<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 13:15:03"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U329295" ref_strand="+" ref_description="SGN-U329295        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related, weak similarity to tripartite motif protein TRIM13 (Mus musculus) GI:12407427, gpStaf50 (Homo sapiens) GI:899300; contains Pfam profiles PF03105: SPX domain, PF00097: Zinc finger, C3HC4 type (RING finger) | chr1:635144-637262 FORWARD | Aliases: F22D16.14, F22D16_14(evalue: 4e-48, score=188) genbank/nr: Zinc(evalue: 1e-47, score=192)">
      <seq>agagaactagtctctgattttttttttcaaattaattaatttgtgatcatcacaattgtcatgtgtaagtgattccgccattaaaggatacagatatagtcagtgtttccgccattaaagtagataaacagtgaggaaaaacaaacggagatttttcagtattttttttttcactattaagtgctcgcagtttgtttgtttgttttttgggaaaattctcagatttggaacaattttttgaattttggaaatgaagttttgtaagaaatatgaggagtatatggaagggcaatgccggaataagaagttgccgcgggtaggtttgaagaaattgaagaaaattttgaagagatgtcgaaaatgtcatcaatcacgaagtgttgttggtctgtctggagataacaatattgttcatgatagctccagttgctcgcagcatcaatgctctgtttgtgatggaagtttttttccatctctccttaaggagatgtctgaagtggttggcagcttcaataaacgtgcgcagaaattgcttgaactgcatctctcatcaggtttccgcaaatatcttatcttgctcaaagaaaaaattcaaggaaaccatattgctttagttcaagaaggaaaagatctagtcacctatgctataatcaacgcaattgccgtgcgtaaaatacttaagaaatatgacaagattcactattctaagcaaggccaggcattcaagtcacaagctcaaagtatgcacattgagatccttcagtccccctggctgtgtgaacttatgggctttcacatcaatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="3277" stop="878"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2985" g_stop="2538" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="449" r_length="449" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2537" i_stop="1613" i_length="925">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.511" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1612" g_stop="1368" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="694" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1367" i_stop="1289" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1288" g_stop="1178" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="695" r_stop="805" r_length="111" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-U329295" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>804</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U329295" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2985" e_stop="2538"/>
          <exon e_start="1612" e_stop="1368"/>
          <exon e_start="1288" e_stop="1178"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTGAA-T-TTCTCTGATTTTTTTTTTTCAAATTAATTAATTTGTGATCATCACAATTGTCATGTGTAAGTGATTCCGCCATTAAAGGATACAGATATAGTCAGTGTTTCCGCCATTAAAGTAGATAAACAGTGAGGAAAAACAAACGGAGATTTTTCAGTATTTTTTTTTTCACTATTAAGTGCTCGCAGTTTGTTTGTTTGTTTTTTGGGAAAATTCTCAGATTTGGAACAATTTTTTGAATTTTGGAAATGAAGTTTTGTAAGAAATATGAGGAGTATATGGAAGGGCAATGCCGGAATAAGAAGTTGCCGCGGGTAGGTTTGAAGAAATTGAAGAAAATTTTGAAGAGATGTCGAAAATGTCATCAATCACGAAGTGTTGTTGGTCTGTCTGGAGATAACAATATTGTTCATGATAGCTCCAGTTGCTCGCAGCATCAATGCTCTGGTTTGTTTGATCTGTTGAATTATACTGTGATTGATTAAATTTATGTTGAATTATACTGTGATTGATTAAATTTATGTTGAATTATACTGTGATTGATTAAATTGATGTAAACCTGTGCTTGATTTTGGATGATTTTGTATAGAGTAGTTGAATTTTGTTAAGAATCACGAGTTTTTAGGTCTAAATCACAGTAGAGTAGCTGATTTCGCCATAGTTTTAATGGACAGAGTTATCTAGTATATCTAGTGGGAGGTGGCAACTATCGTGTGAATTAGTCTGGCAAAGTGGTTAAATTTGGTTAAGAATTATTAGGTATCGTGTTCAAATTTAAGCATAGACGAAAACATAGAGTTAATTGCTATTTGTGGTGGGTGAGGTGGAAGGTATTCTATGGAATTAGTGGAAAAAAGAAAAAAGAATAGCTTGAATTTGGTGTAAAAAGAAAAAAGTAAATTAGTTTGCCCCTTTTTGAGTTTTTTGACAATTCATGCACTAAGACAACTTTAATACTGGTAAGTGCATAAATTTTTTGTTTGCTTGTACATGTTTATCTGTTGAGATAAAATTGATTCATTTCTGATGACTACGTTTGTTGTTTTAGTTTTATCTATTGTTGCTTATTCAAATGATTTTGTATAGGGTAGCTTAAAGTTGGCAATCCAGAAAAAGGGGTAAATGAATTTGCTACCTTTTGTGTTTTTTATAATAGTTGCACTAGAACGATACTCGGATTAACTTCATACAGGGTAGCTTGATTTTGGTGAAAAAGAAGCAAAGATATTCCCAAGCTTCTGAAGTTTTTTTACAATTTATGCACCAGAACAATGTTAAAGCTTGTAAAATCTGAAACTGTCTTTATATTTGTTAATATATTTCATATCAGTCATCACTTAAAGCTTCTAATAAATTTTCCTGCCTTATGTAGTTTGTGATGGAAGTTTTTTTCCATCTCTCCTTAAGGAGATGTCTGAAGTGGTTGGCAGCTTCAATAAACGTGCGCAGAAATTGCTTGAACTGCATCTCTCATCAGGTTTCCGCAAATATCTTATCTTGCTCAAAGAAAAAATTCAAGGAAACCATATTGCTTTAGTTCAAGAAGGAAAAGATCTAGTCACCTATGCTATAATCAACGCAATTGCCGTGCGTAAAATACTTAAGAAATATGACAAGGTATTTCCCTTTTGGATTATTAATTCAACATATTAACTTAGTTTTGCTTCATTTATTAACTACTCCTGTCTATCTGTAGATTCACTATTCTAAGCAAGGCCAGGCATTCAAGTCACAAGCTCAAAGTATGCACATTGAGATCCTTCAGTCCCCCTGGCTGTGTGAACTTATGGCTTTTCACATCAATTTG</genome_strand>
        <mrna_strand>AGAGAACTAGTCTCTGATTTTTTTT-TTCAAATTAATTAATTTGTGATCATCACAATTGTCATGTGTAAGTGATTCCGCCATTAAAGGATACAGATATAGTCAGTGTTTCCGCCATTAAAGTAGATAAACAGTGAGGAAAAACAAACGGAGATTTTTCAGTATTTTTTTTTTCACTATTAAGTGCTCGCAGTTTGTTTGTTTGTTTTTTGGGAAAATTCTCAGATTTGGAACAATTTTTTGAATTTTGGAAATGAAGTTTTGTAAGAAATATGAGGAGTATATGGAAGGGCAATGCCGGAATAAGAAGTTGCCGCGGGTAGGTTTGAAGAAATTGAAGAAAATTTTGAAGAGATGTCGAAAATGTCATCAATCACGAAGTGTTGTTGGTCTGTCTGGAGATAACAATATTGTTCATGATAGCTCCAGTTGCTCGCAGCATCAATGCTCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGATGGAAGTTTTTTTCCATCTCTCCTTAAGGAGATGTCTGAAGTGGTTGGCAGCTTCAATAAACGTGCGCAGAAATTGCTTGAACTGCATCTCTCATCAGGTTTCCGCAAATATCTTATCTTGCTCAAAGAAAAAATTCAAGGAAACCATATTGCTTTAGTTCAAGAAGGAAAAGATCTAGTCACCTATGCTATAATCAACGCAATTGCCGTGCGTAAAATACTTAAGAAATATGACAAG...............................................................................ATTCACTATTCTAAGCAAGGCCAGGCATTCAAGTCACAAGCTCAAAGTATGCACATTGAGATCCTTCAGTCCCCCTGGCTGTGTGAACTTATGGGCTTTCACATCAATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U346798" ref_strand="+" ref_description="SGN-U346798        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT4G23160.1 | Symbol: None | protein kinase family protein, contains Pfam domain PF00069: Protein kinase domain | chr4:12129496-12134198 FORWARD | Aliases: F21P8.50, F21P8_50 (evalue: 1e-36, score=149) genbank/nr: gi|37530894|ref|NP_919749.1| putative gag-pol polyprotein [Oryza sativa (japonica cultivar-group)] gi|18642681|gb|AAK02020.2| Putative gag-pol polyprotein [Oryza sativa] gi|31430072|gb|AAP52036.1| putative gag-pol polyprotein [Oryza sativa (japonica cultivar-group)](evalue: 3e-43, score=178)">
      <seq>tcatccacaatacacacgcaaccaccacccacacgcacaagcaacccgaaccaccccatacccacaacatctccaacccgatccgttttgggtccttaccggccacccccgaatcaccaccgcccgtgccaccccccaatactcatcccatgttaacccgtggcaaagccggtatctttaaacccaaaacctttcaggctaccatactaccaaatacaccccttcccgatagtgaaccaacaacctactctgttgcctcaaaaaatgcttattggcgtcatgctatggatgacgagtttaaggctttgactgatcaggaaacttgggttcttgtacctaagccccatgggcggcacccagtgggctgtaaatgggtgtacaaaattaaacacaatgcggatggcagtatttccaggtacaaggctcgtttggttgctaaaggctacaatcaggagtatggtcttgattactccgagacattcagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="+" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="39445" stop="40529"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39745" g_stop="40229" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="486" r_length="486" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="+" ref_id="SGN-U346798" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U346798" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39745" e_stop="40229"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACCCACAATACACCCGCAACCACCACCCACACTAACAACCAACCCGAACCACCCCCATACCCACAACATCTCCAGCCCGATCCGTTTTGGGTCCTTCCCGGCCA--CCCGAATAACCACCGCCCGTGCCACCCCCCAATACTCATCCCATGTTAACCCGTGTCAAAGCCGGTATCTTTAAATCCAAAACCTTTCAGGCTACCATACTACCAAATACACCCCTTCCCGATAGTGAACCAACAACCTACTCTGTTGCCTCAAAAAATGCTTATTGGCGTCATGCTATGGATGACGAGTTTAAGGCTTTTACTGATTAGAAAACTTGGGTTCTTGTACCTAAGCCCCATGGGCGGCACCCAGTGGGCTGTAAATGGGTCTACAAAATTAAACACAATGCAAATGGCAGTATTTCCAGGTACAAGGCTCGTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGGCTTGATTACTCTGAGACATTCAGTC</genome_strand>
        <mrna_strand>TCATCCACAATACACACGCAACCACCACCCACACGCACAAGCAACCCGAACCA-CCCCATACCCACAACATCTCCAACCCGATCCGTTTTGGGTCCTTACCGGCCACCCCCGAATCACCACCGCCCGTGCCACCCCCCAATACTCATCCCATGTTAACCCGTGGCAAAGCCGGTATCTTTAAACCCAAAACCTTTCAGGCTACCATACTACCAAATACACCCCTTCCCGATAGTGAACCAACAACCTACTCTGTTGCCTCAAAAAATGCTTATTGGCGTCATGCTATGGATGACGAGTTTAAGGCTTTGACTGATCAGGAAACTTGGGTTCTTGTACCTAAGCCCCATGGGCGGCACCCAGTGGGCTGTAAATGGGTGTACAAAATTAAACACAATGCGGATGGCAGTATTTCCAGGTACAAGGCTCGTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGTCTTGATTACTCCGAGACATTCAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U344877" ref_strand="+" ref_description="SGN-U344877        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT4G23160.1 | Symbol: None | protein kinase family protein, contains Pfam domain PF00069: Protein kinase domain | chr4:12129496-12134198 FORWARD | Aliases: F21P8.50, F21P8_50 (evalue: 2e-36, score=149) genbank/nr: retrotransposon(evalue: 5e-50, score=201)">
      <seq>gtttggttgctaaaggctacaatcaggagtatgggcttgattactccgagacattcagtcctgttattcggcaggaaaccattcgcctggtactgtcactcgccgtgcgcaacaattggctcatcaatcagttggatgtttccaatgcttttcttcatggcatgcttgatgaaacaatctacatgacgcaaccaccgggctatgttgatcctcgcttccctcaacatgtttgcaaactccagaagtctctgtatgggctcaagcaagccccccgtgcttggtacgcacgtctgaaaacgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="+" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="39870" stop="40770"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40170" g_stop="40470" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="+" ref_id="SGN-U344877" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>301</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U344877" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40170" e_stop="40470"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGGCTTGATTACTCTGAGACATTCAGTCCTGTTATTCGGCAGGAAACCATTCGCCTGGTACTGTCACTCGTTGTGCGCAACAATTGGCTCATCAATCAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGCTTGATGAAACTATCTACATGACGCAACCACCGGGCTATGTTGATCCCCGCTTCCCTAAACATGTTTGTAAACTCCAGAAGTCTCTGTATGGGCTCAAGCAAGCCCCCCGTGCTTGGTACACACGTCTTAAAATGTT</genome_strand>
        <mrna_strand>GTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGGCTTGATTACTCCGAGACATTCAGTCCTGTTATTCGGCAGGAAACCATTCGCCTGGTACTGTCACTCGCCGTGCGCAACAATTGGCTCATCAATCAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGCTTGATGAAACAATCTACATGACGCAACCACCGGGCTATGTTGATCCTCGCTTCCCTCAACATGTTTGCAAACTCCAGAAGTCTCTGTATGGGCTCAAGCAAGCCCCCCGTGCTTGGTACGCACGTCTGAAAACGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U328531" ref_strand="+" ref_description="SGN-U328531        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: YCF10 | hypothetical protein | chrC:60741-61430 FORWARD | Aliases: YCF10(evalue: 7e-10, score=60.8) genbank/nr: potential(evalue: 2e-18, score=83.6)">
      <seq>gatttgaatccataaagaaatgatccaattaatcccgatacaaaatgagaatcgtatggatgcgattttgcacttctcaacaaatataatctagtttggtgttctaagcgggtattcaattttgggtaaggaaaaacttgtcattcttacttaactcttggtttaggaattccttatataacttaaatgacacagcaaaagcgataaaatacaacctcaaaatcacacatagactactcgtaaataataattttaagaaacatagtagaacatgaattgttgtatattgctattttcttcatgtaggaggacacaatattccaataaaataatgaaatcgtaagaaagtacatcaacatatttaaaaaggaaatatataatacttaggaaggaaagaaagaagcggataaaaagaaaaagaaaattactgcacatacaaaatgatcagcaaagttcattcatttttgcatgataatctctcatcgagtcttgtcatttccatgaagatcatgctaggcaatttatagaaatagcaatttatagaaatgctaggcaattaataatgattttagtccatatcaaatttgtataatgaaaaaacttttcaaatacttatacaatagagtaattaattaataaagtaaacttgattcatgcaccaatctaaatgagttatttattaaatatttaattatattttataatatttggttaatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="+" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="44887" stop="46204"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45187" g_stop="45904" g_length="718"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="718" r_length="718" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="+" ref_id="SGN-U328531" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U328531" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45187" e_stop="45904"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTGAATCCATAAAGAAATGATCCAATTAATCCCGATACAAAATGAGAATCGTATGGATGCGATTTTGCATTTCTCGACAAATAAAATGTAGTTTGGTGTTTTAAGCGGGTAATCAATTTTGGGTAAGGAAAAACGTGTCATTCTTACTTAACTCTTGGTTTAGGAATTCCTTATATAACTTAAATGACACAGCAAAAGCGATAAAATACAACCTCAAAATCACACATAGACTACTCGTAAATAATAATTTTAAGAAACATAGTAGAACATGAATTGTTGTATATTGCTATTTTCTTCATGTAGGAGGACACAATATTCCAATAAAATAATGAAATCGTAAGAAAGTACATCAACATATTTAAAAAGGAAATATATAATACTTAGGAAGGAAAGAAAGAAGCGGATAAAAAGAAAAAGAAAATTACTGCACATACAAAATGATCAGCAAAGTTCATTCATTTTTGCATGATAATCTCTCATCGAGTCTTGTCATTTCCATGAAGATCATGCTAGGCAATTTATAGAAATAGCAATTTATAGAAATGCTAGGCAATTAATAATGATTTTAGTCCATATCAAATTTGTATAATGAAAAAACTTTTCAAATACTTATACAATAGAGTAATTAATTAATAAAGTAAACTTGATTCATGCACCAATCTAAATGAGTTATTTATTAAATATTTAATTATATTTTATAATATTTGTTTAATTA</genome_strand>
        <mrna_strand>GATTTGAATCCATAAAGAAATGATCCAATTAATCCCGATACAAAATGAGAATCGTATGGATGCGATTTTGCACTTCTCAACAAATATAATCTAGTTTGGTGTTCTAAGCGGGTATTCAATTTTGGGTAAGGAAAAACTTGTCATTCTTACTTAACTCTTGGTTTAGGAATTCCTTATATAACTTAAATGACACAGCAAAAGCGATAAAATACAACCTCAAAATCACACATAGACTACTCGTAAATAATAATTTTAAGAAACATAGTAGAACATGAATTGTTGTATATTGCTATTTTCTTCATGTAGGAGGACACAATATTCCAATAAAATAATGAAATCGTAAGAAAGTACATCAACATATTTAAAAAGGAAATATATAATACTTAGGAAGGAAAGAAAGAAGCGGATAAAAAGAAAAAGAAAATTACTGCACATACAAAATGATCAGCAAAGTTCATTCATTTTTGCATGATAATCTCTCATCGAGTCTTGTCATTTCCATGAAGATCATGCTAGGCAATTTATAGAAATAGCAATTTATAGAAATGCTAGGCAATTAATAATGATTTTAGTCCATATCAAATTTGTATAATGAAAAAACTTTTCAAATACTTATACAATAGAGTAATTAATTAATAAAGTAAACTTGATTCATGCACCAATCTAAATGAGTTATTTATTAAATATTTAATTATATTTTATAATATTTGGTTAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U322856" ref_strand="+" ref_description="SGN-U322856        Tomato 200607 #1 [7 ESTs aligned] arabidopsis/peptide: AT1G02850.2 | Symbol: None | similar to glycosyl hydrolase family 1 protein [Arabidopsis thaliana] (TAIR:At4g22100.1); similar to glycosyl hydrolase family 1 protein [Arabidopsis thaliana] (TAIR:At4g27830.1); similar to glycosyl hydrolase family 1 protein [Arabidopsis thaliana] (TAIR:At4g27820.1); similar to glycosyl hydrolase family 1 protein [Arabidopsis thaliana] (TAIR:At1g60090.1); similar to putative beta-glucosidase [Oryza sativa (japonica cultivar-group)] (GB:AAV31358.1); contains InterPro domain Glycoside hydrolase, family 1 (InterPro:IPR001360) | chr1:630512-633259 FORWARD | Aliases: None (evalue: 7e-172, score=600) genbank/nr: Glycoside(evalue: 1e-173, score=613)">
      <seq>caaattacaaaaatgccgccggcgaagcagctccgggatctgttcacggcgatactgcttgtttttattattgcggcggcggcgaacttgccggttatggtactttccggcgccggtgatgtccgcagatcggattttcctgatactttcgttttcggtgccggttcttctgcttatcaagttgaaggggcagcatttgaagatggaaggatgcctagcatttgggacacctttgctcatgctggtatttatggaggagccaacgcggatgtatcttgtgacgcataccataaatacaaggaagatgtaaaactcatggctgatatgggtttggaagggtacagattttctatttcgtggtcgagacttattccaaatggaagaggttcgattaatcctaaagggttacagtattacaacaatctcatcaatgagctcctccgtcatggaattcaaccacatattacgttatgtcacagtgatataccacaaacgcttcaagatgaatatggtggatggatgagtcgaaagataatcgatgatttcactgcttatgcggatgtgtgcttcaaggaattcggtgacagagtttcatattggactacattaaatgaagtcaatgtgttcactataggtggttatgataatgggatcacacccccaaatcattgttccccacctttcggagctaaaccctgttccgtaggtaactcttcaaccgagccatacatagtagctcataatatactacttgctcattcagccgcggtgagactataccggagaaaatacaagtcaactcaacatggttttgtgggattgaatctctttgcatatcgaccactcccttgtacaaatgtaacagctgatataaatgcagtacaacgagtttatgatttctacgtaggctggtttgccaatcccttaatatttggcgattatcctgatgtaatgaagaggaatgttgggtctagattgcccgaattcacacacgaagagtctatgcaagttaaaggcgctatagacttcttagcactgaatcattatcaaacaatacatgtcaaagatagctccagcagccttgagagtaaaatcagggactacaccattgatggagcattcgaactaatatacaccgaagaagattctccaccagatcagtttgagtatccagtgacacaaccagggctaggaggaatattagagtatctcaagcaagcttatggcgatattccaatatatattcacgaaaatggtcaaatgacaagacgaaatggtacgttaaatgatacaagaagggtggaatatctgcaagcttacattgggaatgtgcttgaagctatgaggaatggatcaaacgtgaaaggctatttcgtgtggtcattcttagactgttttgagttactggatgcatatggttcaggatttggcttatactatgtggatttggatgacaaagagttaacaagatatccaaagctttcttcacattggtacactaatttcttgaaggggaaagactccaaacatagtgaaattcatcagattgaagataaagtacttcattcttcacaataagtatttgtggtttcatttgtatcctcacaataatgatgtattatttcctaagttggggtggactcttcactttcgatgctgcattcgtgtcgaatttagaacatccgtgtcgaattctttaaaatgcactacttttggagaatccgacatgcgtccgctaatatttttgaaaagtcatagcaacaaattattttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="56464" stop="50774"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56164" g_stop="55985" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55984" i_stop="54403" i_length="1582">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.733" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54402" g_stop="54339" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="244" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54338" i_stop="53906" i_length="433">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53905" g_stop="53850" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="300" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53849" i_stop="53782" i_length="68">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53781" g_stop="53706" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="376" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53705" i_stop="53608" i_length="98">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53607" g_stop="53536" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="448" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="53535" i_stop="53426" i_length="110">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="53425" g_stop="53338" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="536" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="53337" i_stop="53235" i_length="103">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="53234" g_stop="52976" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="795" r_length="259" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="52975" i_stop="52900" i_length="76">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.774" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="52899" g_stop="52784" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="796" r_stop="911" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="52783" i_stop="52686" i_length="98">
            <donor d_prob="0.802" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="52685" g_stop="52465" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="912" r_stop="1132" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="52464" i_stop="52251" i_length="214">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="52250" g_stop="52222" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1133" r_stop="1161" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="52221" i_stop="52132" i_length="90">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="52131" g_stop="52038" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1162" r_stop="1255" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="52037" i_stop="51922" i_length="116">
            <donor d_prob="0.314" d_score="1.00"/>
            <acceptor a_prob="0.762" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="51921" g_stop="51831" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1256" r_stop="1346" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="51830" i_stop="51486" i_length="345">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="51485" g_stop="51148" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="1347" r_stop="1682" r_length="336" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1773" polyA_stop="1786"/>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-U322856" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>1684</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U322856" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56164" e_stop="55985"/>
          <exon e_start="54402" e_stop="54339"/>
          <exon e_start="53905" e_stop="53850"/>
          <exon e_start="53781" e_stop="53706"/>
          <exon e_start="53607" e_stop="53536"/>
          <exon e_start="53425" e_stop="53338"/>
          <exon e_start="53234" e_stop="52976"/>
          <exon e_start="52899" e_stop="52784"/>
          <exon e_start="52685" e_stop="52465"/>
          <exon e_start="52250" e_stop="52222"/>
          <exon e_start="52131" e_stop="52038"/>
          <exon e_start="51921" e_stop="51831"/>
          <exon e_start="51485" e_stop="51148"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATTACAAAAATGCCGCCGGCGAAGCAGCTCCGGGATCTGTTCACGGCGATACTGCTTGTTTTTATTATTGCGGCGGCGGCGAACTTGCCGGTTATGGTACTTTCCGGCGCCGGTGATGTCCGCAGATCGGATTTTCCTGATACTTTCGTTTTCGGTGCCGGTTCTTCTGCTTATCAAGTTAGTTTTTTTTAACCATCAATTATTATGTGATTGTTTTAAGTTAGATTTTTAGTATGCATTCAATTAAATCCAACATTTTTTTCACAGAATATTGGTATATGTATGCAAAAACTATACCTTTTTAGTCTGTCTTTTTAGTTAGTCTAAAATAGAATAAAATAAATATCTTCGATAAAAATATCTATCATTTATTTTAGATTAGAAATTTTAATAATCTTCCTTTTTTTTTAAAAAAAATTTCCCGTGAAGTTTAAGTAACTCATATTTATGAGAGAGAGGGAGTATAAGTTAGTCTAACATGAGATGAAATTTTAGAAAGAAAAAAATATTTTCGAAATTTGTAATCTAAATTAAGTTATAGATATTTGTGTAGTTAAAAATTATTTTATTAAAAATAAAATATTTCAAGTCAAATAAATTACGGAAATTAAAATAGAGAAAGTATTACGTTTTGAATCAAAGAAAGACTCATCTAGAATTTCTTGAACATATGTTTTAGTTGGGAATTGATTCCTTTTCCTCTAGGTAAATACTCTTCCTCTCGTTCCACATTAATTTAATTTTTGACATGTTTCACGCCTTTAAGAAAAGTAGACATAAATTGAATTTATTTTTTCATTTTTACCTTTATTAATTATCGTCAAATTTATGATTGAAATTCAACATTAACTAATGAAGCGTAAAATTGAAAGAACACTCTTCAAGTAGTCATGAAAACTGAACAATTAAACTATTTTGAAAAATGAAAAATGCCTCAAAAATTAAATTAATATTGAATATTTAACCTATTGTAATAATTAGAGGTTTTTGGAGTATGAGTGGTAACAAATACTCCCTGTGTCCGATATTGTTTGTCATGTTGCGCTTTTCGAAAGTCAATTAGATTAATTGTCAAAATTAAATTAAATCACATTAATTTGATATTTTATACAAAAAATTAGATATTCTAAAACTAAATGAAAAGTACTGTAAATTGCAACTTTTTGCATATTAATATGATGAAAAAAATACATTTTAAAATGTTAGTCAAAGTTTTTATAATTTAATTTTAAAAATAGAAATCATGACAAACAATACCGAACGGTGATAATAATATTATATTAAATGTAGATAATAATTAAGTACATGAAATCCCTAGTTACGCGGGGAGACTGTTAAAGAATGACAAAAGTCCACATCGGTGGTTAATGAGATGAGTGGACTCCTTATAAGGGTTGGACAAGACCATACGTTATCGTGCATCATAATATACACAATAAATACGCCACTGAGATAACTAGAAAATATATCTGTGCATGAGTTTCAATGTATAGAATATAGTGTTGATTACTGATTAGCAAATATCTATAAAATAGATGCTAATCTATGTGCAATGGTGGAGCTAAGATTTTTATGTAAAAAAATATAAAGAGGTACTTGGCACATGAAGAAAGCGGATGATTCAAAATCTACTTTATATATATAAACGATAATTTTAACTTTATATGTATTCAGTGTAAATTCTTAACAAAGATGATTCATCTTAACCCCATATGGTATCCTGGCTCCAACTCTGACTACGTGGTACGTTTATCGAAAGGTTGAAGGGGCAGCATTTGAAGATGGAAGGATGCCTAGCATTTGGGACACCTTTGCTCATGCTGGTTTGTCTCTTTAATCCTTGTGATTTGCTTCACTAATCTCGGAACACTGCACCAAAAATAATTTTTAGCGGCAATTAATTAACGATAATAGCTTAATTGCGTGTTCTTAGTGACAATTAACATTCTTTGTAAATGTCCATAAATGTCCCAAAGCCTATAGTGACATTAGTACTCTTTCTTTGTTAATGTGCATATTTGTTGCCTCTAAAAACTGTTTTTGTCGTAGTGGAATATGAAGATATGGTTTCTTTACCTTGCATATTATGGTTGTTTCACAGGCTAAATTAATAGATTTGTAATCACATTCTACTTTTCTAAACCATGTACTAGTAATTTCCAAGGATTATTTGGTACGGGATGGGGCAAATGATTTTGCCCCGTCCCTACTGCAGCAGAAAATGACACTAGATTGTACCAACACTAAAATTTTCAGGTATTTATGGAGGAGCCAACGCGGATGTATCTTGTGACGCATACCATAAATACAAGGTCCGAAAGATAGTTCAACTTTGAGTTCATGTAATTGATTATCAGTTAGACTGCTTGTTTATTTGCAGGAAGATGTAAAACTCATGGCTGATATGGGTTTGGAAGGGTACAGATTTTCTATTTCGTGGTCGAGACTTATTCCAAGTAGGCTACATTATCCAACTACTTCGTATAATCGTATCTATAAGGTTGTTATAAGGTTTATATTTCGTTTCATTCCTTGTTTTTGTTTAATCATGTAGATGGAAGAGGTTCGATTAATCCTAAAGGGTTACAGTATTACAACAATCTCATCAATGAGCTCCTCCGTCATGGTTTTAAACAGATCCCCTTATGTGCTAGTTCTTACTTTTTCAATTTCAAGTTTAAATTTCTGCGTGATAGTAATAGATGATATATCACTTGTTTTGATTATGTTTTGTAGGAATTCAACCACATATTACGTTATGTCACAGTGATATACCACAAACGCTTCAAGATGAATATGGTGGATGGATGAGTCGAAAGATAATGTGTGATGAAGATCGAGTACTTCTAATTTTACTTCATAATTTGGCTACTGTATTCTTTTACATCTAACTGAATGCGTAAAAACTGTTTGTGTCTCCCTTTTAGCGATGATTTCACTGCTTATGCGGATGTGTGCTTCAAGGAATTCGGTGACAGAGTTTCATATTGGACTACATTAAATGAAGTCAATGTGTTCACTATAGGTGGTTATGATAATGGGATCACACCCCCAAATCATTGTTCCCCACCTTTCGGAGCTAAACCCTGTTCCGTAGGTAACTCTTCAACCGAGCCATACATAGTAGCTCATAATATACTACTTGCTCATTCAGCCGCGGTGAGACTATACCGGAGAAAATACAAGGTAGCACCTTTTGAACTAAACTACTATTATACTAAAGCCCCAAAATTTTGCTGATGGTGTGCCTGTGTCGCTGCAGTCAACTCAACATGGTTTTGTGGGATTGAATCTCTTTGCATATCGACCACTCCCTTGTACAAATGTAACAGCTGATATAAATGCAGTACAACGAGTTTATGATTTCTACGTAGGCTGGTAAAAAATGCAGAAGTTTGTTTCTTGGTCTATTAACATATCTATCGTACCAAGCTGATCTTGTGGAATGTTGTCATAATTCATATTTTTCAATGCAGGTTTGCCAATCCCTTAATATTTGGCGATTATCCTGATGTAATGAAGAGGAATGTTGGGTCTAGATTGCCCGAATTCACACACGAAGAGTCTATGCAAGTTAAAGGCGCTATAGACTTCTTAGCACTGAATCATTATCAAACAATACATGTCAAAGATAGCTCCAGCAGCCTTGAGAGTAAAATCAGGGACTACACCATTGATGGAGCATTCGAACTAATATGTAAGAATAACGACTTACTCTTAACTTGATCTGTTTGATTTACATTTAAAGATAATAGTCATCTTAAGCTTGGTAATCAAGGTAATCAGTTTACTAATATGTAATATGTAAGGTAATCAGTTTCGTTCTCCTTTATATATTAGCCTGACATGATGAAATTCACTACATCAACGTCTTCCCTGTGTTTTTTTTGTAACATTATGAACTTGTGCAGACACCGAAGAAGATTCTCCACCAGATCAGGTGAGTCTCGCGAACATACATGAATACATGATGACTTTGCCTTGTTTATAAGTTTTTTTTTCAAAAAATTTCATTTGACAATTTGTTCAGTTTGAGTATCCAGTGACACAACCAGGGCTAGGAGGAATATTAGAGTATCTCAAGCAAGCTTATGGCGATATTCCAATATATATTCACGAAAATGGTTCCTCTTCTCTCTCTCTCTCTCTCATGCTCCGGATTTCTGAGCCTTTTGAAAGTTGGTTTAGAGGCTTTTTTTGTAAAAAAGTCTGAGAAAGCTCGATCCAATCTATTTTCCAGGTCAAATGACAAGACGAAATGGTACGTTAAATGATACAAGAAGGGTGGAATATCTGCAAGCTTACATTGGGAATGTGCTTGAAGCTATGAGGTAAGCTCTTCTTTCACAGAGCGGTTTTTTAAAACACGTAGATCAAGCATTTAAGCATGTCATCGTTTCAATCTAGTGATCTTAAACGATCACAACTGTGTAGTCTCCACATGCTCAACAAACCATCTTAGACTTTTAAGTCCAATACTGGCCGAGTCAGAATTTTCACTAAAGGATTCAAAATACAGAGAAGTAAAACTCATGAAGAAGCTAAGAGGATTCAACATCTACTATACATCAATATATGTTTCTGGCACCCCGTGTGCCCTCTTGCTCTGCCTATGCCTGTAACCACGAAGCAATTATGTTTAGACGATATTCATGATGTTATGTTTCTGTTTTTAGGAATGGATCAAACGTGAAAGGCTATTTCGTGTGGTCATTCTTAGACTGTTTTGAGTTACTGGATGCATATGGTTCAGGATTTGGCTTATACTATGTGGATTTGGATGACAAAGAGTTAACAAGATATCCAAAGCTTTCTTCACATTGGTACACTAATTTCTTGAAGGGGAAAGACTCCAAACATAGTGAAATTCATCAGATTGAAGATAAAGTACTTCATTCTTCACAATAGGTATTTTGTGGTTTCATTTGTATCTTCACAATAATGATGTATTATTTCCTAAGTTGGGGTGGACTTTTCACTTTCAATGCTGCATTCGTGTCGAATTCTATAAAAT</genome_strand>
        <mrna_strand>CAAATTACAAAAATGCCGCCGGCGAAGCAGCTCCGGGATCTGTTCACGGCGATACTGCTTGTTTTTATTATTGCGGCGGCGGCGAACTTGCCGGTTATGGTACTTTCCGGCGCCGGTGATGTCCGCAGATCGGATTTTCCTGATACTTTCGTTTTCGGTGCCGGTTCTTCTGCTTATCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAGGGGCAGCATTTGAAGATGGAAGGATGCCTAGCATTTGGGACACCTTTGCTCATGCTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTATGGAGGAGCCAACGCGGATGTATCTTGTGACGCATACCATAAATACAAG....................................................................GAAGATGTAAAACTCATGGCTGATATGGGTTTGGAAGGGTACAGATTTTCTATTTCGTGGTCGAGACTTATTCCAA..................................................................................................ATGGAAGAGGTTCGATTAATCCTAAAGGGTTACAGTATTACAACAATCTCATCAATGAGCTCCTCCGTCATG..............................................................................................................GAATTCAACCACATATTACGTTATGTCACAGTGATATACCACAAACGCTTCAAGATGAATATGGTGGATGGATGAGTCGAAAGATAAT.......................................................................................................CGATGATTTCACTGCTTATGCGGATGTGTGCTTCAAGGAATTCGGTGACAGAGTTTCATATTGGACTACATTAAATGAAGTCAATGTGTTCACTATAGGTGGTTATGATAATGGGATCACACCCCCAAATCATTGTTCCCCACCTTTCGGAGCTAAACCCTGTTCCGTAGGTAACTCTTCAACCGAGCCATACATAGTAGCTCATAATATACTACTTGCTCATTCAGCCGCGGTGAGACTATACCGGAGAAAATACAAG............................................................................TCAACTCAACATGGTTTTGTGGGATTGAATCTCTTTGCATATCGACCACTCCCTTGTACAAATGTAACAGCTGATATAAATGCAGTACAACGAGTTTATGATTTCTACGTAGGCTG..................................................................................................GTTTGCCAATCCCTTAATATTTGGCGATTATCCTGATGTAATGAAGAGGAATGTTGGGTCTAGATTGCCCGAATTCACACACGAAGAGTCTATGCAAGTTAAAGGCGCTATAGACTTCTTAGCACTGAATCATTATCAAACAATACATGTCAAAGATAGCTCCAGCAGCCTTGAGAGTAAAATCAGGGACTACACCATTGATGGAGCATTCGAACTAATAT......................................................................................................................................................................................................................ACACCGAAGAAGATTCTCCACCAGATCAG..........................................................................................TTTGAGTATCCAGTGACACAACCAGGGCTAGGAGGAATATTAGAGTATCTCAAGCAAGCTTATGGCGATATTCCAATATATATTCACGAAAATG....................................................................................................................GTCAAATGACAAGACGAAATGGTACGTTAAATGATACAAGAAGGGTGGAATATCTGCAAGCTTACATTGGGAATGTGCTTGAAGCTATGAG.........................................................................................................................................................................................................................................................................................................................................................GAATGGATCAAACGTGAAAGGCTATTTCGTGTGGTCATTCTTAGACTGTTTTGAGTTACTGGATGCATATGGTTCAGGATTTGGCTTATACTATGTGGATTTGGATGACAAAGAGTTAACAAGATATCCAAAGCTTTCTTCACATTGGTACACTAATTTCTTGAAGGGGAAAGACTCCAAACATAGTGAAATTCATCAGATTGAAGATAAAGTACTTCATTCTTCACAATAAGTA-TTTGTGGTTTCATTTGTATCCTCACAATAATGATGTATTATTTCCTAAGTTGGGGTGGACTCTTCACTTTCGATGCTGCATTCGTGTCGAATT-TAGAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U325446" ref_strand="+" ref_description="SGN-U325446        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: | Symbol: None | F-box family protein, to circadian clock coupling factor ZGT (GP:14210079) {Nicotiana tabacum}; contains Pfam PF00646: F-box domain | chr4:1072481-1073779 FORWARD | Aliases: T14P8.22, T14P8_22(evalue: 5e-38, score=154) genbank/nr: gi|15235367|ref|NP_192153.1| F-box protein family [Arabidopsis thaliana] gi|7487012|pir||T01306 hypothetical protein T14P8.22 - Arabidopsis thaliana gi|3193286|gb|AAC19270.1| T14P8.22 gene product [Arabidopsis thaliana] gi|7269004|emb|CAB80737.1| putative protein [Arabidopsis thaliana] gi|25083158|gb|AAN72049.1| putative protein [Arabidopsis thaliana] gi|30984562|gb|AAP42744.1| At4g02440 [Arabidopsis thaliana](evalue: 4e-36, score=154)">
