAAGTTGGAGCAAATGCCTACGAATTACGGAGGCTTTAGGGAGAAAGTGCAGGGATTGGAGGTAAGGAAGACAATTGAGGCATTGGATCAATTGAGGGGATTGCCTGCTAGAGGTGATGTGGAACCTGGGGAGATTCCTTCGTTGGTTGATTTGGGGCTCAATC</genome_strand>
        <mrna_strand>GTTTTTTGATTGAATCTGTTGCTGACCTTAGGAAGAATCTACAGGCAAGAGGGTCTGACCTTGTTGTTAGAATTGGGAAGCCGGAGACTGTGTTGGTGGAATTAGCTAAAGCTGTAGGAGCTGAAGCTGTGTATGCTCATAGGGAGGTTTCACATGATGAGGTTAAAGGGGAAGATAAGATTGATGCTGTAATGAAGGATGAGGGTTTGGAGGTGAAGTATTTCTGGGGTAGTACATTGTATCATGTTGATGATTTGCCTTTTAAGTTGGAGCAAATGCCAACGAATTACGGAGGGTTTAGGGAGAAAGTGCAGGGATTGGAGGTAAGGAAGACAATTGAGGCATTGGATCAATTGAGGGGATTGCCTGCTAGAGGTGATGTGGAACCTGGGGAGATTCCTTCTTTGGTTGATTTGGGGCTCAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E289947" ref_strand="+" ref_description="SGN-E289947 [cLET-9-L1]">
      <seq>gttggagctgaagctgtgtatgctcatagggaggtttcacatgatgaggttaaaggggaagataagattgatgctgtaatgaaggatgagggtttggaggtgaagtatttctggggtagtacattgtatcatgttgatgatttgccttttaagttggagcaaatgcctacgaattacggaagctttagggagaaagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="119785" stop="118988"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119485" g_stop="119288" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E289947" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>198</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289947" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119485" e_stop="119288"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGGAGCTGAAGCTGTGTATGCTCATAGGGAGGTTTCACATGATGAGGTTAAAGGGGAAGATAAGATTGATGCTGTAATGAAGGATGAGGGTTTGGAGGTGAAGTATTTCTGGGGTAGTACATTGTATCATGTTGATGATTTGCCTTTTAAGTTGGAGCAAATGCCTACGAATTACGGAGGCTTTAGGGAGAAAGTG</genome_strand>
        <mrna_strand>GTTGGAGCTGAAGCTGTGTATGCTCATAGGGAGGTTTCACATGATGAGGTTAAAGGGGAAGATAAGATTGATGCTGTAATGAAGGATGAGGGTTTGGAGGTGAAGTATTTCTGGGGTAGTACATTGTATCATGTTGATGATTTGCCTTTTAAGTTGGAGCAAATGCCTACGAATTACGGAAGCTTTAGGGAGAAAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E727367" ref_strand="+" ref_description="SGN-E727367 [LA14CA04]">
      <seq>cggtcgtcgcttatcttcatcttcttcctctgattctgtacatttttctcaccggaaaactcatcagaaatggatccaaagaatcaattttccgataactcagaagcccaaacacctcaagaagaacaacagcagacacccattttaccgatagcttcaatttcacttgctttatccacaatccttccaacccatttccttaatcctcctaaaatctcaacccttttcaacaaaccaaacaaagtcaaaatcccaactcaagtttcatctcttacaaatctctcactttcagcttcttctcttccacctacaaattccaaattcaagtccactatttctgctaaccctcttcagaatactctaactcttaaccctcttcgtccttctgagccttctaatgctgctgggcttcgacgagcgtcgattgtttggttccgtaacgatcttcgtgttcatgataatgagtgtcttaacgcggctcataatgagtccatgtctgtattggctgtttactgttttgacccgagagattatggaaaatcctcatctgggtttgataaaactgggccgtatagggctagttttttgattgattctgttgctgaccttaggaagaatctacaggcaagagggtctgatcttgttgttagaattgggaagccggagactgtgttggtggaattagctaaagctgttggagctgaagctgtgtatgctcatagggaggtttcacatgatgaggttaaaggggaagataagattgatgctgtaatgaaggatgagggtttggaggtgaagtatttctggggtagtacattgtatcatgttgatgatttgcccttttaagttggagcaaatgcctacgaattacgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="120476" stop="119006"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120178" g_stop="119306" g_length="873"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="874" r_length="874" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E727367" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>873</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727367" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120178" e_stop="119306"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCCGTCGCTTATCTTCATCTTCTTCCTCTGATTCTGTACATTTTTCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGCAGACACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTATTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGAAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGATTCTGTTGCTGACCTTAGGAAGAATCTACAGGCAAGAGGGTCTGATCTTGTTGTTAGAATTGGGAAGCCGGAGACTGTGTTGGTGGAATTAGCTAAAGCTGTTGGAGCTGAAGCTGTGTATGCTCATAGGGAGGTTTCACATGATGAGGTTAAAGGGGAAGATAAGATTGATGCTGTAATGAAGGATGAGGGTTTGGAGGTGAAGTATTTCTGGGGTAGTACATTGTATCATGTTGATGATTTG-CCTTTTAAGTTGGAGCAAATGCCTACGAATTACGGA</genome_strand>
        <mrna_strand>CGGTCGTCGCTTATCTTCATCTTCTTCCTCTGATTCTGTACATTTTTCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGCAGACACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTATTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGAAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGATTCTGTTGCTGACCTTAGGAAGAATCTACAGGCAAGAGGGTCTGATCTTGTTGTTAGAATTGGGAAGCCGGAGACTGTGTTGGTGGAATTAGCTAAAGCTGTTGGAGCTGAAGCTGTGTATGCTCATAGGGAGGTTTCACATGATGAGGTTAAAGGGGAAGATAAGATTGATGCTGTAATGAAGGATGAGGGTTTGGAGGTGAAGTATTTCTGGGGTAGTACATTGTATCATGTTGATGATTTGCCCTTTTAAGTTGGAGCAAATGCCTACGAATTACGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E449110" ref_strand="+" ref_description="SGN-E449110 [cSTS-5-K6]">
      <seq>cctcaccagctttacaaacccaacaaattctttggagggcattaagccgtagcttatctccatcgtcatcttcttcttcctctgtacatttctcaccggaaaactcatcggaaatggatcccaggaatcaattttccgataacccagaaacccaaaaacctcaagaagaacaacaacaacacctacccattttaccgatagcttcaatttctcttgctttatccacaatccttccaacccatttccttaatccccctaaaatctcaacccttttcaacaaacccaacaaagtcaaaatcccaactcaagtttcatctctttcaaatctctcactttcagcttcttctcttccacctacaaaatccaatttcaagtccaccatttctgctaaccctcttcaaaacactctaactcttaaccctcttcgtccttctgaagctgtgtatgctcatagggaggtttcacatgatgaggttaaaggggaagataagattgatgctgtaatgaaggatgagggtttggaggtgaagtatttctggggtagtacattgtatcatgttgatgatttgccttttaagttggagcaaatgccaacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="120520" stop="119015"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120223" g_stop="119794" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="432" r_length="432" r_score="0.895"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119793" i_stop="119479" i_length="315">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119478" g_stop="119315" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="596" r_length="164" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E449110" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E449110" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120223" e_stop="119794"/>
          <exon e_start="119478" e_stop="119315"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACACCAACTTTAACAAAACCAACAAAATTCTTTGGAGGGTATTAAGCCGTCGCTTATCTTCATCTTCTTCCTCTGATT-CTGTACATTTTTCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGC-AGA-C-ACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTATTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGAAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGATTCTGTTGCTGACCTTAGGAAGAATCTACAGGCAAGAGGGTCTGATCTTGTTGTTAGAATTGGGAAGCCGGAGACTGTGTTGGTGGAATTAGCTAAAGCTGTTGGAGCTGAAGCTGTGTATGCTCATAGGGAGGTTTCACATGATGAGGTTAAAGGGGAAGATAAGATTGATGCTGTAATGAAGGATGAGGGTTTGGAGGTGAAGTATTTCTGGGGTAGTACATTGTATCATGTTGATGATTTGCCTTTTAAGTTGGAGCAAATGCCTACG</genome_strand>
        <mrna_strand>CCTCACCAGCTTT-ACAAACCCAAC-AAATTCTTTGGAGGGCATTAAGCCGTAGCTTATCTCCATCGTCATCTTCTTCTTCCTCTGTACATTTCTCACCGGAAAACTCATCGGAAATGGATCCCAGGAATCAATTTTCCGATAACCCAGAAACCCAAAAACCTCAAGAAGAACAACAACAACACCTACCCATTTTACCGATAGCTTCAATTTCTCTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCCCCTAAAATCTCAACCCTTTTCAACAAACCCAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTTCAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAAATCCAATTTCAAGTCCACCATTTCTGCTAACCCTCTTCAAAACACTCTAACTCTTAACCCTCTTCGTCCTT...........................................................................................................................................................................................................................................................................................................................CTGAAGCTGTGTATGCTCATAGGGAGGTTTCACATGATGAGGTTAAAGGGGAAGATAAGATTGATGCTGTAATGAAGGATGAGGGTTTGGAGGTGAAGTATTTCTGGGGTAGTACATTGTATCATGTTGATGATTTGCCTTTTAAGTTGGAGCAAATGCCAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E727565" ref_strand="+" ref_description="SGN-E727565 [LA15AC08]">
      <seq>gtcgcttatcttcatcttcttcctctgattctgtacatttttctcaccggaaaactcatcagaaatggatccaaagaatcaattttccgataactcagaagcccaaacacctcaagaagaacaacagcagacacccattttaccgatagcttcaatttcacttgctttatccacaatccttccaacccatttccttaatcctcctaaaatctcaacccttttcaacaaaccaaacaaagtcaaaatcccaactcaagtttcatctcttacaaatctctcactttcagcttcttctcttccacctacaaattccaaattcaagtccactatttctgctaaccctcttcagaatactctaactcttaaccctcttcgtccttctgagccttctaatgctgctgggcttcgacgagcgtcgattgtttggttccgtaacgatcttcgtgttcatgataatgagtgtcttaacgcggctcataatgagtccatgtctgtattggctgtttactgttttgacccgagagattatggaaaatcctcatctgggtttgataaaactgagccgtatagggctagttttttgattgattctgttgctgaccttaggaagaatctacaggcaagagggtctgatcttgttgttagaattgggaagccggagactgtgttggtggaattagctaaagctgttggagctgaagctgtgtatgctcatagggaggtttcacatgatgaggttaaaggggaagataagattgatgctgtaatgaaggatgagggtttggaggtgaagtatttctggggtagtacattgtatcatgttgatgatttgccttttaagttggagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="120473" stop="119026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120173" g_stop="119326" g_length="848"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="848" r_length="848" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E727565" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>848</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727565" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120173" e_stop="119326"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGCTTATCTTCATCTTCTTCCTCTGATTCTGTACATTTTTCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGCAGACACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTATTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGAAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGATTCTGTTGCTGACCTTAGGAAGAATCTACAGGCAAGAGGGTCTGATCTTGTTGTTAGAATTGGGAAGCCGGAGACTGTGTTGGTGGAATTAGCTAAAGCTGTTGGAGCTGAAGCTGTGTATGCTCATAGGGAGGTTTCACATGATGAGGTTAAAGGGGAAGATAAGATTGATGCTGTAATGAAGGATGAGGGTTTGGAGGTGAAGTATTTCTGGGGTAGTACATTGTATCATGTTGATGATTTGCCTTTTAAGTTGGAGC</genome_strand>
        <mrna_strand>GTCGCTTATCTTCATCTTCTTCCTCTGATTCTGTACATTTTTCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGCAGACACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTATTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGAAAATCCTCATCTGGGTTTGATAAAACTGAGCCGTATAGGGCTAGTTTTTTGATTGATTCTGTTGCTGACCTTAGGAAGAATCTACAGGCAAGAGGGTCTGATCTTGTTGTTAGAATTGGGAAGCCGGAGACTGTGTTGGTGGAATTAGCTAAAGCTGTTGGAGCTGAAGCTGTGTATGCTCATAGGGAGGTTTCACATGATGAGGTTAAAGGGGAAGATAAGATTGATGCTGTAATGAAGGATGAGGGTTTGGAGGTGAAGTATTTCTGGGGTAGTACATTGTATCATGTTGATGATTTGCCTTTTAAGTTGGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E214506" ref_strand="+" ref_description="SGN-E214506 [cLEC-77-P10]">
      <seq>tctaactcttaaccctcttcgtccttctgagccttctaatgctgctgggcttcgacgagcgtcgattgtttggttccgtaacgatcttcgtgttcatgataatgagtgtcttaacgcggctcataatgagtccatgtctgtattggctgtttactgttttgacccgagagattatggaaaatcctcatctgggtttgataaaactgggccgtatagggctagttttttgattgattctgttgctgaccttaggaagaatctacaggcaagagggtctgatcttgttgttagaattgggaagccggagactgtgttggtggaattagctaaagctgttggagctgaagctgtgtatgctcatagggaggtttcacatgatgaggttaaaggggaagataanattgatgctgtaatgaaggatgagggtttggaggtgaagtatttctggggtagtacattgtatcatggtgatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="120119" stop="119045"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119819" g_stop="119345" g_length="475"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="475" r_length="475" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E214506" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214506" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119819" e_stop="119345"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTATTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGAAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGATTCTGTTGCTGACCTTAGGAAGAATCTACAGGCAAGAGGGTCTGATCTTGTTGTTAGAATTGGGAAGCCGGAGACTGTGTTGGTGGAATTAGCTAAAGCTGTTGGAGCTGAAGCTGTGTATGCTCATAGGGAGGTTTCACATGATGAGGTTAAAGGGGAAGATAAGATTGATGCTGTAATGAAGGATGAGGGTTTGGAGGTGAAGTATTTCTGGGGTAGTACATTGTATCATGTTGATGAT</genome_strand>
        <mrna_strand>TCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTATTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGAAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGATTCTGTTGCTGACCTTAGGAAGAATCTACAGGCAAGAGGGTCTGATCTTGTTGTTAGAATTGGGAAGCCGGAGACTGTGTTGGTGGAATTAGCTAAAGCTGTTGGAGCTGAAGCTGTGTATGCTCATAGGGAGGTTTCACATGATGAGGTTAAAGGGGAAGATAANATTGATGCTGTAATGAAGGATGAGGGTTTGGAGGTGAAGTATTTCTGGGGTAGTACATTGTATCATGGTGATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E729470" ref_strand="+" ref_description="SGN-E729470 [LA21AF10]">
      <seq>gaatcccaaacacctcaagaagaacaacagcagacacccattttaccgatagcttcaatttcacttgctttatccacaatccttccaacccatttccttaatcctcctaaaatctcaacccttttcaacaaaccaaacaaagtcaaaaccccaactcaagtttcatctcttacaaatctctcactttcagcttcttctcttccacctacaaattccaaattcaagtccactatttctgctaaccctcttcagaatactctaactcttaaccctcttcgtccttctgagccttctaatgctgctgggcttcgacgagcgtcgattgtttggttccgtaacgatcttcgtgttcatgataatgagtgtcttaacgcggctcataatgagtccatgtccgtattggctgtttactgttttgacccgagagattatggaaaatcctcatctgggtttgataaaactgggccgtatagggctagttttttgattgattctgttgctgaccttacgaagaatctacaggcaagagggtctgatcttgttgttagaattgggaagccggagactgtgttggtggaattagctaaagctgttggagctgaagctgtgtatgctcatagggaggtttcacatgatgaggttaaaggggaagataagattgatgctgtaatgaacgatgaggatttggaggtgaaatatttctggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="120376" stop="119071"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120076" g_stop="119371" g_length="706"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="706" r_length="706" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E729470" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729470" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120076" e_stop="119371"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGCCCAAACACCTCAAGAAGAACAACAGCAGACACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTATTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGAAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGATTCTGTTGCTGACCTTAGGAAGAATCTACAGGCAAGAGGGTCTGATCTTGTTGTTAGAATTGGGAAGCCGGAGACTGTGTTGGTGGAATTAGCTAAAGCTGTTGGAGCTGAAGCTGTGTATGCTCATAGGGAGGTTTCACATGATGAGGTTAAAGGGGAAGATAAGATTGATGCTGTAATGAAGGATGAGGGTTTGGAGGTGAAGTATTTCTGGG</genome_strand>
        <mrna_strand>GAATCCCAAACACCTCAAGAAGAACAACAGCAGACACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAACCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCCGTATTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGAAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGATTCTGTTGCTGACCTTACGAAGAATCTACAGGCAAGAGGGTCTGATCTTGTTGTTAGAATTGGGAAGCCGGAGACTGTGTTGGTGGAATTAGCTAAAGCTGTTGGAGCTGAAGCTGTGTATGCTCATAGGGAGGTTTCACATGATGAGGTTAAAGGGGAAGATAAGATTGATGCTGTAATGAACGATGAGGATTTGGAGGTGAAATATTTCTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E590527" ref_strand="+" ref_description="SGN-E590527 [44125]">
      <seq>cttatctccatcttcatcttcttcttcctctgtacatttctcaccggaaaaactcatcggaaatggatcccaggaatcaattttctgataacccagaaacccaaaaacctcaagaagaagaacaacaacacctacccattttaccgatagcttcaatttcacttgctttatccacaatccttccaacccatttccttaatccccctaaaatctcaacccttttcaacaaacccaacaaagtcaaaatcccaactcaagtttcatctctttcaaatctctcactttcagcttcttcttttccacctacaaaatccaatttcaagtccaccatttctgctaaccctcttcaaaatactctaactctaaaccctcttcgtccttctgaaccttctaatgctgctgggcttcgacgagcttcgattgtttggttccgtaacgatcttcgtgttcatgataatgagtgtcttaacgcagctcataatgagtccatgtctgtcttggctgtttactgttttgacccgagagattatgggaaatcctcatctgggtttgataaaactgggccgtatagggctagttttttgattgaatctgttgctgaccttaggaagaatctacaggcaagagggtctgatcttgttgttagaattgggaagccggagactgtgttggtggaattaagctaaagctgtaggagctgaagctgtgtatgctcatagggaggtttcacatgatgaggttaaaggggaagataagattgatgctgtaatgaaggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="120469" stop="119098"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120169" g_stop="119398" g_length="772"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="778" r_length="778" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E590527" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>772</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E590527" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120169" e_stop="119398"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTATCTTCATCTTCTTCCTCTGATT-CTGTACATTTTTCTCACCGG-AAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGC-AGA-C-ACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTATTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGAAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGATTCTGTTGCTGACCTTAGGAAGAATCTACAGGCAAGAGGGTCTGATCTTGTTGTTAGAATTGGGAAGCCGGAGACTGTGTTGGTGGAATT-AGCTAAAGCTGTTGGAGCTGAAGCTGTGTATGCTCATAGGGAGGTTTCACATGATGAGGTTAAAGGGGAAGATAAGATTGATGCTGTAATGAAGGATG</genome_strand>
        <mrna_strand>CTTATCTCCATCTTCATCTTCTTCTTCCTCTGTACATTTCTCACCGGAAAAACTCATCGGAAATGGATCCCAGGAATCAATTTTCTGATAACCCAGAAACCCAAAAACCTCAAGAAGAAGAACAACAACACCTACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCCCCTAAAATCTCAACCCTTTTCAACAAACCCAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTTCAAATCTCTCACTTTCAGCTTCTTCTTTTCCACCTACAAAATCCAATTTCAAGTCCACCATTTCTGCTAACCCTCTTCAAAATACTCTAACTCTAAACCCTCTTCGTCCTTCTGAACCTTCTAATGCTGCTGGGCTTCGACGAGCTTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCAGCTCATAATGAGTCCATGTCTGTCTTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGGAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGAATCTGTTGCTGACCTTAGGAAGAATCTACAGGCAAGAGGGTCTGATCTTGTTGTTAGAATTGGGAAGCCGGAGACTGTGTTGGTGGAATTAAGCTAAAGCTGTAGGAGCTGAAGCTGTGTATGCTCATAGGGAGGTTTCACATGATGAGGTTAAAGGGGAAGATAAGATTGATGCTGTAATGAAGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E729968" ref_strand="+" ref_description="SGN-E729968 [LA22CF03]">
      <seq>ctttaacaaaaccaacaaaattctttggagggtgttaagccgtcgcttatcttcatcttcttcctctgattctgtacatttttctcaccggaaaactcatcagaaatggatccaaagaatcaattttccgataactcagaagcccaaacacctcaagaagaacaacagcagacacccattttaccgatagcttcaatttcacttgctttatccacaatccttccaacccatttccttaatcctcctaaaatctcaacccttttcaacaaaccaaacaaagtcaaaatcccaactcaagtttcatctcttacaaatctctcactttcagcttcttctcttccacctacaaattccaaattcaagtccactatttctgctaaccctcttcagaatactctaactcttaaccctcttcgtccttctgagccttctaatgctgctgggcttcgacgagcgtcgattgtttggttccgtaacgatcttcgtgttcatgataatgagtgtcttaacgcggctcataatgagtccatgtctgtattggctgtttactgttttgacccgagagattatggaaaatcctcatctgggtttgataaaactgggccgtatagggctagttttttgattgattctgttgctgaccttaggaagaatctacaggcaagagggtctgatcttgttgttagaattgggaagccggagactgtgttggtggaattagctaaagctgttggagctgaagctgtgtatgctcatagggaggtttcacatgatgaggttaaaggggaagataagattgatgctgtaatgaagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="120514" stop="119100"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120214" g_stop="119400" g_length="815"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="815" r_length="815" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E729968" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>815</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729968" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120214" e_stop="119400"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTAACAAAACCAACAAAATTCTTTGGAGGGTATTAAGCCGTCGCTTATCTTCATCTTCTTCCTCTGATTCTGTACATTTTTCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGCAGACACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTATTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGAAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGATTCTGTTGCTGACCTTAGGAAGAATCTACAGGCAAGAGGGTCTGATCTTGTTGTTAGAATTGGGAAGCCGGAGACTGTGTTGGTGGAATTAGCTAAAGCTGTTGGAGCTGAAGCTGTGTATGCTCATAGGGAGGTTTCACATGATGAGGTTAAAGGGGAAGATAAGATTGATGCTGTAATGAAGGA</genome_strand>
        <mrna_strand>CTTTAACAAAACCAACAAAATTCTTTGGAGGGTGTTAAGCCGTCGCTTATCTTCATCTTCTTCCTCTGATTCTGTACATTTTTCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGCAGACACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTATTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGAAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGATTCTGTTGCTGACCTTAGGAAGAATCTACAGGCAAGAGGGTCTGATCTTGTTGTTAGAATTGGGAAGCCGGAGACTGTGTTGGTGGAATTAGCTAAAGCTGTTGGAGCTGAAGCTGTGTATGCTCATAGGGAGGTTTCACATGATGAGGTTAAAGGGGAAGATAAGATTGATGCTGTAATGAAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E254133" ref_strand="+" ref_description="SGN-E254133 [cLEG-34-K1]">
      <seq>ttttcaacaaaccaaacaaagtcaaaatcccaactcaagtttcatctcttacaaatctctcactttcagcttcttctcttccacctacaaattccaaattcaagtccactatttctgctaaccctcttcagaatactctaactcttaaccctcttcgtccttctgagccttctaatgctgctgggcttcgacgagcgtcgattgtttggttccgtaacgatcttcgtgttcatgataatgagtgtcttaacgcggctcataatgagtccatgtctgtattggctgtttactgttttgacccgagagattatggaaaatcctcatctgggtttgataaaactgggccgtatagggctagttttttgattgattctgttgctgaccttaggaagaatctacaggcaagagggtctgatcttgttgttagaattgggaagccggagactgtgttggtggaattagctaaagctgttggagctgaagctgtgtatgctcatagggaggtttcacatgatgaggttaaaggggaagataagattgatgctgtaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="120255" stop="119105"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119955" g_stop="119405" g_length="551"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="551" r_length="551" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E254133" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254133" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119955" e_stop="119405"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTATTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGAAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGATTCTGTTGCTGACCTTAGGAAGAATCTACAGGCAAGAGGGTCTGATCTTGTTGTTAGAATTGGGAAGCCGGAGACTGTGTTGGTGGAATTAGCTAAAGCTGTTGGAGCTGAAGCTGTGTATGCTCATAGGGAGGTTTCACATGATGAGGTTAAAGGGGAAGATAAGATTGATGCTGTAATG</genome_strand>
        <mrna_strand>TTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTATTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGAAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGATTCTGTTGCTGACCTTAGGAAGAATCTACAGGCAAGAGGGTCTGATCTTGTTGTTAGAATTGGGAAGCCGGAGACTGTGTTGGTGGAATTAGCTAAAGCTGTTGGAGCTGAAGCTGTGTATGCTCATAGGGAGGTTTCACATGATGAGGTTAAAGGGGAAGATAAGATTGATGCTGTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E591506" ref_strand="+" ref_description="SGN-E591506 [45219]">
      <seq>acctcaccagctttaacaaacccaacaaattctttggagggcattaagccgtcgcttatctccatcttcatcttcttcttcctctgtacatttctcaccggaaaaactcatcggaaatggatcccaggaatcaattttctgataacccagaaacccaaaaacctcaagaagaagaacaacaacacctacccattttaccgatagcttcaatttcacttgctttatccacaatccttccaacccatttccttaatccccctaaaatctcaacccttttcaacaaacccaacaaagtcaaaatcccaactcaagtttcatctctttcaaatctctcactttcagcttcttcttttccacctacaaaatccaatttcaagtccaccatttctgctaaccctcttcaaaatactctaactctaaaccctcttcgtccttctgaaccttctaatgctgctgggcttcgacgagcttcgattgtttggttccgtaacgatcttcgtgttcatgataatgagtgtcttaacgcaggctcataatgagtccatgtctgtcttggctgtttactgttttgacccgagagattatgggaaatcctcatctgggtttgataaaactgggccgtatagggctagttttttgattgaatctgttgctgaccttaggaagaatctacaggcaagagggtctgatcttgttgttagaattgggaagccggagactgtgttggtggaattagctaaagctgtaggagctgaagctgtgtatgctcatagggaggtttcacatgatgaggttaaagggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="120520" stop="119128"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120224" g_stop="119428" g_length="797"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="802" r_length="802" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E591506" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>797</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E591506" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120224" e_stop="119428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGACACCAACTTTAACAAAACCAACAAAATTCTTTGGAGGGTATTAAGCCGTCGCTTATCTTCATCTTCTTCCTCTGATT-CTGTACATTTTTCTCACCGG-AAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGC-AGA-C-ACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGC-GGCTCATAATGAGTCCATGTCTGTATTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGAAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGATTCTGTTGCTGACCTTAGGAAGAATCTACAGGCAAGAGGGTCTGATCTTGTTGTTAGAATTGGGAAGCCGGAGACTGTGTTGGTGGAATTAGCTAAAGCTGTTGGAGCTGAAGCTGTGTATGCTCATAGGGAGGTTTCACATGATGAGGTTAAAGGGG</genome_strand>
        <mrna_strand>ACCTCACCAGCTTTAACAAACCCAAC-AAATTCTTTGGAGGGCATTAAGCCGTCGCTTATCTCCATCTTCATCTTCTTCTTCCTCTGTACATTTCTCACCGGAAAAACTCATCGGAAATGGATCCCAGGAATCAATTTTCTGATAACCCAGAAACCCAAAAACCTCAAGAAGAAGAACAACAACACCTACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCCCCTAAAATCTCAACCCTTTTCAACAAACCCAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTTCAAATCTCTCACTTTCAGCTTCTTCTTTTCCACCTACAAAATCCAATTTCAAGTCCACCATTTCTGCTAACCCTCTTCAAAATACTCTAACTCTAAACCCTCTTCGTCCTTCTGAACCTTCTAATGCTGCTGGGCTTCGACGAGCTTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCAGGCTCATAATGAGTCCATGTCTGTCTTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGGAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGAATCTGTTGCTGACCTTAGGAAGAATCTACAGGCAAGAGGGTCTGATCTTGTTGTTAGAATTGGGAAGCCGGAGACTGTGTTGGTGGAATTAGCTAAAGCTGTAGGAGCTGAAGCTGTGTATGCTCATAGGGAGGTTTCACATGATGAGGTTAAAGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E484533" ref_strand="+" ref_description="SGN-E484533 [cSTE-13-P23]">
      <seq>ctcatcggaaatggatcccaggaatcaattttccgataacccagaaacccaaaaacctcaagaagaagaacaacaacacctacccattttaccgatagcttcaatttctcttgctttatccacaatccttccaacccatttccttaatccccctaaaatctcaacccttttcaacaaacccaacaaagtcaaaatcccaactcaagtttcatctctttcaaatctctcactttcagcttcttctcttccacctacaaaatccaatttcaagtccaccatttctgctaaccctcttcaaaacactctaactcttaaccctcttcgtccttctgagccttctaatgctgctgggcttcgacgagcgtcgattgtttggttccgtaacgatcttcgtgttcatgataatgagtgtcttaacgcggctcataatgagtccatgtctgttttggctgtttactgttttgacccgagagattatgggaaatcctcatctgggtttgataaaactgggccgtatagggctagttatgtgattgaatctgttgctgaccttaggaagaatctacaggcaagagggtctgaccttgttgttagaattgggaagccggagactgtgttggtggaattagctaaagctgtaggagctgaagctgtgtatgctcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="120419" stop="119158"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120119" g_stop="119458" g_length="662"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="665" r_length="665" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E484533" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E484533" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120119" e_stop="119458"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGC-AGA-C-ACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTATTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGAAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGATTCTGTTGCTGACCTTAGGAAGAATCTACAGGCAAGAGGGTCTGATCTTGTTGTTAGAATTGGGAAGCCGGAGACTGTGTTGGTGGAATTAGCTAAAGCTGTTGGAGCTGAAGCTGTGTATGCTCATA</genome_strand>
        <mrna_strand>CTCATCGGAAATGGATCCCAGGAATCAATTTTCCGATAACCCAGAAACCCAAAAACCTCAAGAAGAAGAACAACAACACCTACCCATTTTACCGATAGCTTCAATTTCTCTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCCCCTAAAATCTCAACCCTTTTCAACAAACCCAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTTCAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAAATCCAATTTCAAGTCCACCATTTCTGCTAACCCTCTTCAAAACACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTTTTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGGAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTATGTGATTGAATCTGTTGCTGACCTTAGGAAGAATCTACAGGCAAGAGGGTCTGACCTTGTTGTTAGAATTGGGAAGCCGGAGACTGTGTTGGTGGAATTAGCTAAAGCTGTAGGAGCTGAAGCTGTGTATGCTCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E729343" ref_strand="+" ref_description="SGN-E729343 [LA20DB01]">
      <seq>gccgtcgcttatcttcatcttacttcctctgattctgtacatttttctcaccggaaaactcatcagaaatggatccaaagaatcaattttgccgataactcagaagcccaaacacctcaagaagaacaacagcagacacccattttaccgatagcttcaatttcacttgctttatccacaatccttccaacccatttccttaatcctcctaaaatctcaacccttttcaacaaaccaaacaaagtcaaaatcccaactcaagtttcatctcttacaaatctctcactttcagcttcttctcttccacctacaaattccaaattcaagtccactatttctgctaaccctcttcagaatactctaactcttaaccctcttcgtccttctgagccttctaatgctgctgggcttcgacgagcgtcgattgtttggttccgtaacgatcttcgtgttcatgataatgagtgtcttaacgcggctcataatgagtccatgtctgtattggctgtttactgttttgacccgagagattatggaaaatcctcatctgggtttgataaaactgggccgtatagggctagttttttgattgattctgttgctgaccttaggaagaatctacaggcaagagggtctgatcttgttgttagaattgggaagccggagactgtgttggtggaattagctaaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="120476" stop="119186"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120176" g_stop="119486" g_length="691"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="693" r_length="693" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E729343" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729343" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120176" e_stop="119486"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGTCGCTTATCTTCATCTT-CTTCCTCTGATTCTGTACATTTTTCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTT-CCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGCAGACACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTATTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGAAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGATTCTGTTGCTGACCTTAGGAAGAATCTACAGGCAAGAGGGTCTGATCTTGTTGTTAGAATTGGGAAGCCGGAGACTGTGTTGGTGGAATTAGCTAAAGCT</genome_strand>
        <mrna_strand>GCCGTCGCTTATCTTCATCTTACTTCCTCTGATTCTGTACATTTTTCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTTGCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGCAGACACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTATTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGAAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGATTCTGTTGCTGACCTTAGGAAGAATCTACAGGCAAGAGGGTCTGATCTTGTTGTTAGAATTGGGAAGCCGGAGACTGTGTTGGTGGAATTAGCTAAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E453762" ref_strand="+" ref_description="SGN-E453762 [cSTS-21-E19]">
      <seq>caccagctttaacaaaccaacaaattctttggagggcattaagccgtcgcttatcttcatcttcttcttcatctgtacatttctcaccggaaaactcatcggaaatggatcccaggaatcaattttctgataacccagaaacccaaaaacctcaagaagaagaacaacaacaacacctacccattttaccgatagcttcaatttcacttgctttatccacaatccttccaacccatttccttaatccccctaaaatatcaacccttttcaacaaacccaacaaagtcaaaatcccaactcaagtttcatctctttcaaatctctcactttcagcttcttcttttccacctacaaaatccaatttcaagtccaccatttctgctaaccctcttcaaaatactctaactctaaaccctcttcgtccttctgagccttctaatgctgctgggcttcgacgagcgtcgattgtttggttccgtaacgatcttcgtgttcatgataatgagtgtcttaacgcggctcataatgagtccatgtctgttttggctgtttactgtttcgacccgagagattatgggaaatcctcatctgggtttgataaaactgggccgtatagggctagttttttgattgaatctgttgctgaccttaggaagaatctcaggcaagagggtctgatcttgttgttagaattgggaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="120520" stop="119218"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120220" g_stop="119518" g_length="703"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="701" r_length="701" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E453762" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E453762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120220" e_stop="119518"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCAACTTTAACAAAACCAACAAAATTCTTTGGAGGGTATTAAGCCGTCGCTTATCTTCATCTTCTTCCTCTGATTCTGTACATTTTTCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTC---AAGAAGAACAACAGC-AGA-C-ACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTATTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGAAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGATTCTGTTGCTGACCTTAGGAAGAATCTACAGGCAAGAGGGTCTGATCTTGTTGTTAGAATTGGGAAGC</genome_strand>
        <mrna_strand>CACCAGCTTTAAC-AAACCAAC-AAATTCTTTGGAGGGCATTAAGCCGTCGCTTATCTTCATCTTCTT-CT-TCA-TCTGTACA--TTTCTCACCGGAAAACTCATCGGAAATGGATCCCAGGAATCAATTTTCTGATAACCCAGAAACCCAAAAACCTCAAGAAGAAGAACAACAACAACACCTACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCCCCTAAAATATCAACCCTTTTCAACAAACCCAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTTCAAATCTCTCACTTTCAGCTTCTTCTTTTCCACCTACAAAATCCAATTTCAAGTCCACCATTTCTGCTAACCCTCTTCAAAATACTCTAACTCTAAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTTTTGGCTGTTTACTGTTTCGACCCGAGAGATTATGGGAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGAATCTGTTGCTGACCTTAGGAAGAATCT-CAGGCAAGAGGGTCTGATCTTGTTGTTAGAATTGGGAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E467865" ref_strand="+" ref_description="SGN-E467865 [cSTB-1-P8]">
      <seq>cgcttatcttcatcttcttcttcatctgtacatttctcaccggaaaactcatcggaaatggatcccaggaatcaattttctgataacccagaaacccaaaaacctcaagaagaagaacaacaacaacacctacccattttaccgatagcttcaatttcacttgctttatccacaatccttccaacccatttccttaatccccctaaaatatcaacccttttcaacaaacccaacaaagtcaaaatcccaactcaagtttcatctctttcaaatctctcactttcagcttcttcttttccacctacaaaatccaatttcaagtccaccatttctgctaaccctcttcaaaatactctaactctaaaccctcttcgtccttctgagccttctaatgctgctgggcttcgacgagcgtcgattgtttggttccgtaacgatcttcgtgttcatgataatgagtgtcttaacgcggctcataatgagtccatgtctgttttggctgtttactgtttcgacccgagagattatgggaaatcctcatctgggtttgataaaactgggccgtatagggctagttttttgattgaatctgttgctgaccttaggaagaatctacaggcaagagggtctgatcttgttgttaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="120464" stop="119228"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120171" g_stop="119528" g_length="644"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="645" r_length="645" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E467865" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E467865" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120171" e_stop="119528"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCTTATCTTCATCTTCTTCCTCTGATTCTGTACATTTTTCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTC-A-A-GAAGAACAACAGC-AGA-C-ACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTATTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGAAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGATTCTGTTGCTGACCTTAGGAAGAATCTACAGGCAAGAGGGTCTGATCTTGTTGTTAGA</genome_strand>
        <mrna_strand>CGCTTATCTTCATCTTCTT-CT-TCA-TCTGTACAT--TTCTCACCGGAAAACTCATCGGAAATGGATCCCAGGAATCAATTTTCTGATAACCCAGAAACCCAAAAACCTCAAGAAGAAGAACAACAACAACACCTACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCCCCTAAAATATCAACCCTTTTCAACAAACCCAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTTCAAATCTCTCACTTTCAGCTTCTTCTTTTCCACCTACAAAATCCAATTTCAAGTCCACCATTTCTGCTAACCCTCTTCAAAATACTCTAACTCTAAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTTTTGGCTGTTTACTGTTTCGACCCGAGAGATTATGGGAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGAATCTGTTGCTGACCTTAGGAAGAATCTACAGGCAAGAGGGTCTGATCTTGTTGTTAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E415113" ref_strand="+" ref_description="SGN-E415113 [STM-20-D20]">
      <seq>ttcttcctctgtacatttctcaccggaaaactcatcggaaatggatcccaggaatcaattttccgataacccagaaacccaaaaacctcaagaagaacaacaacaacacctacccattttaccgatagcttcaatttctcttgctttatccacaatccttccaacccatttccttaatccccctaaaatctcaacccttttcaacaaacccaacaaagtcaaaatcccaactcaagtttcatctctttcaaatctctcactttcagcttcttctcttccacctacaaaatccaatttcaagtccaccatttctgctaaccctcttcaaaacactctaactcttaaccctcttcgtccttctgagccttctaatgctgctgggcttcgacgagcgtcgattgtttggttccgtaacgatcttcgtgttcatgataatgagtgtcttaacgcggctcataatgagtccatgtctgttttggctgtttactgttttgacccgagagattatgggaaatcctcatctgggtttggataaactgggccgtatagggctagttttttgattgaatctgttgctgaccttaggaagaatctacaggcaagagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="120445" stop="119247"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120151" g_stop="119547" g_length="605"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="606" r_length="606" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E415113" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E415113" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120151" e_stop="119547"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTGATTCTGTACATTTTTCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGC-AGA-C-ACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTATTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGAAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGATTCTGTTGCTGACCTTAGGAAGAATCTACAGGCAAGAGG</genome_strand>
        <mrna_strand>TTCTTCCTCTGTACA--TTTCTCACCGGAAAACTCATCGGAAATGGATCCCAGGAATCAATTTTCCGATAACCCAGAAACCCAAAAACCTCAAGAAGAACAACAACAACACCTACCCATTTTACCGATAGCTTCAATTTCTCTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCCCCTAAAATCTCAACCCTTTTCAACAAACCCAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTTCAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAAATCCAATTTCAAGTCCACCATTTCTGCTAACCCTCTTCAAAACACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTTTTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGGAAATCCTCATCTGGGTTTGGATAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGAATCTGTTGCTGACCTTAGGAAGAATCTACAGGCAAGAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E467554" ref_strand="+" ref_description="SGN-E467554 [cSTB-49-G18]">
      <seq>attctttggagggcattaagccgtagcttatctccatcgtcatcttcttcttcctctgtacatttctcaccggaaaactcatcggaaatggatcccaggaatcaattttccgataacccagaaacccaaaaacctcaagaagaacaacaacaacacctacccattttaccgatagcttcaatttctcttgctttatccacaatccttccaacccatttccttaatccccctaaaatctcaacccttttcaacaaacccaacaaagtcaaaatcccaactcaagtttcatctctttcaaatctctcactttcagcttcttctcttccacctacaaaatccaatttcaagtccaccatttctgctaaccctcttcaaaacactctaactcttaaccctcttcgtccttctgagccttctaatgctgctgggcttcgacgagcgtcgattgtttggttccgtaacgatcttcgtgttcatgataatgagtgtcttaacgcggctcataatgagtccatgtctgttttggctgtttactgttttgacccgagagattatgggaaatcctcatctgggtttgataaaactgggccgtatagggctagttttttgattgaatctgttgctgaccttangaagaatctacaggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="120495" stop="119252"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120195" g_stop="119552" g_length="644"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="648" r_length="648" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E467554" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E467554" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120195" e_stop="119552"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTTTGGAGGGTATTAAGCCGTCGCTTATCTTCATCTTCTTCCTCTGATT-CTGTACATTTTTCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGC-AGA-C-ACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTATTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGAAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGATTCTGTTGCTGACCTTAGGAAGAATCTACAGGCA</genome_strand>
        <mrna_strand>ATTCTTTGGAGGGCATTAAGCCGTAGCTTATCTCCATCGTCATCTTCTTCTTCCTCTGTACATTTCTCACCGGAAAACTCATCGGAAATGGATCCCAGGAATCAATTTTCCGATAACCCAGAAACCCAAAAACCTCAAGAAGAACAACAACAACACCTACCCATTTTACCGATAGCTTCAATTTCTCTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCCCCTAAAATCTCAACCCTTTTCAACAAACCCAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTTCAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAAATCCAATTTCAAGTCCACCATTTCTGCTAACCCTCTTCAAAACACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTTTTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGGAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGAATCTGTTGCTGACCTTANGAAGAATCTACAGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E306807" ref_strand="+" ref_description="SGN-E306807 [cLEY-11-C16]">
      <seq>ttatcttcatcttcttcctctgattctgtacatttttctcaccggaaaactcatcagaaatggatccaaagaatcaattttccgataactcagaagcccaaacacctcaagaagaacaacagcagacacccattttaccgatagcttcaatttcacttgctttatccacaatccttccaacccatttccttaatcctcctaaaatctcaacccttttcaacaaaccaaacaaagtcaaaatcccaactcaagtttcatctcttacaaatctctcactttcagcttcttctcttccacctacaaattccaaattcaagtccactatttctgctaaccctcttcagaatactctaactcttaaccctcttcgtccttctgagccttctaatgctgctgggcttcgacgagcgtcgattgtttggttccgtaacgatcttcgtgttcatgataatgagtgtcttaacgcggctcataatgagtccatgtctgtattggctgtttactgttttgacccgagagattatggaaaatcctcatctgggtttgataaaactgggccgtatagggctagttttttgattgattctgttgctgaccttaggaagaatctaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="120468" stop="119256"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120168" g_stop="119556" g_length="613"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="613" r_length="613" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E306807" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306807" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120168" e_stop="119556"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATCTTCATCTTCTTCCTCTGATTCTGTACATTTTTCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGCAGACACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTATTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGAAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGATTCTGTTGCTGACCTTAGGAAGAATCTACA</genome_strand>
        <mrna_strand>TTATCTTCATCTTCTTCCTCTGATTCTGTACATTTTTCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGCAGACACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTATTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGAAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGATTCTGTTGCTGACCTTAGGAAGAATCTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E730931" ref_strand="+" ref_description="SGN-E730931 [LA25CF03]">
      <seq>ccctttaaataaccataaaaattctttggagggtgttaagccctcgcttatcttcatcttcttcctctgattctggacatttttctcaccggaaaactcatcagaaatggatccaaacaatcaattttccgataactcacaagcccaaacgcctcaagaagaacaacagcagacaccgattttaccgatagcttcaatttcacttgcttttccaccatccttccaccccatttccttaatcctcctaaaatctcaccccttttcaacaaagcaaacaaagtcgaaatcacaactcaagtttcatctcttacaaatctctcactttcatcttcttctcttccacctacgaattccgaattcaagtccactatttctgctaaccctcttcaaaatactctctctcttaaccctcttcgaccctccgagccttctaatgctgctgggcttcgacgagcgtctattgattcgttccataacgatccccctgttcatgataatgagtgtcttaacgcggctcataatgagtccatgtctgtattggctgtgaactgttttgacccgagagattatggaaaatcctcatctgggtttgatacaactgggccggataaggctagttttttgattgattctgttgctgaccttaagaaaaatctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="120514" stop="119257"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120216" g_stop="119557" g_length="660"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E730931" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120216" e_stop="119557"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTTAACAAAACCAACAAAATTCTTTGGAGGGTATTAAGCCGTCGCTTATCTTCATCTTCTTCCTCTGATTCTGTACATTTTTCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGCAGACACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTATTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGAAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGATTCTGTTGCTGACCTTAGGAAGAATCTAC</genome_strand>
        <mrna_strand>CCCTTTAA-ATAACCATAAAAATTCTTTGGAGGGTGTTAAGCCCTCGCTTATCTTCATCTTCTTCCTCTGATTCTGGACATTTTTCTCACCGGAAAACTCATCAGAAATGGATCCAAACAATCAATTTTCCGATAACTCACAAGCCCAAACGCCTCAAGAAGAACAACAGCAGACACCGATTTTACCGATAGCTTCAATTTCACTTGCTTT-TCCACCATCCTTCCACCCCATTTCCTTAATCCTCCTAAAATCTCACCCCTTTTCAACAAAGCAAACAAAGTCGAAATCACAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCATCTTCTTCTCTTCCACCTACGAATTCCGAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAAAATACTCTCTCTCTTAACCCTCTTCGACCCTCCGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCTATTGATTCGTTCCATAACGATCCCCCTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTATTGGCTGTGAACTGTTTTGACCCGAGAGATTATGGAAAATCCTCATCTGGGTTTGATACAACTGGGCCGGATAAGGCTAGTTTTTTGATTGATTCTGTTGCTGACCTTAAGAAAAATCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272873" ref_strand="+" ref_description="SGN-E272873 [cLEM-25-D3]">
      <seq>ccgtcgcttatcttcatcttcttcctctgattctgtacattactctcaccggggaactcatcagaaatggatccaaagaatcaattttccgataactcagaagcccaaacacctcaagaagaacaacagctgacacccattttaccgatagcttcaatttcacttgctttatccacaatccttccaacccatttccttaatcctcctaaaatctcaacccttttcaacaaaccaaacaaagtcaaaatcccaactcaagtttcatctcttacaaatctctcactttcagcttcttctcttccacctacaaattccaaattcaagtccactatttctgctaaccctcttcagaatactctaactcttaaccctcttcgtccttctgagccttctaatgctgctgggcttcgacgagcgtcgattgtttggttccgtaacgatcttcgtgttcatgataatgagtgtcttaacgcggctcataatgagtccatgtctgtattggctgtttactgttttgacccgagagattatggaaaatcctcatctgggtttgataaaactgggccgtatagggctagttttttgattgattctgttgctgacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="120475" stop="119272"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120175" g_stop="119572" g_length="604"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="604" r_length="604" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E272873" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272873" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120175" e_stop="119572"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTCGCTTATCTTCATCTTCTTCCTCTGATTCTGTACATTTTTCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGCAGACACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTATTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGAAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGATTCTGTTGCTGACC</genome_strand>
        <mrna_strand>CCGTCGCTTATCTTCATCTTCTTCCTCTGATTCTGTACATTACTCTCACCGGGGAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGCTGACACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTATTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGAAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGATTCTGTTGCTGACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E475143" ref_strand="+" ref_description="SGN-E475143 [cSTB-39-I24]">
      <seq>ttcttcctctgtacatttctcaccggaaaactcatcggaaatggatcccaggaatcaattttccgataacccagaaacccaaaaacctcaagaagaacaacaacaacacctacccattttaccgatagcttcaatttctcttgctttatccacaatccttccaacccatttccttaatccccctaaaatctcaacccttttcaacaaacccaacaaagtcaaaatcccaactcaagtttcatctctttcaaatctctcactttcagcttcttctcttccacctacaaaatccaatttcaagtccaccatttctgctaaccctcttcaaaacactctaactcttaaccctcttcgtccttctgagccttctaatgctgctgggcttcgacgagcgtcgattgtttggttccgtaacgatcttcgtgttcatgataatgagtgtcttaacgcggctcataatgagtccatgtctgttttggctgtttactgttttgacccgagagattatgggaaatcctcatctgggtttgataaaactgggccgtatagggctagttttttgattgaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="120445" stop="119282"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120151" g_stop="119582" g_length="570"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="571" r_length="571" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E475143" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E475143" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120151" e_stop="119582"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTGATTCTGTACATTTTTCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGC-AGA-C-ACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTATTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGAAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGATTCT</genome_strand>
        <mrna_strand>TTCTTCCTCTGTACA--TTTCTCACCGGAAAACTCATCGGAAATGGATCCCAGGAATCAATTTTCCGATAACCCAGAAACCCAAAAACCTCAAGAAGAACAACAACAACACCTACCCATTTTACCGATAGCTTCAATTTCTCTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCCCCTAAAATCTCAACCCTTTTCAACAAACCCAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTTCAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAAATCCAATTTCAAGTCCACCATTTCTGCTAACCCTCTTCAAAACACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTTTTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGGAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E438361" ref_strand="+" ref_description="SGN-E438361 [cSTA-7-H5]">
      <seq>tctcaccggaaaactcatcggaaatggatcccaggaatcaattttgtgataacccagaaacccaaaaacctcaagaagaagaacaacaacaacacctacccattttaccgatagcttcaatttcacttgctttatccacaatccttccaacccatttccttaatccccctaaaatatcaacccttttcaacaaacccaacaaagtcaaaatcccaactcaagtttcatgtctttcaaatctctcactttcagcttcttcttttccacctacaaaatccaatttcaagtccaccatttctgctaaccctcttcaaaatactctaactctaaaccctcttcgtccttctgagccttctaatgctgctgggcttcgacgagcgtcgattgtttggttccgcaacgatcttcgtgttcatgataatgagtgtcttaacgcggctcataatgagtccatgtctgctgtggctgtgtactgtttcgacccgagagattatgggaaatcctcatctgggtttgataaaactgggccgtata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="120432" stop="119305"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120132" g_stop="119605" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="534" r_length="534" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E438361" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E438361" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120132" e_stop="119605"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTC---AAGAAGAACAACAGC-AGA-C-ACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTATTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGAAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATA</genome_strand>
        <mrna_strand>TCTCACCGGAAAACTCATCGGAAATGGATCCCAGGAATCAATTTTGTGATAACCCAGAAACCCAAAAACCTCAAGAAGAAGAACAACAACAACACCTACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCCCCTAAAATATCAACCCTTTTCAACAAACCCAACAAAGTCAAAATCCCAACTCAAGTTTCATGTCTTTCAAATCTCTCACTTTCAGCTTCTTCTTTTCCACCTACAAAATCCAATTTCAAGTCCACCATTTCTGCTAACCCTCTTCAAAATACTCTAACTCTAAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGCAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGCTGTGGCTGTGTACTGTTTCGACCCGAGAGATTATGGGAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E338462" ref_strand="+" ref_description="SGN-E338462 [cTOE-15-D11]">
      <seq>gagggtcgcttatcttcatcttcttcctctgattctgtccatttttctcaccggaaaactcatcagaaatggatccaaagaatcaattttccgataactcagaagcccaaacacctcaagaagaacaacagcagacaccccattttaccgatagcttcaatttcacttgctttatccacaatccttccaacccatttccttaatcctcctaaaatctcaacccttttcaacaaaccaaacaaagtcaaaatcccaactcaagtttcatctcttacaaatctctcactttcagcttcttctcttccacctaccaaattccaaattcaagtccactatttctgctaaccctcttcagaatactctaactcttaaccctcttcgtccttctgagccttctaatgctgctgggcttcgacgagcgtcgattgtttggttccgtaacgatcttcgtgttcatgataatgagtgtcttaacgcggctcataatgagtccatgtctgtattggctgtttactgttttgacccgagagattatggaaaatcctcatctgggtttgataaaactgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="120473" stop="119313"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120178" g_stop="119613" g_length="566"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="567" r_length="567" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E338462" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338462" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120178" e_stop="119613"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCCGTCGCTTATCTTCATCTTCTTCCTCTGATTCTGTACATTTTTCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGCAGACA-CCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTA-CAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTATTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGAAAATCCTCATCTGGGTTTGATAAAACTGG</genome_strand>
        <mrna_strand>GAG-GGTCGCTTATCTTCATCTTCTTCCTCTGATTCTGTCCATTTTTCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGCAGACACCCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACCAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTATTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGAAAATCCTCATCTGGGTTTGATAAAACTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E312351" ref_strand="+" ref_description="SGN-E312351 [cTOA-5-D13]">
      <seq>gtcgcttatcttcatcttcttcctctgattctgtacatttttctcaccggaaaactcatcagaaatggatccaaagaatcaattttccgataactcagaagcccaaacacctcaagaagaacaacagcagacacccattttaccgatagcttcaatttcacttgctttatccacaatccttccaacccatttccttaatcctcctaaaatctcaacccttttcaacaaaccaaacaaagtcaaaatcccaactcaagtttcatctcttacaaatctctcactttcagcttcttctcttccacctacaaattccaaattcaagtccactatttctgctaaccctcttcagaatactctaactcttaaccctcttcgtccttctgagccttctaatgctgctgggcttcgacgagcgtcgattgtttggttccgtaacgatcttcgtgttcatgataatgagtgtcttaacgcggctcataatgagtccatgtctgtattggctgtttactgttttgacccgagagattatggaaaatcctcatctgggtttgataaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="120473" stop="119315"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120173" g_stop="119615" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E312351" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312351" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120173" e_stop="119615"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGCTTATCTTCATCTTCTTCCTCTGATTCTGTACATTTTTCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGCAGACACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTATTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGAAAATCCTCATCTGGGTTTGATAAAACT</genome_strand>
        <mrna_strand>GTCGCTTATCTTCATCTTCTTCCTCTGATTCTGTACATTTTTCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGCAGACACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTATTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGAAAATCCTCATCTGGGTTTGATAAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E253410" ref_strand="+" ref_description="SGN-E253410 [cLEG-24-M16]">