      <seq>gaccaggcactgaaaatcatcttcacacattccacaaacctacaaaaaggcttttctacctcttttgcccacaaaaatcactaaccaaattctcattcttgaatttgttacaacttacaagtgtttttgctgataaatttggtgtttaattccattggattgagcaaggggtttgattctattcatctttttttagatgtcgaattcatgtatggttgatggatttttctcaaaactatcagaggatttgattctcaatatatttttcaagctagaagatgatccaaggaactgggctcgtttatcttgtgtttcaacgaaatttgcatttctgattcatactatttgttacaaatcgaaatgctctgcaactattccttcggttgtttccgatctagtaagttcgacgtcttcgtgtcctccaggtgggtggtcttcactttacaagctagctgtatgctgtccgggtcttcatcaagctggtgttcttctggagaattctgattttgggcttgaacgtgaaattggtccggatgagagttattcgggtcgggttttccctaaagctgagctgattccttcttcatcgagtaataataataatcggtgtgattctggtgaagttgttgattgtggttggtctttgtttgatgatcttatgtttgatactgtttatgatgcttctgaatcgagttcaaatcacattgaggtcgtcgaggaggaacccacaagctttgtggtgaatcccacaaggcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="61545" stop="60193"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61246" g_stop="60494" g_length="753"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="753" r_length="753" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-U325446" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>753</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U325446" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61246" e_stop="60494"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCAGGCACTGAAAATCATCTTCACACATTCCACAAACCTACAAAAAGGCTTTTCTACCTCTTTTGCCCACAAAAATCACTAACCAAATTCTCATTCTTGAATTTGTTACAACTTACAAGTGTTTTTGCTGATAAATTTGGTGTTTAATTCCATTGGATTGAGCAAGGGGTTTGATTCTATTCATCTTTTTTTAGATGTCGAATTCATGTATGGTTGATGGATTTTTCTCAAAACTATCAGAGGATTTGATTCTCAATATATTTTTCAAGCTAGAAGATGATCCAAGGAACTGGGCTCGTTTATCTTGTGTTTCAACGAAATTTGCATTTCTGATTCATACTATTTGTTACAAATCGAAATGCTCTGCAACTATTCCTTCGGTTGTTTCCGATCTAGTAAGTTCGACGTCTTCGTGTCCTCCAGGTGGGTGGTCTTCACTTTACAAGCTAGCTGTATGCTGTCCGGGTCTTCATCAAGCTGGTGTTCTTCTGGAGAATTCTGATTTTGGGCTTGAACGTGAAATTGGTCCGGATGAGAGTTATTCGGGTCGGGTTTTCCCTAAAGCTGAGCTGATTCCTTCTTCATCGAGTAATAATAATAATCGGTGTGATTCTGGTGAAGTTGTTGATTGTGGTTGGTCTTTGTTTGATGATCTTATGTTTGATACTGTTTATGATGCTTCTGAATCGAGTTCAAATCAGATTGAGGTCGTCGAGGAGGAACCCACAAGCTTTGTGGTGAATCCCACAAG</genome_strand>
        <mrna_strand>GACCAGGCACTGAAAATCATCTTCACACATTCCACAAACCTACAAAAAGGCTTTTCTACCTCTTTTGCCCACAAAAATCACTAACCAAATTCTCATTCTTGAATTTGTTACAACTTACAAGTGTTTTTGCTGATAAATTTGGTGTTTAATTCCATTGGATTGAGCAAGGGGTTTGATTCTATTCATCTTTTTTTAGATGTCGAATTCATGTATGGTTGATGGATTTTTCTCAAAACTATCAGAGGATTTGATTCTCAATATATTTTTCAAGCTAGAAGATGATCCAAGGAACTGGGCTCGTTTATCTTGTGTTTCAACGAAATTTGCATTTCTGATTCATACTATTTGTTACAAATCGAAATGCTCTGCAACTATTCCTTCGGTTGTTTCCGATCTAGTAAGTTCGACGTCTTCGTGTCCTCCAGGTGGGTGGTCTTCACTTTACAAGCTAGCTGTATGCTGTCCGGGTCTTCATCAAGCTGGTGTTCTTCTGGAGAATTCTGATTTTGGGCTTGAACGTGAAATTGGTCCGGATGAGAGTTATTCGGGTCGGGTTTTCCCTAAAGCTGAGCTGATTCCTTCTTCATCGAGTAATAATAATAATCGGTGTGATTCTGGTGAAGTTGTTGATTGTGGTTGGTCTTTGTTTGATGATCTTATGTTTGATACTGTTTATGATGCTTCTGAATCGAGTTCAAATCACATTGAGGTCGTCGAGGAGGAACCCACAAGCTTTGTGGTGAATCCCACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U313754" ref_strand="+" ref_description="SGN-U313754        Tomato 200607 #1 [28 ESTs aligned] arabidopsis/peptide: AT1G02840.3 | Symbol: None | pre-mRNA splicing factor SF2 (SF2) / SR1 protein, identical to SP:O22315 Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis thaliana} | chr1:626741-629819 FORWARD | Aliases: None (evalue: 2e-71, score=267) genbank/nr: gi|50939903|ref|XP_479479.1| putative pre-mRNA splicing factor SF2 [Oryza sativa (japonica cultivar-group)] >gi|33146854|dbj|BAC79849.1| putative pre-mRNA splicing factor SF2 [Oryza sativa (japonica cultivar-group)] (evalue: 2e-70, score=270)">
      <seq>tcgatcttcccaggtatgttctctaatggaggttacgtaaatcgttttttttagctttaattgatataatcatcaatatatcgtcaaaatatagttcaattttttccttctttcccatttaccttgcttgtcaatgcaaaaatgtccgggttgtataaattaatgtcagtaaaattgtggaaagttgctttgtttattctttagatgatcaagatacgtttctgcgactgaaattggttttgcaactgaataattactagagttgaagcttttatcctttttcttttcccgttttgtccttagagagaatgtatgaactgttttaagtcgttgttgttttttgcttaactgcaagaggtgcttttttcttgtccttgtggtcaattaactgcaagaggtgcttgtttcttgtttttgtggacaattgactgcaagtgaatgtggtttcgatcttcccaggaacaatgagtcggtcgagtaggacactttatgttggcaatcttcctggtgatgttcgtgagcgtgaagtggaagatctcttttacaagtatggaccgattgcacatattgagctgaaaattccaccaagaccccctggttatgcttttgttgagtttgaagaggctcgtgatgctgaagatgctattcgtggtcgtgatggctatgattttgatgggcaccgtctgcgggttgagcttgcacatggcgggcgtggtaactcatcatcaaatgatcgttatggtggtggcggtggcggccgtggtcagcgtggtggaggagtgtcaagacgttcagattatcgagtgttagttacaggattaccccattcagcatcgtggcaggatctcaaggatcacatgcgccgtgctggggatgtttgtttctcccaagttttccgtgacgggagtggaaccactggtataattgattatacaaactatgatgacatgaaatatgctatcaaaaagcttgatgactctgagtttcgaaatgccttttctcgtgcgacaattcgagttaaagaatatgaccgcagtcgaagtcgcagccgcagtcgcagtcgcagtcgctcttactccagagggaagagtgttagtcgaagccgaagccgtagccgaagtagaagccgaagcaagagcaaaagcaaatctcctaaagttaagtcttcaaagcgctcaagatctcgttcaaggtctgtgtcttctcagtctcgttctgggtcaaaaggacgtcctgtctcaagatctccatcaaggtccagatcaccagcaccagctcgttcaaaacaattaagtgaaagtcccaaaagacgcactcccagcagtagccccaaaagacgcactccaagcagaagcccaagccggagtaggagccgtagccaaagtttgtccaggtaagattgctggaatcatcagtgattgagggtgccatcatgctgtgtttgagcagcctggtccacagttgggagcccaagtgaccggaagagtctgttgctctgcttacatcaaaatatttctgtgtcattgaaccatgtcaagactgtaataattattatacttgtttttgtagctcttaatcttggtaaaagactgcaatatagtagatgatattgtgaaaaacggaatttaatttccttgaattgcagattattgttggtcgaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="68908" stop="62107"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68608" g_stop="68063" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="548" r_length="548" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68062" i_stop="67796" i_length="267">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67795" g_stop="67730" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="614" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67729" i_stop="67628" i_length="102">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67627" g_stop="67553" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="615" r_stop="689" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67552" i_stop="67458" i_length="95">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67457" g_stop="67343" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="690" r_stop="804" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67342" i_stop="67258" i_length="85">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67257" g_stop="67211" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="805" r_stop="851" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67210" i_stop="67096" i_length="115">
            <donor d_prob="0.611" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67095" g_stop="67038" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="852" r_stop="909" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="67037" i_stop="65269" i_length="1769">
            <donor d_prob="0.732" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="65268" g_stop="65219" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="910" r_stop="959" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="65218" i_stop="65092" i_length="127">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="65091" g_stop="65035" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="960" r_stop="1016" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="65034" i_stop="64952" i_length="83">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.791" a_score="0.73"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="64951" g_stop="64830" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1017" r_stop="1144" r_length="128" r_score="0.902"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="64829" i_stop="64748" i_length="82">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.433" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="64747" g_stop="64649" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1145" r_stop="1243" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="64648" i_stop="63076" i_length="1573">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="63075" g_stop="63042" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1244" r_stop="1277" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="63041" i_stop="62869" i_length="173">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="62868" g_stop="62753" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1278" r_stop="1393" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="62752" i_stop="62674" i_length="79">
            <donor d_prob="0.906" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="62673" g_stop="62401" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="1394" r_stop="1666" r_length="273" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-U313754" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>1658</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U313754" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68608" e_stop="68063"/>
          <exon e_start="67795" e_stop="67730"/>
          <exon e_start="67627" e_stop="67553"/>
          <exon e_start="67457" e_stop="67343"/>
          <exon e_start="67257" e_stop="67211"/>
          <exon e_start="67095" e_stop="67038"/>
          <exon e_start="65268" e_stop="65219"/>
          <exon e_start="65091" e_stop="65035"/>
          <exon e_start="64951" e_stop="64830"/>
          <exon e_start="64747" e_stop="64649"/>
          <exon e_start="63075" e_stop="63042"/>
          <exon e_start="62868" e_stop="62753"/>
          <exon e_start="62673" e_stop="62401"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGATCTTCCCAGGTATGTTCTCTAATGGAGGTTACGTAAATCGTTTTTTTTAGCTTTAATTGATATAATCATCAATATATCGTCAAAATATAGTTCAATTTTTTCCTTCTTTCCCATTTACCTTGCTTGTCAATGCAAAAATGTCCGGGTTGTATAAATTAATGTCAGTAAAATTGTGGAAAGTTGCTTTGTTTATTCTTTAGATGATCAAGATACGTTTCTGCGACTGAAATTGGTTTTGCAACTGAATAATTACTAGAGTTGAAGCTTTTATCCTTTTTCTTTTCCCGTTTTGTCCTTAGAGAGAATGTATGAACTGTTTTAAGTCGTTGTTGTTTTTTGCTTAACTGCAAGAGGTGCTTTTTTCTTGTCCTTGTGGTCAATTAACTGCAAGAGGTGCTTGTTTCTTGTTTTTGTGGACAATTGACTGCAAGTGAATGTGGTTTTG-CCTT-TCAGGAACAATGAGTCGGTCGAGTAGGACACTTTATGTTGGCAATCTTCCTGGTGATGTTCGTGAGCGTGAAGTGGAAGATCTCTTTTACAAGGTGCTTATACTCTAGATGGCTCCCTACATTCTTTGATATCATTTCATAATGCTTATAAACAAAAAGAAAAATGATTAGAAGTAAAATTATGTTTTTGAGTGAAATGGGTACAAATAGAGTGGTATGGATATAGGGAATTCATTATCGACAAACTCAAATTAAGGAGTATTTCTTTTGTAAGGCTTGTGCACATGTTTAATTGTTCTGTCACAATTTAACAGATTTTAACTGTTAGAAACTTATAAACAATTTGATGTGTGAGTGCAGTATGGACCGATTGCACATATTGAGCTGAAAATTCCACCAAGACCCCCTGGTTATGCTTTTGTTGAGGTGAGTTTGAGCTGCCTTGGTTCTGATGGATTTCATTAGATCAGCCTGCTATGCGCCTTTTAAAGCTATTCTGACCTTTATATTGGCCAAAAACTATAACAGTTTGAAGAGGCTCGTGATGCTGAAGATGCTATTCGTGGTCGTGATGGCTATGATTTTGATGGGCACCGTCTGCGGGTCGGTCAAACTTATAGTTAGCGTATAGTTTACACAAGGTTACTAGTTTTTGCCTTGTTGGATGTTGAATCTATTACAATTGCTCATACTGGCAGGTTGAGCTTGCACATGGCGGGCGTGGTAACTCATCATCAAATGATCGTTATGGTGGTGGCGGTGGCGGCCGTGGTCAGCGTGGTGGAGGAGTGTCAAGACGTTCAGATTATCGAGGTGTGTCTTATGGGTTATGTGCTTTCTACATTGGAATACATGTTATATCTTTTCTTATGTTCTGATATCTTTTGTTGTATTTCAGTGTTAGTTACAGGATTACCCCATTCAGCATCGTGGCAGGATCTCAAGGTGAGTCGGTGTCTTTGAGTTGTGAATCATAGGGACTTACCAAGAAAGTGATCCTCCTTTCCCTCAAAATTATTCTGTAATTTCTGAGTATTGTTAACTTTTATTTCTTATGTAGGATCACATGCGCCGTGCTGGGGATGTTTGTTTCTCCCAAGTTTTCCGTGACGGGAGTGGTAAGATTTAAACAGCTAATGGCAGATCTACTTTTTCTCTTTGAACTGGTATAATGGTTTAACTGTCAAGCACACGGAACTCCTCCATGTGGAATGGCAACCTACAATGATACACCAAGCAATAAGTCTTTGATGTGAGCTTACAATGGTACTCACTAATTGTACTGATGATTTGGAGAAAGACCTGTATACAAACTGTATATCGAAAGATGGAGAATTCTACTGTAACACACTATTCCTCTTCTTGCTCATCGTGGTTGACCTGTCATAGGAATAGGTTAAGGATACTTTTCTTTATATCATAGTGTAAATTAATGAGTTTATAATCAAGTATTATATTAAGGGTGCAAGTCTGTCATTGTTAATTATTACTGTCATTCTTTTTATATTTAGAGCTTTGGTAATAACTGTGGGTTCATACCTGGGATATCTGATAAATTTGGAAAAATGCATAGGATCTATGACTCATAATTTGGGTTTTCAGTATAAGCTGATAAGTCTTTCTTTGTCTAGAAAAATGTTATATTGAAGGAAAAATAATATAGGAGAGATCATCTCTTCAGAAAATGTAGTGGAAATAATCATCGACATATTGATAACAATATTACTTGATGAAAACAGGATAAGGTCTTGACAAACTGGAGGGGAAAATATGCAGGTGGAGCAAAAAATTGGGAGGAAAGATGGAAAACTAAATATAAAAGAAACACTGAGTAGGAAAGAAGCACAAGTTAGATGTGTTATGGTTCCTCGAGGGTAGGGTGGGGTGGGGAGACCAACGTTGCTGCAAGCTTGAGGTCGGGGTAGGTCAAAAACCTAGAGGTGTTGGGGCATCATTGGTTGGTGGCTGGGTGAGGGCAAGATAAGTTCTGCTCTCAGGAAGAAATGGTGAAAAAGATGAAGAGAGATGTGTATTTTTGTTGTCTTCCCATCTAAGAATGTCTCGCCCTTGCCCATCTATTGTCCTCTTTTGCTCTTCTAATACAATTTGTTAATTTGGATTATGATCCTGTTATTTATCCCATTTTTTTCTGAGGACTATCATCCCTTGAGACAATTTAAAAGCTGGTTATCGACTGTGCTGCCTAATGTTTGGTGGTTGGTTGGATAAATTTGTTTAGACTAATCTGATGCACCTGATGACCCCATTAACTTGTATGATGTTTTGGATTTCTTTCCCCGTTTCTTTTTGAATTTTATTTTGGTACAACTGTTTGAAGTCTTTAACTAGATGCTAACCCAATGTGCCAAAATGTTCCCACGCTCTATGTTGATGACTGCATATGCAATTTTCTCCTCTATGATTCATTTCTACGTTTTCTGATCACGTGCAGAACTTGTCATATTGGAGGGTCCACTTTTGTTTTTTAAGGGAATGAAAATTAAGAGGAAGCAAATGATATTTGATGTAGGCCGAGAAAACTTGTTTTTTGAATCTTTTTATTGATATTTTTTGATTCTTTTTTGGTTTCAGTAAACATTTTGGTGCGATTTGCAAAAGACAACTTTTGTTTTAAGCAACAGTTGTTTTTAGTTTCCTGTAAAACTTCACCATAAATTTTTCTAATTCAAGTTTACCATAAACTATTGTGATCTAACTATTCCTAGAGTTTTCTGAATCCATAATGGCACACAAAATCGCTCTTTGCTTTAACTTGTTAGTGCACAATGCTTATTTTTACCCTGTAGGAAGCATCTTGATCTTCATATTACTGTCATTTCTGGTCCACAAGTTATTCTGATATCAACAAATTTGCTTGGACTTTCAGGAACCACTGGTATAATTGATTATACAAACTATGATGACATGAAATATGCTGTAAGCCATCTTCTCTTTTCTCCTTCCCTTTAGTTGGGTTTCCTTCACCTTGATGCTGTTGACAATATTTGATTTTTCCTTTATACAACTAAGAGGTGCAGCTAATATTATCCTTTCATGTGTATAGATCAAAAAGCTTGATGACTCTGAGTTTCGAAATGCCTTTTCTCGTGCGACAATTCGAGTATGACACAAACAATTTTCAATTTCTTCAATTATCGTGTTGATGCCGTCATTTGCTATTCTCAAAACCTCCACCTTCTGTAGGTTAAAGAATATGACCGCAGTCGAAGTCGCA---GC---CGCAGTCGCAGTCGCTCTTACTCCAGAGGGAAGAGTGTTAGTCGAAGCCGAAGCCGTAGCCGAAGTAGAAGCCGAAGCAAGAGCAAAAGGTCTAACACATTACACATATATGTCTGGACTAGTGGTTTTACTTTAATGCAAATAGGGCCTTATTAATATTTGTCTTAGCAGCAAATCTCCTAAAGTTAAGTCTTCAAAGCGCTCAAGATCTCGTTCAAGGTCTGTGTCTTCTCAGTCTCGTTCTGGGTCAAAAGGACGTCCTGTCTCAAGGTAATATTCTGCTTTCTCTTTCTGTTTTTGTTTCGGGATGGGTATAAAAGCATTACATAGTACAAGGTTAATATTTGCATAAACTGCAAATCTTTCATTCTTTATTATCTTATTAGAGTTCTTCAATTTCTCAAGTTGTTCTTCACACTCAAAGTATTGTTGATTTAAGATCTTTAAATCTAAAATGCTCTTGCAGTTGATTACTTTGCCTTTTATCTTCTATGTTATTGTTAGTTTGATGTGCTCACTGCAAAGTTCACATCAAAATGGTGTAGACTCCTGGGTGCTTTAGTCTTCTTTGTTTAACTTGTCCTTGATGCTTTCCCCTTGGTTCTTTCTAAACAATATAGCAATGAGAAGCTATTAGTCTCATATATCATGCATAAAACTCCAAATCCAATCTTATTTGTTTTTTATTATCTTGTCCCTCTAACACAATCTTGTGGTAATTTGTCATATGTGGGGGTACAACGGATTTATGGTAAGTTGTAGAATACAATTTTCCAAAGGTTGCATTTTCTGGCGGCAATCTAGTTGGTAATGTGTAGTTCTGCATACTCTAGTGGGACAACGTGTAGTTACATTTATGTTATTTTCTTCTGTTTCAGGACGGATTTTAAGGGGTTTAGAACTTGCAATGACGTTATCAAACCATTAGAATCAACCAAATGATTGAAAACTATGGTTTCTCACTTTTTTTCTCCATTTTTTCCCCCTATGAAACAAGATTTCATATTCATTTGTTTCCTGCTATTTCAGGATTTTCCAACTATGTTTGCTGATCAATGTGTAACCATTTAGTAAAGACTGGTCATTAGATAGGTTCATGTCTGTTGAAACAAAATTAGAAATTGGAAAGGTTTAGGTCTGAGCAATACAGAAGTAAAGTTTAGTGTTTGAAGGGGAGACTTGGTTCATTTACTTAAGTCATTTTGGAACTGTATTCTAGGGGAAACATACTGCCTTATCAAGGTGTCGTCTTTTATCGTTTCTTTTATAAGTATGAAAAGTCACCTTGTTTGTTTTTCTAGATTTTGGATATGTGCGGCGGTTTGTGGATTTGCATATTAGGATCTTGAGTGGATAATGGTCTTGCCTGCAACTCTTTTTGTTGTGGAGGTACGATGTTTTCTAGATGGCAGCTTTGGGTCTTTTTGTGATGTCTCTCTTCTAATGAGCATCGTGAAATGTTCCATGGGTGCTAGATTGGGATCATGAAGATCACGGATTCTATGGTGGAGCTGGACTGGGGAACCAACTGCCACCTGAATTTGGATCACCACCTATTTTTTGGTAGAAGCATGTTCTAACAAAGCGAAATAAAGACTAGTTCATTCTTTTGGTATCCTGCTAATTGGTCTCTTTGACTGCTCGAATTTAAAATATTACATAGTCTCAATGGTGTAACTTGCATTGTTTTATACTTGCCATATTTTCCACTCTGGATTCTGCCAAATTGCTACTTTCATTATGGTCATGCTGAGGTGGAAGTGAAATCAAAGCAGTTGTGGAGGAAACTTGTTAAGTGGCGGGACTGGGATATTAAATTAAGTTCTTTCTGGAAATTTTGCAGATCTCCATCAAGGTCCAGATCACCAGCACCAGCTGTAAGTCAAATCTACATGTTTTAAAGTGAACGGAATAACCCAAAATTCAAATATATTGGGATCATCCGTCTTGTCTGTCTTTTTTTTGTGCTTACCTGGCCTTTTCAAAGTACATTCTCTCTTTTCTCTGTCTACATAATTATTGCTTTGTATTATGACTGGGTTAATTACAGCGTTCAAAACAATTAAGTGAAAGTCCCAAAAGACGCACTCCCAGCAGTAGCCCCAAAAGACGCACTCCAAGCAGAAGCCCAAGCCGGAGTAGGAGCCGTAGCCAAAGTTTGTCCAGGTCTTACTTCTGTGGCTTGTCGTATATCTTTCAATGTTTGACCGTTTCGTTAATTTTTTCTCCTCGCCTCTTTTTATAGGTAAGATTGCTGGAATCATCAGTGATTGAGGGTGCCATCATGCTGTGTTTGAGCAGCCTGGTCCACAGTTGGGAGCCCAAGTGACCGGAAGAGTCTGTTGCTCTGCTTACATCAAAATATTTCTGTGTCATTGAACCATGTCAAGACTGTAATAATTATTATACTTGTTTTTGTAGCTCTTAATCTTGGTAAAAGACTGCAATATAGTAGATGATATTGTGAAAAACGGAATTTAATTTCCTTGAATTGCAGATTATTGTTGGTCGACTGATG</genome_strand>
        <mrna_strand>TCGATCTTCCCAGGTATGTTCTCTAATGGAGGTTACGTAAATCGTTTTTTTTAGCTTTAATTGATATAATCATCAATATATCGTCAAAATATAGTTCAATTTTTTCCTTCTTTCCCATTTACCTTGCTTGTCAATGCAAAAATGTCCGGGTTGTATAAATTAATGTCAGTAAAATTGTGGAAAGTTGCTTTGTTTATTCTTTAGATGATCAAGATACGTTTCTGCGACTGAAATTGGTTTTGCAACTGAATAATTACTAGAGTTGAAGCTTTTATCCTTTTTCTTTTCCCGTTTTGTCCTTAGAGAGAATGTATGAACTGTTTTAAGTCGTTGTTGTTTTTTGCTTAACTGCAAGAGGTGCTTTTTTCTTGTCCTTGTGGTCAATTAACTGCAAGAGGTGCTTGTTTCTTGTTTTTGTGGACAATTGACTGCAAGTGAATGTGGTTTCGATCTTCCCAGGAACAATGAGTCGGTCGAGTAGGACACTTTATGTTGGCAATCTTCCTGGTGATGTTCGTGAGCGTGAAGTGGAAGATCTCTTTTACAAG...........................................................................................................................................................................................................................................................................TATGGACCGATTGCACATATTGAGCTGAAAATTCCACCAAGACCCCCTGGTTATGCTTTTGTTGAG......................................................................................................TTTGAAGAGGCTCGTGATGCTGAAGATGCTATTCGTGGTCGTGATGGCTATGATTTTGATGGGCACCGTCTGCGG...............................................................................................GTTGAGCTTGCACATGGCGGGCGTGGTAACTCATCATCAAATGATCGTTATGGTGGTGGCGGTGGCGGCCGTGGTCAGCGTGGTGGAGGAGTGTCAAGACGTTCAGATTATCGAG.....................................................................................TGTTAGTTACAGGATTACCCCATTCAGCATCGTGGCAGGATCTCAAG...................................................................................................................GATCACATGCGCCGTGCTGGGGATGTTTGTTTCTCCCAAGTTTTCCGTGACGGGAGTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACCACTGGTATAATTGATTATACAAACTATGATGACATGAAATATGCT...............................................................................................................................ATCAAAAAGCTTGATGACTCTGAGTTTCGAAATGCCTTTTCTCGTGCGACAATTCGA...................................................................................GTTAAAGAATATGACCGCAGTCGAAGTCGCAGCCGCAGTCGCAGTCGCAGTCGCTCTTACTCCAGAGGGAAGAGTGTTAGTCGAAGCCGAAGCCGTAGCCGAAGTAGAAGCCGAAGCAAGAGCAAAAG..................................................................................CAAATCTCCTAAAGTTAAGTCTTCAAAGCGCTCAAGATCTCGTTCAAGGTCTGTGTCTTCTCAGTCTCGTTCTGGGTCAAAAGGACGTCCTGTCTCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCCATCAAGGTCCAGATCACCAGCACCAGCT.............................................................................................................................................................................CGTTCAAAACAATTAAGTGAAAGTCCCAAAAGACGCACTCCCAGCAGTAGCCCCAAAAGACGCACTCCAAGCAGAAGCCCAAGCCGGAGTAGGAGCCGTAGCCAAAGTTTGTCCAG...............................................................................GTAAGATTGCTGGAATCATCAGTGATTGAGGGTGCCATCATGCTGTGTTTGAGCAGCCTGGTCCACAGTTGGGAGCCCAAGTGACCGGAAGAGTCTGTTGCTCTGCTTACATCAAAATATTTCTGTGTCATTGAACCATGTCAAGACTGTAATAATTATTATACTTGTTTTTGTAGCTCTTAATCTTGGTAAAAGACTGCAATATAGTAGATGATATTGTGAAAAACGGAATTTAATTTCCTTGAATTGCAGATTATTGTTGGTCGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U313756" ref_strand="+" ref_description="SGN-U313756        Tomato 200607 #1 [13 ESTs aligned] arabidopsis/peptide: AT1G02840.3 | Symbol: None | pre-mRNA splicing factor SF2 (SF2) / SR1 protein, identical to SP:O22315 Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis thaliana} | chr1:626741-629819 FORWARD | Aliases: None (evalue: 2e-71, score=267) genbank/nr: gi|50939903|ref|XP_479479.1| putative pre-mRNA splicing factor SF2 [Oryza sativa (japonica cultivar-group)] >gi|33146854|dbj|BAC79849.1| putative pre-mRNA splicing factor SF2 [Oryza sativa (japonica cultivar-group)] (evalue: 2e-70, score=270)">
      <seq>tcgatcttcccaggaacaatgagtcggtcgagtaggacactttatgttggcaatcttcctggtgatgttcgtgagcgtgaagtggaagatctcttttacaagtatggaccgattgcacatattgagctgaaaattccaccaagaccccctggttatgcttttgttgagtttgaagaggctcgtgatgctgaagatgctattcgtggtcgtgatggctatgattttgatgggcaccgtctgcgggttgagcttgcacatggcgggcgtggtaactcatcatcaaatgatcgttatggtggtggcggtggcggccgtggtcagcgtggtggaggagtgtcaagacgttcagattatcgagtgttagttacaggattaccccattcagcatcgtggcaggatctcaaggatcacatgcgccgtgctggggatgtttgtttctcccaagttttccgtgacgggagtggaaccactggtataattgattatacaaactatgatgacatgaaatatgctatcaaaaagcttgatgactctgagtttcgaaatgccttttctcgtgcgacaattcgagttaaagaatatgaccgcagtcgaagtcgcagccgcagtcgcagtcgctcttactccagagggaagagtgttagtcgaagccgaagccgtagccgaagtagaagccgaagcaagagcaaaagcaaatctcctaaagttaagtcttcaaagcgctcaagatctcgttcaaggtctgtgtcttctcagtctcgttctgggtcaaaaggacgtcctgtctcaagattttggatatgtgcggcggtttgtggatttgcatattaggatcttgagtggataatggtcttgcctgcaactctttttgttgtggagattgggatcatgaagatcacggattctatggtggagctggactggggaaccaactgccacctgaatttggatcaccacctattttttggtagaagcatgttctaacaaagcgaaataaagactagttcattcttttggtatcctgctaattggtctctttgactgctcgaatttaaaatattacatagtctcaatggtgtaacttgcatcgttttatacttgccatattttccactctggattctgccaaattgctactttcattatggtcatgctgaggtggaagtgaaatcaaagcagttgtggaggaaacttgttaagtggcgggactgggatattaaattaagttctttctggaaattttgcagatctccatcaaggtccagatcaccagcaccagctcgttcaaaacaattaagtgaaagtcccaaaagacgcactcccagcagtagccccaaaagacgcactccaagcagaagcccaagccggagtaggagccgtagccaaagtttgtccaggtaagattgctggaatcatcagtgattgagggtgccatcatgctgtgtttgagcagcctggtccacagttgggagcccaagtgaccggaagagtctgttgctctgcttacatcaaaatatttctgtgtcattgaaccatgtcaagactgtaataattattatacttgtttttgtagctcttaatcttggtaaaagactgcaatatagtagatgatattgtgaaaaacggaatttaatttccttgaattgcagattattgttggtcgactgaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="68459" stop="62103"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68151" g_stop="68063" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="102" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68062" i_stop="67796" i_length="267">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67795" g_stop="67730" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="168" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67729" i_stop="67628" i_length="102">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67627" g_stop="67553" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="243" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67552" i_stop="67458" i_length="95">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67457" g_stop="67343" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="358" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67342" i_stop="67258" i_length="85">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67257" g_stop="67211" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="405" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67210" i_stop="67096" i_length="115">
            <donor d_prob="0.611" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67095" g_stop="67038" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="463" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="67037" i_stop="65269" i_length="1769">
            <donor d_prob="0.732" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="65268" g_stop="65219" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="513" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="65218" i_stop="65092" i_length="127">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="65091" g_stop="65035" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="570" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="65034" i_stop="64952" i_length="83">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.791" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="64951" g_stop="64830" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="692" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="64829" i_stop="64748" i_length="82">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.433" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="64747" g_stop="64649" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="693" r_stop="791" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="64648" i_stop="63618" i_length="1031">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.846" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="63617" g_stop="63530" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="792" r_stop="879" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="63529" i_stop="63444" i_length="86">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="63443" g_stop="63042" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="880" r_stop="1281" r_length="402" r_score="0.998"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="63041" i_stop="62869" i_length="173">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="62868" g_stop="62753" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1282" r_stop="1397" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="62752" i_stop="62674" i_length="79">
            <donor d_prob="0.906" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="62673" g_stop="62401" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="1398" r_stop="1670" r_length="273" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1671" polyA_stop="1686"/>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-U313756" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1657</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U313756" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68151" e_stop="68063"/>
          <exon e_start="67795" e_stop="67730"/>
          <exon e_start="67627" e_stop="67553"/>
          <exon e_start="67457" e_stop="67343"/>
          <exon e_start="67257" e_stop="67211"/>
          <exon e_start="67095" e_stop="67038"/>
          <exon e_start="65268" e_stop="65219"/>
          <exon e_start="65091" e_stop="65035"/>
          <exon e_start="64951" e_stop="64830"/>
          <exon e_start="64747" e_stop="64649"/>
          <exon e_start="63617" e_stop="63530"/>
          <exon e_start="63443" e_stop="63042"/>
          <exon e_start="62868" e_stop="62753"/>
          <exon e_start="62673" e_stop="62401"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACAATGAGTCGGTCGAGTAGGACACTTTATGTTGGCAATCTTCCTGGTGATGTTCGTGAGCGTGAAGTGGAAGATCTCTTTTACAAGGTGCTTATACTCTAGATGGCTCCCTACATTCTTTGATATCATTTCATAATGCTTATAAACAAAAAGAAAAATGATTAGAAGTAAAATTATGTTTTTGAGTGAAATGGGTACAAATAGAGTGGTATGGATATAGGGAATTCATTATCGACAAACTCAAATTAAGGAGTATTTCTTTTGTAAGGCTTGTGCACATGTTTAATTGTTCTGTCACAATTTAACAGATTTTAACTGTTAGAAACTTATAAACAATTTGATGTGTGAGTGCAGTATGGACCGATTGCACATATTGAGCTGAAAATTCCACCAAGACCCCCTGGTTATGCTTTTGTTGAGGTGAGTTTGAGCTGCCTTGGTTCTGATGGATTTCATTAGATCAGCCTGCTATGCGCCTTTTAAAGCTATTCTGACCTTTATATTGGCCAAAAACTATAACAGTTTGAAGAGGCTCGTGATGCTGAAGATGCTATTCGTGGTCGTGATGGCTATGATTTTGATGGGCACCGTCTGCGGGTCGGTCAAACTTATAGTTAGCGTATAGTTTACACAAGGTTACTAGTTTTTGCCTTGTTGGATGTTGAATCTATTACAATTGCTCATACTGGCAGGTTGAGCTTGCACATGGCGGGCGTGGTAACTCATCATCAAATGATCGTTATGGTGGTGGCGGTGGCGGCCGTGGTCAGCGTGGTGGAGGAGTGTCAAGACGTTCAGATTATCGAGGTGTGTCTTATGGGTTATGTGCTTTCTACATTGGAATACATGTTATATCTTTTCTTATGTTCTGATATCTTTTGTTGTATTTCAGTGTTAGTTACAGGATTACCCCATTCAGCATCGTGGCAGGATCTCAAGGTGAGTCGGTGTCTTTGAGTTGTGAATCATAGGGACTTACCAAGAAAGTGATCCTCCTTTCCCTCAAAATTATTCTGTAATTTCTGAGTATTGTTAACTTTTATTTCTTATGTAGGATCACATGCGCCGTGCTGGGGATGTTTGTTTCTCCCAAGTTTTCCGTGACGGGAGTGGTAAGATTTAAACAGCTAATGGCAGATCTACTTTTTCTCTTTGAACTGGTATAATGGTTTAACTGTCAAGCACACGGAACTCCTCCATGTGGAATGGCAACCTACAATGATACACCAAGCAATAAGTCTTTGATGTGAGCTTACAATGGTACTCACTAATTGTACTGATGATTTGGAGAAAGACCTGTATACAAACTGTATATCGAAAGATGGAGAATTCTACTGTAACACACTATTCCTCTTCTTGCTCATCGTGGTTGACCTGTCATAGGAATAGGTTAAGGATACTTTTCTTTATATCATAGTGTAAATTAATGAGTTTATAATCAAGTATTATATTAAGGGTGCAAGTCTGTCATTGTTAATTATTACTGTCATTCTTTTTATATTTAGAGCTTTGGTAATAACTGTGGGTTCATACCTGGGATATCTGATAAATTTGGAAAAATGCATAGGATCTATGACTCATAATTTGGGTTTTCAGTATAAGCTGATAAGTCTTTCTTTGTCTAGAAAAATGTTATATTGAAGGAAAAATAATATAGGAGAGATCATCTCTTCAGAAAATGTAGTGGAAATAATCATCGACATATTGATAACAATATTACTTGATGAAAACAGGATAAGGTCTTGACAAACTGGAGGGGAAAATATGCAGGTGGAGCAAAAAATTGGGAGGAAAGATGGAAAACTAAATATAAAAGAAACACTGAGTAGGAAAGAAGCACAAGTTAGATGTGTTATGGTTCCTCGAGGGTAGGGTGGGGTGGGGAGACCAACGTTGCTGCAAGCTTGAGGTCGGGGTAGGTCAAAAACCTAGAGGTGTTGGGGCATCATTGGTTGGTGGCTGGGTGAGGGCAAGATAAGTTCTGCTCTCAGGAAGAAATGGTGAAAAAGATGAAGAGAGATGTGTATTTTTGTTGTCTTCCCATCTAAGAATGTCTCGCCCTTGCCCATCTATTGTCCTCTTTTGCTCTTCTAATACAATTTGTTAATTTGGATTATGATCCTGTTATTTATCCCATTTTTTTCTGAGGACTATCATCCCTTGAGACAATTTAAAAGCTGGTTATCGACTGTGCTGCCTAATGTTTGGTGGTTGGTTGGATAAATTTGTTTAGACTAATCTGATGCACCTGATGACCCCATTAACTTGTATGATGTTTTGGATTTCTTTCCCCGTTTCTTTTTGAATTTTATTTTGGTACAACTGTTTGAAGTCTTTAACTAGATGCTAACCCAATGTGCCAAAATGTTCCCACGCTCTATGTTGATGACTGCATATGCAATTTTCTCCTCTATGATTCATTTCTACGTTTTCTGATCACGTGCAGAACTTGTCATATTGGAGGGTCCACTTTTGTTTTTTAAGGGAATGAAAATTAAGAGGAAGCAAATGATATTTGATGTAGGCCGAGAAAACTTGTTTTTTGAATCTTTTTATTGATATTTTTTGATTCTTTTTTGGTTTCAGTAAACATTTTGGTGCGATTTGCAAAAGACAACTTTTGTTTTAAGCAACAGTTGTTTTTAGTTTCCTGTAAAACTTCACCATAAATTTTTCTAATTCAAGTTTACCATAAACTATTGTGATCTAACTATTCCTAGAGTTTTCTGAATCCATAATGGCACACAAAATCGCTCTTTGCTTTAACTTGTTAGTGCACAATGCTTATTTTTACCCTGTAGGAAGCATCTTGATCTTCATATTACTGTCATTTCTGGTCCACAAGTTATTCTGATATCAACAAATTTGCTTGGACTTTCAGGAACCACTGGTATAATTGATTATACAAACTATGATGACATGAAATATGCTGTAAGCCATCTTCTCTTTTCTCCTTCCCTTTAGTTGGGTTTCCTTCACCTTGATGCTGTTGACAATATTTGATTTTTCCTTTATACAACTAAGAGGTGCAGCTAATATTATCCTTTCATGTGTATAGATCAAAAAGCTTGATGACTCTGAGTTTCGAAATGCCTTTTCTCGTGCGACAATTCGAGTATGACACAAACAATTTTCAATTTCTTCAATTATCGTGTTGATGCCGTCATTTGCTATTCTCAAAACCTCCACCTTCTGTAGGTTAAAGAATATGACCGCAGTCGAAGTCGCAGCCGCAGTCGCAGTCGCTCTTACTCCAGAGGGAAGAGTGTTAGTCGAAGCCGAAGCCGTAGCCGAAGTAGAAGCCGAAGCAAGAGCAAAAGGTCTAACACATTACACATATATGTCTGGACTAGTGGTTTTACTTTAATGCAAATAGGGCCTTATTAATATTTGTCTTAGCAGCAAATCTCCTAAAGTTAAGTCTTCAAAGCGCTCAAGATCTCGTTCAAGGTCTGTGTCTTCTCAGTCTCGTTCTGGGTCAAAAGGACGTCCTGTCTCAAGGTAATATTCTGCTTTCTCTTTCTGTTTTTGTTTCGGGATGGGTATAAAAGCATTACATAGTACAAGGTTAATATTTGCATAAACTGCAAATCTTTCATTCTTTATTATCTTATTAGAGTTCTTCAATTTCTCAAGTTGTTCTTCACACTCAAAGTATTGTTGATTTAAGATCTTTAAATCTAAAATGCTCTTGCAGTTGATTACTTTGCCTTTTATCTTCTATGTTATTGTTAGTTTGATGTGCTCACTGCAAAGTTCACATCAAAATGGTGTAGACTCCTGGGTGCTTTAGTCTTCTTTGTTTAACTTGTCCTTGATGCTTTCCCCTTGGTTCTTTCTAAACAATATAGCAATGAGAAGCTATTAGTCTCATATATCATGCATAAAACTCCAAATCCAATCTTATTTGTTTTTTATTATCTTGTCCCTCTAACACAATCTTGTGGTAATTTGTCATATGTGGGGGTACAACGGATTTATGGTAAGTTGTAGAATACAATTTTCCAAAGGTTGCATTTTCTGGCGGCAATCTAGTTGGTAATGTGTAGTTCTGCATACTCTAGTGGGACAACGTGTAGTTACATTTATGTTATTTTCTTCTGTTTCAGGACGGATTTTAAGGGGTTTAGAACTTGCAATGACGTTATCAAACCATTAGAATCAACCAAATGATTGAAAACTATGGTTTCTCACTTTTTTTCTCCATTTTTTCCCCCTATGAAACAAGATTTCATATTCATTTGTTTCCTGCTATTTCAGGATTTTCCAACTATGTTTGCTGATCAATGTGTAACCATTTAGTAAAGACTGGTCATTAGATAGGTTCATGTCTGTTGAAACAAAATTAGAAATTGGAAAGGTTTAGGTCTGAGCAATACAGAAGTAAAGTTTAGTGTTTGAAGGGGAGACTTGGTTCATTTACTTAAGTCATTTTGGAACTGTATTCTAGGGGAAACATACTGCCTTATCAAGGTGTCGTCTTTTATCGTTTCTTTTATAAGTATGAAAAGTCACCTTGTTTGTTTTTCTAGATTTTGGATATGTGCGGCGGTTTGTGGATTTGCATATTAGGATCTTGAGTGGATAATGGTCTTGCCTGCAACTCTTTTTGTTGTGGAGGTACGATGTTTTCTAGATGGCAGCTTTGGGTCTTTTTGTGATGTCTCTCTTCTAATGAGCATCGTGAAATGTTCCATGGGTGCTAGATTGGGATCATGAAGATCACGGATTCTATGGTGGAGCTGGACTGGGGAACCAACTGCCACCTGAATTTGGATCACCACCTATTTTTTGGTAGAAGCATGTTCTAACAAAGCGAAATAAAGACTAGTTCATTCTTTTGGTATCCTGCTAATTGGTCTCTTTGACTGCTCGAATTTAAAATATTACATAGTCTCAATGGTGTAACTTGCATTGTTTTATACTTGCCATATTTTCCACTCTGGATTCTGCCAAATTGCTACTTTCATTATGGTCATGCTGAGGTGGAAGTGAAATCAAAGCAGTTGTGGAGGAAACTTGTTAAGTGGCGGGACTGGGATATTAAATTAAGTTCTTTCTGGAAATTTTGCAGATCTCCATCAAGGTCCAGATCACCAGCACCAGCTGTAAGTCAAATCTACATGTTTTAAAGTGAACGGAATAACCCAAAATTCAAATATATTGGGATCATCCGTCTTGTCTGTCTTTTTTTTGTGCTTACCTGGCCTTTTCAAAGTACATTCTCTCTTTTCTCTGTCTACATAATTATTGCTTTGTATTATGACTGGGTTAATTACAGCGTTCAAAACAATTAAGTGAAAGTCCCAAAAGACGCACTCCCAGCAGTAGCCCCAAAAGACGCACTCCAAGCAGAAGCCCAAGCCGGAGTAGGAGCCGTAGCCAAAGTTTGTCCAGGTCTTACTTCTGTGGCTTGTCGTATATCTTTCAATGTTTGACCGTTTCGTTAATTTTTTCTCCTCGCCTCTTTTTATAGGTAAGATTGCTGGAATCATCAGTGATTGAGGGTGCCATCATGCTGTGTTTGAGCAGCCTGGTCCACAGTTGGGAGCCCAAGTGACCGGAAGAGTCTGTTGCTCTGCTTACATCAAAATATTTCTGTGTCATTGAACCATGTCAAGACTGTAATAATTATTATACTTGTTTTTGTAGCTCTTAATCTTGGTAAAAGACTGCAATATAGTAGATGATATTGTGAAAAACGGAATTTAATTTCCTTGAATTGCAGATTATTGTTGGTCGACTGATG</genome_strand>
        <mrna_strand>GAACAATGAGTCGGTCGAGTAGGACACTTTATGTTGGCAATCTTCCTGGTGATGTTCGTGAGCGTGAAGTGGAAGATCTCTTTTACAAG...........................................................................................................................................................................................................................................................................TATGGACCGATTGCACATATTGAGCTGAAAATTCCACCAAGACCCCCTGGTTATGCTTTTGTTGAG......................................................................................................TTTGAAGAGGCTCGTGATGCTGAAGATGCTATTCGTGGTCGTGATGGCTATGATTTTGATGGGCACCGTCTGCGG...............................................................................................GTTGAGCTTGCACATGGCGGGCGTGGTAACTCATCATCAAATGATCGTTATGGTGGTGGCGGTGGCGGCCGTGGTCAGCGTGGTGGAGGAGTGTCAAGACGTTCAGATTATCGAG.....................................................................................TGTTAGTTACAGGATTACCCCATTCAGCATCGTGGCAGGATCTCAAG...................................................................................................................GATCACATGCGCCGTGCTGGGGATGTTTGTTTCTCCCAAGTTTTCCGTGACGGGAGTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACCACTGGTATAATTGATTATACAAACTATGATGACATGAAATATGCT...............................................................................................................................ATCAAAAAGCTTGATGACTCTGAGTTTCGAAATGCCTTTTCTCGTGCGACAATTCGA...................................................................................GTTAAAGAATATGACCGCAGTCGAAGTCGCAGCCGCAGTCGCAGTCGCTCTTACTCCAGAGGGAAGAGTGTTAGTCGAAGCCGAAGCCGTAGCCGAAGTAGAAGCCGAAGCAAGAGCAAAAG..................................................................................CAAATCTCCTAAAGTTAAGTCTTCAAAGCGCTCAAGATCTCGTTCAAGGTCTGTGTCTTCTCAGTCTCGTTCTGGGTCAAAAGGACGTCCTGTCTCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTGGATATGTGCGGCGGTTTGTGGATTTGCATATTAGGATCTTGAGTGGATAATGGTCTTGCCTGCAACTCTTTTTGTTGTGGAG......................................................................................ATTGGGATCATGAAGATCACGGATTCTATGGTGGAGCTGGACTGGGGAACCAACTGCCACCTGAATTTGGATCACCACCTATTTTTTGGTAGAAGCATGTTCTAACAAAGCGAAATAAAGACTAGTTCATTCTTTTGGTATCCTGCTAATTGGTCTCTTTGACTGCTCGAATTTAAAATATTACATAGTCTCAATGGTGTAACTTGCATCGTTTTATACTTGCCATATTTTCCACTCTGGATTCTGCCAAATTGCTACTTTCATTATGGTCATGCTGAGGTGGAAGTGAAATCAAAGCAGTTGTGGAGGAAACTTGTTAAGTGGCGGGACTGGGATATTAAATTAAGTTCTTTCTGGAAATTTTGCAGATCTCCATCAAGGTCCAGATCACCAGCACCAGCT.............................................................................................................................................................................CGTTCAAAACAATTAAGTGAAAGTCCCAAAAGACGCACTCCCAGCAGTAGCCCCAAAAGACGCACTCCAAGCAGAAGCCCAAGCCGGAGTAGGAGCCGTAGCCAAAGTTTGTCCAG...............................................................................GTAAGATTGCTGGAATCATCAGTGATTGAGGGTGCCATCATGCTGTGTTTGAGCAGCCTGGTCCACAGTTGGGAGCCCAAGTGACCGGAAGAGTCTGTTGCTCTGCTTACATCAAAATATTTCTGTGTCATTGAACCATGTCAAGACTGTAATAATTATTATACTTGTTTTTGTAGCTCTTAATCTTGGTAAAAGACTGCAATATAGTAGATGATATTGTGAAAAACGGAATTTAATTTCCTTGAATTGCAGATTATTGTTGGTCGACTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U334578" ref_strand="+" ref_description="SGN-U334578        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>cggattctatggtggagctggactggggaaccaactgccacctgaatttggatcaccacctattttttggtagaagcatgttctaacaaagcgaaataaagactagttcattcttttggtatcctgctaattggtctctttgactgctcgaatttaaaatattacatagtctcaatggtgtaacttgcattgttttatacttgccatattttccactctggattctgccaaattgctactttcattatggtcatgctgaggtggaagtgaaatcaaagcagttgtggaggaaacttgttaagtggcgggactgggatattaaattaagttctttctggaaattttgcagatctccatcaaggtccagatcaccagcaccagctgtaagtcaaatctacatgttttaaagtgaacggaataacccaaaattcaaatatattgggatcatccgtcttgtctgtcttttttttgtgcttacctggccttttcaaagtacattctctcttttctctgtctacataattattgctttgtattatgactgggttaattacagcgttcaaaacaattaagtgaaagtcccaaaagacgcactcccagcagtagccccaaaagacgcactccaagcagaagcccaagccggagtaggagccgtagccaaagtttgtccaggtcttacttctgtggcttgtcgtatatctttcaatgttgaccgtttcgttaattttttctcctcgcctctttttataggtaagattgctggaatcatcagcgattgagggtgccatcatgctgtgtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="63724" stop="62323"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63424" g_stop="62623" g_length="802"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="801" r_length="801" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-U334578" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>802</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U334578" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63424" e_stop="62623"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGATTCTATGGTGGAGCTGGACTGGGGAACCAACTGCCACCTGAATTTGGATCACCACCTATTTTTTGGTAGAAGCATGTTCTAACAAAGCGAAATAAAGACTAGTTCATTCTTTTGGTATCCTGCTAATTGGTCTCTTTGACTGCTCGAATTTAAAATATTACATAGTCTCAATGGTGTAACTTGCATTGTTTTATACTTGCCATATTTTCCACTCTGGATTCTGCCAAATTGCTACTTTCATTATGGTCATGCTGAGGTGGAAGTGAAATCAAAGCAGTTGTGGAGGAAACTTGTTAAGTGGCGGGACTGGGATATTAAATTAAGTTCTTTCTGGAAATTTTGCAGATCTCCATCAAGGTCCAGATCACCAGCACCAGCTGTAAGTCAAATCTACATGTTTTAAAGTGAACGGAATAACCCAAAATTCAAATATATTGGGATCATCCGTCTTGTCTGTCTTTTTTTTGTGCTTACCTGGCCTTTTCAAAGTACATTCTCTCTTTTCTCTGTCTACATAATTATTGCTTTGTATTATGACTGGGTTAATTACAGCGTTCAAAACAATTAAGTGAAAGTCCCAAAAGACGCACTCCCAGCAGTAGCCCCAAAAGACGCACTCCAAGCAGAAGCCCAAGCCGGAGTAGGAGCCGTAGCCAAAGTTTGTCCAGGTCTTACTTCTGTGGCTTGTCGTATATCTTTCAATGTTTGACCGTTTCGTTAATTTTTTCTCCTCGCCTCTTTTTATAGGTAAGATTGCTGGAATCATCAGTGATTGAGGGTGCCATCATGCTGTGTTTG</genome_strand>
        <mrna_strand>CGGATTCTATGGTGGAGCTGGACTGGGGAACCAACTGCCACCTGAATTTGGATCACCACCTATTTTTTGGTAGAAGCATGTTCTAACAAAGCGAAATAAAGACTAGTTCATTCTTTTGGTATCCTGCTAATTGGTCTCTTTGACTGCTCGAATTTAAAATATTACATAGTCTCAATGGTGTAACTTGCATTGTTTTATACTTGCCATATTTTCCACTCTGGATTCTGCCAAATTGCTACTTTCATTATGGTCATGCTGAGGTGGAAGTGAAATCAAAGCAGTTGTGGAGGAAACTTGTTAAGTGGCGGGACTGGGATATTAAATTAAGTTCTTTCTGGAAATTTTGCAGATCTCCATCAAGGTCCAGATCACCAGCACCAGCTGTAAGTCAAATCTACATGTTTTAAAGTGAACGGAATAACCCAAAATTCAAATATATTGGGATCATCCGTCTTGTCTGTCTTTTTTTTGTGCTTACCTGGCCTTTTCAAAGTACATTCTCTCTTTTCTCTGTCTACATAATTATTGCTTTGTATTATGACTGGGTTAATTACAGCGTTCAAAACAATTAAGTGAAAGTCCCAAAAGACGCACTCCCAGCAGTAGCCCCAAAAGACGCACTCCAAGCAGAAGCCCAAGCCGGAGTAGGAGCCGTAGCCAAAGTTTGTCCAGGTCTTACTTCTGTGGCTTGTCGTATATCTTTCAATG-TTGACCGTTTCGTTAATTTTTTCTCCTCGCCTCTTTTTATAGGTAAGATTGCTGGAATCATCAGCGATTGAGGGTGCCATCATGCTGTGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U329875" ref_strand="+" ref_description="SGN-U329875        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | complex 1 family protein / LVR family protein, contains Pfam PF05347: Complex 1 protein (LYR family) | chr3:23238683-23239341 FORWARD | Aliases: F26K9.240(evalue: 5e-30, score=128) genbank/nr: gi|18412508|ref|NP_567133.1| expressed protein [Arabidopsis thaliana] gi|11283537|pir||T48070 hypothetical protein F26K9.240 - Arabidopsis thaliana gi|7362761|emb|CAB83131.1| hypothetical protein [Arabidopsis thaliana] gi|21554092|gb|AAM63173.1| unknown [Arabidopsis thaliana] gi|28466831|gb|AAO44024.1| At3g62810 [Arabidopsis thaliana](evalue: 3e-28, score=128)">
      <seq>ggatctacctctgacgtattttttttaaaaatagatggtatacataaaaagatcaaaataaaatagtccaaccccaaagaccattttgatcagtaaaaaatggcgagtggaagagcagtagaagcccttcgagcttacagatcagtgttgaaggccactcataaagccttcgccggagatactttcatgctccaacaatccgccgccgaggtcagaaagaaattcgaggagaatcgccacgtctcatcggaggctgatattcagaggctattggaggatgcaactgaggcctcttcgttcatatctactatgattatccaagccaaagctacaccttccggtgcttttgtggtaaagcctgagaaagaacatgctggagcaacgctcgagattccttctgaagagattcttaagaagtcagcttaagcatattcaaggaagctcagagcatttagactgctgtgttagcactttaatctttcataaactgtgagtttttcttgtgagtttctccacttggaattttctcagaggttctgctttctccaaggtcatcgcgtttcagtctttcctgtttttgttacatttaggccataattagtggatactgcatccatctatctacatctttctcctttgtgtagctacaatcaccttacaaagcaagcaggtgcagctttgcttaaacatggctattgtgataaatgattaaaaggttagttggaccaaatgtgccactaaatagagtttaaattttatttattgacggtgtaaaatatttgcacaagtgtaattttccttgctccaatagggcatgatccccttttgcaccaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="+" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="70082" stop="74305"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70381" g_stop="70730" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="349" r_length="349" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70731" i_stop="73518" i_length="2788">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73519" g_stop="74005" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="836" r_length="487" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="+" ref_id="SGN-U329875" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>837</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U329875" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70381" e_stop="70730"/>
          <exon e_start="73519" e_stop="74005"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATCTACCTCTGAAGTATTTTTTTTAAAAAATAGATGGTATACATAAAAAGATCAAAATAAAATAGTCCAACCCCAAAGACCATTTTGATCAGTAAAAAATGGCGAGTGGAAGAGCAGTAGAAGCCCTTCGAGCTTACAGATCAGTGTTGAAGGCCACTCATAAAGCCTTCGCCGGAGATACTTTCATGCTCCAACAATCCGCCGCCGAGGTCAGAAAGAAATTCGAGGAGAATCGCCACGTCTCATCGGAGGCTGATATTCAGAGGCTATTGGAGGATGCAACTGAGGCCTCTTCGTTCATATCTACTATGATTATCCAAGCCAAAGCTACACCTTCCGGTGCTTTTGGTATAACCCCTCAAATCTCCATATTATTGCGTTTATTCAATGTTATTTGTAATTTTTTTGATATTATGTTTGCGCACACCAGGTGTTTGTTTTATTGCTTCGAAGACATTTCTTTTTCCTTCATGAAAATCAATTCAGATTGATGTGAAACTTTTTGTTGCTGCAAAATGAATGTTTCATGATGACATTTTTAACAAGATAAAAATTACATACTAGAGCTTAGTTCAATAACTTGATGTAATACTGGATGTGGTTATGTTATTTGTTAGAGGTCAGGTCAGTGTGTTCCTAGGTTGGTGCAATAGCTAACGACTTTCCCAAACCTTTGAACTGCAAAATTGTTAAAGAACAAGTTCAAACAAATAGTTATTGCATTCAGCATCTTACTTTGAATGGTGCTATCTTTTTGTTTCATTTTTTTTGTGTGTGGTTTTTTAGCTTAGACCAAATACTAACTATATTGGGGACTTGTGACTTGAATTACCTTGATAACTGCCATAATAACATTTAGTGAAAGAATGTTGCTGTTGAGCTGTTGCTGGACCAGCTTGAGTGAAATCTCCGATCTTTGTAACGGTGTCTAGTCTATAATGCGTAAACATTGAGTTGGGCAGGTACTCTCTCTGTTAGTAGTGCCTACTACCTATGTACTCTCTCCGAAGTTTTAGTGCCTGTGCAGTCTCTGATGCTTTTAAATTTTTAGCAGAGCACCAGTTATTTGGCACCAAGACACTTAACATTTAGAGTATGCTAATTTTATTTAAGATCTTCTCTGCATAGCACCTTCAAAAGGTATTTCATTAGATATATCCACTAGTAAATACATGATATTGGAAGTGTGTTGTCTACTTCTCACTGAGACACATCTCTTTGAAATTGCCTGATTGGTGATTGACAATTGGCAGTTACAAACTTCCAAATATTACTTTTGTCAACTTGTGGTTAAGTCAAAATACCATAAATTTGGAGGCTCTTATTCTAAAGAGCCGTGGAAACTATTCAATCTCATAAATTTAAAACTCAATCATTGTTGATTACCCTTGCAACATCTAACATCTTCTTCACTGATCAAAAAACAATAAAACTCATTCATCATGTCTTGTGAGTGTTGTTGCCTAAATCCATTAGGAATCTAGTCACGTCAAGTAACATACTGAAGAGTAGTGATTCATTCACTTTATTTCCGTCTACCATGCAAATTTCTCAAGTTTGCAACAGTTATCAGCTTACAATAATTGAAAGTATGTTCTGTAGAGAGAATGATCAAACCGGTCCTTAATCTGTAGGGGTTGGACTGACAGAAATAGTCCTTAGTGTATATTAAAATATGTATAGTTTTGGTCTCATACCCTAAAACTATGGTTCCTCCTCATATTCTGTTTAAACAAATGGATTTCAAAGCACAAGATTCCAAGTTCCAATATCAAAAATTGAAGCTCAGACACTACATTTTTCATGGACAAAGTTCAATTTTCATGGCTGCAAAATCACTGTTTGTATGCATAGAGAGAGGAACAAATGCAGGTCATCCGGGGATTTGCTCAGTGCCCAAGTTTGTTACTTGAAGAAGATTGAAAGAAACTGATCGGAAGGTTATCATATTTCCCAAGGCTGATTCTGGATAACCATCCTCATCCTGTTGTTGTCCTACTTTGGAACTGAAGGTTCCTCATTCCAAATTTTCTGCTCCCATGTTGAGCATTTTTTCTCCTATTTGATGGCTCGAAAGTTTCTCTAGCTTTCATCATCATTCCCCCTTCCTGTTGATTCTACGTAGTAGGGTTTAATCAGTTATTCACAATTGTCAAATTGGAAGTGCACAGGAGACAAATTTCACCTACAGATGCATTTTTCTTTTTCATTCTAGTTCTGGATTTTTCCTCACCCAATTATTCTTGTATTCATGCATACAAAAAATTATCTTCCCCATTCGGTTCTTGGTATTTGGATATACTATGTTTGTGAAAATCACTAGGAAGTTACTTTAACGGAGGTTGGTTCTTGTTCAGACATAATTCAACTTTAACAGTTAGCTTTCAATATTTGTACTATTATAATTGTCCTCCTTTTCAGATGACTTATTTGATTGCTGATAAATGCTAAATATACAGCATACAGACATTATTAAGTACTTCACCATGCCTTCGTTGTGTTATTCAAAATTGTGCAATCAAATGGTCTATGTAAAAAATTAAAGTAAAAGAAGCTATATTTTTGCCAAGCTTAGTGAAATGTAGAAGAGCGAGGGGTGCATGGGAGGATGCAGTTCAAAGGTAACGGATTCACCTGAATCTGCTACTTCTCTTAAGGTTAAACCCATAAAGGAAAGATCCTACATCCACCTCTGGAGGGGTGATGCTTTAAACAATGTGTGAGGTGTCTAGAGGAAGAAGAACATAAGGAAATCAGAAAAGTGAAGGAAGCACTGGCATACACAAGTAAAGAAAGAAGAAATAGACTTTGTGGAACTCACGAATCACAATAAAGCTAGAAGTACTACTATCAAATTGAATTACACCATTAATTTTAACAGTATTTTTGTTTTGTACCATTAGTTTTTCGACATGAGATAAAAGATGTCCAGCTTTGACATACATTAAGGACCATTTCCTTTAAGTGGGGTATATATGATTGACCAAAACTGTTAACCCCCTAACATTAAAGGATCATTTTGATAGTTTTCTCCTGTTCTTTATCTGCTAAGTTTCCTGATGCTCTTTCGGTCTTTCCTTGCATTGATTCAATTCTGCTGCCTTTTTGACAAATATTTGAATGTTATTTGCTGCAGTGGTAAAGCCTGAGAAAGAACATGCTGGAGCAACGCTCGAGATTCCTTCTGAAGAGATTCTTAAGAAGTCAGCTTAAGCATATTCAAGGAAGCTCAGAGCATTTAGACTGCTGTGTTAGCACTTTAATCTTTCATAAACTGTGAGTTTTTCTTGTGAGTTTCTCCACTTGGAATTTTCTCAGAGGTTCTGCTTTCTCCAAGGTCATCGCGTTTCAGTCTTTCCTGTTTTTGTTACATTTAGGCCATAATTAGTGGATACTGCATCCATCTATCTACATCTTTCTCCTTTGTGTAGCTACAATCACCTTACAAAGCAAGCAGGTGCAGCTTTGCTTAAACATGGCTATTGTGATAAATGATTAAAAGGTTAGTTGGACCAAATGTGCCACTAAATAGAGTTTAAATTTTATTTATTGACGGTGTAAAATATTTGCACAAGTGTAATTTTCCTTGCTCCAATAGGGCATGATCCCCTTTTGCACCAACT</genome_strand>
        <mrna_strand>GGATCTACCTCTGACGTATTTTTTTT-AAAAATAGATGGTATACATAAAAAGATCAAAATAAAATAGTCCAACCCCAAAGACCATTTTGATCAGTAAAAAATGGCGAGTGGAAGAGCAGTAGAAGCCCTTCGAGCTTACAGATCAGTGTTGAAGGCCACTCATAAAGCCTTCGCCGGAGATACTTTCATGCTCCAACAATCCGCCGCCGAGGTCAGAAAGAAATTCGAGGAGAATCGCCACGTCTCATCGGAGGCTGATATTCAGAGGCTATTGGAGGATGCAACTGAGGCCTCTTCGTTCATATCTACTATGATTATCCAAGCCAAAGCTACACCTTCCGGTGCTTTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTAAAGCCTGAGAAAGAACATGCTGGAGCAACGCTCGAGATTCCTTCTGAAGAGATTCTTAAGAAGTCAGCTTAAGCATATTCAAGGAAGCTCAGAGCATTTAGACTGCTGTGTTAGCACTTTAATCTTTCATAAACTGTGAGTTTTTCTTGTGAGTTTCTCCACTTGGAATTTTCTCAGAGGTTCTGCTTTCTCCAAGGTCATCGCGTTTCAGTCTTTCCTGTTTTTGTTACATTTAGGCCATAATTAGTGGATACTGCATCCATCTATCTACATCTTTCTCCTTTGTGTAGCTACAATCACCTTACAAAGCAAGCAGGTGCAGCTTTGCTTAAACATGGCTATTGTGATAAATGATTAAAAGGTTAGTTGGACCAAATGTGCCACTAAATAGAGTTTAAATTTTATTTATTGACGGTGTAAAATATTTGCACAAGTGTAATTTTCCTTGCTCCAATAGGGCATGATCCCCTTTTGCACCAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U339413" ref_strand="-" ref_description="SGN-U339413        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>caagccaaagctacaccttccggggcttttgtggtaaagcctgggaaagaacatgttggagcaacgctcgagattctttttgaagcccccccccccccgtcagtttaagcatattcaaggaagttcagagcatttagactggtgtgttagcactttaatttttcataaactgggagttttttttgtgagtttttccacttggaattttttcagaggttttgctttttccaaggtcatcgggtttcagtttttcctgtttttgttacatttaggccataattagtggatactgcatccatttatttacatttttttcctttgggtagctacaatccccttacaaagcaagcaggggcagctttgcttaaacatggtttttgtgataaatgattaaaaggttagttggaccaaatgtgccactaaatagagtttaaattttatttattgacggtgtaaaatatttgcacaagtgtaattttccttgttccaatagggcatgatccccttttgccccaacttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="+" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="70400" stop="74307"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70700" g_stop="70730" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70731" i_stop="73518" i_length="2788">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73519" g_stop="74015" g_length="497"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="528" r_length="497" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="529" polyA_stop="564"/>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="+" ref_id="SGN-U339413" ref_strand="-">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U339413" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="70700" e_stop="70730"/>
          <exon e_start="73519" e_stop="74015"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGCCAAAGCTACACCTTCCGGTGCTTTTGGTATAACCCCTCAAATCTCCATATTATTGCGTTTATTCAATGTTATTTGTAATTTTTTTGATATTATGTTTGCGCACACCAGGTGTTTGTTTTATTGCTTCGAAGACATTTCTTTTTCCTTCATGAAAATCAATTCAGATTGATGTGAAACTTTTTGTTGCTGCAAAATGAATGTTTCATGATGACATTTTTAACAAGATAAAAATTACATACTAGAGCTTAGTTCAATAACTTGATGTAATACTGGATGTGGTTATGTTATTTGTTAGAGGTCAGGTCAGTGTGTTCCTAGGTTGGTGCAATAGCTAACGACTTTCCCAAACCTTTGAACTGCAAAATTGTTAAAGAACAAGTTCAAACAAATAGTTATTGCATTCAGCATCTTACTTTGAATGGTGCTATCTTTTTGTTTCATTTTTTTTGTGTGTGGTTTTTTAGCTTAGACCAAATACTAACTATATTGGGGACTTGTGACTTGAATTACCTTGATAACTGCCATAATAACATTTAGTGAAAGAATGTTGCTGTTGAGCTGTTGCTGGACCAGCTTGAGTGAAATCTCCGATCTTTGTAACGGTGTCTAGTCTATAATGCGTAAACATTGAGTTGGGCAGGTACTCTCTCTGTTAGTAGTGCCTACTACCTATGTACTCTCTCCGAAGTTTTAGTGCCTGTGCAGTCTCTGATGCTTTTAAATTTTTAGCAGAGCACCAGTTATTTGGCACCAAGACACTTAACATTTAGAGTATGCTAATTTTATTTAAGATCTTCTCTGCATAGCACCTTCAAAAGGTATTTCATTAGATATATCCACTAGTAAATACATGATATTGGAAGTGTGTTGTCTACTTCTCACTGAGACACATCTCTTTGAAATTGCCTGATTGGTGATTGACAATTGGCAGTTACAAACTTCCAAATATTACTTTTGTCAACTTGTGGTTAAGTCAAAATACCATAAATTTGGAGGCTCTTATTCTAAAGAGCCGTGGAAACTATTCAATCTCATAAATTTAAAACTCAATCATTGTTGATTACCCTTGCAACATCTAACATCTTCTTCACTGATCAAAAAACAATAAAACTCATTCATCATGTCTTGTGAGTGTTGTTGCCTAAATCCATTAGGAATCTAGTCACGTCAAGTAACATACTGAAGAGTAGTGATTCATTCACTTTATTTCCGTCTACCATGCAAATTTCTCAAGTTTGCAACAGTTATCAGCTTACAATAATTGAAAGTATGTTCTGTAGAGAGAATGATCAAACCGGTCCTTAATCTGTAGGGGTTGGACTGACAGAAATAGTCCTTAGTGTATATTAAAATATGTATAGTTTTGGTCTCATACCCTAAAACTATGGTTCCTCCTCATATTCTGTTTAAACAAATGGATTTCAAAGCACAAGATTCCAAGTTCCAATATCAAAAATTGAAGCTCAGACACTACATTTTTCATGGACAAAGTTCAATTTTCATGGCTGCAAAATCACTGTTTGTATGCATAGAGAGAGGAACAAATGCAGGTCATCCGGGGATTTGCTCAGTGCCCAAGTTTGTTACTTGAAGAAGATTGAAAGAAACTGATCGGAAGGTTATCATATTTCCCAAGGCTGATTCTGGATAACCATCCTCATCCTGTTGTTGTCCTACTTTGGAACTGAAGGTTCCTCATTCCAAATTTTCTGCTCCCATGTTGAGCATTTTTTCTCCTATTTGATGGCTCGAAAGTTTCTCTAGCTTTCATCATCATTCCCCCTTCCTGTTGATTCTACGTAGTAGGGTTTAATCAGTTATTCACAATTGTCAAATTGGAAGTGCACAGGAGACAAATTTCACCTACAGATGCATTTTTCTTTTTCATTCTAGTTCTGGATTTTTCCTCACCCAATTATTCTTGTATTCATGCATACAAAAAATTATCTTCCCCATTCGGTTCTTGGTATTTGGATATACTATGTTTGTGAAAATCACTAGGAAGTTACTTTAACGGAGGTTGGTTCTTGTTCAGACATAATTCAACTTTAACAGTTAGCTTTCAATATTTGTACTATTATAATTGTCCTCCTTTTCAGATGACTTATTTGATTGCTGATAAATGCTAAATATACAGCATACAGACATTATTAAGTACTTCACCATGCCTTCGTTGTGTTATTCAAAATTGTGCAATCAAATGGTCTATGTAAAAAATTAAAGTAAAAGAAGCTATATTTTTGCCAAGCTTAGTGAAATGTAGAAGAGCGAGGGGTGCATGGGAGGATGCAGTTCAAAGGTAACGGATTCACCTGAATCTGCTACTTCTCTTAAGGTTAAACCCATAAAGGAAAGATCCTACATCCACCTCTGGAGGGGTGATGCTTTAAACAATGTGTGAGGTGTCTAGAGGAAGAAGAACATAAGGAAATCAGAAAAGTGAAGGAAGCACTGGCATACACAAGTAAAGAAAGAAGAAATAGACTTTGTGGAACTCACGAATCACAATAAAGCTAGAAGTACTACTATCAAATTGAATTACACCATTAATTTTAACAGTATTTTTGTTTTGTACCATTAGTTTTTCGACATGAGATAAAAGATGTCCAGCTTTGACATACATTAAGGACCATTTCCTTTAAGTGGGGTATATATGATTGACCAAAACTGTTAACCCCCTAACATTAAAGGATCATTTTGATAGTTTTCTCCTGTTCTTTATCTGCTAAGTTTCCTGATGCTCTTTCGGTCTTTCCTTGCATTGATTCAATTCTGCTGCCTTTTTGACAAATATTTGAATGTTATTTGCTGCAGTGGTAAAGCCTGAGAAAGAACATGCTGGAGCAACGCTCGAGATTCCTTCTGAAGAGATTCTTAAGAAGTCAGCTTAAGCATATTCAAGGAAGCTCAGAGCATTTAGACTGCTGTGTTAGCACTTTAATCTTTCATAAACTGTGAGTTTTTCTTGTGAGTTTCTCCACTTGGAATTTTCTCAGAGGTTCTGCTTTCTCCAAGGTCATCGCGTTTCAGTCTTTCCTGTTTTTGTTACATTTAGGCCATAATTAGTGGATACTGCATCCATCTATCTACATCTTTCTCCTTTGTGTAGCTACAATCACCTTACAAAGCAAGCAGGTGCAGCTTTGCTTAAACATGGCTATTGTGATAAATGATTAAAAGGTTAGTTGGACCAAATGTGCCACTAAATAGAGTTTAAATTTTATTTATTGACGGTGTAAAATATTTGCACAAGTGTAATTTTCCTTGCTCCAATAGGGCATGATCCCCTTTTGCACCAACTAATGCACAAT</genome_strand>
        <mrna_strand>CAAGCCAAAGCTACACCTTCCGGGGCTTTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTAAAGCCTGGGAAAGAACATGTTGGAGCAACGCTCGAGATTCTTTTTGAAGCCCCCCCCCCCCCGTCAGTTTAAGCATATTCAAGGAAGTTCAGAGCATTTAGACTGGTGTGTTAGCACTTTAATTTTTCATAAACTGGGAGTTTTTTTTGTGAGTTTTTCCACTTGGAATTTTTTCAGAGGTTTTGCTTTTTCCAAGGTCATCGGGTTTCAGTTTTTCCTGTTTTTGTTACATTTAGGCCATAATTAGTGGATACTGCATCCATTTATTTACATTTTTTTCCTTTGGGTAGCTACAATCCCCTTACAAAGCAAGCAGGGGCAGCTTTGCTTAAACATGGTTTTTGTGATAAATGATTAAAAGGTTAGTTGGACCAAATGTGCCACTAAATAGAGTTTAAATTTTATTTATTGACGGTGTAAAATATTTGCACAAGTGTAATTTTCCTTGTTCCAATAGGGCATGATCCCCTTTTGCCCCAACTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317504" ref_strand="+" ref_description="SGN-U317504        Tomato 200607 #1 [21 ESTs aligned] arabidopsis/peptide: | Symbol: AUD1 | NAD-dependent epimerase/dehydratase family protein, similar to UDP-glucuronic acid decarboxylase Uxs1p from Filobasidiella neoformans GI:14318327; contains Pfam profile PF01370 NAD dependent epimerase/dehydratase family; contains non-consensus CA donor splice site at exon 1 and TA acceptor splice site at exon 2 | chr3:23243514-23246328 FORWARD | Aliases: F26K9.260, AUD1(evalue: 0, score=699) genbank/nr: gi|48093465|gb|AAT40109.1| putative UDP-glucuronate decarboxylase 3 [Nicotiana tabacum] (evalue: 0, score=762)">
      <seq>cttttctctctctttttcaacacgattttgagagaagaaaaataaataaatcatgacttccgaattgatttatcgaggaccggaatcagttccggtgaccgacggttacactcccaaaccacataaaccatggtttactgtaattcgtccccttcgttacttgctccgagaacagagaattgtttttctattcgcaggcattgctatcgcttctctaatttttgcttttttaccgtcttctcgttcctccggaggatcgagctacgctaacaccgggatctacgattcgtacttaccgtcggagtcgactgagtctcaggtggctcaccggatgatctatcataatcgggtcgggttcgggtcgattaattccggtgggaagatcccgttgggattaaagcggaaggttttgaggattgtggtgactggtggtgctggttttgttggtagtcatttagtggatcgtttgattgcgagaggtgatagtgtgatcgtcgttgataatttcttcaccggacggaaagagaacgttatgcatcattttggtaaccctaggtttgagcttattagacatgatgttgttgagccacttttgcttgaagttgaccagatctatcatctcgcttgccctgcttctcccgttcattacaagcataatcccgtcaaaactatcaagactaatgtagttggtactttgaacatgctgggattggctaaaagagtcggtgcgaggtttttgctaaccagcactagcgaagtatatggtgatcctttagaacatccacagaaggagacatactggggcaatgttaatcctattggtgtccgaagttgctacgatgagggaaaacgaacagctgaaacattgacaatggattatcacagaggtgcagaagttgaggtgagaatcgctaggatctttaacacttatggacctcgtatgtgtattgatgacggtcgcgttgtcagcaactttgtcgctcaggctttaaggaaagagcctttgacagtttatggtgatgggaaacaaacaagaagtttccaatttgtttcagatctggttgaaggcttaatgcggttgatggaaggagaacatgtcggacccttcaacctcggaaaccctggtgaattcacaatgcttgaacttgctaaggtggtccaggaaaccattgacccaaatgcacagattgtacacaaaccaaacacagaagatgacccacacaagcgaaaacctgatatctcaaaggctaaagagttacttggttgggaaccgaaagtggctcttagaaatggtttgcctatgatggttcaagacttcaggcaacgtattttcggtgatcacaaagaagaaagtgcaaagatcaccacagcttaatagaaaagaaaagtgtgttatgtttggatatttgttaaacttggtaaggggtgaaacgcacgcgaagaaaagacgactctcttgtgttgatgttagtttcaagcagaagtgcaggcagcagaagactgagctgagctccccatgtacttcttttgaatagttggttctttgtcaattttgcaattctattattagtattattatccttttgttaacagttgatgtagtagaccaactttcattattctcataagaataaaactggtacgtattttccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="+" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="85979" stop="91230"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86279" g_stop="86951" g_length="673"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="673" r_length="673" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86952" i_stop="87054" i_length="103">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87055" g_stop="87202" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="674" r_stop="821" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87203" i_stop="88663" i_length="1461">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88664" g_stop="88743" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="822" r_stop="901" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88744" i_stop="89296" i_length="553">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89297" g_stop="89380" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="902" r_stop="985" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89381" i_stop="89464" i_length="84">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="89465" g_stop="89539" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="986" r_stop="1060" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="89540" i_stop="90044" i_length="505">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="90045" g_stop="90137" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1061" r_stop="1153" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="90138" i_stop="90430" i_length="293">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="90431" g_stop="90930" g_length="500"/>
          <reference_exon_boundary r_type="cDNA" r_start="1154" r_stop="1653" r_length="500" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="+" ref_id="SGN-U317504" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1653</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U317504" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86279" e_stop="86951"/>
          <exon e_start="87055" e_stop="87202"/>
          <exon e_start="88664" e_stop="88743"/>
          <exon e_start="89297" e_stop="89380"/>
          <exon e_start="89465" e_stop="89539"/>
          <exon e_start="90045" e_stop="90137"/>
          <exon e_start="90431" e_stop="90930"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTCTCTCTCTTTTTCAACACAATTTTGAGAGAAGAAAAATAAATAAATCATGACTTCCGAATTGATTTATCGTGGACCGGAATCAGTTCCGGTGACCGACGGTTACACTCCCAAACCACATAAACCATGGTTTACTGTAATTCGTCCCCTTCGTTACTTGCTCCGAGAACAGAGAATTGTTTTTCTATTCGCAGGCATTGCTATCGCTTCTCTAATTTTTGCTTTTTTACCGTCTTCTCGTTCCTCCGGAGGATCGAGCTACGCTAACACCGGGATCTACGATTCGTACTTACCGTCGGAGTCGACTGAGTCTCAGGTGGCTCACCGGATGATCTATCATAATCGGGTCGGGTTCGGGTCGATTAATTCCGGTGGGAAGATCCCGTTGGGATTAAAGCGGAAGGTTTTGAGGATTGTGGTGACTGGTGGTGCTGGTTTTGTTGGTAGTCATTTAGTGGATCGTTTGATTGCGAGAGGTGATAGTGTGATCGTCGTTGATAATTTCTTCACCGGACGGAAAGAGAACGTTATGCATCATTTTGGTAACCCTAGGTTTGAGCTTATTAGACATGATGTTGTTGAGCCACTTTTGCTTGAAGTTGACCAGATCTATCATCTCGCTTGCCCTGCTTCTCCCGTTCATTACAAGCATAATCCCGTCAAAACTATCATATCCTTCTTTTTTAAAAATTATCATTAATTTTAATTACGTGCATAAAATTATATTAAATATATTATTATCATCGTTTCATCCTTGACGGATTAATTTTTACAAGACTAATGTAGTTGGTACTTTGAACATGCTGGGATTGGCTAAAAGAGTCGGTGCGAGGTTTTTGCTAACCAGCACTAGCGAAGTATATGGTGATCCTTTAGAACATCCACAGAAGGAGACATACTGGGGCAATGTTAATCCTATTGGTAAGATTTTTTAATTTCTTTTTCTATTTTCTATTTTAGTTATTTTCTTTTTAAAAAAATTCTTCAAAATCTCTTAATTTTAATTTTCACATTATATATTTTATTAAAATGCACGAATAAATTGAAACGAAAGAATTACGATGCACGTTAGCTATGGTCTTTTGATGGTTCATGGTAAAAATGTGGAGCCACGTGTTGAACGATGATGAGTGCTAATGACGTTTCTGTCCTTAGATCGGGTCGGGAAAATTATTTTAATTTAATTTTTTTTTGTCAACGATGATACCGTGATTTGCGGGTCCGGCCGCTTCATTCACCTATCTTTATGTCTTTCATTTTAATTCAATTGGCGCGCCCTTTTCTATTCAATCTTTTCTCTCTTTTATTTTGTCCTTGAAAAATTAAATTAGCTTAAGTAATTACTTTCTTGTCTTTTTCTTTTTTTCCTTTTATTTCCTTTTGAGTCTTTTGATATTTCACGTTTCGATTTGTTTGTTTAATTTTTTATTTTGTTTTAAAAAAAAGTTATGCCATGTTTAAGATAATAAAGATATAAAAATATTTTAGTATATTTCACTTCTTTCGTACGATAATAATAGTTGTTCACTATGTTATTTTGGAATGTTCAATAATATTTTTTCGTTTTATCAAATAATAGATAATTTTTGAATGACCTAGTTTGACTTGGAACGGAGTTTAAAAAAATAAAACAGACATTTTAAACTTGTGATTCTAAATTAAAGTTATGTCTAATGTACAAAAATGTCATTCATGCCACGTGGAAAGTTAAAGTGAAATTGTTGCCAAAAAAGCAAAGAGATTATTCTTTTGAATCAGACTAAAAAGGAAACAATGTTATTCTTTTTGAAACGGATGGAATATTTATTATATTCAAAGGGTGATACAGTAAAATTATTTTTTTATTTATATTTTCTATAGTAGACAAGTATTATTGTACATATTTTGATTTAAGATCATATAATTTAAAAAAATTGCTTTGTTTTGGTAGACTCGGTATTAGTCAAAATATGAAAAATAAATTGACAAAACGGAGGAAGTTACCATGACTATAATATTATCAATGTGATTCCACAAATGGAGTCTGTTGAACTCTTCCTTTACATGAAGGGAATGAATGCCTTAATGGAATGGAATCCGGGATCCAAGTAGATTAGGTTAAGGCAAGTATGAGTAGAGACTCTTTTCGATAACTTTGAAAAGCTTTATAACAACAACCAGTGAAAGAAATATAATAGTGAAACAAATTGTGTTTGTTTAACTACGAAGAAAGAGAAATAAATATAGTTGGACAGGTAGTAGTTGAATTATTATTGAATTTGTATAGAATATTAGATCTGAAATGTAACTTTAGTTTCCCGCAGACTAAGGAAGATGGTCTGTTTTGCCTTTTGTCTATTTTAATGTAAATGGTGGGGTTAACTGACCAAGAAAGTAAAACAGGTGTCCGAAGTTGCTACGATGAGGGAAAACGAACAGCTGAAACATTGACAATGGATTATCACAGAGGTGCAGAAGTTGAGGTTTGTGTTTTTTTTTTAACCCATAGTCCAGATTAATGTTTACTGTACTTGTTGATAATGTAGACTTCATAGATACTGTAATTGTAACTCCTCTAGTACTACATTCTCAAGAAATATAGGACATTTGTCACCTAACGGTGTGGCCTACTGGTCAATGAAGCAGGATGAGAACCATGAGTTCTCGAGTTTAAATTCCAAGAGATACAAAAACACAAGTGATATCTTACCATTTGTTCACTACGTGACACATGTTGTTGGTGTGAGGTGACAGGTTTCTTGTGTAATTAGTCGAGGTGCGAGGAAAAATAAAATTAACAATCACTCTGGAGCCAACTGTTTTATTCCTTATTGCGCATGTACTTGATCATCGATAAATGTACTTTGTATCTAGTGTTTTTAAATAATGTACTATCGGTGTAGTTTAATCTATGATAGCAAGTTAGCTACCGTTTTTATCAGGTTACTAATTACTGTTTATCATAGATATGTATCTGAAATTACCTGTTAAGTAATTTGCTGGTAAAATTGTGTCGATGTACCTATGTTGTTACAGGTGAGAATCGCTAGGATCTTTAACACTTATGGACCTCGTATGTGTATTGATGACGGTCGCGTTGTCAGCAACTTTGTCGCTCAGGTGACTCCATTATTTAAATATAAACGTAAAGTTAATGGATTCTTAAACTAAGCAACAAAAAGCTTATATAAAATTTGTTTACAGGCTTTAAGGAAAGAGCCTTTGACAGTTTATGGTGATGGGAAACAAACAAGAAGTTTCCAATTTGTTTCAGATCTGGTACTTTTCTCTCTGTTCTTCGTTTTTTTTTTAGCTTTTTTAATACGTTACCTTATTAGTTTTATATGCATTCTTTCGAAGTGGCTTTCAAATGTAAGATTCTTTAATAATTTGACTTGCCATCTAGCTTACAGTTTACAACATGATTAGAAAATAAATAAATTAATATCTAAAGTAGGGTCCCCCTACTCTGTTGCAAGGTAAAATATTGTAGTGTGGAAGCACATGCCATGTCTAAGTAGAAGCCAGATACCTGGGACCCGTATTTTTATTTCTATGTACTCCTTCTGTCTCAATTTACGAGATGTAGTTTTGATTGGACACGGAGTTCAAGAAATATGTGTGAAGACTTTGCAATGTTCCGAAGTTATGCTTAAAAAGAGTGTACCTTTGTGGAACTTTTATCAAGCAGTAAAACAGTAATAAAAGTATAAAAACCATGGTTTGTGACCTTGATATAACATAAGAAGGAATCTAAACTTGCTTTATTTTGGTTAATGTGAAGGTTGAAGGCTTAATGCGGTTGATGGAAGGAGAACATGTCGGACCCTTCAACCTCGGAAACCCTGGTGAATTCACAATGCTTGAACTTGCTAAGGTATGTAACGACACACTTCTAAACATCCAACTTTGATGTTGTGTTTCTTTTGCATTAGCATTTTACATTGTCGTCAAGCTACAAAATCAGATTTCCGAGGAAAGGATAGAATGTACACCGATAAAATCAGTTTCATACGGCAATCATTTTCAGTCTTAAATCTAAGTTAGAAGTGTCTGAGCTTCATCATATGCACAGCTTCAGACATATGTCAAGTATTTCCAATGTGGGCTCTGTGATACTTTTACCATTTTGTTGACACATTGCCGTCTTTAATTGAATGCTGCACACAGGTGGTCCAGGAAACCATTGACCCAAATGCACAGATTGTACACAAACCAAACACAGAAGATGACCCACACAAGCGAAAACCTGATATCTCAAAGGCTAAAGAGTTACTTGGTTGGGAACCGAAAGTGGCTCTTAGAAATGGTTTGCCTATGATGGTTCAAGACTTCAGGCAACGTATTTTCGGTGATCACAAAGAAGAAAGTGCAAAGATCACCACAGCTTAATAGAAAAGAAAAGTGTGTTATGTTTGGATATTTGTTAAACTTGGTAAGGGGTGAAACGCACGCGAAGAAAAGACGACTCTCTTGTGTTGATGTTAGTTTCAAGCAGAAGTGCAGGCAGCAGAAGACTGAGCTGAGCTCCCCATGTACTTCTTTTGAATAGTTGGTTCTTTGTCAATTTTGCAATTCTATTATTAGTATTATTATCCTTTTGTTAACAGTTGATGTAGTAGACCAACTTTCATTATTCTCATAAGAATAAAACTGGTACGTATTTTCCC</genome_strand>