      <seq>accaacaaaattctttggagggtattaagccgtcgcttatcttcatcttcttcctctgattctgtacatttttctcaccggaaaactcatcagaaatggatccaaagaatcaattttccgataactcagaagcccaaacacctcaagaagaacaacagcagacacccattttaccgatagcttcaatttcacttgctttatccacaatccttccaacccatttccttaatcctcctaaaatctcaacccttttcaacaaaccaaacaaagtcaaaatcccaactcaagtttcatctcttacaaatctctcactttcagcttcttctcttccacctacaaattccaaattcaagtccactatttctgctaaccctcttcagaatactctaactcttaaccctcttcgtccttctgagccttctaatgctgctgggcttcgacgagcgtcgattgtttggttccgtaacgatcttcgtgttcatgataatgagtgtcttaacgcggctcataatgagtccatgtctgtattggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="120504" stop="119372"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120204" g_stop="119672" g_length="533"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E253410" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E253410" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120204" e_stop="119672"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAACAAAATTCTTTGGAGGGTATTAAGCCGTCGCTTATCTTCATCTTCTTCCTCTGATTCTGTACATTTTTCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGCAGACACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTATTGGCT</genome_strand>
        <mrna_strand>ACCAACAAAATTCTTTGGAGGGTATTAAGCCGTCGCTTATCTTCATCTTCTTCCTCTGATTCTGTACATTTTTCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGCAGACACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTATTGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E367260" ref_strand="+" ref_description="SGN-E367260 [cLPT-5-B15]">
      <seq>tcgcttatcttcatcttcttcctctgattctgtacatttctcaccggaaaactcatcagaaatggatccaaagaatcaattttccgataactcagaagcccaaacacctcaagaagaacaacagcagacacccatcttaccgatagcttcaatttcacttgctttatccacaatccttccaacccatttccttaatcctcctaaaatctcaacccttttcaacaaaccaaacaaagtcaaaatcccgactcaagtttcatctcttacaaatctctcactttcagcttcttctcttccacctacgaattccaaattcaagtccactatttctgctaaccctcttcaaaatactctaactcttaaccctcttcgtccttctgagccttctaatgctgctgggcttcgacgagcgtcgattgtttggttccgtaacgatcttcgtgttcatgataatgagtgtcttaacgcggctcataatgagtccatgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="120472" stop="119381"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120172" g_stop="119681" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="490" r_length="490" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E367260" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367260" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120172" e_stop="119681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCTTATCTTCATCTTCTTCCTCTGATTCTGTACATTTTTCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGCAGACACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCT</genome_strand>
        <mrna_strand>TCGCTTATCTTCATCTTCTTCCTCTGATTCTGTACA--TTTCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGCAGACACCCATCTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCGACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACGAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAAAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E324017" ref_strand="+" ref_description="SGN-E324017 [cTOC-3-P23]">
      <seq>aagccgtcgcttatgcttcatcttcttgctctgattctgtacatttttctcaccggaaaactcatcagaaatggatccaaagaatcaattttccgataactcagaagcccaaacacctcaagaagaacaacagcagacacccattttaccgatagcttcaatttcacttgctttatccacaatccttccaacccatttccttaatcctcctaaaatctcaacccttttcaacaaaccaaacaaagtcaaaatcccaactcaagtttcatctcttacaaatctctcactttcagcttcttctcttccacctacaaattccaaattcaagtccactatttctgctaaccctcttcagaatactctaactcttaaccctcttcgtccttctgagccttctaatgctgctgggcttcgacgagcgtcgattgtttggttccgtaacgatcttcgtgttcatgataatgagtgtcttaacgcggctcataatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="120478" stop="119391"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120178" g_stop="119691" g_length="488"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="489" r_length="489" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E324017" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324017" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120178" e_stop="119691"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCCGTCGCTTAT-CTTCATCTTCTTCCTCTGATTCTGTACATTTTTCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGCAGACACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGA</genome_strand>
        <mrna_strand>AAGCCGTCGCTTATGCTTCATCTTCTTGCTCTGATTCTGTACATTTTTCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGCAGACACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E437462" ref_strand="+" ref_description="SGN-E437462 [cSTA-3-J8]">
      <seq>cctctgtacatttctcaccggaaaactcatcggaaatggatcccaggaatcaattttccgataacccagaaacccaaaaacctcaagaagaagaacaacaacacctacccattttaccgatagcttcaatttctcttgctttatccacaatccttccaacccatttccttaatccccctaaaatctcaacccttttcaacaaacccaacaaagtcaaaatcccaactcaagtttcatctctttcaaatctctcactttcagcttcttctcttccacctacaaaatccaatttcaagtccaccatttctgctaaccctcttcaaaacactctaactcttaaccctcttcgtccttctgagccttctaatgctgctgggcttcgacgagcgtcgattgtttggttccgtaacgatcttcgtgttcatgataatgagtgtcttaacgcggctcataatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="120443" stop="119391"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120146" g_stop="119691" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="457" r_length="457" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E437462" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E437462" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120146" e_stop="119691"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTGTACATTTTTCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGC-AGA-C-ACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGA</genome_strand>
        <mrna_strand>CCTCTGTACA--TTTCTCACCGGAAAACTCATCGGAAATGGATCCCAGGAATCAATTTTCCGATAACCCAGAAACCCAAAAACCTCAAGAAGAAGAACAACAACACCTACCCATTTTACCGATAGCTTCAATTTCTCTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCCCCTAAAATCTCAACCCTTTTCAACAAACCCAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTTCAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAAATCCAATTTCAAGTCCACCATTTCTGCTAACCCTCTTCAAAACACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392372" ref_strand="+" ref_description="SGN-E392372 [TUS-35-J14]">
      <seq>aatttttcgacgctcgtcgaagcccagcagcattagaaggctcagaaggacgaagagggttaagagttagagtattctgaagagggttagcagaaatagtggacttgaatttggaatttgtaggtggaagagaagaagctgaaagtgagagatttgtaagagatgaaacttgagttgggattttgactttgtttggtttgttgaaaagggttgagattttaggaggattgaggaagtgggttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="+" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="119455" stop="120293"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119749" g_stop="119993" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="245" r_length="245" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="+" ref_id="SGN-E392372" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>245</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392372" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119749" e_stop="119993"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAATCGACGCTCGTCGAAGCCCAGCAGCATTAGAAGGCTCAGAAGGACGAAGAGGGTTAAGAGTTAGAGTATTCTGAAGAGGGTTAGCAGAAATAGTGGACTTGAATTTGGAATTTGTAGGTGGAAGAGAAGAAGCTGAAAGTGAGAGATTTGTAAGAGATGAAACTTGAGTTGGGATTTTGACTTTGTTTGGTTTGTTGAAAAGGGTTGAGATTTTAGGAGGATTAAGGAAATGGGTTGGA</genome_strand>
        <mrna_strand>AATTTTTCGACGCTCGTCGAAGCCCAGCAGCATTAGAAGGCTCAGAAGGACGAAGAGGGTTAAGAGTTAGAGTATTCTGAAGAGGGTTAGCAGAAATAGTGGACTTGAATTTGGAATTTGTAGGTGGAAGAGAAGAAGCTGAAAGTGAGAGATTTGTAAGAGATGAAACTTGAGTTGGGATTTTGACTTTGTTTGGTTTGTTGAAAAGGGTTGAGATTTTAGGAGGATTGAGGAAGTGGGTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E201782" ref_strand="+" ref_description="SGN-E201782 [cLEC-11-F9]">
      <seq>aacaatcgacgctcgtcgaagcccagcagcattagaaggctcagaaggacgaagagggttaagagttagagtattctgaagagggttagcagaaatagtggacttgaatttggaatttgtaggtggaagagaagaagctgaaagtgagagatttgtaagagatgaaacttgagttgggattttgactttgtttggtttgttgaaaagggttgagattttaggaggattaaggaaatgggttggaaggattgtggataaagcaagtgaaattgaagctatcggtaaaatgggtgtctgctgttgttcttcttgaggtgtttgggcttctgagttatcggaaaattgattctttggatccatttctgatgagttttccggtgagaaaaatgtacagaatcagaggaagaagatgaagataagcgacggcttaataccctccaaagaattttgttggttttgttaaagttggtgtcaatataataatactatgtttatttttttgcctattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="+" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="119450" stop="120558"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119750" g_stop="120258" g_length="509"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="509" r_length="509" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="+" ref_id="SGN-E201782" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201782" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119750" e_stop="120258"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATCGACGCTCGTCGAAGCCCAGCAGCATTAGAAGGCTCAGAAGGACGAAGAGGGTTAAGAGTTAGAGTATTCTGAAGAGGGTTAGCAGAAATAGTGGACTTGAATTTGGAATTTGTAGGTGGAAGAGAAGAAGCTGAAAGTGAGAGATTTGTAAGAGATGAAACTTGAGTTGGGATTTTGACTTTGTTTGGTTTGTTGAAAAGGGTTGAGATTTTAGGAGGATTAAGGAAATGGGTTGGAAGGATTGTGGATAAAGCAAGTGAAATTGAAGCTATCGGTAAAATGGGTGTCTGCTGTTGTTCTTCTTGAGGTGTTTGGGCTTCTGAGTTATCGGAAAATTGATTCTTTGGATCCATTTCTGATGAGTTTTCCGGTGAGAAAAATGTACAGAATCAGAGGAAGAAGATGAAGATAAGCGACGGCTTAATACCCTCCAAAGAATTTTGTTGGTTTTGTTAAAGTTGGTGTCAATATAATAATACTATGTTTATTTTTTTGCCTATTT</genome_strand>
        <mrna_strand>AACAATCGACGCTCGTCGAAGCCCAGCAGCATTAGAAGGCTCAGAAGGACGAAGAGGGTTAAGAGTTAGAGTATTCTGAAGAGGGTTAGCAGAAATAGTGGACTTGAATTTGGAATTTGTAGGTGGAAGAGAAGAAGCTGAAAGTGAGAGATTTGTAAGAGATGAAACTTGAGTTGGGATTTTGACTTTGTTTGGTTTGTTGAAAAGGGTTGAGATTTTAGGAGGATTAAGGAAATGGGTTGGAAGGATTGTGGATAAAGCAAGTGAAATTGAAGCTATCGGTAAAATGGGTGTCTGCTGTTGTTCTTCTTGAGGTGTTTGGGCTTCTGAGTTATCGGAAAATTGATTCTTTGGATCCATTTCTGATGAGTTTTCCGGTGAGAAAAATGTACAGAATCAGAGGAAGAAGATGAAGATAAGCGACGGCTTAATACCCTCCAAAGAATTTTGTTGGTTTTGTTAAAGTTGGTGTCAATATAATAATACTATGTTTATTTTTTTGCCTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E445724" ref_strand="+" ref_description="SGN-E445724 [cSTA-18-G16]">
      <seq>aaacccaacaaattctttggagggcattaagccgtagcttatctccatcgtcatcttcttcttcctctgtacatttctcaccggaaaactcatcggaaatggatcccaggaatcaattttccgataacccagaaacccaaaaacctcaagaagaacaacaacaacacctacccattttaccgatagcttcaatttctcttgctttatccacaatccttccaacccatttccttaatccccctaaaatctcaacccttttcaacaaacccaacaaagtcaaaatcccaactcaagtttcatctctttcaaatctctcactttcagcttcttctcttccacctacaaaatccaatttcaagtccaccatttctgctaaccctcttcaaaacactctaactcttaaccctcttcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="120507" stop="119499"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120207" g_stop="119799" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="412" r_length="412" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E445724" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E445724" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120207" e_stop="119799"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACCAACAAAATTCTTTGGAGGGTATTAAGCCGTCGCTTATCTTCATCTTCTTCCTCTGATT-CTGTACATTTTTCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGC-AGA-C-ACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCG</genome_strand>
        <mrna_strand>AAACCCAAC-AAATTCTTTGGAGGGCATTAAGCCGTAGCTTATCTCCATCGTCATCTTCTTCTTCCTCTGTACATTTCTCACCGGAAAACTCATCGGAAATGGATCCCAGGAATCAATTTTCCGATAACCCAGAAACCCAAAAACCTCAAGAAGAACAACAACAACACCTACCCATTTTACCGATAGCTTCAATTTCTCTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCCCCTAAAATCTCAACCCTTTTCAACAAACCCAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTTCAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAAATCCAATTTCAAGTCCACCATTTCTGCTAACCCTCTTCAAAACACTCTAACTCTTAACCCTCTTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E283968" ref_strand="+" ref_description="SGN-E283968 [cLER-13-P5]">
      <seq>acaaaaccaacaaaattctttggagggtattaagccgtcgcttatcttcatcttcttcctctgattctgtacatttttctcaccggaaaactcatcagaaatggatccaaagaatcaattttccgataactcagaagcccaaacacctcaagaagaacaacagcagacacccattttaccgatagcttcaatttcacttgctttatccacaatccttccaacccatttccttaatcctcctaaaatctcaacccttttcaacaaaccaaacaaagtcaaaatcccaactcaagtttcatctcttacaaatctctcactttcagcttcttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="120509" stop="119578"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120209" g_stop="119878" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="332" r_length="332" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E283968" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>332</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283968" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120209" e_stop="119878"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAACCAACAAAATTCTTTGGAGGGTATTAAGCCGTCGCTTATCTTCATCTTCTTCCTCTGATTCTGTACATTTTTCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGCAGACACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTC</genome_strand>
        <mrna_strand>ACAAAACCAACAAAATTCTTTGGAGGGTATTAAGCCGTCGCTTATCTTCATCTTCTTCCTCTGATTCTGTACATTTTTCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGCAGACACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392622" ref_strand="+" ref_description="SGN-E392622 [TUS-35-J14](-)">
      <seq>aaaaaaaagattctttggatccatttctgatgagttttccggtgagaaaaatgtacagaatcagaggaagaagatgaagataagcgacggcttaataccctccaaagaattttgttggttttgttaaagttggtgtcaatataataatactatgtttatttttttgcctatttgttgtgttaggtgggtgaggtgtttatagaggttggtagaggtggatgtatcaatttaagagtggataaatttttgtacgagtcaatttatttgtctgattttgaatcgatatgaaatttaaaaaagtcaacataactatctaaaatagagagattatttttgaaaagaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="+" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="119788" stop="120721"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120086" g_stop="120422" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="338" r_length="338" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="339" polyA_stop="357"/>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="+" ref_id="SGN-E392622" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>337</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392622" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120086" e_stop="120422"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAATTGATTCTTTGGATCCATTTCTGATGAGTTTTCCGGTGAGAAAAATGTACAGAATCAGAGGAAGAAGATGAAGATAAGCGACGGCTTAATACCCTCCAAAGAATTTTGTTGGTTTTGTTAAAGTTGGTGTCAATATAATAATACTATGTTTATTTTTTTGCCTATTTGTTGTGTTAGGTGGGTGAGGTGTTTATAGAGGTTGGTAGAGGTGGATGTATCAATTTAAGAGTGGATAAATTTTTGTACGAGTCAATTTATTTGTCTGATTTTGAATCGATATGAAATTTAAGAAAATCAA-ATAACTATCTAAAATAGAGAGATTATTTTTGAT</genome_strand>
        <mrna_strand>AAAAAAAAGATTCTTTGGATCCATTTCTGATGAGTTTTCCGGTGAGAAAAATGTACAGAATCAGAGGAAGAAGATGAAGATAAGCGACGGCTTAATACCCTCCAAAGAATTTTGTTGGTTTTGTTAAAGTTGGTGTCAATATAATAATACTATGTTTATTTTTTTGCCTATTTGTTGTGTTAGGTGGGTGAGGTGTTTATAGAGGTTGGTAGAGGTGGATGTATCAATTTAAGAGTGGATAAATTTTTGTACGAGTCAATTTATTTGTCTGATTTTGAATCGATATGAAATTTAAAAAAGTCAACATAACTATCTAAAATAGAGAGATTATTTTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E592993" ref_strand="+" ref_description="SGN-E592993 [36213]">
      <seq>cttttgagactcaacttcaattccttctttgaggcaactgcaagaggggtgctcaatgttgtcaaccctcgcccatccgtatctgttctgcagtgacaatttcttcttcttaaagcctcccaatgtaattttgctgtaagcattgctttgtctgctagttttttccttctttttcctgtgtgcgcgtgtgctgttacatgcctttgtaagtcgacaagtttagaattgacgtatagttgattgactatttaaacgattgatgtaagcagtaagagcatctgctacctttccttgcaatttcagctggtgccatcttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="122678" stop="121674"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122378" g_stop="122346" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122345" i_stop="122267" i_length="79">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="122266" g_stop="121987" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="306" r_length="273" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="317" polyA_stop="326"/>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E592993" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>313</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E592993" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122378" e_stop="122346"/>
          <exon e_start="122266" e_stop="121987"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTGAGACTCAACTTCAATTCCTTCTTTGAGGTAAATCTCTTCTGCAGTTACATGGAAAACATCATATTTCATTTGCTTATGTTATTTATATTACTTTATTCATCAACAGGCAACTGCAAGAGGGGTGCTCAACGTTGTCAACCCTCGCCCATCCGTATCTGTTCTGCAGTGACAATTTCTTCTTCTTAAAGCCACCCAATCTAATTTTTCTGTAAGCCTTCCTTTGTCTGCTAGTTTTTTCCTTCTTTTCCCTGTGTGCGCATGTGTTTTTACATGCCTCTGTAAGTCGTCACATTTAGAATTGACGTATAGTTGATTGATTATATAAACGATTGCTGTAGCCTGTAAGCAGTAAGAACGTCTGCTACCTTTCCTTGCAATTTCAGCTG</genome_strand>
        <mrna_strand>CTTTTGAGACTCAACTTCAATTCCTTCTTTGAG...............................................................................GCAACTGCAAGAGGGGTGCTCAATGTTGTCAACCCTCGCCCATCCGTATCTGTTCTGCAGTGACAATTTCTTCTTCTTAAAGCCTCCCAATGTAATTTTGCTGTAAGCATTGCTTTGTCTGCTAGTTTTTTCCTTCTTTTTCCTGTGTGCGCGTGTGCTGTTACATGCCTTTGTAAGTCGACAAGTTTAGAATTGACGTATAGTTGATTGACTATTTAAACGA-T--TG-A---TGTAAGCAGTAAGAGCATCTGCTACCTTTCCTTGCAATTTCAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E605059" ref_strand="+" ref_description="SGN-E605059 [57080]">
      <seq>gaaatcttcaattctatattcaggtggatgtgatagaatctcagtggaacgttttgcaatctcatattcagaattctcaggatttcacggaacttgtgggctttcatcaagagtacttggctgcgctaatttcacaatctttcttggacatcggttctgtctcaagaattctggatggaataatgaaactatgcttgcagttctgttggaagatcgaaaatgacgaaagcaatagaactactagtgaactggagcacatagctgaggagttcaacaaaaaatcaaactccctatacactatactccgaagtagcaggcttgctgggagccagagagctccgttccttagacaatttcttttgagactcaacttcaattccttctttgaggcaactgcaagaggggtgctcaatgttgtcaaccctcgcccatccgtatctgttctgcagtgacaatttcttcttcttaaagcctcccaatgtaattttgctgtaagcattgctttgtctgctagttttttccttgctttttcctgtgtgcgcgtgtgctgttacatgcctttgtaagtcgacagagttagaattgacgtatagttgattgactatttaaacgattgatgtaagcagtaagagcatctgctaccttttccttgcaaagccaatgtcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="125098" stop="121734"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124798" g_stop="124776" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="124775" i_stop="124179" i_length="597">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.882" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="124178" g_stop="124090" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="112" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="124089" i_stop="123200" i_length="890">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="123199" g_stop="123046" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="266" r_length="154" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="123045" i_stop="122469" i_length="577">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="122468" g_stop="122346" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="389" r_length="123" r_score="0.976"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="122345" i_stop="122267" i_length="79">
            <donor d_prob="0.978" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="122266" g_stop="122027" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="630" r_length="241" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-E605059" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E605059" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124798" e_stop="124776"/>
          <exon e_start="124178" e_stop="124090"/>
          <exon e_start="123199" e_stop="123046"/>
          <exon e_start="122468" e_stop="122346"/>
          <exon e_start="122266" e_stop="122027"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATCTTCAATTCTATATTCAGGTAATTTCCTGTAAGATATATGTGAGCATTCTGTCAGTTATTATTGCTTAATAGACGGTCCAACTTTATTTAATCTAATGCTTGTTATGTGTAATAGATTTAATGCTAAAAGGCACTTTGGAATTTCGATGATCACATGAATATATGAGCTTTGATATATTAAACTAATCAGGCAGTTAGCTTCTTTCATGTTCTTCAGCAGAAAATAGACTTTTGAAGTGCACAACTGGGCTTATTTTCATGGACCTGCATAGAGTTGAATATTGGAACTCTGTACTTTCACATGGGCTGTCTTATAGTGAATAATTATGATACCTTATAGCTTGCAAAAGCATATCTGAGGTTTTTAGTTCCTATATATGATATAAATGTCACAATTTGACATTTTTCAACATCATCTGAAAAAATTTTACTAATGCGTATAAAAGAACATGTCATAGTCCATCACCACTAGTGTTGTGATCCTATTTCTTAATCAGTAGTTGACGAAACATTCACAGAAGGGTCTCTGTTAGACAACCTTGAAAGTCTTGTTTCTTCATTGCCTTCCACGATAATGACTATGCAAAAACCTAGTTAACAAGTTTTATTTCCCAGGTGGATGTGATAGAATCTCAGTGGAACGTTTTGCAATCTCACATTCAGAATTCTCATGATTTCACGGAACTTGTGGGCTTTCATCAAGAGTAAGTAATTGAACATTTCAATGTGTATTATGCTGCCAGTAACTATTGAATAGTGATCGCAACCGCTGCTATTAGTGCCTTTTGGAATTTGAAATTTGTGTTATCTATCGAATGTTCTTCCCGAGTTCATACACTTTGCCTTATGCTTCTTATATTTTTGTCTTCCATTTAGGTGTATATTGCCAAATATTATCACTGTAATTAGTTGTTGAAACATGAACCTACTTTGATATCATATTGTAGAATTGGAGCTAATGGAATGTTGTTAATCATTATGAATCTGCACCCAAGGGTGTGGCCTATTGGACAATGAATTGGGTTGAGAACCATAAGGTCTCACATTAATATCCCAGTATGGACAAAAACGCTAGGTATTTTCTTTCTATCTCCCAGCCTTGGTGAACAGAGTTACGCTACCTATTATTGGTGGGAAGTGGCAGGTATCCAGTAGAATTAGTGGAGATGCATGCAAGCTGACCTGGACACTACTGTTATAAAAAGTTCTATGAATCTAAGTTGTAGACTTCTTGTTTACTGTTTCATCTGCGGGACATTCTATCTCAAATATAGGTTCTATCTGTTTTGAACTATTTTTTGCAATGTGACGACTGTTGCATAACCACTGTCGTAACCTTTTCACACTAAAGTAACTAACATAAGCAAAAAAAAGTTCTGCCTAATAAGTTAGAAGCGTATCATGATTTTTTGTCTTCCAGAGTTCATACACTTTGAGTTTTGCACCTTAAGTTCTCATCTTATTAACTTCTAGTAGTTTTTTCAGTAACCCTTATTTTTAACAGAAACAAGATTACTATATAGTTGCTACTCATTTTTTGTGATTGTTGTGTGTTGTTTGATATAAAAGTTGATGGACATTGGCTGTTTTTCAGATACTTGGCTGCGCTAATTTCACAATCTTTCTTGGACATCGGTTCTGTCTCAAGAATTCTGGATGGAATCATGAAACTATGCTTGCAGTTCTGTTGGAAGATCGAAAATGACGAAAGCAATAGAACTACTAGTGAACTGGAGCACATAGCTGAGGTACTATTGAGTTGATTTATGCTTCTGGTGGTTTCATTTTCTAATGATAGCCAAGAATAACATGTTCAGATAAGATTGATGGCTGGTCCATTCAAATTCATCACTAAGAAGCAAGAACTTTCCATACACAAATTGGTCAAAACAGTTCGCTCTTTGTAGTTTGTTCACTACCTCTGACATTCTTCATCTAAATACACTCTTAAATAGAAGCCAATCAAGCCCCAGAGCGTCTTTTGGTTGATGTCTTGATCAATGTCTTAGTCGCCTGTGTCAGTATCTAACTTCTAACACTTGATTAACCCCCAACTCATCTGACTAATGAGTGCTGACAAAGATGTGATGGCAGCTTATTTTACTCATCAAAATTACTTCACGACGTAAAAATTAGACTCCTGCACTAGATTATCAGTGGCTTTTGTTGTTGAAGAATTTATTACTTGCTAATGATGAAATCTTATATTCGGTACTTGAGTTTGATCTTTTTTTCTCTATGGTCGTCAATCTGTGTTTTGAATTATTTCTTGTATTTATTGACTGGTTCCTGATGTAATACCTCATATTTTTTATGACTTCTCAGGAGTTCAACAAAAAATCAAACTCCCTATACACGATACTTCGAAGTAGCAGGCTTGCTGGGAGCCAGAGAGCTCCATTCCTTAGACAATTTCTTTTGAGACTCAACTTCAATTCCTTCTTTGAGGTAAATCTCTTCTGCAGTTACATGGAAAACATCATATTTCATTTGCTTATGTTATTTATATTACTTTATTCATCAACAGGCAACTGCAAGAGGGGTGCTCAACGTTGTCAACCCTCGCCCATCCGTATCTGTTCTGCAGTGACAATTTCTTCTTCTTAAAGCCACCCAATCTAATTTTTCTGTAAGCCTTCCTTTGTCTGCTAGTTTTTTCCTT-CTTTTCCCTGTGTGCGCATGTGTTTTTACATGCCTCTGTAAGTCGTCACATTTAGAATTGACGTATAGTTGATTGATTATATAAACGATTGCTGTAGCCTGTAAG</genome_strand>
        <mrna_strand>GAAATCTTCAATTCTATATTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATGTGATAGAATCTCAGTGGAACGTTTTGCAATCTCATATTCAGAATTCTCAGGATTTCACGGAACTTGTGGGCTTTCATCAAGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTTGGCTGCGCTAATTTCACAATCTTTCTTGGACATCGGTTCTGTCTCAAGAATTCTGGATGGAATAATGAAACTATGCTTGCAGTTCTGTTGGAAGATCGAAAATGACGAAAGCAATAGAACTACTAGTGAACTGGAGCACATAGCTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTCAACAAAAAATCAAACTCCCTATACACTATACTCCGAAGTAGCAGGCTTGCTGGGAGCCAGAGAGCTCCGTTCCTTAGACAATTTCTTTTGAGACTCAACTTCAATTCCTTCTTTGAG...............................................................................GCAACTGCAAGAGGGGTGCTCAATGTTGTCAACCCTCGCCCATCCGTATCTGTTCTGCAGTGACAATTTCTTCTTCTTAAAGCCTCCCAATGTAATTTTGCTGTAAGCATTGCTTTGTCTGCTAGTTTTTTCCTTGCTTTTTCCTGTGTGCGCGTGTGCTGTTACATGCCTTTGTAAGTCGACAGAGTTAGAATTGACGTATAGTTGATTGACTATTTAAACGATTGATGTAAGCAGTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>255</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="2985" PGL_stop="1178"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2985" e_stop="2538"/>
            <exon e_start="1612" e_stop="1368"/>
            <exon e_start="1288" e_stop="1178"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.979" acc_prob="0.511" e_score="0.998"/>
          <exon-intron don_prob="0.995" acc_prob="0.977" e_score="1.000"/>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="2985" e_stop="2538" e_length="448"/>
          </exon>
          <intron i_serial="1" don_prob="0.979" acc_prob="0.511">
            <gDNA_intron_boundary i_start="2537" i_stop="1613" i_length="925"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="1612" e_stop="1368" e_length="245"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.977">
            <gDNA_intron_boundary i_start="1367" i_stop="1289" i_length="79"/>
          </intron>
          <exon e_serial="3" e_score="0.982">
            <gDNA_exon_boundary e_start="1288" e_stop="1178" e_length="111"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2985" stop="2570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301383" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2976" stop="2538"/>
              <exon start="1612" stop="1368"/>
              <exon start="1288" stop="1178"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543494" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2974" stop="2538"/>
              <exon start="1612" stop="1468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304930" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGTGAATTTCTCTGATTTTTTTTTTTCAAATTAATTAATTTGTGATCATCACAATTGTCATGTGTAAGTGATTCCGCCATTAAAGGATACAGATATAGTCAGTGTTTCCGCCATTAAAGTAGATAAACAGTGAGGAAAAACAAACGGAGATTTTTCAGTATTTTTTTTTTCACTATTAAGTGCTCGCAGTTTGTTTGTTTGTTTTTTGGGAAAATTCTCAGATTTGGAACAATTTTTTGAATTTTGGAAATGAAGTTTTGTAAGAAATATGAGGAGTATATGGAAGGGCAATGCCGGAATAAGAAGTTGCCGCGGGTAGGTTTGAAGAAATTGAAGAAAATTTTGAAGAGATGTCGAAAATGTCATCAATCACGAAGTGTTGTTGGTCTGTCTGGAGATAACAATATTGTTCATGATAGCTCCAGTTGCTCGCAGCATCAATGCTCTG : TTTGTGATGGAAGTTTTTTTCCATCTCTCCTTAAGGAGATGTCTGAAGTGGTTGGCAGCTTCAATAAACGTGCGCAGAAATTGCTTGAACTGCATCTCTCATCAGGTTTCCGCAAATATCTTATCTTGCTCAAAGAAAAAATTCAAGGAAACCATATTGCTTTAGTTCAAGAAGGAAAAGATCTAGTCACCTATGCTATAATCAACGCAATTGCCGTGCGTAAAATACTTAAGAAATATGACAAG : ATTCACTATTCTAAGCAAGGCCAGGCATTCAAGTCACAAGCTCAAAGTATGCACATTGAGATCCTTCAGTCCCCCTGGCTGTGTGAACTTATGGCTTTTCACATCAATTTG</gDNA_template>
            <first_frame> R  E  F  L  *  F  F  F  F  K  L  I  N  L  *  S  S  Q  L  S  C  V  S  D  S  A  I  K  G  Y  R  Y  S  Q  C  F  R  H  *  S  R  *  T  V  R  K  N  K  R  R  F  F  S  I  F  F  F  T  I  K  C  S  Q  F  V  C  L  F  F  G  K  I  L  R  F  G  T  I  F  *  I  L  E  M  K  F  C  K  K  Y  E  E  Y  M  E  G  Q  C  R  N  K  K  L  P  R  V  G  L  K  K  L  K  K  I  L  K  R  C  R  K  C  H  Q  S  R  S  V  V  G  L  S  G  D  N  N  I  V  H  D  S  S  S  C  S  Q  H  Q  C  S   : V  C  D  G  S  F  F  P  S  L  L  K  E  M  S  E  V  V  G  S  F  N  K  R  A  Q  K  L  L  E  L  H  L  S  S  G  F  R  K  Y  L  I  L  L  K  E  K  I  Q  G  N  H  I  A  L  V  Q  E  G  K  D  L  V  T  Y  A  I  I  N  A  I  A  V  R  K  I  L  K  K  Y  D  K  :  I  H  Y  S  K  Q  G  Q  A  F  K  S  Q  A  Q  S  M  H  I  E  I  L  Q  S  P  W  L  C  E  L  M  A  F  H  I  N  L </first_frame>
            <second_frame>  V  N  F  S  D  F  F  F  S  N  *  L  I  C  D  H  H  N  C  H  V  *  V  I  P  P  L  K  D  T  D  I  V  S  V  S  A  I  K  V  D  K  Q  *  G  K  T  N  G  D  F  S  V  F  F  F  S  L  L  S  A  R  S  L  F  V  C  F  L  G  K  F  S  D  L  E  Q  F  F  E  F  W  K  *  S  F  V  R  N  M  R  S  I  W  K  G  N  A  G  I  R  S  C  R  G  *  V  *  R  N  *  R  K  F  *  R  D  V  E  N  V  I  N  H  E  V  L  L  V  C  L  E  I  T  I  L  F  M  I  A  P  V  A  R  S  I  N  A  L  :  F  V  M  E  V  F  F  H  L  S  L  R  R  C  L  K  W  L  A  A  S  I  N  V  R  R  N  C  L  N  C  I  S  H  Q  V  S  A  N  I  L  S  C  S  K  K  K  F  K  E  T  I  L  L  *  F  K  K  E  K  I  *  S  P  M  L  *  S  T  Q  L  P  C  V  K  Y  L  R  N  M  T  R :   F  T  I  L  S  K  A  R  H  S  S  H  K  L  K  V  C  T  L  R  S  F  S  P  P  G  C  V  N  L  W  L  F  T  S  I   </second_frame>
            <third_frame>   *  I  S  L  I  F  F  F  Q  I  N  *  F  V  I  I  T  I  V  M  C  K  *  F  R  H  *  R  I  Q  I  *  S  V  F  P  P  L  K  *  I  N  S  E  E  K  Q  T  E  I  F  Q  Y  F  F  F  H  Y  *  V  L  A  V  C  L  F  V  F  W  E  N  S  Q  I  W  N  N  F  L  N  F  G  N  E  V  L  *  E  I  *  G  V  Y  G  R  A  M  P  E  *  E  V  A  A  G  R  F  E  E  I  E  E  N  F  E  E  M  S  K  M  S  S  I  T  K  C  C  W  S  V  W  R  *  Q  Y  C  S  *  *  L  Q  L  L  A  A  S  M  L  C :   L  *  W  K  F  F  S  I  S  P  *  G  D  V  *  S  G  W  Q  L  Q  *  T  C  A  E  I  A  *  T  A  S  L  I  R  F  P  Q  I  S  Y  L  A  Q  R  K  N  S  R  K  P  Y  C  F  S  S  R  R  K  R  S  S  H  L  C  Y  N  Q  R  N  C  R  A  *  N  T  *  E  I  *  Q   : D  S  L  F  *  A  R  P  G  I  Q  V  T  S  S  K  Y  A  H  *  D  P  S  V  P  L  A  V  *  T  Y  G  F  S  H  Q  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0038L16.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2745" stop="2538"/>
                    <exon start="1612" stop="1368"/>
                    <exon start="1288" stop="1178"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>564</number_coding_nucleotides>
                  <number_encoded_amino_acids>188</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILEMKFCKKYEEYMEGQCRNKKLPRVGLKKLKKILKRCRKCHQSRSVVGLSGDNNIVHDSSSCSQHQCSVCDGSFFPSLLKEMSEVVGSFNKRAQKLLELHLSSGFRKYLILLKEKIQGNHIALVQEGKDLVTYAIINAIAVRKILKKYDKIHYSKQGQAFKSQAQSMHIEILQSPWLCELMAFHINL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="39745" PGL_stop="40470"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39745" e_stop="40470"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.953"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.953">
            <gDNA_exon_boundary e_start="39745" e_stop="40470" e_length="726"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39745" stop="40229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367110" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40170" stop="40470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245978" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCACCCACAATACACCCGCAACCACCACCCACACTAACAACCAACCCGAACCACCCCCATACCCACAACATCTCCAGCCCGATCCGTTTTGGGTCCTTCCCGGCCACCCGAATAACCACCGCCCGTGCCACCCCCCAATACTCATCCCATGTTAACCCGTGTCAAAGCCGGTATCTTTAAATCCAAAACCTTTCAGGCTACCATACTACCAAATACACCCCTTCCCGATAGTGAACCAACAACCTACTCTGTTGCCTCAAAAAATGCTTATTGGCGTCATGCTATGGATGACGAGTTTAAGGCTTTTACTGATTAGAAAACTTGGGTTCTTGTACCTAAGCCCCATGGGCGGCACCCAGTGGGCTGTAAATGGGTCTACAAAATTAAACACAATGCAAATGGCAGTATTTCCAGGTACAAGGCTCGTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGGCTTGATTACTCTGAGACATTCAGTCCTGTTATTCGGCAGGAAACCATTCGCCTGGTACTGTCACTCGTTGTGCGCAACAATTGGCTCATCAATCAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGCTTGATGAAACTATCTACATGACGCAACCACCGGGCTATGTTGATCCCCGCTTCCCTAAACATGTTTGTAAACTCCAGAAGTCTCTGTATGGGCTCAAGCAAGCCCCCCGTGCTTGGTACACACGTCTTAAAATGTT</gDNA_template>
            <first_frame> S  P  T  I  H  P  Q  P  P  P  T  L  T  T  N  P  N  H  P  H  T  H  N  I  S  S  P  I  R  F  G  S  F  P  A  T  R  I  T  T  A  R  A  T  P  Q  Y  S  S  H  V  N  P  C  Q  S  R  Y  L  *  I  Q  N  L  S  G  Y  H  T  T  K  Y  T  P  S  R  *  *  T  N  N  L  L  C  C  L  K  K  C  L  L  A  S  C  Y  G  *  R  V  *  G  F  Y  *  L  E  N  L  G  S  C  T  *  A  P  W  A  A  P  S  G  L  *  M  G  L  Q  N  *  T  Q  C  K  W  Q  Y  F  Q  V  Q  G  S  F  G  C  *  R  L  Q  S  G  V  W  A  *  L  L  *  D  I  Q  S  C  Y  S  A  G  N  H  S  P  G  T  V  T  R  C  A  Q  Q  L  A  H  Q  S  V  G  C  F  Q  C  F  S  S  W  H  A  *  *  N  Y  L  H  D  A  T  T  G  L  C  *  S  P  L  P  *  T  C  L  *  T  P  E  V  S  V  W  A  Q  A  S  P  P  C  L  V  H  T  S  *  N  V </first_frame>
            <second_frame>  H  P  Q  Y  T  R  N  H  H  P  H  *  Q  P  T  R  T  T  P  I  P  T  T  S  P  A  R  S  V  L  G  P  S  R  P  P  E  *  P  P  P  V  P  P  P  N  T  H  P  M  L  T  R  V  K  A  G  I  F  K  S  K  T  F  Q  A  T  I  L  P  N  T  P  L  P  D  S  E  P  T  T  Y  S  V  A  S  K  N  A  Y  W  R  H  A  M  D  D  E  F  K  A  F  T  D  *  K  T  W  V  L  V  P  K  P  H  G  R  H  P  V  G  C  K  W  V  Y  K  I  K  H  N  A  N  G  S  I  S  R  Y  K  A  R  L  V  A  K  G  Y  N  Q  E  Y  G  L  D  Y  S  E  T  F  S  P  V  I  R  Q  E  T  I  R  L  V  L  S  L  V  V  R  N  N  W  L  I  N  Q  L  D  V  S  N  A  F  L  H  G  M  L  D  E  T  I  Y  M  T  Q  P  P  G  Y  V  D  P  R  F  P  K  H  V  C  K  L  Q  K  S  L  Y  G  L  K  Q  A  P  R  A  W  Y  T  R  L  K  M   </second_frame>
            <third_frame>   T  H  N  T  P  A  T  T  T  H  T  N  N  Q  P  E  P  P  P  Y  P  Q  H  L  Q  P  D  P  F  W  V  L  P  G  H  P  N  N  H  R  P  C  H  P  P  I  L  I  P  C  *  P  V  S  K  P  V  S  L  N  P  K  P  F  R  L  P  Y  Y  Q  I  H  P  F  P  I  V  N  Q  Q  P  T  L  L  P  Q  K  M  L  I  G  V  M  L  W  M  T  S  L  R  L  L  L  I  R  K  L  G  F  L  Y  L  S  P  M  G  G  T  Q  W  A  V  N  G  S  T  K  L  N  T  M  Q  M  A  V  F  P  G  T  R  L  V  W  L  L  K  A  T  I  R  S  M  G  L  I  T  L  R  H  S  V  L  L  F  G  R  K  P  F  A  W  Y  C  H  S  L  C  A  T  I  G  S  S  I  S  W  M  F  P  M  L  F  F  M  A  C  L  M  K  L  S  T  *  R  N  H  R  A  M  L  I  P  A  S  L  N  M  F  V  N  S  R  S  L  C  M  G  S  S  K  P  P  V  L  G  T  H  V  L  K  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0038L16.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39900" stop="40355"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>453</number_coding_nucleotides>
                  <number_encoded_amino_acids>151</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PVSKPVSLNPKPFRLPYYQIHPFPIVNQQPTLLPQKMLIGVMLWMTSLRLLLIRKLGFLYLSPMGGTQWAVNGSTKLNTMQMAVFPGTRLVWLLKATIRSMGLITLRHSVLLFGRKPFAWYCHSLCATIGSSISWMFPMLFFMACLMKLST*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0038L16.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40061" stop="40468"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>408</number_coding_nucleotides>
                  <number_encoded_amino_acids>136</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KTWVLVPKPHGRHPVGCKWVYKIKHNANGSISRYKARLVAKGYNQEYGLDYSETFSPVIRQETIRLVLSLVVRNNWLINQLDVSNAFLHGMLDETIYMTQPPGYVDPRFPKHVCKLQKSLYGLKQAPRAWYTRLKM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="45187" PGL_stop="45904"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45187" e_stop="45904"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="45187" e_stop="45904" e_length="718"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45187" stop="45904"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355237" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45187" stop="45890"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349120" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45187" stop="45798"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352014" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATTTGAATCCATAAAGAAATGATCCAATTAATCCCGATACAAAATGAGAATCGTATGGATGCGATTTTGCATTTCTCGACAAATAAAATGTAGTTTGGTGTTTTAAGCGGGTAATCAATTTTGGGTAAGGAAAAACGTGTCATTCTTACTTAACTCTTGGTTTAGGAATTCCTTATATAACTTAAATGACACAGCAAAAGCGATAAAATACAACCTCAAAATCACACATAGACTACTCGTAAATAATAATTTTAAGAAACATAGTAGAACATGAATTGTTGTATATTGCTATTTTCTTCATGTAGGAGGACACAATATTCCAATAAAATAATGAAATCGTAAGAAAGTACATCAACATATTTAAAAAGGAAATATATAATACTTAGGAAGGAAAGAAAGAAGCGGATAAAAAGAAAAAGAAAATTACTGCACATACAAAATGATCAGCAAAGTTCATTCATTTTTGCATGATAATCTCTCATCGAGTCTTGTCATTTCCATGAAGATCATGCTAGGCAATTTATAGAAATAGCAATTTATAGAAATGCTAGGCAATTAATAATGATTTTAGTCCATATCAAATTTGTATAATGAAAAAACTTTTCAAATACTTATACAATAGAGTAATTAATTAATAAAGTAAACTTGATTCATGCACCAATCTAAATGAGTTATTTATTAAATATTTAATTATATTTTATAATATTTGTTTAATTA</gDNA_template>
            <first_frame> D  L  N  P  *  R  N  D  P  I  N  P  D  T  K  *  E  S  Y  G  C  D  F  A  F  L  D  K  *  N  V  V  W  C  F  K  R  V  I  N  F  G  *  G  K  T  C  H  S  Y  L  T  L  G  L  G  I  P  Y  I  T  *  M  T  Q  Q  K  R  *  N  T  T  S  K  S  H  I  D  Y  S  *  I  I  I  L  R  N  I  V  E  H  E  L  L  Y  I  A  I  F  F  M  *  E  D  T  I  F  Q  *  N  N  E  I  V  R  K  Y  I  N  I  F  K  K  E  I  Y  N  T  *  E  G  K  K  E  A  D  K  K  K  K  K  I  T  A  H  T  K  *  S  A  K  F  I  H  F  C  M  I  I  S  H  R  V  L  S  F  P  *  R  S  C  *  A  I  Y  R  N  S  N  L  *  K  C  *  A  I  N  N  D  F  S  P  Y  Q  I  C  I  M  K  K  L  F  K  Y  L  Y  N  R  V  I  N  *  *  S  K  L  D  S  C  T  N  L  N  E  L  F  I  K  Y  L  I  I  F  Y  N  I  C  L  I  </first_frame>
            <second_frame>  I  *  I  H  K  E  M  I  Q  L  I  P  I  Q  N  E  N  R  M  D  A  I  L  H  F  S  T  N  K  M  *  F  G  V  L  S  G  *  S  I  L  G  K  E  K  R  V  I  L  T  *  L  L  V  *  E  F  L  I  *  L  K  *  H  S  K  S  D  K  I  Q  P  Q  N  H  T  *  T  T  R  K  *  *  F  *  E  T  *  *  N  M  N  C  C  I  L  L  F  S  S  C  R  R  T  Q  Y  S  N  K  I  M  K  S  *  E  S  T  S  T  Y  L  K  R  K  Y  I  I  L  R  K  E  R  K  K  R  I  K  R  K  R  K  L  L  H  I  Q  N  D  Q  Q  S  S  F  I  F  A  *  *  S  L  I  E  S  C  H  F  H  E  D  H  A  R  Q  F  I  E  I  A  I  Y  R  N  A  R  Q  L  I  M  I  L  V  H  I  K  F  V  *  *  K  N  F  S  N  T  Y  T  I  E  *  L  I  N  K  V  N  L  I  H  A  P  I  *  M  S  Y  L  L  N  I  *  L  Y  F  I  I  F  V  *  L </second_frame>
            <third_frame>   F  E  S  I  K  K  *  S  N  *  S  R  Y  K  M  R  I  V  W  M  R  F  C  I  S  R  Q  I  K  C  S  L  V  F  *  A  G  N  Q  F  W  V  R  K  N  V  S  F  L  L  N  S  W  F  R  N  S  L  Y  N  L  N  D  T  A  K  A  I  K  Y  N  L  K  I  T  H  R  L  L  V  N  N  N  F  K  K  H  S  R  T  *  I  V  V  Y  C  Y  F  L  H  V  G  G  H  N  I  P  I  K  *  *  N  R  K  K  V  H  Q  H  I  *  K  G  N  I  *  Y  L  G  R  K  E  R  S  G  *  K  E  K  E  N  Y  C  T  Y  K  M  I  S  K  V  H  S  F  L  H  D  N  L  S  S  S  L  V  I  S  M  K  I  M  L  G  N  L  *  K  *  Q  F  I  E  M  L  G  N  *  *  *  F  *  S  I  S  N  L  Y  N  E  K  T  F  Q  I  L  I  Q  *  S  N  *  L  I  K  *  T  *  F  M  H  Q  S  K  *  V  I  Y  *  I  F  N  Y  I  L  *  Y  L  F  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0038L16.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="56164" PGL_stop="51123"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56164" e_stop="55985"/>
            <exon e_start="54402" e_stop="54339"/>
            <exon e_start="53905" e_stop="53850"/>
            <exon e_start="53781" e_stop="53706"/>
            <exon e_start="53607" e_stop="53536"/>
            <exon e_start="53425" e_stop="53338"/>
            <exon e_start="53234" e_stop="52976"/>
            <exon e_start="52899" e_stop="52784"/>
            <exon e_start="52685" e_stop="52465"/>
            <exon e_start="52250" e_stop="52222"/>
            <exon e_start="52131" e_stop="52038"/>
            <exon e_start="51921" e_stop="51831"/>
            <exon e_start="51485" e_stop="51123"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.733" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="0.910" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.954" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.950" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.774" e_score="1.000"/>
          <exon-intron don_prob="0.802" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.314" acc_prob="0.762" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.951" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="56164" e_stop="55985" e_length="180"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.733">
            <gDNA_intron_boundary i_start="55984" i_stop="54403" i_length="1582"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="54402" e_stop="54339" e_length="64"/>
          </exon>
          <intron i_serial="2" don_prob="0.955" acc_prob="0.910">
            <gDNA_intron_boundary i_start="54338" i_stop="53906" i_length="433"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="53905" e_stop="53850" e_length="56"/>
          </exon>
          <intron i_serial="3" don_prob="0.984" acc_prob="0.999">
            <gDNA_intron_boundary i_start="53849" i_stop="53782" i_length="68"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="53781" e_stop="53706" e_length="76"/>
          </exon>
          <intron i_serial="4" don_prob="0.954" acc_prob="0.998">
            <gDNA_intron_boundary i_start="53705" i_stop="53608" i_length="98"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="53607" e_stop="53536" e_length="72"/>
          </exon>
          <intron i_serial="5" don_prob="0.950" acc_prob="0.993">
            <gDNA_intron_boundary i_start="53535" i_stop="53426" i_length="110"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="53425" e_stop="53338" e_length="88"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="53337" i_stop="53235" i_length="103"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="53234" e_stop="52976" e_length="259"/>
          </exon>
          <intron i_serial="7" don_prob="0.994" acc_prob="0.774">
            <gDNA_intron_boundary i_start="52975" i_stop="52900" i_length="76"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="52899" e_stop="52784" e_length="116"/>
          </exon>
          <intron i_serial="8" don_prob="0.802" acc_prob="0.995">
            <gDNA_intron_boundary i_start="52783" i_stop="52686" i_length="98"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="52685" e_stop="52465" e_length="221"/>
          </exon>
          <intron i_serial="9" don_prob="0.993" acc_prob="0.997">
            <gDNA_intron_boundary i_start="52464" i_stop="52251" i_length="214"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="52250" e_stop="52222" e_length="29"/>
          </exon>
          <intron i_serial="10" don_prob="0.988" acc_prob="0.984">
            <gDNA_intron_boundary i_start="52221" i_stop="52132" i_length="90"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="52131" e_stop="52038" e_length="94"/>
          </exon>
          <intron i_serial="11" don_prob="0.314" acc_prob="0.762">
            <gDNA_intron_boundary i_start="52037" i_stop="51922" i_length="116"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="51921" e_stop="51831" e_length="91"/>
          </exon>
          <intron i_serial="12" don_prob="0.997" acc_prob="0.951">
            <gDNA_intron_boundary i_start="51830" i_stop="51486" i_length="345"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="51485" e_stop="51123" e_length="363"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56164" stop="55985"/>
              <exon start="54402" stop="54339"/>
              <exon start="53905" stop="53850"/>
              <exon start="53781" stop="53706"/>
              <exon start="53607" stop="53536"/>
              <exon start="53425" stop="53338"/>
              <exon start="53234" stop="52976"/>
              <exon start="52899" stop="52784"/>
              <exon start="52685" stop="52465"/>
              <exon start="52250" stop="52222"/>
              <exon start="52131" stop="52038"/>
              <exon start="51921" stop="51831"/>
              <exon start="51485" stop="51132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746852" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56164" stop="55985"/>
              <exon start="54402" stop="54339"/>
              <exon start="53905" stop="53850"/>
              <exon start="53781" stop="53706"/>
              <exon start="53607" stop="53536"/>
              <exon start="53425" stop="53338"/>
              <exon start="53234" stop="53017"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543589" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56163" stop="55985"/>
              <exon start="54402" stop="54339"/>
              <exon start="53905" stop="53850"/>
              <exon start="53781" stop="53706"/>
              <exon start="53607" stop="53536"/>
              <exon start="53425" stop="53338"/>
              <exon start="53234" stop="53158"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304642" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52831" stop="52784"/>
              <exon start="52685" stop="52465"/>
              <exon start="52250" stop="52222"/>
              <exon start="52131" stop="52038"/>
              <exon start="51921" stop="51831"/>
              <exon start="51485" stop="51123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543588" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52593" stop="52465"/>
              <exon start="52250" stop="52222"/>
              <exon start="52131" stop="52038"/>
              <exon start="51921" stop="51831"/>
              <exon start="51485" stop="51294"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E565590" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52477" stop="52465"/>
              <exon start="52250" stop="52222"/>
              <exon start="52131" stop="52038"/>
              <exon start="51921" stop="51831"/>
              <exon start="51485" stop="51127"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312531" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAATTACAAAAATGCCGCCGGCGAAGCAGCTCCGGGATCTGTTCACGGCGATACTGCTTGTTTTTATTATTGCGGCGGCGGCGAACTTGCCGGTTATGGTACTTTCCGGCGCCGGTGATGTCCGCAGATCGGATTTTCCTGATACTTTCGTTTTCGGTGCCGGTTCTTCTGCTTATCAA : GTTGAAGGGGCAGCATTTGAAGATGGAAGGATGCCTAGCATTTGGGACACCTTTGCTCATGCTG : GTATTTATGGAGGAGCCAACGCGGATGTATCTTGTGACGCATACCATAAATACAAG : GAAGATGTAAAACTCATGGCTGATATGGGTTTGGAAGGGTACAGATTTTCTATTTCGTGGTCGAGACTTATTCCAA : ATGGAAGAGGTTCGATTAATCCTAAAGGGTTACAGTATTACAACAATCTCATCAATGAGCTCCTCCGTCATG : GAATTCAACCACATATTACGTTATGTCACAGTGATATACCACAAACGCTTCAAGATGAATATGGTGGATGGATGAGTCGAAAGATAAT : CGATGATTTCACTGCTTATGCGGATGTGTGCTTCAAGGAATTCGGTGACAGAGTTTCATATTGGACTACATTAAATGAAGTCAATGTGTTCACTATAGGTGGTTATGATAATGGGATCACACCCCCAAATCATTGTTCCCCACCTTTCGGAGCTAAACCCTGTTCCGTAGGTAACTCTTCAACCGAGCCATACATAGTAGCTCATAATATACTACTTGCTCATTCAGCCGCGGTGAGACTATACCGGAGAAAATACAAG : TCAACTCAACATGGTTTTGTGGGATTGAATCTCTTTGCATATCGACCACTCCCTTGTACAAATGTAACAGCTGATATAAATGCAGTACAACGAGTTTATGATTTCTACGTAGGCTG : GTTTGCCAATCCCTTAATATTTGGCGATTATCCTGATGTAATGAAGAGGAATGTTGGGTCTAGATTGCCCGAATTCACACACGAAGAGTCTATGCAAGTTAAAGGCGCTATAGACTTCTTAGCACTGAATCATTATCAAACAATACATGTCAAAGATAGCTCCAGCAGCCTTGAGAGTAAAATCAGGGACTACACCATTGATGGAGCATTCGAACTAATAT : ACACCGAAGAAGATTCTCCACCAGATCAG : TTTGAGTATCCAGTGACACAACCAGGGCTAGGAGGAATATTAGAGTATCTCAAGCAAGCTTATGGCGATATTCCAATATATATTCACGAAAATG : GTCAAATGACAAGACGAAATGGTACGTTAAATGATACAAGAAGGGTGGAATATCTGCAAGCTTACATTGGGAATGTGCTTGAAGCTATGAG : GAATGGATCAAACGTGAAAGGCTATTTCGTGTGGTCATTCTTAGACTGTTTTGAGTTACTGGATGCATATGGTTCAGGATTTGGCTTATACTATGTGGATTTGGATGACAAAGAGTTAACAAGATATCCAAAGCTTTCTTCACATTGGTACACTAATTTCTTGAAGGGGAAAGACTCCAAACATAGTGAAATTCATCAGATTGAAGATAAAGTACTTCATTCTTCACAATAGGTATTTTGTGGTTTCATTTGTATCTTCACAATAATGATGTATTATTTCCTAAGTTGGGGTGGACTTTTCACTTTCAATGCTGCATTCGTGTCGAATTCTATAAAATGCACTATTTTTGGAGAATCCGACAT</gDNA_template>
            <first_frame> Q  I  T  K  M  P  P  A  K  Q  L  R  D  L  F  T  A  I  L  L  V  F  I  I  A  A  A  A  N  L  P  V  M  V  L  S  G  A  G  D  V  R  R  S  D  F  P  D  T  F  V  F  G  A  G  S  S  A  Y  Q  :  V  E  G  A  A  F  E  D  G  R  M  P  S  I  W  D  T  F  A  H  A   : G  I  Y  G  G  A  N  A  D  V  S  C  D  A  Y  H  K  Y  K  :  E  D  V  K  L  M  A  D  M  G  L  E  G  Y  R  F  S  I  S  W  S  R  L  I  P   : N  G  R  G  S  I  N  P  K  G  L  Q  Y  Y  N  N  L  I  N  E  L  L  R  H   : G  I  Q  P  H  I  T  L  C  H  S  D  I  P  Q  T  L  Q  D  E  Y  G  G  W  M  S  R  K  I  I :   D  D  F  T  A  Y  A  D  V  C  F  K  E  F  G  D  R  V  S  Y  W  T  T  L  N  E  V  N  V  F  T  I  G  G  Y  D  N  G  I  T  P  P  N  H  C  S  P  P  F  G  A  K  P  C  S  V  G  N  S  S  T  E  P  Y  I  V  A  H  N  I  L  L  A  H  S  A  A  V  R  L  Y  R  R  K  Y  K  :  S  T  Q  H  G  F  V  G  L  N  L  F  A  Y  R  P  L  P  C  T  N  V  T  A  D  I  N  A  V  Q  R  V  Y  D  F  Y  V  G  W :   F  A  N  P  L  I  F  G  D  Y  P  D  V  M  K  R  N  V  G  S  R  L  P  E  F  T  H  E  E  S  M  Q  V  K  G  A  I  D  F  L  A  L  N  H  Y  Q  T  I  H  V  K  D  S  S  S  S  L  E  S  K  I  R  D  Y  T  I  D  G  A  F  E  L  I   : Y  T  E  E  D  S  P  P  D  Q  :  F  E  Y  P  V  T  Q  P  G  L  G  G  I  L  E  Y  L  K  Q  A  Y  G  D  I  P  I  Y  I  H  E  N   : G  Q  M  T  R  R  N  G  T  L  N  D  T  R  R  V  E  Y  L  Q  A  Y  I  G  N  V  L  E  A  M  R :   N  G  S  N  V  K  G  Y  F  V  W  S  F  L  D  C  F  E  L  L  D  A  Y  G  S  G  F  G  L  Y  Y  V  D  L  D  D  K  E  L  T  R  Y  P  K  L  S  S  H  W  Y  T  N  F  L  K  G  K  D  S  K  H  S  E  I  H  Q  I  E  D  K  V  L  H  S  S  Q  *  V  F  C  G  F  I  C  I  F  T  I  M  M  Y  Y  F  L  S  W  G  G  L  F  T  F  N  A  A  F  V  S  N  S  I  K  C  T  I  F  G  E  S  D   </first_frame>
            <second_frame>  K  L  Q  K  C  R  R  R  S  S  S  G  I  C  S  R  R  Y  C  L  F  L  L  L  R  R  R  R  T  C  R  L  W  Y  F  P  A  P  V  M  S  A  D  R  I  F  L  I  L  S  F  S  V  P  V  L  L  L  I  K :   L  K  G  Q  H  L  K  M  E  G  C  L  A  F  G  T  P  L  L  M  L  :  V  F  M  E  E  P  T  R  M  Y  L  V  T  H  T  I  N  T  R :   K  M  *  N  S  W  L  I  W  V  W  K  G  T  D  F  L  F  R  G  R  D  L  F  Q  :  M  E  E  V  R  L  I  L  K  G  Y  S  I  T  T  I  S  S  M  S  S  S  V  M  :  E  F  N  H  I  L  R  Y  V  T  V  I  Y  H  K  R  F  K  M  N  M  V  D  G  *  V  E  R  *   : S  M  I  S  L  L  M  R  M  C  A  S  R  N  S  V  T  E  F  H  I  G  L  H  *  M  K  S  M  C  S  L  *  V  V  M  I  M  G  S  H  P  Q  I  I  V  P  H  L  S  E  L  N  P  V  P  *  V  T  L  Q  P  S  H  T  *  *  L  I  I  Y  Y  L  L  I  Q  P  R  *  D  Y  T  G  E  N  T  S :   Q  L  N  M  V  L  W  D  *  I  S  L  H  I  D  H  S  L  V  Q  M  *  Q  L  I  *  M  Q  Y  N  E  F  M  I  S  T  *  A   : G  L  P  I  P  *  Y  L  A  I  I  L  M  *  *  R  G  M  L  G  L  D  C  P  N  S  H  T  K  S  L  C  K  L  K  A  L  *  T  S  *  H  *  I  I  I  K  Q  Y  M  S  K  I  A  P  A  A  L  R  V  K  S  G  T  T  P  L  M  E  H  S  N  *  Y  :  T  P  K  K  I  L  H  Q  I  S :   L  S  I  Q  *  H  N  Q  G  *  E  E  Y  *  S  I  S  S  K  L  M  A  I  F  Q  Y  I  F  T  K  M  :  V  K  *  Q  D  E  M  V  R  *  M  I  Q  E  G  W  N  I  C  K  L  T  L  G  M  C  L  K  L  *   : G  M  D  Q  T  *  K  A  I  S  C  G  H  S  *  T  V  L  S  Y  W  M  H  M  V  Q  D  L  A  Y  T  M  W  I  W  M  T  K  S  *  Q  D  I  Q  S  F  L  H  I  G  T  L  I  S  *  R  G  K  T  P  N  I  V  K  F  I  R  L  K  I  K  Y  F  I  L  H  N  R  Y  F  V  V  S  F  V  S  S  Q  *  *  C  I  I  S  *  V  G  V  D  F  S  L  S  M  L  H  S  C  R  I  L  *  N  A  L  F  L  E  N  P  T  </second_frame>
            <third_frame>   N  Y  K  N  A  A  G  E  A  A  P  G  S  V  H  G  D  T  A  C  F  Y  Y  C  G  G  G  E  L  A  G  Y  G  T  F  R  R  R  *  C  P  Q  I  G  F  S  *  Y  F  R  F  R  C  R  F  F  C  L  S   : S  *  R  G  S  I  *  R  W  K  D  A  *  H  L  G  H  L  C  S  C  W :   Y  L  W  R  S  Q  R  G  C  I  L  *  R  I  P  *  I  Q   : G  R  C  K  T  H  G  *  Y  G  F  G  R  V  Q  I  F  Y  F  V  V  E  T  Y  S  K :   W  K  R  F  D  *  S  *  R  V  T  V  L  Q  Q  S  H  Q  *  A  P  P  S  W :   N  S  T  T  Y  Y  V  M  S  Q  *  Y  T  T  N  A  S  R  *  I  W  W  M  D  E  S  K  D  N  :  R  *  F  H  C  L  C  G  C  V  L  Q  G  I  R  *  Q  S  F  I  L  D  Y  I  K  *  S  Q  C  V  H  Y  R  W  L  *  *  W  D  H  T  P  K  S  L  F  P  T  F  R  S  *  T  L  F  R  R  *  L  F  N  R  A  I  H  S  S  S  *  Y  T  T  C  S  F  S  R  G  E  T  I  P  E  K  I  Q   : V  N  S  T  W  F  C  G  I  E  S  L  C  I  S  T  T  P  L  Y  K  C  N  S  *  Y  K  C  S  T  T  S  L  *  F  L  R  R  L  :  V  C  Q  S  L  N  I  W  R  L  S  *  C  N  E  E  E  C  W  V  *  I  A  R  I  H  T  R  R  V  Y  A  S  *  R  R  Y  R  L  L  S  T  E  S  L  S  N  N  T  C  Q  R  *  L  Q  Q  P  *  E  *  N  Q  G  L  H  H  *  W  S  I  R  T  N  I :   H  R  R  R  F  S  T  R  S   : V  *  V  S  S  D  T  T  R  A  R  R  N  I  R  V  S  Q  A  S  L  W  R  Y  S  N  I  Y  S  R  K  W :   S  N  D  K  T  K  W  Y  V  K  *  Y  K  K  G  G  I  S  A  S  L  H  W  E  C  A  *  S  Y  E  :  E  W  I  K  R  E  R  L  F  R  V  V  I  L  R  L  F  *  V  T  G  C  I  W  F  R  I  W  L  I  L  C  G  F  G  *  Q  R  V  N  K  I  S  K  A  F  F  T  L  V  H  *  F  L  E  G  E  R  L  Q  T  *  *  N  S  S  D  *  R  *  S  T  S  F  F  T  I  G  I  L  W  F  H  L  Y  L  H  N  N  D  V  L  F  P  K  L  G  W  T  F  H  F  Q  C  C  I  R  V  E  F  Y  K  M  H  Y  F  W  R  I  R  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0038L16.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56164" stop="55985"/>
                    <exon start="54402" stop="54339"/>
                    <exon start="53905" stop="53850"/>
                    <exon start="53781" stop="53706"/>
                    <exon start="53607" stop="53536"/>
                    <exon start="53425" stop="53338"/>
                    <exon start="53234" stop="52976"/>
                    <exon start="52899" stop="52784"/>
                    <exon start="52685" stop="52465"/>
                    <exon start="52250" stop="52222"/>
                    <exon start="52131" stop="52038"/>
                    <exon start="51921" stop="51831"/>
                    <exon start="51485" stop="51254"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1575</number_coding_nucleotides>