        <mrna_strand>CTTTTCTCTCTCTTTTTCAACACGATTTTGAGAGAAGAAAAATAAATAAATCATGACTTCCGAATTGATTTATCGAGGACCGGAATCAGTTCCGGTGACCGACGGTTACACTCCCAAACCACATAAACCATGGTTTACTGTAATTCGTCCCCTTCGTTACTTGCTCCGAGAACAGAGAATTGTTTTTCTATTCGCAGGCATTGCTATCGCTTCTCTAATTTTTGCTTTTTTACCGTCTTCTCGTTCCTCCGGAGGATCGAGCTACGCTAACACCGGGATCTACGATTCGTACTTACCGTCGGAGTCGACTGAGTCTCAGGTGGCTCACCGGATGATCTATCATAATCGGGTCGGGTTCGGGTCGATTAATTCCGGTGGGAAGATCCCGTTGGGATTAAAGCGGAAGGTTTTGAGGATTGTGGTGACTGGTGGTGCTGGTTTTGTTGGTAGTCATTTAGTGGATCGTTTGATTGCGAGAGGTGATAGTGTGATCGTCGTTGATAATTTCTTCACCGGACGGAAAGAGAACGTTATGCATCATTTTGGTAACCCTAGGTTTGAGCTTATTAGACATGATGTTGTTGAGCCACTTTTGCTTGAAGTTGACCAGATCTATCATCTCGCTTGCCCTGCTTCTCCCGTTCATTACAAGCATAATCCCGTCAAAACTATC.......................................................................................................AAGACTAATGTAGTTGGTACTTTGAACATGCTGGGATTGGCTAAAAGAGTCGGTGCGAGGTTTTTGCTAACCAGCACTAGCGAAGTATATGGTGATCCTTTAGAACATCCACAGAAGGAGACATACTGGGGCAATGTTAATCCTATTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCCGAAGTTGCTACGATGAGGGAAAACGAACAGCTGAAACATTGACAATGGATTATCACAGAGGTGCAGAAGTTGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAATCGCTAGGATCTTTAACACTTATGGACCTCGTATGTGTATTGATGACGGTCGCGTTGTCAGCAACTTTGTCGCTCAG....................................................................................GCTTTAAGGAAAGAGCCTTTGACAGTTTATGGTGATGGGAAACAAACAAGAAGTTTCCAATTTGTTTCAGATCTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAGGCTTAATGCGGTTGATGGAAGGAGAACATGTCGGACCCTTCAACCTCGGAAACCCTGGTGAATTCACAATGCTTGAACTTGCTAAG.....................................................................................................................................................................................................................................................................................................GTGGTCCAGGAAACCATTGACCCAAATGCACAGATTGTACACAAACCAAACACAGAAGATGACCCACACAAGCGAAAACCTGATATCTCAAAGGCTAAAGAGTTACTTGGTTGGGAACCGAAAGTGGCTCTTAGAAATGGTTTGCCTATGATGGTTCAAGACTTCAGGCAACGTATTTTCGGTGATCACAAAGAAGAAAGTGCAAAGATCACCACAGCTTAATAGAAAAGAAAAGTGTGTTATGTTTGGATATTTGTTAAACTTGGTAAGGGGTGAAACGCACGCGAAGAAAAGACGACTCTCTTGTGTTGATGTTAGTTTCAAGCAGAAGTGCAGGCAGCAGAAGACTGAGCTGAGCTCCCCATGTACTTCTTTTGAATAGTTGGTTCTTTGTCAATTTTGCAATTCTATTATTAGTATTATTATCCTTTTGTTAACAGTTGATGTAGTAGACCAACTTTCATTATTCTCATAAGAATAAAACTGGTACGTATTTTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U316122" ref_strand="+" ref_description="SGN-U316122        Tomato 200607 #1 [31 ESTs aligned] arabidopsis/peptide: | Symbol: None | small nuclear ribonucleoprotein D2, putative / snRNP core protein D2, putative / Sm protein D2, putative, similar to small nuclear ribonucleoprotein Sm D2 (snRNP core protein D2) (Sm-D2) (Mus musculus) SWISS-PROT:P43330 | chr2:19544248-19545669 FORWARD | Aliases: F17A22.3(evalue: 3e-45, score=178) genbank/nr: gi|18407411|ref|NP_566107.1| small nuclear ribonucleo protein D2 -related [Arabidopsis thaliana] gi|20196966|gb|AAM14847.1| putative small nuclear ribonucleoprotein D2 [Arabidopsis thaliana] gi|20197310|gb|AAC63620.2| putative small nuclear ribonucleoprotein D2 [Arabidopsis thaliana](evalue: 2e-43, score=178)">
      <seq>cctttaccctctttaaaccctagctcctttgcccacttttttttgttgctcttcaatttcttctgcttgatcgaagatgagtcgaccaatggaagaggatgcccctcaagggaaaaatgaggaagaggagttcaatactgggccactttctgtcctcatgatgagtgttaagaataacacacaggtgctcatcaactgtaggaacaacaggaaacttcttggtcgtgtgagagcatttgatcgtcactgcaatatggtgcttgaaaatgttagagaaatgtggactgaggtgcccaagactggaaaaggaaaaaagaaagctgttgctgttaacaaagataggtttatcagcaagatgttccttcggggagattctgtgatcattgtcctccgaaatcctaagtagagaggtgaattggatttctgtgctttggagcaaaacttgtaagcagctaggatttggaccagctctgtataacctttcgtattcgggaatttggctaggcagaacaccacctttgattgctgtaagacttgatataagattttgatgttctggtatgctatatactgttgtcttcttcacaaacttattgtagacgttggagttttaacgttcttgttgtgtatgttgaatcctatgaccagctaatatgtacggtaaatgtcttgcattaactccaaaaaaaaaaaaaatccataagcgtgcgtgcttgtctatttaactatgtctagttctggcacatgcattggttggacaaatgcaatatcgagagtttgaaactgagaggcacggagatatcaagagtaaattattacccttggctgttatgctgtgcatcactaatttaattttggaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="96063" stop="91494"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95763" g_stop="95683" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95682" i_stop="94951" i_length="732">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94950" g_stop="94926" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="106" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94925" i_stop="93847" i_length="1079">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93846" g_stop="93769" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="184" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93768" i_stop="93510" i_length="259">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93509" g_stop="93405" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="289" r_length="105" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="93404" i_stop="93211" i_length="194">
            <donor d_prob="0.639" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93210" g_stop="93090" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="410" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="93089" i_stop="92243" i_length="847">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="92242" g_stop="91790" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="867" r_length="457" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="868" polyA_stop="881"/>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-U316122" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>863</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U316122" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95763" e_stop="95683"/>
          <exon e_start="94950" e_stop="94926"/>
          <exon e_start="93846" e_stop="93769"/>
          <exon e_start="93509" e_stop="93405"/>
          <exon e_start="93210" e_stop="93090"/>
          <exon e_start="92242" e_stop="91790"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTACCCTCTTTAAACCCTAGCTCCTTTGCCCACTTTTTTTTGTTGCTCTTCAATTTCTTCTGCTTGATCGAAGATGAGGTAATGGTTTACTGCTATTTTACACTTTGCCTTTGTACATTTGAAGTTCTTCAATTTTCTCTGTTTGATTTTTTCTCGTCATTGCAGTAACCTATTTAGTAGATTATGTAATGTTATTGTTAATCAAAGAAGTAGATAATTTTCCCTAGGTAAAGTAAGTTATTGGACGAGGAGATGAGAAATTGAAGAATTTTAGCTGTTTTCTGGACTAATTTTGTGTAGTTTTTTTTTTTTTTGGGTATTGCGTGCTTTTGGAAGTTTAAATTAGAGTGAGTAGATTCATATAACTGAAGGCAACTAGCTTGGCGTGAAGGCCTGGAATGTTTCTTTTTTCGAGTTCTATATGCAGTTTAAACACTATGCTAATTGGGTTTCATGTAGCTAAACAATTGTAAAGTTGGATTTTCGAGTAATTCAGTCTTCTCTAGCCCTTTATTACTACTGATCTTAGTTCTTTTTGTTCACTCTCTACTATATCCAAGCTTAAAACCTATGTTATTCCGTGCACATCAGTAATAGAACCCTTATATTGTCTAGAATACTAGGATAACAAGGCTGTAAGATGTACAAATAGAATTAAGAAAAAACTAGGTCAGTGTCTCATGTTTTTGTTGTTCATTGCTGATGTATTTCTCTATTCCTGTTGATTTTAGTGTTACCCAAATATTAGTAAGTGGAAGTTTCTAATTGTTTTGCTTTTTCTTTTTCTTTTCTATTTGTGCTCTTTTGCAGTCGACCAATGGAAGAGGATGCCCCTGTAAGTTAGCTTACTTTGCTAGTATTTTGCCCTATACAAAGCTCTCATTGTTTATTTTTCTCATTTTTTCATTGGCATAATCTGTGTTGTGATCTATTTTGTGTTTTAGGGGCTGTCTACTGCTTAGTACTTGTTTTCATTTTCCTTTCTGTTCACCTCAATGCGATGCATTCAATTAGATTTCTTTTGTTGGTAGCCTTGATCCTGCTTTACACGTTACAACTGAAAAGTTTCTAGCATACATCTTTTATTTTATCATATGGAGAATATGTTTATACCTCCCTTTTCAAAGCAAGATCATTGAATTGTTTGATCTGTAGAATATTTTTCAGCACATAACATCAAGTCATTGAATTTTTTTTGGTTAAGTCGTTTGAGTTCACCACTCAAAACAAATGACAAAATCAATTAGAACTTTAAAATAACAATGTAGCTAGGATGAATTTTTCTGTAAAAACTAGAACCTATCAAGTGTAAAAATTATTAGTTGAATTAGTAGAATTTATTTTCTACAGTTGTTTTGTTCCCACCTTCACACAAGTGTTATGTCAGTTTTTCTCATTTACCACATTGGATAACCCAGAAGCTAGGTCCGAACTTTGTAGTTCTCCCTTAACAGACATCCTATTGACATTTTTCTTATATTCTTGGTATGTTTATTTATACATGTACTCTTGTTCATTTTCCATTTGAGTTGCTTCTTGTTTGCCTTCCCGATGCCTAAAGTGCTTAGGTCTAAACTTTGTAGTTCTCCTTTAACAGACATCCTATTGACATTTCGTCTTTTATTCTTGGTATGTTTATTTATACATGTACTCTTGTTGTTCATTTTCCATTTGTGTTGCTTCTTATCTGCCTTCCCGATGTCAAAGTGCTTTGCTTCAAAGTTATCTAGATTAAGCACATAGTGAAAGAGTGTATAATTGGTAGATTATCTAGCTTAAGTACATAGTGAAAAAGTGTATGCCCTTCTATGTTGGTGTGATAGAGGAATGAACCTTATCAGTCCCAGTGAATATGATTTGCTTATCAGATTTTGTGAAAGATGTCTTATGTTTGCCTATGGATCTTTTGTCTAGCAAGGGAAAAATGAGGAAGAGGAGTTCAATACTGGGCCACTTTCTGTCCTCATGATGAGTGTTAAGAATAACACACAGGTATCTAATATCTTTAGCACCTACAACTGTGTCTTTCTTCATGTCGTGTTTATTTATCAATTTTAATTGTTAAAAAGAGAGATAAAATCTATCCTGGAGCCTTGTTTATGTTGACAATTTACTTTTTAAAGTCATGCCGGTATACTTCCTCATTAATCTTAGATTTAAATACTATAGAAAAAGATGCAAGCTTCGGTTTTGTATGTGGAAGGCATCAGCTTTGTGCTTGTTATTTTACAGATATTTTTTCTGGATCTAGGTGCTCATCAACTGTAGGAACAACAGGAAACTTTTTGGTCGTGTGAGAGCATTTGATTGTCACTGCAATATGGTGCTTGAAAATGTTAGAGAAATGTGGACTGAGGTTTGTTTGTTCTTGACTTAATCAACTTTTTGGGACAATGTGTATTGTGTCTTGGATCTGTATCTTGCGTCAAAAAGCTCCAGTTACCAAGATTGTTTATATTATTTTTCAGGTTCCTAAGGGCAATGTGTCTTGGATTTGAAACTTGTACAAAAAGACTCCACTTAACAAAGTTGTTTATGTTTATTCTTCAGGTGCCCAAGACTGGAAAAGGAAAAAAGAAAGCTGTTGCTGTTAACAAAGATAGGTTTATCAGCAAGATGTTCCTTCGGGGAGATTCTGTGATCATTGTCCTCCGAAATCCTAAGTAGAGAGGTACTGTTGGATCTTTGACATAGTGGTTGGAGTAATTTTCTTTGAATTATGAGCTAGTTCCTTTAATTGGTCCATGTTTGAAGTGCAATATCCTTTTAACTTGCTATTATGTAATCAAATGTTTGGTATATAAGAACTGTAAATGCTAAGTAATATTTGTTGAATCCATTATTGTGAAATTTATCAATTTATTATCATAAATAAAATTTGGAACTTCAAAAATGATTAACTCTTAGCATTTAAATAATTGTCTTTTCTGATGAACTATGAAGATCTATAATAAATGAAATATAACGTTCCTATAAATATCAGAAAAATGTGTATACATATGATAGGAAGCTCAAGGTTGGGATCAGGAAACAAACTAGTGGATTAAAATCTGCAAGTTCTATTCTCCAAGTTTAGCTAATGAAGTATGAAGACTGTAAAAATGGTACTGAAAGAACTAACCTCATGCTCGAAAAACTCTCCTGCTAGAGCAGTGCATGGGATTAGGAAGAGCATGAGAACATATATTGTTTTCACTGCTTCCCTTTTATCTCTTGTTGAGCAAAAGATCTATCGGTAACATCATCTCTTACCTTACAAGGTAGGGGAAAGTTTTGTGTACACGTTACCCTCCTCACCAAACCCCACTTGTTGGGATTCATTCTGGGGTTTGTTGTTTTTGGACATATTTCTGTCTGCATACAAAAATGTTCCATTTCGTCTTCTTTTTTCTACTTGAAATGCATTTCTGTGTGGTTATGCACATTCTTAATTTTTCCCTTGGTGTTCCCACATTTTTGTTTGCCTGTATTTAATTATCTGATCGTTGGTAGTAATTCAATACACTTGTGTACTGCAGGTGAATTGGATTTCTGTGCTTTGGAGCAAAACTTGTAAGCAGCTAGGATTTGGACCAGCTCTGTATAACCTTTCGTATTCGGGAATTTGGCTAGGCAGAACACCACCTTTGATTGCTGTAAGACTTGATATAAGATTTTGATGTTCTGGTATGCTATATACTGTTGTCTTCTTCACAAACTTATTGTAGACGTTGGAGTTTTAACGTTCTTGTTGTGTATGTTGAATCCTATGACCAGCTAATATGTACGGTAAATGTCTTGCATTAACTCC----AGATACATTGTCCATTTGCGTGCGTGCTTGTCTATTTAACTATGTCTAGTTCTGGCACATGCATTGGTTGGACAAATGCAATATCGAGAGTTTGAAACTGAGAGGCACGGAGATATCAAGAGTAAATTATTACCCTTGGCTGTTATGCTGTGCATCACTAATTTAATTTTGGAAGAAGCGG</genome_strand>
        <mrna_strand>CCTTTACCCTCTTTAAACCCTAGCTCCTTTGCCCACTTTTTTTTGTTGCTCTTCAATTTCTTCTGCTTGATCGAAGATGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGACCAATGGAAGAGGATGCCCCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGGAAAAATGAGGAAGAGGAGTTCAATACTGGGCCACTTTCTGTCCTCATGATGAGTGTTAAGAATAACACACAG...................................................................................................................................................................................................................................................................GTGCTCATCAACTGTAGGAACAACAGGAAACTTCTTGGTCGTGTGAGAGCATTTGATCGTCACTGCAATATGGTGCTTGAAAATGTTAGAGAAATGTGGACTGAG..................................................................................................................................................................................................GTGCCCAAGACTGGAAAAGGAAAAAAGAAAGCTGTTGCTGTTAACAAAGATAGGTTTATCAGCAAGATGTTCCTTCGGGGAGATTCTGTGATCATTGTCCTCCGAAATCCTAAGTAGAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATTGGATTTCTGTGCTTTGGAGCAAAACTTGTAAGCAGCTAGGATTTGGACCAGCTCTGTATAACCTTTCGTATTCGGGAATTTGGCTAGGCAGAACACCACCTTTGATTGCTGTAAGACTTGATATAAGATTTTGATGTTCTGGTATGCTATATACTGTTGTCTTCTTCACAAACTTATTGTAGACGTTGGAGTTTTAACGTTCTTGTTGTGTATGTTGAATCCTATGACCAGCTAATATGTACGGTAAATGTCTTGCATTAACTCCAAAAAAAAAAAAAATCCATAAGCGTGCGTGCTTGTCTATTTAACTATGTCTAGTTCTGGCACATGCATTGGTTGGACAAATGCAATATCGAGAGTTTGAAACTGAGAGGCACGGAGATATCAAGAGTAAATTATTACCCTTGGCTGTTATGCTGTGCATCACTAATTTAATTTTGGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U323674" ref_strand="+" ref_description="SGN-U323674        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: AT3G62860.1 | Symbol: None | esterase/lipase/thioesterase family protein, similar to monoglyceride lipase from (Homo sapiens) GI:14594904, (Mus musculus) GI:2632162; contains Interpro entry IPR000379 | chr3:23250421-23253226 REVERSE | Aliases: F26K9.290 (evalue: 4e-73, score=271) genbank/nr: gi|30695682|ref|NP_191845.2| esterase/lipase/thioesterase family [Arabidopsis thaliana](evalue: 3e-71, score=271)">
      <seq>aaggtgaagccacatcctgtggttataagcttactaactaaagtggaggatgtcataccaagatggaagatagtccctacgaaggatgtcattgattcggccttcaaggaccccgctaaaagggaagaggtacgcgagaacaagttaatttatcaggcaaagccaagactaaagacagctttggaaatgctaagaaccagcatgcaccttgaggaaagtttgcacgaggtcactgtaccatttttagtgttacatggggaagcagacatagtaactgatccagaaataagtaaggctttatacgagcaagcgagtagcaaagacaagactataaaactctatccaggaatgtggcatggtttgacatatggtgagccagaagaaaacattgaaatcgtattttcagatatcatctcgtggcttgacaagcgaaatggagagaatactggtgatgctagtttaatcgagagatcagtttgtcgagctacatctactcctccatatgagatgcacacagtttcttcacctgcaacaatgaaagaaacaaaaccacatagaacgcgtccccaagctaattatctgtgtggattgaaaggacgtcgaatgcatcatcattcatctatgtagaaacttgatcgatagatatggcgtgttgcatctccttcatttgttcattcgcgttacggtggcataaatgttactactattatttatcaaggaagtggaaaataacatgttttacactatgaagttttgttggacatatttgatgatgaagacgagggaaatacttcaggttactttacacggccaatccaactcttttaaattcttacaaatataaaatgaagtttgaggttgataacctagctttattcttaaatttaagcatcctcatttgttgtagtagtatcatcacagagtgtattataaactctacgatggtcatgaatcatctagttttttctagtttttattttttttatgcttgttaattagtagaggtttgatgtcagtaaggtaaggcttagcccccttgcttgtacttttctctttattaataaaactagcccttggcacaccttacctagcggaattgcttcaaagaataaaaaaaagattgttttccagaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="99966" stop="98012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99666" g_stop="99538" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99537" i_stop="99414" i_length="124">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99413" g_stop="99315" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="228" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99314" i_stop="99218" i_length="97">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99217" g_stop="98310" g_length="908"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="1136" r_length="908" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1137" polyA_stop="1151"/>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-U323674" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1136</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U323674" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99666" e_stop="99538"/>
          <exon e_start="99413" e_stop="99315"/>
          <exon e_start="99217" e_stop="98310"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGTGAAGCCACATCCTGTGGTTATAAGCTTACTAACTAAAGTGGAGGATGTCATACCAAGATGGAAGATAGTCCCTACGAAGGATGTCATTGATTCGGCCTTCAAGGACCCCGCTAAAAGGGAAGAGGTGAGGCTAATTGTTAAGTTAATATGCAACATTTGCTAGCTTCCAAGTATTAATGATGTGCGGCATCCAATTCTTGTCCTCCATCAAAACATGATGTCCATTTCTTGTCATTTTGCAAGTGTAGGTACGCGAGAACAAGTTAATTTATCAGGCAAAGCCAAGACTAAAGACAGCTTTGGAAATGCTAAGAACCAGCATGCACCTTGAGGAAAGTTTGCACGAGGTAACTATTACCTAACCGTCTTCCATGTAAACAATAATTGAATCATTCCGACAAATTGGAAACTGGAAATGATGTGTAGTTGAAAATGTTTCGACAGGTCACTGTACCATTTTTAGTGTTACATGGGGAAGCAGACATAGTAACTGATCCAGAAATAAGTAAGGCTTTATACGAGCAAGCGAGTAGCAAAGACAAGACTATAAAACTCTATCCAGGAATGTGGCATGGTTTGACATATGGTGAGCCAGAAGAAAACATTGAAATCGTATTTTCAGATATCATCTCGTGGCTTGACAAGCGAAATGGAGAGAATACTGGTGATGCTAGTTTAATCGAGAGATCAGTTTGTCGAGCTACATCTACTCCTCCATATGAGATGCACACAGTTTCTTCACCTGCAACAATGAAAGAAACAAAACCACATAGAACGCGTCCCCAAGCTAATTATCTGTGTGGATTGAAAGGACGTCGAATGCATCATCATTCATCTATGTAGAAACTTGATCGATAGATATGGCGTGTTGCATCTCCTTCATTTGTTCATTCGCGTTACGGTGGCATAAATGTTACTACTATTATTTATCAAGGAAGTGGAAAATAACATGTTTTACACTATGAAGTTTTGTTGGACATATTTGATGATGAAGACGAGGGAAATACTTCAGGTTACTTTACACGGCCAATCCAACTCTTTTAAATTCTTACAAATATAAAATGAAGTTTGAGGTTGATAACCTAGCTTTATTCTTAAATTTAAGCATCCTCATTTGTTGTAGTAGTATCATCACAGAGTGTATTATAAACTCTACGATGGTCATGAATCATCTAGTTTTTTCTAGTTTTTATTTTTTTTATGCTTGTTAATTAGTAGAGGTTTGATGTCAGTAAGGTAAGGCTTAGCCCCCTTGCTTGTACTTTTCTCTTTATTAATAAAACTAGCCCTTGGCACACCTTACCTAGCGGAATTGCTTCAAAGAATAAAAAAAAGATTGTTTTCCAGATATT</genome_strand>
        <mrna_strand>AAGGTGAAGCCACATCCTGTGGTTATAAGCTTACTAACTAAAGTGGAGGATGTCATACCAAGATGGAAGATAGTCCCTACGAAGGATGTCATTGATTCGGCCTTCAAGGACCCCGCTAAAAGGGAAGAG............................................................................................................................GTACGCGAGAACAAGTTAATTTATCAGGCAAAGCCAAGACTAAAGACAGCTTTGGAAATGCTAAGAACCAGCATGCACCTTGAGGAAAGTTTGCACGAG.................................................................................................GTCACTGTACCATTTTTAGTGTTACATGGGGAAGCAGACATAGTAACTGATCCAGAAATAAGTAAGGCTTTATACGAGCAAGCGAGTAGCAAAGACAAGACTATAAAACTCTATCCAGGAATGTGGCATGGTTTGACATATGGTGAGCCAGAAGAAAACATTGAAATCGTATTTTCAGATATCATCTCGTGGCTTGACAAGCGAAATGGAGAGAATACTGGTGATGCTAGTTTAATCGAGAGATCAGTTTGTCGAGCTACATCTACTCCTCCATATGAGATGCACACAGTTTCTTCACCTGCAACAATGAAAGAAACAAAACCACATAGAACGCGTCCCCAAGCTAATTATCTGTGTGGATTGAAAGGACGTCGAATGCATCATCATTCATCTATGTAGAAACTTGATCGATAGATATGGCGTGTTGCATCTCCTTCATTTGTTCATTCGCGTTACGGTGGCATAAATGTTACTACTATTATTTATCAAGGAAGTGGAAAATAACATGTTTTACACTATGAAGTTTTGTTGGACATATTTGATGATGAAGACGAGGGAAATACTTCAGGTTACTTTACACGGCCAATCCAACTCTTTTAAATTCTTACAAATATAAAATGAAGTTTGAGGTTGATAACCTAGCTTTATTCTTAAATTTAAGCATCCTCATTTGTTGTAGTAGTATCATCACAGAGTGTATTATAAACTCTACGATGGTCATGAATCATCTAGTTTTTTCTAGTTTTTATTTTTTTTATGCTTGTTAATTAGTAGAGGTTTGATGTCAGTAAGGTAAGGCTTAGCCCCCTTGCTTGTACTTTTCTCTTTATTAATAAAACTAGCCCTTGGCACACCTTACCTAGCGGAATTGCTTCAAAGAATAAAAAAAAGATTGTTTTCCAGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U329970" ref_strand="+" ref_description="SGN-U329970        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: AT3G62860.1 | Symbol: None | esterase/lipase/thioesterase family protein, similar to monoglyceride lipase from (Homo sapiens) GI:14594904, (Mus musculus) GI:2632162; contains Interpro entry IPR000379 | chr3:23250421-23253226 REVERSE | Aliases: F26K9.290 (evalue: 2e-63, score=238) genbank/nr: gi|30695682|ref|NP_191845.2| esterase/lipase/thioesterase family [Arabidopsis thaliana](evalue: 1e-61, score=238)">
      <seq>gcacgagtctccctgttttccaagaattcaatatcttactatacttttatcgtatcaataatcactttttctctgtaaaaataattgcatctataaggccataatacacagatctgttacttacccatgaatgttgagtcacatttctgagttgggatttggttattttttctgaaaatatacaatgggtgttgaatatcatgaggtatttataaggaattcaagaggtgtacaactcttcacttgtagatggttgcccttttcttctccaaaagctcttgttttcctttgccatggttatggcatggaatgcagtagattcatgagaggtgttgggacaaagctggcagataatggatatgcggtgtttggaatagattatgaaggtcatggacgatcagcgggtgcgcgctgttacatcaaaaagtttgacaacattgtcaatgactgcagcgagtttttcaagtcagtttgtgcgcacgaggagtatagagagaaaaaacggtttctgtatggggagtcgatgggaggggccgtggctcttttaacacacaagaaggatccttccttttggcatggtgctcttctggttgcacctatgtgtaagatatctgaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="103585" stop="99500"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103292" g_stop="103088" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103087" i_stop="102966" i_length="122">
            <donor d_prob="0.489" d_score="1.00"/>
            <acceptor a_prob="0.818" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102965" g_stop="102875" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="296" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102874" i_stop="102797" i_length="78">
            <donor d_prob="0.823" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102796" g_stop="102764" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="329" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102763" i_stop="100341" i_length="2423">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="100340" g_stop="100194" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="476" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="100193" i_stop="99934" i_length="260">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.213" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99933" g_stop="99803" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="607" r_length="131" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-U329970" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U329970" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103292" e_stop="103088"/>
          <exon e_start="102965" e_stop="102875"/>
          <exon e_start="102796" e_stop="102764"/>
          <exon e_start="100340" e_stop="100194"/>
          <exon e_start="99933" e_stop="99803"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATCCCTCTCCCTGTTTTCCAAGAATTCAATATCTTACTATACTTTTATCGTATCAATAATCACTTTTTCTCTGTAAAAATAATTGCATCTATAAGGCCATAATACACAGATCTGTTACTTACCCATGAATGTTGAGTCACATTTCTGAGTTGGGATTTGGTTATTTTTTCTGAAAATATACAATGGGTGTTGAATATCATGAGGTGGGTTTTTGTTCTTTTTGCTTTTTTTCTTCAATGAGCATGCATATTTTTCTTCTTTACTTTGTACAATATGGTGTTTTTCTTAATAAAAATTGTGTCTTTACTTACATCAATGGCATTAGGTATTTATAAGGAATTCAAGAGGTGTACAACTCTTCACTTGTAGATGGTTGCCCTTTTCTTCTCCAAAAGCTCTTGTTTTCCTTTGCCATGGTTTGTATTTTTTATTTTTTTTGGTTTTTGTTGAAATTTGATTTAACAAATTGATTAATGATGTCGTTGTTGTTGTAGGTTATGGCATGGAATGCAGTAGATTCATGAGAGGTATAGTAATAAATGTTTCCTCTTTTAATTTGTTTTCACTTTCATGGCCAACTTTTCTGTAGAAATGTTTGTATTCCTTGTGGTTTTAATGTTTGGATGGATAATCGGATTCATATGAATTCAATACTTTTGAAGTACGGTAAACAATGAATATGAATTCGTAGTTAAACTTTGAACACATAAAGTTTAAATCTTGAATCGGATTCTGGTGCCATCAATGCATGTCATGACTTTTTCCTCCTACTTCTTGTGACTTGATATATATGTCATTCAACAGATTGTTTTACTTCTACCATCTTTTTTCTTCCTGTTGAGTTTGTCACAGAGTAACAGTGAAAAAGGAACCCACTTTTTATGCTTTTGGGGTTCATTTCTTTTTCTTTGTTGATCACTCAGTTGAATCCCGATTAAATTTGGATTCGCGCCAGAAGTCCAACAATAGGGATAAAGCGTTTCCTAACAAAGTGTATTCTGTAGCTAGGACACTTGAACCCGAGCTGTGGTTAAGAATGAAGGAGAACTTAGCACTCCACTACAACCCTTGTTGGTCTTGGTGGTCCATTTATGTGGTGAGGTGACCTTAATTTTAGTGTTGTACAATATGGGCCATTTTCCTGCTACACTTGCCTATATTTTTATTTTAGGTGACCAACCATACCAGTAAAATTTATGTCTCTTATCATATCTTTTTAAAAGTCCTTTTTTTTTATATATATTTGTGAACAGTTGGCTGAATACAATAATTTAGAGGAGTTTCAGTTGGTGCCCATATCTTGTCATTTACCTATTTTGTTGAGAACTTCTAATACTTTTTCAGTCTCTATTTTGTTTTATATTCGATAAAGATGATCTTAAATAGAGCGACATGGACAGTGAAGATTCCTATAGCCAACTGGCTTGCTTGAGATTGAAGTGGAGTTTCATGTTAGCTATCTTGGCAGTATGTGCATTATGTTTATCTGGTTGTGGGATATTATTATACAAGAATATCTTTTTTATAGGGCACAATTATTGGTGATATATAATAATGCAATTGTTAGGAGCTAGTAGTTAAAAATGCAACGAAAAATGGTTCTCAAATTGAATGCCAGACTGAAAACTCACCTAACATACTGATCCTCTCATACTGAAGGTACTATAGATTTGCTGAAACAAAGTAATTTTTACCCTTGAATAACATCCTTATATGGTTTACAGCTGCATGATTAGTCTGTTTCTTGTCCTTTTTTGGTTAATTTGCTAATTAACAGCTATGTTGGAACTTCATTGTTTGCCTACTAAAATAAGGAGGATTAATGGTTTGCTGGTAGGTTGGTTGACTATTGAGAAACATAATAAAATTAAAAGTCCTATCTTGGTAGTTTGATAGATTAATTAGGTTAGCAAATTAGTTGGGCCCTATAAGTAACCTCAATTAAAGATTGCTTCACACACCAAAATTTGTGGGACACTTTGAATTCAACTTAACAAGTCAAATCATAAAAGTTTAAAACATAACATAGATTTTAATGGTAGGTAAGTATGATAGGTACATCTGAAATCATTTAAGAGTCATCTAACTTTAAGACTTTGACTATTCAAAAGAAAAAAGTAAACAAGAAAAATGAAATATATTTTAAAATGTTGCTTAAGCCTTGACAAACAAAGTTACCTTGTACCTCTGTTGGTATGAGGTAGTAGGTGCCAGAAGAATAGTCGAGGAGGTGCGTGTGTACTAGCTCGGACACGACTATCATGAAAACAGATATTCTGAAATGTTACTTGACCTGTTCAACTTGGCTTCCAGTGAGAAAAGCTTCTGGTTTTCTTATTCTTGGACCAGGGGATTTTAGCTGCTAGTCTATTTTGGAGTTTTTTGTTCTGACCTGGACCACCTTGAGTATTAGCATTCTTTCTCTAACCTCTACCAAGTTTTTCTGTTGACAAATGATGTGTCATCAAACATTTGCTTTTCCTTCTATTTCTGTTTTTCAAAAAAAGAATAGTAGGTGGGACTTGGAGATGGGAATATTACCTTATACACATAACTGAAATACTGTTGTGACTTTACAGTGTTTGACGTTGCTCAATCCATCTGTCTTGAGTGGTTCAACCAACTGTTGGAGGAATCTTCGGTTGAATTCTCATATGGTCACTCAACTTATAGTTATTATCTCAAAAAGTCATTTATATTCTTGATTTCAATTTTCTTCAACAACGATGGTAACTTTCTGAGATCATAACTAAAAGTTGAGTGACATGAGAAATCAAGTTTGTAATTTTGTCTAGCCCCATATACCTAAGGAGAGTCTCACACAATTGCTACGTATGCGTGCATGAAGCCAATAGATTGATGCTCTTTCTTGTGCACAATAGAATTGTGAAAGCTCGTGGCACAGATCCAACTTAACATAGATATTGTACATTTGTACTATTATGGATAGGTGTTGGGACAAAGCTGGCAGATAATGGATATGCGGTGTTTGGAATAGATTATGAAGGTCATGGACGATCAGCGGGTGCGCGCTGTTACATCAAAAAGTTTGACAACATTGTCAATGACTGCAGCGAGTTTTTCAAGTCAGTTTGTGGTAAGCTACCAAATGCCCTCTTGGTTCACAAGTAGTCTAACCCTCATTGTTATCAGTTAAGTATAGACCACCTGACCTCAGAAGCTGTCACAGTGACGAATAATCCATCTTTGATTTTCCTTTCGCTTGGGATTTTTTTGGAGTAGCTTTATTTAAGTTGAATATTTTTCAGCCTGATAGGTGTGGTTACATCTTACAATTGTTAAAAAGCTTCAGACTTGTTATCCTCTTGCTAAAATGCCCGTTCTCTTGAAAATCAGCGCAGGAGGAGTATAGAGAGAAAAAACGGTTTCTGTATGGGGAGTCGATGGGAGGGGCCGTGGCTCTTTTAACACACAAGAAGGATCCTTCCTTTTGGCATGGTGCTCTTCTGGTTGCACCTATGTGTAAG</genome_strand>
        <mrna_strand>GCACGAGTCTCCCTGTTTTCCAAGAATTCAATATCTTACTATACTTTTATCGTATCAATAATCACTTTTTCTCTGTAAAAATAATTGCATCTATAAGGCCATAATACACAGATCTGTTACTTACCCATGAATGTTGAGTCACATTTCTGAGTTGGGATTTGGTTATTTTTTCTGAAAATATACAATGGGTGTTGAATATCATGAG..........................................................................................................................GTATTTATAAGGAATTCAAGAGGTGTACAACTCTTCACTTGTAGATGGTTGCCCTTTTCTTCTCCAAAAGCTCTTGTTTTCCTTTGCCATG..............................................................................GTTATGGCATGGAATGCAGTAGATTCATGAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGGGACAAAGCTGGCAGATAATGGATATGCGGTGTTTGGAATAGATTATGAAGGTCATGGACGATCAGCGGGTGCGCGCTGTTACATCAAAAAGTTTGACAACATTGTCAATGACTGCAGCGAGTTTTTCAAGTCAGTTTGTG....................................................................................................................................................................................................................................................................CGCACGAGGAGTATAGAGAGAAAAAACGGTTTCTGTATGGGGAGTCGATGGGAGGGGCCGTGGCTCTTTTAACACACAAGAAGGATCCTTCCTTTTGGCATGGTGCTCTTCTGGTTGCACCTATGTGTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U332873" ref_strand="+" ref_description="SGN-U332873        Tomato 200607 #1 [2 ESTs aligned]">
      <seq>gccaactggcttgcttgagattgaagtggagtttcatgttagctatcttggcagtatgtgcattatgtttatctggttgtgggatattattatacaagaatatcttttttatagggcacaattattggtgatatataataatgcaattgttaggagctagtagttaaaaatgcaacgaaaaatggttctcaaattgaatgccagactgaaaactcacctaacatactgatcctctcatactgaaggtactatagatttgctgaaacaaagtaatttttacccttgaataacatccttatatggtttacagctgcatgattagtctgtttcttgtccttttttggttaatttgctaattaacagctatgttggaacttcattgtttgcctactaaaataaggaggattaatggtttgctggtaggttggttgactattgagaaacataataaaattaaaagtcctatcttggtagtttgatagattaattaagttagcaaattagttgggccctataagtaacctcaattaaagattgcttcacacaccaaaatttgtgggacacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="102176" stop="101010"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101876" g_stop="101310" g_length="567"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="567" r_length="567" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-U332873" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U332873" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101876" e_stop="101310"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCAACTGGCTTGCTTGAGATTGAAGTGGAGTTTCATGTTAGCTATCTTGGCAGTATGTGCATTATGTTTATCTGGTTGTGGGATATTATTATACAAGAATATCTTTTTTATAGGGCACAATTATTGGTGATATATAATAATGCAATTGTTAGGAGCTAGTAGTTAAAAATGCAACGAAAAATGGTTCTCAAATTGAATGCCAGACTGAAAACTCACCTAACATACTGATCCTCTCATACTGAAGGTACTATAGATTTGCTGAAACAAAGTAATTTTTACCCTTGAATAACATCCTTATATGGTTTACAGCTGCATGATTAGTCTGTTTCTTGTCCTTTTTTGGTTAATTTGCTAATTAACAGCTATGTTGGAACTTCATTGTTTGCCTACTAAAATAAGGAGGATTAATGGTTTGCTGGTAGGTTGGTTGACTATTGAGAAACATAATAAAATTAAAAGTCCTATCTTGGTAGTTTGATAGATTAATTAGGTTAGCAAATTAGTTGGGCCCTATAAGTAACCTCAATTAAAGATTGCTTCACACACCAAAATTTGTGGGACACTTT</genome_strand>
        <mrna_strand>GCCAACTGGCTTGCTTGAGATTGAAGTGGAGTTTCATGTTAGCTATCTTGGCAGTATGTGCATTATGTTTATCTGGTTGTGGGATATTATTATACAAGAATATCTTTTTTATAGGGCACAATTATTGGTGATATATAATAATGCAATTGTTAGGAGCTAGTAGTTAAAAATGCAACGAAAAATGGTTCTCAAATTGAATGCCAGACTGAAAACTCACCTAACATACTGATCCTCTCATACTGAAGGTACTATAGATTTGCTGAAACAAAGTAATTTTTACCCTTGAATAACATCCTTATATGGTTTACAGCTGCATGATTAGTCTGTTTCTTGTCCTTTTTTGGTTAATTTGCTAATTAACAGCTATGTTGGAACTTCATTGTTTGCCTACTAAAATAAGGAGGATTAATGGTTTGCTGGTAGGTTGGTTGACTATTGAGAAACATAATAAAATTAAAAGTCCTATCTTGGTAGTTTGATAGATTAATTAAGTTAGCAAATTAGTTGGGCCCTATAAGTAACCTCAATTAAAGATTGCTTCACACACCAAAATTTGTGGGACACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U344211" ref_strand="+" ref_description="SGN-U344211        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>tttcaactacaaatctatttgagtattgagttatttttacttcattctgaattagagatttcgaatttgagtcttttgaatataaagagtttttggatccaaatctttttgaaaataaaatatttcgagtttaaatctttgtgcgtatacagtaatttttactttattctaaattagaaattttaaatttaaattttttagtacaaaaaaaaattaaattgcaaattttaatttaatcaaacttcaatataaatataaggttaaaaatccccgaatacacttctcctcatcatatcttatatatttatctatttatatctttctgtatatattccaacttctcaggtccactttatccctctccctgttttccaagaattcaatatcttactatacttttatcgtatcaataatcactttttctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="103944" stop="102919"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103644" g_stop="103219" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="426" r_length="426" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-U344211" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U344211" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103644" e_stop="103219"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAACTACAAATCTATTTGAGTATTGAGTTATTTTTACTTCATTCTGAATTAGAGATTTCGAATTTGAGTCTTTTGAATATAAAGAGTTTTTGGATCCAAATCTTTTTGAAAATAAAATATTTCGAGTTTAAATCTTTGTGCGTATACAGTAATTTTTACTTTATTCTAAATTAGAAATTTTAAATTTAAATTTTTTAGTACAAAAAAAAATTAAATTGCAAATTTTAATTTAATCAAACTTCAATATAAATATAAGGTTAAAAATCCCCGAATACACTTCTCCTCATCATATCTTATATATTTATCTATTTATATCTTTCTGTATATATTCCAACTTCTCAGGTCCACTTTATCCCTCTCCCTGTTTTCCAAGAATTCAATATCTTACTATACTTTTATCGTATCAATAATCACTTTTTCTCT</genome_strand>
        <mrna_strand>TTTCAACTACAAATCTATTTGAGTATTGAGTTATTTTTACTTCATTCTGAATTAGAGATTTCGAATTTGAGTCTTTTGAATATAAAGAGTTTTTGGATCCAAATCTTTTTGAAAATAAAATATTTCGAGTTTAAATCTTTGTGCGTATACAGTAATTTTTACTTTATTCTAAATTAGAAATTTTAAATTTAAATTTTTTAGTACAAAAAAAAATTAAATTGCAAATTTTAATTTAATCAAACTTCAATATAAATATAAGGTTAAAAATCCCCGAATACACTTCTCCTCATCATATCTTATATATTTATCTATTTATATCTTTCTGTATATATTCCAACTTCTCAGGTCCACTTTATCCCTCTCCCTGTTTTCCAAGAATTCAATATCTTACTATACTTTTATCGTATCAATAATCACTTTTTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U316124" ref_strand="+" ref_description="SGN-U316124        Tomato 200607 #1 [20 ESTs aligned] arabidopsis/peptide: | Symbol: None | 60S ribosomal protein L22-2 (RPL22B), identical to 60S ribosomal protein L22-2 SP:Q9M9W1 from (Arabidopsis thaliana) | chr3:1614201-1615488 FORWARD | Aliases: F18C1.17, F18C1_17(evalue: 1e-31, score=133) genbank/nr: Ribosomal(evalue: 1e-30, score=136)">
      <seq>agggcgattggcggccaatcggccgaattgagggtcggggcgacgggtcaaataggaagaggaacgaggaaaaccctaattaaatataatcatccacttccatacactcgcagtcggccgccgtcgaatttctccctatttgaatagcagcagaagagaaatcaagagcgtaaagatgagccgagcagcagcagcagtgaagggcgggaagaagaagggggcaagcttcgtcatcgactgttcgaagccagtggaggacagtattatggagattgcttctcttgacaagttccttcaagagagaattaaggttggtggaaaagctggtgcacttggagattccgttactgtcactcgtgataagaataaaatcaccgtcacttgcaactccactttttccaagaggtacctcaaataccttgtcaaaaagtacttgaagaaaaacaacgttagggattggcttagggtgattgcttccaacaaggacaggaatgtttatgagttgcgctacttcaacattgccgagaatgaagcagatgaagaagattaaacatgtctagtcaatgtcccttttatcttcttattttgaaccttatatcatctgtttgagttattaatgagccgtatcttctcatttccagattattgattttttgtccccttatcagtaaaagaaaacgttactttgatacactttggtttgttcatctctggggtcaagtttttgcaaggcatcaatttctctgtattgccttttccctcttgatgatcacatgtaatttatagagtttatcttttgttgttcttgtgtctttcttttaaccactgcgccattgatgatttccttcaatccttngaaagatcgattgagactaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="+" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="107671" stop="111231"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107976" g_stop="108079" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="136" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108080" i_stop="108159" i_length="80">
            <donor d_prob="0.876" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108160" g_stop="108428" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="405" r_length="269" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108429" i_stop="110461" i_length="2033">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110462" g_stop="110940" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="884" r_length="479" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="+" ref_id="SGN-U316124" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>852</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U316124" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107976" e_stop="108079"/>
          <exon e_start="108160" e_stop="108428"/>
          <exon e_start="110462" e_stop="110940"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCGGGGCGACGGGTCAAATAGGAAGAGGAACGAGGAAAACCCTAATTAAATATAATCATCCACTTCCATACACTCGCAGTCGGCCGCCGTCGAATTTCTCCCGTATGTATTTTCCAACTTTTTCTCCGGCGATGAACATGAGCTTTGTGTTTGAGATCTGACGATTTTTGTTTTGTTTTCAGTATTTGAATAGCAGCAGAAGAGAAATCAAGAGCGTAAAGATGAGCCGAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATCGACTGTTCGAAGCCAGTGGAGGACAGTATTATGGAGATTGCTTCTCTTGACAAGTTCCTCCAAGAGAGAATTAAGGTTGGTGGAAAAGCTGGTGCACTTGGAGATTCCGTTACTGTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAGGTACTGACTAGTACTATATTTCCACTCCTCATTTCGTGTAATTTGGGTTTTTGCCTGATTTTTAATTGGGTTTATTTGAAAAAATTGATCGTTGAAACTTCGTGTGGGTCGACTTTCATTGTAGTTTGATAATGTTTACACTGACAGATTGATAGGATTTTAGCGTAAACCTATTCTTTTATTCGGGATGTGCTATGCTCTGCAAGGAGTTGTTTTGTTTGGAATAGTGTAGTCATTCACGCATTGAGCTTTGAGTCAGTTGATAATGGGTTAAAATAGAGTTCTTTTTGCAGTTTATTTTAGTTATCAATAGTGATGATGATTGTGTGTTTGTGTTATGTCATTCTACTGCTTGTTTATTCAAAATATTATCCTATTTACATTGAGAAATAAGGAGAAATAGAAGAACTAAAACAGCAGCGTAATATCTTGTAGGTAACCATTTGTATCTTGAACTAGGTATCCTAATTATCCTTGTAGCTCTTGCTGAACTTATGGAACAGATAGTCTATGAGCTCTACACTTCAACGTCCAAGATTAGAAATCGGGGTTGGCTTTTATCGTACTTGGATTATTTTCACAACTGACAGATTGAAATTAACTTATCATAGCCTCTTTTATTGTGGCTTGTTTCTGCTTTACCAAGAGCTCTTATTTGGAATAGTGCATTCATTTATATTTTAAGCTCAGAGTAGATTAACAGTGGTTTTCAAAAGAGGTCCTTTTTGCTGTTTATTTTAGTTTGAGTGCCCTGCACTGCAAGTCTAATAAATAAGCCCTTCTATTCTGGAGTTATTACATTGAAGAGGATGAGCTTATGTCATTCTACTTTTCGTTCATCTAATGCATTATCTTACTTACATTGAGAAGCAAAGAAATAACAGAAAAATTATGGTGGCGTAGTATCTTGTAGTTATTCGTAAATCCAACTGTTTATCTTGTAATTATCCGTAAATCCAACTGTTGGTCTTCTCATATAGCAGGTTCAACCAGGCCCCAGTAACCACTGTTACATTTTTGGACTGTTGTCTGCTCTTTAGTTATTTAGTAAATTTTTATAAATTAGCAGACCCCTTCTTTTGCTTGCATCTTCTTGATGCCTTCTAATGAAATCTCTTTCATCTAAAAAAGATATTCATAACTTGAATAGGGTATGTGCATAATGTTATATAATTATAATAATCCTCACAGATCTTCCTGAATTTATGTTCAGATTGTCAGTGAGCATTAGCTAGATTGTTTGGCTCCTCCCACTTCTCAGTGAAGTAGATTCTTAAGTAGGCGGTTGTTGATGAGACCAATTAGACTGCAACCTAGCCTTTCACTTGTGTCCATTAGTTTGCGTCAAGTGCAATTTTGTTGATTTCATCTTTTACATCCATAATCACACAGAATAGTACACTTGGATTATGTCAAATTACATGTGAAATAGGCTTGGAAGAACTAATATGTATTAAGTTTGTAACTTGAAAGAGATAGGTAACTAACATGTAAGCAGGCTTAGTTATAGGTAATTGATAATATTGATCATTATAGATGCTCTTGCTAACTGAAACATCCTTCAGGGCGTGTAAAGCATATTTTCATGTATTTTTTGTTGGGTTCTGAAGAAAGTCTTCATTTTTTATGTAAGTTTGATGCAGCTGAGTAGAATCTATAGTGGTATTCTTGTTTCATCTGATGTATGTTTCTAAGCTTGTTCTGGAAGTGACATCAACCACTTATTAGCATCACCATTTACCTAGCACATTTTTGGTTCAAGTGATAGTCCAAAGGCTACTTGTAAAAGAAACTGATACTCTAAAGAGAACCAAATGTCCAACATATTTATCATATTACTTTTTTTTTTTTGCAATTTCTGTATGCGCGATTAATGAAAAAAGCTATTGTGATGTTGCATTACTACTGCTATATATTTTATTAATCCTCTTCCCCCACTAAAACCAAAAGAAAGACTGTTAGAAGTAGTGAATTCAGGCAATTCAAGACTAGTAAACAATGCTCTACTTACAATTTTTTCTTCTACTTTTCAGGTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATTATTGATTTTTTGTCCCCTTATCAGTAAAAGAAAACGTTACTTTGATACACTTTGGTTTGTTCATCTCTGGGGTCAAGTTTTTGCAAGGCATCAATTTCTCTGTATTGCCTTTTCCCTCTTGATGATCACATGTAATTTATAGAGTTTATCTTTTGTTGTTCTTGTGTCTTTCTTTTAACCACTGCGCCATTGATGATTTCCTTCAATCCTTGAAAAGATCGATTGAGACTACCTTCATTG</genome_strand>
        <mrna_strand>GGTCGGGGCGACGGGTCAAATAGGAAGAGGAACGAGGAAAACCCTAATTAAATATAATCATCCACTTCCATACACTCGCAGTCGGCCGCCGTCGAATTTCTCCC................................................................................TATTTGAATAGCAGCAGAAGAGAAATCAAGAGCGTAAAGATGAGCCGAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATCGACTGTTCGAAGCCAGTGGAGGACAGTATTATGGAGATTGCTTCTCTTGACAAGTTCCTTCAAGAGAGAATTAAGGTTGGTGGAAAAGCTGGTGCACTTGGAGATTCCGTTACTGTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATTATTGATTTTTTGTCCCCTTATCAGTAAAAGAAAACGTTACTTTGATACACTTTGGTTTGTTCATCTCTGGGGTCAAGTTTTTGCAAGGCATCAATTTCTCTGTATTGCCTTTTCCCTCTTGATGATCACATGTAATTTATAGAGTTTATCTTTTGTTGTTCTTGTGTCTTTCTTTTAACCACTGCGCCATTGATGATTTCCTTCAATCCTTNGAAAGATCGATTGAGACTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U340805" ref_strand="+" ref_description="SGN-U340805        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>gagcattagctagattgtttggctcctcccacttctcagtgaagtagattcttaagtaggcggttgttgatgagaccaattagactgcaacctagcctttcacttgtgtccattagtttgcgtcaagtgcaattttgttgatttcatcttttacatccataatcacacagaatagtacacttggattatgtcaaattacatgtgaaataggcttggaagaactaatatgtattaagtttgtaacttgaaagagataggtaactaacatgtaagcaggcttagttataggtaattgataatattgatcattatagatgctcttgctaactgaaacatccttcagggcgtgtaaagcatattttcatgtattttttgttgggttctgaagaaagtcttcattttttatgtaagtttgatgcagctgagtagaatctatagtggtattcttgtttcacctgatgtatgtttctaagcttgttctggaagtgacatcaaccacttattagcatcaccatttacctagcacatttttggttcaagtgatagtccaaaggctacttgtaaaagaaactgatactctaaagagaacaaatgtccaacatatttatcatattacttttttttttttttgcaatttctgtatgcgcgattaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="+" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="109351" stop="110604"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109651" g_stop="110304" g_length="654"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="655" r_length="655" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="+" ref_id="SGN-U340805" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U340805" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109651" e_stop="110304"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCATTAGCTAGATTGTTTGGCTCCTCCCACTTCTCAGTGAAGTAGATTCTTAAGTAGGCGGTTGTTGATGAGACCAATTAGACTGCAACCTAGCCTTTCACTTGTGTCCATTAGTTTGCGTCAAGTGCAATTTTGTTGATTTCATCTTTTACATCCATAATCACACAGAATAGTACACTTGGATTATGTCAAATTACATGTGAAATAGGCTTGGAAGAACTAATATGTATTAAGTTTGTAACTTGAAAGAGATAGGTAACTAACATGTAAGCAGGCTTAGTTATAGGTAATTGATAATATTGATCATTATAGATGCTCTTGCTAACTGAAACATCCTTCAGGGCGTGTAAAGCATATTTTCATGTATTTTTTGTTGGGTTCTGAAGAAAGTCTTCATTTTTTATGTAAGTTTGATGCAGCTGAGTAGAATCTATAGTGGTATTCTTGTTTCATCTGATGTATGTTTCTAAGCTTGTTCTGGAAGTGACATCAACCACTTATTAGCATCACCATTTACCTAGCACATTTTTGGTTCAAGTGATAGTCCAAAGGCTACTTGTAAAAGAAACTGATACTCTAAAGAGAACCAAATGTCCAACATATTTATCATATTAC--TTTTTTTTTTTTGCAATTTCTGTATGCGCGATTAATG</genome_strand>
        <mrna_strand>GAGCATTAGCTAGATTGTTTGGCTCCTCCCACTTCTCAGTGAAGTAGATTCTTAAGTAGGCGGTTGTTGATGAGACCAATTAGACTGCAACCTAGCCTTTCACTTGTGTCCATTAGTTTGCGTCAAGTGCAATTTTGTTGATTTCATCTTTTACATCCATAATCACACAGAATAGTACACTTGGATTATGTCAAATTACATGTGAAATAGGCTTGGAAGAACTAATATGTATTAAGTTTGTAACTTGAAAGAGATAGGTAACTAACATGTAAGCAGGCTTAGTTATAGGTAATTGATAATATTGATCATTATAGATGCTCTTGCTAACTGAAACATCCTTCAGGGCGTGTAAAGCATATTTTCATGTATTTTTTGTTGGGTTCTGAAGAAAGTCTTCATTTTTTATGTAAGTTTGATGCAGCTGAGTAGAATCTATAGTGGTATTCTTGTTTCACCTGATGTATGTTTCTAAGCTTGTTCTGGAAGTGACATCAACCACTTATTAGCATCACCATTTACCTAGCACATTTTTGGTTCAAGTGATAGTCCAAAGGCTACTTGTAAAAGAAACTGATACTCTAAAGAGAA-CAAATGTCCAACATATTTATCATATTACTTTTTTTTTTTTTTGCAATTTCTGTATGCGCGATTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U316125" ref_strand="+" ref_description="SGN-U316125        Tomato 200607 #1 [9 ESTs aligned] arabidopsis/peptide: | Symbol: None | 60S ribosomal protein L22-2 (RPL22B), identical to 60S ribosomal protein L22-2 SP:Q9M9W1 from (Arabidopsis thaliana) | chr3:1614201-1615488 FORWARD | Aliases: F18C1.17, F18C1_17(evalue: 2e-31, score=132) genbank/nr: Ribosomal(evalue: 8e-31, score=136)">
      <seq>tttaacagagtcaccacttccatacactcacactaggccgtggacgtcgagtttcatcctcagaagagaaatacagagagtgtaaagatgagccgagcagcagcagcagcagtgaagggcgggaagaagaagggggcaagcttcgtcattgactgttcgaagccggtagaagacagtatcatggagattgcttctcttgacaagttccttcaagagaggattaaggttggtggaaaagctggtgctcttggggattccgttactgttactcgtgacaagaacaagatcaccgtcacctgcaactcaactttttccaagaggtacctcaaataccttgtcaaaaagtacttgaagaaaaataacgtcagggattggcttagggtgattgcttccaacaaggacaggaatgtttacgaattgcgctacttcaacattgctgagaatgaagcagatgaagaagattaaacatgaccattcaatgtctctctttatcttctttctttagtcggccttcactttttgatccttgtatcatcactaatgaatcctgtcttctcatttctagattttgtttttgcagtttgcttatcagtaaaagaaaacattacatcgatactttggtttgtctatctttggggataattatgaaaatgtcaatttatctgtattgccttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="+" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="111256" stop="115111"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111556" g_stop="111615" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111616" i_stop="111703" i_length="88">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111704" g_stop="111963" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="320" r_length="260" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111964" i_stop="114456" i_length="2493">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114457" g_stop="114811" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="675" r_length="355" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="+" ref_id="SGN-U316125" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U316125" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111556" e_stop="111615"/>
          <exon e_start="111704" e_stop="111963"/>
          <exon e_start="114457" e_stop="114811"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAACAGAGTCACCACTTCCATACACTCACACTAGGCCGTGGACGTCGAGTTTCATCCTGTACGTATGCTCCTACTCTTTTCTTCTCTGTTTCTCTGACGATGAGATTTGTTCTTGAGATCTGATAATTTTTGCTTTTGAATGCCAGCAGAAGAGAAATACAGAGAGTGTAAAGATGAGCCGAGCAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATTGACTGTTCGAAGCCGGTAGAAGACAGTATCATGGAGATTGCTTCTCTTGACAAGTTCCTTCAAGAGAGGATTAAGGTTGGTGGAAAAGCTGGTGCTCTTGGGGATTCCGTTACTGTTACTCGTGACAAGAACAAGATCACCGTCACCTGCAACTCAACTTTTTCCAAGAGGTACTGATTCTATTGCCTCATTTTCAGTTGTGTTTATTTGAAAAAAAAATGATTCTAGAAACTAAACTCTACTCGTAGATCATAAATTACTAGCTACAGTCGACTTCTATTATAGTTTGATAACGATTACACTTACCGATTGACAGTAACTTATCGCAGACCTATTCGATTATCCAGTGAGTTCTGTGTAGTCATTCACACATTAAGCTTTGACTCAGTTGGTAATCAGATAAATATATAGTTAATTTGATAAGTTTTTGATATTTGAATGATTAAATCCGACAAACAGAACCATTTTAGACCTACTCCTGTAGTTAAATGAACTATTTATTTAGGACATTATTCTCTCTTTTTTGGTGTTTATTTTTGTACTAGAGGACGGGCTTCGCACGTGTATTTTATGTGAATTTTTATAGATATGTTATAATGATAAAAATTTCATGGAAATATATATGTAAATTAATGAATAATATAATGTAACAATTACAAAATAAGAATAAAGACTTACGCAATAAAATATTCATAAAAAAACTAAATTAAGAAGTCTGATGGTGATAAAAATAAAAGACAAAAAAAAGACAGATTTAAGAATGATCCAATGTAAACAATGTTCTTATAAGACTGATGTATGTATAGATGAAAAAAATAAGTACATAACTCTCTGAGTTCTTATCGACTCCTTTCATATCCTATCAAAATTCAAGAGGTTTCTTCATCTACTTTAACTATTGAATGAAAATGATAGCCTAGTAATCTTGGTAGGGGTTTCATGAGATTAAAAAAGTTGAATTTATATAGATAGAATAGAAGGAATATCAAAAGATATATTAAAGTTTTAGTTTAAATATTTGGAGGTTATGAATATGAAAAGATGAGAGTTATGAATATTAAGAGTATAAAGTTGAATAAGTAATTAACAAATAATAATAAATAAATGAAGAATATGAAAAAAGAAGTTAAAATTAGCAAACCATGTAGAAAGAACAACTAAAGGTCTTATCACGTAATTAAGCGTTAATAAATTTAGATTTGTGAAGATAGAGTCATTCTTTAATAATAATCGAGAGGACATTATCAACGTGTGTCTCCATTTTGCAGATTTGCACCCTTTATATTATTAAATTCGTTATTTATCATAAAGGATAATACTTTATCCACATAAATTATATTATTCATGAGAGGGGTTAAGGAAAAAGTTATGAGAAAGAGGAAAAATATAGCAATTTAGTAAAGACTTTTTTTTTAAAAAAAAATTATAATTATTATATACATATAGATTATAGATGATAAATATTAATTAATTGGATATTTAATTAGAAATCAATCTTTAGAAGTCTAAAAGTCATTAACCTTTTAATTAAATTTATACAATCAAATATTTAAATATTTTATAACAATTTAATTTATAGGAGGGGTAAAACTGTAATTCAACTTTCAACTTTTTTTGTTGATGCTTTTAGTAATACATGATGAATTAAGAGTGCCCAGACTTGAAGCACAGTTCCACTCTGGATTTATCACTGTTTATTTATCCAAAAACACTATCCTGTTTACATTGGGAAATCAGTAGAAACAGAATGACTAAAACAGCAGTGTGTTCTAAGTTCGCATGATCGTTGAAGCCTTTACTAAGCTTATGGTACAGATAGTCTATATGCTTTATGATTAAGCAACTATGTCTGGGTCCCAAATTAGAAGTCAGGGTTGGCTTTTATTGGAGTTTGATTGTTTTTACAACTGACAGTCTGATATTAACTTATTCATAGCTTCTTTTATTTTGGCTCGTCTCTGCTTTACAAAGATTTCTTATTTGGATAGTGCAACAGCAACAACACCATACCCCATGTAACCCACAAGTGAGGTCTGGGGAGGGTAGAGACTCTGCACTATCCGTTAAGTGTAAGCATACCTTCTTGGATAGTGCAGATATTCATAAATCGCGCTCTTGCTAATGATTTTAAAAGGAAGTCGTTTTAACTGTTTATTATAGTTAGAGTTCCCTGCACTGCAAGTCTAAAAGAAGCTCTCTTCTGTTCAGGATTGTTATACTGAACATGATGAGTTTATATCGTTCTGTTGTTTGTTTATCTAATGCATTATCCTATTTACATCGAGAAACAAAAAAACAATTGAAACGAAAATGAAAGCATAACATCTTGGTGTTCTGGTTTCATCCGTTTTATGTTTCTAAGCTTGTTTTGGAAGTGACATCAACCATTTACTAGCTTCACCATTCACCTACACATCTTAGGCTTGAGTGATATTCTAAAGGCTATTTGTAAAAGAAACTGAGAGTCTAAAACATTATATCAATTTACTTTGGGGTAAATTATGTATGCCCGATTGATGAAAGAAGTTCTTGTGATGTAGAGTTGTTGCTATGTATTCTACTCCTACCCCTTCAAAACCAAAAGAACAGAGTGTTAAAAGTAGTGAAATCAGGCAACCGAGGCTAGTAAACAACAGCTCGACTTACAATCTTCTATTATTCAGGTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAATAACGTCAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTACGAATTGCGCTACTTCAACATTGCTGAGAATGAAGCAGATGAAGAAGATTAAACATGACCATTCAATGTCTCTCTTTATCTTCTTTCTTTAGTCGGCCTTCACTTTTTGATCCTTGTATCATCACTAATGAATCCTGTCTTCTCATTTCTAGATTTTGTTTTTGCAGTTTGCTTATCAGTAAAAGAAAACATTACATCGATACTTTGGTTTGTCTATCTTTGGGGATAATTATGAAAATGTCAATTTATCTGTATTGCCTTT</genome_strand>
        <mrna_strand>TTTAACAGAGTCACCACTTCCATACACTCACACTAGGCCGTGGACGTCGAGTTTCATCCT........................................................................................CAGAAGAGAAATACAGAGAGTGTAAAGATGAGCCGAGCAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATTGACTGTTCGAAGCCGGTAGAAGACAGTATCATGGAGATTGCTTCTCTTGACAAGTTCCTTCAAGAGAGGATTAAGGTTGGTGGAAAAGCTGGTGCTCTTGGGGATTCCGTTACTGTTACTCGTGACAAGAACAAGATCACCGTCACCTGCAACTCAACTTTTTCCAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAATAACGTCAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTACGAATTGCGCTACTTCAACATTGCTGAGAATGAAGCAGATGAAGAAGATTAAACATGACCATTCAATGTCTCTCTTTATCTTCTTTCTTTAGTCGGCCTTCACTTTTTGATCCTTGTATCATCACTAATGAATCCTGTCTTCTCATTTCTAGATTTTGTTTTTGCAGTTTGCTTATCAGTAAAAGAAAACATTACATCGATACTTTGGTTTGTCTATCTTTGGGGATAATTATGAAAATGTCAATTTATCTGTATTGCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335499" ref_strand="+" ref_description="SGN-U335499        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | 60S ribosomal protein L22-2 (RPL22B), identical to 60S ribosomal protein L22-2 SP:Q9M9W1 from (Arabidopsis thaliana) | chr3:1614201-1615488 FORWARD | Aliases: F18C1.17, F18C1_17(evalue: 5e-31, score=132) genbank/nr: Ribosomal(evalue: 3e-30, score=135)">
      <seq>cgcgtgtttcatcctaagagaaatacagagagtgtaaagatgagccgagcagtagcagcagcagtgaagggtggaaagaagaagggggcgagcttcgtcattgactgttcgaagccggtagaagacagtatcatggagattgcttctcttgacaagttccttcaagagaggattaaggttggtggaaaagctggtgctcttggggattccgttactgttactcgtgacaagaacaagatcaccgtcacctgcaactcagctttttccaagaggtacctcaaataccttgtcaaaaagtacttgaagaaaaataacgtcagggattggcttagggtgattgcttccaacaaggacaggaatgtttacgaattgcgctacttcaacattgctgagaatgaagcagatgaagaagattaaacatgaccattcaatgtctctctttatcttcttctttagtcggccttcactttttgatccttgtatcatctgttcgagttactaatgaatcctgtcttctcatttctagattttgtttttgcagtttgcttatcagtaaaagaaaacattacatcgatactttggtttgtctatctttggggttaattatgaaaatgtcaatttatctgtattgcctttctcctctggatgatctcaagacatatgtaagattaaaatagatataatatctcataattaattaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="+" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="111401" stop="115174"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111600" g_stop="111615" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="0.875"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111616" i_stop="111706" i_length="91">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.808" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111707" g_stop="111963" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="272" r_length="257" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111964" i_stop="114456" i_length="2493">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114457" g_stop="114871" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="696" r_length="424" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="700" polyA_stop="713"/>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="+" ref_id="SGN-U335499" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335499" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111600" e_stop="111615"/>
          <exon e_start="111707" e_stop="111963"/>
          <exon e_start="114457" e_stop="114871"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTCGAGTTTCATCCTGTACGTATGCTCCTACTCTTTTCTTCTCTGTTTCTCTGACGATGAGATTTGTTCTTGAGATCTGATAATTTTTGCTTTTGAATGCCAGCAGAAGAGAAATACAGAGAGTGTAAAGATGAGCCGAGCAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATTGACTGTTCGAAGCCGGTAGAAGACAGTATCATGGAGATTGCTTCTCTTGACAAGTTCCTTCAAGAGAGGATTAAGGTTGGTGGAAAAGCTGGTGCTCTTGGGGATTCCGTTACTGTTACTCGTGACAAGAACAAGATCACCGTCACCTGCAACTCAACTTTTTCCAAGAGGTACTGATTCTATTGCCTCATTTTCAGTTGTGTTTATTTGAAAAAAAAATGATTCTAGAAACTAAACTCTACTCGTAGATCATAAATTACTAGCTACAGTCGACTTCTATTATAGTTTGATAACGATTACACTTACCGATTGACAGTAACTTATCGCAGACCTATTCGATTATCCAGTGAGTTCTGTGTAGTCATTCACACATTAAGCTTTGACTCAGTTGGTAATCAGATAAATATATAGTTAATTTGATAAGTTTTTGATATTTGAATGATTAAATCCGACAAACAGAACCATTTTAGACCTACTCCTGTAGTTAAATGAACTATTTATTTAGGACATTATTCTCTCTTTTTTGGTGTTTATTTTTGTACTAGAGGACGGGCTTCGCACGTGTATTTTATGTGAATTTTTATAGATATGTTATAATGATAAAAATTTCATGGAAATATATATGTAAATTAATGAATAATATAATGTAACAATTACAAAATAAGAATAAAGACTTACGCAATAAAATATTCATAAAAAAACTAAATTAAGAAGTCTGATGGTGATAAAAATAAAAGACAAAAAAAAGACAGATTTAAGAATGATCCAATGTAAACAATGTTCTTATAAGACTGATGTATGTATAGATGAAAAAAATAAGTACATAACTCTCTGAGTTCTTATCGACTCCTTTCATATCCTATCAAAATTCAAGAGGTTTCTTCATCTACTTTAACTATTGAATGAAAATGATAGCCTAGTAATCTTGGTAGGGGTTTCATGAGATTAAAAAAGTTGAATTTATATAGATAGAATAGAAGGAATATCAAAAGATATATTAAAGTTTTAGTTTAAATATTTGGAGGTTATGAATATGAAAAGATGAGAGTTATGAATATTAAGAGTATAAAGTTGAATAAGTAATTAACAAATAATAATAAATAAATGAAGAATATGAAAAAAGAAGTTAAAATTAGCAAACCATGTAGAAAGAACAACTAAAGGTCTTATCACGTAATTAAGCGTTAATAAATTTAGATTTGTGAAGATAGAGTCATTCTTTAATAATAATCGAGAGGACATTATCAACGTGTGTCTCCATTTTGCAGATTTGCACCCTTTATATTATTAAATTCGTTATTTATCATAAAGGATAATACTTTATCCACATAAATTATATTATTCATGAGAGGGGTTAAGGAAAAAGTTATGAGAAAGAGGAAAAATATAGCAATTTAGTAAAGACTTTTTTTTTAAAAAAAAATTATAATTATTATATACATATAGATTATAGATGATAAATATTAATTAATTGGATATTTAATTAGAAATCAATCTTTAGAAGTCTAAAAGTCATTAACCTTTTAATTAAATTTATACAATCAAATATTTAAATATTTTATAACAATTTAATTTATAGGAGGGGTAAAACTGTAATTCAACTTTCAACTTTTTTTGTTGATGCTTTTAGTAATACATGATGAATTAAGAGTGCCCAGACTTGAAGCACAGTTCCACTCTGGATTTATCACTGTTTATTTATCCAAAAACACTATCCTGTTTACATTGGGAAATCAGTAGAAACAGAATGACTAAAACAGCAGTGTGTTCTAAGTTCGCATGATCGTTGAAGCCTTTACTAAGCTTATGGTACAGATAGTCTATATGCTTTATGATTAAGCAACTATGTCTGGGTCCCAAATTAGAAGTCAGGGTTGGCTTTTATTGGAGTTTGATTGTTTTTACAACTGACAGTCTGATATTAACTTATTCATAGCTTCTTTTATTTTGGCTCGTCTCTGCTTTACAAAGATTTCTTATTTGGATAGTGCAACAGCAACAACACCATACCCCATGTAACCCACAAGTGAGGTCTGGGGAGGGTAGAGACTCTGCACTATCCGTTAAGTGTAAGCATACCTTCTTGGATAGTGCAGATATTCATAAATCGCGCTCTTGCTAATGATTTTAAAAGGAAGTCGTTTTAACTGTTTATTATAGTTAGAGTTCCCTGCACTGCAAGTCTAAAAGAAGCTCTCTTCTGTTCAGGATTGTTATACTGAACATGATGAGTTTATATCGTTCTGTTGTTTGTTTATCTAATGCATTATCCTATTTACATCGAGAAACAAAAAAACAATTGAAACGAAAATGAAAGCATAACATCTTGGTGTTCTGGTTTCATCCGTTTTATGTTTCTAAGCTTGTTTTGGAAGTGACATCAACCATTTACTAGCTTCACCATTCACCTACACATCTTAGGCTTGAGTGATATTCTAAAGGCTATTTGTAAAAGAAACTGAGAGTCTAAAACATTATATCAATTTACTTTGGGGTAAATTATGTATGCCCGATTGATGAAAGAAGTTCTTGTGATGTAGAGTTGTTGCTATGTATTCTACTCCTACCCCTTCAAAACCAAAAGAACAGAGTGTTAAAAGTAGTGAAATCAGGCAACCGAGGCTAGTAAACAACAGCTCGACTTACAATCTTCTATTATTCAGGTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAATAACGTCAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTACGAATTGCGCTACTTCAACATTGCTGAGAATGAAGCAGATGAAGAAGATTAAACATGACCATTCAATGTCTCTCTTTATCTTCTTTCTTTAGTCGGCCTTCACTTTTTGATCCTTGTATCA-----TC-----ACTAATGAATCCTGTCTTCTCATTTCTAGATTTTGTTTTTGCAGTTTGCTTATCAGTAAAAGAAAACATTACATCGATACTTTGGTTTGTCTATCTTTGGGGATAATTATGAAAATGTCAATTTATCTGTATTGCCTTTCTCCTCTGGATGATCTCAAGACATATATAAGATTAAAATAGATATAATATCTCATAATTA</genome_strand>
        <mrna_strand>CG-CGTGTTTCATCCT...........................................................................................AAGAGAAATACAGAGAGTGTAAAGATGAGCCGAGCAGTAGCAGCAGCAGTGAAGGGTGGAAAGAAGAAGGGGGCGAGCTTCGTCATTGACTGTTCGAAGCCGGTAGAAGACAGTATCATGGAGATTGCTTCTCTTGACAAGTTCCTTCAAGAGAGGATTAAGGTTGGTGGAAAAGCTGGTGCTCTTGGGGATTCCGTTACTGTTACTCGTGACAAGAACAAGATCACCGTCACCTGCAACTCAGCTTTTTCCAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAATAACGTCAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTACGAATTGCGCTACTTCAACATTGCTGAGAATGAAGCAGATGAAGAAGATTAAACATGACCATTCAATGTCTCTCTTTATCTTC-TTCTTTAGTCGGCCTTCACTTTTTGATCCTTGTATCATCTGTTCGAGTTACTAATGAATCCTGTCTTCTCATTTCTAGATTTTGTTTTTGCAGTTTGCTTATCAGTAAAAGAAAACATTACATCGATACTTTGGTTTGTCTATCTTTGGGGTTAATTATGAAAATGTCAATTTATCTGTATTGCCTTTCTCCTCTGGATGATCTCAAGACATATGTAAGATTAAAATAGATATAATATCTCATAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U315700" ref_strand="+" ref_description="SGN-U315700        Tomato 200607 #1 [37 ESTs aligned] arabidopsis/peptide: | Symbol: None | photolyase/blue light photoreceptor (PHR2), identical to photolyase/blue light photoreceptor PHR2 (Arabidopsis thaliana) GI:3319288; contains Pfam domain, PF00875: deoxyribodipyrimidine photolyase | chr2:19528867-19531133 FORWARD | Aliases: T30B22.11(evalue: 1e-151, score=533) genbank/nr: Deoxyribodipyrimidine(evalue: 2e-162, score=576)">
      <seq>ttttttttttttttttcttttcaaaaataatctctctattttagatagttatgttgacttttttaaatttcatatcgattcaaaatcagacaaataaattgactcgtacaaaaatttatccactcttaaattgatacatccacctctaccaacctctataaacacctcacccacctaacacaacaaataggcaaaaaaataaacatagtattattatattgacaccaactttaacaaaaccaacaaaattctttggagggtattaagccgtcgcttatcttcatcttcttcctctgattctgtacatttttctcaccggaaaactcatcagaaatggatccaaagaatcaattttccgataactcagaagcccaaacacctcaagaagaacaacagcagacacccattttaccgatagcttcaatttcacttgctttatccacaatccttccaacccatttccttaatcctcctaaaatctcaacccttttcaacaaaccaaacaaagtcaaaatcccaactcaagtttcatctcttacaaatctctcactttcagcttcttctcttccacctacaaattccaaattcaagtccactatttctgctaaccctcttcagaatactctaactcttaaccctcttcgtccttctgagccttctaatgctgctgggcttcgacgagcgtcgattgtttggttccgtaacgatcttcgtgttcatgataatgagtgtcttaacgcggctcataatgagtccatgtctgtattggctgtttactgttttgacccgagagattatggaaaatcctcatctgggtttgataaaactgggccgtatagggctagttttttgattgattctgttgctgaccttaggaagaatctacaggcaagagggtctgatcttgttgttagaattgggaagccggagactgtgttggtggaattagctaaagctgttggagctgaagctgtgtatgctcatagggaggtttcacatgatgaggttaaaggggaagataagattgatgctgtaatgaaggatgagggtttggaggtgaagtatttctggggtagtacattgtatcatgttgatgatttgccttttaagttggagcaaatgcctacgaattacggaggctttagggagaaagtgcagggattggaggtaaggaagacaattgaggcattggatcaattgaggggattgcctgctagaggtgatgtggaacctggggagattccttcgttggttgatttggggctcaatcctagtgccaccatgggtcagaatggaaaatcagctgctaatgcttcccttgtgggaggagagaatgaagcactgcaaagacttagaaaatttgcagcagaatgtcaggcccaacccagtaaggaaaacaaggatggcacaaatgacagcatatatggtgcaaacttttcttgcaaaatatcgccttggttagctatgggatgtctctcaccccgttccatgtttgatgaattgaagaagtccacttcaagaacgatttctgctgcctctgccaagaaagatggtggtagtggcactgggctgaactggctgatgtacgagctgttatggagggattttttcagattcatcaccaagaaatatagtgctgcaaaacaaaatagtgctgctccagtaactacttgcgtaggagctgctgcttaacgatggtatactcaaaaggagaatgaaggtttcctttttgtagcttgatttattttttccggaagtttagctgtggaatgttagagttggactgccattgaattgaagcattttttcttttgacaataagtgttgagacataaaagaatttgtcgccatttctagcaagtcgctctacaatccttcttatgctagtatttatatatttttgatttcatctgtagttgaaacaggtgtgataacaaacatacctgtagttgaaatatgtgttccatgtttgagattaccatccatcttgaacccgcggagagtatccttgagcatcagatgatttactattgatactcatttcaatgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0038L16-UxDbs/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0038L16.1" temp_strand="-" temp_description="C09HBa0038L16.1  EF692491.1 htgs_phase:1 submitted_to_sgn_as:C09HBa0038L16 upload_account_name:spain">
        <position start="120721" stop="116558"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120422" g_stop="119153" g_length="1270"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="1290" r_length="1271" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119152" i_stop="117854" i_length="1299">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117853" g_stop="117624" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1291" r_stop="1520" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117623" i_stop="117532" i_length="92">
            <donor d_prob="0.881" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117531" g_stop="117439" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1521" r_stop="1613" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117438" i_stop="117297" i_length="142">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117296" g_stop="116851" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="1614" r_stop="2059" r_length="446" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="19" polyA_stop="1"/>
      <MATCH_line gen_id="C09HBa0038L16.1" gen_strand="-" ref_id="SGN-U315700" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>2039</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0038L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U315700" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120422" e_stop="119153"/>
          <exon e_start="117853" e_stop="117624"/>
          <exon e_start="117531" e_stop="117439"/>
          <exon e_start="117296" e_stop="116851"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAAAATAATCTCTCTATTTTAGATAGTTAT-TTGATTTTCTTAAATTTCATATCGATTCAAAATCAGACAAATAAATTGACTCGTACAAAAATTTATCCACTCTTAAATTGATACATCCACCTCTACCAACCTCTATAAACACCTCACCCACCTAACACAACAAATAGGCAAAAAAATAAACATAGTATTATTATATTGACACCAACTTTAACAAAACCAACAAAATTCTTTGGAGGGTATTAAGCCGTCGCTTATCTTCATCTTCTTCCTCTGATTCTGTACATTTTTCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGCAGACACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTATTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGAAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGATTCTGTTGCTGACCTTAGGAAGAATCTACAGGCAAGAGGGTCTGATCTTGTTGTTAGAATTGGGAAGCCGGAGACTGTGTTGGTGGAATTAGCTAAAGCTGTTGGAGCTGAAGCTGTGTATGCTCATAGGGAGGTTTCACATGATGAGGTTAAAGGGGAAGATAAGATTGATGCTGTAATGAAGGATGAGGGTTTGGAGGTGAAGTATTTCTGGGGTAGTACATTGTATCATGTTGATGATTTGCCTTTTAAGTTGGAGCAAATGCCTACGAATTACGGAGGCTTTAGGGAGAAAGTGCAGGGATTGGAGGTAAGGAAGACAATTGAGGCATTGGATCAATTGAGGGGATTGCCTGCTAGAGGTGATGTGGAACCTGGGGAGATTCCTTCGTTGGTTGATTTGGGGCTCAATCCTAGTGCCACCATGGGTCAGGTATTACTTTGTTCGATCTCAAATATCGTAGAGGATTTAGGTTTATTCAGTATTGGATGAAAGTAGTTTTACCTTTGATGTCAAAGAACTTGTAATTTAACTGAAATGACATATTTGCGAGTGTTGGAATGAAACTGGTGTAAATGTAGTGTAACCGATAATAAGGATGATTCATATAGTTGAACCCAACAAGTTTGAGATTGAGCTACACTAGTAGTCCTTTAGTTTCACGTAGTTTTCCGTTTCTTAGACACTTCATTGGAAGTGGTAGAGATGATCAAGATTCCATTTTTATACGAATGGAAGTGATTCAAGTCAGAAATAACTGATGGTTTAATTCAACATATCTCTTGTATATGTATTCTGAACATTTGTTAGATAAAACCACATGTTTTAAGTAGGTTTAGTATTTGGCGTTTGAACATCAGTAATTTAAATGATCCTTGCTCTATCGTGTAGTGTCCTTCTATAGTTGTGTGCAGTGTTCAGGAAAGCAAGGCGAAGCAATGCGAGCCTTCTACGCTTCACAAACTAGAATGAGTATGTGAGTGCTTCATCGCCTAAAGCGTGAAGCAGGGCCTTATCACTTTTTTCCACTTCCTACTTCCCTGAACACTGGTTGTGTACACTGAGTATCCAGCTCATAGCTGTGACATTTTGTTGATCAATATGTTAATGTACTTCTTATCAGGCCGTCACCAACTAGGACACTACACACCAACTATAGTGCTCATAGAATAGACCAAAGAACTCTTATTTGTTAGCCTGAGAATATGTAATGTAGAAAGAACATCTTTTAGCCACGTTTGGAGGTTACTTTTTTAGTATTGCCTGTAGCACAGGCCACAGTGCACAATCACTTAAGAACTGTTGCTTGAATTTTGTAATTGCCTTACTGTATTGTAACTTTGGAACTGTAAGTTGTTTCACATCACAAACTAGTCAAACAAAGTTTATTTGTTTCAGTTACTTTGCAAACTATGGCAAACATGAACATTTCTTTATCTTTGCATAATCATTTGCATTTGCACATCATTTAGAATGACTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAGAGACTTCAATTTTGTAGTTGCCATACTGTATTTTTCACCGACTTGAATTTTGTAATTGCTGTACTGTATTTAAACTTTCGGAGTTGTCAGTTGTTTAACATCACAAACTAGTCAAAAAAAGTTGATTCATTTCAGTTATTTCGCTAACTATTGTAAACATGAACATTTCTTTATCTTGGTATACTTAATCATTTGCATTTGCCAACCATTTAGAATGGAAAATCAGCTGCTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAAAGACTTAGAAAATTTGCAGCAGAATGTCAGGCCCAACCCAGTAAGGAAAACAAGGATGGCACAAATGACAGCATATATGGTGCAAACTTTTCTTGCAAAATATCGCCTTGGTTAGCTATGGGATGTCTCTCACCCCGTTCCATGTTTGATGAATTGAAGAAGTCCACTTCAAGGTTAATGTCTTGTCAATAGTTTTCTTATCCTGATACTAATGCCTGTGAGACCAATATCACTGGCTAACGCTACATTGGTTGTTGTGCTGCAGAACGATTTCTGCTGCCTCTGCCAAGAAAGATGGTGGTAGTGGCACTGGGCTGAACTGGCTGATGTACGAGCTGTTATGGAGGGATTTTTTCAGGTAATTTAGCATGCAACTTAGCTCCTATGATTGAGATGCTTGTTTCAGTTTCGTATAGTGTGATACTCGTTCCATCCTTTATGAAACAATTCCCGTCCTTTAAAATTATTCCTTGGATAACATTCTGTTTTCTGAATGCCAGATTCATCACCAAGAAATATAGTGCTGCAAAACAAAATAGTGCTGCTCCAGTAACTACTTGCGTAGGAGCTGCTGCTTAACGATGGTATACTCAAAAGGAGAATGAAGGTTTCCTTTTTGTAGCTTGATTTATTTTTTCCGGAAGTTTAGCTGTGGAATGTTAGAGTTGGACTGCCATTGAATTGAAGCATTTTTTCTTTTGACAATAAGTGTTGAGACATAAAAGAATTTGTCGCCATTTCTAGCAAGTCGCTCTACAATCCTTCTTATGCTAGTATTTATATATTTTTGATTTCATCTGTAGTTGAAACAGGTGTGATAACAAACATACCTGTAGTTGAAATATGTGTTCCATGTTTGAGATTACCATCCATCTTGAACCCGCGGAGAGTATCCTTGAGCATCAGATGATTTACTATTGATACTCATTTCAATGTAAACTAGTTC</genome_strand>
        <mrna_strand>TTCAAAAATAATCTCTCTATTTTAGATAGTTATGTTGACTTTTTTAAATTTCATATCGATTCAAAATCAGACAAATAAATTGACTCGTACAAAAATTTATCCACTCTTAAATTGATACATCCACCTCTACCAACCTCTATAAACACCTCACCCACCTAACACAACAAATAGGCAAAAAAATAAACATAGTATTATTATATTGACACCAACTTTAACAAAACCAACAAAATTCTTTGGAGGGTATTAAGCCGTCGCTTATCTTCATCTTCTTCCTCTGATTCTGTACATTTTTCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGCAGACACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTATTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGAAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGATTCTGTTGCTGACCTTAGGAAGAATCTACAGGCAAGAGGGTCTGATCTTGTTGTTAGAATTGGGAAGCCGGAGACTGTGTTGGTGGAATTAGCTAAAGCTGTTGGAGCTGAAGCTGTGTATGCTCATAGGGAGGTTTCACATGATGAGGTTAAAGGGGAAGATAAGATTGATGCTGTAATGAAGGATGAGGGTTTGGAGGTGAAGTATTTCTGGGGTAGTACATTGTATCATGTTGATGATTTGCCTTTTAAGTTGGAGCAAATGCCTACGAATTACGGAGGCTTTAGGGAGAAAGTGCAGGGATTGGAGGTAAGGAAGACAATTGAGGCATTGGATCAATTGAGGGGATTGCCTGCTAGAGGTGATGTGGAACCTGGGGAGATTCCTTCGTTGGTTGATTTGGGGCTCAATCCTAGTGCCACCATGGGTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAAATCAGCTGCTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAAAGACTTAGAAAATTTGCAGCAGAATGTCAGGCCCAACCCAGTAAGGAAAACAAGGATGGCACAAATGACAGCATATATGGTGCAAACTTTTCTTGCAAAATATCGCCTTGGTTAGCTATGGGATGTCTCTCACCCCGTTCCATGTTTGATGAATTGAAGAAGTCCACTTCAAG............................................................................................AACGATTTCTGCTGCCTCTGCCAAGAAAGATGGTGGTAGTGGCACTGGGCTGAACTGGCTGATGTACGAGCTGTTATGGAGGGATTTTTTCAG..............................................................................................................................................ATTCATCACCAAGAAATATAGTGCTGCAAAACAAAATAGTGCTGCTCCAGTAACTACTTGCGTAGGAGCTGCTGCTTAACGATGGTATACTCAAAAGGAGAATGAAGGTTTCCTTTTTGTAGCTTGATTTATTTTTTCCGGAAGTTTAGCTGTGGAATGTTAGAGTTGGACTGCCATTGAATTGAAGCATTTTTTCTTTTGACAATAAGTGTTGAGACATAAAAGAATTTGTCGCCATTTCTAGCAAGTCGCTCTACAATCCTTCTTATGCTAGTATTTATATATTTTTGATTTCATCTGTAGTTGAAACAGGTGTGATAACAAACATACCTGTAGTTGAAATATGTGTTCCATGTTTGAGATTACCATCCATCTTGAACCCGCGGAGAGTATCCTTGAGCATCAGATGATTTACTATTGATACTCATTTCAATGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>22</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="2985" PGL_stop="1178"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2985" e_stop="2538"/>