                  <number_encoded_amino_acids>525</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QITKMPPAKQLRDLFTAILLVFIIAAAANLPVMVLSGAGDVRRSDFPDTFVFGAGSSAYQVEGAAFEDGRMPSIWDTFAHAGIYGGANADVSCDAYHKYKEDVKLMADMGLEGYRFSISWSRLIPNGRGSINPKGLQYYNNLINELLRHGIQPHITLCHSDIPQTLQDEYGGWMSRKIIDDFTAYADVCFKEFGDRVSYWTTLNEVNVFTIGGYDNGITPPNHCSPPFGAKPCSVGNSSTEPYIVAHNILLAHSAAVRLYRRKYKSTQHGFVGLNLFAYRPLPCTNVTADINAVQRVYDFYVGWFANPLIFGDYPDVMKRNVGSRLPEFTHEESMQVKGAIDFLALNHYQTIHVKDSSSSLESKIRDYTIDGAFELIYTEEDSPPDQFEYPVTQPGLGGILEYLKQAYGDIPIYIHENGQMTRRNGTLNDTRRVEYLQAYIGNVLEAMRNGSNVKGYFVWSFLDCFELLDAYGSGFGLYYVDLDDKELTRYPKLSSHWYTNFLKGKDSKHSEIHQIEDKVLHSSQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="61246" PGL_stop="60494"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="61246" e_stop="60494"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="61246" e_stop="60494" e_length="753"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61246" stop="60494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724410" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61236" stop="60947"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289988" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61234" stop="60635"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321395" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61234" stop="60724"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295700" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61188" stop="60880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337958" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACCAGGCACTGAAAATCATCTTCACACATTCCACAAACCTACAAAAAGGCTTTTCTACCTCTTTTGCCCACAAAAATCACTAACCAAATTCTCATTCTTGAATTTGTTACAACTTACAAGTGTTTTTGCTGATAAATTTGGTGTTTAATTCCATTGGATTGAGCAAGGGGTTTGATTCTATTCATCTTTTTTTAGATGTCGAATTCATGTATGGTTGATGGATTTTTCTCAAAACTATCAGAGGATTTGATTCTCAATATATTTTTCAAGCTAGAAGATGATCCAAGGAACTGGGCTCGTTTATCTTGTGTTTCAACGAAATTTGCATTTCTGATTCATACTATTTGTTACAAATCGAAATGCTCTGCAACTATTCCTTCGGTTGTTTCCGATCTAGTAAGTTCGACGTCTTCGTGTCCTCCAGGTGGGTGGTCTTCACTTTACAAGCTAGCTGTATGCTGTCCGGGTCTTCATCAAGCTGGTGTTCTTCTGGAGAATTCTGATTTTGGGCTTGAACGTGAAATTGGTCCGGATGAGAGTTATTCGGGTCGGGTTTTCCCTAAAGCTGAGCTGATTCCTTCTTCATCGAGTAATAATAATAATCGGTGTGATTCTGGTGAAGTTGTTGATTGTGGTTGGTCTTTGTTTGATGATCTTATGTTTGATACTGTTTATGATGCTTCTGAATCGAGTTCAAATCAGATTGAGGTCGTCGAGGAGGAACCCACAAGCTTTGTGGTGAATCCCACAAG</gDNA_template>
            <first_frame> N  Q  A  L  K  I  I  F  T  H  S  T  N  L  Q  K  G  F  S  T  S  F  A  H  K  N  H  *  P  N  S  H  S  *  I  C  Y  N  L  Q  V  F  L  L  I  N  L  V  F  N  S  I  G  L  S  K  G  F  D  S  I  H  L  F  L  D  V  E  F  M  Y  G  *  W  I  F  L  K  T  I  R  G  F  D  S  Q  Y  I  F  Q  A  R  R  *  S  K  E  L  G  S  F  I  L  C  F  N  E  I  C  I  S  D  S  Y  Y  L  L  Q  I  E  M  L  C  N  Y  S  F  G  C  F  R  S  S  K  F  D  V  F  V  S  S  R  W  V  V  F  T  L  Q  A  S  C  M  L  S  G  S  S  S  S  W  C  S  S  G  E  F  *  F  W  A  *  T  *  N  W  S  G  *  E  L  F  G  S  G  F  P  *  S  *  A  D  S  F  F  I  E  *  *  *  *  S  V  *  F  W  *  S  C  *  L  W  L  V  F  V  *  *  S  Y  V  *  Y  C  L  *  C  F  *  I  E  F  K  S  D  *  G  R  R  G  G  T  H  K  L  C  G  E  S  H  K </first_frame>
            <second_frame>  T  R  H  *  K  S  S  S  H  I  P  Q  T  Y  K  K  A  F  L  P  L  L  P  T  K  I  T  N  Q  I  L  I  L  E  F  V  T  T  Y  K  C  F  C  *  *  I  W  C  L  I  P  L  D  *  A  R  G  L  I  L  F  I  F  F  *  M  S  N  S  C  M  V  D  G  F  F  S  K  L  S  E  D  L  I  L  N  I  F  F  K  L  E  D  D  P  R  N  W  A  R  L  S  C  V  S  T  K  F  A  F  L  I  H  T  I  C  Y  K  S  K  C  S  A  T  I  P  S  V  V  S  D  L  V  S  S  T  S  S  C  P  P  G  G  W  S  S  L  Y  K  L  A  V  C  C  P  G  L  H  Q  A  G  V  L  L  E  N  S  D  F  G  L  E  R  E  I  G  P  D  E  S  Y  S  G  R  V  F  P  K  A  E  L  I  P  S  S  S  S  N  N  N  N  R  C  D  S  G  E  V  V  D  C  G  W  S  L  F  D  D  L  M  F  D  T  V  Y  D  A  S  E  S  S  S  N  Q  I  E  V  V  E  E  E  P  T  S  F  V  V  N  P  T   </second_frame>
            <third_frame>   P  G  T  E  N  H  L  H  T  F  H  K  P  T  K  R  L  F  Y  L  F  C  P  Q  K  S  L  T  K  F  S  F  L  N  L  L  Q  L  T  S  V  F  A  D  K  F  G  V  *  F  H  W  I  E  Q  G  V  *  F  Y  S  S  F  F  R  C  R  I  H  V  W  L  M  D  F  S  Q  N  Y  Q  R  I  *  F  S  I  Y  F  S  S  *  K  M  I  Q  G  T  G  L  V  Y  L  V  F  Q  R  N  L  H  F  *  F  I  L  F  V  T  N  R  N  A  L  Q  L  F  L  R  L  F  P  I  *  *  V  R  R  L  R  V  L  Q  V  G  G  L  H  F  T  S  *  L  Y  A  V  R  V  F  I  K  L  V  F  F  W  R  I  L  I  L  G  L  N  V  K  L  V  R  M  R  V  I  R  V  G  F  S  L  K  L  S  *  F  L  L  H  R  V  I  I  I  I  G  V  I  L  V  K  L  L  I  V  V  G  L  C  L  M  I  L  C  L  I  L  F  M  M  L  L  N  R  V  Q  I  R  L  R  S  S  R  R  N  P  Q  A  L  W  *  I  P  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0038L16.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61050" stop="60496"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>555</number_coding_nucleotides>
                  <number_encoded_amino_acids>185</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MSNSCMVDGFFSKLSEDLILNIFFKLEDDPRNWARLSCVSTKFAFLIHTICYKSKCSATIPSVVSDLVSSTSSCPPGGWSSLYKLAVCCPGLHQAGVLLENSDFGLEREIGPDESYSGRVFPKAELIPSSSSNNNNRCDSGEVVDCGWSLFDDLMFDTVYDASESSSNQIEVVEEEPTSFVVNPT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="68646" PGL_stop="62401"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68608" e_stop="68063"/>
            <exon e_start="67795" e_stop="67730"/>
            <exon e_start="67627" e_stop="67553"/>
            <exon e_start="67457" e_stop="67343"/>
            <exon e_start="67257" e_stop="67211"/>
            <exon e_start="67095" e_stop="67038"/>
            <exon e_start="65268" e_stop="65219"/>
            <exon e_start="65091" e_stop="65035"/>
            <exon e_start="64951" e_stop="64830"/>
            <exon e_start="64747" e_stop="64649"/>
            <exon e_start="63075" e_stop="63042"/>
            <exon e_start="62868" e_stop="62753"/>
            <exon e_start="62673" e_stop="62401"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.998"/>
          <exon-intron don_prob="0.994" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.611" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.732" acc_prob="0.949" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.791" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.433" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.906" acc_prob="0.964" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="68608" e_stop="68063" e_length="546"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="68062" i_stop="67796" i_length="267"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="67795" e_stop="67730" e_length="66"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.979">
            <gDNA_intron_boundary i_start="67729" i_stop="67628" i_length="102"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="67627" e_stop="67553" e_length="75"/>
          </exon>
          <intron i_serial="3" don_prob="0.964" acc_prob="0.990">
            <gDNA_intron_boundary i_start="67552" i_stop="67458" i_length="95"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="67457" e_stop="67343" e_length="115"/>
          </exon>
          <intron i_serial="4" don_prob="0.982" acc_prob="0.999">
            <gDNA_intron_boundary i_start="67342" i_stop="67258" i_length="85"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="67257" e_stop="67211" e_length="47"/>
          </exon>
          <intron i_serial="5" don_prob="0.611" acc_prob="0.999">
            <gDNA_intron_boundary i_start="67210" i_stop="67096" i_length="115"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="67095" e_stop="67038" e_length="58"/>
          </exon>
          <intron i_serial="6" don_prob="0.732" acc_prob="0.949">
            <gDNA_intron_boundary i_start="67037" i_stop="65269" i_length="1769"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="65268" e_stop="65219" e_length="50"/>
          </exon>
          <intron i_serial="7" don_prob="0.995" acc_prob="0.963">
            <gDNA_intron_boundary i_start="65218" i_stop="65092" i_length="127"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="65091" e_stop="65035" e_length="57"/>
          </exon>
          <intron i_serial="8" don_prob="0.978" acc_prob="0.791">
            <gDNA_intron_boundary i_start="65034" i_stop="64952" i_length="83"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="64951" e_stop="64830" e_length="122"/>
          </exon>
          <intron i_serial="9" don_prob="0.982" acc_prob="0.433">
            <gDNA_intron_boundary i_start="64829" i_stop="64748" i_length="82"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="64747" e_stop="64649" e_length="99"/>
          </exon>
          <intron i_serial="10" don_prob="0.999" acc_prob="0.961">
            <gDNA_intron_boundary i_start="64648" i_stop="63076" i_length="1573"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="63075" e_stop="63042" e_length="34"/>
          </exon>
          <intron i_serial="11" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="63041" i_stop="62869" i_length="173"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="62868" e_stop="62753" e_length="116"/>
          </exon>
          <intron i_serial="12" don_prob="0.906" acc_prob="0.964">
            <gDNA_intron_boundary i_start="62752" i_stop="62674" i_length="79"/>
          </intron>
          <exon e_serial="13" e_score="0.993">
            <gDNA_exon_boundary e_start="62673" e_stop="62401" e_length="273"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68608" stop="68063"/>
              <exon start="67795" stop="67730"/>
              <exon start="67627" stop="67605"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342653" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68157" stop="68063"/>
              <exon start="67795" stop="67730"/>
              <exon start="67627" stop="67553"/>
              <exon start="67457" stop="67343"/>
              <exon start="67257" stop="67211"/>
              <exon start="67095" stop="67038"/>
              <exon start="65268" stop="65219"/>
              <exon start="65091" stop="65035"/>
              <exon start="64951" stop="64933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271755" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68154" stop="68063"/>
              <exon start="67795" stop="67730"/>
              <exon start="67627" stop="67553"/>
              <exon start="67457" stop="67343"/>
              <exon start="67257" stop="67211"/>
              <exon start="67095" stop="67038"/>
              <exon start="65268" stop="65219"/>
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              <exon start="64951" stop="64830"/>
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              <exon start="63075" stop="63042"/>
              <exon start="62868" stop="62849"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703392" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68154" stop="68063"/>
              <exon start="67795" stop="67730"/>
              <exon start="67627" stop="67553"/>
              <exon start="67457" stop="67343"/>
              <exon start="67257" stop="67211"/>
              <exon start="67095" stop="67038"/>
              <exon start="65268" stop="65219"/>
              <exon start="65091" stop="65035"/>
              <exon start="64951" stop="64898"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341527" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68154" stop="68063"/>
              <exon start="67795" stop="67730"/>
              <exon start="67627" stop="67553"/>
              <exon start="67457" stop="67381"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E399744" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68152" stop="68063"/>
              <exon start="67795" stop="67730"/>
              <exon start="67627" stop="67553"/>
              <exon start="67457" stop="67343"/>
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              <exon start="67095" stop="67038"/>
              <exon start="65268" stop="65219"/>
              <exon start="65091" stop="65035"/>
              <exon start="64951" stop="64830"/>
              <exon start="64747" stop="64649"/>
              <exon start="63075" stop="63042"/>
              <exon start="62868" stop="62827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700685" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68152" stop="68063"/>
              <exon start="67795" stop="67730"/>
              <exon start="67627" stop="67553"/>
              <exon start="67457" stop="67343"/>
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              <exon start="67095" stop="67038"/>
              <exon start="65268" stop="65219"/>
              <exon start="65091" stop="65042"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246019" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68151" stop="68063"/>
              <exon start="67795" stop="67730"/>
              <exon start="67627" stop="67553"/>
              <exon start="67457" stop="67343"/>
              <exon start="67257" stop="67211"/>
              <exon start="67095" stop="67038"/>
              <exon start="65268" stop="65219"/>
              <exon start="65091" stop="65035"/>
              <exon start="64951" stop="64830"/>
              <exon start="64747" stop="64649"/>
              <exon start="63075" stop="63060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704114" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68151" stop="68063"/>
              <exon start="67795" stop="67730"/>
              <exon start="67627" stop="67553"/>
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              <exon start="67257" stop="67211"/>
              <exon start="67095" stop="67038"/>
              <exon start="65268" stop="65219"/>
              <exon start="65091" stop="65035"/>
              <exon start="64951" stop="64929"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288997" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68151" stop="68063"/>
              <exon start="67795" stop="67730"/>
              <exon start="67627" stop="67553"/>
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              <exon start="65268" stop="65219"/>
              <exon start="65091" stop="65044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315505" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68151" stop="68063"/>
              <exon start="67795" stop="67730"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270766" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68151" stop="68063"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273178" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68151" stop="68063"/>
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              <exon start="65091" stop="65066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303833" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68151" stop="68063"/>
              <exon start="67795" stop="67730"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277755" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68145" stop="68063"/>
              <exon start="67795" stop="67730"/>
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              <exon start="65091" stop="65035"/>
              <exon start="64951" stop="64896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68145" stop="68063"/>
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              <exon start="65268" stop="65219"/>
              <exon start="65091" stop="65070"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338532" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68130" stop="68063"/>
              <exon start="67795" stop="67730"/>
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              <exon start="64951" stop="64830"/>
              <exon start="64747" stop="64708"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730037" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68073" stop="68063"/>
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              <exon start="65091" stop="65072"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728830" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68069" stop="68063"/>
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              <exon start="67257" stop="67247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311338" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67782" stop="67730"/>
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              <exon start="67095" stop="67038"/>
              <exon start="65268" stop="65219"/>
              <exon start="65091" stop="65035"/>
              <exon start="64951" stop="64830"/>
              <exon start="64747" stop="64649"/>
              <exon start="63075" stop="63042"/>
              <exon start="62868" stop="62802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726353" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67768" stop="67730"/>
              <exon start="67627" stop="67553"/>
              <exon start="67457" stop="67343"/>
              <exon start="67257" stop="67211"/>
              <exon start="67095" stop="67038"/>
              <exon start="65268" stop="65219"/>
              <exon start="65091" stop="65035"/>
              <exon start="64951" stop="64830"/>
              <exon start="64747" stop="64715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253820" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67768" stop="67730"/>
              <exon start="67627" stop="67553"/>
              <exon start="67457" stop="67343"/>
              <exon start="67257" stop="67211"/>
              <exon start="67095" stop="67038"/>
              <exon start="65268" stop="65219"/>
              <exon start="65091" stop="65035"/>
              <exon start="64951" stop="64898"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256458" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67767" stop="67730"/>
              <exon start="67627" stop="67553"/>
              <exon start="67457" stop="67343"/>
              <exon start="67257" stop="67211"/>
              <exon start="67095" stop="67038"/>
              <exon start="65268" stop="65219"/>
              <exon start="65091" stop="65035"/>
              <exon start="64951" stop="64830"/>
              <exon start="64747" stop="64649"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709677" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67622" stop="67553"/>
              <exon start="67457" stop="67343"/>
              <exon start="67257" stop="67211"/>
              <exon start="67095" stop="67038"/>
              <exon start="65268" stop="65219"/>
              <exon start="65091" stop="65035"/>
              <exon start="64951" stop="64830"/>
              <exon start="64747" stop="64649"/>
              <exon start="63075" stop="63042"/>
              <exon start="62868" stop="62813"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339069" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67556" stop="67553"/>
              <exon start="67457" stop="67343"/>
              <exon start="67257" stop="67211"/>
              <exon start="67095" stop="67038"/>
              <exon start="65268" stop="65219"/>
              <exon start="65091" stop="65035"/>
              <exon start="64951" stop="64830"/>
              <exon start="64747" stop="64649"/>
              <exon start="63075" stop="63042"/>
              <exon start="62868" stop="62753"/>
              <exon start="62673" stop="62565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262412" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65245" stop="65219"/>
              <exon start="65091" stop="65035"/>
              <exon start="64951" stop="64830"/>
              <exon start="64747" stop="64649"/>
              <exon start="63075" stop="63042"/>
              <exon start="62868" stop="62772"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64881" stop="64830"/>
              <exon start="64747" stop="64649"/>
              <exon start="63075" stop="63042"/>
              <exon start="62868" stop="62753"/>
              <exon start="62673" stop="62401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346155" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62858" stop="62753"/>
              <exon start="62673" stop="62422"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217961" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62836" stop="62753"/>
              <exon start="62673" stop="62401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351570" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62836" stop="62753"/>
              <exon start="62673" stop="62401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352650" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62836" stop="62753"/>
              <exon start="62673" stop="62401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354954" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62823" stop="62753"/>
              <exon start="62673" stop="62422"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218181" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62822" stop="62753"/>
              <exon start="62673" stop="62401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221335" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCGATCTTCCCAGGTATGTTCTCTAATGGAGGTTACGTAAATCGTTTTTTTTAGCTTTAATTGATATAATCATCAATATATCGTCAAAATATAGTTCAATTTTTTCCTTCTTTCCCATTTACCTTGCTTGTCAATGCAAAAATGTCCGGGTTGTATAAATTAATGTCAGTAAAATTGTGGAAAGTTGCTTTGTTTATTCTTTAGATGATCAAGATACGTTTCTGCGACTGAAATTGGTTTTGCAACTGAATAATTACTAGAGTTGAAGCTTTTATCCTTTTTCTTTTCCCGTTTTGTCCTTAGAGAGAATGTATGAACTGTTTTAAGTCGTTGTTGTTTTTTGCTTAACTGCAAGAGGTGCTTTTTTCTTGTCCTTGTGGTCAATTAACTGCAAGAGGTGCTTGTTTCTTGTTTTTGTGGACAATTGACTGCAAGTGAATGTGGTTTTGCCTTTCAGGAACAATGAGTCGGTCGAGTAGGACACTTTATGTTGGCAATCTTCCTGGTGATGTTCGTGAGCGTGAAGTGGAAGATCTCTTTTACAAG : TATGGACCGATTGCACATATTGAGCTGAAAATTCCACCAAGACCCCCTGGTTATGCTTTTGTTGAG : TTTGAAGAGGCTCGTGATGCTGAAGATGCTATTCGTGGTCGTGATGGCTATGATTTTGATGGGCACCGTCTGCGG : GTTGAGCTTGCACATGGCGGGCGTGGTAACTCATCATCAAATGATCGTTATGGTGGTGGCGGTGGCGGCCGTGGTCAGCGTGGTGGAGGAGTGTCAAGACGTTCAGATTATCGAG : TGTTAGTTACAGGATTACCCCATTCAGCATCGTGGCAGGATCTCAAG : GATCACATGCGCCGTGCTGGGGATGTTTGTTTCTCCCAAGTTTTCCGTGACGGGAGTG : GAACCACTGGTATAATTGATTATACAAACTATGATGACATGAAATATGCT : ATCAAAAAGCTTGATGACTCTGAGTTTCGAAATGCCTTTTCTCGTGCGACAATTCGA : GTTAAAGAATATGACCGCAGTCGAAGTCGCAGCCGCAGTCGCAGTCGCTCTTACTCCAGAGGGAAGAGTGTTAGTCGAAGCCGAAGCCGTAGCCGAAGTAGAAGCCGAAGCAAGAGCAAAAG : CAAATCTCCTAAAGTTAAGTCTTCAAAGCGCTCAAGATCTCGTTCAAGGTCTGTGTCTTCTCAGTCTCGTTCTGGGTCAAAAGGACGTCCTGTCTCAAG : ATCTCCATCAAGGTCCAGATCACCAGCACCAGCT : CGTTCAAAACAATTAAGTGAAAGTCCCAAAAGACGCACTCCCAGCAGTAGCCCCAAAAGACGCACTCCAAGCAGAAGCCCAAGCCGGAGTAGGAGCCGTAGCCAAAGTTTGTCCAG : GTAAGATTGCTGGAATCATCAGTGATTGAGGGTGCCATCATGCTGTGTTTGAGCAGCCTGGTCCACAGTTGGGAGCCCAAGTGACCGGAAGAGTCTGTTGCTCTGCTTACATCAAAATATTTCTGTGTCATTGAACCATGTCAAGACTGTAATAATTATTATACTTGTTTTTGTAGCTCTTAATCTTGGTAAAAGACTGCAATATAGTAGATGATATTGTGAAAAACGGAATTTAATTTCCTTGAATTGCAGATTATTGTTGGTCGACTGATG</gDNA_template>
            <first_frame> S  I  F  P  G  M  F  S  N  G  G  Y  V  N  R  F  F  *  L  *  L  I  *  S  S  I  Y  R  Q  N  I  V  Q  F  F  P  S  F  P  F  T  L  L  V  N  A  K  M  S  G  L  Y  K  L  M  S  V  K  L  W  K  V  A  L  F  I  L  *  M  I  K  I  R  F  C  D  *  N  W  F  C  N  *  I  I  T  R  V  E  A  F  I  L  F  L  F  P  F  C  P  *  R  E  C  M  N  C  F  K  S  L  L  F  F  A  *  L  Q  E  V  L  F  S  C  P  C  G  Q  L  T  A  R  G  A  C  F  L  F  L  W  T  I  D  C  K  *  M  W  F  C  L  S  G  T  M  S  R  S  S  R  T  L  Y  V  G  N  L  P  G  D  V  R  E  R  E  V  E  D  L  F  Y  K  :  Y  G  P  I  A  H  I  E  L  K  I  P  P  R  P  P  G  Y  A  F  V  E  :  F  E  E  A  R  D  A  E  D  A  I  R  G  R  D  G  Y  D  F  D  G  H  R  L  R  :  V  E  L  A  H  G  G  R  G  N  S  S  S  N  D  R  Y  G  G  G  G  G  G  R  G  Q  R  G  G  G  V  S  R  R  S  D  Y  R   : V  L  V  T  G  L  P  H  S  A  S  W  Q  D  L  K  :  D  H  M  R  R  A  G  D  V  C  F  S  Q  V  F  R  D  G  S   : G  T  T  G  I  I  D  Y  T  N  Y  D  D  M  K  Y  A  :  I  K  K  L  D  D  S  E  F  R  N  A  F  S  R  A  T  I  R  :  V  K  E  Y  D  R  S  R  S  R  S  R  S  R  S  R  S  Y  S  R  G  K  S  V  S  R  S  R  S  R  S  R  S  R  S  R  S  K  S  K  S :   K  S  P  K  V  K  S  S  K  R  S  R  S  R  S  R  S  V  S  S  Q  S  R  S  G  S  K  G  R  P  V  S  R :   S  P  S  R  S  R  S  P  A  P  A  :  R  S  K  Q  L  S  E  S  P  K  R  R  T  P  S  S  S  P  K  R  R  T  P  S  R  S  P  S  R  S  R  S  R  S  Q  S  L  S  R :   *  D  C  W  N  H  Q  *  L  R  V  P  S  C  C  V  *  A  A  W  S  T  V  G  S  P  S  D  R  K  S  L  L  L  C  L  H  Q  N  I  S  V  S  L  N  H  V  K  T  V  I  I  I  I  L  V  F  V  A  L  N  L  G  K  R  L  Q  Y  S  R  *  Y  C  E  K  R  N  L  I  S  L  N  C  R  L  L  L  V  D  *   </first_frame>
            <second_frame>  R  S  S  Q  V  C  S  L  M  E  V  T  *  I  V  F  F  S  F  N  *  Y  N  H  Q  Y  I  V  K  I  *  F  N  F  F  L  L  S  H  L  P  C  L  S  M  Q  K  C  P  G  C  I  N  *  C  Q  *  N  C  G  K  L  L  C  L  F  F  R  *  S  R  Y  V  S  A  T  E  I  G  F  A  T  E  *  L  L  E  L  K  L  L  S  F  F  F  S  R  F  V  L  R  E  N  V  *  T  V  L  S  R  C  C  F  L  L  N  C  K  R  C  F  F  L  V  L  V  V  N  *  L  Q  E  V  L  V  S  C  F  C  G  Q  L  T  A  S  E  C  G  F  A  F  Q  E  Q  *  V  G  R  V  G  H  F  M  L  A  I  F  L  V  M  F  V  S  V  K  W  K  I  S  F  T  S :   M  D  R  L  H  I  L  S  *  K  F  H  Q  D  P  L  V  M  L  L  L  S :   L  K  R  L  V  M  L  K  M  L  F  V  V  V  M  A  M  I  L  M  G  T  V  C  G :   L  S  L  H  M  A  G  V  V  T  H  H  Q  M  I  V  M  V  V  A  V  A  A  V  V  S  V  V  E  E  C  Q  D  V  Q  I  I  E  :  C  *  L  Q  D  Y  P  I  Q  H  R  G  R  I  S  R :   I  T  C  A  V  L  G  M  F  V  S  P  K  F  S  V  T  G  V  :  E  P  L  V  *  L  I  I  Q  T  M  M  T  *  N  M  L :   S  K  S  L  M  T  L  S  F  E  M  P  F  L  V  R  Q  F  E :   L  K  N  M  T  A  V  E  V  A  A  A  V  A  V  A  L  T  P  E  G  R  V  L  V  E  A  E  A  V  A  E  V  E  A  E  A  R  A  K   : A  N  L  L  K  L  S  L  Q  S  A  Q  D  L  V  Q  G  L  C  L  L  S  L  V  L  G  Q  K  D  V  L  S  Q   : D  L  H  Q  G  P  D  H  Q  H  Q  L :   V  Q  N  N  *  V  K  V  P  K  D  A  L  P  A  V  A  P  K  D  A  L  Q  A  E  A  Q  A  G  V  G  A  V  A  K  V  C  P   : G  K  I  A  G  I  I  S  D  *  G  C  H  H  A  V  F  E  Q  P  G  P  Q  L  G  A  Q  V  T  G  R  V  C  C  S  A  Y  I  K  I  F  L  C  H  *  T  M  S  R  L  *  *  L  L  Y  L  F  L  *  L  L  I  L  V  K  D  C  N  I  V  D  D  I  V  K  N  G  I  *  F  P  *  I  A  D  Y  C  W  S  T  D  </second_frame>
            <third_frame>   D  L  P  R  Y  V  L  *  W  R  L  R  K  S  F  F  L  A  L  I  D  I  I  I  N  I  S  S  K  Y  S  S  I  F  S  F  F  P  I  Y  L  A  C  Q  C  K  N  V  R  V  V  *  I  N  V  S  K  I  V  E  S  C  F  V  Y  S  L  D  D  Q  D  T  F  L  R  L  K  L  V  L  Q  L  N  N  Y  *  S  *  S  F  Y  P  F  S  F  P  V  L  S  L  E  R  M  Y  E  L  F  *  V  V  V  V  F  C  L  T  A  R  G  A  F  F  L  S  L  W  S  I  N  C  K  R  C  L  F  L  V  F  V  D  N  *  L  Q  V  N  V  V  L  P  F  R  N  N  E  S  V  E  *  D  T  L  C  W  Q  S  S  W  *  C  S  *  A  *  S  G  R  S  L  L  Q   : V  W  T  D  C  T  Y  *  A  E  N  S  T  K  T  P  W  L  C  F  C  *   : V  *  R  G  S  *  C  *  R  C  Y  S  W  S  *  W  L  *  F  *  W  A  P  S  A   : G  *  A  C  T  W  R  A  W  *  L  I  I  K  *  S  L  W  W  W  R  W  R  P  W  S  A  W  W  R  S  V  K  T  F  R  L  S  S :   V  S  Y  R  I  T  P  F  S  I  V  A  G  S  Q   : G  S  H  A  P  C  W  G  C  L  F  L  P  S  F  P  *  R  E  W :   N  H  W  Y  N  *  L  Y  K  L  *  *  H  E  I  C   : Y  Q  K  A  *  *  L  *  V  S  K  C  L  F  S  C  D  N  S   : S  *  R  I  *  P  Q  S  K  S  Q  P  Q  S  Q  S  L  L  L  Q  R  E  E  C  *  S  K  P  K  P  *  P  K  *  K  P  K  Q  E  Q  K  :  Q  I  S  *  S  *  V  F  K  A  L  K  I  S  F  K  V  C  V  F  S  V  S  F  W  V  K  R  T  S  C  L  K  :  I  S  I  K  V  Q  I  T  S  T  S   : S  F  K  T  I  K  *  K  S  Q  K  T  H  S  Q  Q  *  P  Q  K  T  H  S  K  Q  K  P  K  P  E  *  E  P  *  P  K  F  V  Q  :  V  R  L  L  E  S  S  V  I  E  G  A  I  M  L  C  L  S  S  L  V  H  S  W  E  P  K  *  P  E  E  S  V  A  L  L  T  S  K  Y  F  C  V  I  E  P  C  Q  D  C  N  N  Y  Y  T  C  F  C  S  S  *  S  W  *  K  T  A  I  *  *  M  I  L  *  K  T  E  F  N  F  L  E  L  Q  I  I  V  G  R  L  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0038L16.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68170" stop="68063"/>
                    <exon start="67795" stop="67730"/>
                    <exon start="67627" stop="67553"/>
                    <exon start="67457" stop="67343"/>
                    <exon start="67257" stop="67211"/>
                    <exon start="67095" stop="67038"/>
                    <exon start="65268" stop="65219"/>
                    <exon start="65091" stop="65035"/>
                    <exon start="64951" stop="64830"/>
                    <exon start="64747" stop="64649"/>
                    <exon start="63075" stop="63042"/>
                    <exon start="62868" stop="62753"/>
                    <exon start="62673" stop="62670"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>948</number_coding_nucleotides>
                  <number_encoded_amino_acids>316</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MWFCLSGTMSRSSRTLYVGNLPGDVREREVEDLFYKYGPIAHIELKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGRGNSSSNDRYGGGGGGRGQRGGGVSRRSDYRVLVTGLPHSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIIDYTNYDDMKYAIKKLDDSEFRNAFSRATIRVKEYDRSRSRSRSRSRSYSRGKSVSRSRSRSRSRSRSKSKSKSPKVKSSKRSRSRSRSVSSQSRSGSKGRPVSRSPSRSRSPAPARSKQLSESPKRRTPSSSPKRRTPSRSPSRSRSRSQSLSR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="68608" e_stop="68063"/>
            <exon e_start="67795" e_stop="67730"/>
            <exon e_start="67627" e_stop="67553"/>
            <exon e_start="67457" e_stop="67343"/>
            <exon e_start="67257" e_stop="67211"/>
            <exon e_start="67095" e_stop="67038"/>
            <exon e_start="65268" e_stop="65219"/>
            <exon e_start="65091" e_stop="65035"/>
            <exon e_start="64951" e_stop="64830"/>
            <exon e_start="64747" e_stop="64649"/>
            <exon e_start="63617" e_stop="63530"/>
            <exon e_start="63443" e_stop="63042"/>
            <exon e_start="62868" e_stop="62753"/>
            <exon e_start="62673" e_stop="62401"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.998"/>
          <exon-intron don_prob="0.994" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.611" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.732" acc_prob="0.949" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.791" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.433" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.846" e_score="1.000"/>
          <exon-intron don_prob="0.956" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.906" acc_prob="0.964" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="68608" e_stop="68063" e_length="546"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="68062" i_stop="67796" i_length="267"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="67795" e_stop="67730" e_length="66"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.979">
            <gDNA_intron_boundary i_start="67729" i_stop="67628" i_length="102"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="67627" e_stop="67553" e_length="75"/>
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          <intron i_serial="3" don_prob="0.964" acc_prob="0.990">
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          <intron i_serial="5" don_prob="0.611" acc_prob="0.999">
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          <exon e_serial="7" e_score="1.000">
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          </exon>
          <intron i_serial="7" don_prob="0.995" acc_prob="0.963">
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          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
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              <exon start="68608" stop="68063"/>
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            <referenceDNA id="SGN-E342653" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E271755" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E341527" strand="+"/>
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          <PGS_line>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E399744" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246019" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746296" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E288997" strand="+"/>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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            <referenceDNA id="SGN-E303833" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E277755" strand="-"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E316391" strand="+"/>
          </PGS_line>
          <PGS_line>
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            <referenceDNA id="SGN-E338532" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730037" strand="+"/>
          </PGS_line>
          <PGS_line>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728830" strand="+"/>
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          <PGS_line>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311338" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E253820" strand="+"/>
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          <PGS_line>
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          <PGS_line>
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            <referenceDNA id="SGN-E709677" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E377977" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E233163" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E233047" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63409" stop="63042"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251044" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63363" stop="63042"/>
              <exon start="62868" stop="62753"/>
              <exon start="62673" stop="62401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377976" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63290" stop="63042"/>
              <exon start="62868" stop="62753"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252564" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62858" stop="62753"/>
              <exon start="62673" stop="62422"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217961" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62836" stop="62753"/>
              <exon start="62673" stop="62401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351570" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62836" stop="62753"/>
              <exon start="62673" stop="62401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352650" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62836" stop="62753"/>
              <exon start="62673" stop="62401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354954" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62823" stop="62753"/>
              <exon start="62673" stop="62422"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218181" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62822" stop="62753"/>
              <exon start="62673" stop="62401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221335" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCGATCTTCCCAGGTATGTTCTCTAATGGAGGTTACGTAAATCGTTTTTTTTAGCTTTAATTGATATAATCATCAATATATCGTCAAAATATAGTTCAATTTTTTCCTTCTTTCCCATTTACCTTGCTTGTCAATGCAAAAATGTCCGGGTTGTATAAATTAATGTCAGTAAAATTGTGGAAAGTTGCTTTGTTTATTCTTTAGATGATCAAGATACGTTTCTGCGACTGAAATTGGTTTTGCAACTGAATAATTACTAGAGTTGAAGCTTTTATCCTTTTTCTTTTCCCGTTTTGTCCTTAGAGAGAATGTATGAACTGTTTTAAGTCGTTGTTGTTTTTTGCTTAACTGCAAGAGGTGCTTTTTTCTTGTCCTTGTGGTCAATTAACTGCAAGAGGTGCTTGTTTCTTGTTTTTGTGGACAATTGACTGCAAGTGAATGTGGTTTTGCCTTTCAGGAACAATGAGTCGGTCGAGTAGGACACTTTATGTTGGCAATCTTCCTGGTGATGTTCGTGAGCGTGAAGTGGAAGATCTCTTTTACAAG : TATGGACCGATTGCACATATTGAGCTGAAAATTCCACCAAGACCCCCTGGTTATGCTTTTGTTGAG : TTTGAAGAGGCTCGTGATGCTGAAGATGCTATTCGTGGTCGTGATGGCTATGATTTTGATGGGCACCGTCTGCGG : GTTGAGCTTGCACATGGCGGGCGTGGTAACTCATCATCAAATGATCGTTATGGTGGTGGCGGTGGCGGCCGTGGTCAGCGTGGTGGAGGAGTGTCAAGACGTTCAGATTATCGAG : TGTTAGTTACAGGATTACCCCATTCAGCATCGTGGCAGGATCTCAAG : GATCACATGCGCCGTGCTGGGGATGTTTGTTTCTCCCAAGTTTTCCGTGACGGGAGTG : GAACCACTGGTATAATTGATTATACAAACTATGATGACATGAAATATGCT : ATCAAAAAGCTTGATGACTCTGAGTTTCGAAATGCCTTTTCTCGTGCGACAATTCGA : GTTAAAGAATATGACCGCAGTCGAAGTCGCAGCCGCAGTCGCAGTCGCTCTTACTCCAGAGGGAAGAGTGTTAGTCGAAGCCGAAGCCGTAGCCGAAGTAGAAGCCGAAGCAAGAGCAAAAG : CAAATCTCCTAAAGTTAAGTCTTCAAAGCGCTCAAGATCTCGTTCAAGGTCTGTGTCTTCTCAGTCTCGTTCTGGGTCAAAAGGACGTCCTGTCTCAAG : ATTTTGGATATGTGCGGCGGTTTGTGGATTTGCATATTAGGATCTTGAGTGGATAATGGTCTTGCCTGCAACTCTTTTTGTTGTGGAG : ATTGGGATCATGAAGATCACGGATTCTATGGTGGAGCTGGACTGGGGAACCAACTGCCACCTGAATTTGGATCACCACCTATTTTTTGGTAGAAGCATGTTCTAACAAAGCGAAATAAAGACTAGTTCATTCTTTTGGTATCCTGCTAATTGGTCTCTTTGACTGCTCGAATTTAAAATATTACATAGTCTCAATGGTGTAACTTGCATTGTTTTATACTTGCCATATTTTCCACTCTGGATTCTGCCAAATTGCTACTTTCATTATGGTCATGCTGAGGTGGAAGTGAAATCAAAGCAGTTGTGGAGGAAACTTGTTAAGTGGCGGGACTGGGATATTAAATTAAGTTCTTTCTGGAAATTTTGCAGATCTCCATCAAGGTCCAGATCACCAGCACCAGCT : CGTTCAAAACAATTAAGTGAAAGTCCCAAAAGACGCACTCCCAGCAGTAGCCCCAAAAGACGCACTCCAAGCAGAAGCCCAAGCCGGAGTAGGAGCCGTAGCCAAAGTTTGTCCAG : GTAAGATTGCTGGAATCATCAGTGATTGAGGGTGCCATCATGCTGTGTTTGAGCAGCCTGGTCCACAGTTGGGAGCCCAAGTGACCGGAAGAGTCTGTTGCTCTGCTTACATCAAAATATTTCTGTGTCATTGAACCATGTCAAGACTGTAATAATTATTATACTTGTTTTTGTAGCTCTTAATCTTGGTAAAAGACTGCAATATAGTAGATGATATTGTGAAAAACGGAATTTAATTTCCTTGAATTGCAGATTATTGTTGGTCGACTGATG</gDNA_template>
            <first_frame> S  I  F  P  G  M  F  S  N  G  G  Y  V  N  R  F  F  *  L  *  L  I  *  S  S  I  Y  R  Q  N  I  V  Q  F  F  P  S  F  P  F  T  L  L  V  N  A  K  M  S  G  L  Y  K  L  M  S  V  K  L  W  K  V  A  L  F  I  L  *  M  I  K  I  R  F  C  D  *  N  W  F  C  N  *  I  I  T  R  V  E  A  F  I  L  F  L  F  P  F  C  P  *  R  E  C  M  N  C  F  K  S  L  L  F  F  A  *  L  Q  E  V  L  F  S  C  P  C  G  Q  L  T  A  R  G  A  C  F  L  F  L  W  T  I  D  C  K  *  M  W  F  C  L  S  G  T  M  S  R  S  S  R  T  L  Y  V  G  N  L  P  G  D  V  R  E  R  E  V  E  D  L  F  Y  K  :  Y  G  P  I  A  H  I  E  L  K  I  P  P  R  P  P  G  Y  A  F  V  E  :  F  E  E  A  R  D  A  E  D  A  I  R  G  R  D  G  Y  D  F  D  G  H  R  L  R  :  V  E  L  A  H  G  G  R  G  N  S  S  S  N  D  R  Y  G  G  G  G  G  G  R  G  Q  R  G  G  G  V  S  R  R  S  D  Y  R   : V  L  V  T  G  L  P  H  S  A  S  W  Q  D  L  K  :  D  H  M  R  R  A  G  D  V  C  F  S  Q  V  F  R  D  G  S   : G  T  T  G  I  I  D  Y  T  N  Y  D  D  M  K  Y  A  :  I  K  K  L  D  D  S  E  F  R  N  A  F  S  R  A  T  I  R  :  V  K  E  Y  D  R  S  R  S  R  S  R  S  R  S  R  S  Y  S  R  G  K  S  V  S  R  S  R  S  R  S  R  S  R  S  R  S  K  S  K  S :   K  S  P  K  V  K  S  S  K  R  S  R  S  R  S  R  S  V  S  S  Q  S  R  S  G  S  K  G  R  P  V  S  R :   F  W  I  C  A  A  V  C  G  F  A  Y  *  D  L  E  W  I  M  V  L  P  A  T  L  F  V  V  E  :  I  G  I  M  K  I  T  D  S  M  V  E  L  D  W  G  T  N  C  H  L  N  L  D  H  H  L  F  F  G  R  S  M  F  *  Q  S  E  I  K  T  S  S  F  F  W  Y  P  A  N  W  S  L  *  L  L  E  F  K  I  L  H  S  L  N  G  V  T  C  I  V  L  Y  L  P  Y  F  P  L  W  I  L  P  N  C  Y  F  H  Y  G  H  A  E  V  E  V  K  S  K  Q  L  W  R  K  L  V  K  W  R  D  W  D  I  K  L  S  S  F  W  K  F  C  R  S  P  S  R  S  R  S  P  A  P  A  :  R  S  K  Q  L  S  E  S  P  K  R  R  T  P  S  S  S  P  K  R  R  T  P  S  R  S  P  S  R  S  R  S  R  S  Q  S  L  S  R :   *  D  C  W  N  H  Q  *  L  R  V  P  S  C  C  V  *  A  A  W  S  T  V  G  S  P  S  D  R  K  S  L  L  L  C  L  H  Q  N  I  S  V  S  L  N  H  V  K  T  V  I  I  I  I  L  V  F  V  A  L  N  L  G  K  R  L  Q  Y  S  R  *  Y  C  E  K  R  N  L  I  S  L  N  C  R  L  L  L  V  D  *   </first_frame>
            <second_frame>  R  S  S  Q  V  C  S  L  M  E  V  T  *  I  V  F  F  S  F  N  *  Y  N  H  Q  Y  I  V  K  I  *  F  N  F  F  L  L  S  H  L  P  C  L  S  M  Q  K  C  P  G  C  I  N  *  C  Q  *  N  C  G  K  L  L  C  L  F  F  R  *  S  R  Y  V  S  A  T  E  I  G  F  A  T  E  *  L  L  E  L  K  L  L  S  F  F  F  S  R  F  V  L  R  E  N  V  *  T  V  L  S  R  C  C  F  L  L  N  C  K  R  C  F  F  L  V  L  V  V  N  *  L  Q  E  V  L  V  S  C  F  C  G  Q  L  T  A  S  E  C  G  F  A  F  Q  E  Q  *  V  G  R  V  G  H  F  M  L  A  I  F  L  V  M  F  V  S  V  K  W  K  I  S  F  T  S :   M  D  R  L  H  I  L  S  *  K  F  H  Q  D  P  L  V  M  L  L  L  S :   L  K  R  L  V  M  L  K  M  L  F  V  V  V  M  A  M  I  L  M  G  T  V  C  G :   L  S  L  H  M  A  G  V  V  T  H  H  Q  M  I  V  M  V  V  A  V  A  A  V  V  S  V  V  E  E  C  Q  D  V  Q  I  I  E  :  C  *  L  Q  D  Y  P  I  Q  H  R  G  R  I  S  R :   I  T  C  A  V  L  G  M  F  V  S  P  K  F  S  V  T  G  V  :  E  P  L  V  *  L  I  I  Q  T  M  M  T  *  N  M  L :   S  K  S  L  M  T  L  S  F  E  M  P  F  L  V  R  Q  F  E :   L  K  N  M  T  A  V  E  V  A  A  A  V  A  V  A  L  T  P  E  G  R  V  L  V  E  A  E  A  V  A  E  V  E  A  E  A  R  A  K   : A  N  L  L  K  L  S  L  Q  S  A  Q  D  L  V  Q  G  L  C  L  L  S  L  V  L  G  Q  K  D  V  L  S  Q   : D  F  G  Y  V  R  R  F  V  D  L  H  I  R  I  L  S  G  *  W  S  C  L  Q  L  F  L  L  W  R :   L  G  S  *  R  S  R  I  L  W  W  S  W  T  G  E  P  T  A  T  *  I  W  I  T  T  Y  F  L  V  E  A  C  S  N  K  A  K  *  R  L  V  H  S  F  G  I  L  L  I  G  L  F  D  C  S  N  L  K  Y  Y  I  V  S  M  V  *  L  A  L  F  Y  T  C  H  I  F  H  S  G  F  C  Q  I  A  T  F  I  M  V  M  L  R  W  K  *  N  Q  S  S  C  G  G  N  L  L  S  G  G  T  G  I  L  N  *  V  L  S  G  N  F  A  D  L  H  Q  G  P  D  H  Q  H  Q  L :   V  Q  N  N  *  V  K  V  P  K  D  A  L  P  A  V  A  P  K  D  A  L  Q  A  E  A  Q  A  G  V  G  A  V  A  K  V  C  P   : G  K  I  A  G  I  I  S  D  *  G  C  H  H  A  V  F  E  Q  P  G  P  Q  L  G  A  Q  V  T  G  R  V  C  C  S  A  Y  I  K  I  F  L  C  H  *  T  M  S  R  L  *  *  L  L  Y  L  F  L  *  L  L  I  L  V  K  D  C  N  I  V  D  D  I  V  K  N  G  I  *  F  P  *  I  A  D  Y  C  W  S  T  D  </second_frame>
            <third_frame>   D  L  P  R  Y  V  L  *  W  R  L  R  K  S  F  F  L  A  L  I  D  I  I  I  N  I  S  S  K  Y  S  S  I  F  S  F  F  P  I  Y  L  A  C  Q  C  K  N  V  R  V  V  *  I  N  V  S  K  I  V  E  S  C  F  V  Y  S  L  D  D  Q  D  T  F  L  R  L  K  L  V  L  Q  L  N  N  Y  *  S  *  S  F  Y  P  F  S  F  P  V  L  S  L  E  R  M  Y  E  L  F  *  V  V  V  V  F  C  L  T  A  R  G  A  F  F  L  S  L  W  S  I  N  C  K  R  C  L  F  L  V  F  V  D  N  *  L  Q  V  N  V  V  L  P  F  R  N  N  E  S  V  E  *  D  T  L  C  W  Q  S  S  W  *  C  S  *  A  *  S  G  R  S  L  L  Q   : V  W  T  D  C  T  Y  *  A  E  N  S  T  K  T  P  W  L  C  F  C  *   : V  *  R  G  S  *  C  *  R  C  Y  S  W  S  *  W  L  *  F  *  W  A  P  S  A   : G  *  A  C  T  W  R  A  W  *  L  I  I  K  *  S  L  W  W  W  R  W  R  P  W  S  A  W  W  R  S  V  K  T  F  R  L  S  S :   V  S  Y  R  I  T  P  F  S  I  V  A  G  S  Q   : G  S  H  A  P  C  W  G  C  L  F  L  P  S  F  P  *  R  E  W :   N  H  W  Y  N  *  L  Y  K  L  *  *  H  E  I  C   : Y  Q  K  A  *  *  L  *  V  S  K  C  L  F  S  C  D  N  S   : S  *  R  I  *  P  Q  S  K  S  Q  P  Q  S  Q  S  L  L  L  Q  R  E  E  C  *  S  K  P  K  P  *  P  K  *  K  P  K  Q  E  Q  K  :  Q  I  S  *  S  *  V  F  K  A  L  K  I  S  F  K  V  C  V  F  S  V  S  F  W  V  K  R  T  S  C  L  K  :  I  L  D  M  C  G  G  L  W  I  C  I  L  G  S  *  V  D  N  G  L  A  C  N  S  F  C  C  G   : D  W  D  H  E  D  H  G  F  Y  G  G  A  G  L  G  N  Q  L  P  P  E  F  G  S  P  P  I  F  W  *  K  H  V  L  T  K  R  N  K  D  *  F  I  L  L  V  S  C  *  L  V  S  L  T  A  R  I  *  N  I  T  *  S  Q  W  C  N  L  H  C  F  I  L  A  I  F  S  T  L  D  S  A  K  L  L  L  S  L  W  S  C  *  G  G  S  E  I  K  A  V  V  E  E  T  C  *  V  A  G  L  G  Y  *  I  K  F  F  L  E  I  L  Q  I  S  I  K  V  Q  I  T  S  T  S   : S  F  K  T  I  K  *  K  S  Q  K  T  H  S  Q  Q  *  P  Q  K  T  H  S  K  Q  K  P  K  P  E  *  E  P  *  P  K  F  V  Q  :  V  R  L  L  E  S  S  V  I  E  G  A  I  M  L  C  L  S  S  L  V  H  S  W  E  P  K  *  P  E  E  S  V  A  L  L  T  S  K  Y  F  C  V  I  E  P  C  Q  D  C  N  N  Y  Y  T  C  F  C  S  S  *  S  W  *  K  T  A  I  *  *  M  I  L  *  K  T  E  F  N  F  L  E  L  Q  I  I  V  G  R  L  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0038L16.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68170" stop="68063"/>
                    <exon start="67795" stop="67730"/>
                    <exon start="67627" stop="67553"/>
                    <exon start="67457" stop="67343"/>
                    <exon start="67257" stop="67211"/>
                    <exon start="67095" stop="67038"/>
                    <exon start="65268" stop="65219"/>
                    <exon start="65091" stop="65035"/>
                    <exon start="64951" stop="64830"/>
                    <exon start="64747" stop="64649"/>
                    <exon start="63617" stop="63578"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>834</number_coding_nucleotides>
                  <number_encoded_amino_acids>278</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MWFCLSGTMSRSSRTLYVGNLPGDVREREVEDLFYKYGPIAHIELKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGRGNSSSNDRYGGGGGGRGQRGGGVSRRSDYRVLVTGLPHSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIIDYTNYDDMKYAIKKLDDSEFRNAFSRATIRVKEYDRSRSRSRSRSRSYSRGKSVSRSRSRSRSRSRSKSKSKSPKVKSSKRSRSRSRSVSSQSRSGSKGRPVSRFWICAAVCGFAY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0038L16.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63281" stop="63042"/>
                    <exon start="62868" stop="62753"/>
                    <exon start="62673" stop="62670"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>357</number_coding_nucleotides>
                  <number_encoded_amino_acids>119</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLEFKILHSLNGVTCIVLYLPYFPLWILPNCYFHYGHAEVEVKSKQLWRKLVKWRDWDIKLSSFWKFCRSPSRSRSPAPARSKQLSESPKRRTPSSSPKRRTPSRSPSRSRSRSQSLSR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="68637" e_stop="68596"/>
            <exon e_start="68151" e_stop="68063"/>
            <exon e_start="67795" e_stop="67730"/>
            <exon e_start="67627" e_stop="67553"/>
            <exon e_start="67457" e_stop="67343"/>
            <exon e_start="67257" e_stop="67211"/>
            <exon e_start="67095" e_stop="67038"/>
            <exon e_start="65268" e_stop="65219"/>
            <exon e_start="65091" e_stop="65035"/>
            <exon e_start="64951" e_stop="64830"/>
            <exon e_start="64747" e_stop="64649"/>
            <exon e_start="63617" e_stop="63530"/>
            <exon e_start="63443" e_stop="63042"/>
            <exon e_start="62868" e_stop="62753"/>
            <exon e_start="62673" e_stop="62401"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.611" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.732" acc_prob="0.949" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.791" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.433" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.846" e_score="1.000"/>
          <exon-intron don_prob="0.956" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.906" acc_prob="0.964" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="68637" e_stop="68596" e_length="42"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="68595" i_stop="68152" i_length="444"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="68151" e_stop="68063" e_length="89"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="68062" i_stop="67796" i_length="267"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="67795" e_stop="67730" e_length="66"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.979">
            <gDNA_intron_boundary i_start="67729" i_stop="67628" i_length="102"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="67627" e_stop="67553" e_length="75"/>
          </exon>
          <intron i_serial="4" don_prob="0.964" acc_prob="0.990">
            <gDNA_intron_boundary i_start="67552" i_stop="67458" i_length="95"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="67457" e_stop="67343" e_length="115"/>
          </exon>
          <intron i_serial="5" don_prob="0.982" acc_prob="0.999">
            <gDNA_intron_boundary i_start="67342" i_stop="67258" i_length="85"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="67257" e_stop="67211" e_length="47"/>
          </exon>
          <intron i_serial="6" don_prob="0.611" acc_prob="0.999">
            <gDNA_intron_boundary i_start="67210" i_stop="67096" i_length="115"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="67095" e_stop="67038" e_length="58"/>
          </exon>
          <intron i_serial="7" don_prob="0.732" acc_prob="0.949">
            <gDNA_intron_boundary i_start="67037" i_stop="65269" i_length="1769"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="65268" e_stop="65219" e_length="50"/>
          </exon>
          <intron i_serial="8" don_prob="0.995" acc_prob="0.963">
            <gDNA_intron_boundary i_start="65218" i_stop="65092" i_length="127"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="65091" e_stop="65035" e_length="57"/>
          </exon>
          <intron i_serial="9" don_prob="0.978" acc_prob="0.791">
            <gDNA_intron_boundary i_start="65034" i_stop="64952" i_length="83"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="64951" e_stop="64830" e_length="122"/>
          </exon>
          <intron i_serial="10" don_prob="0.982" acc_prob="0.433">
            <gDNA_intron_boundary i_start="64829" i_stop="64748" i_length="82"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="64747" e_stop="64649" e_length="99"/>
          </exon>
          <intron i_serial="11" don_prob="0.999" acc_prob="0.846">
            <gDNA_intron_boundary i_start="64648" i_stop="63618" i_length="1031"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="63617" e_stop="63530" e_length="88"/>
          </exon>
          <intron i_serial="12" don_prob="0.956" acc_prob="0.965">
            <gDNA_intron_boundary i_start="63529" i_stop="63444" i_length="86"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="63443" e_stop="63042" e_length="402"/>
          </exon>
          <intron i_serial="13" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="63041" i_stop="62869" i_length="173"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="62868" e_stop="62753" e_length="116"/>
          </exon>
          <intron i_serial="14" don_prob="0.906" acc_prob="0.964">
            <gDNA_intron_boundary i_start="62752" i_stop="62674" i_length="79"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="62673" e_stop="62401" e_length="273"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68637" stop="68596"/>
              <exon start="68151" stop="68063"/>
              <exon start="67795" stop="67730"/>
              <exon start="67627" stop="67553"/>
              <exon start="67457" stop="67356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313109" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68151" stop="68063"/>
              <exon start="67795" stop="67730"/>
              <exon start="67627" stop="67553"/>
              <exon start="67457" stop="67343"/>
              <exon start="67257" stop="67211"/>
              <exon start="67095" stop="67038"/>
              <exon start="65268" stop="65219"/>
              <exon start="65091" stop="65035"/>
              <exon start="64951" stop="64830"/>
              <exon start="64747" stop="64649"/>
              <exon start="63617" stop="63530"/>
              <exon start="63443" stop="63042"/>
              <exon start="62868" stop="62753"/>
              <exon start="62673" stop="62412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746296" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68151" stop="68063"/>
              <exon start="67795" stop="67730"/>
              <exon start="67627" stop="67553"/>
              <exon start="67457" stop="67343"/>
              <exon start="67257" stop="67211"/>
              <exon start="67095" stop="67038"/>
              <exon start="65268" stop="65219"/>
              <exon start="65091" stop="65035"/>
              <exon start="64951" stop="64929"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288997" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68151" stop="68063"/>
              <exon start="67795" stop="67730"/>
              <exon start="67627" stop="67553"/>
              <exon start="67457" stop="67343"/>
              <exon start="67257" stop="67211"/>
              <exon start="67095" stop="67038"/>
              <exon start="65268" stop="65219"/>
              <exon start="65091" stop="65044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315505" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68151" stop="68063"/>
              <exon start="67795" stop="67730"/>
              <exon start="67627" stop="67553"/>
              <exon start="67457" stop="67343"/>
              <exon start="67257" stop="67211"/>
              <exon start="67095" stop="67038"/>
              <exon start="65268" stop="65219"/>
              <exon start="65091" stop="65044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270766" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68151" stop="68063"/>
              <exon start="67795" stop="67730"/>
              <exon start="67627" stop="67553"/>
              <exon start="67457" stop="67343"/>
              <exon start="67257" stop="67211"/>
              <exon start="67095" stop="67038"/>
              <exon start="65268" stop="65219"/>
              <exon start="65091" stop="65047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273178" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68151" stop="68063"/>
              <exon start="67795" stop="67730"/>
              <exon start="67627" stop="67553"/>
              <exon start="67457" stop="67343"/>
              <exon start="67257" stop="67211"/>
              <exon start="67095" stop="67038"/>
              <exon start="65268" stop="65219"/>
              <exon start="65091" stop="65066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303833" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68151" stop="68063"/>
              <exon start="67795" stop="67730"/>
              <exon start="67627" stop="67553"/>
              <exon start="67457" stop="67391"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277755" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68145" stop="68063"/>
              <exon start="67795" stop="67730"/>
              <exon start="67627" stop="67553"/>
              <exon start="67457" stop="67343"/>
              <exon start="67257" stop="67211"/>
              <exon start="67095" stop="67038"/>
              <exon start="65268" stop="65219"/>
              <exon start="65091" stop="65035"/>
              <exon start="64951" stop="64896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68145" stop="68063"/>
              <exon start="67795" stop="67730"/>
              <exon start="67627" stop="67553"/>
              <exon start="67457" stop="67343"/>
              <exon start="67257" stop="67211"/>
              <exon start="67095" stop="67038"/>
              <exon start="65268" stop="65219"/>
              <exon start="65091" stop="65070"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338532" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68130" stop="68063"/>
              <exon start="67795" stop="67730"/>
              <exon start="67627" stop="67553"/>
              <exon start="67457" stop="67343"/>
              <exon start="67257" stop="67211"/>
              <exon start="67095" stop="67038"/>
              <exon start="65268" stop="65219"/>
              <exon start="65091" stop="65035"/>
              <exon start="64951" stop="64830"/>
              <exon start="64747" stop="64708"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730037" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68073" stop="68063"/>
              <exon start="67795" stop="67730"/>
              <exon start="67627" stop="67553"/>
              <exon start="67457" stop="67343"/>
              <exon start="67257" stop="67211"/>
              <exon start="67095" stop="67038"/>
              <exon start="65268" stop="65219"/>
              <exon start="65091" stop="65072"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728830" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68069" stop="68063"/>
              <exon start="67795" stop="67730"/>
              <exon start="67627" stop="67553"/>
              <exon start="67457" stop="67343"/>
              <exon start="67257" stop="67247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311338" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67768" stop="67730"/>
              <exon start="67627" stop="67553"/>
              <exon start="67457" stop="67343"/>
              <exon start="67257" stop="67211"/>
              <exon start="67095" stop="67038"/>
              <exon start="65268" stop="65219"/>
              <exon start="65091" stop="65035"/>
              <exon start="64951" stop="64830"/>
              <exon start="64747" stop="64715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253820" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67768" stop="67730"/>
              <exon start="67627" stop="67553"/>
              <exon start="67457" stop="67343"/>
              <exon start="67257" stop="67211"/>
              <exon start="67095" stop="67038"/>
              <exon start="65268" stop="65219"/>
              <exon start="65091" stop="65035"/>
              <exon start="64951" stop="64898"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256458" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67767" stop="67730"/>
              <exon start="67627" stop="67553"/>
              <exon start="67457" stop="67343"/>
              <exon start="67257" stop="67211"/>
              <exon start="67095" stop="67038"/>
              <exon start="65268" stop="65219"/>
              <exon start="65091" stop="65035"/>
              <exon start="64951" stop="64830"/>
              <exon start="64747" stop="64649"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709677" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63573" stop="63530"/>
              <exon start="63443" stop="63042"/>
              <exon start="62868" stop="62753"/>
              <exon start="62673" stop="62517"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63573" stop="63530"/>
              <exon start="63443" stop="63042"/>
              <exon start="62868" stop="62753"/>
              <exon start="62673" stop="62619"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233163" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63573" stop="63530"/>
              <exon start="63443" stop="63042"/>
              <exon start="62868" stop="62785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233047" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63409" stop="63042"/>
              <exon start="62868" stop="62829"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251044" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63363" stop="63042"/>
              <exon start="62868" stop="62753"/>
              <exon start="62673" stop="62401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377976" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63290" stop="63042"/>
              <exon start="62868" stop="62753"/>
              <exon start="62673" stop="62532"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252564" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62858" stop="62753"/>
              <exon start="62673" stop="62422"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217961" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62836" stop="62753"/>
              <exon start="62673" stop="62401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351570" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62836" stop="62753"/>
              <exon start="62673" stop="62401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352650" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62836" stop="62753"/>
              <exon start="62673" stop="62401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354954" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62823" stop="62753"/>
              <exon start="62673" stop="62422"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218181" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62822" stop="62753"/>
              <exon start="62673" stop="62401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221335" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATTTCCTCTTCTTCTACGCTTTCTGCTCTCGATCTTCCCAG : GAACAATGAGTCGGTCGAGTAGGACACTTTATGTTGGCAATCTTCCTGGTGATGTTCGTGAGCGTGAAGTGGAAGATCTCTTTTACAAG : TATGGACCGATTGCACATATTGAGCTGAAAATTCCACCAAGACCCCCTGGTTATGCTTTTGTTGAG : TTTGAAGAGGCTCGTGATGCTGAAGATGCTATTCGTGGTCGTGATGGCTATGATTTTGATGGGCACCGTCTGCGG : GTTGAGCTTGCACATGGCGGGCGTGGTAACTCATCATCAAATGATCGTTATGGTGGTGGCGGTGGCGGCCGTGGTCAGCGTGGTGGAGGAGTGTCAAGACGTTCAGATTATCGAG : TGTTAGTTACAGGATTACCCCATTCAGCATCGTGGCAGGATCTCAAG : GATCACATGCGCCGTGCTGGGGATGTTTGTTTCTCCCAAGTTTTCCGTGACGGGAGTG : GAACCACTGGTATAATTGATTATACAAACTATGATGACATGAAATATGCT : ATCAAAAAGCTTGATGACTCTGAGTTTCGAAATGCCTTTTCTCGTGCGACAATTCGA : GTTAAAGAATATGACCGCAGTCGAAGTCGCAGCCGCAGTCGCAGTCGCTCTTACTCCAGAGGGAAGAGTGTTAGTCGAAGCCGAAGCCGTAGCCGAAGTAGAAGCCGAAGCAAGAGCAAAAG : CAAATCTCCTAAAGTTAAGTCTTCAAAGCGCTCAAGATCTCGTTCAAGGTCTGTGTCTTCTCAGTCTCGTTCTGGGTCAAAAGGACGTCCTGTCTCAAG : ATTTTGGATATGTGCGGCGGTTTGTGGATTTGCATATTAGGATCTTGAGTGGATAATGGTCTTGCCTGCAACTCTTTTTGTTGTGGAG : ATTGGGATCATGAAGATCACGGATTCTATGGTGGAGCTGGACTGGGGAACCAACTGCCACCTGAATTTGGATCACCACCTATTTTTTGGTAGAAGCATGTTCTAACAAAGCGAAATAAAGACTAGTTCATTCTTTTGGTATCCTGCTAATTGGTCTCTTTGACTGCTCGAATTTAAAATATTACATAGTCTCAATGGTGTAACTTGCATTGTTTTATACTTGCCATATTTTCCACTCTGGATTCTGCCAAATTGCTACTTTCATTATGGTCATGCTGAGGTGGAAGTGAAATCAAAGCAGTTGTGGAGGAAACTTGTTAAGTGGCGGGACTGGGATATTAAATTAAGTTCTTTCTGGAAATTTTGCAGATCTCCATCAAGGTCCAGATCACCAGCACCAGCT : CGTTCAAAACAATTAAGTGAAAGTCCCAAAAGACGCACTCCCAGCAGTAGCCCCAAAAGACGCACTCCAAGCAGAAGCCCAAGCCGGAGTAGGAGCCGTAGCCAAAGTTTGTCCAG : GTAAGATTGCTGGAATCATCAGTGATTGAGGGTGCCATCATGCTGTGTTTGAGCAGCCTGGTCCACAGTTGGGAGCCCAAGTGACCGGAAGAGTCTGTTGCTCTGCTTACATCAAAATATTTCTGTGTCATTGAACCATGTCAAGACTGTAATAATTATTATACTTGTTTTTGTAGCTCTTAATCTTGGTAAAAGACTGCAATATAGTAGATGATATTGTGAAAAACGGAATTTAATTTCCTTGAATTGCAGATTATTGTTGGTCGACTGATG</gDNA_template>
            <first_frame> N  F  L  F  F  Y  A  F  C  S  R  S  S  Q  :  E  Q  *  V  G  R  V  G  H  F  M  L  A  I  F  L  V  M  F  V  S  V  K  W  K  I  S  F  T  S :   M  D  R  L  H  I  L  S  *  K  F  H  Q  D  P  L  V  M  L  L  L  S :   L  K  R  L  V  M  L  K  M  L  F  V  V  V  M  A  M  I  L  M  G  T  V  C  G :   L  S  L  H  M  A  G  V  V  T  H  H  Q  M  I  V  M  V  V  A  V  A  A  V  V  S  V  V  E  E  C  Q  D  V  Q  I  I  E  :  C  *  L  Q  D  Y  P  I  Q  H  R  G  R  I  S  R :   I  T  C  A  V  L  G  M  F  V  S  P  K  F  S  V  T  G  V  :  E  P  L  V  *  L  I  I  Q  T  M  M  T  *  N  M  L :   S  K  S  L  M  T  L  S  F  E  M  P  F  L  V  R  Q  F  E :   L  K  N  M  T  A  V  E  V  A  A  A  V  A  V  A  L  T  P  E  G  R  V  L  V  E  A  E  A  V  A  E  V  E  A  E  A  R  A  K   : A  N  L  L  K  L  S  L  Q  S  A  Q  D  L  V  Q  G  L  C  L  L  S  L  V  L  G  Q  K  D  V  L  S  Q   : D  F  G  Y  V  R  R  F  V  D  L  H  I  R  I  L  S  G  *  W  S  C  L  Q  L  F  L  L  W  R :   L  G  S  *  R  S  R  I  L  W  W  S  W  T  G  E  P  T  A  T  *  I  W  I  T  T  Y  F  L  V  E  A  C  S  N  K  A  K  *  R  L  V  H  S  F  G  I  L  L  I  G  L  F  D  C  S  N  L  K  Y  Y  I  V  S  M  V  *  L  A  L  F  Y  T  C  H  I  F  H  S  G  F  C  Q  I  A  T  F  I  M  V  M  L  R  W  K  *  N  Q  S  S  C  G  G  N  L  L  S  G  G  T  G  I  L  N  *  V  L  S  G  N  F  A  D  L  H  Q  G  P  D  H  Q  H  Q  L :   V  Q  N  N  *  V  K  V  P  K  D  A  L  P  A  V  A  P  K  D  A  L  Q  A  E  A  Q  A  G  V  G  A  V  A  K  V  C  P   : G  K  I  A  G  I  I  S  D  *  G  C  H  H  A  V  F  E  Q  P  G  P  Q  L  G  A  Q  V  T  G  R  V  C  C  S  A  Y  I  K  I  F  L  C  H  *  T  M  S  R  L  *  *  L  L  Y  L  F  L  *  L  L  I  L  V  K  D  C  N  I  V  D  D  I  V  K  N  G  I  *  F  P  *  I  A  D  Y  C  W  S  T  D  </first_frame>
            <second_frame>  I  S  S  S  S  T  L  S  A  L  D  L  P  R :   N  N  E  S  V  E  *  D  T  L  C  W  Q  S  S  W  *  C  S  *  A  *  S  G  R  S  L  L  Q   : V  W  T  D  C  T  Y  *  A  E  N  S  T  K  T  P  W  L  C  F  C  *   : V  *  R  G  S  *  C  *  R  C  Y  S  W  S  *  W  L  *  F  *  W  A  P  S  A   : G  *  A  C  T  W  R  A  W  *  L  I  I  K  *  S  L  W  W  W  R  W  R  P  W  S  A  W  W  R  S  V  K  T  F  R  L  S  S :   V  S  Y  R  I  T  P  F  S  I  V  A  G  S  Q   : G  S  H  A  P  C  W  G  C  L  F  L  P  S  F  P  *  R  E  W :   N  H  W  Y  N  *  L  Y  K  L  *  *  H  E  I  C   : Y  Q  K  A  *  *  L  *  V  S  K  C  L  F  S  C  D  N  S   : S  *  R  I  *  P  Q  S  K  S  Q  P  Q  S  Q  S  L  L  L  Q  R  E  E  C  *  S  K  P  K  P  *  P  K  *  K  P  K  Q  E  Q  K  :  Q  I  S  *  S  *  V  F  K  A  L  K  I  S  F  K  V  C  V  F  S  V  S  F  W  V  K  R  T  S  C  L  K  :  I  L  D  M  C  G  G  L  W  I  C  I  L  G  S  *  V  D  N  G  L  A  C  N  S  F  C  C  G   : D  W  D  H  E  D  H  G  F  Y  G  G  A  G  L  G  N  Q  L  P  P  E  F  G  S  P  P  I  F  W  *  K  H  V  L  T  K  R  N  K  D  *  F  I  L  L  V  S  C  *  L  V  S  L  T  A  R  I  *  N  I  T  *  S  Q  W  C  N  L  H  C  F  I  L  A  I  F  S  T  L  D  S  A  K  L  L  L  S  L  W  S  C  *  G  G  S  E  I  K  A  V  V  E  E  T  C  *  V  A  G  L  G  Y  *  I  K  F  F  L  E  I  L  Q  I  S  I  K  V  Q  I  T  S  T  S   : S  F  K  T  I  K  *  K  S  Q  K  T  H  S  Q  Q  *  P  Q  K  T  H  S  K  Q  K  P  K  P  E  *  E  P  *  P  K  F  V  Q  :  V  R  L  L  E  S  S  V  I  E  G  A  I  M  L  C  L  S  S  L  V  H  S  W  E  P  K  *  P  E  E  S  V  A  L  L  T  S  K  Y  F  C  V  I  E  P  C  Q  D  C  N  N  Y  Y  T  C  F  C  S  S  *  S  W  *  K  T  A  I  *  *  M  I  L  *  K  T  E  F  N  F  L  E  L  Q  I  I  V  G  R  L  M </second_frame>
            <third_frame>   F  P  L  L  L  R  F  L  L  S  I  F  P   : G  T  M  S  R  S  S  R  T  L  Y  V  G  N  L  P  G  D  V  R  E  R  E  V  E  D  L  F  Y  K  :  Y  G  P  I  A  H  I  E  L  K  I  P  P  R  P  P  G  Y  A  F  V  E  :  F  E  E  A  R  D  A  E  D  A  I  R  G  R  D  G  Y  D  F  D  G  H  R  L  R  :  V  E  L  A  H  G  G  R  G  N  S  S  S  N  D  R  Y  G  G  G  G  G  G  R  G  Q  R  G  G  G  V  S  R  R  S  D  Y  R   : V  L  V  T  G  L  P  H  S  A  S  W  Q  D  L  K  :  D  H  M  R  R  A  G  D  V  C  F  S  Q  V  F  R  D  G  S   : G  T  T  G  I  I  D  Y  T  N  Y  D  D  M  K  Y  A  :  I  K  K  L  D  D  S  E  F  R  N  A  F  S  R  A  T  I  R  :  V  K  E  Y  D  R  S  R  S  R  S  R  S  R  S  R  S  Y  S  R  G  K  S  V  S  R  S  R  S  R  S  R  S  R  S  R  S  K  S  K  S :   K  S  P  K  V  K  S  S  K  R  S  R  S  R  S  R  S  V  S  S  Q  S  R  S  G  S  K  G  R  P  V  S  R :   F  W  I  C  A  A  V  C  G  F  A  Y  *  D  L  E  W  I  M  V  L  P  A  T  L  F  V  V  E  :  I  G  I  M  K  I  T  D  S  M  V  E  L  D  W  G  T  N  C  H  L  N  L  D  H  H  L  F  F  G  R  S  M  F  *  Q  S  E  I  K  T  S  S  F  F  W  Y  P  A  N  W  S  L  *  L  L  E  F  K  I  L  H  S  L  N  G  V  T  C  I  V  L  Y  L  P  Y  F  P  L  W  I  L  P  N  C  Y  F  H  Y  G  H  A  E  V  E  V  K  S  K  Q  L  W  R  K  L  V  K  W  R  D  W  D  I  K  L  S  S  F  W  K  F  C  R  S  P  S  R  S  R  S  P  A  P  A  :  R  S  K  Q  L  S  E  S  P  K  R  R  T  P  S  S  S  P  K  R  R  T  P  S  R  S  P  S  R  S  R  S  R  S  Q  S  L  S  R :   *  D  C  W  N  H  Q  *  L  R  V  P  S  C  C  V  *  A  A  W  S  T  V  G  S  P  S  D  R  K  S  L  L  L  C  L  H  Q  N  I  S  V  S  L  N  H  V  K  T  V  I  I  I  I  L  V  F  V  A  L  N  L  G  K  R  L  Q  Y  S  R  *  Y  C  E  K  R  N  L  I  S  L  N  C  R  L  L  L  V  D  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0038L16.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68635" stop="68596"/>
                    <exon start="68151" stop="68063"/>
                    <exon start="67795" stop="67730"/>
                    <exon start="67627" stop="67553"/>
                    <exon start="67457" stop="67343"/>
                    <exon start="67257" stop="67211"/>
                    <exon start="67095" stop="67038"/>
                    <exon start="65268" stop="65219"/>
                    <exon start="65091" stop="65035"/>
                    <exon start="64951" stop="64830"/>
                    <exon start="64747" stop="64649"/>
                    <exon start="63617" stop="63578"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>855</number_coding_nucleotides>
                  <number_encoded_amino_acids>285</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FPLLLRFLLSIFPGTMSRSSRTLYVGNLPGDVREREVEDLFYKYGPIAHIELKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGRGNSSSNDRYGGGGGGRGQRGGGVSRRSDYRVLVTGLPHSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIIDYTNYDDMKYAIKKLDDSEFRNAFSRATIRVKEYDRSRSRSRSRSRSYSRGKSVSRSRSRSRSRSRSKSKSKSPKVKSSKRSRSRSRSVSSQSRSGSKGRPVSRFWICAAVCGFAY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0038L16.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63281" stop="63042"/>
                    <exon start="62868" stop="62753"/>
                    <exon start="62673" stop="62670"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>357</number_coding_nucleotides>
                  <number_encoded_amino_acids>119</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLEFKILHSLNGVTCIVLYLPYFPLWILPNCYFHYGHAEVEVKSKQLWRKLVKWRDWDIKLSSFWKFCRSPSRSRSPAPARSKQLSESPKRRTPSSSPKRRTPSRSPSRSRSRSQSLSR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="68646" e_stop="68596"/>
            <exon e_start="68151" e_stop="68063"/>
            <exon e_start="67795" e_stop="67730"/>
            <exon e_start="67627" e_stop="67553"/>
            <exon e_start="67457" e_stop="67343"/>
            <exon e_start="67257" e_stop="67211"/>
            <exon e_start="67095" e_stop="67038"/>
            <exon e_start="65268" e_stop="65219"/>
            <exon e_start="65091" e_stop="65035"/>
            <exon e_start="64951" e_stop="64830"/>
            <exon e_start="64747" e_stop="64649"/>
            <exon e_start="63075" e_stop="63042"/>
            <exon e_start="62868" e_stop="62753"/>
            <exon e_start="62673" e_stop="62401"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.611" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.732" acc_prob="0.949" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.791" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.433" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.906" acc_prob="0.964" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="68646" e_stop="68596" e_length="51"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="68595" i_stop="68152" i_length="444"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="68151" e_stop="68063" e_length="89"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="68062" i_stop="67796" i_length="267"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="67795" e_stop="67730" e_length="66"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.979">
            <gDNA_intron_boundary i_start="67729" i_stop="67628" i_length="102"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="67627" e_stop="67553" e_length="75"/>
          </exon>
          <intron i_serial="4" don_prob="0.964" acc_prob="0.990">
            <gDNA_intron_boundary i_start="67552" i_stop="67458" i_length="95"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="67457" e_stop="67343" e_length="115"/>
          </exon>
          <intron i_serial="5" don_prob="0.982" acc_prob="0.999">
            <gDNA_intron_boundary i_start="67342" i_stop="67258" i_length="85"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="67257" e_stop="67211" e_length="47"/>
          </exon>
          <intron i_serial="6" don_prob="0.611" acc_prob="0.999">
            <gDNA_intron_boundary i_start="67210" i_stop="67096" i_length="115"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="67095" e_stop="67038" e_length="58"/>
          </exon>
          <intron i_serial="7" don_prob="0.732" acc_prob="0.949">
            <gDNA_intron_boundary i_start="67037" i_stop="65269" i_length="1769"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="65268" e_stop="65219" e_length="50"/>
          </exon>
          <intron i_serial="8" don_prob="0.995" acc_prob="0.963">
            <gDNA_intron_boundary i_start="65218" i_stop="65092" i_length="127"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="65091" e_stop="65035" e_length="57"/>
          </exon>
          <intron i_serial="9" don_prob="0.978" acc_prob="0.791">
            <gDNA_intron_boundary i_start="65034" i_stop="64952" i_length="83"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="64951" e_stop="64830" e_length="122"/>
          </exon>
          <intron i_serial="10" don_prob="0.982" acc_prob="0.433">
            <gDNA_intron_boundary i_start="64829" i_stop="64748" i_length="82"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="64747" e_stop="64649" e_length="99"/>
          </exon>
          <intron i_serial="11" don_prob="0.999" acc_prob="0.961">
            <gDNA_intron_boundary i_start="64648" i_stop="63076" i_length="1573"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="63075" e_stop="63042" e_length="34"/>
          </exon>
          <intron i_serial="12" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="63041" i_stop="62869" i_length="173"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="62868" e_stop="62753" e_length="116"/>
          </exon>
          <intron i_serial="13" don_prob="0.906" acc_prob="0.964">
            <gDNA_intron_boundary i_start="62752" i_stop="62674" i_length="79"/>
          </intron>
          <exon e_serial="14" e_score="0.993">
            <gDNA_exon_boundary e_start="62673" e_stop="62401" e_length="273"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68646" stop="68596"/>
              <exon start="68151" stop="68063"/>
              <exon start="67795" stop="67730"/>
              <exon start="67627" stop="67553"/>
              <exon start="67457" stop="67343"/>
              <exon start="67257" stop="67211"/>
              <exon start="67095" stop="67038"/>
              <exon start="65268" stop="65219"/>
              <exon start="65091" stop="65035"/>
              <exon start="64951" stop="64830"/>
              <exon start="64747" stop="64649"/>
              <exon start="63075" stop="63042"/>
              <exon start="62868" stop="62753"/>
              <exon start="62673" stop="62546"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746625" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68637" stop="68596"/>
              <exon start="68151" stop="68063"/>
              <exon start="67795" stop="67730"/>
              <exon start="67627" stop="67553"/>
              <exon start="67457" stop="67356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313109" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68151" stop="68063"/>
              <exon start="67795" stop="67730"/>
              <exon start="67627" stop="67553"/>
              <exon start="67457" stop="67343"/>
              <exon start="67257" stop="67211"/>
              <exon start="67095" stop="67038"/>
              <exon start="65268" stop="65219"/>
              <exon start="65091" stop="65035"/>
              <exon start="64951" stop="64830"/>
              <exon start="64747" stop="64649"/>
              <exon start="63075" stop="63060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704114" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68151" stop="68063"/>
              <exon start="67795" stop="67730"/>
              <exon start="67627" stop="67553"/>
              <exon start="67457" stop="67343"/>
              <exon start="67257" stop="67211"/>
              <exon start="67095" stop="67038"/>
              <exon start="65268" stop="65219"/>
              <exon start="65091" stop="65035"/>
              <exon start="64951" stop="64929"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288997" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68151" stop="68063"/>
              <exon start="67795" stop="67730"/>
              <exon start="67627" stop="67553"/>
              <exon start="67457" stop="67343"/>
              <exon start="67257" stop="67211"/>
              <exon start="67095" stop="67038"/>
              <exon start="65268" stop="65219"/>
              <exon start="65091" stop="65044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315505" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68151" stop="68063"/>
              <exon start="67795" stop="67730"/>
              <exon start="67627" stop="67553"/>
              <exon start="67457" stop="67343"/>
              <exon start="67257" stop="67211"/>
              <exon start="67095" stop="67038"/>
              <exon start="65268" stop="65219"/>
              <exon start="65091" stop="65044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270766" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68151" stop="68063"/>
              <exon start="67795" stop="67730"/>
              <exon start="67627" stop="67553"/>
              <exon start="67457" stop="67343"/>
              <exon start="67257" stop="67211"/>
              <exon start="67095" stop="67038"/>
              <exon start="65268" stop="65219"/>
              <exon start="65091" stop="65047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273178" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68151" stop="68063"/>
              <exon start="67795" stop="67730"/>
              <exon start="67627" stop="67553"/>
              <exon start="67457" stop="67343"/>
              <exon start="67257" stop="67211"/>
              <exon start="67095" stop="67038"/>
              <exon start="65268" stop="65219"/>
              <exon start="65091" stop="65066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303833" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68151" stop="68063"/>
              <exon start="67795" stop="67730"/>
              <exon start="67627" stop="67553"/>
              <exon start="67457" stop="67391"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277755" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68145" stop="68063"/>
              <exon start="67795" stop="67730"/>
              <exon start="67627" stop="67553"/>
              <exon start="67457" stop="67343"/>
              <exon start="67257" stop="67211"/>
              <exon start="67095" stop="67038"/>
              <exon start="65268" stop="65219"/>
              <exon start="65091" stop="65035"/>
              <exon start="64951" stop="64896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68145" stop="68063"/>
              <exon start="67795" stop="67730"/>
              <exon start="67627" stop="67553"/>
              <exon start="67457" stop="67343"/>
              <exon start="67257" stop="67211"/>
              <exon start="67095" stop="67038"/>
              <exon start="65268" stop="65219"/>
              <exon start="65091" stop="65070"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338532" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68130" stop="68063"/>
              <exon start="67795" stop="67730"/>
              <exon start="67627" stop="67553"/>
              <exon start="67457" stop="67343"/>
              <exon start="67257" stop="67211"/>
              <exon start="67095" stop="67038"/>
              <exon start="65268" stop="65219"/>
              <exon start="65091" stop="65035"/>
              <exon start="64951" stop="64830"/>
              <exon start="64747" stop="64708"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730037" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68073" stop="68063"/>
              <exon start="67795" stop="67730"/>
              <exon start="67627" stop="67553"/>
              <exon start="67457" stop="67343"/>
              <exon start="67257" stop="67211"/>
              <exon start="67095" stop="67038"/>
              <exon start="65268" stop="65219"/>
              <exon start="65091" stop="65072"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728830" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68069" stop="68063"/>
              <exon start="67795" stop="67730"/>
              <exon start="67627" stop="67553"/>
              <exon start="67457" stop="67343"/>
              <exon start="67257" stop="67247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311338" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67782" stop="67730"/>
              <exon start="67627" stop="67553"/>
              <exon start="67457" stop="67343"/>
              <exon start="67257" stop="67211"/>
              <exon start="67095" stop="67038"/>
              <exon start="65268" stop="65219"/>
              <exon start="65091" stop="65035"/>
              <exon start="64951" stop="64830"/>
              <exon start="64747" stop="64649"/>
              <exon start="63075" stop="63042"/>
              <exon start="62868" stop="62802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726353" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67768" stop="67730"/>
              <exon start="67627" stop="67553"/>
              <exon start="67457" stop="67343"/>
              <exon start="67257" stop="67211"/>
              <exon start="67095" stop="67038"/>
              <exon start="65268" stop="65219"/>
              <exon start="65091" stop="65035"/>
              <exon start="64951" stop="64830"/>
              <exon start="64747" stop="64715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253820" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67768" stop="67730"/>
              <exon start="67627" stop="67553"/>
              <exon start="67457" stop="67343"/>
              <exon start="67257" stop="67211"/>
              <exon start="67095" stop="67038"/>
              <exon start="65268" stop="65219"/>
              <exon start="65091" stop="65035"/>
              <exon start="64951" stop="64898"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256458" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67767" stop="67730"/>
              <exon start="67627" stop="67553"/>
              <exon start="67457" stop="67343"/>
              <exon start="67257" stop="67211"/>
              <exon start="67095" stop="67038"/>
              <exon start="65268" stop="65219"/>
              <exon start="65091" stop="65035"/>
              <exon start="64951" stop="64830"/>
              <exon start="64747" stop="64649"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709677" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67622" stop="67553"/>
              <exon start="67457" stop="67343"/>
              <exon start="67257" stop="67211"/>
              <exon start="67095" stop="67038"/>
              <exon start="65268" stop="65219"/>
              <exon start="65091" stop="65035"/>
              <exon start="64951" stop="64830"/>
              <exon start="64747" stop="64649"/>
              <exon start="63075" stop="63042"/>
              <exon start="62868" stop="62813"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339069" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67556" stop="67553"/>
              <exon start="67457" stop="67343"/>
              <exon start="67257" stop="67211"/>
              <exon start="67095" stop="67038"/>
              <exon start="65268" stop="65219"/>
              <exon start="65091" stop="65035"/>
              <exon start="64951" stop="64830"/>
              <exon start="64747" stop="64649"/>
              <exon start="63075" stop="63042"/>
              <exon start="62868" stop="62753"/>
              <exon start="62673" stop="62565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262412" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65245" stop="65219"/>
              <exon start="65091" stop="65035"/>
              <exon start="64951" stop="64830"/>
              <exon start="64747" stop="64649"/>
              <exon start="63075" stop="63042"/>
              <exon start="62868" stop="62772"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64881" stop="64830"/>
              <exon start="64747" stop="64649"/>
              <exon start="63075" stop="63042"/>
              <exon start="62868" stop="62753"/>
              <exon start="62673" stop="62401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346155" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62858" stop="62753"/>
              <exon start="62673" stop="62422"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217961" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62836" stop="62753"/>
              <exon start="62673" stop="62401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351570" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62836" stop="62753"/>
              <exon start="62673" stop="62401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352650" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62836" stop="62753"/>
              <exon start="62673" stop="62401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354954" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62823" stop="62753"/>
              <exon start="62673" stop="62422"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218181" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62822" stop="62753"/>
              <exon start="62673" stop="62401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221335" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATCTTCAAAATTTCCTCTTCTTCTACGCTTTCTGCTCTCGATCTTCCCAG : GAACAATGAGTCGGTCGAGTAGGACACTTTATGTTGGCAATCTTCCTGGTGATGTTCGTGAGCGTGAAGTGGAAGATCTCTTTTACAAG : TATGGACCGATTGCACATATTGAGCTGAAAATTCCACCAAGACCCCCTGGTTATGCTTTTGTTGAG : TTTGAAGAGGCTCGTGATGCTGAAGATGCTATTCGTGGTCGTGATGGCTATGATTTTGATGGGCACCGTCTGCGG : GTTGAGCTTGCACATGGCGGGCGTGGTAACTCATCATCAAATGATCGTTATGGTGGTGGCGGTGGCGGCCGTGGTCAGCGTGGTGGAGGAGTGTCAAGACGTTCAGATTATCGAG : TGTTAGTTACAGGATTACCCCATTCAGCATCGTGGCAGGATCTCAAG : GATCACATGCGCCGTGCTGGGGATGTTTGTTTCTCCCAAGTTTTCCGTGACGGGAGTG : GAACCACTGGTATAATTGATTATACAAACTATGATGACATGAAATATGCT : ATCAAAAAGCTTGATGACTCTGAGTTTCGAAATGCCTTTTCTCGTGCGACAATTCGA : GTTAAAGAATATGACCGCAGTCGAAGTCGCAGCCGCAGTCGCAGTCGCTCTTACTCCAGAGGGAAGAGTGTTAGTCGAAGCCGAAGCCGTAGCCGAAGTAGAAGCCGAAGCAAGAGCAAAAG : CAAATCTCCTAAAGTTAAGTCTTCAAAGCGCTCAAGATCTCGTTCAAGGTCTGTGTCTTCTCAGTCTCGTTCTGGGTCAAAAGGACGTCCTGTCTCAAG : ATCTCCATCAAGGTCCAGATCACCAGCACCAGCT : CGTTCAAAACAATTAAGTGAAAGTCCCAAAAGACGCACTCCCAGCAGTAGCCCCAAAAGACGCACTCCAAGCAGAAGCCCAAGCCGGAGTAGGAGCCGTAGCCAAAGTTTGTCCAG : GTAAGATTGCTGGAATCATCAGTGATTGAGGGTGCCATCATGCTGTGTTTGAGCAGCCTGGTCCACAGTTGGGAGCCCAAGTGACCGGAAGAGTCTGTTGCTCTGCTTACATCAAAATATTTCTGTGTCATTGAACCATGTCAAGACTGTAATAATTATTATACTTGTTTTTGTAGCTCTTAATCTTGGTAAAAGACTGCAATATAGTAGATGATATTGTGAAAAACGGAATTTAATTTCCTTGAATTGCAGATTATTGTTGGTCGACTGATG</gDNA_template>
            <first_frame> N  L  Q  N  F  L  F  F  Y  A  F  C  S  R  S  S  Q  :  E  Q  *  V  G  R  V  G  H  F  M  L  A  I  F  L  V  M  F  V  S  V  K  W  K  I  S  F  T  S :   M  D  R  L  H  I  L  S  *  K  F  H  Q  D  P  L  V  M  L  L  L  S :   L  K  R  L  V  M  L  K  M  L  F  V  V  V  M  A  M  I  L  M  G  T  V  C  G :   L  S  L  H  M  A  G  V  V  T  H  H  Q  M  I  V  M  V  V  A  V  A  A  V  V  S  V  V  E  E  C  Q  D  V  Q  I  I  E  :  C  *  L  Q  D  Y  P  I  Q  H  R  G  R  I  S  R :   I  T  C  A  V  L  G  M  F  V  S  P  K  F  S  V  T  G  V  :  E  P  L  V  *  L  I  I  Q  T  M  M  T  *  N  M  L :   S  K  S  L  M  T  L  S  F  E  M  P  F  L  V  R  Q  F  E :   L  K  N  M  T  A  V  E  V  A  A  A  V  A  V  A  L  T  P  E  G  R  V  L  V  E  A  E  A  V  A  E  V  E  A  E  A  R  A  K   : A  N  L  L  K  L  S  L  Q  S  A  Q  D  L  V  Q  G  L  C  L  L  S  L  V  L  G  Q  K  D  V  L  S  Q   : D  L  H  Q  G  P  D  H  Q  H  Q  L :   V  Q  N  N  *  V  K  V  P  K  D  A  L  P  A  V  A  P  K  D  A  L  Q  A  E  A  Q  A  G  V  G  A  V  A  K  V  C  P   : G  K  I  A  G  I  I  S  D  *  G  C  H  H  A  V  F  E  Q  P  G  P  Q  L  G  A  Q  V  T  G  R  V  C  C  S  A  Y  I  K  I  F  L  C  H  *  T  M  S  R  L  *  *  L  L  Y  L  F  L  *  L  L  I  L  V  K  D  C  N  I  V  D  D  I  V  K  N  G  I  *  F  P  *  I  A  D  Y  C  W  S  T  D  </first_frame>
            <second_frame>  I  F  K  I  S  S  S  S  T  L  S  A  L  D  L  P  R :   N  N  E  S  V  E  *  D  T  L  C  W  Q  S  S  W  *  C  S  *  A  *  S  G  R  S  L  L  Q   : V  W  T  D  C  T  Y  *  A  E  N  S  T  K  T  P  W  L  C  F  C  *   : V  *  R  G  S  *  C  *  R  C  Y  S  W  S  *  W  L  *  F  *  W  A  P  S  A   : G  *  A  C  T  W  R  A  W  *  L  I  I  K  *  S  L  W  W  W  R  W  R  P  W  S  A  W  W  R  S  V  K  T  F  R  L  S  S :   V  S  Y  R  I  T  P  F  S  I  V  A  G  S  Q   : G  S  H  A  P  C  W  G  C  L  F  L  P  S  F  P  *  R  E  W :   N  H  W  Y  N  *  L  Y  K  L  *  *  H  E  I  C   : Y  Q  K  A  *  *  L  *  V  S  K  C  L  F  S  C  D  N  S   : S  *  R  I  *  P  Q  S  K  S  Q  P  Q  S  Q  S  L  L  L  Q  R  E  E  C  *  S  K  P  K  P  *  P  K  *  K  P  K  Q  E  Q  K  :  Q  I  S  *  S  *  V  F  K  A  L  K  I  S  F  K  V  C  V  F  S  V  S  F  W  V  K  R  T  S  C  L  K  :  I  S  I  K  V  Q  I  T  S  T  S   : S  F  K  T  I  K  *  K  S  Q  K  T  H  S  Q  Q  *  P  Q  K  T  H  S  K  Q  K  P  K  P  E  *  E  P  *  P  K  F  V  Q  :  V  R  L  L  E  S  S  V  I  E  G  A  I  M  L  C  L  S  S  L  V  H  S  W  E  P  K  *  P  E  E  S  V  A  L  L  T  S  K  Y  F  C  V  I  E  P  C  Q  D  C  N  N  Y  Y  T  C  F  C  S  S  *  S  W  *  K  T  A  I  *  *  M  I  L  *  K  T  E  F  N  F  L  E  L  Q  I  I  V  G  R  L  M </second_frame>
            <third_frame>   S  S  K  F  P  L  L  L  R  F  L  L  S  I  F  P   : G  T  M  S  R  S  S  R  T  L  Y  V  G  N  L  P  G  D  V  R  E  R  E  V  E  D  L  F  Y  K  :  Y  G  P  I  A  H  I  E  L  K  I  P  P  R  P  P  G  Y  A  F  V  E  :  F  E  E  A  R  D  A  E  D  A  I  R  G  R  D  G  Y  D  F  D  G  H  R  L  R  :  V  E  L  A  H  G  G  R  G  N  S  S  S  N  D  R  Y  G  G  G  G  G  G  R  G  Q  R  G  G  G  V  S  R  R  S  D  Y  R   : V  L  V  T  G  L  P  H  S  A  S  W  Q  D  L  K  :  D  H  M  R  R  A  G  D  V  C  F  S  Q  V  F  R  D  G  S   : G  T  T  G  I  I  D  Y  T  N  Y  D  D  M  K  Y  A  :  I  K  K  L  D  D  S  E  F  R  N  A  F  S  R  A  T  I  R  :  V  K  E  Y  D  R  S  R  S  R  S  R  S  R  S  R  S  Y  S  R  G  K  S  V  S  R  S  R  S  R  S  R  S  R  S  R  S  K  S  K  S :   K  S  P  K  V  K  S  S  K  R  S  R  S  R  S  R  S  V  S  S  Q  S  R  S  G  S  K  G  R  P  V  S  R :   S  P  S  R  S  R  S  P  A  P  A  :  R  S  K  Q  L  S  E  S  P  K  R  R  T  P  S  S  S  P  K  R  R  T  P  S  R  S  P  S  R  S  R  S  R  S  Q  S  L  S  R :   *  D  C  W  N  H  Q  *  L  R  V  P  S  C  C  V  *  A  A  W  S  T  V  G  S  P  S  D  R  K  S  L  L  L  C  L  H  Q  N  I  S  V  S  L  N  H  V  K  T  V  I  I  I  I  L  V  F  V  A  L  N  L  G  K  R  L  Q  Y  S  R  *  Y  C  E  K  R  N  L  I  S  L  N  C  R  L  L  L  V  D  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0038L16.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68644" stop="68596"/>
                    <exon start="68151" stop="68063"/>
                    <exon start="67795" stop="67730"/>
                    <exon start="67627" stop="67553"/>
                    <exon start="67457" stop="67343"/>
                    <exon start="67257" stop="67211"/>
                    <exon start="67095" stop="67038"/>
                    <exon start="65268" stop="65219"/>
                    <exon start="65091" stop="65035"/>
                    <exon start="64951" stop="64830"/>
                    <exon start="64747" stop="64649"/>
                    <exon start="63075" stop="63042"/>
                    <exon start="62868" stop="62753"/>
                    <exon start="62673" stop="62670"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>978</number_coding_nucleotides>
                  <number_encoded_amino_acids>326</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSKFPLLLRFLLSIFPGTMSRSSRTLYVGNLPGDVREREVEDLFYKYGPIAHIELKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGRGNSSSNDRYGGGGGGRGQRGGGVSRRSDYRVLVTGLPHSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIIDYTNYDDMKYAIKKLDDSEFRNAFSRATIRVKEYDRSRSRSRSRSRSYSRGKSVSRSRSRSRSRSRSKSKSKSPKVKSSKRSRSRSRSVSSQSRSGSKGRPVSRSPSRSRSPAPARSKQLSESPKRRTPSSSPKRRTPSRSPSRSRSRSQSLSR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="68608" e_stop="68063"/>
            <exon e_start="67795" e_stop="67730"/>
            <exon e_start="67627" e_stop="67553"/>
            <exon e_start="67457" e_stop="67343"/>
            <exon e_start="67257" e_stop="67211"/>
            <exon e_start="67095" e_stop="67038"/>
            <exon e_start="65268" e_stop="65219"/>
            <exon e_start="65091" e_stop="65035"/>
            <exon e_start="64951" e_stop="64830"/>
            <exon e_start="64753" e_stop="64649"/>
            <exon e_start="63075" e_stop="63042"/>
            <exon e_start="62868" e_stop="62753"/>
            <exon e_start="62673" e_stop="62401"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.998"/>
          <exon-intron don_prob="0.994" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.611" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.732" acc_prob="0.949" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.791" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.000" e_score="0.770"/>
          <exon-intron don_prob="0.999" acc_prob="0.961" e_score="0.962"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="0.971"/>
          <exon-intron don_prob="0.906" acc_prob="0.964" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="68608" e_stop="68063" e_length="546"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="68062" i_stop="67796" i_length="267"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="67795" e_stop="67730" e_length="66"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.979">
            <gDNA_intron_boundary i_start="67729" i_stop="67628" i_length="102"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="67627" e_stop="67553" e_length="75"/>
          </exon>
          <intron i_serial="3" don_prob="0.964" acc_prob="0.990">
            <gDNA_intron_boundary i_start="67552" i_stop="67458" i_length="95"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="67457" e_stop="67343" e_length="115"/>
          </exon>
          <intron i_serial="4" don_prob="0.982" acc_prob="0.999">
            <gDNA_intron_boundary i_start="67342" i_stop="67258" i_length="85"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="67257" e_stop="67211" e_length="47"/>
          </exon>
          <intron i_serial="5" don_prob="0.611" acc_prob="0.999">
            <gDNA_intron_boundary i_start="67210" i_stop="67096" i_length="115"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="67095" e_stop="67038" e_length="58"/>
          </exon>
          <intron i_serial="6" don_prob="0.732" acc_prob="0.949">
            <gDNA_intron_boundary i_start="67037" i_stop="65269" i_length="1769"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="65268" e_stop="65219" e_length="50"/>
          </exon>
          <intron i_serial="7" don_prob="0.995" acc_prob="0.963">
            <gDNA_intron_boundary i_start="65218" i_stop="65092" i_length="127"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="65091" e_stop="65035" e_length="57"/>
          </exon>
          <intron i_serial="8" don_prob="0.978" acc_prob="0.791">
            <gDNA_intron_boundary i_start="65034" i_stop="64952" i_length="83"/>
          </intron>
          <exon e_serial="9" e_score="0.770">
            <gDNA_exon_boundary e_start="64951" e_stop="64830" e_length="122"/>
          </exon>
          <intron i_serial="9" don_prob="0.982" acc_prob="0.000">
            <gDNA_intron_boundary i_start="64829" i_stop="64754" i_length="76"/>
          </intron>
          <exon e_serial="10" e_score="0.962">
            <gDNA_exon_boundary e_start="64753" e_stop="64649" e_length="105"/>
          </exon>
          <intron i_serial="10" don_prob="0.999" acc_prob="0.961">
            <gDNA_intron_boundary i_start="64648" i_stop="63076" i_length="1573"/>
          </intron>
          <exon e_serial="11" e_score="0.971">
            <gDNA_exon_boundary e_start="63075" e_stop="63042" e_length="34"/>
          </exon>
          <intron i_serial="11" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="63041" i_stop="62869" i_length="173"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="62868" e_stop="62753" e_length="116"/>
          </exon>
          <intron i_serial="12" don_prob="0.906" acc_prob="0.964">
            <gDNA_intron_boundary i_start="62752" i_stop="62674" i_length="79"/>
          </intron>
          <exon e_serial="13" e_score="0.993">
            <gDNA_exon_boundary e_start="62673" e_stop="62401" e_length="273"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68608" stop="68063"/>
              <exon start="67795" stop="67730"/>
              <exon start="67627" stop="67605"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342653" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68157" stop="68063"/>
              <exon start="67795" stop="67730"/>
              <exon start="67627" stop="67553"/>
              <exon start="67457" stop="67343"/>
              <exon start="67257" stop="67211"/>
              <exon start="67095" stop="67038"/>
              <exon start="65268" stop="65219"/>
              <exon start="65091" stop="65035"/>
              <exon start="64951" stop="64933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271755" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68154" stop="68063"/>
              <exon start="67795" stop="67730"/>
              <exon start="67627" stop="67553"/>
              <exon start="67457" stop="67343"/>
              <exon start="67257" stop="67211"/>
              <exon start="67095" stop="67038"/>
              <exon start="65268" stop="65219"/>
              <exon start="65091" stop="65035"/>
              <exon start="64951" stop="64898"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341527" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68154" stop="68063"/>
              <exon start="67795" stop="67730"/>
              <exon start="67627" stop="67553"/>
              <exon start="67457" stop="67381"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E399744" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68152" stop="68063"/>
              <exon start="67795" stop="67730"/>
              <exon start="67627" stop="67553"/>
              <exon start="67457" stop="67343"/>
              <exon start="67257" stop="67211"/>
              <exon start="67095" stop="67038"/>
              <exon start="65268" stop="65219"/>
              <exon start="65091" stop="65042"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246019" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68151" stop="68063"/>
              <exon start="67795" stop="67730"/>
              <exon start="67627" stop="67553"/>
              <exon start="67457" stop="67343"/>
              <exon start="67257" stop="67211"/>
              <exon start="67095" stop="67038"/>
              <exon start="65268" stop="65219"/>
              <exon start="65091" stop="65035"/>
              <exon start="64951" stop="64929"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288997" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68151" stop="68063"/>
              <exon start="67795" stop="67730"/>
              <exon start="67627" stop="67553"/>
              <exon start="67457" stop="67343"/>
              <exon start="67257" stop="67211"/>
              <exon start="67095" stop="67038"/>
              <exon start="65268" stop="65219"/>
              <exon start="65091" stop="65044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315505" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68151" stop="68063"/>
              <exon start="67795" stop="67730"/>
              <exon start="67627" stop="67553"/>
              <exon start="67457" stop="67343"/>
              <exon start="67257" stop="67211"/>
              <exon start="67095" stop="67038"/>
              <exon start="65268" stop="65219"/>
              <exon start="65091" stop="65044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270766" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68151" stop="68063"/>
              <exon start="67795" stop="67730"/>
              <exon start="67627" stop="67553"/>
              <exon start="67457" stop="67343"/>
              <exon start="67257" stop="67211"/>
              <exon start="67095" stop="67038"/>
              <exon start="65268" stop="65219"/>
              <exon start="65091" stop="65047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273178" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68151" stop="68063"/>
              <exon start="67795" stop="67730"/>
              <exon start="67627" stop="67553"/>
              <exon start="67457" stop="67343"/>
              <exon start="67257" stop="67211"/>
              <exon start="67095" stop="67038"/>
              <exon start="65268" stop="65219"/>
              <exon start="65091" stop="65066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303833" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68151" stop="68063"/>
              <exon start="67795" stop="67730"/>
              <exon start="67627" stop="67553"/>
              <exon start="67457" stop="67391"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277755" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68145" stop="68063"/>
              <exon start="67795" stop="67730"/>
              <exon start="67627" stop="67553"/>
              <exon start="67457" stop="67343"/>
              <exon start="67257" stop="67211"/>
              <exon start="67095" stop="67038"/>
              <exon start="65268" stop="65219"/>
              <exon start="65091" stop="65035"/>
              <exon start="64951" stop="64896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68145" stop="68063"/>
              <exon start="67795" stop="67730"/>
              <exon start="67627" stop="67553"/>
              <exon start="67457" stop="67343"/>
              <exon start="67257" stop="67211"/>
              <exon start="67095" stop="67038"/>
              <exon start="65268" stop="65219"/>
              <exon start="65091" stop="65070"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338532" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68073" stop="68063"/>
              <exon start="67795" stop="67730"/>
              <exon start="67627" stop="67553"/>
              <exon start="67457" stop="67343"/>
              <exon start="67257" stop="67211"/>
              <exon start="67095" stop="67038"/>
              <exon start="65268" stop="65219"/>
              <exon start="65091" stop="65072"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728830" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68069" stop="68063"/>
              <exon start="67795" stop="67730"/>
              <exon start="67627" stop="67553"/>
              <exon start="67457" stop="67343"/>
              <exon start="67257" stop="67247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311338" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67768" stop="67730"/>
              <exon start="67627" stop="67553"/>
              <exon start="67457" stop="67343"/>
              <exon start="67257" stop="67211"/>
              <exon start="67095" stop="67038"/>
              <exon start="65268" stop="65219"/>
              <exon start="65091" stop="65035"/>
              <exon start="64951" stop="64898"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256458" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67406" stop="67343"/>
              <exon start="67257" stop="67211"/>