            <exon e_start="1612" e_stop="1368"/>
            <exon e_start="1288" e_stop="1178"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.979" acc_prob="0.511" e_score="0.982"/>
          <exon-intron don_prob="0.995" acc_prob="0.977" e_score="1.000"/>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="2985" e_stop="2538" e_length="448"/>
          </exon>
          <intron i_serial="1" don_prob="0.979" acc_prob="0.511">
            <gDNA_intron_boundary i_start="2537" i_stop="1613" i_length="925"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="1612" e_stop="1368" e_length="245"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.977">
            <gDNA_intron_boundary i_start="1367" i_stop="1289" i_length="79"/>
          </intron>
          <exon e_serial="3" e_score="0.982">
            <gDNA_exon_boundary e_start="1288" e_stop="1178" e_length="111"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2985" stop="2538"/>
              <exon start="1612" stop="1368"/>
              <exon start="1288" stop="1178"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U329295" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGTGAATTTCTCTGATTTTTTTTTTTCAAATTAATTAATTTGTGATCATCACAATTGTCATGTGTAAGTGATTCCGCCATTAAAGGATACAGATATAGTCAGTGTTTCCGCCATTAAAGTAGATAAACAGTGAGGAAAAACAAACGGAGATTTTTCAGTATTTTTTTTTTCACTATTAAGTGCTCGCAGTTTGTTTGTTTGTTTTTTGGGAAAATTCTCAGATTTGGAACAATTTTTTGAATTTTGGAAATGAAGTTTTGTAAGAAATATGAGGAGTATATGGAAGGGCAATGCCGGAATAAGAAGTTGCCGCGGGTAGGTTTGAAGAAATTGAAGAAAATTTTGAAGAGATGTCGAAAATGTCATCAATCACGAAGTGTTGTTGGTCTGTCTGGAGATAACAATATTGTTCATGATAGCTCCAGTTGCTCGCAGCATCAATGCTCTG : TTTGTGATGGAAGTTTTTTTCCATCTCTCCTTAAGGAGATGTCTGAAGTGGTTGGCAGCTTCAATAAACGTGCGCAGAAATTGCTTGAACTGCATCTCTCATCAGGTTTCCGCAAATATCTTATCTTGCTCAAAGAAAAAATTCAAGGAAACCATATTGCTTTAGTTCAAGAAGGAAAAGATCTAGTCACCTATGCTATAATCAACGCAATTGCCGTGCGTAAAATACTTAAGAAATATGACAAG : ATTCACTATTCTAAGCAAGGCCAGGCATTCAAGTCACAAGCTCAAAGTATGCACATTGAGATCCTTCAGTCCCCCTGGCTGTGTGAACTTATGGCTTTTCACATCAATTTG</gDNA_template>
            <first_frame> R  E  F  L  *  F  F  F  F  K  L  I  N  L  *  S  S  Q  L  S  C  V  S  D  S  A  I  K  G  Y  R  Y  S  Q  C  F  R  H  *  S  R  *  T  V  R  K  N  K  R  R  F  F  S  I  F  F  F  T  I  K  C  S  Q  F  V  C  L  F  F  G  K  I  L  R  F  G  T  I  F  *  I  L  E  M  K  F  C  K  K  Y  E  E  Y  M  E  G  Q  C  R  N  K  K  L  P  R  V  G  L  K  K  L  K  K  I  L  K  R  C  R  K  C  H  Q  S  R  S  V  V  G  L  S  G  D  N  N  I  V  H  D  S  S  S  C  S  Q  H  Q  C  S   : V  C  D  G  S  F  F  P  S  L  L  K  E  M  S  E  V  V  G  S  F  N  K  R  A  Q  K  L  L  E  L  H  L  S  S  G  F  R  K  Y  L  I  L  L  K  E  K  I  Q  G  N  H  I  A  L  V  Q  E  G  K  D  L  V  T  Y  A  I  I  N  A  I  A  V  R  K  I  L  K  K  Y  D  K  :  I  H  Y  S  K  Q  G  Q  A  F  K  S  Q  A  Q  S  M  H  I  E  I  L  Q  S  P  W  L  C  E  L  M  A  F  H  I  N  L </first_frame>
            <second_frame>  V  N  F  S  D  F  F  F  S  N  *  L  I  C  D  H  H  N  C  H  V  *  V  I  P  P  L  K  D  T  D  I  V  S  V  S  A  I  K  V  D  K  Q  *  G  K  T  N  G  D  F  S  V  F  F  F  S  L  L  S  A  R  S  L  F  V  C  F  L  G  K  F  S  D  L  E  Q  F  F  E  F  W  K  *  S  F  V  R  N  M  R  S  I  W  K  G  N  A  G  I  R  S  C  R  G  *  V  *  R  N  *  R  K  F  *  R  D  V  E  N  V  I  N  H  E  V  L  L  V  C  L  E  I  T  I  L  F  M  I  A  P  V  A  R  S  I  N  A  L  :  F  V  M  E  V  F  F  H  L  S  L  R  R  C  L  K  W  L  A  A  S  I  N  V  R  R  N  C  L  N  C  I  S  H  Q  V  S  A  N  I  L  S  C  S  K  K  K  F  K  E  T  I  L  L  *  F  K  K  E  K  I  *  S  P  M  L  *  S  T  Q  L  P  C  V  K  Y  L  R  N  M  T  R :   F  T  I  L  S  K  A  R  H  S  S  H  K  L  K  V  C  T  L  R  S  F  S  P  P  G  C  V  N  L  W  L  F  T  S  I   </second_frame>
            <third_frame>   *  I  S  L  I  F  F  F  Q  I  N  *  F  V  I  I  T  I  V  M  C  K  *  F  R  H  *  R  I  Q  I  *  S  V  F  P  P  L  K  *  I  N  S  E  E  K  Q  T  E  I  F  Q  Y  F  F  F  H  Y  *  V  L  A  V  C  L  F  V  F  W  E  N  S  Q  I  W  N  N  F  L  N  F  G  N  E  V  L  *  E  I  *  G  V  Y  G  R  A  M  P  E  *  E  V  A  A  G  R  F  E  E  I  E  E  N  F  E  E  M  S  K  M  S  S  I  T  K  C  C  W  S  V  W  R  *  Q  Y  C  S  *  *  L  Q  L  L  A  A  S  M  L  C :   L  *  W  K  F  F  S  I  S  P  *  G  D  V  *  S  G  W  Q  L  Q  *  T  C  A  E  I  A  *  T  A  S  L  I  R  F  P  Q  I  S  Y  L  A  Q  R  K  N  S  R  K  P  Y  C  F  S  S  R  R  K  R  S  S  H  L  C  Y  N  Q  R  N  C  R  A  *  N  T  *  E  I  *  Q   : D  S  L  F  *  A  R  P  G  I  Q  V  T  S  S  K  Y  A  H  *  D  P  S  V  P  L  A  V  *  T  Y  G  F  S  H  Q  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0038L16.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2745" stop="2538"/>
                    <exon start="1612" stop="1368"/>
                    <exon start="1288" stop="1178"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>564</number_coding_nucleotides>
                  <number_encoded_amino_acids>188</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILEMKFCKKYEEYMEGQCRNKKLPRVGLKKLKKILKRCRKCHQSRSVVGLSGDNNIVHDSSSCSQHQCSVCDGSFFPSLLKEMSEVVGSFNKRAQKLLELHLSSGFRKYLILLKEKIQGNHIALVQEGKDLVTYAIINAIAVRKILKKYDKIHYSKQGQAFKSQAQSMHIEILQSPWLCELMAFHINL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="39745" PGL_stop="40470"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39745" e_stop="40470"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.953"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.953">
            <gDNA_exon_boundary e_start="39745" e_stop="40470" e_length="726"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39745" stop="40229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U346798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40170" stop="40470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344877" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCACCCACAATACACCCGCAACCACCACCCACACTAACAACCAACCCGAACCACCCCCATACCCACAACATCTCCAGCCCGATCCGTTTTGGGTCCTTCCCGGCCACCCGAATAACCACCGCCCGTGCCACCCCCCAATACTCATCCCATGTTAACCCGTGTCAAAGCCGGTATCTTTAAATCCAAAACCTTTCAGGCTACCATACTACCAAATACACCCCTTCCCGATAGTGAACCAACAACCTACTCTGTTGCCTCAAAAAATGCTTATTGGCGTCATGCTATGGATGACGAGTTTAAGGCTTTTACTGATTAGAAAACTTGGGTTCTTGTACCTAAGCCCCATGGGCGGCACCCAGTGGGCTGTAAATGGGTCTACAAAATTAAACACAATGCAAATGGCAGTATTTCCAGGTACAAGGCTCGTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGGCTTGATTACTCTGAGACATTCAGTCCTGTTATTCGGCAGGAAACCATTCGCCTGGTACTGTCACTCGTTGTGCGCAACAATTGGCTCATCAATCAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGCTTGATGAAACTATCTACATGACGCAACCACCGGGCTATGTTGATCCCCGCTTCCCTAAACATGTTTGTAAACTCCAGAAGTCTCTGTATGGGCTCAAGCAAGCCCCCCGTGCTTGGTACACACGTCTTAAAATGTT</gDNA_template>
            <first_frame> S  P  T  I  H  P  Q  P  P  P  T  L  T  T  N  P  N  H  P  H  T  H  N  I  S  S  P  I  R  F  G  S  F  P  A  T  R  I  T  T  A  R  A  T  P  Q  Y  S  S  H  V  N  P  C  Q  S  R  Y  L  *  I  Q  N  L  S  G  Y  H  T  T  K  Y  T  P  S  R  *  *  T  N  N  L  L  C  C  L  K  K  C  L  L  A  S  C  Y  G  *  R  V  *  G  F  Y  *  L  E  N  L  G  S  C  T  *  A  P  W  A  A  P  S  G  L  *  M  G  L  Q  N  *  T  Q  C  K  W  Q  Y  F  Q  V  Q  G  S  F  G  C  *  R  L  Q  S  G  V  W  A  *  L  L  *  D  I  Q  S  C  Y  S  A  G  N  H  S  P  G  T  V  T  R  C  A  Q  Q  L  A  H  Q  S  V  G  C  F  Q  C  F  S  S  W  H  A  *  *  N  Y  L  H  D  A  T  T  G  L  C  *  S  P  L  P  *  T  C  L  *  T  P  E  V  S  V  W  A  Q  A  S  P  P  C  L  V  H  T  S  *  N  V </first_frame>
            <second_frame>  H  P  Q  Y  T  R  N  H  H  P  H  *  Q  P  T  R  T  T  P  I  P  T  T  S  P  A  R  S  V  L  G  P  S  R  P  P  E  *  P  P  P  V  P  P  P  N  T  H  P  M  L  T  R  V  K  A  G  I  F  K  S  K  T  F  Q  A  T  I  L  P  N  T  P  L  P  D  S  E  P  T  T  Y  S  V  A  S  K  N  A  Y  W  R  H  A  M  D  D  E  F  K  A  F  T  D  *  K  T  W  V  L  V  P  K  P  H  G  R  H  P  V  G  C  K  W  V  Y  K  I  K  H  N  A  N  G  S  I  S  R  Y  K  A  R  L  V  A  K  G  Y  N  Q  E  Y  G  L  D  Y  S  E  T  F  S  P  V  I  R  Q  E  T  I  R  L  V  L  S  L  V  V  R  N  N  W  L  I  N  Q  L  D  V  S  N  A  F  L  H  G  M  L  D  E  T  I  Y  M  T  Q  P  P  G  Y  V  D  P  R  F  P  K  H  V  C  K  L  Q  K  S  L  Y  G  L  K  Q  A  P  R  A  W  Y  T  R  L  K  M   </second_frame>
            <third_frame>   T  H  N  T  P  A  T  T  T  H  T  N  N  Q  P  E  P  P  P  Y  P  Q  H  L  Q  P  D  P  F  W  V  L  P  G  H  P  N  N  H  R  P  C  H  P  P  I  L  I  P  C  *  P  V  S  K  P  V  S  L  N  P  K  P  F  R  L  P  Y  Y  Q  I  H  P  F  P  I  V  N  Q  Q  P  T  L  L  P  Q  K  M  L  I  G  V  M  L  W  M  T  S  L  R  L  L  L  I  R  K  L  G  F  L  Y  L  S  P  M  G  G  T  Q  W  A  V  N  G  S  T  K  L  N  T  M  Q  M  A  V  F  P  G  T  R  L  V  W  L  L  K  A  T  I  R  S  M  G  L  I  T  L  R  H  S  V  L  L  F  G  R  K  P  F  A  W  Y  C  H  S  L  C  A  T  I  G  S  S  I  S  W  M  F  P  M  L  F  F  M  A  C  L  M  K  L  S  T  *  R  N  H  R  A  M  L  I  P  A  S  L  N  M  F  V  N  S  R  S  L  C  M  G  S  S  K  P  P  V  L  G  T  H  V  L  K  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0038L16.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39900" stop="40355"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>453</number_coding_nucleotides>
                  <number_encoded_amino_acids>151</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PVSKPVSLNPKPFRLPYYQIHPFPIVNQQPTLLPQKMLIGVMLWMTSLRLLLIRKLGFLYLSPMGGTQWAVNGSTKLNTMQMAVFPGTRLVWLLKATIRSMGLITLRHSVLLFGRKPFAWYCHSLCATIGSSISWMFPMLFFMACLMKLST*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0038L16.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40061" stop="40468"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>408</number_coding_nucleotides>
                  <number_encoded_amino_acids>136</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KTWVLVPKPHGRHPVGCKWVYKIKHNANGSISRYKARLVAKGYNQEYGLDYSETFSPVIRQETIRLVLSLVVRNNWLINQLDVSNAFLHGMLDETIYMTQPPGYVDPRFPKHVCKLQKSLYGLKQAPRAWYTRLKM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="45187" PGL_stop="45904"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45187" e_stop="45904"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="45187" e_stop="45904" e_length="718"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45187" stop="45904"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U328531" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATTTGAATCCATAAAGAAATGATCCAATTAATCCCGATACAAAATGAGAATCGTATGGATGCGATTTTGCATTTCTCGACAAATAAAATGTAGTTTGGTGTTTTAAGCGGGTAATCAATTTTGGGTAAGGAAAAACGTGTCATTCTTACTTAACTCTTGGTTTAGGAATTCCTTATATAACTTAAATGACACAGCAAAAGCGATAAAATACAACCTCAAAATCACACATAGACTACTCGTAAATAATAATTTTAAGAAACATAGTAGAACATGAATTGTTGTATATTGCTATTTTCTTCATGTAGGAGGACACAATATTCCAATAAAATAATGAAATCGTAAGAAAGTACATCAACATATTTAAAAAGGAAATATATAATACTTAGGAAGGAAAGAAAGAAGCGGATAAAAAGAAAAAGAAAATTACTGCACATACAAAATGATCAGCAAAGTTCATTCATTTTTGCATGATAATCTCTCATCGAGTCTTGTCATTTCCATGAAGATCATGCTAGGCAATTTATAGAAATAGCAATTTATAGAAATGCTAGGCAATTAATAATGATTTTAGTCCATATCAAATTTGTATAATGAAAAAACTTTTCAAATACTTATACAATAGAGTAATTAATTAATAAAGTAAACTTGATTCATGCACCAATCTAAATGAGTTATTTATTAAATATTTAATTATATTTTATAATATTTGTTTAATTA</gDNA_template>
            <first_frame> D  L  N  P  *  R  N  D  P  I  N  P  D  T  K  *  E  S  Y  G  C  D  F  A  F  L  D  K  *  N  V  V  W  C  F  K  R  V  I  N  F  G  *  G  K  T  C  H  S  Y  L  T  L  G  L  G  I  P  Y  I  T  *  M  T  Q  Q  K  R  *  N  T  T  S  K  S  H  I  D  Y  S  *  I  I  I  L  R  N  I  V  E  H  E  L  L  Y  I  A  I  F  F  M  *  E  D  T  I  F  Q  *  N  N  E  I  V  R  K  Y  I  N  I  F  K  K  E  I  Y  N  T  *  E  G  K  K  E  A  D  K  K  K  K  K  I  T  A  H  T  K  *  S  A  K  F  I  H  F  C  M  I  I  S  H  R  V  L  S  F  P  *  R  S  C  *  A  I  Y  R  N  S  N  L  *  K  C  *  A  I  N  N  D  F  S  P  Y  Q  I  C  I  M  K  K  L  F  K  Y  L  Y  N  R  V  I  N  *  *  S  K  L  D  S  C  T  N  L  N  E  L  F  I  K  Y  L  I  I  F  Y  N  I  C  L  I  </first_frame>
            <second_frame>  I  *  I  H  K  E  M  I  Q  L  I  P  I  Q  N  E  N  R  M  D  A  I  L  H  F  S  T  N  K  M  *  F  G  V  L  S  G  *  S  I  L  G  K  E  K  R  V  I  L  T  *  L  L  V  *  E  F  L  I  *  L  K  *  H  S  K  S  D  K  I  Q  P  Q  N  H  T  *  T  T  R  K  *  *  F  *  E  T  *  *  N  M  N  C  C  I  L  L  F  S  S  C  R  R  T  Q  Y  S  N  K  I  M  K  S  *  E  S  T  S  T  Y  L  K  R  K  Y  I  I  L  R  K  E  R  K  K  R  I  K  R  K  R  K  L  L  H  I  Q  N  D  Q  Q  S  S  F  I  F  A  *  *  S  L  I  E  S  C  H  F  H  E  D  H  A  R  Q  F  I  E  I  A  I  Y  R  N  A  R  Q  L  I  M  I  L  V  H  I  K  F  V  *  *  K  N  F  S  N  T  Y  T  I  E  *  L  I  N  K  V  N  L  I  H  A  P  I  *  M  S  Y  L  L  N  I  *  L  Y  F  I  I  F  V  *  L </second_frame>
            <third_frame>   F  E  S  I  K  K  *  S  N  *  S  R  Y  K  M  R  I  V  W  M  R  F  C  I  S  R  Q  I  K  C  S  L  V  F  *  A  G  N  Q  F  W  V  R  K  N  V  S  F  L  L  N  S  W  F  R  N  S  L  Y  N  L  N  D  T  A  K  A  I  K  Y  N  L  K  I  T  H  R  L  L  V  N  N  N  F  K  K  H  S  R  T  *  I  V  V  Y  C  Y  F  L  H  V  G  G  H  N  I  P  I  K  *  *  N  R  K  K  V  H  Q  H  I  *  K  G  N  I  *  Y  L  G  R  K  E  R  S  G  *  K  E  K  E  N  Y  C  T  Y  K  M  I  S  K  V  H  S  F  L  H  D  N  L  S  S  S  L  V  I  S  M  K  I  M  L  G  N  L  *  K  *  Q  F  I  E  M  L  G  N  *  *  *  F  *  S  I  S  N  L  Y  N  E  K  T  F  Q  I  L  I  Q  *  S  N  *  L  I  K  *  T  *  F  M  H  Q  S  K  *  V  I  Y  *  I  F  N  Y  I  L  *  Y  L  F  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0038L16.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="56164" PGL_stop="51148"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56164" e_stop="55985"/>
            <exon e_start="54402" e_stop="54339"/>
            <exon e_start="53905" e_stop="53850"/>
            <exon e_start="53781" e_stop="53706"/>
            <exon e_start="53607" e_stop="53536"/>
            <exon e_start="53425" e_stop="53338"/>
            <exon e_start="53234" e_stop="52976"/>
            <exon e_start="52899" e_stop="52784"/>
            <exon e_start="52685" e_stop="52465"/>
            <exon e_start="52250" e_stop="52222"/>
            <exon e_start="52131" e_stop="52038"/>
            <exon e_start="51921" e_stop="51831"/>
            <exon e_start="51485" e_stop="51148"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.733" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="0.910" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.954" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.950" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.774" e_score="1.000"/>
          <exon-intron don_prob="0.802" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.314" acc_prob="0.762" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.951" e_score="1.000"/>
          <exon-only e_score="0.976"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="56164" e_stop="55985" e_length="180"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.733">
            <gDNA_intron_boundary i_start="55984" i_stop="54403" i_length="1582"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="54402" e_stop="54339" e_length="64"/>
          </exon>
          <intron i_serial="2" don_prob="0.955" acc_prob="0.910">
            <gDNA_intron_boundary i_start="54338" i_stop="53906" i_length="433"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="53905" e_stop="53850" e_length="56"/>
          </exon>
          <intron i_serial="3" don_prob="0.984" acc_prob="0.999">
            <gDNA_intron_boundary i_start="53849" i_stop="53782" i_length="68"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="53781" e_stop="53706" e_length="76"/>
          </exon>
          <intron i_serial="4" don_prob="0.954" acc_prob="0.998">
            <gDNA_intron_boundary i_start="53705" i_stop="53608" i_length="98"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="53607" e_stop="53536" e_length="72"/>
          </exon>
          <intron i_serial="5" don_prob="0.950" acc_prob="0.993">
            <gDNA_intron_boundary i_start="53535" i_stop="53426" i_length="110"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="53425" e_stop="53338" e_length="88"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="53337" i_stop="53235" i_length="103"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="53234" e_stop="52976" e_length="259"/>
          </exon>
          <intron i_serial="7" don_prob="0.994" acc_prob="0.774">
            <gDNA_intron_boundary i_start="52975" i_stop="52900" i_length="76"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="52899" e_stop="52784" e_length="116"/>
          </exon>
          <intron i_serial="8" don_prob="0.802" acc_prob="0.995">
            <gDNA_intron_boundary i_start="52783" i_stop="52686" i_length="98"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="52685" e_stop="52465" e_length="221"/>
          </exon>
          <intron i_serial="9" don_prob="0.993" acc_prob="0.997">
            <gDNA_intron_boundary i_start="52464" i_stop="52251" i_length="214"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="52250" e_stop="52222" e_length="29"/>
          </exon>
          <intron i_serial="10" don_prob="0.988" acc_prob="0.984">
            <gDNA_intron_boundary i_start="52221" i_stop="52132" i_length="90"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="52131" e_stop="52038" e_length="94"/>
          </exon>
          <intron i_serial="11" don_prob="0.314" acc_prob="0.762">
            <gDNA_intron_boundary i_start="52037" i_stop="51922" i_length="116"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="51921" e_stop="51831" e_length="91"/>
          </exon>
          <intron i_serial="12" don_prob="0.997" acc_prob="0.951">
            <gDNA_intron_boundary i_start="51830" i_stop="51486" i_length="345"/>
          </intron>
          <exon e_serial="13" e_score="0.976">
            <gDNA_exon_boundary e_start="51485" e_stop="51148" e_length="338"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56164" stop="55985"/>
              <exon start="54402" stop="54339"/>
              <exon start="53905" stop="53850"/>
              <exon start="53781" stop="53706"/>
              <exon start="53607" stop="53536"/>
              <exon start="53425" stop="53338"/>
              <exon start="53234" stop="52976"/>
              <exon start="52899" stop="52784"/>
              <exon start="52685" stop="52465"/>
              <exon start="52250" stop="52222"/>
              <exon start="52131" stop="52038"/>
              <exon start="51921" stop="51831"/>
              <exon start="51485" stop="51148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U322856" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAATTACAAAAATGCCGCCGGCGAAGCAGCTCCGGGATCTGTTCACGGCGATACTGCTTGTTTTTATTATTGCGGCGGCGGCGAACTTGCCGGTTATGGTACTTTCCGGCGCCGGTGATGTCCGCAGATCGGATTTTCCTGATACTTTCGTTTTCGGTGCCGGTTCTTCTGCTTATCAA : GTTGAAGGGGCAGCATTTGAAGATGGAAGGATGCCTAGCATTTGGGACACCTTTGCTCATGCTG : GTATTTATGGAGGAGCCAACGCGGATGTATCTTGTGACGCATACCATAAATACAAG : GAAGATGTAAAACTCATGGCTGATATGGGTTTGGAAGGGTACAGATTTTCTATTTCGTGGTCGAGACTTATTCCAA : ATGGAAGAGGTTCGATTAATCCTAAAGGGTTACAGTATTACAACAATCTCATCAATGAGCTCCTCCGTCATG : GAATTCAACCACATATTACGTTATGTCACAGTGATATACCACAAACGCTTCAAGATGAATATGGTGGATGGATGAGTCGAAAGATAAT : CGATGATTTCACTGCTTATGCGGATGTGTGCTTCAAGGAATTCGGTGACAGAGTTTCATATTGGACTACATTAAATGAAGTCAATGTGTTCACTATAGGTGGTTATGATAATGGGATCACACCCCCAAATCATTGTTCCCCACCTTTCGGAGCTAAACCCTGTTCCGTAGGTAACTCTTCAACCGAGCCATACATAGTAGCTCATAATATACTACTTGCTCATTCAGCCGCGGTGAGACTATACCGGAGAAAATACAAG : TCAACTCAACATGGTTTTGTGGGATTGAATCTCTTTGCATATCGACCACTCCCTTGTACAAATGTAACAGCTGATATAAATGCAGTACAACGAGTTTATGATTTCTACGTAGGCTG : GTTTGCCAATCCCTTAATATTTGGCGATTATCCTGATGTAATGAAGAGGAATGTTGGGTCTAGATTGCCCGAATTCACACACGAAGAGTCTATGCAAGTTAAAGGCGCTATAGACTTCTTAGCACTGAATCATTATCAAACAATACATGTCAAAGATAGCTCCAGCAGCCTTGAGAGTAAAATCAGGGACTACACCATTGATGGAGCATTCGAACTAATAT : ACACCGAAGAAGATTCTCCACCAGATCAG : TTTGAGTATCCAGTGACACAACCAGGGCTAGGAGGAATATTAGAGTATCTCAAGCAAGCTTATGGCGATATTCCAATATATATTCACGAAAATG : GTCAAATGACAAGACGAAATGGTACGTTAAATGATACAAGAAGGGTGGAATATCTGCAAGCTTACATTGGGAATGTGCTTGAAGCTATGAG : GAATGGATCAAACGTGAAAGGCTATTTCGTGTGGTCATTCTTAGACTGTTTTGAGTTACTGGATGCATATGGTTCAGGATTTGGCTTATACTATGTGGATTTGGATGACAAAGAGTTAACAAGATATCCAAAGCTTTCTTCACATTGGTACACTAATTTCTTGAAGGGGAAAGACTCCAAACATAGTGAAATTCATCAGATTGAAGATAAAGTACTTCATTCTTCACAATAGGTATTTTGTGGTTTCATTTGTATCTTCACAATAATGATGTATTATTTCCTAAGTTGGGGTGGACTTTTCACTTTCAATGCTGCATTCGTGTCGAATTCTATAAAAT</gDNA_template>
            <first_frame> Q  I  T  K  M  P  P  A  K  Q  L  R  D  L  F  T  A  I  L  L  V  F  I  I  A  A  A  A  N  L  P  V  M  V  L  S  G  A  G  D  V  R  R  S  D  F  P  D  T  F  V  F  G  A  G  S  S  A  Y  Q  :  V  E  G  A  A  F  E  D  G  R  M  P  S  I  W  D  T  F  A  H  A   : G  I  Y  G  G  A  N  A  D  V  S  C  D  A  Y  H  K  Y  K  :  E  D  V  K  L  M  A  D  M  G  L  E  G  Y  R  F  S  I  S  W  S  R  L  I  P   : N  G  R  G  S  I  N  P  K  G  L  Q  Y  Y  N  N  L  I  N  E  L  L  R  H   : G  I  Q  P  H  I  T  L  C  H  S  D  I  P  Q  T  L  Q  D  E  Y  G  G  W  M  S  R  K  I  I :   D  D  F  T  A  Y  A  D  V  C  F  K  E  F  G  D  R  V  S  Y  W  T  T  L  N  E  V  N  V  F  T  I  G  G  Y  D  N  G  I  T  P  P  N  H  C  S  P  P  F  G  A  K  P  C  S  V  G  N  S  S  T  E  P  Y  I  V  A  H  N  I  L  L  A  H  S  A  A  V  R  L  Y  R  R  K  Y  K  :  S  T  Q  H  G  F  V  G  L  N  L  F  A  Y  R  P  L  P  C  T  N  V  T  A  D  I  N  A  V  Q  R  V  Y  D  F  Y  V  G  W :   F  A  N  P  L  I  F  G  D  Y  P  D  V  M  K  R  N  V  G  S  R  L  P  E  F  T  H  E  E  S  M  Q  V  K  G  A  I  D  F  L  A  L  N  H  Y  Q  T  I  H  V  K  D  S  S  S  S  L  E  S  K  I  R  D  Y  T  I  D  G  A  F  E  L  I   : Y  T  E  E  D  S  P  P  D  Q  :  F  E  Y  P  V  T  Q  P  G  L  G  G  I  L  E  Y  L  K  Q  A  Y  G  D  I  P  I  Y  I  H  E  N   : G  Q  M  T  R  R  N  G  T  L  N  D  T  R  R  V  E  Y  L  Q  A  Y  I  G  N  V  L  E  A  M  R :   N  G  S  N  V  K  G  Y  F  V  W  S  F  L  D  C  F  E  L  L  D  A  Y  G  S  G  F  G  L  Y  Y  V  D  L  D  D  K  E  L  T  R  Y  P  K  L  S  S  H  W  Y  T  N  F  L  K  G  K  D  S  K  H  S  E  I  H  Q  I  E  D  K  V  L  H  S  S  Q  *  V  F  C  G  F  I  C  I  F  T  I  M  M  Y  Y  F  L  S  W  G  G  L  F  T  F  N  A  A  F  V  S  N  S  I  K  </first_frame>
            <second_frame>  K  L  Q  K  C  R  R  R  S  S  S  G  I  C  S  R  R  Y  C  L  F  L  L  L  R  R  R  R  T  C  R  L  W  Y  F  P  A  P  V  M  S  A  D  R  I  F  L  I  L  S  F  S  V  P  V  L  L  L  I  K :   L  K  G  Q  H  L  K  M  E  G  C  L  A  F  G  T  P  L  L  M  L  :  V  F  M  E  E  P  T  R  M  Y  L  V  T  H  T  I  N  T  R :   K  M  *  N  S  W  L  I  W  V  W  K  G  T  D  F  L  F  R  G  R  D  L  F  Q  :  M  E  E  V  R  L  I  L  K  G  Y  S  I  T  T  I  S  S  M  S  S  S  V  M  :  E  F  N  H  I  L  R  Y  V  T  V  I  Y  H  K  R  F  K  M  N  M  V  D  G  *  V  E  R  *   : S  M  I  S  L  L  M  R  M  C  A  S  R  N  S  V  T  E  F  H  I  G  L  H  *  M  K  S  M  C  S  L  *  V  V  M  I  M  G  S  H  P  Q  I  I  V  P  H  L  S  E  L  N  P  V  P  *  V  T  L  Q  P  S  H  T  *  *  L  I  I  Y  Y  L  L  I  Q  P  R  *  D  Y  T  G  E  N  T  S :   Q  L  N  M  V  L  W  D  *  I  S  L  H  I  D  H  S  L  V  Q  M  *  Q  L  I  *  M  Q  Y  N  E  F  M  I  S  T  *  A   : G  L  P  I  P  *  Y  L  A  I  I  L  M  *  *  R  G  M  L  G  L  D  C  P  N  S  H  T  K  S  L  C  K  L  K  A  L  *  T  S  *  H  *  I  I  I  K  Q  Y  M  S  K  I  A  P  A  A  L  R  V  K  S  G  T  T  P  L  M  E  H  S  N  *  Y  :  T  P  K  K  I  L  H  Q  I  S :   L  S  I  Q  *  H  N  Q  G  *  E  E  Y  *  S  I  S  S  K  L  M  A  I  F  Q  Y  I  F  T  K  M  :  V  K  *  Q  D  E  M  V  R  *  M  I  Q  E  G  W  N  I  C  K  L  T  L  G  M  C  L  K  L  *   : G  M  D  Q  T  *  K  A  I  S  C  G  H  S  *  T  V  L  S  Y  W  M  H  M  V  Q  D  L  A  Y  T  M  W  I  W  M  T  K  S  *  Q  D  I  Q  S  F  L  H  I  G  T  L  I  S  *  R  G  K  T  P  N  I  V  K  F  I  R  L  K  I  K  Y  F  I  L  H  N  R  Y  F  V  V  S  F  V  S  S  Q  *  *  C  I  I  S  *  V  G  V  D  F  S  L  S  M  L  H  S  C  R  I  L  *  N </second_frame>
            <third_frame>   N  Y  K  N  A  A  G  E  A  A  P  G  S  V  H  G  D  T  A  C  F  Y  Y  C  G  G  G  E  L  A  G  Y  G  T  F  R  R  R  *  C  P  Q  I  G  F  S  *  Y  F  R  F  R  C  R  F  F  C  L  S   : S  *  R  G  S  I  *  R  W  K  D  A  *  H  L  G  H  L  C  S  C  W :   Y  L  W  R  S  Q  R  G  C  I  L  *  R  I  P  *  I  Q   : G  R  C  K  T  H  G  *  Y  G  F  G  R  V  Q  I  F  Y  F  V  V  E  T  Y  S  K :   W  K  R  F  D  *  S  *  R  V  T  V  L  Q  Q  S  H  Q  *  A  P  P  S  W :   N  S  T  T  Y  Y  V  M  S  Q  *  Y  T  T  N  A  S  R  *  I  W  W  M  D  E  S  K  D  N  :  R  *  F  H  C  L  C  G  C  V  L  Q  G  I  R  *  Q  S  F  I  L  D  Y  I  K  *  S  Q  C  V  H  Y  R  W  L  *  *  W  D  H  T  P  K  S  L  F  P  T  F  R  S  *  T  L  F  R  R  *  L  F  N  R  A  I  H  S  S  S  *  Y  T  T  C  S  F  S  R  G  E  T  I  P  E  K  I  Q   : V  N  S  T  W  F  C  G  I  E  S  L  C  I  S  T  T  P  L  Y  K  C  N  S  *  Y  K  C  S  T  T  S  L  *  F  L  R  R  L  :  V  C  Q  S  L  N  I  W  R  L  S  *  C  N  E  E  E  C  W  V  *  I  A  R  I  H  T  R  R  V  Y  A  S  *  R  R  Y  R  L  L  S  T  E  S  L  S  N  N  T  C  Q  R  *  L  Q  Q  P  *  E  *  N  Q  G  L  H  H  *  W  S  I  R  T  N  I :   H  R  R  R  F  S  T  R  S   : V  *  V  S  S  D  T  T  R  A  R  R  N  I  R  V  S  Q  A  S  L  W  R  Y  S  N  I  Y  S  R  K  W :   S  N  D  K  T  K  W  Y  V  K  *  Y  K  K  G  G  I  S  A  S  L  H  W  E  C  A  *  S  Y  E  :  E  W  I  K  R  E  R  L  F  R  V  V  I  L  R  L  F  *  V  T  G  C  I  W  F  R  I  W  L  I  L  C  G  F  G  *  Q  R  V  N  K  I  S  K  A  F  F  T  L  V  H  *  F  L  E  G  E  R  L  Q  T  *  *  N  S  S  D  *  R  *  S  T  S  F  F  T  I  G  I  L  W  F  H  L  Y  L  H  N  N  D  V  L  F  P  K  L  G  W  T  F  H  F  Q  C  C  I  R  V  E  F  Y  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0038L16.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56164" stop="55985"/>
                    <exon start="54402" stop="54339"/>
                    <exon start="53905" stop="53850"/>
                    <exon start="53781" stop="53706"/>
                    <exon start="53607" stop="53536"/>
                    <exon start="53425" stop="53338"/>
                    <exon start="53234" stop="52976"/>
                    <exon start="52899" stop="52784"/>
                    <exon start="52685" stop="52465"/>
                    <exon start="52250" stop="52222"/>
                    <exon start="52131" stop="52038"/>
                    <exon start="51921" stop="51831"/>
                    <exon start="51485" stop="51254"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1575</number_coding_nucleotides>
                  <number_encoded_amino_acids>525</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QITKMPPAKQLRDLFTAILLVFIIAAAANLPVMVLSGAGDVRRSDFPDTFVFGAGSSAYQVEGAAFEDGRMPSIWDTFAHAGIYGGANADVSCDAYHKYKEDVKLMADMGLEGYRFSISWSRLIPNGRGSINPKGLQYYNNLINELLRHGIQPHITLCHSDIPQTLQDEYGGWMSRKIIDDFTAYADVCFKEFGDRVSYWTTLNEVNVFTIGGYDNGITPPNHCSPPFGAKPCSVGNSSTEPYIVAHNILLAHSAAVRLYRRKYKSTQHGFVGLNLFAYRPLPCTNVTADINAVQRVYDFYVGWFANPLIFGDYPDVMKRNVGSRLPEFTHEESMQVKGAIDFLALNHYQTIHVKDSSSSLESKIRDYTIDGAFELIYTEEDSPPDQFEYPVTQPGLGGILEYLKQAYGDIPIYIHENGQMTRRNGTLNDTRRVEYLQAYIGNVLEAMRNGSNVKGYFVWSFLDCFELLDAYGSGFGLYYVDLDDKELTRYPKLSSHWYTNFLKGKDSKHSEIHQIEDKVLHSSQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="61246" PGL_stop="60494"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="61246" e_stop="60494"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="61246" e_stop="60494" e_length="753"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61246" stop="60494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U325446" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACCAGGCACTGAAAATCATCTTCACACATTCCACAAACCTACAAAAAGGCTTTTCTACCTCTTTTGCCCACAAAAATCACTAACCAAATTCTCATTCTTGAATTTGTTACAACTTACAAGTGTTTTTGCTGATAAATTTGGTGTTTAATTCCATTGGATTGAGCAAGGGGTTTGATTCTATTCATCTTTTTTTAGATGTCGAATTCATGTATGGTTGATGGATTTTTCTCAAAACTATCAGAGGATTTGATTCTCAATATATTTTTCAAGCTAGAAGATGATCCAAGGAACTGGGCTCGTTTATCTTGTGTTTCAACGAAATTTGCATTTCTGATTCATACTATTTGTTACAAATCGAAATGCTCTGCAACTATTCCTTCGGTTGTTTCCGATCTAGTAAGTTCGACGTCTTCGTGTCCTCCAGGTGGGTGGTCTTCACTTTACAAGCTAGCTGTATGCTGTCCGGGTCTTCATCAAGCTGGTGTTCTTCTGGAGAATTCTGATTTTGGGCTTGAACGTGAAATTGGTCCGGATGAGAGTTATTCGGGTCGGGTTTTCCCTAAAGCTGAGCTGATTCCTTCTTCATCGAGTAATAATAATAATCGGTGTGATTCTGGTGAAGTTGTTGATTGTGGTTGGTCTTTGTTTGATGATCTTATGTTTGATACTGTTTATGATGCTTCTGAATCGAGTTCAAATCAGATTGAGGTCGTCGAGGAGGAACCCACAAGCTTTGTGGTGAATCCCACAAG</gDNA_template>
            <first_frame> N  Q  A  L  K  I  I  F  T  H  S  T  N  L  Q  K  G  F  S  T  S  F  A  H  K  N  H  *  P  N  S  H  S  *  I  C  Y  N  L  Q  V  F  L  L  I  N  L  V  F  N  S  I  G  L  S  K  G  F  D  S  I  H  L  F  L  D  V  E  F  M  Y  G  *  W  I  F  L  K  T  I  R  G  F  D  S  Q  Y  I  F  Q  A  R  R  *  S  K  E  L  G  S  F  I  L  C  F  N  E  I  C  I  S  D  S  Y  Y  L  L  Q  I  E  M  L  C  N  Y  S  F  G  C  F  R  S  S  K  F  D  V  F  V  S  S  R  W  V  V  F  T  L  Q  A  S  C  M  L  S  G  S  S  S  S  W  C  S  S  G  E  F  *  F  W  A  *  T  *  N  W  S  G  *  E  L  F  G  S  G  F  P  *  S  *  A  D  S  F  F  I  E  *  *  *  *  S  V  *  F  W  *  S  C  *  L  W  L  V  F  V  *  *  S  Y  V  *  Y  C  L  *  C  F  *  I  E  F  K  S  D  *  G  R  R  G  G  T  H  K  L  C  G  E  S  H  K </first_frame>
            <second_frame>  T  R  H  *  K  S  S  S  H  I  P  Q  T  Y  K  K  A  F  L  P  L  L  P  T  K  I  T  N  Q  I  L  I  L  E  F  V  T  T  Y  K  C  F  C  *  *  I  W  C  L  I  P  L  D  *  A  R  G  L  I  L  F  I  F  F  *  M  S  N  S  C  M  V  D  G  F  F  S  K  L  S  E  D  L  I  L  N  I  F  F  K  L  E  D  D  P  R  N  W  A  R  L  S  C  V  S  T  K  F  A  F  L  I  H  T  I  C  Y  K  S  K  C  S  A  T  I  P  S  V  V  S  D  L  V  S  S  T  S  S  C  P  P  G  G  W  S  S  L  Y  K  L  A  V  C  C  P  G  L  H  Q  A  G  V  L  L  E  N  S  D  F  G  L  E  R  E  I  G  P  D  E  S  Y  S  G  R  V  F  P  K  A  E  L  I  P  S  S  S  S  N  N  N  N  R  C  D  S  G  E  V  V  D  C  G  W  S  L  F  D  D  L  M  F  D  T  V  Y  D  A  S  E  S  S  S  N  Q  I  E  V  V  E  E  E  P  T  S  F  V  V  N  P  T   </second_frame>