              <exon start="67095" stop="67038"/>
              <exon start="65268" stop="65219"/>
              <exon start="65091" stop="65035"/>
              <exon start="64951" stop="64830"/>
              <exon start="64753" stop="64649"/>
              <exon start="63075" stop="63042"/>
              <exon start="62868" stop="62779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E487372" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67236" stop="67211"/>
              <exon start="67095" stop="67038"/>
              <exon start="65268" stop="65219"/>
              <exon start="65091" stop="65035"/>
              <exon start="64951" stop="64830"/>
              <exon start="64753" stop="64649"/>
              <exon start="63075" stop="63042"/>
              <exon start="62868" stop="62753"/>
              <exon start="62673" stop="62465"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E613784" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62858" stop="62753"/>
              <exon start="62673" stop="62422"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217961" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62836" stop="62753"/>
              <exon start="62673" stop="62401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351570" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62836" stop="62753"/>
              <exon start="62673" stop="62401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352650" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62836" stop="62753"/>
              <exon start="62673" stop="62401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354954" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62823" stop="62753"/>
              <exon start="62673" stop="62422"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218181" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62822" stop="62753"/>
              <exon start="62673" stop="62401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221335" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCGATCTTCCCAGGTATGTTCTCTAATGGAGGTTACGTAAATCGTTTTTTTTAGCTTTAATTGATATAATCATCAATATATCGTCAAAATATAGTTCAATTTTTTCCTTCTTTCCCATTTACCTTGCTTGTCAATGCAAAAATGTCCGGGTTGTATAAATTAATGTCAGTAAAATTGTGGAAAGTTGCTTTGTTTATTCTTTAGATGATCAAGATACGTTTCTGCGACTGAAATTGGTTTTGCAACTGAATAATTACTAGAGTTGAAGCTTTTATCCTTTTTCTTTTCCCGTTTTGTCCTTAGAGAGAATGTATGAACTGTTTTAAGTCGTTGTTGTTTTTTGCTTAACTGCAAGAGGTGCTTTTTTCTTGTCCTTGTGGTCAATTAACTGCAAGAGGTGCTTGTTTCTTGTTTTTGTGGACAATTGACTGCAAGTGAATGTGGTTTTGCCTTTCAGGAACAATGAGTCGGTCGAGTAGGACACTTTATGTTGGCAATCTTCCTGGTGATGTTCGTGAGCGTGAAGTGGAAGATCTCTTTTACAAG : TATGGACCGATTGCACATATTGAGCTGAAAATTCCACCAAGACCCCCTGGTTATGCTTTTGTTGAG : TTTGAAGAGGCTCGTGATGCTGAAGATGCTATTCGTGGTCGTGATGGCTATGATTTTGATGGGCACCGTCTGCGG : GTTGAGCTTGCACATGGCGGGCGTGGTAACTCATCATCAAATGATCGTTATGGTGGTGGCGGTGGCGGCCGTGGTCAGCGTGGTGGAGGAGTGTCAAGACGTTCAGATTATCGAG : TGTTAGTTACAGGATTACCCCATTCAGCATCGTGGCAGGATCTCAAG : GATCACATGCGCCGTGCTGGGGATGTTTGTTTCTCCCAAGTTTTCCGTGACGGGAGTG : GAACCACTGGTATAATTGATTATACAAACTATGATGACATGAAATATGCT : ATCAAAAAGCTTGATGACTCTGAGTTTCGAAATGCCTTTTCTCGTGCGACAATTCGA : GTTAAAGAATATGACCGCAGTCGAAGTCGCAGCCGCAGTCGCAGTCGCTCTTACTCCAGAGGGAAGAGTGTTAGTCGAAGCCGAAGCCGTAGCCGAAGTAGAAGCCGAAGCAAGAGCAAAAG : TAGCAGCAAATCTCCTAAAGTTAAGTCTTCAAAGCGCTCAAGATCTCGTTCAAGGTCTGTGTCTTCTCAGTCTCGTTCTGGGTCAAAAGGACGTCCTGTCTCAAG : ATCTCCATCAAGGTCCAGATCACCAGCACCAGCT : CGTTCAAAACAATTAAGTGAAAGTCCCAAAAGACGCACTCCCAGCAGTAGCCCCAAAAGACGCACTCCAAGCAGAAGCCCAAGCCGGAGTAGGAGCCGTAGCCAAAGTTTGTCCAG : GTAAGATTGCTGGAATCATCAGTGATTGAGGGTGCCATCATGCTGTGTTTGAGCAGCCTGGTCCACAGTTGGGAGCCCAAGTGACCGGAAGAGTCTGTTGCTCTGCTTACATCAAAATATTTCTGTGTCATTGAACCATGTCAAGACTGTAATAATTATTATACTTGTTTTTGTAGCTCTTAATCTTGGTAAAAGACTGCAATATAGTAGATGATATTGTGAAAAACGGAATTTAATTTCCTTGAATTGCAGATTATTGTTGGTCGACTGATG</gDNA_template>
            <first_frame> S  I  F  P  G  M  F  S  N  G  G  Y  V  N  R  F  F  *  L  *  L  I  *  S  S  I  Y  R  Q  N  I  V  Q  F  F  P  S  F  P  F  T  L  L  V  N  A  K  M  S  G  L  Y  K  L  M  S  V  K  L  W  K  V  A  L  F  I  L  *  M  I  K  I  R  F  C  D  *  N  W  F  C  N  *  I  I  T  R  V  E  A  F  I  L  F  L  F  P  F  C  P  *  R  E  C  M  N  C  F  K  S  L  L  F  F  A  *  L  Q  E  V  L  F  S  C  P  C  G  Q  L  T  A  R  G  A  C  F  L  F  L  W  T  I  D  C  K  *  M  W  F  C  L  S  G  T  M  S  R  S  S  R  T  L  Y  V  G  N  L  P  G  D  V  R  E  R  E  V  E  D  L  F  Y  K  :  Y  G  P  I  A  H  I  E  L  K  I  P  P  R  P  P  G  Y  A  F  V  E  :  F  E  E  A  R  D  A  E  D  A  I  R  G  R  D  G  Y  D  F  D  G  H  R  L  R  :  V  E  L  A  H  G  G  R  G  N  S  S  S  N  D  R  Y  G  G  G  G  G  G  R  G  Q  R  G  G  G  V  S  R  R  S  D  Y  R   : V  L  V  T  G  L  P  H  S  A  S  W  Q  D  L  K  :  D  H  M  R  R  A  G  D  V  C  F  S  Q  V  F  R  D  G  S   : G  T  T  G  I  I  D  Y  T  N  Y  D  D  M  K  Y  A  :  I  K  K  L  D  D  S  E  F  R  N  A  F  S  R  A  T  I  R  :  V  K  E  Y  D  R  S  R  S  R  S  R  S  R  S  R  S  Y  S  R  G  K  S  V  S  R  S  R  S  R  S  R  S  R  S  R  S  K  S  K  S :   S  S  K  S  P  K  V  K  S  S  K  R  S  R  S  R  S  R  S  V  S  S  Q  S  R  S  G  S  K  G  R  P  V  S  R :   S  P  S  R  S  R  S  P  A  P  A  :  R  S  K  Q  L  S  E  S  P  K  R  R  T  P  S  S  S  P  K  R  R  T  P  S  R  S  P  S  R  S  R  S  R  S  Q  S  L  S  R :   *  D  C  W  N  H  Q  *  L  R  V  P  S  C  C  V  *  A  A  W  S  T  V  G  S  P  S  D  R  K  S  L  L  L  C  L  H  Q  N  I  S  V  S  L  N  H  V  K  T  V  I  I  I  I  L  V  F  V  A  L  N  L  G  K  R  L  Q  Y  S  R  *  Y  C  E  K  R  N  L  I  S  L  N  C  R  L  L  L  V  D  *   </first_frame>
            <second_frame>  R  S  S  Q  V  C  S  L  M  E  V  T  *  I  V  F  F  S  F  N  *  Y  N  H  Q  Y  I  V  K  I  *  F  N  F  F  L  L  S  H  L  P  C  L  S  M  Q  K  C  P  G  C  I  N  *  C  Q  *  N  C  G  K  L  L  C  L  F  F  R  *  S  R  Y  V  S  A  T  E  I  G  F  A  T  E  *  L  L  E  L  K  L  L  S  F  F  F  S  R  F  V  L  R  E  N  V  *  T  V  L  S  R  C  C  F  L  L  N  C  K  R  C  F  F  L  V  L  V  V  N  *  L  Q  E  V  L  V  S  C  F  C  G  Q  L  T  A  S  E  C  G  F  A  F  Q  E  Q  *  V  G  R  V  G  H  F  M  L  A  I  F  L  V  M  F  V  S  V  K  W  K  I  S  F  T  S :   M  D  R  L  H  I  L  S  *  K  F  H  Q  D  P  L  V  M  L  L  L  S :   L  K  R  L  V  M  L  K  M  L  F  V  V  V  M  A  M  I  L  M  G  T  V  C  G :   L  S  L  H  M  A  G  V  V  T  H  H  Q  M  I  V  M  V  V  A  V  A  A  V  V  S  V  V  E  E  C  Q  D  V  Q  I  I  E  :  C  *  L  Q  D  Y  P  I  Q  H  R  G  R  I  S  R :   I  T  C  A  V  L  G  M  F  V  S  P  K  F  S  V  T  G  V  :  E  P  L  V  *  L  I  I  Q  T  M  M  T  *  N  M  L :   S  K  S  L  M  T  L  S  F  E  M  P  F  L  V  R  Q  F  E :   L  K  N  M  T  A  V  E  V  A  A  A  V  A  V  A  L  T  P  E  G  R  V  L  V  E  A  E  A  V  A  E  V  E  A  E  A  R  A  K   : V  A  A  N  L  L  K  L  S  L  Q  S  A  Q  D  L  V  Q  G  L  C  L  L  S  L  V  L  G  Q  K  D  V  L  S  Q   : D  L  H  Q  G  P  D  H  Q  H  Q  L :   V  Q  N  N  *  V  K  V  P  K  D  A  L  P  A  V  A  P  K  D  A  L  Q  A  E  A  Q  A  G  V  G  A  V  A  K  V  C  P   : G  K  I  A  G  I  I  S  D  *  G  C  H  H  A  V  F  E  Q  P  G  P  Q  L  G  A  Q  V  T  G  R  V  C  C  S  A  Y  I  K  I  F  L  C  H  *  T  M  S  R  L  *  *  L  L  Y  L  F  L  *  L  L  I  L  V  K  D  C  N  I  V  D  D  I  V  K  N  G  I  *  F  P  *  I  A  D  Y  C  W  S  T  D  </second_frame>
            <third_frame>   D  L  P  R  Y  V  L  *  W  R  L  R  K  S  F  F  L  A  L  I  D  I  I  I  N  I  S  S  K  Y  S  S  I  F  S  F  F  P  I  Y  L  A  C  Q  C  K  N  V  R  V  V  *  I  N  V  S  K  I  V  E  S  C  F  V  Y  S  L  D  D  Q  D  T  F  L  R  L  K  L  V  L  Q  L  N  N  Y  *  S  *  S  F  Y  P  F  S  F  P  V  L  S  L  E  R  M  Y  E  L  F  *  V  V  V  V  F  C  L  T  A  R  G  A  F  F  L  S  L  W  S  I  N  C  K  R  C  L  F  L  V  F  V  D  N  *  L  Q  V  N  V  V  L  P  F  R  N  N  E  S  V  E  *  D  T  L  C  W  Q  S  S  W  *  C  S  *  A  *  S  G  R  S  L  L  Q   : V  W  T  D  C  T  Y  *  A  E  N  S  T  K  T  P  W  L  C  F  C  *   : V  *  R  G  S  *  C  *  R  C  Y  S  W  S  *  W  L  *  F  *  W  A  P  S  A   : G  *  A  C  T  W  R  A  W  *  L  I  I  K  *  S  L  W  W  W  R  W  R  P  W  S  A  W  W  R  S  V  K  T  F  R  L  S  S :   V  S  Y  R  I  T  P  F  S  I  V  A  G  S  Q   : G  S  H  A  P  C  W  G  C  L  F  L  P  S  F  P  *  R  E  W :   N  H  W  Y  N  *  L  Y  K  L  *  *  H  E  I  C   : Y  Q  K  A  *  *  L  *  V  S  K  C  L  F  S  C  D  N  S   : S  *  R  I  *  P  Q  S  K  S  Q  P  Q  S  Q  S  L  L  L  Q  R  E  E  C  *  S  K  P  K  P  *  P  K  *  K  P  K  Q  E  Q  K  :  *  Q  Q  I  S  *  S  *  V  F  K  A  L  K  I  S  F  K  V  C  V  F  S  V  S  F  W  V  K  R  T  S  C  L  K  :  I  S  I  K  V  Q  I  T  S  T  S   : S  F  K  T  I  K  *  K  S  Q  K  T  H  S  Q  Q  *  P  Q  K  T  H  S  K  Q  K  P  K  P  E  *  E  P  *  P  K  F  V  Q  :  V  R  L  L  E  S  S  V  I  E  G  A  I  M  L  C  L  S  S  L  V  H  S  W  E  P  K  *  P  E  E  S  V  A  L  L  T  S  K  Y  F  C  V  I  E  P  C  Q  D  C  N  N  Y  Y  T  C  F  C  S  S  *  S  W  *  K  T  A  I  *  *  M  I  L  *  K  T  E  F  N  F  L  E  L  Q  I  I  V  G  R  L  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0038L16.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68170" stop="68063"/>
                    <exon start="67795" stop="67730"/>
                    <exon start="67627" stop="67553"/>
                    <exon start="67457" stop="67343"/>
                    <exon start="67257" stop="67211"/>
                    <exon start="67095" stop="67038"/>
                    <exon start="65268" stop="65219"/>
                    <exon start="65091" stop="65035"/>
                    <exon start="64951" stop="64830"/>
                    <exon start="64753" stop="64649"/>
                    <exon start="63075" stop="63042"/>
                    <exon start="62868" stop="62753"/>
                    <exon start="62673" stop="62670"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>954</number_coding_nucleotides>
                  <number_encoded_amino_acids>318</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MWFCLSGTMSRSSRTLYVGNLPGDVREREVEDLFYKYGPIAHIELKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGRGNSSSNDRYGGGGGGRGQRGGGVSRRSDYRVLVTGLPHSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIIDYTNYDDMKYAIKKLDDSEFRNAFSRATIRVKEYDRSRSRSRSRSRSYSRGKSVSRSRSRSRSRSRSKSKSSSKSPKVKSSKRSRSRSRSVSSQSRSGSKGRPVSRSPSRSRSPAPARSKQLSESPKRRTPSSSPKRRTPSRSPSRSRSRSQSLSR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="68608" e_stop="68063"/>
            <exon e_start="67795" e_stop="67730"/>
            <exon e_start="67627" e_stop="67553"/>
            <exon e_start="67457" e_stop="67343"/>
            <exon e_start="67276" e_stop="67211"/>
            <exon e_start="67095" e_stop="67038"/>
            <exon e_start="65268" e_stop="65219"/>
            <exon e_start="65091" e_stop="65035"/>
            <exon e_start="64951" e_stop="64830"/>
            <exon e_start="64747" e_stop="64649"/>
            <exon e_start="63075" e_stop="63042"/>
            <exon e_start="62868" e_stop="62753"/>
            <exon e_start="62673" e_stop="62401"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.998"/>
          <exon-intron don_prob="0.994" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.000" e_score="0.783"/>
          <exon-intron don_prob="0.611" acc_prob="0.999" e_score="0.879"/>
          <exon-intron don_prob="0.732" acc_prob="0.949" e_score="0.966"/>
          <exon-intron don_prob="0.995" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.791" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.433" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.906" acc_prob="0.964" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="68608" e_stop="68063" e_length="546"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="68062" i_stop="67796" i_length="267"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="67795" e_stop="67730" e_length="66"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.979">
            <gDNA_intron_boundary i_start="67729" i_stop="67628" i_length="102"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="67627" e_stop="67553" e_length="75"/>
          </exon>
          <intron i_serial="3" don_prob="0.964" acc_prob="0.990">
            <gDNA_intron_boundary i_start="67552" i_stop="67458" i_length="95"/>
          </intron>
          <exon e_serial="4" e_score="0.783">
            <gDNA_exon_boundary e_start="67457" e_stop="67343" e_length="115"/>
          </exon>
          <intron i_serial="4" don_prob="0.982" acc_prob="0.000">
            <gDNA_intron_boundary i_start="67342" i_stop="67277" i_length="66"/>
          </intron>
          <exon e_serial="5" e_score="0.879">
            <gDNA_exon_boundary e_start="67276" e_stop="67211" e_length="66"/>
          </exon>
          <intron i_serial="5" don_prob="0.611" acc_prob="0.999">
            <gDNA_intron_boundary i_start="67210" i_stop="67096" i_length="115"/>
          </intron>
          <exon e_serial="6" e_score="0.966">
            <gDNA_exon_boundary e_start="67095" e_stop="67038" e_length="58"/>
          </exon>
          <intron i_serial="6" don_prob="0.732" acc_prob="0.949">
            <gDNA_intron_boundary i_start="67037" i_stop="65269" i_length="1769"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="65268" e_stop="65219" e_length="50"/>
          </exon>
          <intron i_serial="7" don_prob="0.995" acc_prob="0.963">
            <gDNA_intron_boundary i_start="65218" i_stop="65092" i_length="127"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="65091" e_stop="65035" e_length="57"/>
          </exon>
          <intron i_serial="8" don_prob="0.978" acc_prob="0.791">
            <gDNA_intron_boundary i_start="65034" i_stop="64952" i_length="83"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="64951" e_stop="64830" e_length="122"/>
          </exon>
          <intron i_serial="9" don_prob="0.982" acc_prob="0.433">
            <gDNA_intron_boundary i_start="64829" i_stop="64748" i_length="82"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="64747" e_stop="64649" e_length="99"/>
          </exon>
          <intron i_serial="10" don_prob="0.999" acc_prob="0.961">
            <gDNA_intron_boundary i_start="64648" i_stop="63076" i_length="1573"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="63075" e_stop="63042" e_length="34"/>
          </exon>
          <intron i_serial="11" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="63041" i_stop="62869" i_length="173"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="62868" e_stop="62753" e_length="116"/>
          </exon>
          <intron i_serial="12" don_prob="0.906" acc_prob="0.964">
            <gDNA_intron_boundary i_start="62752" i_stop="62674" i_length="79"/>
          </intron>
          <exon e_serial="13" e_score="0.993">
            <gDNA_exon_boundary e_start="62673" e_stop="62401" e_length="273"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68608" stop="68063"/>
              <exon start="67795" stop="67730"/>
              <exon start="67627" stop="67605"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342653" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68161" stop="68063"/>
              <exon start="67795" stop="67730"/>
              <exon start="67627" stop="67553"/>
              <exon start="67457" stop="67343"/>
              <exon start="67276" stop="67211"/>
              <exon start="67095" stop="67038"/>
              <exon start="65268" stop="65221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400179" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68154" stop="68063"/>
              <exon start="67795" stop="67730"/>
              <exon start="67627" stop="67553"/>
              <exon start="67457" stop="67381"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E399744" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68151" stop="68063"/>
              <exon start="67795" stop="67730"/>
              <exon start="67627" stop="67553"/>
              <exon start="67457" stop="67391"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277755" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65245" stop="65219"/>
              <exon start="65091" stop="65035"/>
              <exon start="64951" stop="64830"/>
              <exon start="64747" stop="64649"/>
              <exon start="63075" stop="63042"/>
              <exon start="62868" stop="62772"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64881" stop="64830"/>
              <exon start="64747" stop="64649"/>
              <exon start="63075" stop="63042"/>
              <exon start="62868" stop="62753"/>
              <exon start="62673" stop="62401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346155" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62858" stop="62753"/>
              <exon start="62673" stop="62422"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217961" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62836" stop="62753"/>
              <exon start="62673" stop="62401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351570" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62836" stop="62753"/>
              <exon start="62673" stop="62401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352650" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62836" stop="62753"/>
              <exon start="62673" stop="62401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354954" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62823" stop="62753"/>
              <exon start="62673" stop="62422"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218181" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62822" stop="62753"/>
              <exon start="62673" stop="62401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221335" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="6" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCGATCTTCCCAGGTATGTTCTCTAATGGAGGTTACGTAAATCGTTTTTTTTAGCTTTAATTGATATAATCATCAATATATCGTCAAAATATAGTTCAATTTTTTCCTTCTTTCCCATTTACCTTGCTTGTCAATGCAAAAATGTCCGGGTTGTATAAATTAATGTCAGTAAAATTGTGGAAAGTTGCTTTGTTTATTCTTTAGATGATCAAGATACGTTTCTGCGACTGAAATTGGTTTTGCAACTGAATAATTACTAGAGTTGAAGCTTTTATCCTTTTTCTTTTCCCGTTTTGTCCTTAGAGAGAATGTATGAACTGTTTTAAGTCGTTGTTGTTTTTTGCTTAACTGCAAGAGGTGCTTTTTTCTTGTCCTTGTGGTCAATTAACTGCAAGAGGTGCTTGTTTCTTGTTTTTGTGGACAATTGACTGCAAGTGAATGTGGTTTTGCCTTTCAGGAACAATGAGTCGGTCGAGTAGGACACTTTATGTTGGCAATCTTCCTGGTGATGTTCGTGAGCGTGAAGTGGAAGATCTCTTTTACAAG : TATGGACCGATTGCACATATTGAGCTGAAAATTCCACCAAGACCCCCTGGTTATGCTTTTGTTGAG : TTTGAAGAGGCTCGTGATGCTGAAGATGCTATTCGTGGTCGTGATGGCTATGATTTTGATGGGCACCGTCTGCGG : GTTGAGCTTGCACATGGCGGGCGTGGTAACTCATCATCAAATGATCGTTATGGTGGTGGCGGTGGCGGCCGTGGTCAGCGTGGTGGAGGAGTGTCAAGACGTTCAGATTATCGAG : ATCTTTTGTTGTATTTCAGTGTTAGTTACAGGATTACCCCATTCAGCATCGTGGCAGGATCTCAAG : GATCACATGCGCCGTGCTGGGGATGTTTGTTTCTCCCAAGTTTTCCGTGACGGGAGTG : GAACCACTGGTATAATTGATTATACAAACTATGATGACATGAAATATGCT : ATCAAAAAGCTTGATGACTCTGAGTTTCGAAATGCCTTTTCTCGTGCGACAATTCGA : GTTAAAGAATATGACCGCAGTCGAAGTCGCAGCCGCAGTCGCAGTCGCTCTTACTCCAGAGGGAAGAGTGTTAGTCGAAGCCGAAGCCGTAGCCGAAGTAGAAGCCGAAGCAAGAGCAAAAG : CAAATCTCCTAAAGTTAAGTCTTCAAAGCGCTCAAGATCTCGTTCAAGGTCTGTGTCTTCTCAGTCTCGTTCTGGGTCAAAAGGACGTCCTGTCTCAAG : ATCTCCATCAAGGTCCAGATCACCAGCACCAGCT : CGTTCAAAACAATTAAGTGAAAGTCCCAAAAGACGCACTCCCAGCAGTAGCCCCAAAAGACGCACTCCAAGCAGAAGCCCAAGCCGGAGTAGGAGCCGTAGCCAAAGTTTGTCCAG : GTAAGATTGCTGGAATCATCAGTGATTGAGGGTGCCATCATGCTGTGTTTGAGCAGCCTGGTCCACAGTTGGGAGCCCAAGTGACCGGAAGAGTCTGTTGCTCTGCTTACATCAAAATATTTCTGTGTCATTGAACCATGTCAAGACTGTAATAATTATTATACTTGTTTTTGTAGCTCTTAATCTTGGTAAAAGACTGCAATATAGTAGATGATATTGTGAAAAACGGAATTTAATTTCCTTGAATTGCAGATTATTGTTGGTCGACTGATG</gDNA_template>
            <first_frame> S  I  F  P  G  M  F  S  N  G  G  Y  V  N  R  F  F  *  L  *  L  I  *  S  S  I  Y  R  Q  N  I  V  Q  F  F  P  S  F  P  F  T  L  L  V  N  A  K  M  S  G  L  Y  K  L  M  S  V  K  L  W  K  V  A  L  F  I  L  *  M  I  K  I  R  F  C  D  *  N  W  F  C  N  *  I  I  T  R  V  E  A  F  I  L  F  L  F  P  F  C  P  *  R  E  C  M  N  C  F  K  S  L  L  F  F  A  *  L  Q  E  V  L  F  S  C  P  C  G  Q  L  T  A  R  G  A  C  F  L  F  L  W  T  I  D  C  K  *  M  W  F  C  L  S  G  T  M  S  R  S  S  R  T  L  Y  V  G  N  L  P  G  D  V  R  E  R  E  V  E  D  L  F  Y  K  :  Y  G  P  I  A  H  I  E  L  K  I  P  P  R  P  P  G  Y  A  F  V  E  :  F  E  E  A  R  D  A  E  D  A  I  R  G  R  D  G  Y  D  F  D  G  H  R  L  R  :  V  E  L  A  H  G  G  R  G  N  S  S  S  N  D  R  Y  G  G  G  G  G  G  R  G  Q  R  G  G  G  V  S  R  R  S  D  Y  R   : D  L  L  L  Y  F  S  V  S  Y  R  I  T  P  F  S  I  V  A  G  S  Q   : G  S  H  A  P  C  W  G  C  L  F  L  P  S  F  P  *  R  E  W :   N  H  W  Y  N  *  L  Y  K  L  *  *  H  E  I  C   : Y  Q  K  A  *  *  L  *  V  S  K  C  L  F  S  C  D  N  S   : S  *  R  I  *  P  Q  S  K  S  Q  P  Q  S  Q  S  L  L  L  Q  R  E  E  C  *  S  K  P  K  P  *  P  K  *  K  P  K  Q  E  Q  K  :  Q  I  S  *  S  *  V  F  K  A  L  K  I  S  F  K  V  C  V  F  S  V  S  F  W  V  K  R  T  S  C  L  K  :  I  S  I  K  V  Q  I  T  S  T  S   : S  F  K  T  I  K  *  K  S  Q  K  T  H  S  Q  Q  *  P  Q  K  T  H  S  K  Q  K  P  K  P  E  *  E  P  *  P  K  F  V  Q  :  V  R  L  L  E  S  S  V  I  E  G  A  I  M  L  C  L  S  S  L  V  H  S  W  E  P  K  *  P  E  E  S  V  A  L  L  T  S  K  Y  F  C  V  I  E  P  C  Q  D  C  N  N  Y  Y  T  C  F  C  S  S  *  S  W  *  K  T  A  I  *  *  M  I  L  *  K  T  E  F  N  F  L  E  L  Q  I  I  V  G  R  L  M </first_frame>
            <second_frame>  R  S  S  Q  V  C  S  L  M  E  V  T  *  I  V  F  F  S  F  N  *  Y  N  H  Q  Y  I  V  K  I  *  F  N  F  F  L  L  S  H  L  P  C  L  S  M  Q  K  C  P  G  C  I  N  *  C  Q  *  N  C  G  K  L  L  C  L  F  F  R  *  S  R  Y  V  S  A  T  E  I  G  F  A  T  E  *  L  L  E  L  K  L  L  S  F  F  F  S  R  F  V  L  R  E  N  V  *  T  V  L  S  R  C  C  F  L  L  N  C  K  R  C  F  F  L  V  L  V  V  N  *  L  Q  E  V  L  V  S  C  F  C  G  Q  L  T  A  S  E  C  G  F  A  F  Q  E  Q  *  V  G  R  V  G  H  F  M  L  A  I  F  L  V  M  F  V  S  V  K  W  K  I  S  F  T  S :   M  D  R  L  H  I  L  S  *  K  F  H  Q  D  P  L  V  M  L  L  L  S :   L  K  R  L  V  M  L  K  M  L  F  V  V  V  M  A  M  I  L  M  G  T  V  C  G :   L  S  L  H  M  A  G  V  V  T  H  H  Q  M  I  V  M  V  V  A  V  A  A  V  V  S  V  V  E  E  C  Q  D  V  Q  I  I  E  :  I  F  C  C  I  S  V  L  V  T  G  L  P  H  S  A  S  W  Q  D  L  K  :  D  H  M  R  R  A  G  D  V  C  F  S  Q  V  F  R  D  G  S   : G  T  T  G  I  I  D  Y  T  N  Y  D  D  M  K  Y  A  :  I  K  K  L  D  D  S  E  F  R  N  A  F  S  R  A  T  I  R  :  V  K  E  Y  D  R  S  R  S  R  S  R  S  R  S  R  S  Y  S  R  G  K  S  V  S  R  S  R  S  R  S  R  S  R  S  R  S  K  S  K  S :   K  S  P  K  V  K  S  S  K  R  S  R  S  R  S  R  S  V  S  S  Q  S  R  S  G  S  K  G  R  P  V  S  R :   S  P  S  R  S  R  S  P  A  P  A  :  R  S  K  Q  L  S  E  S  P  K  R  R  T  P  S  S  S  P  K  R  R  T  P  S  R  S  P  S  R  S  R  S  R  S  Q  S  L  S  R :   *  D  C  W  N  H  Q  *  L  R  V  P  S  C  C  V  *  A  A  W  S  T  V  G  S  P  S  D  R  K  S  L  L  L  C  L  H  Q  N  I  S  V  S  L  N  H  V  K  T  V  I  I  I  I  L  V  F  V  A  L  N  L  G  K  R  L  Q  Y  S  R  *  Y  C  E  K  R  N  L  I  S  L  N  C  R  L  L  L  V  D  *   </second_frame>
            <third_frame>   D  L  P  R  Y  V  L  *  W  R  L  R  K  S  F  F  L  A  L  I  D  I  I  I  N  I  S  S  K  Y  S  S  I  F  S  F  F  P  I  Y  L  A  C  Q  C  K  N  V  R  V  V  *  I  N  V  S  K  I  V  E  S  C  F  V  Y  S  L  D  D  Q  D  T  F  L  R  L  K  L  V  L  Q  L  N  N  Y  *  S  *  S  F  Y  P  F  S  F  P  V  L  S  L  E  R  M  Y  E  L  F  *  V  V  V  V  F  C  L  T  A  R  G  A  F  F  L  S  L  W  S  I  N  C  K  R  C  L  F  L  V  F  V  D  N  *  L  Q  V  N  V  V  L  P  F  R  N  N  E  S  V  E  *  D  T  L  C  W  Q  S  S  W  *  C  S  *  A  *  S  G  R  S  L  L  Q   : V  W  T  D  C  T  Y  *  A  E  N  S  T  K  T  P  W  L  C  F  C  *   : V  *  R  G  S  *  C  *  R  C  Y  S  W  S  *  W  L  *  F  *  W  A  P  S  A   : G  *  A  C  T  W  R  A  W  *  L  I  I  K  *  S  L  W  W  W  R  W  R  P  W  S  A  W  W  R  S  V  K  T  F  R  L  S  R :   S  F  V  V  F  Q  C  *  L  Q  D  Y  P  I  Q  H  R  G  R  I  S  R :   I  T  C  A  V  L  G  M  F  V  S  P  K  F  S  V  T  G  V  :  E  P  L  V  *  L  I  I  Q  T  M  M  T  *  N  M  L :   S  K  S  L  M  T  L  S  F  E  M  P  F  L  V  R  Q  F  E :   L  K  N  M  T  A  V  E  V  A  A  A  V  A  V  A  L  T  P  E  G  R  V  L  V  E  A  E  A  V  A  E  V  E  A  E  A  R  A  K   : A  N  L  L  K  L  S  L  Q  S  A  Q  D  L  V  Q  G  L  C  L  L  S  L  V  L  G  Q  K  D  V  L  S  Q   : D  L  H  Q  G  P  D  H  Q  H  Q  L :   V  Q  N  N  *  V  K  V  P  K  D  A  L  P  A  V  A  P  K  D  A  L  Q  A  E  A  Q  A  G  V  G  A  V  A  K  V  C  P   : G  K  I  A  G  I  I  S  D  *  G  C  H  H  A  V  F  E  Q  P  G  P  Q  L  G  A  Q  V  T  G  R  V  C  C  S  A  Y  I  K  I  F  L  C  H  *  T  M  S  R  L  *  *  L  L  Y  L  F  L  *  L  L  I  L  V  K  D  C  N  I  V  D  D  I  V  K  N  G  I  *  F  P  *  I  A  D  Y  C  W  S  T  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0038L16.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67767" stop="67730"/>
                    <exon start="67627" stop="67553"/>
                    <exon start="67457" stop="67343"/>
                    <exon start="67276" stop="67211"/>
                    <exon start="67095" stop="67038"/>
                    <exon start="65268" stop="65219"/>
                    <exon start="65091" stop="65035"/>
                    <exon start="64951" stop="64830"/>
                    <exon start="64747" stop="64649"/>
                    <exon start="63075" stop="63042"/>
                    <exon start="62868" stop="62753"/>
                    <exon start="62673" stop="62670"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>831</number_coding_nucleotides>
                  <number_encoded_amino_acids>277</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KFHQDPLVMLLLSLKRLVMLKMLFVVVMAMILMGTVCGLSLHMAGVVTHHQMIVMVVAVAAVVSVVEECQDVQIIEIFCCISVLVTGLPHSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIIDYTNYDDMKYAIKKLDDSEFRNAFSRATIRVKEYDRSRSRSRSRSRSYSRGKSVSRSRSRSRSRSRSKSKSKSPKVKSSKRSRSRSRSVSSQSRSGSKGRPVSRSPSRSRSPAPARSKQLSESPKRRTPSSSPKRRTPSRSPSRSRSRSQSLSR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="7">
          <exon_coordinates>
            <exon e_start="63424" e_stop="62623"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="63424" e_stop="62623" e_length="802"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63424" stop="62623"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577718" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="7" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGGATTCTATGGTGGAGCTGGACTGGGGAACCAACTGCCACCTGAATTTGGATCACCACCTATTTTTTGGTAGAAGCATGTTCTAACAAAGCGAAATAAAGACTAGTTCATTCTTTTGGTATCCTGCTAATTGGTCTCTTTGACTGCTCGAATTTAAAATATTACATAGTCTCAATGGTGTAACTTGCATTGTTTTATACTTGCCATATTTTCCACTCTGGATTCTGCCAAATTGCTACTTTCATTATGGTCATGCTGAGGTGGAAGTGAAATCAAAGCAGTTGTGGAGGAAACTTGTTAAGTGGCGGGACTGGGATATTAAATTAAGTTCTTTCTGGAAATTTTGCAGATCTCCATCAAGGTCCAGATCACCAGCACCAGCTGTAAGTCAAATCTACATGTTTTAAAGTGAACGGAATAACCCAAAATTCAAATATATTGGGATCATCCGTCTTGTCTGTCTTTTTTTTGTGCTTACCTGGCCTTTTCAAAGTACATTCTCTCTTTTCTCTGTCTACATAATTATTGCTTTGTATTATGACTGGGTTAATTACAGCGTTCAAAACAATTAAGTGAAAGTCCCAAAAGACGCACTCCCAGCAGTAGCCCCAAAAGACGCACTCCAAGCAGAAGCCCAAGCCGGAGTAGGAGCCGTAGCCAAAGTTTGTCCAGGTCTTACTTCTGTGGCTTGTCGTATATCTTTCAATGTTTGACCGTTTCGTTAATTTTTTCTCCTCGCCTCTTTTTATAGGTAAGATTGCTGGAATCATCAGTGATTGAGGGTGCCATCATGCTGTGTTTG</gDNA_template>
            <first_frame> R  I  L  W  W  S  W  T  G  E  P  T  A  T  *  I  W  I  T  T  Y  F  L  V  E  A  C  S  N  K  A  K  *  R  L  V  H  S  F  G  I  L  L  I  G  L  F  D  C  S  N  L  K  Y  Y  I  V  S  M  V  *  L  A  L  F  Y  T  C  H  I  F  H  S  G  F  C  Q  I  A  T  F  I  M  V  M  L  R  W  K  *  N  Q  S  S  C  G  G  N  L  L  S  G  G  T  G  I  L  N  *  V  L  S  G  N  F  A  D  L  H  Q  G  P  D  H  Q  H  Q  L  *  V  K  S  T  C  F  K  V  N  G  I  T  Q  N  S  N  I  L  G  S  S  V  L  S  V  F  F  L  C  L  P  G  L  F  K  V  H  S  L  F  S  L  S  T  *  L  L  L  C  I  M  T  G  L  I  T  A  F  K  T  I  K  *  K  S  Q  K  T  H  S  Q  Q  *  P  Q  K  T  H  S  K  Q  K  P  K  P  E  *  E  P  *  P  K  F  V  Q  V  L  L  L  W  L  V  V  Y  L  S  M  F  D  R  F  V  N  F  F  S  S  P  L  F  I  G  K  I  A  G  I  I  S  D  *  G  C  H  H  A  V  F  </first_frame>
            <second_frame>  G  F  Y  G  G  A  G  L  G  N  Q  L  P  P  E  F  G  S  P  P  I  F  W  *  K  H  V  L  T  K  R  N  K  D  *  F  I  L  L  V  S  C  *  L  V  S  L  T  A  R  I  *  N  I  T  *  S  Q  W  C  N  L  H  C  F  I  L  A  I  F  S  T  L  D  S  A  K  L  L  L  S  L  W  S  C  *  G  G  S  E  I  K  A  V  V  E  E  T  C  *  V  A  G  L  G  Y  *  I  K  F  F  L  E  I  L  Q  I  S  I  K  V  Q  I  T  S  T  S  C  K  S  N  L  H  V  L  K  *  T  E  *  P  K  I  Q  I  Y  W  D  H  P  S  C  L  S  F  F  C  A  Y  L  A  F  S  K  Y  I  L  S  F  L  C  L  H  N  Y  C  F  V  L  *  L  G  *  L  Q  R  S  K  Q  L  S  E  S  P  K  R  R  T  P  S  S  S  P  K  R  R  T  P  S  R  S  P  S  R  S  R  S  R  S  Q  S  L  S  R  S  Y  F  C  G  L  S  Y  I  F  Q  C  L  T  V  S  L  I  F  S  P  R  L  F  L  *  V  R  L  L  E  S  S  V  I  E  G  A  I  M  L  C  L </second_frame>
            <third_frame>   D  S  M  V  E  L  D  W  G  T  N  C  H  L  N  L  D  H  H  L  F  F  G  R  S  M  F  *  Q  S  E  I  K  T  S  S  F  F  W  Y  P  A  N  W  S  L  *  L  L  E  F  K  I  L  H  S  L  N  G  V  T  C  I  V  L  Y  L  P  Y  F  P  L  W  I  L  P  N  C  Y  F  H  Y  G  H  A  E  V  E  V  K  S  K  Q  L  W  R  K  L  V  K  W  R  D  W  D  I  K  L  S  S  F  W  K  F  C  R  S  P  S  R  S  R  S  P  A  P  A  V  S  Q  I  Y  M  F  *  S  E  R  N  N  P  K  F  K  Y  I  G  I  I  R  L  V  C  L  F  F  V  L  T  W  P  F  Q  S  T  F  S  L  F  S  V  Y  I  I  I  A  L  Y  Y  D  W  V  N  Y  S  V  Q  N  N  *  V  K  V  P  K  D  A  L  P  A  V  A  P  K  D  A  L  Q  A  E  A  Q  A  G  V  G  A  V  A  K  V  C  P  G  L  T  S  V  A  C  R  I  S  F  N  V  *  P  F  R  *  F  F  L  L  A  S  F  Y  R  *  D  C  W  N  H  Q  *  L  R  V  P  S  C  C  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0038L16.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="7" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63281" stop="63018"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLEFKILHSLNGVTCIVLYLPYFPLWILPNCYFHYGHAEVEVKSKQLWRKLVKWRDWDIKLSSFWKFCRSPSRSRSPAPAVSQIYMF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0038L16.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="7" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62874" stop="62674"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LQRSKQLSESPKRRTPSSSPKRRTPSRSPSRSRSRSQSLSRSYFCGLSYIFQCLTVSLIFSPRLFL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="69269" PGL_stop="69592"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="69269" e_stop="69592"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.914"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.914">
            <gDNA_exon_boundary e_start="69269" e_stop="69592" e_length="324"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69269" stop="69592"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69269" stop="69561"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69269" stop="69421"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392727" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATGTTTTTCTCTCGCTTTATACAAAAACAGAAACACAATATATACATTGTTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCAATTGTATAATTCGTTGACCTTTTTCTCTGCAATATTTGAAGTGAAATGTTTGTAAATTGTATAATTGAGTGTATAACACGAAGATATATATTTTTGCATGTGTATATATAATTTTCTCTCGCTTTATACAAAACAGAAACAGAATTATACACTTCTATGTATAAAGCGAGAGAG</gDNA_template>
            <first_frame> *  N  V  C  I  L  H  N  Y  K  C  I  A  R  R  Y  M  F  F  S  R  F  I  Q  K  Q  K  H  N  I  Y  I  V  V  V  *  S  *  R  K  L  Y  F  T  A  I  V  *  F  A  I  V  *  F  V  D  L  F  L  C  N  I  *  S  E  M  F  V  N  C  I  I  E  C  I  T  R  R  Y  I  F  L  H  V  Y  I  *  F  S  L  A  L  Y  K  T  E  T  E  L  Y  T  S  M  Y  K  A  R  E </first_frame>
            <second_frame>  K  M  Y  V  Y  C  I  I  I  S  V  *  Q  E  D  I  C  F  S  L  A  L  Y  K  N  R  N  T  I  Y  T  L  L  L  Y  K  A  R  E  N  C  I  S  L  Q  L  Y  N  S  Q  L  Y  N  S  L  T  F  F  S  A  I  F  E  V  K  C  L  *  I  V  *  L  S  V  *  H  E  D  I  Y  F  C  M  C  I  Y  N  F  L  S  L  Y  T  K  Q  K  Q  N  Y  T  L  L  C  I  K  R  E   </second_frame>
            <third_frame>   K  C  M  Y  I  A  *  L  *  V  Y  S  K  K  I  Y  V  F  L  S  L  Y  T  K  T  E  T  Q  Y  I  H  C  C  C  I  K  L  E  K  I  V  F  H  C  N  C  I  I  R  N  C  I  I  R  *  P  F  S  L  Q  Y  L  K  *  N  V  C  K  L  Y  N  *  V  Y  N  T  K  I  Y  I  F  A  C  V  Y  I  I  F  S  R  F  I  Q  N  R  N  R  I  I  H  F  Y  V  *  S  E  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0038L16.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="70381" PGL_stop="74089"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="70381" e_stop="70730"/>
            <exon e_start="73519" e_stop="74015"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="0.991"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="70381" e_stop="70730" e_length="350"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="70731" i_stop="73518" i_length="2788"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="73519" e_stop="74015" e_length="497"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70381" stop="70730"/>
              <exon start="73519" stop="74013"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70465" stop="70730"/>
              <exon start="73519" stop="73859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247174" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70483" stop="70730"/>
              <exon start="73519" stop="74008"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E461011" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70483" stop="70730"/>
              <exon start="73519" stop="73844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E575982" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70528" stop="70730"/>
              <exon start="73519" stop="73996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451343" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70528" stop="70730"/>
              <exon start="73519" stop="73937"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E423917" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70700" stop="70730"/>
              <exon start="73519" stop="74015"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391900" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGATCTACCTCTGAAGTATTTTTTTTAAAAAATAGATGGTATACATAAAAAGATCAAAATAAAATAGTCCAACCCCAAAGACCATTTTGATCAGTAAAAAATGGCGAGTGGAAGAGCAGTAGAAGCCCTTCGAGCTTACAGATCAGTGTTGAAGGCCACTCATAAAGCCTTCGCCGGAGATACTTTCATGCTCCAACAATCCGCCGCCGAGGTCAGAAAGAAATTCGAGGAGAATCGCCACGTCTCATCGGAGGCTGATATTCAGAGGCTATTGGAGGATGCAACTGAGGCCTCTTCGTTCATATCTACTATGATTATCCAAGCCAAAGCTACACCTTCCGGTGCTTTTG : TGGTAAAGCCTGAGAAAGAACATGCTGGAGCAACGCTCGAGATTCCTTCTGAAGAGATTCTTAAGAAGTCAGCTTAAGCATATTCAAGGAAGCTCAGAGCATTTAGACTGCTGTGTTAGCACTTTAATCTTTCATAAACTGTGAGTTTTTCTTGTGAGTTTCTCCACTTGGAATTTTCTCAGAGGTTCTGCTTTCTCCAAGGTCATCGCGTTTCAGTCTTTCCTGTTTTTGTTACATTTAGGCCATAATTAGTGGATACTGCATCCATCTATCTACATCTTTCTCCTTTGTGTAGCTACAATCACCTTACAAAGCAAGCAGGTGCAGCTTTGCTTAAACATGGCTATTGTGATAAATGATTAAAAGGTTAGTTGGACCAAATGTGCCACTAAATAGAGTTTAAATTTTATTTATTGACGGTGTAAAATATTTGCACAAGTGTAATTTTCCTTGCTCCAATAGGGCATGATCCCCTTTTGCACCAACTAATGCACAAT</gDNA_template>
            <first_frame> *  S  T  S  E  V  F  F  L  K  N  R  W  Y  T  *  K  D  Q  N  K  I  V  Q  P  Q  R  P  F  *  S  V  K  N  G  E  W  K  S  S  R  S  P  S  S  L  Q  I  S  V  E  G  H  S  *  S  L  R  R  R  Y  F  H  A  P  T  I  R  R  R  G  Q  K  E  I  R  G  E  S  P  R  L  I  G  G  *  Y  S  E  A  I  G  G  C  N  *  G  L  F  V  H  I  Y  Y  D  Y  P  S  Q  S  Y  T  F  R  C  F  C :   G  K  A  *  E  R  T  C  W  S  N  A  R  D  S  F  *  R  D  S  *  E  V  S  L  S  I  F  K  E  A  Q  S  I  *  T  A  V  L  A  L  *  S  F  I  N  C  E  F  F  L  *  V  S  P  L  G  I  F  S  E  V  L  L  S  P  R  S  S  R  F  S  L  S  C  F  C  Y  I  *  A  I  I  S  G  Y  C  I  H  L  S  T  S  F  S  F  V  *  L  Q  S  P  Y  K  A  S  R  C  S  F  A  *  T  W  L  L  *  *  M  I  K  R  L  V  G  P  N  V  P  L  N  R  V  *  I  L  F  I  D  G  V  K  Y  L  H  K  C  N  F  P  C  S  N  R  A  *  S  P  F  A  P  T  N  A  Q  </first_frame>
            <second_frame>  D  L  P  L  K  Y  F  F  *  K  I  D  G  I  H  K  K  I  K  I  K  *  S  N  P  K  D  H  F  D  Q  *  K  M  A  S  G  R  A  V  E  A  L  R  A  Y  R  S  V  L  K  A  T  H  K  A  F  A  G  D  T  F  M  L  Q  Q  S  A  A  E  V  R  K  K  F  E  E  N  R  H  V  S  S  E  A  D  I  Q  R  L  L  E  D  A  T  E  A  S  S  F  I  S  T  M  I  I  Q  A  K  A  T  P  S  G  A  F   : V  V  K  P  E  K  E  H  A  G  A  T  L  E  I  P  S  E  E  I  L  K  K  S  A  *  A  Y  S  R  K  L  R  A  F  R  L  L  C  *  H  F  N  L  S  *  T  V  S  F  S  C  E  F  L  H  L  E  F  S  Q  R  F  C  F  L  Q  G  H  R  V  S  V  F  P  V  F  V  T  F  R  P  *  L  V  D  T  A  S  I  Y  L  H  L  S  P  L  C  S  Y  N  H  L  T  K  Q  A  G  A  A  L  L  K  H  G  Y  C  D  K  *  L  K  G  *  L  D  Q  M  C  H  *  I  E  F  K  F  Y  L  L  T  V  *  N  I  C  T  S  V  I  F  L  A  P  I  G  H  D  P  L  L  H  Q  L  M  H  N </second_frame>
            <third_frame>   I  Y  L  *  S  I  F  F  K  K  *  M  V  Y  I  K  R  S  K  *  N  S  P  T  P  K  T  I  L  I  S  K  K  W  R  V  E  E  Q  *  K  P  F  E  L  T  D  Q  C  *  R  P  L  I  K  P  S  P  E  I  L  S  C  S  N  N  P  P  P  R  S  E  R  N  S  R  R  I  A  T  S  H  R  R  L  I  F  R  G  Y  W  R  M  Q  L  R  P  L  R  S  Y  L  L  *  L  S  K  P  K  L  H  L  P  V  L  L  :  W  *  S  L  R  K  N  M  L  E  Q  R  S  R  F  L  L  K  R  F  L  R  S  Q  L  K  H  I  Q  G  S  S  E  H  L  D  C  C  V  S  T  L  I  F  H  K  L  *  V  F  L  V  S  F  S  T  W  N  F  L  R  G  S  A  F  S  K  V  I  A  F  Q  S  F  L  F  L  L  H  L  G  H  N  *  W  I  L  H  P  S  I  Y  I  F  L  L  C  V  A  T  I  T  L  Q  S  K  Q  V  Q  L  C  L  N  M  A  I  V  I  N  D  *  K  V  S  W  T  K  C  A  T  K  *  S  L  N  F  I  Y  *  R  C  K  I  F  A  Q  V  *  F  S  L  L  Q  *  G  M  I  P  F  C  T  N  *  C  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0038L16.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70478" stop="70730"/>
                    <exon start="73519" stop="73595"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>327</number_coding_nucleotides>
                  <number_encoded_amino_acids>109</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMASGRAVEALRAYRSVLKATHKAFAGDTFMLQQSAAEVRKKFEENRHVSSEADIQRLLEDATEASSFISTMIIQAKATPSGAFVVKPEKEHAGATLEIPSEEILKKSA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="70666" e_stop="70730"/>
            <exon e_start="73519" e_stop="73788"/>
            <exon e_start="74083" e_stop="74089"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.972" e_score="0.930"/>
          <exon-only e_score="0.571"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="70666" e_stop="70730" e_length="65"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="70731" i_stop="73518" i_length="2788"/>
          </intron>
          <exon e_serial="2" e_score="0.930">
            <gDNA_exon_boundary e_start="73519" e_stop="73788" e_length="270"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.972">
            <gDNA_intron_boundary i_start="73789" i_stop="74082" i_length="294"/>
          </intron>
          <exon e_serial="3" e_score="0.571">
            <gDNA_exon_boundary e_start="74083" e_stop="74089" e_length="7"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70666" stop="70730"/>
              <exon start="73519" stop="73788"/>
              <exon start="74083" stop="74089"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E605165" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGAGGCCTCTTCGTTCATATCTACTATGATTATCCAAGCCAAAGCTACACCTTCCGGTGCTTTTG : TGGTAAAGCCTGAGAAAGAACATGCTGGAGCAACGCTCGAGATTCCTTCTGAAGAGATTCTTAAGAAGTCAGCTTAAGCATATTCAAGGAAGCTCAGAGCATTTAGACTGCTGTGTTAGCACTTTAATCTTTCATAAACTGTGAGTTTTTCTTGTGAGTTTCTCCACTTGGAATTTTCTCAGAGGTTCTGCTTTCTCCAAGGTCATCGCGTTTCAGTCTTTCCTGTTTTTGTTACATTTAGGCCATAATTAGTGGATACTGCATCCATCT : TGAATAA</gDNA_template>
            <first_frame> *  G  L  F  V  H  I  Y  Y  D  Y  P  S  Q  S  Y  T  F  R  C  F  C :   G  K  A  *  E  R  T  C  W  S  N  A  R  D  S  F  *  R  D  S  *  E  V  S  L  S  I  F  K  E  A  Q  S  I  *  T  A  V  L  A  L  *  S  F  I  N  C  E  F  F  L  *  V  S  P  L  G  I  F  S  E  V  L  L  S  P  R  S  S  R  F  S  L  S  C  F  C  Y  I  *  A  I  I  S  G  Y  C  I  H  L :   E  * </first_frame>
            <second_frame>  E  A  S  S  F  I  S  T  M  I  I  Q  A  K  A  T  P  S  G  A  F   : V  V  K  P  E  K  E  H  A  G  A  T  L  E  I  P  S  E  E  I  L  K  K  S  A  *  A  Y  S  R  K  L  R  A  F  R  L  L  C  *  H  F  N  L  S  *  T  V  S  F  S  C  E  F  L  H  L  E  F  S  Q  R  F  C  F  L  Q  G  H  R  V  S  V  F  P  V  F  V  T  F  R  P  *  L  V  D  T  A  S  I   : L  N   </second_frame>
            <third_frame>   R  P  L  R  S  Y  L  L  *  L  S  K  P  K  L  H  L  P  V  L  L  :  W  *  S  L  R  K  N  M  L  E  Q  R  S  R  F  L  L  K  R  F  L  R  S  Q  L  K  H  I  Q  G  S  S  E  H  L  D  C  C  V  S  T  L  I  F  H  K  L  *  V  F  L  V  S  F  S  T  W  N  F  L  R  G  S  A  F  S  K  V  I  A  F  Q  S  F  L  F  L  L  H  L  G  H  N  *  W  I  L  H  P  S  :  *  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0038L16.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="86279" PGL_stop="90930"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="86279" e_stop="86951"/>
            <exon e_start="87055" e_stop="87202"/>
            <exon e_start="88664" e_stop="88743"/>
            <exon e_start="89297" e_stop="89380"/>
            <exon e_start="89465" e_stop="89539"/>
            <exon e_start="90045" e_stop="90137"/>
            <exon e_start="90431" e_stop="90930"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.000" e_score="0.972"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.972">
            <gDNA_exon_boundary e_start="86279" e_stop="86951" e_length="673"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.000">
            <gDNA_intron_boundary i_start="86952" i_stop="87054" i_length="103"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="87055" e_stop="87202" e_length="148"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="87203" i_stop="88663" i_length="1461"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="88664" e_stop="88743" e_length="80"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="88744" i_stop="89296" i_length="553"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="89297" e_stop="89380" e_length="84"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.991">
            <gDNA_intron_boundary i_start="89381" i_stop="89464" i_length="84"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="89465" e_stop="89539" e_length="75"/>
          </exon>
          <intron i_serial="5" don_prob="0.987" acc_prob="0.998">
            <gDNA_intron_boundary i_start="89540" i_stop="90044" i_length="505"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="90045" e_stop="90137" e_length="93"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="90138" i_stop="90430" i_length="293"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="90431" e_stop="90930" e_length="500"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86279" stop="86951"/>
              <exon start="87055" stop="87132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705357" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86279" stop="86900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E604685" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86280" stop="86868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326028" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86347" stop="86883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558135" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86392" stop="86951"/>
              <exon start="87055" stop="87128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408689" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86395" stop="86951"/>
              <exon start="87055" stop="87093"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E417269" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86395" stop="86821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445836" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86445" stop="86951"/>
              <exon start="87055" stop="87128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408688" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86531" stop="86951"/>
              <exon start="87055" stop="87093"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331175" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86565" stop="86951"/>
              <exon start="87055" stop="87091"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245750" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86593" stop="86951"/>
              <exon start="87055" stop="87202"/>
              <exon start="88664" stop="88713"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265583" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86616" stop="86912"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210410" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86651" stop="86951"/>
              <exon start="87055" stop="87202"/>
              <exon start="88664" stop="88743"/>
              <exon start="89297" stop="89326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304233" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86661" stop="86951"/>
              <exon start="87055" stop="87202"/>
              <exon start="88664" stop="88743"/>
              <exon start="89297" stop="89380"/>
              <exon start="89465" stop="89539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E603833" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86682" stop="86951"/>
              <exon start="87055" stop="87202"/>
              <exon start="88664" stop="88743"/>
              <exon start="89297" stop="89380"/>
              <exon start="89465" stop="89539"/>
              <exon start="90045" stop="90132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466059" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86725" stop="86951"/>
              <exon start="87055" stop="87202"/>
              <exon start="88664" stop="88743"/>
              <exon start="89297" stop="89349"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223330" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86736" stop="86951"/>
              <exon start="87055" stop="87202"/>
              <exon start="88664" stop="88743"/>
              <exon start="89297" stop="89365"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242553" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86765" stop="86951"/>
              <exon start="87055" stop="87202"/>
              <exon start="88664" stop="88743"/>
              <exon start="89297" stop="89380"/>
              <exon start="89465" stop="89539"/>
              <exon start="90045" stop="90134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453085" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86768" stop="86951"/>
              <exon start="87055" stop="87202"/>
              <exon start="88664" stop="88743"/>
              <exon start="89297" stop="89380"/>
              <exon start="89465" stop="89514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303320" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86768" stop="86951"/>
              <exon start="87055" stop="87202"/>
              <exon start="88664" stop="88743"/>
              <exon start="89297" stop="89380"/>
              <exon start="89465" stop="89490"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303465" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86810" stop="86951"/>
              <exon start="87055" stop="87202"/>
              <exon start="88664" stop="88743"/>
              <exon start="89297" stop="89349"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240852" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86816" stop="86951"/>
              <exon start="87055" stop="87202"/>
              <exon start="88664" stop="88743"/>
              <exon start="89297" stop="89380"/>
              <exon start="89465" stop="89539"/>
              <exon start="90045" stop="90132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331410" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86825" stop="86951"/>
              <exon start="87055" stop="87202"/>
              <exon start="88664" stop="88743"/>
              <exon start="89297" stop="89380"/>
              <exon start="89465" stop="89539"/>
              <exon start="90045" stop="90134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86882" stop="86951"/>
              <exon start="87055" stop="87202"/>
              <exon start="88664" stop="88743"/>
              <exon start="89297" stop="89374"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200737" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86946" stop="86951"/>
              <exon start="87055" stop="87202"/>
              <exon start="88664" stop="88743"/>
              <exon start="89297" stop="89349"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222980" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87156" stop="87202"/>
              <exon start="88664" stop="88743"/>
              <exon start="89297" stop="89380"/>
              <exon start="89465" stop="89539"/>
              <exon start="90045" stop="90137"/>
              <exon start="90431" stop="90590"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478012" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87157" stop="87202"/>
              <exon start="88664" stop="88743"/>
              <exon start="89297" stop="89380"/>
              <exon start="89465" stop="89539"/>
              <exon start="90045" stop="90096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200754" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89335" stop="89380"/>
              <exon start="89465" stop="89539"/>
              <exon start="90045" stop="90137"/>
              <exon start="90431" stop="90719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89502" stop="89539"/>
              <exon start="90045" stop="90137"/>
              <exon start="90431" stop="90930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354807" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90075" stop="90137"/>
              <exon start="90431" stop="90846"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240772" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTTTCTCTCTCTTTTTCAACACAATTTTGAGAGAAGAAAAATAAATAAATCATGACTTCCGAATTGATTTATCGTGGACCGGAATCAGTTCCGGTGACCGACGGTTACACTCCCAAACCACATAAACCATGGTTTACTGTAATTCGTCCCCTTCGTTACTTGCTCCGAGAACAGAGAATTGTTTTTCTATTCGCAGGCATTGCTATCGCTTCTCTAATTTTTGCTTTTTTACCGTCTTCTCGTTCCTCCGGAGGATCGAGCTACGCTAACACCGGGATCTACGATTCGTACTTACCGTCGGAGTCGACTGAGTCTCAGGTGGCTCACCGGATGATCTATCATAATCGGGTCGGGTTCGGGTCGATTAATTCCGGTGGGAAGATCCCGTTGGGATTAAAGCGGAAGGTTTTGAGGATTGTGGTGACTGGTGGTGCTGGTTTTGTTGGTAGTCATTTAGTGGATCGTTTGATTGCGAGAGGTGATAGTGTGATCGTCGTTGATAATTTCTTCACCGGACGGAAAGAGAACGTTATGCATCATTTTGGTAACCCTAGGTTTGAGCTTATTAGACATGATGTTGTTGAGCCACTTTTGCTTGAAGTTGACCAGATCTATCATCTCGCTTGCCCTGCTTCTCCCGTTCATTACAAGCATAATCCCGTCAAAACTATC : AAGACTAATGTAGTTGGTACTTTGAACATGCTGGGATTGGCTAAAAGAGTCGGTGCGAGGTTTTTGCTAACCAGCACTAGCGAAGTATATGGTGATCCTTTAGAACATCCACAGAAGGAGACATACTGGGGCAATGTTAATCCTATTG : GTGTCCGAAGTTGCTACGATGAGGGAAAACGAACAGCTGAAACATTGACAATGGATTATCACAGAGGTGCAGAAGTTGAG : GTGAGAATCGCTAGGATCTTTAACACTTATGGACCTCGTATGTGTATTGATGACGGTCGCGTTGTCAGCAACTTTGTCGCTCAG : GCTTTAAGGAAAGAGCCTTTGACAGTTTATGGTGATGGGAAACAAACAAGAAGTTTCCAATTTGTTTCAGATCTG : GTTGAAGGCTTAATGCGGTTGATGGAAGGAGAACATGTCGGACCCTTCAACCTCGGAAACCCTGGTGAATTCACAATGCTTGAACTTGCTAAG : GTGGTCCAGGAAACCATTGACCCAAATGCACAGATTGTACACAAACCAAACACAGAAGATGACCCACACAAGCGAAAACCTGATATCTCAAAGGCTAAAGAGTTACTTGGTTGGGAACCGAAAGTGGCTCTTAGAAATGGTTTGCCTATGATGGTTCAAGACTTCAGGCAACGTATTTTCGGTGATCACAAAGAAGAAAGTGCAAAGATCACCACAGCTTAATAGAAAAGAAAAGTGTGTTATGTTTGGATATTTGTTAAACTTGGTAAGGGGTGAAACGCACGCGAAGAAAAGACGACTCTCTTGTGTTGATGTTAGTTTCAAGCAGAAGTGCAGGCAGCAGAAGACTGAGCTGAGCTCCCCATGTACTTCTTTTGAATAGTTGGTTCTTTGTCAATTTTGCAATTCTATTATTAGTATTATTATCCTTTTGTTAACAGTTGATGTAGTAGACCAACTTTCATTATTCTCATAAGAATAAAACTGGTACGTATTTTCCC</gDNA_template>
            <first_frame> L  F  S  L  F  F  N  T  I  L  R  E  E  K  *  I  N  H  D  F  R  I  D  L  S  W  T  G  I  S  S  G  D  R  R  L  H  S  Q  T  T  *  T  M  V  Y  C  N  S  S  P  S  L  L  A  P  R  T  E  N  C  F  S  I  R  R  H  C  Y  R  F  S  N  F  C  F  F  T  V  F  S  F  L  R  R  I  E  L  R  *  H  R  D  L  R  F  V  L  T  V  G  V  D  *  V  S  G  G  S  P  D  D  L  S  *  S  G  R  V  R  V  D  *  F  R  W  E  D  P  V  G  I  K  A  E  G  F  E  D  C  G  D  W  W  C  W  F  C  W  *  S  F  S  G  S  F  D  C  E  R  *  *  C  D  R  R  *  *  F  L  H  R  T  E  R  E  R  Y  A  S  F  W  *  P  *  V  *  A  Y  *  T  *  C  C  *  A  T  F  A  *  S  *  P  D  L  S  S  R  L  P  C  F  S  R  S  L  Q  A  *  S  R  Q  N  Y   : Q  D  *  C  S  W  Y  F  E  H  A  G  I  G  *  K  S  R  C  E  V  F  A  N  Q  H  *  R  S  I  W  *  S  F  R  T  S  T  E  G  D  I  L  G  Q  C  *  S  Y  W :   C  P  K  L  L  R  *  G  K  T  N  S  *  N  I  D  N  G  L  S  Q  R  C  R  S  *   : G  E  N  R  *  D  L  *  H  L  W  T  S  Y  V  Y  *  *  R  S  R  C  Q  Q  L  C  R  S   : G  F  K  E  R  A  F  D  S  L  W  *  W  E  T  N  K  K  F  P  I  C  F  R  S   : G  *  R  L  N  A  V  D  G  R  R  T  C  R  T  L  Q  P  R  K  P  W  *  I  H  N  A  *  T  C  *   : G  G  P  G  N  H  *  P  K  C  T  D  C  T  Q  T  K  H  R  R  *  P  T  Q  A  K  T  *  Y  L  K  G  *  R  V  T  W  L  G  T  E  S  G  S  *  K  W  F  A  Y  D  G  S  R  L  Q  A  T  Y  F  R  *  S  Q  R  R  K  C  K  D  H  H  S  L  I  E  K  K  S  V  L  C  L  D  I  C  *  T  W  *  G  V  K  R  T  R  R  K  D  D  S  L  V  L  M  L  V  S  S  R  S  A  G  S  R  R  L  S  *  A  P  H  V  L  L  L  N  S  W  F  F  V  N  F  A  I  L  L  L  V  L  L  S  F  C  *  Q  L  M  *  *  T  N  F  H  Y  S  H  K  N  K  T  G  T  Y  F  P </first_frame>
            <second_frame>  F  S  L  S  F  S  T  Q  F  *  E  K  K  N  K  *  I  M  T  S  E  L  I  Y  R  G  P  E  S  V  P  V  T  D  G  Y  T  P  K  P  H  K  P  W  F  T  V  I  R  P  L  R  Y  L  L  R  E  Q  R  I  V  F  L  F  A  G  I  A  I  A  S  L  I  F  A  F  L  P  S  S  R  S  S  G  G  S  S  Y  A  N  T  G  I  Y  D  S  Y  L  P  S  E  S  T  E  S  Q  V  A  H  R  M  I  Y  H  N  R  V  G  F  G  S  I  N  S  G  G  K  I  P  L  G  L  K  R  K  V  L  R  I  V  V  T  G  G  A  G  F  V  G  S  H  L  V  D  R  L  I  A  R  G  D  S  V  I  V  V  D  N  F  F  T  G  R  K  E  N  V  M  H  H  F  G  N  P  R  F  E  L  I  R  H  D  V  V  E  P  L  L  L  E  V  D  Q  I  Y  H  L  A  C  P  A  S  P  V  H  Y  K  H  N  P  V  K  T  I  :  K  T  N  V  V  G  T  L  N  M  L  G  L  A  K  R  V  G  A  R  F  L  L  T  S  T  S  E  V  Y  G  D  P  L  E  H  P  Q  K  E  T  Y  W  G  N  V  N  P  I   : G  V  R  S  C  Y  D  E  G  K  R  T  A  E  T  L  T  M  D  Y  H  R  G  A  E  V  E  :  V  R  I  A  R  I  F  N  T  Y  G  P  R  M  C  I  D  D  G  R  V  V  S  N  F  V  A  Q  :  A  L  R  K  E  P  L  T  V  Y  G  D  G  K  Q  T  R  S  F  Q  F  V  S  D  L  :  V  E  G  L  M  R  L  M  E  G  E  H  V  G  P  F  N  L  G  N  P  G  E  F  T  M  L  E  L  A  K  :  V  V  Q  E  T  I  D  P  N  A  Q  I  V  H  K  P  N  T  E  D  D  P  H  K  R  K  P  D  I  S  K  A  K  E  L  L  G  W  E  P  K  V  A  L  R  N  G  L  P  M  M  V  Q  D  F  R  Q  R  I  F  G  D  H  K  E  E  S  A  K  I  T  T  A  *  *  K  R  K  V  C  Y  V  W  I  F  V  K  L  G  K  G  *  N  A  R  E  E  K  T  T  L  L  C  *  C  *  F  Q  A  E  V  Q  A  A  E  D  *  A  E  L  P  M  Y  F  F  *  I  V  G  S  L  S  I  L  Q  F  Y  Y  *  Y  Y  Y  P  F  V  N  S  *  C  S  R  P  T  F  I  I  L  I  R  I  K  L  V  R  I  F   </second_frame>
            <third_frame>   F  L  S  L  F  Q  H  N  F  E  R  R  K  I  N  K  S  *  L  P  N  *  F  I  V  D  R  N  Q  F  R  *  P  T  V  T  L  P  N  H  I  N  H  G  L  L  *  F  V  P  F  V  T  C  S  E  N  R  E  L  F  F  Y  S  Q  A  L  L  S  L  L  *  F  L  L  F  Y  R  L  L  V  P  P  E  D  R  A  T  L  T  P  G  S  T  I  R  T  Y  R  R  S  R  L  S  L  R  W  L  T  G  *  S  I  I  I  G  S  G  S  G  R  L  I  P  V  G  R  S  R  W  D  *  S  G  R  F  *  G  L  W  *  L  V  V  L  V  L  L  V  V  I  *  W  I  V  *  L  R  E  V  I  V  *  S  S  L  I  I  S  S  P  D  G  K  R  T  L  C  I  I  L  V  T  L  G  L  S  L  L  D  M  M  L  L  S  H  F  C  L  K  L  T  R  S  I  I  S  L  A  L  L  L  P  F  I  T  S  I  I  P  S  K  L  S :   R  L  M  *  L  V  L  *  T  C  W  D  W  L  K  E  S  V  R  G  F  C  *  P  A  L  A  K  Y  M  V  I  L  *  N  I  H  R  R  R  H  T  G  A  M  L  I  L  L  :  V  S  E  V  A  T  M  R  E  N  E  Q  L  K  H  *  Q  W  I  I  T  E  V  Q  K  L  R :   *  E  S  L  G  S  L  T  L  M  D  L  V  C  V  L  M  T  V  A  L  S  A  T  L  S  L  R :   L  *  G  K  S  L  *  Q  F  M  V  M  G  N  K  Q  E  V  S  N  L  F  Q  I  W :   L  K  A  *  C  G  *  W  K  E  N  M  S  D  P  S  T  S  E  T  L  V  N  S  Q  C  L  N  L  L  R :   W  S  R  K  P  L  T  Q  M  H  R  L  Y  T  N  Q  T  Q  K  M  T  H  T  S  E  N  L  I  S  Q  R  L  K  S  Y  L  V  G  N  R  K  W  L  L  E  M  V  C  L  *  W  F  K  T  S  G  N  V  F  S  V  I  T  K  K  K  V  Q  R  S  P  Q  L  N  R  K  E  K  C  V  M  F  G  Y  L  L  N  L  V  R  G  E  T  H  A  K  K  R  R  L  S  C  V  D  V  S  F  K  Q  K  C  R  Q  Q  K  T  E  L  S  S  P  C  T  S  F  E  *  L  V  L  C  Q  F  C  N  S  I  I  S  I  I  I  L  L  L  T  V  D  V  V  D  Q  L  S  L  F  S  *  E  *  N  W  Y  V  F  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0038L16.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86328" stop="86951"/>
                    <exon start="87055" stop="87202"/>
                    <exon start="88664" stop="88743"/>
                    <exon start="89297" stop="89380"/>
                    <exon start="89465" stop="89539"/>
                    <exon start="90045" stop="90137"/>
                    <exon start="90431" stop="90652"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1323</number_coding_nucleotides>
                  <number_encoded_amino_acids>441</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IMTSELIYRGPESVPVTDGYTPKPHKPWFTVIRPLRYLLREQRIVFLFAGIAIASLIFAFLPSSRSSGGSSYANTGIYDSYLPSESTESQVAHRMIYHNRVGFGSINSGGKIPLGLKRKVLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPRFELIRHDVVEPLLLEVDQIYHLACPASPVHYKHNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLEHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAEVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGEFTMLELAKVVQETIDPNAQIVHKPNTEDDPHKRKPDISKAKELLGWEPKVALRNGLPMMVQDFRQRIFGDHKEESAKITTA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="87051" e_stop="87202"/>
            <exon e_start="88664" e_stop="88743"/>
            <exon e_start="89297" e_stop="89380"/>
            <exon e_start="89465" e_stop="89539"/>
            <exon e_start="90045" e_stop="90137"/>
            <exon e_start="90431" e_stop="90930"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="0.987"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="87051" e_stop="87202" e_length="152"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="87203" i_stop="88663" i_length="1461"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="88664" e_stop="88743" e_length="80"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="88744" i_stop="89296" i_length="553"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="89297" e_stop="89380" e_length="84"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.991">
            <gDNA_intron_boundary i_start="89381" i_stop="89464" i_length="84"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="89465" e_stop="89539" e_length="75"/>
          </exon>
          <intron i_serial="4" don_prob="0.987" acc_prob="0.998">
            <gDNA_intron_boundary i_start="89540" i_stop="90044" i_length="505"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="90045" e_stop="90137" e_length="93"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="90138" i_stop="90430" i_length="293"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="90431" e_stop="90930" e_length="500"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87051" stop="87202"/>
              <exon start="88664" stop="88743"/>
              <exon start="89297" stop="89380"/>
              <exon start="89465" stop="89539"/>
              <exon start="90045" stop="90137"/>
              <exon start="90431" stop="90522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370251" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87051" stop="87202"/>
              <exon start="88664" stop="88743"/>
              <exon start="89297" stop="89380"/>
              <exon start="89465" stop="89539"/>
              <exon start="90045" stop="90118"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271845" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87156" stop="87202"/>
              <exon start="88664" stop="88743"/>
              <exon start="89297" stop="89380"/>
              <exon start="89465" stop="89539"/>
              <exon start="90045" stop="90137"/>
              <exon start="90431" stop="90590"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478012" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87157" stop="87202"/>
              <exon start="88664" stop="88743"/>
              <exon start="89297" stop="89380"/>
              <exon start="89465" stop="89539"/>
              <exon start="90045" stop="90096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200754" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89335" stop="89380"/>
              <exon start="89465" stop="89539"/>
              <exon start="90045" stop="90137"/>
              <exon start="90431" stop="90719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89502" stop="89539"/>
              <exon start="90045" stop="90137"/>
              <exon start="90431" stop="90930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354807" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90075" stop="90137"/>
              <exon start="90431" stop="90846"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240772" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTACAAGACTAATGTAGTTGGTACTTTGAACATGCTGGGATTGGCTAAAAGAGTCGGTGCGAGGTTTTTGCTAACCAGCACTAGCGAAGTATATGGTGATCCTTTAGAACATCCACAGAAGGAGACATACTGGGGCAATGTTAATCCTATTG : GTGTCCGAAGTTGCTACGATGAGGGAAAACGAACAGCTGAAACATTGACAATGGATTATCACAGAGGTGCAGAAGTTGAG : GTGAGAATCGCTAGGATCTTTAACACTTATGGACCTCGTATGTGTATTGATGACGGTCGCGTTGTCAGCAACTTTGTCGCTCAG : GCTTTAAGGAAAGAGCCTTTGACAGTTTATGGTGATGGGAAACAAACAAGAAGTTTCCAATTTGTTTCAGATCTG : GTTGAAGGCTTAATGCGGTTGATGGAAGGAGAACATGTCGGACCCTTCAACCTCGGAAACCCTGGTGAATTCACAATGCTTGAACTTGCTAAG : GTGGTCCAGGAAACCATTGACCCAAATGCACAGATTGTACACAAACCAAACACAGAAGATGACCCACACAAGCGAAAACCTGATATCTCAAAGGCTAAAGAGTTACTTGGTTGGGAACCGAAAGTGGCTCTTAGAAATGGTTTGCCTATGATGGTTCAAGACTTCAGGCAACGTATTTTCGGTGATCACAAAGAAGAAAGTGCAAAGATCACCACAGCTTAATAGAAAAGAAAAGTGTGTTATGTTTGGATATTTGTTAAACTTGGTAAGGGGTGAAACGCACGCGAAGAAAAGACGACTCTCTTGTGTTGATGTTAGTTTCAAGCAGAAGTGCAGGCAGCAGAAGACTGAGCTGAGCTCCCCATGTACTTCTTTTGAATAGTTGGTTCTTTGTCAATTTTGCAATTCTATTATTAGTATTATTATCCTTTTGTTAACAGTTGATGTAGTAGACCAACTTTCATTATTCTCATAAGAATAAAACTGGTACGTATTTTCCC</gDNA_template>
            <first_frame> L  Q  D  *  C  S  W  Y  F  E  H  A  G  I  G  *  K  S  R  C  E  V  F  A  N  Q  H  *  R  S  I  W  *  S  F  R  T  S  T  E  G  D  I  L  G  Q  C  *  S  Y  W :   C  P  K  L  L  R  *  G  K  T  N  S  *  N  I  D  N  G  L  S  Q  R  C  R  S  *   : G  E  N  R  *  D  L  *  H  L  W  T  S  Y  V  Y  *  *  R  S  R  C  Q  Q  L  C  R  S   : G  F  K  E  R  A  F  D  S  L  W  *  W  E  T  N  K  K  F  P  I  C  F  R  S   : G  *  R  L  N  A  V  D  G  R  R  T  C  R  T  L  Q  P  R  K  P  W  *  I  H  N  A  *  T  C  *   : G  G  P  G  N  H  *  P  K  C  T  D  C  T  Q  T  K  H  R  R  *  P  T  Q  A  K  T  *  Y  L  K  G  *  R  V  T  W  L  G  T  E  S  G  S  *  K  W  F  A  Y  D  G  S  R  L  Q  A  T  Y  F  R  *  S  Q  R  R  K  C  K  D  H  H  S  L  I  E  K  K  S  V  L  C  L  D  I  C  *  T  W  *  G  V  K  R  T  R  R  K  D  D  S  L  V  L  M  L  V  S  S  R  S  A  G  S  R  R  L  S  *  A  P  H  V  L  L  L  N  S  W  F  F  V  N  F  A  I  L  L  L  V  L  L  S  F  C  *  Q  L  M  *  *  T  N  F  H  Y  S  H  K  N  K  T  G  T  Y  F  P </first_frame>
            <second_frame>  Y  K  T  N  V  V  G  T  L  N  M  L  G  L  A  K  R  V  G  A  R  F  L  L  T  S  T  S  E  V  Y  G  D  P  L  E  H  P  Q  K  E  T  Y  W  G  N  V  N  P  I   : G  V  R  S  C  Y  D  E  G  K  R  T  A  E  T  L  T  M  D  Y  H  R  G  A  E  V  E  :  V  R  I  A  R  I  F  N  T  Y  G  P  R  M  C  I  D  D  G  R  V  V  S  N  F  V  A  Q  :  A  L  R  K  E  P  L  T  V  Y  G  D  G  K  Q  T  R  S  F  Q  F  V  S  D  L  :  V  E  G  L  M  R  L  M  E  G  E  H  V  G  P  F  N  L  G  N  P  G  E  F  T  M  L  E  L  A  K  :  V  V  Q  E  T  I  D  P  N  A  Q  I  V  H  K  P  N  T  E  D  D  P  H  K  R  K  P  D  I  S  K  A  K  E  L  L  G  W  E  P  K  V  A  L  R  N  G  L  P  M  M  V  Q  D  F  R  Q  R  I  F  G  D  H  K  E  E  S  A  K  I  T  T  A  *  *  K  R  K  V  C  Y  V  W  I  F  V  K  L  G  K  G  *  N  A  R  E  E  K  T  T  L  L  C  *  C  *  F  Q  A  E  V  Q  A  A  E  D  *  A  E  L  P  M  Y  F  F  *  I  V  G  S  L  S  I  L  Q  F  Y  Y  *  Y  Y  Y  P  F  V  N  S  *  C  S  R  P  T  F  I  I  L  I  R  I  K  L  V  R  I  F   </second_frame>
            <third_frame>   T  R  L  M  *  L  V  L  *  T  C  W  D  W  L  K  E  S  V  R  G  F  C  *  P  A  L  A  K  Y  M  V  I  L  *  N  I  H  R  R  R  H  T  G  A  M  L  I  L  L  :  V  S  E  V  A  T  M  R  E  N  E  Q  L  K  H  *  Q  W  I  I  T  E  V  Q  K  L  R :   *  E  S  L  G  S  L  T  L  M  D  L  V  C  V  L  M  T  V  A  L  S  A  T  L  S  L  R :   L  *  G  K  S  L  *  Q  F  M  V  M  G  N  K  Q  E  V  S  N  L  F  Q  I  W :   L  K  A  *  C  G  *  W  K  E  N  M  S  D  P  S  T  S  E  T  L  V  N  S  Q  C  L  N  L  L  R :   W  S  R  K  P  L  T  Q  M  H  R  L  Y  T  N  Q  T  Q  K  M  T  H  T  S  E  N  L  I  S  Q  R  L  K  S  Y  L  V  G  N  R  K  W  L  L  E  M  V  C  L  *  W  F  K  T  S  G  N  V  F  S  V  I  T  K  K  K  V  Q  R  S  P  Q  L  N  R  K  E  K  C  V  M  F  G  Y  L  L  N  L  V  R  G  E  T  H  A  K  K  R  R  L  S  C  V  D  V  S  F  K  Q  K  C  R  Q  Q  K  T  E  L  S  S  P  C  T  S  F  E  *  L  V  L  C  Q  F  C  N  S  I  I  S  I  I  I  L  L  L  T  V  D  V  V  D  Q  L  S  L  F  S  *  E  *  N  W  Y  V  F  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0038L16.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87052" stop="87202"/>
                    <exon start="88664" stop="88743"/>
                    <exon start="89297" stop="89380"/>
                    <exon start="89465" stop="89539"/>
                    <exon start="90045" stop="90137"/>
                    <exon start="90431" stop="90652"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>702</number_coding_nucleotides>
                  <number_encoded_amino_acids>234</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLEHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAEVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGEFTMLELAKVVQETIDPNAQIVHKPNTEDDPHKRKPDISKAKELLGWEPKVALRNGLPMMVQDFRQRIFGDHKEESAKITTA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="95767" PGL_stop="91790"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="95767" e_stop="95683"/>
            <exon e_start="94950" e_stop="94926"/>
            <exon e_start="93846" e_stop="93769"/>
            <exon e_start="93509" e_stop="93405"/>
            <exon e_start="93210" e_stop="93090"/>
            <exon e_start="92242" e_stop="91790"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.950" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.639" acc_prob="0.999" e_score="0.981"/>
          <exon-intron don_prob="0.952" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="0.967"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="95767" e_stop="95683" e_length="85"/>
          </exon>
          <intron i_serial="1" don_prob="0.950" acc_prob="1.000">
            <gDNA_intron_boundary i_start="95682" i_stop="94951" i_length="732"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="94950" e_stop="94926" e_length="25"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.984">
            <gDNA_intron_boundary i_start="94925" i_stop="93847" i_length="1079"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="93846" e_stop="93769" e_length="78"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.963">
            <gDNA_intron_boundary i_start="93768" i_stop="93510" i_length="259"/>
          </intron>
          <exon e_serial="4" e_score="0.981">
            <gDNA_exon_boundary e_start="93509" e_stop="93405" e_length="105"/>
          </exon>
          <intron i_serial="4" don_prob="0.639" acc_prob="0.999">
            <gDNA_intron_boundary i_start="93404" i_stop="93211" i_length="194"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="93210" e_stop="93090" e_length="121"/>
          </exon>
          <intron i_serial="5" don_prob="0.952" acc_prob="0.992">
            <gDNA_intron_boundary i_start="93089" i_stop="92243" i_length="847"/>
          </intron>
          <exon e_serial="6" e_score="0.967">
            <gDNA_exon_boundary e_start="92242" e_stop="91790" e_length="453"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95767" stop="95683"/>
              <exon start="94950" stop="94926"/>
              <exon start="93846" stop="93769"/>
              <exon start="93509" stop="93407"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457278" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95763" stop="95683"/>
              <exon start="94950" stop="94926"/>
              <exon start="93846" stop="93769"/>
              <exon start="93509" stop="93405"/>
              <exon start="93210" stop="93090"/>
              <exon start="92242" stop="91959"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714277" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95762" stop="95683"/>
              <exon start="94950" stop="94926"/>
              <exon start="93846" stop="93769"/>
              <exon start="93509" stop="93405"/>
              <exon start="93210" stop="93090"/>
              <exon start="92242" stop="91999"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715841" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95756" stop="95683"/>
              <exon start="94950" stop="94926"/>
              <exon start="93846" stop="93769"/>
              <exon start="93509" stop="93405"/>
              <exon start="93210" stop="93090"/>
              <exon start="92242" stop="92019"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354098" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95756" stop="95683"/>
              <exon start="94950" stop="94926"/>
              <exon start="93846" stop="93769"/>
              <exon start="93509" stop="93405"/>
              <exon start="93210" stop="93090"/>
              <exon start="92242" stop="92131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319317" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95755" stop="95683"/>
              <exon start="94950" stop="94926"/>
              <exon start="93846" stop="93769"/>
              <exon start="93509" stop="93405"/>
              <exon start="93210" stop="93090"/>
              <exon start="92242" stop="92179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438910" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95752" stop="95683"/>
              <exon start="94950" stop="94926"/>
              <exon start="93846" stop="93769"/>
              <exon start="93509" stop="93405"/>
              <exon start="93210" stop="93090"/>
              <exon start="92242" stop="91910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348969" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95739" stop="95683"/>
              <exon start="94950" stop="94926"/>
              <exon start="93846" stop="93769"/>
              <exon start="93509" stop="93405"/>
              <exon start="93210" stop="93090"/>
              <exon start="92242" stop="92010"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271688" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95737" stop="95683"/>
              <exon start="94950" stop="94926"/>
              <exon start="93846" stop="93769"/>
              <exon start="93509" stop="93405"/>
              <exon start="93210" stop="93090"/>
              <exon start="92242" stop="91960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320099" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95736" stop="95683"/>
              <exon start="94950" stop="94926"/>
              <exon start="93846" stop="93769"/>
              <exon start="93509" stop="93405"/>
              <exon start="93210" stop="93090"/>
              <exon start="92242" stop="91959"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371426" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95733" stop="95683"/>
              <exon start="94950" stop="94926"/>
              <exon start="93846" stop="93769"/>
              <exon start="93509" stop="93405"/>
              <exon start="93210" stop="93090"/>
              <exon start="92242" stop="91960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732750" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95729" stop="95683"/>
              <exon start="94950" stop="94926"/>
              <exon start="93846" stop="93769"/>
              <exon start="93509" stop="93405"/>
              <exon start="93210" stop="93090"/>
              <exon start="92242" stop="91963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348851" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95727" stop="95683"/>
              <exon start="94950" stop="94926"/>
              <exon start="93846" stop="93769"/>
              <exon start="93509" stop="93405"/>
              <exon start="93210" stop="93090"/>
              <exon start="92242" stop="91962"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339269" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95722" stop="95683"/>
              <exon start="94950" stop="94926"/>
              <exon start="93846" stop="93769"/>
              <exon start="93509" stop="93405"/>
              <exon start="93210" stop="93090"/>
              <exon start="92242" stop="92154"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283813" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95716" stop="95683"/>
              <exon start="94950" stop="94926"/>
              <exon start="93846" stop="93769"/>
              <exon start="93509" stop="93405"/>
              <exon start="93210" stop="93090"/>
              <exon start="92242" stop="91962"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95702" stop="95683"/>
              <exon start="94950" stop="94926"/>
              <exon start="93846" stop="93769"/>
              <exon start="93509" stop="93405"/>
              <exon start="93210" stop="93090"/>
              <exon start="92242" stop="92134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283750" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94950" stop="94926"/>
              <exon start="93846" stop="93769"/>
              <exon start="93509" stop="93405"/>
              <exon start="93210" stop="93090"/>
              <exon start="92242" stop="92038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243158" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94950" stop="94926"/>
              <exon start="93846" stop="93769"/>
              <exon start="93509" stop="93405"/>
              <exon start="93210" stop="93090"/>
              <exon start="92242" stop="92057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337942" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94950" stop="94926"/>
              <exon start="93846" stop="93769"/>
              <exon start="93509" stop="93405"/>
              <exon start="93210" stop="93090"/>
              <exon start="92242" stop="92083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305415" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94950" stop="94926"/>
              <exon start="93846" stop="93769"/>
              <exon start="93509" stop="93405"/>
              <exon start="93210" stop="93090"/>
              <exon start="92242" stop="92113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200469" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94950" stop="94926"/>
              <exon start="93846" stop="93769"/>
              <exon start="93509" stop="93405"/>
              <exon start="93210" stop="93090"/>
              <exon start="92242" stop="92209"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319024" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94950" stop="94926"/>
              <exon start="93846" stop="93769"/>
              <exon start="93509" stop="93405"/>
              <exon start="93210" stop="93192"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93844" stop="93769"/>
              <exon start="93509" stop="93405"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371052" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93806" stop="93769"/>
              <exon start="93509" stop="93405"/>
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              <exon start="92242" stop="91959"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280282" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93806" stop="93769"/>
              <exon start="93509" stop="93405"/>
              <exon start="93210" stop="93090"/>
              <exon start="92242" stop="92097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286605" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93470" stop="93405"/>
              <exon start="93210" stop="93090"/>
              <exon start="92242" stop="91975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222381" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93469" stop="93405"/>
              <exon start="93210" stop="93090"/>
              <exon start="92242" stop="91969"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283751" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93441" stop="93405"/>
              <exon start="93210" stop="93090"/>
              <exon start="92242" stop="91975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282062" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93190" stop="93090"/>
              <exon start="92242" stop="91974"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227372" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93189" stop="93090"/>
              <exon start="92242" stop="91969"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227442" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92026" stop="91790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238829" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92026" stop="91790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238776" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCCCTCTACCCTCTTTAAACCCTAGCTCCTTTGCCCACTTTTTTTTGTTGCTCTTCAATTTCTTCTGCTTGATCGAAGATGAG : TCGACCAATGGAAGAGGATGCCCCT : CAAGGGAAAAATGAGGAAGAGGAGTTCAATACTGGGCCACTTTCTGTCCTCATGATGAGTGTTAAGAATAACACACAG : GTGCTCATCAACTGTAGGAACAACAGGAAACTTTTTGGTCGTGTGAGAGCATTTGATTGTCACTGCAATATGGTGCTTGAAAATGTTAGAGAAATGTGGACTGAG : GTGCCCAAGACTGGAAAAGGAAAAAAGAAAGCTGTTGCTGTTAACAAAGATAGGTTTATCAGCAAGATGTTCCTTCGGGGAGATTCTGTGATCATTGTCCTCCGAAATCCTAAGTAGAGAG : GTGAATTGGATTTCTGTGCTTTGGAGCAAAACTTGTAAGCAGCTAGGATTTGGACCAGCTCTGTATAACCTTTCGTATTCGGGAATTTGGCTAGGCAGAACACCACCTTTGATTGCTGTAAGACTTGATATAAGATTTTGATGTTCTGGTATGCTATATACTGTTGTCTTCTTCACAAACTTATTGTAGACGTTGGAGTTTTAACGTTCTTGTTGTGTATGTTGAATCCTATGACCAGCTAATATGTACGGTAAATGTCTTGCATTAACTCCAGATACATTGTCCATTTGCGTGCGTGCTTGTCTATTTAACTATGTCTAGTTCTGGCACATGCATTGGTTGGACAAATGCAATATCGAGAGTTTGAAACTGAGAGGCACGGAGATATCAAGAGTAAATTATTACCCTTGGCTGTTATGCTGTGCATCACTAATTTAATTTTGGAAGAAGCGG</gDNA_template>
            <first_frame> F  P  S  T  L  F  K  P  *  L  L  C  P  L  F  F  V  A  L  Q  F  L  L  L  D  R  R  *   : V  D  Q  W  K  R  M  P  L :   K  G  K  M  R  K  R  S  S  I  L  G  H  F  L  S  S  *  *  V  L  R  I  T  H  R :   C  S  S  T  V  G  T  T  G  N  F  L  V  V  *  E  H  L  I  V  T  A  I  W  C  L  K  M  L  E  K  C  G  L  R :   C  P  R  L  E  K  E  K  R  K  L  L  L  L  T  K  I  G  L  S  A  R  C  S  F  G  E  I  L  *  S  L  S  S  E  I  L  S  R  E  :  V  N  W  I  S  V  L  W  S  K  T  C  K  Q  L  G  F  G  P  A  L  Y  N  L  S  Y  S  G  I  W  L  G  R  T  P  P  L  I  A  V  R  L  D  I  R  F  *  C  S  G  M  L  Y  T  V  V  F  F  T  N  L  L  *  T  L  E  F  *  R  S  C  C  V  C  *  I  L  *  P  A  N  M  Y  G  K  C  L  A  L  T  P  D  T  L  S  I  C  V  R  A  C  L  F  N  Y  V  *  F  W  H  M  H  W  L  D  K  C  N  I  E  S  L  K  L  R  G  T  E  I  S  R  V  N  Y  Y  P  W  L  L  C  C  A  S  L  I  *  F  W  K  K  R </first_frame>
            <second_frame>  F  P  L  P  S  L  N  P  S  S  F  A  H  F  F  L  L  L  F  N  F  F  C  L  I  E  D  E  :  S  T  N  G  R  G  C  P   : S  R  E  K  *  G  R  G  V  Q  Y  W  A  T  F  C  P  H  D  E  C  *  E  *  H  T   : G  A  H  Q  L  *  E  Q  Q  E  T  F  W  S  C  E  S  I  *  L  S  L  Q  Y  G  A  *  K  C  *  R  N  V  D  *   : G  A  Q  D  W  K  R  K  K  E  S  C  C  C  *  Q  R  *  V  Y  Q  Q  D  V  P  S  G  R  F  C  D  H  C  P  P  K  S  *  V  E  R :   *  I  G  F  L  C  F  G  A  K  L  V  S  S  *  D  L  D  Q  L  C  I  T  F  R  I  R  E  F  G  *  A  E  H  H  L  *  L  L  *  D  L  I  *  D  F  D  V  L  V  C  Y  I  L  L  S  S  S  Q  T  Y  C  R  R  W  S  F  N  V  L  V  V  Y  V  E  S  Y  D  Q  L  I  C  T  V  N  V  L  H  *  L  Q  I  H  C  P  F  A  C  V  L  V  Y  L  T  M  S  S  S  G  T  C  I  G  W  T  N  A  I  S  R  V  *  N  *  E  A  R  R  Y  Q  E  *  I  I  T  L  G  C  Y  A  V  H  H  *  F  N  F  G  R  S   </second_frame>
            <third_frame>   S  L  Y  P  L  *  T  L  A  P  L  P  T  F  F  C  C  S  S  I  S  S  A  *  S  K  M  S :   R  P  M  E  E  D  A  P  :  Q  G  K  N  E  E  E  E  F  N  T  G  P  L  S  V  L  M  M  S  V  K  N  N  T  Q  :  V  L  I  N  C  R  N  N  R  K  L  F  G  R  V  R  A  F  D  C  H  C  N  M  V  L  E  N  V  R  E  M  W  T  E  :  V  P  K  T  G  K  G  K  K  K  A  V  A  V  N  K  D  R  F  I  S  K  M  F  L  R  G  D  S  V  I  I  V  L  R  N  P  K  *  R   : G  E  L  D  F  C  A  L  E  Q  N  L  *  A  A  R  I  W  T  S  S  V  *  P  F  V  F  G  N  L  A  R  Q  N  T  T  F  D  C  C  K  T  *  Y  K  I  L  M  F  W  Y  A  I  Y  C  C  L  L  H  K  L  I  V  D  V  G  V  L  T  F  L  L  C  M  L  N  P  M  T  S  *  Y  V  R  *  M  S  C  I  N  S  R  Y  I  V  H  L  R  A  C  L  S  I  *  L  C  L  V  L  A  H  A  L  V  G  Q  M  Q  Y  R  E  F  E  T  E  R  H  G  D  I  K  S  K  L  L  P  L  A  V  M  L  C  I  T  N  L  I  L  E  E  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0038L16.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95693" stop="95683"/>
                    <exon start="94950" stop="94926"/>
                    <exon start="93846" stop="93769"/>
                    <exon start="93509" stop="93405"/>
                    <exon start="93210" stop="93094"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>333</number_coding_nucleotides>
                  <number_encoded_amino_acids>111</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKMSRPMEEDAPQGKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLFGRVRAFDCHCNMVLENVREMWTEVPKTGKGKKKAVAVNKDRFISKMFLRGDSVIIVLRNPK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="103644" PGL_stop="98310"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="103644" e_stop="103088"/>
            <exon e_start="102965" e_stop="102875"/>
            <exon e_start="102796" e_stop="102764"/>
            <exon e_start="100340" e_stop="100194"/>
            <exon e_start="99933" e_stop="99803"/>
            <exon e_start="99675" e_stop="99538"/>
            <exon e_start="99413" e_stop="99315"/>
            <exon e_start="99217" e_stop="98310"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.489" acc_prob="0.818" e_score="1.000"/>
          <exon-intron don_prob="0.823" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.935" acc_prob="0.213" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.000" e_score="0.985"/>
          <exon-intron don_prob="0.974" acc_prob="0.947" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.938" e_score="1.000"/>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="103644" e_stop="103088" e_length="557"/>
          </exon>
          <intron i_serial="1" don_prob="0.489" acc_prob="0.818">
            <gDNA_intron_boundary i_start="103087" i_stop="102966" i_length="122"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="102965" e_stop="102875" e_length="91"/>
          </exon>
          <intron i_serial="2" don_prob="0.823" acc_prob="0.999">
            <gDNA_intron_boundary i_start="102874" i_stop="102797" i_length="78"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="102796" e_stop="102764" e_length="33"/>
          </exon>
          <intron i_serial="3" don_prob="0.978" acc_prob="0.996">
            <gDNA_intron_boundary i_start="102763" i_stop="100341" i_length="2423"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="100340" e_stop="100194" e_length="147"/>
          </exon>
          <intron i_serial="4" don_prob="0.935" acc_prob="0.213">
            <gDNA_intron_boundary i_start="100193" i_stop="99934" i_length="260"/>
          </intron>
          <exon e_serial="5" e_score="0.985">
            <gDNA_exon_boundary e_start="99933" e_stop="99803" e_length="131"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.000">
            <gDNA_intron_boundary i_start="99802" i_stop="99676" i_length="127"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="99675" e_stop="99538" e_length="138"/>
          </exon>
          <intron i_serial="6" don_prob="0.974" acc_prob="0.947">
            <gDNA_intron_boundary i_start="99537" i_stop="99414" i_length="124"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="99413" e_stop="99315" e_length="99"/>
          </exon>
          <intron i_serial="7" don_prob="0.989" acc_prob="0.938">
            <gDNA_intron_boundary i_start="99314" i_stop="99218" i_length="97"/>
          </intron>
          <exon e_serial="8" e_score="0.973">
            <gDNA_exon_boundary e_start="99217" e_stop="98310" e_length="908"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103644" stop="103219"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243373" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103292" stop="103088"/>
              <exon start="102965" stop="102875"/>
              <exon start="102796" stop="102764"/>
              <exon start="100340" stop="100202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200441" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103258" stop="103088"/>
              <exon start="102965" stop="102875"/>
              <exon start="102796" stop="102764"/>
              <exon start="100340" stop="100194"/>
              <exon start="99933" stop="99856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267197" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103225" stop="103088"/>
              <exon start="102965" stop="102875"/>
              <exon start="102796" stop="102764"/>
              <exon start="100340" stop="100194"/>
              <exon start="99933" stop="99803"/>
              <exon start="99675" stop="99538"/>
              <exon start="99413" stop="99336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E616512" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103215" stop="103088"/>
              <exon start="102965" stop="102875"/>
              <exon start="102796" stop="102764"/>
              <exon start="100340" stop="100194"/>
              <exon start="99933" stop="99803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446812" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103191" stop="103088"/>
              <exon start="102965" stop="102875"/>
              <exon start="102796" stop="102764"/>
              <exon start="100340" stop="100194"/>
              <exon start="99933" stop="99803"/>
              <exon start="99675" stop="99625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458518" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102961" stop="102875"/>
              <exon start="102796" stop="102764"/>
              <exon start="100340" stop="100194"/>
              <exon start="99933" stop="99803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99909" stop="99803"/>
              <exon start="99675" stop="99538"/>
              <exon start="99413" stop="99315"/>
              <exon start="99217" stop="98826"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450632" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99666" stop="99538"/>
              <exon start="99413" stop="99315"/>
              <exon start="99217" stop="98932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266941" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99663" stop="99538"/>
              <exon start="99413" stop="99315"/>
              <exon start="99217" stop="98737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459113" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99663" stop="99538"/>
              <exon start="99413" stop="99315"/>
              <exon start="99217" stop="98982"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99325" stop="99315"/>
              <exon start="99217" stop="98653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99016" stop="98356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537919" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99006" stop="98675"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305648" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99006" stop="98807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374304" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98635" stop="98310"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230396" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCAACTACAAATCTATTTGAGTATTGAGTTATTTTTACTTCATTCTGAATTAGAGATTTCGAATTTGAGTCTTTTGAATATAAAGAGTTTTTGGATCCAAATCTTTTTGAAAATAAAATATTTCGAGTTTAAATCTTTGTGCGTATACAGTAATTTTTACTTTATTCTAAATTAGAAATTTTAAATTTAAATTTTTTAGTACAAAAAAAAATTAAATTGCAAATTTTAATTTAATCAAACTTCAATATAAATATAAGGTTAAAAATCCCCGAATACACTTCTCCTCATCATATCTTATATATTTATCTATTTATATCTTTCTGTATATATTCCAACTTCTCAGGTCCACTTTATCCCTCTCCCTGTTTTCCAAGAATTCAATATCTTACTATACTTTTATCGTATCAATAATCACTTTTTCTCTGTAAAAATAATTGCATCTATAAGGCCATAATACACAGATCTGTTACTTACCCATGAATGTTGAGTCACATTTCTGAGTTGGGATTTGGTTATTTTTTCTGAAAATATACAATGGGTGTTGAATATCATGAG : GTATTTATAAGGAATTCAAGAGGTGTACAACTCTTCACTTGTAGATGGTTGCCCTTTTCTTCTCCAAAAGCTCTTGTTTTCCTTTGCCATG : GTTATGGCATGGAATGCAGTAGATTCATGAGAG : GTGTTGGGACAAAGCTGGCAGATAATGGATATGCGGTGTTTGGAATAGATTATGAAGGTCATGGACGATCAGCGGGTGCGCGCTGTTACATCAAAAAGTTTGACAACATTGTCAATGACTGCAGCGAGTTTTTCAAGTCAGTTTGTG : CGCAGGAGGAGTATAGAGAGAAAAAACGGTTTCTGTATGGGGAGTCGATGGGAGGGGCCGTGGCTCTTTTAACACACAAGAAGGATCCTTCCTTTTGGCATGGTGCTCTTCTGGTTGCACCTATGTGTAAG : ATATCTGAGAAGGTGAAGCCACATCCTGTGGTTATAAGCTTACTAACTAAAGTGGAGGATGTCATACCAAGATGGAAGATAGTCCCTACGAAGGATGTCATTGATTCGGCCTTCAAGGACCCCGCTAAAAGGGAAGAG : GTACGCGAGAACAAGTTAATTTATCAGGCAAAGCCAAGACTAAAGACAGCTTTGGAAATGCTAAGAACCAGCATGCACCTTGAGGAAAGTTTGCACGAG : GTCACTGTACCATTTTTAGTGTTACATGGGGAAGCAGACATAGTAACTGATCCAGAAATAAGTAAGGCTTTATACGAGCAAGCGAGTAGCAAAGACAAGACTATAAAACTCTATCCAGGAATGTGGCATGGTTTGACATATGGTGAGCCAGAAGAAAACATTGAAATCGTATTTTCAGATATCATCTCGTGGCTTGACAAGCGAAATGGAGAGAATACTGGTGATGCTAGTTTAATCGAGAGATCAGTTTGTCGAGCTACATCTACTCCTCCATATGAGATGCACACAGTTTCTTCACCTGCAACAATGAAAGAAACAAAACCACATAGAACGCGTCCCCAAGCTAATTATCTGTGTGGATTGAAAGGACGTCGAATGCATCATCATTCATCTATGTAGAAACTTGATCGATAGATATGGCGTGTTGCATCTCCTTCATTTGTTCATTCGCGTTACGGTGGCATAAATGTTACTACTATTATTTATCAAGGAAGTGGAAAATAACATGTTTTACACTATGAAGTTTTGTTGGACATATTTGATGATGAAGACGAGGGAAATACTTCAGGTTACTTTACACGGCCAATCCAACTCTTTTAAATTCTTACAAATATAAAATGAAGTTTGAGGTTGATAACCTAGCTTTATTCTTAAATTTAAGCATCCTCATTTGTTGTAGTAGTATCATCACAGAGTGTATTATAAACTCTACGATGGTCATGAATCATCTAGTTTTTTCTAGTTTTTATTTTTTTTATGCTTGTTAATTAGTAGAGGTTTGATGTCAGTAAGGTAAGGCTTAGCCCCCTTGCTTGTACTTTTCTCTTTATTAATAAAACTAGCCCTTGGCACACCTTACCTAGCGGAATTGCTTCAAAGAATAAAAAAAAGATTGTTTTCCAGATATT</gDNA_template>
            <first_frame> F  Q  L  Q  I  Y  L  S  I  E  L  F  L  L  H  S  E  L  E  I  S  N  L  S  L  L  N  I  K  S  F  W  I  Q  I  F  L  K  I  K  Y  F  E  F  K  S  L  C  V  Y  S  N  F  Y  F  I  L  N  *  K  F  *  I  *  I  F  *  Y  K  K  K  L  N  C  K  F  *  F  N  Q  T  S  I  *  I  *  G  *  K  S  P  N  T  L  L  L  I  I  S  Y  I  F  I  Y  L  Y  L  S  V  Y  I  P  T  S  Q  V  H  F  I  P  L  P  V  F  Q  E  F  N  I  L  L  Y  F  Y  R  I  N  N  H  F  F  S  V  K  I  I  A  S  I  R  P  *  Y  T  D  L  L  L  T  H  E  C  *  V  T  F  L  S  W  D  L  V  I  F  S  E  N  I  Q  W  V  L  N  I  M  R :   Y  L  *  G  I  Q  E  V  Y  N  S  S  L  V  D  G  C  P  F  L  L  Q  K  L  L  F  S  F  A  M  :  V  M  A  W  N  A  V  D  S  *  E  :  V  L  G  Q  S  W  Q  I  M  D  M  R  C  L  E  *  I  M  K  V  M  D  D  Q  R  V  R  A  V  T  S  K  S  L  T  T  L  S  M  T  A  A  S  F  S  S  Q  F  V  :  R  R  R  S  I  E  R  K  N  G  F  C  M  G  S  R  W  E  G  P  W  L  F  *  H  T  R  R  I  L  P  F  G  M  V  L  F  W  L  H  L  C  V  R :   Y  L  R  R  *  S  H  I  L  W  L  *  A  Y  *  L  K  W  R  M  S  Y  Q  D  G  R  *  S  L  R  R  M  S  L  I  R  P  S  R  T  P  L  K  G  K  R :   Y  A  R  T  S  *  F  I  R  Q  S  Q  D  *  R  Q  L  W  K  C  *  E  P  A  C  T  L  R  K  V  C  T  R :   S  L  Y  H  F  *  C  Y  M  G  K  Q  T  *  *  L  I  Q  K  *  V  R  L  Y  T  S  K  R  V  A  K  T  R  L  *  N  S  I  Q  E  C  G  M  V  *  H  M  V  S  Q  K  K  T  L  K  S  Y  F  Q  I  S  S  R  G  L  T  S  E  M  E  R  I  L  V  M  L  V  *  S  R  D  Q  F  V  E  L  H  L  L  L  H  M  R  C  T  Q  F  L  H  L  Q  Q  *  K  K  Q  N  H  I  E  R  V  P  K  L  I  I  C  V  D  *  K  D  V  E  C  I  I  I  H  L  C  R  N  L  I  D  R  Y  G  V  L  H  L  L  H  L  F  I  R  V  T  V  A  *  M  L  L  L  L  F  I  K  E  V  E  N  N  M  F  Y  T  M  K  F  C  W  T  Y  L  M  M  K  T  R  E  I  L  Q  V  T  L  H  G  Q  S  N  S  F  K  F  L  Q  I  *  N  E  V  *  G  *  *  P  S  F  I  L  K  F  K  H  P  H  L  L  *  *  Y  H  H  R  V  Y  Y  K  L  Y  D  G  H  E  S  S  S  F  F  *  F  L  F  F  L  C  L  L  I  S  R  G  L  M  S  V  R  *  G  L  A  P  L  L  V  L  F  S  L  L  I  K  L  A  L  G  T  P  Y  L  A  E  L  L  Q  R  I  K  K  R  L  F  S  R  Y  </first_frame>
            <second_frame>  F  N  Y  K  S  I  *  V  L  S  Y  F  Y  F  I  L  N  *  R  F  R  I  *  V  F  *  I  *  R  V  F  G  S  K  S  F  *  K  *  N  I  S  S  L  N  L  C  A  Y  T  V  I  F  T  L  F  *  I  R  N  F  K  F  K  F  F  S  T  K  K  N  *  I  A  N  F  N  L  I  K  L  Q  Y  K  Y  K  V  K  N  P  R  I  H  F  S  S  S  Y  L  I  Y  L  S  I  Y  I  F  L  Y  I  F  Q  L  L  R  S  T  L  S  L  S  L  F  S  K  N  S  I  S  Y  Y  T  F  I  V  S  I  I  T  F  S  L  *  K  *  L  H  L  *  G  H  N  T  Q  I  C  Y  L  P  M  N  V  E  S  H  F  *  V  G  I  W  L  F  F  L  K  I  Y  N  G  C  *  I  S  *   : G  I  Y  K  E  F  K  R  C  T  T  L  H  L  *  M  V  A  L  F  F  S  K  S  S  C  F  P  L  P  W :   L  W  H  G  M  Q  *  I  H  E  R :   C  W  D  K  A  G  R  *  W  I  C  G  V  W  N  R  L  *  R  S  W  T  I  S  G  C  A  L  L  H  Q  K  V  *  Q  H  C  Q  *  L  Q  R  V  F  Q  V  S  L  C :   A  G  G  V  *  R  E  K  T  V  S  V  W  G  V  D  G  R  G  R  G  S  F  N  T  Q  E  G  S  F  L  L  A  W  C  S  S  G  C  T  Y  V  *   : D  I  *  E  G  E  A  T  S  C  G  Y  K  L  T  N  *  S  G  G  C  H  T  K  M  E  D  S  P  Y  E  G  C  H  *  F  G  L  Q  G  P  R  *  K  G  R   : G  T  R  E  Q  V  N  L  S  G  K  A  K  T  K  D  S  F  G  N  A  K  N  Q  H  A  P  *  G  K  F  A  R   : G  H  C  T  I  F  S  V  T  W  G  S  R  H  S  N  *  S  R  N  K  *  G  F  I  R  A  S  E  *  Q  R  Q  D  Y  K  T  L  S  R  N  V  A  W  F  D  I  W  *  A  R  R  K  H  *  N  R  I  F  R  Y  H  L  V  A  *  Q  A  K  W  R  E  Y  W  *  C  *  F  N  R  E  I  S  L  S  S  Y  I  Y  S  S  I  *  D  A  H  S  F  F  T  C  N  N  E  R  N  K  T  T  *  N  A  S  P  S  *  L  S  V  W  I  E  R  T  S  N  A  S  S  F  I  Y  V  E  T  *  S  I  D  M  A  C  C  I  S  F  I  C  S  F  A  L  R  W  H  K  C  Y  Y  Y  Y  L  S  R  K  W  K  I  T  C  F  T  L  *  S  F  V  G  H  I  *  *  *  R  R  G  K  Y  F  R  L  L  Y  T  A  N  P  T  L  L  N  S  Y  K  Y  K  M  K  F  E  V  D  N  L  A  L  F  L  N  L  S  I  L  I  C  C  S  S  I  I  T  E  C  I  I  N  S  T  M  V  M  N  H  L  V  F  S  S  F  Y  F  F  Y  A  C  *  L  V  E  V  *  C  Q  *  G  K  A  *  P  P  C  L  Y  F  S  L  Y  *  *  N  *  P  L  A  H  L  T  *  R  N  C  F  K  E  *  K  K  D  C  F  P  D  I </second_frame>
            <third_frame>   S  T  T  N  L  F  E  Y  *  V  I  F  T  S  F  *  I  R  D  F  E  F  E  S  F  E  Y  K  E  F  L  D  P  N  L  F  E  N  K  I  F  R  V  *  I  F  V  R  I  Q  *  F  L  L  Y  S  K  L  E  I  L  N  L  N  F  L  V  Q  K  K  I  K  L  Q  I  L  I  *  S  N  F  N  I  N  I  R  L  K  I  P  E  Y  T  S  P  H  H  I  L  Y  I  Y  L  F  I  S  F  C  I  Y  S  N  F  S  G  P  L  Y  P  S  P  C  F  P  R  I  Q  Y  L  T  I  L  L  S  Y  Q  *  S  L  F  L  C  K  N  N  C  I  Y  K  A  I  I  H  R  S  V  T  Y  P  *  M  L  S  H  I  S  E  L  G  F  G  Y  F  F  *  K  Y  T  M  G  V  E  Y  H  E  :  V  F  I  R  N  S  R  G  V  Q  L  F  T  C  R  W  L  P  F  S  S  P  K  A  L  V  F  L  C  H   : G  Y  G  M  E  C  S  R  F  M  R   : G  V  G  T  K  L  A  D  N  G  Y  A  V  F  G  I  D  Y  E  G  H  G  R  S  A  G  A  R  C  Y  I  K  K  F  D  N  I  V  N  D  C  S  E  F  F  K  S  V  C   : A  Q  E  E  Y  R  E  K  K  R  F  L  Y  G  E  S  M  G  G  A  V  A  L  L  T  H  K  K  D  P  S  F  W  H  G  A  L  L  V  A  P  M  C  K  :  I  S  E  K  V  K  P  H  P  V  V  I  S  L  L  T  K  V  E  D  V  I  P  R  W  K  I  V  P  T  K  D  V  I  D  S  A  F  K  D  P  A  K  R  E  E  :  V  R  E  N  K  L  I  Y  Q  A  K  P  R  L  K  T  A  L  E  M  L  R  T  S  M  H  L  E  E  S  L  H  E  :  V  T  V  P  F  L  V  L  H  G  E  A  D  I  V  T  D  P  E  I  S  K  A  L  Y  E  Q  A  S  S  K  D  K  T  I  K  L  Y  P  G  M  W  H  G  L  T  Y  G  E  P  E  E  N  I  E  I  V  F  S  D  I  I  S  W  L  D  K  R  N  G  E  N  T  G  D  A  S  L  I  E  R  S  V  C  R  A  T  S  T  P  P  Y  E  M  H  T  V  S  S  P  A  T  M  K  E  T  K  P  H  R  T  R  P  Q  A  N  Y  L  C  G  L  K  G  R  R  M  H  H  H  S  S  M  *  K  L  D  R  *  I  W  R  V  A  S  P  S  F  V  H  S  R  Y  G  G  I  N  V  T  T  I  I  Y  Q  G  S  G  K  *  H  V  L  H  Y  E  V  L  L  D  I  F  D  D  E  D  E  G  N  T  S  G  Y  F  T  R  P  I  Q  L  F  *  I  L  T  N  I  K  *  S  L  R  L  I  T  *  L  Y  S  *  I  *  A  S  S  F  V  V  V  V  S  S  Q  S  V  L  *  T  L  R  W  S  *  I  I  *  F  F  L  V  F  I  F  F  M  L  V  N  *  *  R  F  D  V  S  K  V  R  L  S  P  L  A  C  T  F  L  F  I  N  K  T  S  P  W  H  T  L  P  S  G  I  A  S  K  N  K  K  K  I  V  F  Q  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0038L16.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103117" stop="103088"/>
                    <exon start="102965" stop="102875"/>
                    <exon start="102796" stop="102764"/>
                    <exon start="100340" stop="100194"/>
                    <exon start="99933" stop="99803"/>
                    <exon start="99675" stop="99538"/>
                    <exon start="99413" stop="99315"/>
                    <exon start="99217" stop="98819"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1065</number_coding_nucleotides>
                  <number_encoded_amino_acids>355</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KYTMGVEYHEVFIRNSRGVQLFTCRWLPFSSPKALVFLCHGYGMECSRFMRGVGTKLADNGYAVFGIDYEGHGRSAGARCYIKKFDNIVNDCSEFFKSVCAQEEYREKKRFLYGESMGGAVALLTHKKDPSFWHGALLVAPMCKISEKVKPHPVVISLLTKVEDVIPRWKIVPTKDVIDSAFKDPAKREEVRENKLIYQAKPRLKTALEMLRTSMHLEESLHEVTVPFLVLHGEADIVTDPEISKALYEQASSKDKTIKLYPGMWHGLTYGEPEENIEIVFSDIISWLDKRNGENTGDASLIERSVCRATSTPPYEMHTVSSPATMKETKPHRTRPQANYLCGLKGRRMHHHSSM*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0038L16.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98669" stop="98451"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRGKYFRLLYTANPTLLNSYKYKMKFEVDNLALFLNLSILICCSSIITECIINSTMVMNHLVFSSFYFFYAC*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0038L16.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103427" stop="103215"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IANFNLIKLQYKYKVKNPRIHFSSSYLIYLSIYIFLYIFQLLRSTLSLSLFSKNSISYYTFIVSIITFSL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="101876" e_stop="101310"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="101876" e_stop="101310" e_length="567"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101876" stop="101395"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537921" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101875" stop="101310"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265769" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCCAACTGGCTTGCTTGAGATTGAAGTGGAGTTTCATGTTAGCTATCTTGGCAGTATGTGCATTATGTTTATCTGGTTGTGGGATATTATTATACAAGAATATCTTTTTTATAGGGCACAATTATTGGTGATATATAATAATGCAATTGTTAGGAGCTAGTAGTTAAAAATGCAACGAAAAATGGTTCTCAAATTGAATGCCAGACTGAAAACTCACCTAACATACTGATCCTCTCATACTGAAGGTACTATAGATTTGCTGAAACAAAGTAATTTTTACCCTTGAATAACATCCTTATATGGTTTACAGCTGCATGATTAGTCTGTTTCTTGTCCTTTTTTGGTTAATTTGCTAATTAACAGCTATGTTGGAACTTCATTGTTTGCCTACTAAAATAAGGAGGATTAATGGTTTGCTGGTAGGTTGGTTGACTATTGAGAAACATAATAAAATTAAAAGTCCTATCTTGGTAGTTTGATAGATTAATTAGGTTAGCAAATTAGTTGGGCCCTATAAGTAACCTCAATTAAAGATTGCTTCACACACCAAAATTTGTGGGACACTTT</gDNA_template>
            <first_frame> A  N  W  L  A  *  D  *  S  G  V  S  C  *  L  S  W  Q  Y  V  H  Y  V  Y  L  V  V  G  Y  Y  Y  T  R  I  S  F  L  *  G  T  I  I  G  D  I  *  *  C  N  C  *  E  L  V  V  K  N  A  T  K  N  G  S  Q  I  E  C  Q  T  E  N  S  P  N  I  L  I  L  S  Y  *  R  Y  Y  R  F  A  E  T  K  *  F  L  P  L  N  N  I  L  I  W  F  T  A  A  *  L  V  C  F  L  S  F  F  G  *  F  A  N  *  Q  L  C  W  N  F  I  V  C  L  L  K  *  G  G  L  M  V  C  W  *  V  G  *  L  L  R  N  I  I  K  L  K  V  L  S  W  *  F  D  R  L  I  R  L  A  N  *  L  G  P  I  S  N  L  N  *  R  L  L  H  T  P  K  F  V  G  H  F </first_frame>
            <second_frame>  P  T  G  L  L  E  I  E  V  E  F  H  V  S  Y  L  G  S  M  C  I  M  F  I  W  L  W  D  I  I  I  Q  E  Y  L  F  Y  R  A  Q  L  L  V  I  Y  N  N  A  I  V  R  S  *  *  L  K  M  Q  R  K  M  V  L  K  L  N  A  R  L  K  T  H  L  T  Y  *  S  S  H  T  E  G  T  I  D  L  L  K  Q  S  N  F  Y  P  *  I  T  S  L  Y  G  L  Q  L  H  D  *  S  V  S  C  P  F  L  V  N  L  L  I  N  S  Y  V  G  T  S  L  F  A  Y  *  N  K  E  D  *  W  F  A  G  R  L  V  D  Y  *  E  T  *  *  N  *  K  S  Y  L  G  S  L  I  D  *  L  G  *  Q  I  S  W  A  L  *  V  T  S  I  K  D  C  F  T  H  Q  N  L  W  D  T   </second_frame>
            <third_frame>   Q  L  A  C  L  R  L  K  W  S  F  M  L  A  I  L  A  V  C  A  L  C  L  S  G  C  G  I  L  L  Y  K  N  I  F  F  I  G  H  N  Y  W  *  Y  I  I  M  Q  L  L  G  A  S  S  *  K  C  N  E  K  W  F  S  N  *  M  P  D  *  K  L  T  *  H  T  D  P  L  I  L  K  V  L  *  I  C  *  N  K  V  I  F  T  L  E  *  H  P  Y  M  V  Y  S  C  M  I  S  L  F  L  V  L  F  W  L  I  C  *  L  T  A  M  L  E  L  H  C  L  P  T  K  I  R  R  I  N  G  L  L  V  G  W  L  T  I  E  K  H  N  K  I  K  S  P  I  L  V  V  *  *  I  N  *  V  S  K  L  V  G  P  Y  K  *  P  Q  L  K  I  A  S  H  T  K  I  C  G  T  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0038L16.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="107976" PGL_stop="110940"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="107976" e_stop="108079"/>
            <exon e_start="108160" e_stop="108428"/>
            <exon e_start="110462" e_stop="110940"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.876" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="107976" e_stop="108079" e_length="104"/>
          </exon>
          <intron i_serial="1" don_prob="0.876" acc_prob="0.992">
            <gDNA_intron_boundary i_start="108080" i_stop="108159" i_length="80"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="108160" e_stop="108428" e_length="269"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="108429" i_stop="110461" i_length="2033"/>