            <third_frame>   P  G  T  E  N  H  L  H  T  F  H  K  P  T  K  R  L  F  Y  L  F  C  P  Q  K  S  L  T  K  F  S  F  L  N  L  L  Q  L  T  S  V  F  A  D  K  F  G  V  *  F  H  W  I  E  Q  G  V  *  F  Y  S  S  F  F  R  C  R  I  H  V  W  L  M  D  F  S  Q  N  Y  Q  R  I  *  F  S  I  Y  F  S  S  *  K  M  I  Q  G  T  G  L  V  Y  L  V  F  Q  R  N  L  H  F  *  F  I  L  F  V  T  N  R  N  A  L  Q  L  F  L  R  L  F  P  I  *  *  V  R  R  L  R  V  L  Q  V  G  G  L  H  F  T  S  *  L  Y  A  V  R  V  F  I  K  L  V  F  F  W  R  I  L  I  L  G  L  N  V  K  L  V  R  M  R  V  I  R  V  G  F  S  L  K  L  S  *  F  L  L  H  R  V  I  I  I  I  G  V  I  L  V  K  L  L  I  V  V  G  L  C  L  M  I  L  C  L  I  L  F  M  M  L  L  N  R  V  Q  I  R  L  R  S  S  R  R  N  P  Q  A  L  W  *  I  P  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0038L16.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61050" stop="60496"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>555</number_coding_nucleotides>
                  <number_encoded_amino_acids>185</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MSNSCMVDGFFSKLSEDLILNIFFKLEDDPRNWARLSCVSTKFAFLIHTICYKSKCSATIPSVVSDLVSSTSSCPPGGWSSLYKLAVCCPGLHQAGVLLENSDFGLEREIGPDESYSGRVFPKAELIPSSSSNNNNRCDSGEVVDCGWSLFDDLMFDTVYDASESSSNQIEVVEEEPTSFVVNPT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="68608" PGL_stop="62401"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68608" e_stop="68063"/>
            <exon e_start="67795" e_stop="67730"/>
            <exon e_start="67627" e_stop="67553"/>
            <exon e_start="67457" e_stop="67343"/>
            <exon e_start="67257" e_stop="67211"/>
            <exon e_start="67095" e_stop="67038"/>
            <exon e_start="65268" e_stop="65219"/>
            <exon e_start="65091" e_stop="65035"/>
            <exon e_start="64951" e_stop="64830"/>
            <exon e_start="64747" e_stop="64649"/>
            <exon e_start="63075" e_stop="63042"/>
            <exon e_start="62868" e_stop="62753"/>
            <exon e_start="62673" e_stop="62401"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.987"/>
          <exon-intron don_prob="0.994" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.611" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.732" acc_prob="0.949" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.791" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.433" e_score="0.902"/>
          <exon-intron don_prob="0.999" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.906" acc_prob="0.964" e_score="1.000"/>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="68608" e_stop="68063" e_length="546"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="68062" i_stop="67796" i_length="267"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="67795" e_stop="67730" e_length="66"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.979">
            <gDNA_intron_boundary i_start="67729" i_stop="67628" i_length="102"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="67627" e_stop="67553" e_length="75"/>
          </exon>
          <intron i_serial="3" don_prob="0.964" acc_prob="0.990">
            <gDNA_intron_boundary i_start="67552" i_stop="67458" i_length="95"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="67457" e_stop="67343" e_length="115"/>
          </exon>
          <intron i_serial="4" don_prob="0.982" acc_prob="0.999">
            <gDNA_intron_boundary i_start="67342" i_stop="67258" i_length="85"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="67257" e_stop="67211" e_length="47"/>
          </exon>
          <intron i_serial="5" don_prob="0.611" acc_prob="0.999">
            <gDNA_intron_boundary i_start="67210" i_stop="67096" i_length="115"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="67095" e_stop="67038" e_length="58"/>
          </exon>
          <intron i_serial="6" don_prob="0.732" acc_prob="0.949">
            <gDNA_intron_boundary i_start="67037" i_stop="65269" i_length="1769"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="65268" e_stop="65219" e_length="50"/>
          </exon>
          <intron i_serial="7" don_prob="0.995" acc_prob="0.963">
            <gDNA_intron_boundary i_start="65218" i_stop="65092" i_length="127"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="65091" e_stop="65035" e_length="57"/>
          </exon>
          <intron i_serial="8" don_prob="0.978" acc_prob="0.791">
            <gDNA_intron_boundary i_start="65034" i_stop="64952" i_length="83"/>
          </intron>
          <exon e_serial="9" e_score="0.902">
            <gDNA_exon_boundary e_start="64951" e_stop="64830" e_length="122"/>
          </exon>
          <intron i_serial="9" don_prob="0.982" acc_prob="0.433">
            <gDNA_intron_boundary i_start="64829" i_stop="64748" i_length="82"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="64747" e_stop="64649" e_length="99"/>
          </exon>
          <intron i_serial="10" don_prob="0.999" acc_prob="0.961">
            <gDNA_intron_boundary i_start="64648" i_stop="63076" i_length="1573"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="63075" e_stop="63042" e_length="34"/>
          </exon>
          <intron i_serial="11" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="63041" i_stop="62869" i_length="173"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="62868" e_stop="62753" e_length="116"/>
          </exon>
          <intron i_serial="12" don_prob="0.906" acc_prob="0.964">
            <gDNA_intron_boundary i_start="62752" i_stop="62674" i_length="79"/>
          </intron>
          <exon e_serial="13" e_score="0.982">
            <gDNA_exon_boundary e_start="62673" e_stop="62401" e_length="273"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68608" stop="68063"/>
              <exon start="67795" stop="67730"/>
              <exon start="67627" stop="67553"/>
              <exon start="67457" stop="67343"/>
              <exon start="67257" stop="67211"/>
              <exon start="67095" stop="67038"/>
              <exon start="65268" stop="65219"/>
              <exon start="65091" stop="65035"/>
              <exon start="64951" stop="64830"/>
              <exon start="64747" stop="64649"/>
              <exon start="63075" stop="63042"/>
              <exon start="62868" stop="62753"/>
              <exon start="62673" stop="62401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U313754" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCGATCTTCCCAGGTATGTTCTCTAATGGAGGTTACGTAAATCGTTTTTTTTAGCTTTAATTGATATAATCATCAATATATCGTCAAAATATAGTTCAATTTTTTCCTTCTTTCCCATTTACCTTGCTTGTCAATGCAAAAATGTCCGGGTTGTATAAATTAATGTCAGTAAAATTGTGGAAAGTTGCTTTGTTTATTCTTTAGATGATCAAGATACGTTTCTGCGACTGAAATTGGTTTTGCAACTGAATAATTACTAGAGTTGAAGCTTTTATCCTTTTTCTTTTCCCGTTTTGTCCTTAGAGAGAATGTATGAACTGTTTTAAGTCGTTGTTGTTTTTTGCTTAACTGCAAGAGGTGCTTTTTTCTTGTCCTTGTGGTCAATTAACTGCAAGAGGTGCTTGTTTCTTGTTTTTGTGGACAATTGACTGCAAGTGAATGTGGTTTTGCCTTTCAGGAACAATGAGTCGGTCGAGTAGGACACTTTATGTTGGCAATCTTCCTGGTGATGTTCGTGAGCGTGAAGTGGAAGATCTCTTTTACAAG : TATGGACCGATTGCACATATTGAGCTGAAAATTCCACCAAGACCCCCTGGTTATGCTTTTGTTGAG : TTTGAAGAGGCTCGTGATGCTGAAGATGCTATTCGTGGTCGTGATGGCTATGATTTTGATGGGCACCGTCTGCGG : GTTGAGCTTGCACATGGCGGGCGTGGTAACTCATCATCAAATGATCGTTATGGTGGTGGCGGTGGCGGCCGTGGTCAGCGTGGTGGAGGAGTGTCAAGACGTTCAGATTATCGAG : TGTTAGTTACAGGATTACCCCATTCAGCATCGTGGCAGGATCTCAAG : GATCACATGCGCCGTGCTGGGGATGTTTGTTTCTCCCAAGTTTTCCGTGACGGGAGTG : GAACCACTGGTATAATTGATTATACAAACTATGATGACATGAAATATGCT : ATCAAAAAGCTTGATGACTCTGAGTTTCGAAATGCCTTTTCTCGTGCGACAATTCGA : GTTAAAGAATATGACCGCAGTCGAAGTCGCAGCCGCAGTCGCAGTCGCTCTTACTCCAGAGGGAAGAGTGTTAGTCGAAGCCGAAGCCGTAGCCGAAGTAGAAGCCGAAGCAAGAGCAAAAG : CAAATCTCCTAAAGTTAAGTCTTCAAAGCGCTCAAGATCTCGTTCAAGGTCTGTGTCTTCTCAGTCTCGTTCTGGGTCAAAAGGACGTCCTGTCTCAAG : ATCTCCATCAAGGTCCAGATCACCAGCACCAGCT : CGTTCAAAACAATTAAGTGAAAGTCCCAAAAGACGCACTCCCAGCAGTAGCCCCAAAAGACGCACTCCAAGCAGAAGCCCAAGCCGGAGTAGGAGCCGTAGCCAAAGTTTGTCCAG : GTAAGATTGCTGGAATCATCAGTGATTGAGGGTGCCATCATGCTGTGTTTGAGCAGCCTGGTCCACAGTTGGGAGCCCAAGTGACCGGAAGAGTCTGTTGCTCTGCTTACATCAAAATATTTCTGTGTCATTGAACCATGTCAAGACTGTAATAATTATTATACTTGTTTTTGTAGCTCTTAATCTTGGTAAAAGACTGCAATATAGTAGATGATATTGTGAAAAACGGAATTTAATTTCCTTGAATTGCAGATTATTGTTGGTCGACTGATG</gDNA_template>
            <first_frame> S  I  F  P  G  M  F  S  N  G  G  Y  V  N  R  F  F  *  L  *  L  I  *  S  S  I  Y  R  Q  N  I  V  Q  F  F  P  S  F  P  F  T  L  L  V  N  A  K  M  S  G  L  Y  K  L  M  S  V  K  L  W  K  V  A  L  F  I  L  *  M  I  K  I  R  F  C  D  *  N  W  F  C  N  *  I  I  T  R  V  E  A  F  I  L  F  L  F  P  F  C  P  *  R  E  C  M  N  C  F  K  S  L  L  F  F  A  *  L  Q  E  V  L  F  S  C  P  C  G  Q  L  T  A  R  G  A  C  F  L  F  L  W  T  I  D  C  K  *  M  W  F  C  L  S  G  T  M  S  R  S  S  R  T  L  Y  V  G  N  L  P  G  D  V  R  E  R  E  V  E  D  L  F  Y  K  :  Y  G  P  I  A  H  I  E  L  K  I  P  P  R  P  P  G  Y  A  F  V  E  :  F  E  E  A  R  D  A  E  D  A  I  R  G  R  D  G  Y  D  F  D  G  H  R  L  R  :  V  E  L  A  H  G  G  R  G  N  S  S  S  N  D  R  Y  G  G  G  G  G  G  R  G  Q  R  G  G  G  V  S  R  R  S  D  Y  R   : V  L  V  T  G  L  P  H  S  A  S  W  Q  D  L  K  :  D  H  M  R  R  A  G  D  V  C  F  S  Q  V  F  R  D  G  S   : G  T  T  G  I  I  D  Y  T  N  Y  D  D  M  K  Y  A  :  I  K  K  L  D  D  S  E  F  R  N  A  F  S  R  A  T  I  R  :  V  K  E  Y  D  R  S  R  S  R  S  R  S  R  S  R  S  Y  S  R  G  K  S  V  S  R  S  R  S  R  S  R  S  R  S  R  S  K  S  K  S :   K  S  P  K  V  K  S  S  K  R  S  R  S  R  S  R  S  V  S  S  Q  S  R  S  G  S  K  G  R  P  V  S  R :   S  P  S  R  S  R  S  P  A  P  A  :  R  S  K  Q  L  S  E  S  P  K  R  R  T  P  S  S  S  P  K  R  R  T  P  S  R  S  P  S  R  S  R  S  R  S  Q  S  L  S  R :   *  D  C  W  N  H  Q  *  L  R  V  P  S  C  C  V  *  A  A  W  S  T  V  G  S  P  S  D  R  K  S  L  L  L  C  L  H  Q  N  I  S  V  S  L  N  H  V  K  T  V  I  I  I  I  L  V  F  V  A  L  N  L  G  K  R  L  Q  Y  S  R  *  Y  C  E  K  R  N  L  I  S  L  N  C  R  L  L  L  V  D  *   </first_frame>
            <second_frame>  R  S  S  Q  V  C  S  L  M  E  V  T  *  I  V  F  F  S  F  N  *  Y  N  H  Q  Y  I  V  K  I  *  F  N  F  F  L  L  S  H  L  P  C  L  S  M  Q  K  C  P  G  C  I  N  *  C  Q  *  N  C  G  K  L  L  C  L  F  F  R  *  S  R  Y  V  S  A  T  E  I  G  F  A  T  E  *  L  L  E  L  K  L  L  S  F  F  F  S  R  F  V  L  R  E  N  V  *  T  V  L  S  R  C  C  F  L  L  N  C  K  R  C  F  F  L  V  L  V  V  N  *  L  Q  E  V  L  V  S  C  F  C  G  Q  L  T  A  S  E  C  G  F  A  F  Q  E  Q  *  V  G  R  V  G  H  F  M  L  A  I  F  L  V  M  F  V  S  V  K  W  K  I  S  F  T  S :   M  D  R  L  H  I  L  S  *  K  F  H  Q  D  P  L  V  M  L  L  L  S :   L  K  R  L  V  M  L  K  M  L  F  V  V  V  M  A  M  I  L  M  G  T  V  C  G :   L  S  L  H  M  A  G  V  V  T  H  H  Q  M  I  V  M  V  V  A  V  A  A  V  V  S  V  V  E  E  C  Q  D  V  Q  I  I  E  :  C  *  L  Q  D  Y  P  I  Q  H  R  G  R  I  S  R :   I  T  C  A  V  L  G  M  F  V  S  P  K  F  S  V  T  G  V  :  E  P  L  V  *  L  I  I  Q  T  M  M  T  *  N  M  L :   S  K  S  L  M  T  L  S  F  E  M  P  F  L  V  R  Q  F  E :   L  K  N  M  T  A  V  E  V  A  A  A  V  A  V  A  L  T  P  E  G  R  V  L  V  E  A  E  A  V  A  E  V  E  A  E  A  R  A  K   : A  N  L  L  K  L  S  L  Q  S  A  Q  D  L  V  Q  G  L  C  L  L  S  L  V  L  G  Q  K  D  V  L  S  Q   : D  L  H  Q  G  P  D  H  Q  H  Q  L :   V  Q  N  N  *  V  K  V  P  K  D  A  L  P  A  V  A  P  K  D  A  L  Q  A  E  A  Q  A  G  V  G  A  V  A  K  V  C  P   : G  K  I  A  G  I  I  S  D  *  G  C  H  H  A  V  F  E  Q  P  G  P  Q  L  G  A  Q  V  T  G  R  V  C  C  S  A  Y  I  K  I  F  L  C  H  *  T  M  S  R  L  *  *  L  L  Y  L  F  L  *  L  L  I  L  V  K  D  C  N  I  V  D  D  I  V  K  N  G  I  *  F  P  *  I  A  D  Y  C  W  S  T  D  </second_frame>
            <third_frame>   D  L  P  R  Y  V  L  *  W  R  L  R  K  S  F  F  L  A  L  I  D  I  I  I  N  I  S  S  K  Y  S  S  I  F  S  F  F  P  I  Y  L  A  C  Q  C  K  N  V  R  V  V  *  I  N  V  S  K  I  V  E  S  C  F  V  Y  S  L  D  D  Q  D  T  F  L  R  L  K  L  V  L  Q  L  N  N  Y  *  S  *  S  F  Y  P  F  S  F  P  V  L  S  L  E  R  M  Y  E  L  F  *  V  V  V  V  F  C  L  T  A  R  G  A  F  F  L  S  L  W  S  I  N  C  K  R  C  L  F  L  V  F  V  D  N  *  L  Q  V  N  V  V  L  P  F  R  N  N  E  S  V  E  *  D  T  L  C  W  Q  S  S  W  *  C  S  *  A  *  S  G  R  S  L  L  Q   : V  W  T  D  C  T  Y  *  A  E  N  S  T  K  T  P  W  L  C  F  C  *   : V  *  R  G  S  *  C  *  R  C  Y  S  W  S  *  W  L  *  F  *  W  A  P  S  A   : G  *  A  C  T  W  R  A  W  *  L  I  I  K  *  S  L  W  W  W  R  W  R  P  W  S  A  W  W  R  S  V  K  T  F  R  L  S  S :   V  S  Y  R  I  T  P  F  S  I  V  A  G  S  Q   : G  S  H  A  P  C  W  G  C  L  F  L  P  S  F  P  *  R  E  W :   N  H  W  Y  N  *  L  Y  K  L  *  *  H  E  I  C   : Y  Q  K  A  *  *  L  *  V  S  K  C  L  F  S  C  D  N  S   : S  *  R  I  *  P  Q  S  K  S  Q  P  Q  S  Q  S  L  L  L  Q  R  E  E  C  *  S  K  P  K  P  *  P  K  *  K  P  K  Q  E  Q  K  :  Q  I  S  *  S  *  V  F  K  A  L  K  I  S  F  K  V  C  V  F  S  V  S  F  W  V  K  R  T  S  C  L  K  :  I  S  I  K  V  Q  I  T  S  T  S   : S  F  K  T  I  K  *  K  S  Q  K  T  H  S  Q  Q  *  P  Q  K  T  H  S  K  Q  K  P  K  P  E  *  E  P  *  P  K  F  V  Q  :  V  R  L  L  E  S  S  V  I  E  G  A  I  M  L  C  L  S  S  L  V  H  S  W  E  P  K  *  P  E  E  S  V  A  L  L  T  S  K  Y  F  C  V  I  E  P  C  Q  D  C  N  N  Y  Y  T  C  F  C  S  S  *  S  W  *  K  T  A  I  *  *  M  I  L  *  K  T  E  F  N  F  L  E  L  Q  I  I  V  G  R  L  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0038L16.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68170" stop="68063"/>
                    <exon start="67795" stop="67730"/>
                    <exon start="67627" stop="67553"/>
                    <exon start="67457" stop="67343"/>
                    <exon start="67257" stop="67211"/>
                    <exon start="67095" stop="67038"/>
                    <exon start="65268" stop="65219"/>
                    <exon start="65091" stop="65035"/>
                    <exon start="64951" stop="64830"/>
                    <exon start="64747" stop="64649"/>
                    <exon start="63075" stop="63042"/>
                    <exon start="62868" stop="62753"/>
                    <exon start="62673" stop="62670"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>948</number_coding_nucleotides>
                  <number_encoded_amino_acids>316</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MWFCLSGTMSRSSRTLYVGNLPGDVREREVEDLFYKYGPIAHIELKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGRGNSSSNDRYGGGGGGRGQRGGGVSRRSDYRVLVTGLPHSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIIDYTNYDDMKYAIKKLDDSEFRNAFSRATIRVKEYDRSRSRSRSRSRSYSRGKSVSRSRSRSRSRSRSKSKSKSPKVKSSKRSRSRSRSVSSQSRSGSKGRPVSRSPSRSRSPAPARSKQLSESPKRRTPSSSPKRRTPSRSPSRSRSRSQSLSR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="63424" e_stop="62623"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="63424" e_stop="62623" e_length="802"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63424" stop="62623"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U334578" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGGATTCTATGGTGGAGCTGGACTGGGGAACCAACTGCCACCTGAATTTGGATCACCACCTATTTTTTGGTAGAAGCATGTTCTAACAAAGCGAAATAAAGACTAGTTCATTCTTTTGGTATCCTGCTAATTGGTCTCTTTGACTGCTCGAATTTAAAATATTACATAGTCTCAATGGTGTAACTTGCATTGTTTTATACTTGCCATATTTTCCACTCTGGATTCTGCCAAATTGCTACTTTCATTATGGTCATGCTGAGGTGGAAGTGAAATCAAAGCAGTTGTGGAGGAAACTTGTTAAGTGGCGGGACTGGGATATTAAATTAAGTTCTTTCTGGAAATTTTGCAGATCTCCATCAAGGTCCAGATCACCAGCACCAGCTGTAAGTCAAATCTACATGTTTTAAAGTGAACGGAATAACCCAAAATTCAAATATATTGGGATCATCCGTCTTGTCTGTCTTTTTTTTGTGCTTACCTGGCCTTTTCAAAGTACATTCTCTCTTTTCTCTGTCTACATAATTATTGCTTTGTATTATGACTGGGTTAATTACAGCGTTCAAAACAATTAAGTGAAAGTCCCAAAAGACGCACTCCCAGCAGTAGCCCCAAAAGACGCACTCCAAGCAGAAGCCCAAGCCGGAGTAGGAGCCGTAGCCAAAGTTTGTCCAGGTCTTACTTCTGTGGCTTGTCGTATATCTTTCAATGTTTGACCGTTTCGTTAATTTTTTCTCCTCGCCTCTTTTTATAGGTAAGATTGCTGGAATCATCAGTGATTGAGGGTGCCATCATGCTGTGTTTG</gDNA_template>
            <first_frame> R  I  L  W  W  S  W  T  G  E  P  T  A  T  *  I  W  I  T  T  Y  F  L  V  E  A  C  S  N  K  A  K  *  R  L  V  H  S  F  G  I  L  L  I  G  L  F  D  C  S  N  L  K  Y  Y  I  V  S  M  V  *  L  A  L  F  Y  T  C  H  I  F  H  S  G  F  C  Q  I  A  T  F  I  M  V  M  L  R  W  K  *  N  Q  S  S  C  G  G  N  L  L  S  G  G  T  G  I  L  N  *  V  L  S  G  N  F  A  D  L  H  Q  G  P  D  H  Q  H  Q  L  *  V  K  S  T  C  F  K  V  N  G  I  T  Q  N  S  N  I  L  G  S  S  V  L  S  V  F  F  L  C  L  P  G  L  F  K  V  H  S  L  F  S  L  S  T  *  L  L  L  C  I  M  T  G  L  I  T  A  F  K  T  I  K  *  K  S  Q  K  T  H  S  Q  Q  *  P  Q  K  T  H  S  K  Q  K  P  K  P  E  *  E  P  *  P  K  F  V  Q  V  L  L  L  W  L  V  V  Y  L  S  M  F  D  R  F  V  N  F  F  S  S  P  L  F  I  G  K  I  A  G  I  I  S  D  *  G  C  H  H  A  V  F  </first_frame>
            <second_frame>  G  F  Y  G  G  A  G  L  G  N  Q  L  P  P  E  F  G  S  P  P  I  F  W  *  K  H  V  L  T  K  R  N  K  D  *  F  I  L  L  V  S  C  *  L  V  S  L  T  A  R  I  *  N  I  T  *  S  Q  W  C  N  L  H  C  F  I  L  A  I  F  S  T  L  D  S  A  K  L  L  L  S  L  W  S  C  *  G  G  S  E  I  K  A  V  V  E  E  T  C  *  V  A  G  L  G  Y  *  I  K  F  F  L  E  I  L  Q  I  S  I  K  V  Q  I  T  S  T  S  C  K  S  N  L  H  V  L  K  *  T  E  *  P  K  I  Q  I  Y  W  D  H  P  S  C  L  S  F  F  C  A  Y  L  A  F  S  K  Y  I  L  S  F  L  C  L  H  N  Y  C  F  V  L  *  L  G  *  L  Q  R  S  K  Q  L  S  E  S  P  K  R  R  T  P  S  S  S  P  K  R  R  T  P  S  R  S  P  S  R  S  R  S  R  S  Q  S  L  S  R  S  Y  F  C  G  L  S  Y  I  F  Q  C  L  T  V  S  L  I  F  S  P  R  L  F  L  *  V  R  L  L  E  S  S  V  I  E  G  A  I  M  L  C  L </second_frame>
            <third_frame>   D  S  M  V  E  L  D  W  G  T  N  C  H  L  N  L  D  H  H  L  F  F  G  R  S  M  F  *  Q  S  E  I  K  T  S  S  F  F  W  Y  P  A  N  W  S  L  *  L  L  E  F  K  I  L  H  S  L  N  G  V  T  C  I  V  L  Y  L  P  Y  F  P  L  W  I  L  P  N  C  Y  F  H  Y  G  H  A  E  V  E  V  K  S  K  Q  L  W  R  K  L  V  K  W  R  D  W  D  I  K  L  S  S  F  W  K  F  C  R  S  P  S  R  S  R  S  P  A  P  A  V  S  Q  I  Y  M  F  *  S  E  R  N  N  P  K  F  K  Y  I  G  I  I  R  L  V  C  L  F  F  V  L  T  W  P  F  Q  S  T  F  S  L  F  S  V  Y  I  I  I  A  L  Y  Y  D  W  V  N  Y  S  V  Q  N  N  *  V  K  V  P  K  D  A  L  P  A  V  A  P  K  D  A  L  Q  A  E  A  Q  A  G  V  G  A  V  A  K  V  C  P  G  L  T  S  V  A  C  R  I  S  F  N  V  *  P  F  R  *  F  F  L  L  A  S  F  Y  R  *  D  C  W  N  H  Q  *  L  R  V  P  S  C  C  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0038L16.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63281" stop="63018"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLEFKILHSLNGVTCIVLYLPYFPLWILPNCYFHYGHAEVEVKSKQLWRKLVKWRDWDIKLSSFWKFCRSPSRSRSPAPAVSQIYMF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0038L16.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62874" stop="62674"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LQRSKQLSESPKRRTPSSSPKRRTPSRSPSRSRSRSQSLSRSYFCGLSYIFQCLTVSLIFSPRLFL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="68151" e_stop="68063"/>
            <exon e_start="67795" e_stop="67730"/>
            <exon e_start="67627" e_stop="67553"/>
            <exon e_start="67457" e_stop="67343"/>
            <exon e_start="67257" e_stop="67211"/>
            <exon e_start="67095" e_stop="67038"/>
            <exon e_start="65268" e_stop="65219"/>
            <exon e_start="65091" e_stop="65035"/>
            <exon e_start="64951" e_stop="64830"/>
            <exon e_start="64747" e_stop="64649"/>
            <exon e_start="63617" e_stop="63530"/>
            <exon e_start="63443" e_stop="63042"/>
            <exon e_start="62868" e_stop="62753"/>
            <exon e_start="62673" e_stop="62401"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.611" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.732" acc_prob="0.949" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.791" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.433" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.846" e_score="1.000"/>
          <exon-intron don_prob="0.956" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="0.998"/>
          <exon-intron don_prob="0.906" acc_prob="0.964" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="68151" e_stop="68063" e_length="89"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="68062" i_stop="67796" i_length="267"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="67795" e_stop="67730" e_length="66"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.979">
            <gDNA_intron_boundary i_start="67729" i_stop="67628" i_length="102"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="67627" e_stop="67553" e_length="75"/>
          </exon>
          <intron i_serial="3" don_prob="0.964" acc_prob="0.990">
            <gDNA_intron_boundary i_start="67552" i_stop="67458" i_length="95"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="67457" e_stop="67343" e_length="115"/>
          </exon>
          <intron i_serial="4" don_prob="0.982" acc_prob="0.999">
            <gDNA_intron_boundary i_start="67342" i_stop="67258" i_length="85"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="67257" e_stop="67211" e_length="47"/>
          </exon>
          <intron i_serial="5" don_prob="0.611" acc_prob="0.999">
            <gDNA_intron_boundary i_start="67210" i_stop="67096" i_length="115"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="67095" e_stop="67038" e_length="58"/>
          </exon>
          <intron i_serial="6" don_prob="0.732" acc_prob="0.949">
            <gDNA_intron_boundary i_start="67037" i_stop="65269" i_length="1769"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="65268" e_stop="65219" e_length="50"/>
          </exon>
          <intron i_serial="7" don_prob="0.995" acc_prob="0.963">
            <gDNA_intron_boundary i_start="65218" i_stop="65092" i_length="127"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="65091" e_stop="65035" e_length="57"/>
          </exon>
          <intron i_serial="8" don_prob="0.978" acc_prob="0.791">
            <gDNA_intron_boundary i_start="65034" i_stop="64952" i_length="83"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="64951" e_stop="64830" e_length="122"/>
          </exon>
          <intron i_serial="9" don_prob="0.982" acc_prob="0.433">
            <gDNA_intron_boundary i_start="64829" i_stop="64748" i_length="82"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="64747" e_stop="64649" e_length="99"/>
          </exon>
          <intron i_serial="10" don_prob="0.999" acc_prob="0.846">
            <gDNA_intron_boundary i_start="64648" i_stop="63618" i_length="1031"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="63617" e_stop="63530" e_length="88"/>
          </exon>
          <intron i_serial="11" don_prob="0.956" acc_prob="0.965">
            <gDNA_intron_boundary i_start="63529" i_stop="63444" i_length="86"/>
          </intron>
          <exon e_serial="12" e_score="0.998">
            <gDNA_exon_boundary e_start="63443" e_stop="63042" e_length="402"/>
          </exon>
          <intron i_serial="12" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="63041" i_stop="62869" i_length="173"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="62868" e_stop="62753" e_length="116"/>
          </exon>
          <intron i_serial="13" don_prob="0.906" acc_prob="0.964">
            <gDNA_intron_boundary i_start="62752" i_stop="62674" i_length="79"/>
          </intron>
          <exon e_serial="14" e_score="0.993">
            <gDNA_exon_boundary e_start="62673" e_stop="62401" e_length="273"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68151" stop="68063"/>
              <exon start="67795" stop="67730"/>
              <exon start="67627" stop="67553"/>
              <exon start="67457" stop="67343"/>
              <exon start="67257" stop="67211"/>
              <exon start="67095" stop="67038"/>
              <exon start="65268" stop="65219"/>
              <exon start="65091" stop="65035"/>
              <exon start="64951" stop="64830"/>
              <exon start="64747" stop="64649"/>
              <exon start="63617" stop="63530"/>
              <exon start="63443" stop="63042"/>
              <exon start="62868" stop="62753"/>
              <exon start="62673" stop="62401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U313756" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAACAATGAGTCGGTCGAGTAGGACACTTTATGTTGGCAATCTTCCTGGTGATGTTCGTGAGCGTGAAGTGGAAGATCTCTTTTACAAG : TATGGACCGATTGCACATATTGAGCTGAAAATTCCACCAAGACCCCCTGGTTATGCTTTTGTTGAG : TTTGAAGAGGCTCGTGATGCTGAAGATGCTATTCGTGGTCGTGATGGCTATGATTTTGATGGGCACCGTCTGCGG : GTTGAGCTTGCACATGGCGGGCGTGGTAACTCATCATCAAATGATCGTTATGGTGGTGGCGGTGGCGGCCGTGGTCAGCGTGGTGGAGGAGTGTCAAGACGTTCAGATTATCGAG : TGTTAGTTACAGGATTACCCCATTCAGCATCGTGGCAGGATCTCAAG : GATCACATGCGCCGTGCTGGGGATGTTTGTTTCTCCCAAGTTTTCCGTGACGGGAGTG : GAACCACTGGTATAATTGATTATACAAACTATGATGACATGAAATATGCT : ATCAAAAAGCTTGATGACTCTGAGTTTCGAAATGCCTTTTCTCGTGCGACAATTCGA : GTTAAAGAATATGACCGCAGTCGAAGTCGCAGCCGCAGTCGCAGTCGCTCTTACTCCAGAGGGAAGAGTGTTAGTCGAAGCCGAAGCCGTAGCCGAAGTAGAAGCCGAAGCAAGAGCAAAAG : CAAATCTCCTAAAGTTAAGTCTTCAAAGCGCTCAAGATCTCGTTCAAGGTCTGTGTCTTCTCAGTCTCGTTCTGGGTCAAAAGGACGTCCTGTCTCAAG : ATTTTGGATATGTGCGGCGGTTTGTGGATTTGCATATTAGGATCTTGAGTGGATAATGGTCTTGCCTGCAACTCTTTTTGTTGTGGAG : ATTGGGATCATGAAGATCACGGATTCTATGGTGGAGCTGGACTGGGGAACCAACTGCCACCTGAATTTGGATCACCACCTATTTTTTGGTAGAAGCATGTTCTAACAAAGCGAAATAAAGACTAGTTCATTCTTTTGGTATCCTGCTAATTGGTCTCTTTGACTGCTCGAATTTAAAATATTACATAGTCTCAATGGTGTAACTTGCATTGTTTTATACTTGCCATATTTTCCACTCTGGATTCTGCCAAATTGCTACTTTCATTATGGTCATGCTGAGGTGGAAGTGAAATCAAAGCAGTTGTGGAGGAAACTTGTTAAGTGGCGGGACTGGGATATTAAATTAAGTTCTTTCTGGAAATTTTGCAGATCTCCATCAAGGTCCAGATCACCAGCACCAGCT : CGTTCAAAACAATTAAGTGAAAGTCCCAAAAGACGCACTCCCAGCAGTAGCCCCAAAAGACGCACTCCAAGCAGAAGCCCAAGCCGGAGTAGGAGCCGTAGCCAAAGTTTGTCCAG : GTAAGATTGCTGGAATCATCAGTGATTGAGGGTGCCATCATGCTGTGTTTGAGCAGCCTGGTCCACAGTTGGGAGCCCAAGTGACCGGAAGAGTCTGTTGCTCTGCTTACATCAAAATATTTCTGTGTCATTGAACCATGTCAAGACTGTAATAATTATTATACTTGTTTTTGTAGCTCTTAATCTTGGTAAAAGACTGCAATATAGTAGATGATATTGTGAAAAACGGAATTTAATTTCCTTGAATTGCAGATTATTGTTGGTCGACTGATG</gDNA_template>
            <first_frame> E  Q  *  V  G  R  V  G  H  F  M  L  A  I  F  L  V  M  F  V  S  V  K  W  K  I  S  F  T  S :   M  D  R  L  H  I  L  S  *  K  F  H  Q  D  P  L  V  M  L  L  L  S :   L  K  R  L  V  M  L  K  M  L  F  V  V  V  M  A  M  I  L  M  G  T  V  C  G :   L  S  L  H  M  A  G  V  V  T  H  H  Q  M  I  V  M  V  V  A  V  A  A  V  V  S  V  V  E  E  C  Q  D  V  Q  I  I  E  :  C  *  L  Q  D  Y  P  I  Q  H  R  G  R  I  S  R :   I  T  C  A  V  L  G  M  F  V  S  P  K  F  S  V  T  G  V  :  E  P  L  V  *  L  I  I  Q  T  M  M  T  *  N  M  L :   S  K  S  L  M  T  L  S  F  E  M  P  F  L  V  R  Q  F  E :   L  K  N  M  T  A  V  E  V  A  A  A  V  A  V  A  L  T  P  E  G  R  V  L  V  E  A  E  A  V  A  E  V  E  A  E  A  R  A  K   : A  N  L  L  K  L  S  L  Q  S  A  Q  D  L  V  Q  G  L  C  L  L  S  L  V  L  G  Q  K  D  V  L  S  Q   : D  F  G  Y  V  R  R  F  V  D  L  H  I  R  I  L  S  G  *  W  S  C  L  Q  L  F  L  L  W  R :   L  G  S  *  R  S  R  I  L  W  W  S  W  T  G  E  P  T  A  T  *  I  W  I  T  T  Y  F  L  V  E  A  C  S  N  K  A  K  *  R  L  V  H  S  F  G  I  L  L  I  G  L  F  D  C  S  N  L  K  Y  Y  I  V  S  M  V  *  L  A  L  F  Y  T  C  H  I  F  H  S  G  F  C  Q  I  A  T  F  I  M  V  M  L  R  W  K  *  N  Q  S  S  C  G  G  N  L  L  S  G  G  T  G  I  L  N  *  V  L  S  G  N  F  A  D  L  H  Q  G  P  D  H  Q  H  Q  L :   V  Q  N  N  *  V  K  V  P  K  D  A  L  P  A  V  A  P  K  D  A  L  Q  A  E  A  Q  A  G  V  G  A  V  A  K  V  C  P   : G  K  I  A  G  I  I  S  D  *  G  C  H  H  A  V  F  E  Q  P  G  P  Q  L  G  A  Q  V  T  G  R  V  C  C  S  A  Y  I  K  I  F  L  C  H  *  T  M  S  R  L  *  *  L  L  Y  L  F  L  *  L  L  I  L  V  K  D  C  N  I  V  D  D  I  V  K  N  G  I  *  F  P  *  I  A  D  Y  C  W  S  T  D  </first_frame>
            <second_frame>  N  N  E  S  V  E  *  D  T  L  C  W  Q  S  S  W  *  C  S  *  A  *  S  G  R  S  L  L  Q   : V  W  T  D  C  T  Y  *  A  E  N  S  T  K  T  P  W  L  C  F  C  *   : V  *  R  G  S  *  C  *  R  C  Y  S  W  S  *  W  L  *  F  *  W  A  P  S  A   : G  *  A  C  T  W  R  A  W  *  L  I  I  K  *  S  L  W  W  W  R  W  R  P  W  S  A  W  W  R  S  V  K  T  F  R  L  S  S :   V  S  Y  R  I  T  P  F  S  I  V  A  G  S  Q   : G  S  H  A  P  C  W  G  C  L  F  L  P  S  F  P  *  R  E  W :   N  H  W  Y  N  *  L  Y  K  L  *  *  H  E  I  C   : Y  Q  K  A  *  *  L  *  V  S  K  C  L  F  S  C  D  N  S   : S  *  R  I  *  P  Q  S  K  S  Q  P  Q  S  Q  S  L  L  L  Q  R  E  E  C  *  S  K  P  K  P  *  P  K  *  K  P  K  Q  E  Q  K  :  Q  I  S  *  S  *  V  F  K  A  L  K  I  S  F  K  V  C  V  F  S  V  S  F  W  V  K  R  T  S  C  L  K  :  I  L  D  M  C  G  G  L  W  I  C  I  L  G  S  *  V  D  N  G  L  A  C  N  S  F  C  C  G   : D  W  D  H  E  D  H  G  F  Y  G  G  A  G  L  G  N  Q  L  P  P  E  F  G  S  P  P  I  F  W  *  K  H  V  L  T  K  R  N  K  D  *  F  I  L  L  V  S  C  *  L  V  S  L  T  A  R  I  *  N  I  T  *  S  Q  W  C  N  L  H  C  F  I  L  A  I  F  S  T  L  D  S  A  K  L  L  L  S  L  W  S  C  *  G  G  S  E  I  K  A  V  V  E  E  T  C  *  V  A  G  L  G  Y  *  I  K  F  F  L  E  I  L  Q  I  S  I  K  V  Q  I  T  S  T  S   : S  F  K  T  I  K  *  K  S  Q  K  T  H  S  Q  Q  *  P  Q  K  T  H  S  K  Q  K  P  K  P  E  *  E  P  *  P  K  F  V  Q  :  V  R  L  L  E  S  S  V  I  E  G  A  I  M  L  C  L  S  S  L  V  H  S  W  E  P  K  *  P  E  E  S  V  A  L  L  T  S  K  Y  F  C  V  I  E  P  C  Q  D  C  N  N  Y  Y  T  C  F  C  S  S  *  S  W  *  K  T  A  I  *  *  M  I  L  *  K  T  E  F  N  F  L  E  L  Q  I  I  V  G  R  L  M </second_frame>