          </intron>
          <exon e_serial="3" e_score="0.973">
            <gDNA_exon_boundary e_start="110462" e_stop="110940" e_length="479"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107976" stop="108079"/>
              <exon start="108160" stop="108428"/>
              <exon start="110462" stop="110851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724659" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108045" stop="108079"/>
              <exon start="108160" stop="108428"/>
              <exon start="110462" stop="110676"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108065" stop="108079"/>
              <exon start="108160" stop="108428"/>
              <exon start="110462" stop="110781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272167" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108066" stop="108079"/>
              <exon start="108160" stop="108428"/>
              <exon start="110462" stop="110940"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703764" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108068" stop="108079"/>
              <exon start="108160" stop="108428"/>
              <exon start="110462" stop="110739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E594909" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108072" stop="108079"/>
              <exon start="108160" stop="108428"/>
              <exon start="110462" stop="110749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336142" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108075" stop="108079"/>
              <exon start="108160" stop="108428"/>
              <exon start="110462" stop="110849"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E619725" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108075" stop="108079"/>
              <exon start="108160" stop="108428"/>
              <exon start="110462" stop="110801"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729939" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108075" stop="108079"/>
              <exon start="108160" stop="108428"/>
              <exon start="110462" stop="110801"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733323" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108078" stop="108079"/>
              <exon start="108160" stop="108428"/>
              <exon start="110462" stop="110700"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357774" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108162" stop="108428"/>
              <exon start="110462" stop="110863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371903" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108163" stop="108428"/>
              <exon start="110462" stop="110677"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285777" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108193" stop="108428"/>
              <exon start="110462" stop="110859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715201" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108202" stop="108428"/>
              <exon start="110462" stop="110744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335016" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108238" stop="108428"/>
              <exon start="110462" stop="110744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284720" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108297" stop="108428"/>
              <exon start="110462" stop="110857"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551726" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108365" stop="108428"/>
              <exon start="110462" stop="110758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219375" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108368" stop="108428"/>
              <exon start="110462" stop="110831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352396" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108373" stop="108428"/>
              <exon start="110462" stop="110854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551822" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108373" stop="108428"/>
              <exon start="110462" stop="110854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553003" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGTCGGGGCGACGGGTCAAATAGGAAGAGGAACGAGGAAAACCCTAATTAAATATAATCATCCACTTCCATACACTCGCAGTCGGCCGCCGTCGAATTTCTCCC : TATTTGAATAGCAGCAGAAGAGAAATCAAGAGCGTAAAGATGAGCCGAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATCGACTGTTCGAAGCCAGTGGAGGACAGTATTATGGAGATTGCTTCTCTTGACAAGTTCCTCCAAGAGAGAATTAAGGTTGGTGGAAAAGCTGGTGCACTTGGAGATTCCGTTACTGTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAG : GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATTATTGATTTTTTGTCCCCTTATCAGTAAAAGAAAACGTTACTTTGATACACTTTGGTTTGTTCATCTCTGGGGTCAAGTTTTTGCAAGGCATCAATTTCTCTGTATTGCCTTTTCCCTCTTGATGATCACATGTAATTTATAGAGTTTATCTTTTGTTGTTCTTGTGTCTTTCTTTTAACCACTGCGCCATTGATGATTTCCTTCAATCCTTGAAAAGATCGATTGAGACTACCTTCATTG</gDNA_template>
            <first_frame> G  R  G  D  G  S  N  R  K  R  N  E  E  N  P  N  *  I  *  S  S  T  S  I  H  S  Q  S  A  A  V  E  F  L  P :   I  *  I  A  A  E  E  K  S  R  A  *  R  *  A  E  Q  Q  Q  Q  *  R  A  G  R  R  R  G  Q  A  S  S  S  T  V  R  S  Q  W  R  T  V  L  W  R  L  L  L  L  T  S  S  S  K  R  E  L  R  L  V  E  K  L  V  H  L  E  I  P  L  L  S  L  V  I  R  I  K  S  P  S  L  A  T  P  L  F  P  R   : G  T  S  N  T  L  S  K  S  T  *  R  K  T  T  L  G  I  G  L  G  *  L  L  P  T  R  T  G  M  F  M  S  C  A  T  S  T  L  P  R  M  K  Q  M  K  K  I  K  H  V  *  S  M  S  L  L  S  S  Y  F  E  P  Y  I  I  C  L  S  Y  *  *  A  V  S  S  H  F  Q  I  I  D  F  L  S  P  Y  Q  *  K  K  T  L  L  *  Y  T  L  V  C  S  S  L  G  S  S  F  C  K  A  S  I  S  L  Y  C  L  F  P  L  D  D  H  M  *  F  I  E  F  I  F  C  C  S  C  V  F  L  L  T  T  A  P  L  M  I  S  F  N  P  *  K  D  R  L  R  L  P  S  L </first_frame>
            <second_frame>  V  G  A  T  G  Q  I  G  R  G  T  R  K  T  L  I  K  Y  N  H  P  L  P  Y  T  R  S  R  P  P  S  N  F  S   : L  F  E  *  Q  Q  K  R  N  Q  E  R  K  D  E  P  S  S  S  S  S  E  G  R  E  E  E  G  G  K  L  R  H  R  L  F  E  A  S  G  G  Q  Y  Y  G  D  C  F  S  *  Q  V  P  P  R  E  N  *  G  W  W  K  S  W  C  T  W  R  F  R  Y  C  H  S  *  *  E  *  N  H  R  H  L  Q  L  H  F  F  Q  E  :  V  P  Q  I  P  C  Q  K  V  L  E  E  K  Q  R  *  G  L  A  *  G  D  C  F  Q  Q  G  Q  E  C  L  *  V  A  L  L  Q  H  C  R  E  *  S  R  *  R  R  L  N  M  S  S  Q  C  P  F  Y  L  L  I  L  N  L  I  S  S  V  *  V  I  N  E  P  Y  L  L  I  S  R  L  L  I  F  C  P  L  I  S  K  R  K  R  Y  F  D  T  L  W  F  V  H  L  W  G  Q  V  F  A  R  H  Q  F  L  C  I  A  F  S  L  L  M  I  T  C  N  L  *  S  L  S  F  V  V  L  V  S  F  F  *  P  L  R  H  *  *  F  P  S  I  L  E  K  I  D  *  D  Y  L  H   </second_frame>
            <third_frame>   S  G  R  R  V  K  *  E  E  E  R  G  K  P  *  L  N  I  I  I  H  F  H  T  L  A  V  G  R  R  R  I  S  P  :  Y  L  N  S  S  R  R  E  I  K  S  V  K  M  S  R  A  A  A  A  V  K  G  G  K  K  K  G  A  S  F  V  I  D  C  S  K  P  V  E  D  S  I  M  E  I  A  S  L  D  K  F  L  Q  E  R  I  K  V  G  G  K  A  G  A  L  G  D  S  V  T  V  T  R  D  K  N  K  I  T  V  T  C  N  S  T  F  S  K  R :   Y  L  K  Y  L  V  K  K  Y  L  K  K  N  N  V  R  D  W  L  R  V  I  A  S  N  K  D  R  N  V  Y  E  L  R  Y  F  N  I  A  E  N  E  A  D  E  E  D  *  T  C  L  V  N  V  P  F  I  F  L  F  *  T  L  Y  H  L  F  E  L  L  M  S  R  I  F  S  F  P  D  Y  *  F  F  V  P  L  S  V  K  E  N  V  T  L  I  H  F  G  L  F  I  S  G  V  K  F  L  Q  G  I  N  F  S  V  L  P  F  P  S  *  *  S  H  V  I  Y  R  V  Y  L  L  L  F  L  C  L  S  F  N  H  C  A  I  D  D  F  L  Q  S  L  K  R  S  I  E  T  T  F  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0038L16.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108023" stop="108079"/>
                    <exon start="108160" stop="108428"/>
                    <exon start="110462" stop="110606"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>468</number_coding_nucleotides>
                  <number_encoded_amino_acids>156</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LNIIIHFHTLAVGRRRISPYLNSSRREIKSVKMSRAAAAVKGGKKKGASFVIDCSKPVEDSIMEIASLDKFLQERIKVGGKAGALGDSVTVTRDKNKITVTCNSTFSKRYLKYLVKKYLKKNNVRDWLRVIASNKDRNVYELRYFNIAENEADEED*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="109651" e_stop="110304"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="109651" e_stop="110304" e_length="654"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109651" stop="110304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215051" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGCATTAGCTAGATTGTTTGGCTCCTCCCACTTCTCAGTGAAGTAGATTCTTAAGTAGGCGGTTGTTGATGAGACCAATTAGACTGCAACCTAGCCTTTCACTTGTGTCCATTAGTTTGCGTCAAGTGCAATTTTGTTGATTTCATCTTTTACATCCATAATCACACAGAATAGTACACTTGGATTATGTCAAATTACATGTGAAATAGGCTTGGAAGAACTAATATGTATTAAGTTTGTAACTTGAAAGAGATAGGTAACTAACATGTAAGCAGGCTTAGTTATAGGTAATTGATAATATTGATCATTATAGATGCTCTTGCTAACTGAAACATCCTTCAGGGCGTGTAAAGCATATTTTCATGTATTTTTTGTTGGGTTCTGAAGAAAGTCTTCATTTTTTATGTAAGTTTGATGCAGCTGAGTAGAATCTATAGTGGTATTCTTGTTTCATCTGATGTATGTTTCTAAGCTTGTTCTGGAAGTGACATCAACCACTTATTAGCATCACCATTTACCTAGCACATTTTTGGTTCAAGTGATAGTCCAAAGGCTACTTGTAAAAGAAACTGATACTCTAAAGAGAACCAAATGTCCAACATATTTATCATATTACTTTTTTTTTTTTGCAATTTCTGTATGCGCGATTAATG</gDNA_template>
            <first_frame> E  H  *  L  D  C  L  A  P  P  T  S  Q  *  S  R  F  L  S  R  R  L  L  M  R  P  I  R  L  Q  P  S  L  S  L  V  S  I  S  L  R  Q  V  Q  F  C  *  F  H  L  L  H  P  *  S  H  R  I  V  H  L  D  Y  V  K  L  H  V  K  *  A  W  K  N  *  Y  V  L  S  L  *  L  E  R  D  R  *  L  T  C  K  Q  A  *  L  *  V  I  D  N  I  D  H  Y  R  C  S  C  *  L  K  H  P  S  G  R  V  K  H  I  F  M  Y  F  L  L  G  S  E  E  S  L  H  F  L  C  K  F  D  A  A  E  *  N  L  *  W  Y  S  C  F  I  *  C  M  F  L  S  L  F  W  K  *  H  Q  P  L  I  S  I  T  I  Y  L  A  H  F  W  F  K  *  *  S  K  G  Y  L  *  K  K  L  I  L  *  R  E  P  N  V  Q  H  I  Y  H  I  T  F  F  F  L  Q  F  L  Y  A  R  L  M </first_frame>
            <second_frame>  S  I  S  *  I  V  W  L  L  P  L  L  S  E  V  D  S  *  V  G  G  C  *  *  D  Q  L  D  C  N  L  A  F  H  L  C  P  L  V  C  V  K  C  N  F  V  D  F  I  F  Y  I  H  N  H  T  E  *  Y  T  W  I  M  S  N  Y  M  *  N  R  L  G  R  T  N  M  Y  *  V  C  N  L  K  E  I  G  N  *  H  V  S  R  L  S  Y  R  *  L  I  I  L  I  I  I  D  A  L  A  N  *  N  I  L  Q  G  V  *  S  I  F  S  C  I  F  C  W  V  L  K  K  V  F  I  F  Y  V  S  L  M  Q  L  S  R  I  Y  S  G  I  L  V  S  S  D  V  C  F  *  A  C  S  G  S  D  I  N  H  L  L  A  S  P  F  T  *  H  I  F  G  S  S  D  S  P  K  A  T  C  K  R  N  *  Y  S  K  E  N  Q  M  S  N  I  F  I  I  L  L  F  F  F  C  N  F  C  M  R  D  *   </second_frame>
            <third_frame>   A  L  A  R  L  F  G  S  S  H  F  S  V  K  *  I  L  K  *  A  V  V  D  E  T  N  *  T  A  T  *  P  F  T  C  V  H  *  F  A  S  S  A  I  L  L  I  S  S  F  T  S  I  I  T  Q  N  S  T  L  G  L  C  Q  I  T  C  E  I  G  L  E  E  L  I  C  I  K  F  V  T  *  K  R  *  V  T  N  M  *  A  G  L  V  I  G  N  *  *  Y  *  S  L  *  M  L  L  L  T  E  T  S  F  R  A  C  K  A  Y  F  H  V  F  F  V  G  F  *  R  K  S  S  F  F  M  *  V  *  C  S  *  V  E  S  I  V  V  F  L  F  H  L  M  Y  V  S  K  L  V  L  E  V  T  S  T  T  Y  *  H  H  H  L  P  S  T  F  L  V  Q  V  I  V  Q  R  L  L  V  K  E  T  D  T  L  K  R  T  K  C  P  T  Y  L  S  Y  Y  F  F  F  F  A  I  S  V  C  A  I  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0038L16.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="111472" PGL_stop="115029"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="111529" e_stop="111615"/>
            <exon e_start="111704" e_stop="111963"/>
            <exon e_start="114457" e_stop="114827"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.917" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="111529" e_stop="111615" e_length="87"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.917">
            <gDNA_intron_boundary i_start="111616" i_stop="111703" i_length="88"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="111704" e_stop="111963" e_length="260"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="111964" i_stop="114456" i_length="2493"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="114457" e_stop="114827" e_length="371"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111529" stop="111615"/>
              <exon start="111704" stop="111963"/>
              <exon start="114457" stop="114578"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E591339" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111556" stop="111615"/>
              <exon start="111704" stop="111963"/>
              <exon start="114457" stop="114606"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276642" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111561" stop="111615"/>
              <exon start="111704" stop="111963"/>
              <exon start="114457" stop="114802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722007" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111570" stop="111615"/>
              <exon start="111704" stop="111963"/>
              <exon start="114457" stop="114760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E571534" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111580" stop="111615"/>
              <exon start="111704" stop="111963"/>
              <exon start="114457" stop="114827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345647" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111586" stop="111615"/>
              <exon start="111704" stop="111963"/>
              <exon start="114457" stop="114823"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458920" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111589" stop="111615"/>
              <exon start="111704" stop="111963"/>
              <exon start="114457" stop="114800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746042" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111602" stop="111615"/>
              <exon start="111704" stop="111963"/>
              <exon start="114457" stop="114755"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306494" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111710" stop="111963"/>
              <exon start="114457" stop="114811"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353870" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCAAGTAGGAACGAAGGAAAACCCTAATTTAACAGAGTCACCACTTCCATACACTCACACTAGGCCGTGGACGTCGAGTTTCATCCT : CAGAAGAGAAATACAGAGAGTGTAAAGATGAGCCGAGCAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATTGACTGTTCGAAGCCGGTAGAAGACAGTATCATGGAGATTGCTTCTCTTGACAAGTTCCTTCAAGAGAGGATTAAGGTTGGTGGAAAAGCTGGTGCTCTTGGGGATTCCGTTACTGTTACTCGTGACAAGAACAAGATCACCGTCACCTGCAACTCAACTTTTTCCAAGAG : GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAATAACGTCAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTACGAATTGCGCTACTTCAACATTGCTGAGAATGAAGCAGATGAAGAAGATTAAACATGACCATTCAATGTCTCTCTTTATCTTCTTTCTTTAGTCGGCCTTCACTTTTTGATCCTTGTATCATCACTAATGAATCCTGTCTTCTCATTTCTAGATTTTGTTTTTGCAGTTTGCTTATCAGTAAAAGAAAACATTACATCGATACTTTGGTTTGTCTATCTTTGGGGATAATTATGAAAATGTCAATTTATCTGTATTGCCTTTCTCCTCTGGATGATCT</gDNA_template>
            <first_frame> A  S  R  N  E  G  K  P  *  F  N  R  V  T  T  S  I  H  S  H  *  A  V  D  V  E  F  H  P  :  Q  K  R  N  T  E  S  V  K  M  S  R  A  A  A  A  A  V  K  G  G  K  K  K  G  A  S  F  V  I  D  C  S  K  P  V  E  D  S  I  M  E  I  A  S  L  D  K  F  L  Q  E  R  I  K  V  G  G  K  A  G  A  L  G  D  S  V  T  V  T  R  D  K  N  K  I  T  V  T  C  N  S  T  F  S  K  R :   Y  L  K  Y  L  V  K  K  Y  L  K  K  N  N  V  R  D  W  L  R  V  I  A  S  N  K  D  R  N  V  Y  E  L  R  Y  F  N  I  A  E  N  E  A  D  E  E  D  *  T  *  P  F  N  V  S  L  Y  L  L  S  L  V  G  L  H  F  L  I  L  V  S  S  L  M  N  P  V  F  S  F  L  D  F  V  F  A  V  C  L  S  V  K  E  N  I  T  S  I  L  W  F  V  Y  L  W  G  *  L  *  K  C  Q  F  I  C  I  A  F  L  L  W  M  I  </first_frame>
            <second_frame>  Q  V  G  T  K  E  N  P  N  L  T  E  S  P  L  P  Y  T  H  T  R  P  W  T  S  S  F  I  L :   R  R  E  I  Q  R  V  *  R  *  A  E  Q  Q  Q  Q  Q  *  R  A  G  R  R  R  G  Q  A  S  S  L  T  V  R  S  R  *  K  T  V  S  W  R  L  L  L  L  T  S  S  F  K  R  G  L  R  L  V  E  K  L  V  L  L  G  I  P  L  L  L  L  V  T  R  T  R  S  P  S  P  A  T  Q  L  F  P  R   : G  T  S  N  T  L  S  K  S  T  *  R  K  I  T  S  G  I  G  L  G  *  L  L  P  T  R  T  G  M  F  T  N  C  A  T  S  T  L  L  R  M  K  Q  M  K  K  I  K  H  D  H  S  M  S  L  F  I  F  F  L  *  S  A  F  T  F  *  S  L  Y  H  H  *  *  I  L  S  S  H  F  *  I  L  F  L  Q  F  A  Y  Q  *  K  K  T  L  H  R  Y  F  G  L  S  I  F  G  D  N  Y  E  N  V  N  L  S  V  L  P  F  S  S  G  *  S </second_frame>
            <third_frame>   K  *  E  R  R  K  T  L  I  *  Q  S  H  H  F  H  T  L  T  L  G  R  G  R  R  V  S  S   : S  E  E  K  Y  R  E  C  K  D  E  P  S  S  S  S  S  S  E  G  R  E  E  E  G  G  K  L  R  H  *  L  F  E  A  G  R  R  Q  Y  H  G  D  C  F  S  *  Q  V  P  S  R  E  D  *  G  W  W  K  S  W  C  S  W  G  F  R  Y  C  Y  S  *  Q  E  Q  D  H  R  H  L  Q  L  N  F  F  Q  E  :  V  P  Q  I  P  C  Q  K  V  L  E  E  K  *  R  Q  G  L  A  *  G  D  C  F  Q  Q  G  Q  E  C  L  R  I  A  L  L  Q  H  C  *  E  *  S  R  *  R  R  L  N  M  T  I  Q  C  L  S  L  S  S  F  F  S  R  P  S  L  F  D  P  C  I  I  T  N  E  S  C  L  L  I  S  R  F  C  F  C  S  L  L  I  S  K  R  K  H  Y  I  D  T  L  V  C  L  S  L  G  I  I  M  K  M  S  I  Y  L  Y  C  L  S  P  L  D  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0038L16.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111592" stop="111615"/>
                    <exon start="111704" stop="111963"/>
                    <exon start="114457" stop="114601"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>426</number_coding_nucleotides>
                  <number_encoded_amino_acids>142</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AVDVEFHPQKRNTESVKMSRAAAAAVKGGKKKGASFVIDCSKPVEDSIMEIASLDKFLQERIKVGGKAGALGDSVTVTRDKNKITVTCNSTFSKRYLKYLVKKYLKKNNVRDWLRVIASNKDRNVYELRYFNIAENEADEED*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0038L16.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="114592" stop="114825"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRLNMTIQCLSLSSFFSRPSLFDPCIITNESCLLISRFCFCSLLISKRKHYIDTLVCLSLGIIMKMSIYLYCLSPLDD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="111529" e_stop="111615"/>
            <exon e_start="111704" e_stop="111963"/>
            <exon e_start="114457" e_stop="114812"/>
            <exon e_start="115018" e_stop="115029"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.917" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.988" e_score="1.000"/>
          <exon-only e_score="0.583"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="111529" e_stop="111615" e_length="87"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.917">
            <gDNA_intron_boundary i_start="111616" i_stop="111703" i_length="88"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="111704" e_stop="111963" e_length="260"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="111964" i_stop="114456" i_length="2493"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="114457" e_stop="114812" e_length="356"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.988">
            <gDNA_intron_boundary i_start="114813" i_stop="115017" i_length="205"/>
          </intron>
          <exon e_serial="4" e_score="0.583">
            <gDNA_exon_boundary e_start="115018" e_stop="115029" e_length="12"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111529" stop="111615"/>
              <exon start="111704" stop="111963"/>
              <exon start="114457" stop="114578"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E591339" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111556" stop="111615"/>
              <exon start="111704" stop="111963"/>
              <exon start="114457" stop="114606"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276642" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111561" stop="111615"/>
              <exon start="111704" stop="111963"/>
              <exon start="114457" stop="114802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722007" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111570" stop="111615"/>
              <exon start="111704" stop="111963"/>
              <exon start="114457" stop="114760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E571534" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111589" stop="111615"/>
              <exon start="111704" stop="111963"/>
              <exon start="114457" stop="114800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746042" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111602" stop="111615"/>
              <exon start="111704" stop="111963"/>
              <exon start="114457" stop="114755"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306494" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111710" stop="111963"/>
              <exon start="114457" stop="114811"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353870" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111905" stop="111963"/>
              <exon start="114457" stop="114812"/>
              <exon start="115018" stop="115029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287536" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCAAGTAGGAACGAAGGAAAACCCTAATTTAACAGAGTCACCACTTCCATACACTCACACTAGGCCGTGGACGTCGAGTTTCATCCT : CAGAAGAGAAATACAGAGAGTGTAAAGATGAGCCGAGCAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATTGACTGTTCGAAGCCGGTAGAAGACAGTATCATGGAGATTGCTTCTCTTGACAAGTTCCTTCAAGAGAGGATTAAGGTTGGTGGAAAAGCTGGTGCTCTTGGGGATTCCGTTACTGTTACTCGTGACAAGAACAAGATCACCGTCACCTGCAACTCAACTTTTTCCAAGAG : GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAATAACGTCAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTACGAATTGCGCTACTTCAACATTGCTGAGAATGAAGCAGATGAAGAAGATTAAACATGACCATTCAATGTCTCTCTTTATCTTCTTTCTTTAGTCGGCCTTCACTTTTTGATCCTTGTATCATCACTAATGAATCCTGTCTTCTCATTTCTAGATTTTGTTTTTGCAGTTTGCTTATCAGTAAAAGAAAACATTACATCGATACTTTGGTTTGTCTATCTTTGGGGATAATTATGAAAATGTCAATTTATCTGTATTGCCTTTC : GGAAAGTGAAAA</gDNA_template>
            <first_frame> A  S  R  N  E  G  K  P  *  F  N  R  V  T  T  S  I  H  S  H  *  A  V  D  V  E  F  H  P  :  Q  K  R  N  T  E  S  V  K  M  S  R  A  A  A  A  A  V  K  G  G  K  K  K  G  A  S  F  V  I  D  C  S  K  P  V  E  D  S  I  M  E  I  A  S  L  D  K  F  L  Q  E  R  I  K  V  G  G  K  A  G  A  L  G  D  S  V  T  V  T  R  D  K  N  K  I  T  V  T  C  N  S  T  F  S  K  R :   Y  L  K  Y  L  V  K  K  Y  L  K  K  N  N  V  R  D  W  L  R  V  I  A  S  N  K  D  R  N  V  Y  E  L  R  Y  F  N  I  A  E  N  E  A  D  E  E  D  *  T  *  P  F  N  V  S  L  Y  L  L  S  L  V  G  L  H  F  L  I  L  V  S  S  L  M  N  P  V  F  S  F  L  D  F  V  F  A  V  C  L  S  V  K  E  N  I  T  S  I  L  W  F  V  Y  L  W  G  *  L  *  K  C  Q  F  I  C  I  A  F   : R  K  V  K  </first_frame>
            <second_frame>  Q  V  G  T  K  E  N  P  N  L  T  E  S  P  L  P  Y  T  H  T  R  P  W  T  S  S  F  I  L :   R  R  E  I  Q  R  V  *  R  *  A  E  Q  Q  Q  Q  Q  *  R  A  G  R  R  R  G  Q  A  S  S  L  T  V  R  S  R  *  K  T  V  S  W  R  L  L  L  L  T  S  S  F  K  R  G  L  R  L  V  E  K  L  V  L  L  G  I  P  L  L  L  L  V  T  R  T  R  S  P  S  P  A  T  Q  L  F  P  R   : G  T  S  N  T  L  S  K  S  T  *  R  K  I  T  S  G  I  G  L  G  *  L  L  P  T  R  T  G  M  F  T  N  C  A  T  S  T  L  L  R  M  K  Q  M  K  K  I  K  H  D  H  S  M  S  L  F  I  F  F  L  *  S  A  F  T  F  *  S  L  Y  H  H  *  *  I  L  S  S  H  F  *  I  L  F  L  Q  F  A  Y  Q  *  K  K  T  L  H  R  Y  F  G  L  S  I  F  G  D  N  Y  E  N  V  N  L  S  V  L  P  F  :  G  K  *  K </second_frame>
            <third_frame>   K  *  E  R  R  K  T  L  I  *  Q  S  H  H  F  H  T  L  T  L  G  R  G  R  R  V  S  S   : S  E  E  K  Y  R  E  C  K  D  E  P  S  S  S  S  S  S  E  G  R  E  E  E  G  G  K  L  R  H  *  L  F  E  A  G  R  R  Q  Y  H  G  D  C  F  S  *  Q  V  P  S  R  E  D  *  G  W  W  K  S  W  C  S  W  G  F  R  Y  C  Y  S  *  Q  E  Q  D  H  R  H  L  Q  L  N  F  F  Q  E  :  V  P  Q  I  P  C  Q  K  V  L  E  E  K  *  R  Q  G  L  A  *  G  D  C  F  Q  Q  G  Q  E  C  L  R  I  A  L  L  Q  H  C  *  E  *  S  R  *  R  R  L  N  M  T  I  Q  C  L  S  L  S  S  F  F  S  R  P  S  L  F  D  P  C  I  I  T  N  E  S  C  L  L  I  S  R  F  C  F  C  S  L  L  I  S  K  R  K  H  Y  I  D  T  L  V  C  L  S  L  G  I  I  M  K  M  S  I  Y  L  Y  C  L  S :   E  S  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0038L16.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111592" stop="111615"/>
                    <exon start="111704" stop="111963"/>
                    <exon start="114457" stop="114601"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>426</number_coding_nucleotides>
                  <number_encoded_amino_acids>142</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AVDVEFHPQKRNTESVKMSRAAAAAVKGGKKKGASFVIDCSKPVEDSIMEIASLDKFLQERIKVGGKAGALGDSVTVTRDKNKITVTCNSTFSKRYLKYLVKKYLKKNNVRDWLRVIASNKDRNVYELRYFNIAENEADEED*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0038L16.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="114592" stop="114812"/>
                    <exon start="115018" stop="115027"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRLNMTIQCLSLSSFFSRPSLFDPCIITNESCLLISRFCFCSLLISKRKHYIDTLVCLSLGIIMKMSIYLYCLSESE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="111529" e_stop="111615"/>
            <exon e_start="111704" e_stop="111963"/>
            <exon e_start="114457" e_stop="114764"/>
            <exon e_start="115018" e_stop="115028"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.917" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.988" e_score="1.000"/>
          <exon-only e_score="0.545"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="111529" e_stop="111615" e_length="87"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.917">
            <gDNA_intron_boundary i_start="111616" i_stop="111703" i_length="88"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="111704" e_stop="111963" e_length="260"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="111964" i_stop="114456" i_length="2493"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="114457" e_stop="114764" e_length="308"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.988">
            <gDNA_intron_boundary i_start="114765" i_stop="115017" i_length="253"/>
          </intron>
          <exon e_serial="4" e_score="0.545">
            <gDNA_exon_boundary e_start="115018" e_stop="115028" e_length="11"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111529" stop="111615"/>
              <exon start="111704" stop="111963"/>
              <exon start="114457" stop="114578"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E591339" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111556" stop="111615"/>
              <exon start="111704" stop="111963"/>
              <exon start="114457" stop="114606"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276642" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111570" stop="111615"/>
              <exon start="111704" stop="111963"/>
              <exon start="114457" stop="114760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E571534" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111602" stop="111615"/>
              <exon start="111704" stop="111963"/>
              <exon start="114457" stop="114755"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306494" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111604" stop="111615"/>
              <exon start="111704" stop="111963"/>
              <exon start="114457" stop="114764"/>
              <exon start="115018" stop="115028"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462945" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCAAGTAGGAACGAAGGAAAACCCTAATTTAACAGAGTCACCACTTCCATACACTCACACTAGGCCGTGGACGTCGAGTTTCATCCT : CAGAAGAGAAATACAGAGAGTGTAAAGATGAGCCGAGCAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATTGACTGTTCGAAGCCGGTAGAAGACAGTATCATGGAGATTGCTTCTCTTGACAAGTTCCTTCAAGAGAGGATTAAGGTTGGTGGAAAAGCTGGTGCTCTTGGGGATTCCGTTACTGTTACTCGTGACAAGAACAAGATCACCGTCACCTGCAACTCAACTTTTTCCAAGAG : GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAATAACGTCAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTACGAATTGCGCTACTTCAACATTGCTGAGAATGAAGCAGATGAAGAAGATTAAACATGACCATTCAATGTCTCTCTTTATCTTCTTTCTTTAGTCGGCCTTCACTTTTTGATCCTTGTATCATCACTAATGAATCCTGTCTTCTCATTTCTAGATTTTGTTTTTGCAGTTTGCTTATCAGTAAAAGAAAACATTACATCGATACTTTGGTTTGTCT : GGAAAGTGAAA</gDNA_template>
            <first_frame> A  S  R  N  E  G  K  P  *  F  N  R  V  T  T  S  I  H  S  H  *  A  V  D  V  E  F  H  P  :  Q  K  R  N  T  E  S  V  K  M  S  R  A  A  A  A  A  V  K  G  G  K  K  K  G  A  S  F  V  I  D  C  S  K  P  V  E  D  S  I  M  E  I  A  S  L  D  K  F  L  Q  E  R  I  K  V  G  G  K  A  G  A  L  G  D  S  V  T  V  T  R  D  K  N  K  I  T  V  T  C  N  S  T  F  S  K  R :   Y  L  K  Y  L  V  K  K  Y  L  K  K  N  N  V  R  D  W  L  R  V  I  A  S  N  K  D  R  N  V  Y  E  L  R  Y  F  N  I  A  E  N  E  A  D  E  E  D  *  T  *  P  F  N  V  S  L  Y  L  L  S  L  V  G  L  H  F  L  I  L  V  S  S  L  M  N  P  V  F  S  F  L  D  F  V  F  A  V  C  L  S  V  K  E  N  I  T  S  I  L  W  F  V   : W  K  V  K </first_frame>
            <second_frame>  Q  V  G  T  K  E  N  P  N  L  T  E  S  P  L  P  Y  T  H  T  R  P  W  T  S  S  F  I  L :   R  R  E  I  Q  R  V  *  R  *  A  E  Q  Q  Q  Q  Q  *  R  A  G  R  R  R  G  Q  A  S  S  L  T  V  R  S  R  *  K  T  V  S  W  R  L  L  L  L  T  S  S  F  K  R  G  L  R  L  V  E  K  L  V  L  L  G  I  P  L  L  L  L  V  T  R  T  R  S  P  S  P  A  T  Q  L  F  P  R   : G  T  S  N  T  L  S  K  S  T  *  R  K  I  T  S  G  I  G  L  G  *  L  L  P  T  R  T  G  M  F  T  N  C  A  T  S  T  L  L  R  M  K  Q  M  K  K  I  K  H  D  H  S  M  S  L  F  I  F  F  L  *  S  A  F  T  F  *  S  L  Y  H  H  *  *  I  L  S  S  H  F  *  I  L  F  L  Q  F  A  Y  Q  *  K  K  T  L  H  R  Y  F  G  L  S  :  G  K  *   </second_frame>
            <third_frame>   K  *  E  R  R  K  T  L  I  *  Q  S  H  H  F  H  T  L  T  L  G  R  G  R  R  V  S  S   : S  E  E  K  Y  R  E  C  K  D  E  P  S  S  S  S  S  S  E  G  R  E  E  E  G  G  K  L  R  H  *  L  F  E  A  G  R  R  Q  Y  H  G  D  C  F  S  *  Q  V  P  S  R  E  D  *  G  W  W  K  S  W  C  S  W  G  F  R  Y  C  Y  S  *  Q  E  Q  D  H  R  H  L  Q  L  N  F  F  Q  E  :  V  P  Q  I  P  C  Q  K  V  L  E  E  K  *  R  Q  G  L  A  *  G  D  C  F  Q  Q  G  Q  E  C  L  R  I  A  L  L  Q  H  C  *  E  *  S  R  *  R  R  L  N  M  T  I  Q  C  L  S  L  S  S  F  F  S  R  P  S  L  F  D  P  C  I  I  T  N  E  S  C  L  L  I  S  R  F  C  F  C  S  L  L  I  S  K  R  K  H  Y  I  D  T  L  V  C  L :   E  S  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0038L16.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111592" stop="111615"/>
                    <exon start="111704" stop="111963"/>
                    <exon start="114457" stop="114601"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>426</number_coding_nucleotides>
                  <number_encoded_amino_acids>142</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AVDVEFHPQKRNTESVKMSRAAAAAVKGGKKKGASFVIDCSKPVEDSIMEIASLDKFLQERIKVGGKAGALGDSVTVTRDKNKITVTCNSTFSKRYLKYLVKKYLKKNNVRDWLRVIASNKDRNVYELRYFNIAENEADEED*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="111472" e_stop="111615"/>
            <exon e_start="111707" e_stop="111963"/>
            <exon e_start="114457" e_stop="114871"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.808" e_score="0.972"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.945"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.972">
            <gDNA_exon_boundary e_start="111472" e_stop="111615" e_length="144"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.808">
            <gDNA_intron_boundary i_start="111616" i_stop="111706" i_length="91"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="111707" e_stop="111963" e_length="257"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="111964" i_stop="114456" i_length="2493"/>
          </intron>
          <exon e_serial="3" e_score="0.945">
            <gDNA_exon_boundary e_start="114457" e_stop="114871" e_length="415"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111472" stop="111615"/>
              <exon start="111707" stop="111963"/>
              <exon start="114457" stop="114639"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287412" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111551" stop="111615"/>
              <exon start="111707" stop="111963"/>
              <exon start="114457" stop="114594"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111600" stop="111615"/>
              <exon start="111707" stop="111963"/>
              <exon start="114457" stop="114871"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733085" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111710" stop="111963"/>
              <exon start="114457" stop="114811"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353870" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGAACGTAACCTAAAATAGGGCCAAAAGTGCAAATTAGAGAGAGGTGCCACATTTAGCAAGTAGGAACGAAGGAAAACCCTAATTTAACAGAGTCACCACTTCCATACACTCACACTAGGCCGTGGACGTCGAGTTTCATCCT : AAGAGAAATACAGAGAGTGTAAAGATGAGCCGAGCAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATTGACTGTTCGAAGCCGGTAGAAGACAGTATCATGGAGATTGCTTCTCTTGACAAGTTCCTTCAAGAGAGGATTAAGGTTGGTGGAAAAGCTGGTGCTCTTGGGGATTCCGTTACTGTTACTCGTGACAAGAACAAGATCACCGTCACCTGCAACTCAACTTTTTCCAAGAG : GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAATAACGTCAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTACGAATTGCGCTACTTCAACATTGCTGAGAATGAAGCAGATGAAGAAGATTAAACATGACCATTCAATGTCTCTCTTTATCTTCTTTCTTTAGTCGGCCTTCACTTTTTGATCCTTGTATCATCACTAATGAATCCTGTCTTCTCATTTCTAGATTTTGTTTTTGCAGTTTGCTTATCAGTAAAAGAAAACATTACATCGATACTTTGGTTTGTCTATCTTTGGGGATAATTATGAAAATGTCAATTTATCTGTATTGCCTTTCTCCTCTGGATGATCTCAAGACATATATAAGATTAAAATAGATATAATATCTCATAATTA</gDNA_template>
            <first_frame> W  N  V  T  *  N  R  A  K  S  A  N  *  R  E  V  P  H  L  A  S  R  N  E  G  K  P  *  F  N  R  V  T  T  S  I  H  S  H  *  A  V  D  V  E  F  H  P  :  K  R  N  T  E  S  V  K  M  S  R  A  A  A  A  A  V  K  G  G  K  K  K  G  A  S  F  V  I  D  C  S  K  P  V  E  D  S  I  M  E  I  A  S  L  D  K  F  L  Q  E  R  I  K  V  G  G  K  A  G  A  L  G  D  S  V  T  V  T  R  D  K  N  K  I  T  V  T  C  N  S  T  F  S  K  R :   Y  L  K  Y  L  V  K  K  Y  L  K  K  N  N  V  R  D  W  L  R  V  I  A  S  N  K  D  R  N  V  Y  E  L  R  Y  F  N  I  A  E  N  E  A  D  E  E  D  *  T  *  P  F  N  V  S  L  Y  L  L  S  L  V  G  L  H  F  L  I  L  V  S  S  L  M  N  P  V  F  S  F  L  D  F  V  F  A  V  C  L  S  V  K  E  N  I  T  S  I  L  W  F  V  Y  L  W  G  *  L  *  K  C  Q  F  I  C  I  A  F  L  L  W  M  I  S  R  H  I  *  D  *  N  R  Y  N  I  S  *  L </first_frame>
            <second_frame>  G  T  *  P  K  I  G  P  K  V  Q  I  R  E  R  C  H  I  *  Q  V  G  T  K  E  N  P  N  L  T  E  S  P  L  P  Y  T  H  T  R  P  W  T  S  S  F  I  L :   R  E  I  Q  R  V  *  R  *  A  E  Q  Q  Q  Q  Q  *  R  A  G  R  R  R  G  Q  A  S  S  L  T  V  R  S  R  *  K  T  V  S  W  R  L  L  L  L  T  S  S  F  K  R  G  L  R  L  V  E  K  L  V  L  L  G  I  P  L  L  L  L  V  T  R  T  R  S  P  S  P  A  T  Q  L  F  P  R   : G  T  S  N  T  L  S  K  S  T  *  R  K  I  T  S  G  I  G  L  G  *  L  L  P  T  R  T  G  M  F  T  N  C  A  T  S  T  L  L  R  M  K  Q  M  K  K  I  K  H  D  H  S  M  S  L  F  I  F  F  L  *  S  A  F  T  F  *  S  L  Y  H  H  *  *  I  L  S  S  H  F  *  I  L  F  L  Q  F  A  Y  Q  *  K  K  T  L  H  R  Y  F  G  L  S  I  F  G  D  N  Y  E  N  V  N  L  S  V  L  P  F  S  S  G  *  S  Q  D  I  Y  K  I  K  I  D  I  I  S  H  N   </second_frame>
            <third_frame>   E  R  N  L  K  *  G  Q  K  C  K  L  E  R  G  A  T  F  S  K  *  E  R  R  K  T  L  I  *  Q  S  H  H  F  H  T  L  T  L  G  R  G  R  R  V  S  S   : *  E  K  Y  R  E  C  K  D  E  P  S  S  S  S  S  S  E  G  R  E  E  E  G  G  K  L  R  H  *  L  F  E  A  G  R  R  Q  Y  H  G  D  C  F  S  *  Q  V  P  S  R  E  D  *  G  W  W  K  S  W  C  S  W  G  F  R  Y  C  Y  S  *  Q  E  Q  D  H  R  H  L  Q  L  N  F  F  Q  E  :  V  P  Q  I  P  C  Q  K  V  L  E  E  K  *  R  Q  G  L  A  *  G  D  C  F  Q  Q  G  Q  E  C  L  R  I  A  L  L  Q  H  C  *  E  *  S  R  *  R  R  L  N  M  T  I  Q  C  L  S  L  S  S  F  F  S  R  P  S  L  F  D  P  C  I  I  T  N  E  S  C  L  L  I  S  R  F  C  F  C  S  L  L  I  S  K  R  K  H  Y  I  D  T  L  V  C  L  S  L  G  I  I  M  K  M  S  I  Y  L  Y  C  L  S  P  L  D  D  L  K  T  Y  I  R  L  K  *  I  *  Y  L  I  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0038L16.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111592" stop="111615"/>
                    <exon start="111707" stop="111963"/>
                    <exon start="114457" stop="114601"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>423</number_coding_nucleotides>
                  <number_encoded_amino_acids>141</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AVDVEFHPKRNTESVKMSRAAAAAVKGGKKKGASFVIDCSKPVEDSIMEIASLDKFLQERIKVGGKAGALGDSVTVTRDKNKITVTCNSTFSKRYLKYLVKKYLKKNNVRDWLRVIASNKDRNVYELRYFNIAENEADEED*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0038L16.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="114592" stop="114852"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRLNMTIQCLSLSSFFSRPSLFDPCIITNESCLLISRFCFCSLLISKRKHYIDTLVCLSLGIIMKMSIYLYCLSPLDDLKTYIRLK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="111691" e_stop="111963"/>
            <exon e_start="114457" e_stop="114812"/>
            <exon e_start="115018" e_stop="115029"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.988" e_score="1.000"/>
          <exon-only e_score="0.583"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="111691" e_stop="111963" e_length="273"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="111964" i_stop="114456" i_length="2493"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="114457" e_stop="114812" e_length="356"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.988">
            <gDNA_intron_boundary i_start="114813" i_stop="115017" i_length="205"/>
          </intron>
          <exon e_serial="3" e_score="0.583">
            <gDNA_exon_boundary e_start="115018" e_stop="115029" e_length="12"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111691" stop="111963"/>
              <exon start="114457" stop="114584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437671" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111710" stop="111963"/>
              <exon start="114457" stop="114811"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353870" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111905" stop="111963"/>
              <exon start="114457" stop="114812"/>
              <exon start="115018" stop="115029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287536" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTGAATGCCAGCAGAAGAGAAATACAGAGAGTGTAAAGATGAGCCGAGCAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATTGACTGTTCGAAGCCGGTAGAAGACAGTATCATGGAGATTGCTTCTCTTGACAAGTTCCTTCAAGAGAGGATTAAGGTTGGTGGAAAAGCTGGTGCTCTTGGGGATTCCGTTACTGTTACTCGTGACAAGAACAAGATCACCGTCACCTGCAACTCAACTTTTTCCAAGAG : GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAATAACGTCAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTACGAATTGCGCTACTTCAACATTGCTGAGAATGAAGCAGATGAAGAAGATTAAACATGACCATTCAATGTCTCTCTTTATCTTCTTTCTTTAGTCGGCCTTCACTTTTTGATCCTTGTATCATCACTAATGAATCCTGTCTTCTCATTTCTAGATTTTGTTTTTGCAGTTTGCTTATCAGTAAAAGAAAACATTACATCGATACTTTGGTTTGTCTATCTTTGGGGATAATTATGAAAATGTCAATTTATCTGTATTGCCTTTC : GGAAAGTGAAAA</gDNA_template>
            <first_frame> F  *  M  P  A  E  E  K  Y  R  E  C  K  D  E  P  S  S  S  S  S  S  E  G  R  E  E  E  G  G  K  L  R  H  *  L  F  E  A  G  R  R  Q  Y  H  G  D  C  F  S  *  Q  V  P  S  R  E  D  *  G  W  W  K  S  W  C  S  W  G  F  R  Y  C  Y  S  *  Q  E  Q  D  H  R  H  L  Q  L  N  F  F  Q  E  :  V  P  Q  I  P  C  Q  K  V  L  E  E  K  *  R  Q  G  L  A  *  G  D  C  F  Q  Q  G  Q  E  C  L  R  I  A  L  L  Q  H  C  *  E  *  S  R  *  R  R  L  N  M  T  I  Q  C  L  S  L  S  S  F  F  S  R  P  S  L  F  D  P  C  I  I  T  N  E  S  C  L  L  I  S  R  F  C  F  C  S  L  L  I  S  K  R  K  H  Y  I  D  T  L  V  C  L  S  L  G  I  I  M  K  M  S  I  Y  L  Y  C  L  S :   E  S  E   </first_frame>
            <second_frame>  F  E  C  Q  Q  K  R  N  T  E  S  V  K  M  S  R  A  A  A  A  A  V  K  G  G  K  K  K  G  A  S  F  V  I  D  C  S  K  P  V  E  D  S  I  M  E  I  A  S  L  D  K  F  L  Q  E  R  I  K  V  G  G  K  A  G  A  L  G  D  S  V  T  V  T  R  D  K  N  K  I  T  V  T  C  N  S  T  F  S  K  R :   Y  L  K  Y  L  V  K  K  Y  L  K  K  N  N  V  R  D  W  L  R  V  I  A  S  N  K  D  R  N  V  Y  E  L  R  Y  F  N  I  A  E  N  E  A  D  E  E  D  *  T  *  P  F  N  V  S  L  Y  L  L  S  L  V  G  L  H  F  L  I  L  V  S  S  L  M  N  P  V  F  S  F  L  D  F  V  F  A  V  C  L  S  V  K  E  N  I  T  S  I  L  W  F  V  Y  L  W  G  *  L  *  K  C  Q  F  I  C  I  A  F   : R  K  V  K  </second_frame>
            <third_frame>   L  N  A  S  R  R  E  I  Q  R  V  *  R  *  A  E  Q  Q  Q  Q  Q  *  R  A  G  R  R  R  G  Q  A  S  S  L  T  V  R  S  R  *  K  T  V  S  W  R  L  L  L  L  T  S  S  F  K  R  G  L  R  L  V  E  K  L  V  L  L  G  I  P  L  L  L  L  V  T  R  T  R  S  P  S  P  A  T  Q  L  F  P  R   : G  T  S  N  T  L  S  K  S  T  *  R  K  I  T  S  G  I  G  L  G  *  L  L  P  T  R  T  G  M  F  T  N  C  A  T  S  T  L  L  R  M  K  Q  M  K  K  I  K  H  D  H  S  M  S  L  F  I  F  F  L  *  S  A  F  T  F  *  S  L  Y  H  H  *  *  I  L  S  S  H  F  *  I  L  F  L  Q  F  A  Y  Q  *  K  K  T  L  H  R  Y  F  G  L  S  I  F  G  D  N  Y  E  N  V  N  L  S  V  L  P  F  :  G  K  *  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0038L16.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111692" stop="111963"/>
                    <exon start="114457" stop="114601"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>414</number_coding_nucleotides>
                  <number_encoded_amino_acids>138</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FECQQKRNTESVKMSRAAAAAVKGGKKKGASFVIDCSKPVEDSIMEIASLDKFLQERIKVGGKAGALGDSVTVTRDKNKITVTCNSTFSKRYLKYLVKKYLKKNNVRDWLRVIASNKDRNVYELRYFNIAENEADEED*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0038L16.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="5" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="114592" stop="114812"/>
                    <exon start="115018" stop="115027"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRLNMTIQCLSLSSFFSRPSLFDPCIITNESCLLISRFCFCSLLISKRKHYIDTLVCLSLGIIMKMSIYLYCLSESE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="120255" PGL_stop="114705"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="120255" e_stop="119153"/>
            <exon e_start="117853" e_stop="117624"/>
            <exon e_start="117531" e_stop="117439"/>
            <exon e_start="117296" e_stop="116850"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.941" acc_prob="0.998" e_score="0.998"/>
          <exon-intron don_prob="0.881" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.977" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="120255" e_stop="119153" e_length="1103"/>
          </exon>
          <intron i_serial="1" don_prob="0.941" acc_prob="0.998">
            <gDNA_intron_boundary i_start="119152" i_stop="117854" i_length="1299"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="117853" e_stop="117624" e_length="230"/>
          </exon>
          <intron i_serial="2" don_prob="0.881" acc_prob="0.996">
            <gDNA_intron_boundary i_start="117623" i_stop="117532" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="117531" e_stop="117439" e_length="93"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.977">
            <gDNA_intron_boundary i_start="117438" i_stop="117297" i_length="142"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="117296" e_stop="116850" e_length="447"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120255" stop="119153"/>
              <exon start="117853" stop="117624"/>
              <exon start="117531" stop="117439"/>
              <exon start="117296" stop="117074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746102" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120224" stop="119428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E591506" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120220" stop="119518"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120216" stop="119557"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730931" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120214" stop="119400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729968" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120209" stop="119878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283968" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120207" stop="119799"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445724" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120204" stop="119672"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253410" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120195" stop="119552"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467554" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120178" stop="119306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727367" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120178" stop="119613"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120178" stop="119691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324017" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120176" stop="119486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729343" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120175" stop="119572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272873" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120173" stop="119326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727565" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120173" stop="119615"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312351" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120172" stop="119681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367260" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120171" stop="119528"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120169" stop="119398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E590527" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120168" stop="119556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306807" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120151" stop="119547"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E415113" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120151" stop="119582"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475143" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120146" stop="119691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120132" stop="119605"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438361" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120119" stop="119458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484533" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120076" stop="119371"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729470" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119955" stop="119405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254133" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119841" stop="119153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119819" stop="119345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214506" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119690" stop="119153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467051" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119598" stop="119173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472520" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119566" stop="119153"/>
              <exon start="117853" stop="117768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284051" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119485" stop="119153"/>
              <exon start="117853" stop="117791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294288" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119485" stop="119153"/>
              <exon start="117853" stop="117791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294287" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119485" stop="119288"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289947" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119395" stop="119153"/>
              <exon start="117853" stop="117624"/>
              <exon start="117531" stop="117439"/>
              <exon start="117296" stop="117197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344812" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119362" stop="119153"/>
              <exon start="117853" stop="117624"/>
              <exon start="117531" stop="117439"/>
              <exon start="117296" stop="117216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404669" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119350" stop="119153"/>
              <exon start="117853" stop="117624"/>
              <exon start="117531" stop="117439"/>
              <exon start="117296" stop="117109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573355" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119282" stop="119153"/>
              <exon start="117853" stop="117624"/>
              <exon start="117531" stop="117439"/>
              <exon start="117296" stop="117109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418599" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119282" stop="119153"/>
              <exon start="117853" stop="117624"/>
              <exon start="117531" stop="117439"/>
              <exon start="117296" stop="117109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119282" stop="119153"/>
              <exon start="117853" stop="117624"/>
              <exon start="117531" stop="117440"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441194" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119282" stop="119153"/>
              <exon start="117853" stop="117624"/>
              <exon start="117531" stop="117441"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442330" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119224" stop="119153"/>
              <exon start="117853" stop="117624"/>
              <exon start="117531" stop="117439"/>
              <exon start="117296" stop="117069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284494" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117849" stop="117624"/>
              <exon start="117531" stop="117439"/>
              <exon start="117296" stop="117066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279534" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117631" stop="117624"/>
              <exon start="117531" stop="117439"/>
              <exon start="117296" stop="116956"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226505" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117214" stop="116956"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226906" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117181" stop="116850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390468" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117181" stop="116851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390093" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117181" stop="116851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390094" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117181" stop="116851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390607" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117181" stop="116852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390848" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117180" stop="116851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285047" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAGGCAAAAAAATAAACATAGTATTATTATATTGACACCAACTTTAACAAAACCAACAAAATTCTTTGGAGGGTATTAAGCCGTCGCTTATCTTCATCTTCTTCCTCTGATTCTGTACATTTTTCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGCAGACACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTATTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGAAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGATTCTGTTGCTGACCTTAGGAAGAATCTACAGGCAAGAGGGTCTGATCTTGTTGTTAGAATTGGGAAGCCGGAGACTGTGTTGGTGGAATTAGCTAAAGCTGTTGGAGCTGAAGCTGTGTATGCTCATAGGGAGGTTTCACATGATGAGGTTAAAGGGGAAGATAAGATTGATGCTGTAATGAAGGATGAGGGTTTGGAGGTGAAGTATTTCTGGGGTAGTACATTGTATCATGTTGATGATTTGCCTTTTAAGTTGGAGCAAATGCCTACGAATTACGGAGGCTTTAGGGAGAAAGTGCAGGGATTGGAGGTAAGGAAGACAATTGAGGCATTGGATCAATTGAGGGGATTGCCTGCTAGAGGTGATGTGGAACCTGGGGAGATTCCTTCGTTGGTTGATTTGGGGCTCAATCCTAGTGCCACCATGGGTCAG : AATGGAAAATCAGCTGCTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAAAGACTTAGAAAATTTGCAGCAGAATGTCAGGCCCAACCCAGTAAGGAAAACAAGGATGGCACAAATGACAGCATATATGGTGCAAACTTTTCTTGCAAAATATCGCCTTGGTTAGCTATGGGATGTCTCTCACCCCGTTCCATGTTTGATGAATTGAAGAAGTCCACTTCAAG : AACGATTTCTGCTGCCTCTGCCAAGAAAGATGGTGGTAGTGGCACTGGGCTGAACTGGCTGATGTACGAGCTGTTATGGAGGGATTTTTTCAG : ATTCATCACCAAGAAATATAGTGCTGCAAAACAAAATAGTGCTGCTCCAGTAACTACTTGCGTAGGAGCTGCTGCTTAACGATGGTATACTCAAAAGGAGAATGAAGGTTTCCTTTTTGTAGCTTGATTTATTTTTTCCGGAAGTTTAGCTGTGGAATGTTAGAGTTGGACTGCCATTGAATTGAAGCATTTTTTCTTTTGACAATAAGTGTTGAGACATAAAAGAATTTGTCGCCATTTCTAGCAAGTCGCTCTACAATCCTTCTTATGCTAGTATTTATATATTTTTGATTTCATCTGTAGTTGAAACAGGTGTGATAACAAACATACCTGTAGTTGAAATATGTGTTCCATGTTTGAGATTACCATCCATCTTGAACCCGCGGAGAGTATCCTTGAGCATCAGATGATTTACTATTGATACTCATTTCAATGTAAACTAGTTCT</gDNA_template>
            <first_frame> *  A  K  K  *  T  *  Y  Y  Y  I  D  T  N  F  N  K  T  N  K  I  L  W  R  V  L  S  R  R  L  S  S  S  S  S  S  D  S  V  H  F  S  H  R  K  T  H  Q  K  W  I  Q  R  I  N  F  P  I  T  Q  K  P  K  H  L  K  K  N  N  S  R  H  P  F  Y  R  *  L  Q  F  H  L  L  Y  P  Q  S  F  Q  P  I  S  L  I  L  L  K  S  Q  P  F  S  T  N  Q  T  K  S  K  S  Q  L  K  F  H  L  L  Q  I  S  H  F  Q  L  L  L  F  H  L  Q  I  P  N  S  S  P  L  F  L  L  T  L  F  R  I  L  *  L  L  T  L  F  V  L  L  S  L  L  M  L  L  G  F  D  E  R  R  L  F  G  S  V  T  I  F  V  F  M  I  M  S  V  L  T  R  L  I  M  S  P  C  L  Y  W  L  F  T  V  L  T  R  E  I  M  E  N  P  H  L  G  L  I  K  L  G  R  I  G  L  V  F  *  L  I  L  L  L  T  L  G  R  I  Y  R  Q  E  G  L  I  L  L  L  E  L  G  S  R  R  L  C  W  W  N  *  L  K  L  L  E  L  K  L  C  M  L  I  G  R  F  H  M  M  R  L  K  G  K  I  R  L  M  L  *  *  R  M  R  V  W  R  *  S  I  S  G  V  V  H  C  I  M  L  M  I  C  L  L  S  W  S  K  C  L  R  I  T  E  A  L  G  R  K  C  R  D  W  R  *  G  R  Q  L  R  H  W  I  N  *  G  D  C  L  L  E  V  M  W  N  L  G  R  F  L  R  W  L  I  W  G  S  I  L  V  P  P  W  V  R :   M  E  N  Q  L  L  M  L  P  L  W  E  E  R  M  K  H  C  K  D  L  E  N  L  Q  Q  N  V  R  P  N  P  V  R  K  T  R  M  A  Q  M  T  A  Y  M  V  Q  T  F  L  A  K  Y  R  L  G  *  L  W  D  V  S  H  P  V  P  C  L  M  N  *  R  S  P  L  Q   : E  R  F  L  L  P  L  P  R  K  M  V  V  V  A  L  G  *  T  G  *  C  T  S  C  Y  G  G  I  F  S   : D  S  S  P  R  N  I  V  L  Q  N  K  I  V  L  L  Q  *  L  L  A  *  E  L  L  L  N  D  G  I  L  K  R  R  M  K  V  S  F  L  *  L  D  L  F  F  P  E  V  *  L  W  N  V  R  V  G  L  P  L  N  *  S  I  F  S  F  D  N  K  C  *  D  I  K  E  F  V  A  I  S  S  K  S  L  Y  N  P  S  Y  A  S  I  Y  I  F  L  I  S  S  V  V  E  T  G  V  I  T  N  I  P  V  V  E  I  C  V  P  C  L  R  L  P  S  I  L  N  P  R  R  V  S  L  S  I  R  *  F  T  I  D  T  H  F  N  V  N  *  F  </first_frame>
            <second_frame>  R  Q  K  N  K  H  S  I  I  I  L  T  P  T  L  T  K  P  T  K  F  F  G  G  Y  *  A  V  A  Y  L  H  L  L  P  L  I  L  Y  I  F  L  T  G  K  L  I  R  N  G  S  K  E  S  I  F  R  *  L  R  S  P  N  T  S  R  R  T  T  A  D  T  H  F  T  D  S  F  N  F  T  C  F  I  H  N  P  S  N  P  F  P  *  S  S  *  N  L  N  P  F  Q  Q  T  K  Q  S  Q  N  P  N  S  S  F  I  S  Y  K  S  L  T  F  S  F  F  S  S  T  Y  K  F  Q  I  Q  V  H  Y  F  C  *  P  S  S  E  Y  S  N  S  *  P  S  S  S  F  *  A  F  *  C  C  W  A  S  T  S  V  D  C  L  V  P  *  R  S  S  C  S  *  *  *  V  S  *  R  G  S  *  *  V  H  V  C  I  G  C  L  L  F  *  P  E  R  L  W  K  I  L  I  W  V  *  *  N  W  A  V  *  G  *  F  F  D  *  F  C  C  *  P  *  E  E  S  T  G  K  R  V  *  S  C  C  *  N  W  E  A  G  D  C  V  G  G  I  S  *  S  C  W  S  *  S  C  V  C  S  *  G  G  F  T  *  *  G  *  R  G  R  *  D  *  C  C  N  E  G  *  G  F  G  G  E  V  F  L  G  *  Y  I  V  S  C  *  *  F  A  F  *  V  G  A  N  A  Y  E  L  R  R  L  *  G  E  S  A  G  I  G  G  K  E  D  N  *  G  I  G  S  I  E  G  I  A  C  *  R  *  C  G  T  W  G  D  S  F  V  G  *  F  G  A  Q  S  *  C  H  H  G  S   : E  W  K  I  S  C  *  C  F  P  C  G  R  R  E  *  S  T  A  K  T  *  K  I  C  S  R  M  S  G  P  T  Q  *  G  K  Q  G  W  H  K  *  Q  H  I  W  C  K  L  F  L  Q  N  I  A  L  V  S  Y  G  M  S  L  T  P  F  H  V  *  *  I  E  E  V  H  F  K  :  N  D  F  C  C  L  C  Q  E  R  W  W  *  W  H  W  A  E  L  A  D  V  R  A  V  M  E  G  F  F  Q  :  I  H  H  Q  E  I  *  C  C  K  T  K  *  C  C  S  S  N  Y  L  R  R  S  C  C  L  T  M  V  Y  S  K  G  E  *  R  F  P  F  C  S  L  I  Y  F  F  R  K  F  S  C  G  M  L  E  L  D  C  H  *  I  E  A  F  F  L  L  T  I  S  V  E  T  *  K  N  L  S  P  F  L  A  S  R  S  T  I  L  L  M  L  V  F  I  Y  F  *  F  H  L  *  L  K  Q  V  *  *  Q  T  Y  L  *  L  K  Y  V  F  H  V  *  D  Y  H  P  S  *  T  R  G  E  Y  P  *  A  S  D  D  L  L  L  I  L  I  S  M  *  T  S  S </second_frame>
            <third_frame>   G  K  K  I  N  I  V  L  L  Y  *  H  Q  L  *  Q  N  Q  Q  N  S  L  E  G  I  K  P  S  L  I  F  I  F  F  L  *  F  C  T  F  F  S  P  E  N  S  S  E  M  D  P  K  N  Q  F  S  D  N  S  E  A  Q  T  P  Q  E  E  Q  Q  Q  T  P  I  L  P  I  A  S  I  S  L  A  L  S  T  I  L  P  T  H  F  L  N  P  P  K  I  S  T  L  F  N  K  P  N  K  V  K  I  P  T  Q  V  S  S  L  T  N  L  S  L  S  A  S  S  L  P  P  T  N  S  K  F  K  S  T  I  S  A  N  P  L  Q  N  T  L  T  L  N  P  L  R  P  S  E  P  S  N  A  A  G  L  R  R  A  S  I  V  W  F  R  N  D  L  R  V  H  D  N  E  C  L  N  A  A  H  N  E  S  M  S  V  L  A  V  Y  C  F  D  P  R  D  Y  G  K  S  S  S  G  F  D  K  T  G  P  Y  R  A  S  F  L  I  D  S  V  A  D  L  R  K  N  L  Q  A  R  G  S  D  L  V  V  R  I  G  K  P  E  T  V  L  V  E  L  A  K  A  V  G  A  E  A  V  Y  A  H  R  E  V  S  H  D  E  V  K  G  E  D  K  I  D  A  V  M  K  D  E  G  L  E  V  K  Y  F  W  G  S  T  L  Y  H  V  D  D  L  P  F  K  L  E  Q  M  P  T  N  Y  G  G  F  R  E  K  V  Q  G  L  E  V  R  K  T  I  E  A  L  D  Q  L  R  G  L  P  A  R  G  D  V  E  P  G  E  I  P  S  L  V  D  L  G  L  N  P  S  A  T  M  G  Q  :  N  G  K  S  A  A  N  A  S  L  V  G  G  E  N  E  A  L  Q  R  L  R  K  F  A  A  E  C  Q  A  Q  P  S  K  E  N  K  D  G  T  N  D  S  I  Y  G  A  N  F  S  C  K  I  S  P  W  L  A  M  G  C  L  S  P  R  S  M  F  D  E  L  K  K  S  T  S  R :   T  I  S  A  A  S  A  K  K  D  G  G  S  G  T  G  L  N  W  L  M  Y  E  L  L  W  R  D  F  F  R :   F  I  T  K  K  Y  S  A  A  K  Q  N  S  A  A  P  V  T  T  C  V  G  A  A  A  *  R  W  Y  T  Q  K  E  N  E  G  F  L  F  V  A  *  F  I  F  S  G  S  L  A  V  E  C  *  S  W  T  A  I  E  L  K  H  F  F  F  *  Q  *  V  L  R  H  K  R  I  C  R  H  F  *  Q  V  A  L  Q  S  F  L  C  *  Y  L  Y  I  F  D  F  I  C  S  *  N  R  C  D  N  K  H  T  C  S  *  N  M  C  S  M  F  E  I  T  I  H  L  E  P  A  E  S  I  L  E  H  Q  M  I  Y  Y  *  Y  S  F  Q  C  K  L  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0038L16.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120145" stop="119153"/>
                    <exon start="117853" stop="117624"/>
                    <exon start="117531" stop="117439"/>
                    <exon start="117296" stop="117218"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1392</number_coding_nucleotides>
                  <number_encoded_amino_acids>464</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FCTFFSPENSSEMDPKNQFSDNSEAQTPQEEQQQTPILPIASISLALSTILPTHFLNPPKISTLFNKPNKVKIPTQVSSLTNLSLSASSLPPTNSKFKSTISANPLQNTLTLNPLRPSEPSNAAGLRRASIVWFRNDLRVHDNECLNAAHNESMSVLAVYCFDPRDYGKSSSGFDKTGPYRASFLIDSVADLRKNLQARGSDLVVRIGKPETVLVELAKAVGAEAVYAHREVSHDEVKGEDKIDAVMKDEGLEVKYFWGSTLYHVDDLPFKLEQMPTNYGGFREKVQGLEVRKTIEALDQLRGLPARGDVEPGEIPSLVDLGLNPSATMGQNGKSAANASLVGGENEALQRLRKFAAECQAQPSKENKDGTNDSIYGANFSCKISPWLAMGCLSPRSMFDELKKSTSRTISAASAKKDGGSGTGLNWLMYELLWRDFFRFITKKYSAAKQNSAAPVTTCVGAAA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0038L16.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="117081" stop="116887"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DIKEFVAISSKSLYNPSYASIYIFLISSVVETGVITNIPVVEICVPCLRLPSILNPRRVSLSIR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="120255" e_stop="119153"/>
            <exon e_start="117853" e_stop="117624"/>
            <exon e_start="117531" e_stop="117439"/>
            <exon e_start="117296" e_stop="117050"/>
            <exon e_start="114720" e_stop="114705"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.941" acc_prob="0.998" e_score="0.998"/>
          <exon-intron don_prob="0.881" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.502" acc_prob="0.036" e_score="1.000"/>
          <exon-only e_score="0.625"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="120255" e_stop="119153" e_length="1103"/>
          </exon>
          <intron i_serial="1" don_prob="0.941" acc_prob="0.998">
            <gDNA_intron_boundary i_start="119152" i_stop="117854" i_length="1299"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="117853" e_stop="117624" e_length="230"/>
          </exon>
          <intron i_serial="2" don_prob="0.881" acc_prob="0.996">
            <gDNA_intron_boundary i_start="117623" i_stop="117532" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="117531" e_stop="117439" e_length="93"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.977">
            <gDNA_intron_boundary i_start="117438" i_stop="117297" i_length="142"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="117296" e_stop="117050" e_length="247"/>
          </exon>
          <intron i_serial="4" don_prob="0.502" acc_prob="0.036">
            <gDNA_intron_boundary i_start="117049" i_stop="114721" i_length="2329"/>
          </intron>
          <exon e_serial="5" e_score="0.625">
            <gDNA_exon_boundary e_start="114720" e_stop="114705" e_length="16"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120255" stop="119153"/>
              <exon start="117853" stop="117624"/>
              <exon start="117531" stop="117439"/>
              <exon start="117296" stop="117074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746102" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120224" stop="119428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E591506" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120220" stop="119518"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120216" stop="119557"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730931" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120214" stop="119400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729968" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120209" stop="119878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283968" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120207" stop="119799"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445724" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120204" stop="119672"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253410" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120195" stop="119552"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467554" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120178" stop="119306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727367" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120178" stop="119613"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120178" stop="119691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324017" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120176" stop="119486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729343" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120175" stop="119572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272873" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120173" stop="119326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727565" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120173" stop="119615"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312351" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120172" stop="119681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367260" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120171" stop="119528"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120169" stop="119398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E590527" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120168" stop="119556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306807" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120151" stop="119547"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E415113" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120151" stop="119582"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475143" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120146" stop="119691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120132" stop="119605"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438361" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120119" stop="119458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484533" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120076" stop="119371"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729470" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119955" stop="119405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254133" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119841" stop="119153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119819" stop="119345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214506" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119690" stop="119153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467051" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119598" stop="119173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472520" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119566" stop="119153"/>
              <exon start="117853" stop="117768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284051" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119485" stop="119153"/>
              <exon start="117853" stop="117791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294288" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119485" stop="119153"/>
              <exon start="117853" stop="117791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294287" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119485" stop="119288"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289947" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119395" stop="119153"/>
              <exon start="117853" stop="117624"/>
              <exon start="117531" stop="117439"/>
              <exon start="117296" stop="117197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344812" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119362" stop="119153"/>
              <exon start="117853" stop="117624"/>
              <exon start="117531" stop="117439"/>
              <exon start="117296" stop="117216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404669" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119350" stop="119153"/>
              <exon start="117853" stop="117624"/>
              <exon start="117531" stop="117439"/>
              <exon start="117296" stop="117109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573355" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119282" stop="119153"/>
              <exon start="117853" stop="117624"/>
              <exon start="117531" stop="117439"/>
              <exon start="117296" stop="117109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418599" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119282" stop="119153"/>
              <exon start="117853" stop="117624"/>
              <exon start="117531" stop="117439"/>
              <exon start="117296" stop="117109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119282" stop="119153"/>
              <exon start="117853" stop="117624"/>
              <exon start="117531" stop="117440"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441194" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119282" stop="119153"/>
              <exon start="117853" stop="117624"/>
              <exon start="117531" stop="117441"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442330" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119234" stop="119153"/>
              <exon start="117853" stop="117624"/>
              <exon start="117531" stop="117439"/>
              <exon start="117296" stop="117050"/>
              <exon start="114720" stop="114705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739888" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119224" stop="119153"/>
              <exon start="117853" stop="117624"/>
              <exon start="117531" stop="117439"/>
              <exon start="117296" stop="117069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284494" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117849" stop="117624"/>
              <exon start="117531" stop="117439"/>
              <exon start="117296" stop="117066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279534" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAGGCAAAAAAATAAACATAGTATTATTATATTGACACCAACTTTAACAAAACCAACAAAATTCTTTGGAGGGTATTAAGCCGTCGCTTATCTTCATCTTCTTCCTCTGATTCTGTACATTTTTCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGCAGACACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTATTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGAAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGATTCTGTTGCTGACCTTAGGAAGAATCTACAGGCAAGAGGGTCTGATCTTGTTGTTAGAATTGGGAAGCCGGAGACTGTGTTGGTGGAATTAGCTAAAGCTGTTGGAGCTGAAGCTGTGTATGCTCATAGGGAGGTTTCACATGATGAGGTTAAAGGGGAAGATAAGATTGATGCTGTAATGAAGGATGAGGGTTTGGAGGTGAAGTATTTCTGGGGTAGTACATTGTATCATGTTGATGATTTGCCTTTTAAGTTGGAGCAAATGCCTACGAATTACGGAGGCTTTAGGGAGAAAGTGCAGGGATTGGAGGTAAGGAAGACAATTGAGGCATTGGATCAATTGAGGGGATTGCCTGCTAGAGGTGATGTGGAACCTGGGGAGATTCCTTCGTTGGTTGATTTGGGGCTCAATCCTAGTGCCACCATGGGTCAG : AATGGAAAATCAGCTGCTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAAAGACTTAGAAAATTTGCAGCAGAATGTCAGGCCCAACCCAGTAAGGAAAACAAGGATGGCACAAATGACAGCATATATGGTGCAAACTTTTCTTGCAAAATATCGCCTTGGTTAGCTATGGGATGTCTCTCACCCCGTTCCATGTTTGATGAATTGAAGAAGTCCACTTCAAG : AACGATTTCTGCTGCCTCTGCCAAGAAAGATGGTGGTAGTGGCACTGGGCTGAACTGGCTGATGTACGAGCTGTTATGGAGGGATTTTTTCAG : ATTCATCACCAAGAAATATAGTGCTGCAAAACAAAATAGTGCTGCTCCAGTAACTACTTGCGTAGGAGCTGCTGCTTAACGATGGTATACTCAAAAGGAGAATGAAGGTTTCCTTTTTGTAGCTTGATTTATTTTTTCCGGAAGTTTAGCTGTGGAATGTTAGAGTTGGACTGCCATTGAATTGAAGCATTTTTTCTTTTGACAATAAGTGTTGAGACATAAAAGAATTTGTCGCCATTTCTAGCAA : CAAACTGCAAAAACAA</gDNA_template>
            <first_frame> *  A  K  K  *  T  *  Y  Y  Y  I  D  T  N  F  N  K  T  N  K  I  L  W  R  V  L  S  R  R  L  S  S  S  S  S  S  D  S  V  H  F  S  H  R  K  T  H  Q  K  W  I  Q  R  I  N  F  P  I  T  Q  K  P  K  H  L  K  K  N  N  S  R  H  P  F  Y  R  *  L  Q  F  H  L  L  Y  P  Q  S  F  Q  P  I  S  L  I  L  L  K  S  Q  P  F  S  T  N  Q  T  K  S  K  S  Q  L  K  F  H  L  L  Q  I  S  H  F  Q  L  L  L  F  H  L  Q  I  P  N  S  S  P  L  F  L  L  T  L  F  R  I  L  *  L  L  T  L  F  V  L  L  S  L  L  M  L  L  G  F  D  E  R  R  L  F  G  S  V  T  I  F  V  F  M  I  M  S  V  L  T  R  L  I  M  S  P  C  L  Y  W  L  F  T  V  L  T  R  E  I  M  E  N  P  H  L  G  L  I  K  L  G  R  I  G  L  V  F  *  L  I  L  L  L  T  L  G  R  I  Y  R  Q  E  G  L  I  L  L  L  E  L  G  S  R  R  L  C  W  W  N  *  L  K  L  L  E  L  K  L  C  M  L  I  G  R  F  H  M  M  R  L  K  G  K  I  R  L  M  L  *  *  R  M  R  V  W  R  *  S  I  S  G  V  V  H  C  I  M  L  M  I  C  L  L  S  W  S  K  C  L  R  I  T  E  A  L  G  R  K  C  R  D  W  R  *  G  R  Q  L  R  H  W  I  N  *  G  D  C  L  L  E  V  M  W  N  L  G  R  F  L  R  W  L  I  W  G  S  I  L  V  P  P  W  V  R :   M  E  N  Q  L  L  M  L  P  L  W  E  E  R  M  K  H  C  K  D  L  E  N  L  Q  Q  N  V  R  P  N  P  V  R  K  T  R  M  A  Q  M  T  A  Y  M  V  Q  T  F  L  A  K  Y  R  L  G  *  L  W  D  V  S  H  P  V  P  C  L  M  N  *  R  S  P  L  Q   : E  R  F  L  L  P  L  P  R  K  M  V  V  V  A  L  G  *  T  G  *  C  T  S  C  Y  G  G  I  F  S   : D  S  S  P  R  N  I  V  L  Q  N  K  I  V  L  L  Q  *  L  L  A  *  E  L  L  L  N  D  G  I  L  K  R  R  M  K  V  S  F  L  *  L  D  L  F  F  P  E  V  *  L  W  N  V  R  V  G  L  P  L  N  *  S  I  F  S  F  D  N  K  C  *  D  I  K  E  F  V  A  I  S  S  N :   K  L  Q  K  Q </first_frame>
            <second_frame>  R  Q  K  N  K  H  S  I  I  I  L  T  P  T  L  T  K  P  T  K  F  F  G  G  Y  *  A  V  A  Y  L  H  L  L  P  L  I  L  Y  I  F  L  T  G  K  L  I  R  N  G  S  K  E  S  I  F  R  *  L  R  S  P  N  T  S  R  R  T  T  A  D  T  H  F  T  D  S  F  N  F  T  C  F  I  H  N  P  S  N  P  F  P  *  S  S  *  N  L  N  P  F  Q  Q  T  K  Q  S  Q  N  P  N  S  S  F  I  S  Y  K  S  L  T  F  S  F  F  S  S  T  Y  K  F  Q  I  Q  V  H  Y  F  C  *  P  S  S  E  Y  S  N  S  *  P  S  S  S  F  *  A  F  *  C  C  W  A  S  T  S  V  D  C  L  V  P  *  R  S  S  C  S  *  *  *  V  S  *  R  G  S  *  *  V  H  V  C  I  G  C  L  L  F  *  P  E  R  L  W  K  I  L  I  W  V  *  *  N  W  A  V  *  G  *  F  F  D  *  F  C  C  *  P  *  E  E  S  T  G  K  R  V  *  S  C  C  *  N  W  E  A  G  D  C  V  G  G  I  S  *  S  C  W  S  *  S  C  V  C  S  *  G  G  F  T  *  *  G  *  R  G  R  *  D  *  C  C  N  E  G  *  G  F  G  G  E  V  F  L  G  *  Y  I  V  S  C  *  *  F  A  F  *  V  G  A  N  A  Y  E  L  R  R  L  *  G  E  S  A  G  I  G  G  K  E  D  N  *  G  I  G  S  I  E  G  I  A  C  *  R  *  C  G  T  W  G  D  S  F  V  G  *  F  G  A  Q  S  *  C  H  H  G  S   : E  W  K  I  S  C  *  C  F  P  C  G  R  R  E  *  S  T  A  K  T  *  K  I  C  S  R  M  S  G  P  T  Q  *  G  K  Q  G  W  H  K  *  Q  H  I  W  C  K  L  F  L  Q  N  I  A  L  V  S  Y  G  M  S  L  T  P  F  H  V  *  *  I  E  E  V  H  F  K  :  N  D  F  C  C  L  C  Q  E  R  W  W  *  W  H  W  A  E  L  A  D  V  R  A  V  M  E  G  F  F  Q  :  I  H  H  Q  E  I  *  C  C  K  T  K  *  C  C  S  S  N  Y  L  R  R  S  C  C  L  T  M  V  Y  S  K  G  E  *  R  F  P  F  C  S  L  I  Y  F  F  R  K  F  S  C  G  M  L  E  L  D  C  H  *  I  E  A  F  F  L  L  T  I  S  V  E  T  *  K  N  L  S  P  F  L  A   : T  N  C  K  N   </second_frame>
            <third_frame>   G  K  K  I  N  I  V  L  L  Y  *  H  Q  L  *  Q  N  Q  Q  N  S  L  E  G  I  K  P  S  L  I  F  I  F  F  L  *  F  C  T  F  F  S  P  E  N  S  S  E  M  D  P  K  N  Q  F  S  D  N  S  E  A  Q  T  P  Q  E  E  Q  Q  Q  T  P  I  L  P  I  A  S  I  S  L  A  L  S  T  I  L  P  T  H  F  L  N  P  P  K  I  S  T  L  F  N  K  P  N  K  V  K  I  P  T  Q  V  S  S  L  T  N  L  S  L  S  A  S  S  L  P  P  T  N  S  K  F  K  S  T  I  S  A  N  P  L  Q  N  T  L  T  L  N  P  L  R  P  S  E  P  S  N  A  A  G  L  R  R  A  S  I  V  W  F  R  N  D  L  R  V  H  D  N  E  C  L  N  A  A  H  N  E  S  M  S  V  L  A  V  Y  C  F  D  P  R  D  Y  G  K  S  S  S  G  F  D  K  T  G  P  Y  R  A  S  F  L  I  D  S  V  A  D  L  R  K  N  L  Q  A  R  G  S  D  L  V  V  R  I  G  K  P  E  T  V  L  V  E  L  A  K  A  V  G  A  E  A  V  Y  A  H  R  E  V  S  H  D  E  V  K  G  E  D  K  I  D  A  V  M  K  D  E  G  L  E  V  K  Y  F  W  G  S  T  L  Y  H  V  D  D  L  P  F  K  L  E  Q  M  P  T  N  Y  G  G  F  R  E  K  V  Q  G  L  E  V  R  K  T  I  E  A  L  D  Q  L  R  G  L  P  A  R  G  D  V  E  P  G  E  I  P  S  L  V  D  L  G  L  N  P  S  A  T  M  G  Q  :  N  G  K  S  A  A  N  A  S  L  V  G  G  E  N  E  A  L  Q  R  L  R  K  F  A  A  E  C  Q  A  Q  P  S  K  E  N  K  D  G  T  N  D  S  I  Y  G  A  N  F  S  C  K  I  S  P  W  L  A  M  G  C  L  S  P  R  S  M  F  D  E  L  K  K  S  T  S  R :   T  I  S  A  A  S  A  K  K  D  G  G  S  G  T  G  L  N  W  L  M  Y  E  L  L  W  R  D  F  F  R :   F  I  T  K  K  Y  S  A  A  K  Q  N  S  A  A  P  V  T  T  C  V  G  A  A  A  *  R  W  Y  T  Q  K  E  N  E  G  F  L  F  V  A  *  F  I  F  S  G  S  L  A  V  E  C  *  S  W  T  A  I  E  L  K  H  F  F  F  *  Q  *  V  L  R  H  K  R  I  C  R  H  F  *  Q  :  Q  T  A  K  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0038L16.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120145" stop="119153"/>
                    <exon start="117853" stop="117624"/>
                    <exon start="117531" stop="117439"/>
                    <exon start="117296" stop="117218"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1392</number_coding_nucleotides>
                  <number_encoded_amino_acids>464</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FCTFFSPENSSEMDPKNQFSDNSEAQTPQEEQQQTPILPIASISLALSTILPTHFLNPPKISTLFNKPNKVKIPTQVSSLTNLSLSASSLPPTNSKFKSTISANPLQNTLTLNPLRPSEPSNAAGLRRASIVWFRNDLRVHDNECLNAAHNESMSVLAVYCFDPRDYGKSSSGFDKTGPYRASFLIDSVADLRKNLQARGSDLVVRIGKPETVLVELAKAVGAEAVYAHREVSHDEVKGEDKIDAVMKDEGLEVKYFWGSTLYHVDDLPFKLEQMPTNYGGFREKVQGLEVRKTIEALDQLRGLPARGDVEPGEIPSLVDLGLNPSATMGQNGKSAANASLVGGENEALQRLRKFAAECQAQPSKENKDGTNDSIYGANFSCKISPWLAMGCLSPRSMFDELKKSTSRTISAASAKKDGGSGTGLNWLMYELLWRDFFRFITKKYSAAKQNSAAPVTTCVGAAA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="120223" e_stop="119794"/>
            <exon e_start="119478" e_stop="119153"/>
            <exon e_start="117853" e_stop="117624"/>
            <exon e_start="117531" e_stop="117439"/>
            <exon e_start="117296" e_stop="116850"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.902"/>
          <exon-intron don_prob="0.941" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.881" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.977" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.902">
            <gDNA_exon_boundary e_start="120223" e_stop="119794" e_length="430"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="119793" i_stop="119479" i_length="315"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="119478" e_stop="119153" e_length="326"/>
          </exon>
          <intron i_serial="2" don_prob="0.941" acc_prob="0.998">
            <gDNA_intron_boundary i_start="119152" i_stop="117854" i_length="1299"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="117853" e_stop="117624" e_length="230"/>
          </exon>
          <intron i_serial="3" don_prob="0.881" acc_prob="0.996">
            <gDNA_intron_boundary i_start="117623" i_stop="117532" i_length="92"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="117531" e_stop="117439" e_length="93"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.977">
            <gDNA_intron_boundary i_start="117438" i_stop="117297" i_length="142"/>
          </intron>
          <exon e_serial="5" e_score="0.997">
            <gDNA_exon_boundary e_start="117296" e_stop="116850" e_length="447"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120223" stop="119794"/>
              <exon start="119478" stop="119315"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449110" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120209" stop="119878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283968" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120207" stop="119799"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445724" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119395" stop="119153"/>
              <exon start="117853" stop="117624"/>
              <exon start="117531" stop="117439"/>
              <exon start="117296" stop="117197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344812" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119362" stop="119153"/>
              <exon start="117853" stop="117624"/>
              <exon start="117531" stop="117439"/>
              <exon start="117296" stop="117216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404669" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119350" stop="119153"/>
              <exon start="117853" stop="117624"/>
              <exon start="117531" stop="117439"/>
              <exon start="117296" stop="117109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573355" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119282" stop="119153"/>
              <exon start="117853" stop="117624"/>
              <exon start="117531" stop="117439"/>
              <exon start="117296" stop="117109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418599" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119282" stop="119153"/>
              <exon start="117853" stop="117624"/>
              <exon start="117531" stop="117439"/>
              <exon start="117296" stop="117109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119282" stop="119153"/>
              <exon start="117853" stop="117624"/>
              <exon start="117531" stop="117440"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441194" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119282" stop="119153"/>
              <exon start="117853" stop="117624"/>
              <exon start="117531" stop="117441"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442330" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119224" stop="119153"/>
              <exon start="117853" stop="117624"/>
              <exon start="117531" stop="117439"/>
              <exon start="117296" stop="117069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284494" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117849" stop="117624"/>
              <exon start="117531" stop="117439"/>
              <exon start="117296" stop="117066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279534" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117631" stop="117624"/>
              <exon start="117531" stop="117439"/>
              <exon start="117296" stop="116956"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226505" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117214" stop="116956"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226906" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117181" stop="116850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390468" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117181" stop="116851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390093" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117181" stop="116851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390094" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117181" stop="116851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390607" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117181" stop="116852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390848" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117180" stop="116851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285047" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGACACCAACTTTAACAAAACCAACAAAATTCTTTGGAGGGTATTAAGCCGTCGCTTATCTTCATCTTCTTCCTCTGATTCTGTACATTTTTCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGCAGACACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTT : CTGAAGCTGTGTATGCTCATAGGGAGGTTTCACATGATGAGGTTAAAGGGGAAGATAAGATTGATGCTGTAATGAAGGATGAGGGTTTGGAGGTGAAGTATTTCTGGGGTAGTACATTGTATCATGTTGATGATTTGCCTTTTAAGTTGGAGCAAATGCCTACGAATTACGGAGGCTTTAGGGAGAAAGTGCAGGGATTGGAGGTAAGGAAGACAATTGAGGCATTGGATCAATTGAGGGGATTGCCTGCTAGAGGTGATGTGGAACCTGGGGAGATTCCTTCGTTGGTTGATTTGGGGCTCAATCCTAGTGCCACCATGGGTCAG : AATGGAAAATCAGCTGCTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAAAGACTTAGAAAATTTGCAGCAGAATGTCAGGCCCAACCCAGTAAGGAAAACAAGGATGGCACAAATGACAGCATATATGGTGCAAACTTTTCTTGCAAAATATCGCCTTGGTTAGCTATGGGATGTCTCTCACCCCGTTCCATGTTTGATGAATTGAAGAAGTCCACTTCAAG : AACGATTTCTGCTGCCTCTGCCAAGAAAGATGGTGGTAGTGGCACTGGGCTGAACTGGCTGATGTACGAGCTGTTATGGAGGGATTTTTTCAG : ATTCATCACCAAGAAATATAGTGCTGCAAAACAAAATAGTGCTGCTCCAGTAACTACTTGCGTAGGAGCTGCTGCTTAACGATGGTATACTCAAAAGGAGAATGAAGGTTTCCTTTTTGTAGCTTGATTTATTTTTTCCGGAAGTTTAGCTGTGGAATGTTAGAGTTGGACTGCCATTGAATTGAAGCATTTTTTCTTTTGACAATAAGTGTTGAGACATAAAAGAATTTGTCGCCATTTCTAGCAAGTCGCTCTACAATCCTTCTTATGCTAGTATTTATATATTTTTGATTTCATCTGTAGTTGAAACAGGTGTGATAACAAACATACCTGTAGTTGAAATATGTGTTCCATGTTTGAGATTACCATCCATCTTGAACCCGCGGAGAGTATCCTTGAGCATCAGATGATTTACTATTGATACTCATTTCAATGTAAACTAGTTCT</gDNA_template>
            <first_frame> *  H  Q  L  *  Q  N  Q  Q  N  S  L  E  G  I  K  P  S  L  I  F  I  F  F  L  *  F  C  T  F  F  S  P  E  N  S  S  E  M  D  P  K  N  Q  F  S  D  N  S  E  A  Q  T  P  Q  E  E  Q  Q  Q  T  P  I  L  P  I  A  S  I  S  L  A  L  S  T  I  L  P  T  H  F  L  N  P  P  K  I  S  T  L  F  N  K  P  N  K  V  K  I  P  T  Q  V  S  S  L  T  N  L  S  L  S  A  S  S  L  P  P  T  N  S  K  F  K  S  T  I  S  A  N  P  L  Q  N  T  L  T  L  N  P  L  R  P   : S  E  A  V  Y  A  H  R  E  V  S  H  D  E  V  K  G  E  D  K  I  D  A  V  M  K  D  E  G  L  E  V  K  Y  F  W  G  S  T  L  Y  H  V  D  D  L  P  F  K  L  E  Q  M  P  T  N  Y  G  G  F  R  E  K  V  Q  G  L  E  V  R  K  T  I  E  A  L  D  Q  L  R  G  L  P  A  R  G  D  V  E  P  G  E  I  P  S  L  V  D  L  G  L  N  P  S  A  T  M  G  Q  :  N  G  K  S  A  A  N  A  S  L  V  G  G  E  N  E  A  L  Q  R  L  R  K  F  A  A  E  C  Q  A  Q  P  S  K  E  N  K  D  G  T  N  D  S  I  Y  G  A  N  F  S  C  K  I  S  P  W  L  A  M  G  C  L  S  P  R  S  M  F  D  E  L  K  K  S  T  S  R :   T  I  S  A  A  S  A  K  K  D  G  G  S  G  T  G  L  N  W  L  M  Y  E  L  L  W  R  D  F  F  R :   F  I  T  K  K  Y  S  A  A  K  Q  N  S  A  A  P  V  T  T  C  V  G  A  A  A  *  R  W  Y  T  Q  K  E  N  E  G  F  L  F  V  A  *  F  I  F  S  G  S  L  A  V  E  C  *  S  W  T  A  I  E  L  K  H  F  F  F  *  Q  *  V  L  R  H  K  R  I  C  R  H  F  *  Q  V  A  L  Q  S  F  L  C  *  Y  L  Y  I  F  D  F  I  C  S  *  N  R  C  D  N  K  H  T  C  S  *  N  M  C  S  M  F  E  I  T  I  H  L  E  P  A  E  S  I  L  E  H  Q  M  I  Y  Y  *  Y  S  F  Q  C  K  L  V   </first_frame>
            <second_frame>  D  T  N  F  N  K  T  N  K  I  L  W  R  V  L  S  R  R  L  S  S  S  S  S  S  D  S  V  H  F  S  H  R  K  T  H  Q  K  W  I  Q  R  I  N  F  P  I  T  Q  K  P  K  H  L  K  K  N  N  S  R  H  P  F  Y  R  *  L  Q  F  H  L  L  Y  P  Q  S  F  Q  P  I  S  L  I  L  L  K  S  Q  P  F  S  T  N  Q  T  K  S  K  S  Q  L  K  F  H  L  L  Q  I  S  H  F  Q  L  L  L  F  H  L  Q  I  P  N  S  S  P  L  F  L  L  T  L  F  R  I  L  *  L  L  T  L  F  V  L  :  L  K  L  C  M  L  I  G  R  F  H  M  M  R  L  K  G  K  I  R  L  M  L  *  *  R  M  R  V  W  R  *  S  I  S  G  V  V  H  C  I  M  L  M  I  C  L  L  S  W  S  K  C  L  R  I  T  E  A  L  G  R  K  C  R  D  W  R  *  G  R  Q  L  R  H  W  I  N  *  G  D  C  L  L  E  V  M  W  N  L  G  R  F  L  R  W  L  I  W  G  S  I  L  V  P  P  W  V  R :   M  E  N  Q  L  L  M  L  P  L  W  E  E  R  M  K  H  C  K  D  L  E  N  L  Q  Q  N  V  R  P  N  P  V  R  K  T  R  M  A  Q  M  T  A  Y  M  V  Q  T  F  L  A  K  Y  R  L  G  *  L  W  D  V  S  H  P  V  P  C  L  M  N  *  R  S  P  L  Q   : E  R  F  L  L  P  L  P  R  K  M  V  V  V  A  L  G  *  T  G  *  C  T  S  C  Y  G  G  I  F  S   : D  S  S  P  R  N  I  V  L  Q  N  K  I  V  L  L  Q  *  L  L  A  *  E  L  L  L  N  D  G  I  L  K  R  R  M  K  V  S  F  L  *  L  D  L  F  F  P  E  V  *  L  W  N  V  R  V  G  L  P  L  N  *  S  I  F  S  F  D  N  K  C  *  D  I  K  E  F  V  A  I  S  S  K  S  L  Y  N  P  S  Y  A  S  I  Y  I  F  L  I  S  S  V  V  E  T  G  V  I  T  N  I  P  V  V  E  I  C  V  P  C  L  R  L  P  S  I  L  N  P  R  R  V  S  L  S  I  R  *  F  T  I  D  T  H  F  N  V  N  *  F  </second_frame>
            <third_frame>   T  P  T  L  T  K  P  T  K  F  F  G  G  Y  *  A  V  A  Y  L  H  L  L  P  L  I  L  Y  I  F  L  T  G  K  L  I  R  N  G  S  K  E  S  I  F  R  *  L  R  S  P  N  T  S  R  R  T  T  A  D  T  H  F  T  D  S  F  N  F  T  C  F  I  H  N  P  S  N  P  F  P  *  S  S  *  N  L  N  P  F  Q  Q  T  K  Q  S  Q  N  P  N  S  S  F  I  S  Y  K  S  L  T  F  S  F  F  S  S  T  Y  K  F  Q  I  Q  V  H  Y  F  C  *  P  S  S  E  Y  S  N  S  *  P  S  S  S  F :   *  S  C  V  C  S  *  G  G  F  T  *  *  G  *  R  G  R  *  D  *  C  C  N  E  G  *  G  F  G  G  E  V  F  L  G  *  Y  I  V  S  C  *  *  F  A  F  *  V  G  A  N  A  Y  E  L  R  R  L  *  G  E  S  A  G  I  G  G  K  E  D  N  *  G  I  G  S  I  E  G  I  A  C  *  R  *  C  G  T  W  G  D  S  F  V  G  *  F  G  A  Q  S  *  C  H  H  G  S   : E  W  K  I  S  C  *  C  F  P  C  G  R  R  E  *  S  T  A  K  T  *  K  I  C  S  R  M  S  G  P  T  Q  *  G  K  Q  G  W  H  K  *  Q  H  I  W  C  K  L  F  L  Q  N  I  A  L  V  S  Y  G  M  S  L  T  P  F  H  V  *  *  I  E  E  V  H  F  K  :  N  D  F  C  C  L  C  Q  E  R  W  W  *  W  H  W  A  E  L  A  D  V  R  A  V  M  E  G  F  F  Q  :  I  H  H  Q  E  I  *  C  C  K  T  K  *  C  C  S  S  N  Y  L  R  R  S  C  C  L  T  M  V  Y  S  K  G  E  *  R  F  P  F  C  S  L  I  Y  F  F  R  K  F  S  C  G  M  L  E  L  D  C  H  *  I  E  A  F  F  L  L  T  I  S  V  E  T  *  K  N  L  S  P  F  L  A  S  R  S  T  I  L  L  M  L  V  F  I  Y  F  *  F  H  L  *  L  K  Q  V  *  *  Q  T  Y  L  *  L  K  Y  V  F  H  V  *  D  Y  H  P  S  *  T  R  G  E  Y  P  *  A  S  D  D  L  L  L  I  L  I  S  M  *  T  S  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0038L16.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120145" stop="119794"/>
                    <exon start="119478" stop="119153"/>
                    <exon start="117853" stop="117624"/>
                    <exon start="117531" stop="117439"/>
                    <exon start="117296" stop="117218"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1077</number_coding_nucleotides>
                  <number_encoded_amino_acids>359</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FCTFFSPENSSEMDPKNQFSDNSEAQTPQEEQQQTPILPIASISLALSTILPTHFLNPPKISTLFNKPNKVKIPTQVSSLTNLSLSASSLPPTNSKFKSTISANPLQNTLTLNPLRPSEAVYAHREVSHDEVKGEDKIDAVMKDEGLEVKYFWGSTLYHVDDLPFKLEQMPTNYGGFREKVQGLEVRKTIEALDQLRGLPARGDVEPGEIPSLVDLGLNPSATMGQNGKSAANASLVGGENEALQRLRKFAAECQAQPSKENKDGTNDSIYGANFSCKISPWLAMGCLSPRSMFDELKKSTSRTISAASAKKDGGSGTGLNWLMYELLWRDFFRFITKKYSAAKQNSAAPVTTCVGAAA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0038L16.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="117081" stop="116887"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DIKEFVAISSKSLYNPSYASIYIFLISSVVETGVITNIPVVEICVPCLRLPSILNPRRVSLSIR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="115551" PGL_stop="116066"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="115551" e_stop="116066"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.950"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.950">
            <gDNA_exon_boundary e_start="115551" e_stop="116066" e_length="516"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115551" stop="116066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115551" stop="115912"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447641" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCTATGGCATCGAACTGTCGATTGTTTCACTTGGAATACTCTGATCAGAGCCTATGTTCAACGAACTCATCAACCTTCAAGCCCCACCCATACCCCACTCTCCATCTTCCTCCGAATGCGCTTCCATGGCGTCCATATTGATTACTACACCTTCCCTTTTCTCCTCCAGTCCGTCCATTCTCCACTACACCTCCAATTGGGACGATCCATTCACTCACAAGTTCTTATTTTCGGTTTTTCATCCGACCCATTTGTCCAAACTTCGCTAATCAGTATGTACACTGCTTGCGGCGATGTGGGTTCTGCACGGGAGGTGTTTGATGAAATGTCTCAACGAGACTTGCCTGCGTGGAATTCTATTGTGAATGCGAATGTGAAAGCAGGTTTGCTTAGTGTTGCGCGTGAACTGTTTGTTAAAATGCCTAGTAGAAATGTTGTGTCTTGGAGTAGTATGTTGGATGGTTATGTGAGGTGGGGTAAGTGTGAAGAAGCATTGGAGTTGTTTAATCAGATGA</gDNA_template>
            <first_frame> I  Y  G  I  E  L  S  I  V  S  L  G  I  L  *  S  E  P  M  F  N  E  L  I  N  L  Q  A  P  P  I  P  H  S  P  S  S  S  E  C  A  S  M  A  S  I  L  I  T  T  P  S  L  F  S  S  S  P  S  I  L  H  Y  T  S  N  W  D  D  P  F  T  H  K  F  L  F  S  V  F  H  P  T  H  L  S  K  L  R  *  S  V  C  T  L  L  A  A  M  W  V  L  H  G  R  C  L  M  K  C  L  N  E  T  C  L  R  G  I  L  L  *  M  R  M  *  K  Q  V  C  L  V  L  R  V  N  C  L  L  K  C  L  V  E  M  L  C  L  G  V  V  C  W  M  V  M  *  G  G  V  S  V  K  K  H  W  S  C  L  I  R  * </first_frame>
            <second_frame>  S  M  A  S  N  C  R  L  F  H  L  E  Y  S  D  Q  S  L  C  S  T  N  S  S  T  F  K  P  H  P  Y  P  T  L  H  L  P  P  N  A  L  P  W  R  P  Y  *  L  L  H  L  P  F  S  P  P  V  R  P  F  S  T  T  P  P  I  G  T  I  H  S  L  T  S  S  Y  F  R  F  F  I  R  P  I  C  P  N  F  A  N  Q  Y  V  H  C  L  R  R  C  G  F  C  T  G  G  V  *  *  N  V  S  T  R  L  A  C  V  E  F  Y  C  E  C  E  C  E  S  R  F  A  *  C  C  A  *  T  V  C  *  N  A  *  *  K  C  C  V  L  E  *  Y  V  G  W  L  C  E  V  G  *  V  *  R  S  I  G  V  V  *  S  D   </second_frame>
            <third_frame>   L  W  H  R  T  V  D  C  F  T  W  N  T  L  I  R  A  Y  V  Q  R  T  H  Q  P  S  S  P  T  H  T  P  L  S  I  F  L  R  M  R  F  H  G  V  H  I  D  Y  Y  T  F  P  F  L  L  Q  S  V  H  S  P  L  H  L  Q  L  G  R  S  I  H  S  Q  V  L  I  F  G  F  S  S  D  P  F  V  Q  T  S  L  I  S  M  Y  T  A  C  G  D  V  G  S  A  R  E  V  F  D  E  M  S  Q  R  D  L  P  A  W  N  S  I  V  N  A  N  V  K  A  G  L  L  S  V  A  R  E  L  F  V  K  M  P  S  R  N  V  V  S  W  S  S  M  L  D  G  Y  V  R  W  G  K  C  E  E  A  L  E  L  F  N  Q  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0038L16.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="115553" stop="116065"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>513</number_coding_nucleotides>
                  <number_encoded_amino_acids>171</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LWHRTVDCFTWNTLIRAYVQRTHQPSSPTHTPLSIFLRMRFHGVHIDYYTFPFLLQSVHSPLHLQLGRSIHSQVLIFGFSSDPFVQTSLISMYTACGDVGSAREVFDEMSQRDLPAWNSIVNANVKAGLLSVARELFVKMPSRNVVSWSSMLDGYVRWGKCEEALELFNQM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="119749" PGL_stop="120422"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="119749" e_stop="120422"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="119749" e_stop="120422" e_length="674"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119749" stop="119993"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392372" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119750" stop="120258"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201782" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120086" stop="120422"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392622" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAACAATCGACGCTCGTCGAAGCCCAGCAGCATTAGAAGGCTCAGAAGGACGAAGAGGGTTAAGAGTTAGAGTATTCTGAAGAGGGTTAGCAGAAATAGTGGACTTGAATTTGGAATTTGTAGGTGGAAGAGAAGAAGCTGAAAGTGAGAGATTTGTAAGAGATGAAACTTGAGTTGGGATTTTGACTTTGTTTGGTTTGTTGAAAAGGGTTGAGATTTTAGGAGGATTAAGGAAATGGGTTGGAAGGATTGTGGATAAAGCAAGTGAAATTGAAGCTATCGGTAAAATGGGTGTCTGCTGTTGTTCTTCTTGAGGTGTTTGGGCTTCTGAGTTATCGGAAAATTGATTCTTTGGATCCATTTCTGATGAGTTTTCCGGTGAGAAAAATGTACAGAATCAGAGGAAGAAGATGAAGATAAGCGACGGCTTAATACCCTCCAAAGAATTTTGTTGGTTTTGTTAAAGTTGGTGTCAATATAATAATACTATGTTTATTTTTTTGCCTATTTGTTGTGTTAGGTGGGTGAGGTGTTTATAGAGGTTGGTAGAGGTGGATGTATCAATTTAAGAGTGGATAAATTTTTGTACGAGTCAATTTATTTGTCTGATTTTGAATCGATATGAAATTTAAGAAAATCAAATAACTATCTAAAATAGAGAGATTATTTTTGAT</gDNA_template>
            <first_frame> K  Q  S  T  L  V  E  A  Q  Q  H  *  K  A  Q  K  D  E  E  G  *  E  L  E  Y  S  E  E  G  *  Q  K  *  W  T  *  I  W  N  L  *  V  E  E  K  K  L  K  V  R  D  L  *  E  M  K  L  E  L  G  F  *  L  C  L  V  C  *  K  G  L  R  F  *  E  D  *  G  N  G  L  E  G  L  W  I  K  Q  V  K  L  K  L  S  V  K  W  V  S  A  V  V  L  L  E  V  F  G  L  L  S  Y  R  K  I  D  S  L  D  P  F  L  M  S  F  P  V  R  K  M  Y  R  I  R  G  R  R  *  R  *  A  T  A  *  Y  P  P  K  N  F  V  G  F  V  K  V  G  V  N  I  I  I  L  C  L  F  F  C  L  F  V  V  L  G  G  *  G  V  Y  R  G  W  *  R  W  M  Y  Q  F  K  S  G  *  I  F  V  R  V  N  L  F  V  *  F  *  I  D  M  K  F  K  K  I  K  *  L  S  K  I  E  R  L  F  L   </first_frame>
            <second_frame>  N  N  R  R  S  S  K  P  S  S  I  R  R  L  R  R  T  K  R  V  K  S  *  S  I  L  K  R  V  S  R  N  S  G  L  E  F  G  I  C  R  W  K  R  R  S  *  K  *  E  I  C  K  R  *  N  L  S  W  D  F  D  F  V  W  F  V  E  K  G  *  D  F  R  R  I  K  E  M  G  W  K  D  C  G  *  S  K  *  N  *  S  Y  R  *  N  G  C  L  L  L  F  F  L  R  C  L  G  F  *  V  I  G  K  L  I  L  W  I  H  F  *  *  V  F  R  *  E  K  C  T  E  S  E  E  E  D  E  D  K  R  R  L  N  T  L  Q  R  I  L  L  V  L  L  K  L  V  S  I  *  *  Y  Y  V  Y  F  F  A  Y  L  L  C  *  V  G  E  V  F  I  E  V  G  R  G  G  C  I  N  L  R  V  D  K  F  L  Y  E  S  I  Y  L  S  D  F  E  S  I  *  N  L  R  K  S  N  N  Y  L  K  *  R  D  Y  F  *  </second_frame>
            <third_frame>   T  I  D  A  R  R  S  P  A  A  L  E  G  S  E  G  R  R  G  L  R  V  R  V  F  *  R  G  L  A  E  I  V  D  L  N  L  E  F  V  G  G  R  E  E  A  E  S  E  R  F  V  R  D  E  T  *  V  G  I  L  T  L  F  G  L  L  K  R  V  E  I  L  G  G  L  R  K  W  V  G  R  I  V  D  K  A  S  E  I  E  A  I  G  K  M  G  V  C  C  C  S  S  *  G  V  W  A  S  E  L  S  E  N  *  F  F  G  S  I  S  D  E  F  S  G  E  K  N  V  Q  N  Q  R  K  K  M  K  I  S  D  G  L  I  P  S  K  E  F  C  W  F  C  *  S  W  C  Q  Y  N  N  T  M  F  I  F  L  P  I  C  C  V  R  W  V  R  C  L  *  R  L  V  E  V  D  V  S  I  *  E  W  I  N  F  C  T  S  Q  F  I  C  L  I  L  N  R  Y  E  I  *  E  N  Q  I  T  I  *  N  R  E  I  I  F  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0038L16.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="124798" PGL_stop="121987"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="124798" e_stop="124776"/>
            <exon e_start="124178" e_stop="124090"/>
            <exon e_start="123199" e_stop="123046"/>
            <exon e_start="122468" e_stop="122346"/>
            <exon e_start="122266" e_stop="121987"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.882" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.992" e_score="0.978"/>
          <exon-intron don_prob="0.990" acc_prob="0.993" e_score="0.987"/>
          <exon-intron don_prob="0.978" acc_prob="1.000" e_score="0.976"/>
          <exon-only e_score="0.911"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="124798" e_stop="124776" e_length="23"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.882">
            <gDNA_intron_boundary i_start="124775" i_stop="124179" i_length="597"/>
          </intron>
          <exon e_serial="2" e_score="0.978">
            <gDNA_exon_boundary e_start="124178" e_stop="124090" e_length="89"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.992">
            <gDNA_intron_boundary i_start="124089" i_stop="123200" i_length="890"/>
          </intron>
          <exon e_serial="3" e_score="0.987">
            <gDNA_exon_boundary e_start="123199" e_stop="123046" e_length="154"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="0.993">
            <gDNA_intron_boundary i_start="123045" i_stop="122469" i_length="577"/>
          </intron>
          <exon e_serial="4" e_score="0.976">
            <gDNA_exon_boundary e_start="122468" e_stop="122346" e_length="123"/>
          </exon>
          <intron i_serial="4" don_prob="0.978" acc_prob="1.000">
            <gDNA_intron_boundary i_start="122345" i_stop="122267" i_length="79"/>
          </intron>
          <exon e_serial="5" e_score="0.911">
            <gDNA_exon_boundary e_start="122266" e_stop="121987" e_length="280"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124798" stop="124776"/>
              <exon start="124178" stop="124090"/>
              <exon start="123199" stop="123046"/>
              <exon start="122468" stop="122346"/>
              <exon start="122266" stop="122027"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E605059" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122378" stop="122346"/>
              <exon start="122266" stop="121987"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E592993" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAATCTTCAATTCTATATTCAG : GTGGATGTGATAGAATCTCAGTGGAACGTTTTGCAATCTCACATTCAGAATTCTCATGATTTCACGGAACTTGTGGGCTTTCATCAAGA : ATACTTGGCTGCGCTAATTTCACAATCTTTCTTGGACATCGGTTCTGTCTCAAGAATTCTGGATGGAATCATGAAACTATGCTTGCAGTTCTGTTGGAAGATCGAAAATGACGAAAGCAATAGAACTACTAGTGAACTGGAGCACATAGCTGAG : GAGTTCAACAAAAAATCAAACTCCCTATACACGATACTTCGAAGTAGCAGGCTTGCTGGGAGCCAGAGAGCTCCATTCCTTAGACAATTTCTTTTGAGACTCAACTTCAATTCCTTCTTTGAG : GCAACTGCAAGAGGGGTGCTCAACGTTGTCAACCCTCGCCCATCCGTATCTGTTCTGCAGTGACAATTTCTTCTTCTTAAAGCCACCCAATCTAATTTTTCTGTAAGCCTTCCTTTGTCTGCTAGTTTTTTCCTTCTTTTCCCTGTGTGCGCATGTGTTTTTACATGCCTCTGTAAGTCGTCACATTTAGAATTGACGTATAGTTGATTGATTATATAAACGATTGCTGTAGCCTGTAAGCAGTAAGAACGTCTGCTACCTTTCCTTGCAATTTCAGCTG</gDNA_template>
            <first_frame> E  I  F  N  S  I  F  R :   W  M  *  *  N  L  S  G  T  F  C  N  L  T  F  R  I  L  M  I  S  R  N  L  W  A  F  I  K   : N  T  W  L  R  *  F  H  N  L  S  W  T  S  V  L  S  Q  E  F  W  M  E  S  *  N  Y  A  C  S  S  V  G  R  S  K  M  T  K  A  I  E  L  L  V  N  W  S  T  *  L  R :   S  S  T  K  N  Q  T  P  Y  T  R  Y  F  E  V  A  G  L  L  G  A  R  E  L  H  S  L  D  N  F  F  *  D  S  T  S  I  P  S  L  R :   Q  L  Q  E  G  C  S  T  L  S  T  L  A  H  P  Y  L  F  C  S  D  N  F  F  F  L  K  P  P  N  L  I  F  L  *  A  F  L  C  L  L  V  F  S  F  F  S  L  C  A  H  V  F  L  H  A  S  V  S  R  H  I  *  N  *  R  I  V  D  *  L  Y  K  R  L  L  *  P  V  S  S  K  N  V  C  Y  L  S  L  Q  F  Q  L </first_frame>
            <second_frame>  K  S  S  I  L  Y  S   : G  G  C  D  R  I  S  V  E  R  F  A  I  S  H  S  E  F  S  *  F  H  G  T  C  G  L  S  S  R  :  I  L  G  C  A  N  F  T  I  F  L  G  H  R  F  C  L  K  N  S  G  W  N  H  E  T  M  L  A  V  L  L  E  D  R  K  *  R  K  Q  *  N  Y  *  *  T  G  A  H  S  *   : G  V  Q  Q  K  I  K  L  P  I  H  D  T  S  K  *  Q  A  C  W  E  P  E  S  S  I  P  *  T  I  S  F  E  T  Q  L  Q  F  L  L  *   : G  N  C  K  R  G  A  Q  R  C  Q  P  S  P  I  R  I  C  S  A  V  T  I  S  S  S  *  S  H  P  I  *  F  F  C  K  P  S  F  V  C  *  F  F  P  S  F  P  C  V  R  M  C  F  Y  M  P  L  *  V  V  T  F  R  I  D  V  *  L  I  D  Y  I  N  D  C  C  S  L  *  A  V  R  T  S  A  T  F  P  C  N  F  S   </second_frame>
            <third_frame>   N  L  Q  F  Y  I  Q  :  V  D  V  I  E  S  Q  W  N  V  L  Q  S  H  I  Q  N  S  H  D  F  T  E  L  V  G  F  H  Q  E :   Y  L  A  A  L  I  S  Q  S  F  L  D  I  G  S  V  S  R  I  L  D  G  I  M  K  L  C  L  Q  F  C  W  K  I  E  N  D  E  S  N  R  T  T  S  E  L  E  H  I  A  E  :  E  F  N  K  K  S  N  S  L  Y  T  I  L  R  S  S  R  L  A  G  S  Q  R  A  P  F  L  R  Q  F  L  L  R  L  N  F  N  S  F  F  E  :  A  T  A  R  G  V  L  N  V  V  N  P  R  P  S  V  S  V  L  Q  *  Q  F  L  L  L  K  A  T  Q  S  N  F  S  V  S  L  P  L  S  A  S  F  F  L  L  F  P  V  C  A  C  V  F  T  C  L  C  K  S  S  H  L  E  L  T  Y  S  *  L  I  I  *  T  I  A  V  A  C  K  Q  *  E  R  L  L  P  F  L  A  I  S  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0038L16.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="124796" stop="124776"/>
                    <exon start="124178" stop="124090"/>
                    <exon start="123199" stop="123046"/>
                    <exon start="122468" stop="122346"/>
                    <exon start="122266" stop="122204"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>447</number_coding_nucleotides>
                  <number_encoded_amino_acids>149</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NLQFYIQVDVIESQWNVLQSHIQNSHDFTELVGFHQEYLAALISQSFLDIGSVSRILDGIMKLCLQFCWKIENDESNRTTSELEHIAEEFNKKSNSLYTILRSSRLAGSQRAPFLRQFLLRLNFNSFFEATARGVLNVVNPRPSVSVLQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 340 chains have been computed
$ 
$ memory statistics:
$ 885464 bytes spliced alignments in total
$ 255 spliced alignments have been stored
$ 3472 bytes was the average size of a spliced alignment
$ 33400 bytes predicted gene locations in total
$ 17 predicted gene locations have been stored
$ 1964 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 379 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 13:14:58
-->