            <third_frame>   T  M  S  R  S  S  R  T  L  Y  V  G  N  L  P  G  D  V  R  E  R  E  V  E  D  L  F  Y  K  :  Y  G  P  I  A  H  I  E  L  K  I  P  P  R  P  P  G  Y  A  F  V  E  :  F  E  E  A  R  D  A  E  D  A  I  R  G  R  D  G  Y  D  F  D  G  H  R  L  R  :  V  E  L  A  H  G  G  R  G  N  S  S  S  N  D  R  Y  G  G  G  G  G  G  R  G  Q  R  G  G  G  V  S  R  R  S  D  Y  R   : V  L  V  T  G  L  P  H  S  A  S  W  Q  D  L  K  :  D  H  M  R  R  A  G  D  V  C  F  S  Q  V  F  R  D  G  S   : G  T  T  G  I  I  D  Y  T  N  Y  D  D  M  K  Y  A  :  I  K  K  L  D  D  S  E  F  R  N  A  F  S  R  A  T  I  R  :  V  K  E  Y  D  R  S  R  S  R  S  R  S  R  S  R  S  Y  S  R  G  K  S  V  S  R  S  R  S  R  S  R  S  R  S  R  S  K  S  K  S :   K  S  P  K  V  K  S  S  K  R  S  R  S  R  S  R  S  V  S  S  Q  S  R  S  G  S  K  G  R  P  V  S  R :   F  W  I  C  A  A  V  C  G  F  A  Y  *  D  L  E  W  I  M  V  L  P  A  T  L  F  V  V  E  :  I  G  I  M  K  I  T  D  S  M  V  E  L  D  W  G  T  N  C  H  L  N  L  D  H  H  L  F  F  G  R  S  M  F  *  Q  S  E  I  K  T  S  S  F  F  W  Y  P  A  N  W  S  L  *  L  L  E  F  K  I  L  H  S  L  N  G  V  T  C  I  V  L  Y  L  P  Y  F  P  L  W  I  L  P  N  C  Y  F  H  Y  G  H  A  E  V  E  V  K  S  K  Q  L  W  R  K  L  V  K  W  R  D  W  D  I  K  L  S  S  F  W  K  F  C  R  S  P  S  R  S  R  S  P  A  P  A  :  R  S  K  Q  L  S  E  S  P  K  R  R  T  P  S  S  S  P  K  R  R  T  P  S  R  S  P  S  R  S  R  S  R  S  Q  S  L  S  R :   *  D  C  W  N  H  Q  *  L  R  V  P  S  C  C  V  *  A  A  W  S  T  V  G  S  P  S  D  R  K  S  L  L  L  C  L  H  Q  N  I  S  V  S  L  N  H  V  K  T  V  I  I  I  I  L  V  F  V  A  L  N  L  G  K  R  L  Q  Y  S  R  *  Y  C  E  K  R  N  L  I  S  L  N  C  R  L  L  L  V  D  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0038L16.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68149" stop="68063"/>
                    <exon start="67795" stop="67730"/>
                    <exon start="67627" stop="67553"/>
                    <exon start="67457" stop="67343"/>
                    <exon start="67257" stop="67211"/>
                    <exon start="67095" stop="67038"/>
                    <exon start="65268" stop="65219"/>
                    <exon start="65091" stop="65035"/>
                    <exon start="64951" stop="64830"/>
                    <exon start="64747" stop="64649"/>
                    <exon start="63617" stop="63578"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>813</number_coding_nucleotides>
                  <number_encoded_amino_acids>271</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMSRSSRTLYVGNLPGDVREREVEDLFYKYGPIAHIELKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAHGGRGNSSSNDRYGGGGGGRGQRGGGVSRRSDYRVLVTGLPHSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIIDYTNYDDMKYAIKKLDDSEFRNAFSRATIRVKEYDRSRSRSRSRSRSYSRGKSVSRSRSRSRSRSRSKSKSKSPKVKSSKRSRSRSRSVSSQSRSGSKGRPVSRFWICAAVCGFAY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0038L16.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63281" stop="63042"/>
                    <exon start="62868" stop="62753"/>
                    <exon start="62673" stop="62670"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>357</number_coding_nucleotides>
                  <number_encoded_amino_acids>119</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLEFKILHSLNGVTCIVLYLPYFPLWILPNCYFHYGHAEVEVKSKQLWRKLVKWRDWDIKLSSFWKFCRSPSRSRSPAPARSKQLSESPKRRTPSSSPKRRTPSRSPSRSRSRSQSLSR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="70381" PGL_stop="74015"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="70381" e_stop="70730"/>
            <exon e_start="73519" e_stop="74015"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="0.991"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="70381" e_stop="70730" e_length="350"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="70731" i_stop="73518" i_length="2788"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="73519" e_stop="74015" e_length="497"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70381" stop="70730"/>
              <exon start="73519" stop="74005"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U329875" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70700" stop="70730"/>
              <exon start="73519" stop="74015"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339413" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGATCTACCTCTGAAGTATTTTTTTTAAAAAATAGATGGTATACATAAAAAGATCAAAATAAAATAGTCCAACCCCAAAGACCATTTTGATCAGTAAAAAATGGCGAGTGGAAGAGCAGTAGAAGCCCTTCGAGCTTACAGATCAGTGTTGAAGGCCACTCATAAAGCCTTCGCCGGAGATACTTTCATGCTCCAACAATCCGCCGCCGAGGTCAGAAAGAAATTCGAGGAGAATCGCCACGTCTCATCGGAGGCTGATATTCAGAGGCTATTGGAGGATGCAACTGAGGCCTCTTCGTTCATATCTACTATGATTATCCAAGCCAAAGCTACACCTTCCGGTGCTTTTG : TGGTAAAGCCTGAGAAAGAACATGCTGGAGCAACGCTCGAGATTCCTTCTGAAGAGATTCTTAAGAAGTCAGCTTAAGCATATTCAAGGAAGCTCAGAGCATTTAGACTGCTGTGTTAGCACTTTAATCTTTCATAAACTGTGAGTTTTTCTTGTGAGTTTCTCCACTTGGAATTTTCTCAGAGGTTCTGCTTTCTCCAAGGTCATCGCGTTTCAGTCTTTCCTGTTTTTGTTACATTTAGGCCATAATTAGTGGATACTGCATCCATCTATCTACATCTTTCTCCTTTGTGTAGCTACAATCACCTTACAAAGCAAGCAGGTGCAGCTTTGCTTAAACATGGCTATTGTGATAAATGATTAAAAGGTTAGTTGGACCAAATGTGCCACTAAATAGAGTTTAAATTTTATTTATTGACGGTGTAAAATATTTGCACAAGTGTAATTTTCCTTGCTCCAATAGGGCATGATCCCCTTTTGCACCAACTAATGCACAAT</gDNA_template>
            <first_frame> *  S  T  S  E  V  F  F  L  K  N  R  W  Y  T  *  K  D  Q  N  K  I  V  Q  P  Q  R  P  F  *  S  V  K  N  G  E  W  K  S  S  R  S  P  S  S  L  Q  I  S  V  E  G  H  S  *  S  L  R  R  R  Y  F  H  A  P  T  I  R  R  R  G  Q  K  E  I  R  G  E  S  P  R  L  I  G  G  *  Y  S  E  A  I  G  G  C  N  *  G  L  F  V  H  I  Y  Y  D  Y  P  S  Q  S  Y  T  F  R  C  F  C :   G  K  A  *  E  R  T  C  W  S  N  A  R  D  S  F  *  R  D  S  *  E  V  S  L  S  I  F  K  E  A  Q  S  I  *  T  A  V  L  A  L  *  S  F  I  N  C  E  F  F  L  *  V  S  P  L  G  I  F  S  E  V  L  L  S  P  R  S  S  R  F  S  L  S  C  F  C  Y  I  *  A  I  I  S  G  Y  C  I  H  L  S  T  S  F  S  F  V  *  L  Q  S  P  Y  K  A  S  R  C  S  F  A  *  T  W  L  L  *  *  M  I  K  R  L  V  G  P  N  V  P  L  N  R  V  *  I  L  F  I  D  G  V  K  Y  L  H  K  C  N  F  P  C  S  N  R  A  *  S  P  F  A  P  T  N  A  Q  </first_frame>
            <second_frame>  D  L  P  L  K  Y  F  F  *  K  I  D  G  I  H  K  K  I  K  I  K  *  S  N  P  K  D  H  F  D  Q  *  K  M  A  S  G  R  A  V  E  A  L  R  A  Y  R  S  V  L  K  A  T  H  K  A  F  A  G  D  T  F  M  L  Q  Q  S  A  A  E  V  R  K  K  F  E  E  N  R  H  V  S  S  E  A  D  I  Q  R  L  L  E  D  A  T  E  A  S  S  F  I  S  T  M  I  I  Q  A  K  A  T  P  S  G  A  F   : V  V  K  P  E  K  E  H  A  G  A  T  L  E  I  P  S  E  E  I  L  K  K  S  A  *  A  Y  S  R  K  L  R  A  F  R  L  L  C  *  H  F  N  L  S  *  T  V  S  F  S  C  E  F  L  H  L  E  F  S  Q  R  F  C  F  L  Q  G  H  R  V  S  V  F  P  V  F  V  T  F  R  P  *  L  V  D  T  A  S  I  Y  L  H  L  S  P  L  C  S  Y  N  H  L  T  K  Q  A  G  A  A  L  L  K  H  G  Y  C  D  K  *  L  K  G  *  L  D  Q  M  C  H  *  I  E  F  K  F  Y  L  L  T  V  *  N  I  C  T  S  V  I  F  L  A  P  I  G  H  D  P  L  L  H  Q  L  M  H  N </second_frame>
            <third_frame>   I  Y  L  *  S  I  F  F  K  K  *  M  V  Y  I  K  R  S  K  *  N  S  P  T  P  K  T  I  L  I  S  K  K  W  R  V  E  E  Q  *  K  P  F  E  L  T  D  Q  C  *  R  P  L  I  K  P  S  P  E  I  L  S  C  S  N  N  P  P  P  R  S  E  R  N  S  R  R  I  A  T  S  H  R  R  L  I  F  R  G  Y  W  R  M  Q  L  R  P  L  R  S  Y  L  L  *  L  S  K  P  K  L  H  L  P  V  L  L  :  W  *  S  L  R  K  N  M  L  E  Q  R  S  R  F  L  L  K  R  F  L  R  S  Q  L  K  H  I  Q  G  S  S  E  H  L  D  C  C  V  S  T  L  I  F  H  K  L  *  V  F  L  V  S  F  S  T  W  N  F  L  R  G  S  A  F  S  K  V  I  A  F  Q  S  F  L  F  L  L  H  L  G  H  N  *  W  I  L  H  P  S  I  Y  I  F  L  L  C  V  A  T  I  T  L  Q  S  K  Q  V  Q  L  C  L  N  M  A  I  V  I  N  D  *  K  V  S  W  T  K  C  A  T  K  *  S  L  N  F  I  Y  *  R  C  K  I  F  A  Q  V  *  F  S  L  L  Q  *  G  M  I  P  F  C  T  N  *  C  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0038L16.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70478" stop="70730"/>
                    <exon start="73519" stop="73595"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>327</number_coding_nucleotides>
                  <number_encoded_amino_acids>109</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMASGRAVEALRAYRSVLKATHKAFAGDTFMLQQSAAEVRKKFEENRHVSSEADIQRLLEDATEASSFISTMIIQAKATPSGAFVVKPEKEHAGATLEIPSEEILKKSA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="86279" PGL_stop="90930"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="86279" e_stop="86951"/>
            <exon e_start="87055" e_stop="87202"/>
            <exon e_start="88664" e_stop="88743"/>
            <exon e_start="89297" e_stop="89380"/>
            <exon e_start="89465" e_stop="89539"/>
            <exon e_start="90045" e_stop="90137"/>
            <exon e_start="90431" e_stop="90930"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.000" e_score="0.997"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="86279" e_stop="86951" e_length="673"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.000">
            <gDNA_intron_boundary i_start="86952" i_stop="87054" i_length="103"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="87055" e_stop="87202" e_length="148"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="87203" i_stop="88663" i_length="1461"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="88664" e_stop="88743" e_length="80"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="88744" i_stop="89296" i_length="553"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="89297" e_stop="89380" e_length="84"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.991">
            <gDNA_intron_boundary i_start="89381" i_stop="89464" i_length="84"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="89465" e_stop="89539" e_length="75"/>
          </exon>
          <intron i_serial="5" don_prob="0.987" acc_prob="0.998">
            <gDNA_intron_boundary i_start="89540" i_stop="90044" i_length="505"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="90045" e_stop="90137" e_length="93"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="90138" i_stop="90430" i_length="293"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="90431" e_stop="90930" e_length="500"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86279" stop="86951"/>
              <exon start="87055" stop="87202"/>
              <exon start="88664" stop="88743"/>
              <exon start="89297" stop="89380"/>
              <exon start="89465" stop="89539"/>
              <exon start="90045" stop="90137"/>
              <exon start="90431" stop="90930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317504" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTTTCTCTCTCTTTTTCAACACAATTTTGAGAGAAGAAAAATAAATAAATCATGACTTCCGAATTGATTTATCGTGGACCGGAATCAGTTCCGGTGACCGACGGTTACACTCCCAAACCACATAAACCATGGTTTACTGTAATTCGTCCCCTTCGTTACTTGCTCCGAGAACAGAGAATTGTTTTTCTATTCGCAGGCATTGCTATCGCTTCTCTAATTTTTGCTTTTTTACCGTCTTCTCGTTCCTCCGGAGGATCGAGCTACGCTAACACCGGGATCTACGATTCGTACTTACCGTCGGAGTCGACTGAGTCTCAGGTGGCTCACCGGATGATCTATCATAATCGGGTCGGGTTCGGGTCGATTAATTCCGGTGGGAAGATCCCGTTGGGATTAAAGCGGAAGGTTTTGAGGATTGTGGTGACTGGTGGTGCTGGTTTTGTTGGTAGTCATTTAGTGGATCGTTTGATTGCGAGAGGTGATAGTGTGATCGTCGTTGATAATTTCTTCACCGGACGGAAAGAGAACGTTATGCATCATTTTGGTAACCCTAGGTTTGAGCTTATTAGACATGATGTTGTTGAGCCACTTTTGCTTGAAGTTGACCAGATCTATCATCTCGCTTGCCCTGCTTCTCCCGTTCATTACAAGCATAATCCCGTCAAAACTATC : AAGACTAATGTAGTTGGTACTTTGAACATGCTGGGATTGGCTAAAAGAGTCGGTGCGAGGTTTTTGCTAACCAGCACTAGCGAAGTATATGGTGATCCTTTAGAACATCCACAGAAGGAGACATACTGGGGCAATGTTAATCCTATTG : GTGTCCGAAGTTGCTACGATGAGGGAAAACGAACAGCTGAAACATTGACAATGGATTATCACAGAGGTGCAGAAGTTGAG : GTGAGAATCGCTAGGATCTTTAACACTTATGGACCTCGTATGTGTATTGATGACGGTCGCGTTGTCAGCAACTTTGTCGCTCAG : GCTTTAAGGAAAGAGCCTTTGACAGTTTATGGTGATGGGAAACAAACAAGAAGTTTCCAATTTGTTTCAGATCTG : GTTGAAGGCTTAATGCGGTTGATGGAAGGAGAACATGTCGGACCCTTCAACCTCGGAAACCCTGGTGAATTCACAATGCTTGAACTTGCTAAG : GTGGTCCAGGAAACCATTGACCCAAATGCACAGATTGTACACAAACCAAACACAGAAGATGACCCACACAAGCGAAAACCTGATATCTCAAAGGCTAAAGAGTTACTTGGTTGGGAACCGAAAGTGGCTCTTAGAAATGGTTTGCCTATGATGGTTCAAGACTTCAGGCAACGTATTTTCGGTGATCACAAAGAAGAAAGTGCAAAGATCACCACAGCTTAATAGAAAAGAAAAGTGTGTTATGTTTGGATATTTGTTAAACTTGGTAAGGGGTGAAACGCACGCGAAGAAAAGACGACTCTCTTGTGTTGATGTTAGTTTCAAGCAGAAGTGCAGGCAGCAGAAGACTGAGCTGAGCTCCCCATGTACTTCTTTTGAATAGTTGGTTCTTTGTCAATTTTGCAATTCTATTATTAGTATTATTATCCTTTTGTTAACAGTTGATGTAGTAGACCAACTTTCATTATTCTCATAAGAATAAAACTGGTACGTATTTTCCC</gDNA_template>
            <first_frame> L  F  S  L  F  F  N  T  I  L  R  E  E  K  *  I  N  H  D  F  R  I  D  L  S  W  T  G  I  S  S  G  D  R  R  L  H  S  Q  T  T  *  T  M  V  Y  C  N  S  S  P  S  L  L  A  P  R  T  E  N  C  F  S  I  R  R  H  C  Y  R  F  S  N  F  C  F  F  T  V  F  S  F  L  R  R  I  E  L  R  *  H  R  D  L  R  F  V  L  T  V  G  V  D  *  V  S  G  G  S  P  D  D  L  S  *  S  G  R  V  R  V  D  *  F  R  W  E  D  P  V  G  I  K  A  E  G  F  E  D  C  G  D  W  W  C  W  F  C  W  *  S  F  S  G  S  F  D  C  E  R  *  *  C  D  R  R  *  *  F  L  H  R  T  E  R  E  R  Y  A  S  F  W  *  P  *  V  *  A  Y  *  T  *  C  C  *  A  T  F  A  *  S  *  P  D  L  S  S  R  L  P  C  F  S  R  S  L  Q  A  *  S  R  Q  N  Y   : Q  D  *  C  S  W  Y  F  E  H  A  G  I  G  *  K  S  R  C  E  V  F  A  N  Q  H  *  R  S  I  W  *  S  F  R  T  S  T  E  G  D  I  L  G  Q  C  *  S  Y  W :   C  P  K  L  L  R  *  G  K  T  N  S  *  N  I  D  N  G  L  S  Q  R  C  R  S  *   : G  E  N  R  *  D  L  *  H  L  W  T  S  Y  V  Y  *  *  R  S  R  C  Q  Q  L  C  R  S   : G  F  K  E  R  A  F  D  S  L  W  *  W  E  T  N  K  K  F  P  I  C  F  R  S   : G  *  R  L  N  A  V  D  G  R  R  T  C  R  T  L  Q  P  R  K  P  W  *  I  H  N  A  *  T  C  *   : G  G  P  G  N  H  *  P  K  C  T  D  C  T  Q  T  K  H  R  R  *  P  T  Q  A  K  T  *  Y  L  K  G  *  R  V  T  W  L  G  T  E  S  G  S  *  K  W  F  A  Y  D  G  S  R  L  Q  A  T  Y  F  R  *  S  Q  R  R  K  C  K  D  H  H  S  L  I  E  K  K  S  V  L  C  L  D  I  C  *  T  W  *  G  V  K  R  T  R  R  K  D  D  S  L  V  L  M  L  V  S  S  R  S  A  G  S  R  R  L  S  *  A  P  H  V  L  L  L  N  S  W  F  F  V  N  F  A  I  L  L  L  V  L  L  S  F  C  *  Q  L  M  *  *  T  N  F  H  Y  S  H  K  N  K  T  G  T  Y  F  P </first_frame>
            <second_frame>  F  S  L  S  F  S  T  Q  F  *  E  K  K  N  K  *  I  M  T  S  E  L  I  Y  R  G  P  E  S  V  P  V  T  D  G  Y  T  P  K  P  H  K  P  W  F  T  V  I  R  P  L  R  Y  L  L  R  E  Q  R  I  V  F  L  F  A  G  I  A  I  A  S  L  I  F  A  F  L  P  S  S  R  S  S  G  G  S  S  Y  A  N  T  G  I  Y  D  S  Y  L  P  S  E  S  T  E  S  Q  V  A  H  R  M  I  Y  H  N  R  V  G  F  G  S  I  N  S  G  G  K  I  P  L  G  L  K  R  K  V  L  R  I  V  V  T  G  G  A  G  F  V  G  S  H  L  V  D  R  L  I  A  R  G  D  S  V  I  V  V  D  N  F  F  T  G  R  K  E  N  V  M  H  H  F  G  N  P  R  F  E  L  I  R  H  D  V  V  E  P  L  L  L  E  V  D  Q  I  Y  H  L  A  C  P  A  S  P  V  H  Y  K  H  N  P  V  K  T  I  :  K  T  N  V  V  G  T  L  N  M  L  G  L  A  K  R  V  G  A  R  F  L  L  T  S  T  S  E  V  Y  G  D  P  L  E  H  P  Q  K  E  T  Y  W  G  N  V  N  P  I   : G  V  R  S  C  Y  D  E  G  K  R  T  A  E  T  L  T  M  D  Y  H  R  G  A  E  V  E  :  V  R  I  A  R  I  F  N  T  Y  G  P  R  M  C  I  D  D  G  R  V  V  S  N  F  V  A  Q  :  A  L  R  K  E  P  L  T  V  Y  G  D  G  K  Q  T  R  S  F  Q  F  V  S  D  L  :  V  E  G  L  M  R  L  M  E  G  E  H  V  G  P  F  N  L  G  N  P  G  E  F  T  M  L  E  L  A  K  :  V  V  Q  E  T  I  D  P  N  A  Q  I  V  H  K  P  N  T  E  D  D  P  H  K  R  K  P  D  I  S  K  A  K  E  L  L  G  W  E  P  K  V  A  L  R  N  G  L  P  M  M  V  Q  D  F  R  Q  R  I  F  G  D  H  K  E  E  S  A  K  I  T  T  A  *  *  K  R  K  V  C  Y  V  W  I  F  V  K  L  G  K  G  *  N  A  R  E  E  K  T  T  L  L  C  *  C  *  F  Q  A  E  V  Q  A  A  E  D  *  A  E  L  P  M  Y  F  F  *  I  V  G  S  L  S  I  L  Q  F  Y  Y  *  Y  Y  Y  P  F  V  N  S  *  C  S  R  P  T  F  I  I  L  I  R  I  K  L  V  R  I  F   </second_frame>
            <third_frame>   F  L  S  L  F  Q  H  N  F  E  R  R  K  I  N  K  S  *  L  P  N  *  F  I  V  D  R  N  Q  F  R  *  P  T  V  T  L  P  N  H  I  N  H  G  L  L  *  F  V  P  F  V  T  C  S  E  N  R  E  L  F  F  Y  S  Q  A  L  L  S  L  L  *  F  L  L  F  Y  R  L  L  V  P  P  E  D  R  A  T  L  T  P  G  S  T  I  R  T  Y  R  R  S  R  L  S  L  R  W  L  T  G  *  S  I  I  I  G  S  G  S  G  R  L  I  P  V  G  R  S  R  W  D  *  S  G  R  F  *  G  L  W  *  L  V  V  L  V  L  L  V  V  I  *  W  I  V  *  L  R  E  V  I  V  *  S  S  L  I  I  S  S  P  D  G  K  R  T  L  C  I  I  L  V  T  L  G  L  S  L  L  D  M  M  L  L  S  H  F  C  L  K  L  T  R  S  I  I  S  L  A  L  L  L  P  F  I  T  S  I  I  P  S  K  L  S :   R  L  M  *  L  V  L  *  T  C  W  D  W  L  K  E  S  V  R  G  F  C  *  P  A  L  A  K  Y  M  V  I  L  *  N  I  H  R  R  R  H  T  G  A  M  L  I  L  L  :  V  S  E  V  A  T  M  R  E  N  E  Q  L  K  H  *  Q  W  I  I  T  E  V  Q  K  L  R :   *  E  S  L  G  S  L  T  L  M  D  L  V  C  V  L  M  T  V  A  L  S  A  T  L  S  L  R :   L  *  G  K  S  L  *  Q  F  M  V  M  G  N  K  Q  E  V  S  N  L  F  Q  I  W :   L  K  A  *  C  G  *  W  K  E  N  M  S  D  P  S  T  S  E  T  L  V  N  S  Q  C  L  N  L  L  R :   W  S  R  K  P  L  T  Q  M  H  R  L  Y  T  N  Q  T  Q  K  M  T  H  T  S  E  N  L  I  S  Q  R  L  K  S  Y  L  V  G  N  R  K  W  L  L  E  M  V  C  L  *  W  F  K  T  S  G  N  V  F  S  V  I  T  K  K  K  V  Q  R  S  P  Q  L  N  R  K  E  K  C  V  M  F  G  Y  L  L  N  L  V  R  G  E  T  H  A  K  K  R  R  L  S  C  V  D  V  S  F  K  Q  K  C  R  Q  Q  K  T  E  L  S  S  P  C  T  S  F  E  *  L  V  L  C  Q  F  C  N  S  I  I  S  I  I  I  L  L  L  T  V  D  V  V  D  Q  L  S  L  F  S  *  E  *  N  W  Y  V  F  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0038L16.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86328" stop="86951"/>
                    <exon start="87055" stop="87202"/>
                    <exon start="88664" stop="88743"/>
                    <exon start="89297" stop="89380"/>
                    <exon start="89465" stop="89539"/>
                    <exon start="90045" stop="90137"/>
                    <exon start="90431" stop="90652"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1323</number_coding_nucleotides>
                  <number_encoded_amino_acids>441</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IMTSELIYRGPESVPVTDGYTPKPHKPWFTVIRPLRYLLREQRIVFLFAGIAIASLIFAFLPSSRSSGGSSYANTGIYDSYLPSESTESQVAHRMIYHNRVGFGSINSGGKIPLGLKRKVLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPRFELIRHDVVEPLLLEVDQIYHLACPASPVHYKHNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLEHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAEVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGEFTMLELAKVVQETIDPNAQIVHKPNTEDDPHKRKPDISKAKELLGWEPKVALRNGLPMMVQDFRQRIFGDHKEESAKITTA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="95763" PGL_stop="91790"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="95763" e_stop="95683"/>
            <exon e_start="94950" e_stop="94926"/>
            <exon e_start="93846" e_stop="93769"/>
            <exon e_start="93509" e_stop="93405"/>
            <exon e_start="93210" e_stop="93090"/>
            <exon e_start="92242" e_stop="91790"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.950" acc_prob="1.000" e_score="0.988"/>
          <exon-intron don_prob="0.992" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.639" acc_prob="0.999" e_score="0.981"/>
          <exon-intron don_prob="0.952" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="0.954"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="95763" e_stop="95683" e_length="81"/>
          </exon>
          <intron i_serial="1" don_prob="0.950" acc_prob="1.000">
            <gDNA_intron_boundary i_start="95682" i_stop="94951" i_length="732"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="94950" e_stop="94926" e_length="25"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.984">
            <gDNA_intron_boundary i_start="94925" i_stop="93847" i_length="1079"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="93846" e_stop="93769" e_length="78"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.963">
            <gDNA_intron_boundary i_start="93768" i_stop="93510" i_length="259"/>
          </intron>
          <exon e_serial="4" e_score="0.981">
            <gDNA_exon_boundary e_start="93509" e_stop="93405" e_length="105"/>
          </exon>
          <intron i_serial="4" don_prob="0.639" acc_prob="0.999">
            <gDNA_intron_boundary i_start="93404" i_stop="93211" i_length="194"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="93210" e_stop="93090" e_length="121"/>
          </exon>
          <intron i_serial="5" don_prob="0.952" acc_prob="0.992">
            <gDNA_intron_boundary i_start="93089" i_stop="92243" i_length="847"/>
          </intron>
          <exon e_serial="6" e_score="0.954">
            <gDNA_exon_boundary e_start="92242" e_stop="91790" e_length="453"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95763" stop="95683"/>
              <exon start="94950" stop="94926"/>
              <exon start="93846" stop="93769"/>
              <exon start="93509" stop="93405"/>
              <exon start="93210" stop="93090"/>
              <exon start="92242" stop="91790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U316122" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTCTACCCTCTTTAAACCCTAGCTCCTTTGCCCACTTTTTTTTGTTGCTCTTCAATTTCTTCTGCTTGATCGAAGATGAG : TCGACCAATGGAAGAGGATGCCCCT : CAAGGGAAAAATGAGGAAGAGGAGTTCAATACTGGGCCACTTTCTGTCCTCATGATGAGTGTTAAGAATAACACACAG : GTGCTCATCAACTGTAGGAACAACAGGAAACTTTTTGGTCGTGTGAGAGCATTTGATTGTCACTGCAATATGGTGCTTGAAAATGTTAGAGAAATGTGGACTGAG : GTGCCCAAGACTGGAAAAGGAAAAAAGAAAGCTGTTGCTGTTAACAAAGATAGGTTTATCAGCAAGATGTTCCTTCGGGGAGATTCTGTGATCATTGTCCTCCGAAATCCTAAGTAGAGAG : GTGAATTGGATTTCTGTGCTTTGGAGCAAAACTTGTAAGCAGCTAGGATTTGGACCAGCTCTGTATAACCTTTCGTATTCGGGAATTTGGCTAGGCAGAACACCACCTTTGATTGCTGTAAGACTTGATATAAGATTTTGATGTTCTGGTATGCTATATACTGTTGTCTTCTTCACAAACTTATTGTAGACGTTGGAGTTTTAACGTTCTTGTTGTGTATGTTGAATCCTATGACCAGCTAATATGTACGGTAAATGTCTTGCATTAACTCCAGATACATTGTCCATTTGCGTGCGTGCTTGTCTATTTAACTATGTCTAGTTCTGGCACATGCATTGGTTGGACAAATGCAATATCGAGAGTTTGAAACTGAGAGGCACGGAGATATCAAGAGTAAATTATTACCCTTGGCTGTTATGCTGTGCATCACTAATTTAATTTTGGAAGAAGCGG</gDNA_template>
            <first_frame> P  L  P  S  L  N  P  S  S  F  A  H  F  F  L  L  L  F  N  F  F  C  L  I  E  D  E  :  S  T  N  G  R  G  C  P   : S  R  E  K  *  G  R  G  V  Q  Y  W  A  T  F  C  P  H  D  E  C  *  E  *  H  T   : G  A  H  Q  L  *  E  Q  Q  E  T  F  W  S  C  E  S  I  *  L  S  L  Q  Y  G  A  *  K  C  *  R  N  V  D  *   : G  A  Q  D  W  K  R  K  K  E  S  C  C  C  *  Q  R  *  V  Y  Q  Q  D  V  P  S  G  R  F  C  D  H  C  P  P  K  S  *  V  E  R :   *  I  G  F  L  C  F  G  A  K  L  V  S  S  *  D  L  D  Q  L  C  I  T  F  R  I  R  E  F  G  *  A  E  H  H  L  *  L  L  *  D  L  I  *  D  F  D  V  L  V  C  Y  I  L  L  S  S  S  Q  T  Y  C  R  R  W  S  F  N  V  L  V  V  Y  V  E  S  Y  D  Q  L  I  C  T  V  N  V  L  H  *  L  Q  I  H  C  P  F  A  C  V  L  V  Y  L  T  M  S  S  S  G  T  C  I  G  W  T  N  A  I  S  R  V  *  N  *  E  A  R  R  Y  Q  E  *  I  I  T  L  G  C  Y  A  V  H  H  *  F  N  F  G  R  S   </first_frame>
            <second_frame>  L  Y  P  L  *  T  L  A  P  L  P  T  F  F  C  C  S  S  I  S  S  A  *  S  K  M  S :   R  P  M  E  E  D  A  P  :  Q  G  K  N  E  E  E  E  F  N  T  G  P  L  S  V  L  M  M  S  V  K  N  N  T  Q  :  V  L  I  N  C  R  N  N  R  K  L  F  G  R  V  R  A  F  D  C  H  C  N  M  V  L  E  N  V  R  E  M  W  T  E  :  V  P  K  T  G  K  G  K  K  K  A  V  A  V  N  K  D  R  F  I  S  K  M  F  L  R  G  D  S  V  I  I  V  L  R  N  P  K  *  R   : G  E  L  D  F  C  A  L  E  Q  N  L  *  A  A  R  I  W  T  S  S  V  *  P  F  V  F  G  N  L  A  R  Q  N  T  T  F  D  C  C  K  T  *  Y  K  I  L  M  F  W  Y  A  I  Y  C  C  L  L  H  K  L  I  V  D  V  G  V  L  T  F  L  L  C  M  L  N  P  M  T  S  *  Y  V  R  *  M  S  C  I  N  S  R  Y  I  V  H  L  R  A  C  L  S  I  *  L  C  L  V  L  A  H  A  L  V  G  Q  M  Q  Y  R  E  F  E  T  E  R  H  G  D  I  K  S  K  L  L  P  L  A  V  M  L  C  I  T  N  L  I  L  E  E  A  </second_frame>
            <third_frame>   S  T  L  F  K  P  *  L  L  C  P  L  F  F  V  A  L  Q  F  L  L  L  D  R  R  *   : V  D  Q  W  K  R  M  P  L :   K  G  K  M  R  K  R  S  S  I  L  G  H  F  L  S  S  *  *  V  L  R  I  T  H  R :   C  S  S  T  V  G  T  T  G  N  F  L  V  V  *  E  H  L  I  V  T  A  I  W  C  L  K  M  L  E  K  C  G  L  R :   C  P  R  L  E  K  E  K  R  K  L  L  L  L  T  K  I  G  L  S  A  R  C  S  F  G  E  I  L  *  S  L  S  S  E  I  L  S  R  E  :  V  N  W  I  S  V  L  W  S  K  T  C  K  Q  L  G  F  G  P  A  L  Y  N  L  S  Y  S  G  I  W  L  G  R  T  P  P  L  I  A  V  R  L  D  I  R  F  *  C  S  G  M  L  Y  T  V  V  F  F  T  N  L  L  *  T  L  E  F  *  R  S  C  C  V  C  *  I  L  *  P  A  N  M  Y  G  K  C  L  A  L  T  P  D  T  L  S  I  C  V  R  A  C  L  F  N  Y  V  *  F  W  H  M  H  W  L  D  K  C  N  I  E  S  L  K  L  R  G  T  E  I  S  R  V  N  Y  Y  P  W  L  L  C  C  A  S  L  I  *  F  W  K  K  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0038L16.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95693" stop="95683"/>
                    <exon start="94950" stop="94926"/>
                    <exon start="93846" stop="93769"/>
                    <exon start="93509" stop="93405"/>
                    <exon start="93210" stop="93094"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>333</number_coding_nucleotides>
                  <number_encoded_amino_acids>111</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKMSRPMEEDAPQGKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLFGRVRAFDCHCNMVLENVREMWTEVPKTGKGKKKAVAVNKDRFISKMFLRGDSVIIVLRNPK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="99666" PGL_stop="98310"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="99666" e_stop="99538"/>
            <exon e_start="99413" e_stop="99315"/>
            <exon e_start="99217" e_stop="98310"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.974" acc_prob="0.947" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.938" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="99666" e_stop="99538" e_length="129"/>
          </exon>
          <intron i_serial="1" don_prob="0.974" acc_prob="0.947">
            <gDNA_intron_boundary i_start="99537" i_stop="99414" i_length="124"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="99413" e_stop="99315" e_length="99"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.938">
            <gDNA_intron_boundary i_start="99314" i_stop="99218" i_length="97"/>
          </intron>
          <exon e_serial="3" e_score="0.997">
            <gDNA_exon_boundary e_start="99217" e_stop="98310" e_length="908"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99666" stop="99538"/>
              <exon start="99413" stop="99315"/>
              <exon start="99217" stop="98310"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U323674" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGGTGAAGCCACATCCTGTGGTTATAAGCTTACTAACTAAAGTGGAGGATGTCATACCAAGATGGAAGATAGTCCCTACGAAGGATGTCATTGATTCGGCCTTCAAGGACCCCGCTAAAAGGGAAGAG : GTACGCGAGAACAAGTTAATTTATCAGGCAAAGCCAAGACTAAAGACAGCTTTGGAAATGCTAAGAACCAGCATGCACCTTGAGGAAAGTTTGCACGAG : GTCACTGTACCATTTTTAGTGTTACATGGGGAAGCAGACATAGTAACTGATCCAGAAATAAGTAAGGCTTTATACGAGCAAGCGAGTAGCAAAGACAAGACTATAAAACTCTATCCAGGAATGTGGCATGGTTTGACATATGGTGAGCCAGAAGAAAACATTGAAATCGTATTTTCAGATATCATCTCGTGGCTTGACAAGCGAAATGGAGAGAATACTGGTGATGCTAGTTTAATCGAGAGATCAGTTTGTCGAGCTACATCTACTCCTCCATATGAGATGCACACAGTTTCTTCACCTGCAACAATGAAAGAAACAAAACCACATAGAACGCGTCCCCAAGCTAATTATCTGTGTGGATTGAAAGGACGTCGAATGCATCATCATTCATCTATGTAGAAACTTGATCGATAGATATGGCGTGTTGCATCTCCTTCATTTGTTCATTCGCGTTACGGTGGCATAAATGTTACTACTATTATTTATCAAGGAAGTGGAAAATAACATGTTTTACACTATGAAGTTTTGTTGGACATATTTGATGATGAAGACGAGGGAAATACTTCAGGTTACTTTACACGGCCAATCCAACTCTTTTAAATTCTTACAAATATAAAATGAAGTTTGAGGTTGATAACCTAGCTTTATTCTTAAATTTAAGCATCCTCATTTGTTGTAGTAGTATCATCACAGAGTGTATTATAAACTCTACGATGGTCATGAATCATCTAGTTTTTTCTAGTTTTTATTTTTTTTATGCTTGTTAATTAGTAGAGGTTTGATGTCAGTAAGGTAAGGCTTAGCCCCCTTGCTTGTACTTTTCTCTTTATTAATAAAACTAGCCCTTGGCACACCTTACCTAGCGGAATTGCTTCAAAGAATAAAAAAAAGATTGTTTTCCAGATATT</gDNA_template>
            <first_frame> K  V  K  P  H  P  V  V  I  S  L  L  T  K  V  E  D  V  I  P  R  W  K  I  V  P  T  K  D  V  I  D  S  A  F  K  D  P  A  K  R  E  E  :  V  R  E  N  K  L  I  Y  Q  A  K  P  R  L  K  T  A  L  E  M  L  R  T  S  M  H  L  E  E  S  L  H  E  :  V  T  V  P  F  L  V  L  H  G  E  A  D  I  V  T  D  P  E  I  S  K  A  L  Y  E  Q  A  S  S  K  D  K  T  I  K  L  Y  P  G  M  W  H  G  L  T  Y  G  E  P  E  E  N  I  E  I  V  F  S  D  I  I  S  W  L  D  K  R  N  G  E  N  T  G  D  A  S  L  I  E  R  S  V  C  R  A  T  S  T  P  P  Y  E  M  H  T  V  S  S  P  A  T  M  K  E  T  K  P  H  R  T  R  P  Q  A  N  Y  L  C  G  L  K  G  R  R  M  H  H  H  S  S  M  *  K  L  D  R  *  I  W  R  V  A  S  P  S  F  V  H  S  R  Y  G  G  I  N  V  T  T  I  I  Y  Q  G  S  G  K  *  H  V  L  H  Y  E  V  L  L  D  I  F  D  D  E  D  E  G  N  T  S  G  Y  F  T  R  P  I  Q  L  F  *  I  L  T  N  I  K  *  S  L  R  L  I  T  *  L  Y  S  *  I  *  A  S  S  F  V  V  V  V  S  S  Q  S  V  L  *  T  L  R  W  S  *  I  I  *  F  F  L  V  F  I  F  F  M  L  V  N  *  *  R  F  D  V  S  K  V  R  L  S  P  L  A  C  T  F  L  F  I  N  K  T  S  P  W  H  T  L  P  S  G  I  A  S  K  N  K  K  K  I  V  F  Q  I   </first_frame>
            <second_frame>  R  *  S  H  I  L  W  L  *  A  Y  *  L  K  W  R  M  S  Y  Q  D  G  R  *  S  L  R  R  M  S  L  I  R  P  S  R  T  P  L  K  G  K  R :   Y  A  R  T  S  *  F  I  R  Q  S  Q  D  *  R  Q  L  W  K  C  *  E  P  A  C  T  L  R  K  V  C  T  R :   S  L  Y  H  F  *  C  Y  M  G  K  Q  T  *  *  L  I  Q  K  *  V  R  L  Y  T  S  K  R  V  A  K  T  R  L  *  N  S  I  Q  E  C  G  M  V  *  H  M  V  S  Q  K  K  T  L  K  S  Y  F  Q  I  S  S  R  G  L  T  S  E  M  E  R  I  L  V  M  L  V  *  S  R  D  Q  F  V  E  L  H  L  L  L  H  M  R  C  T  Q  F  L  H  L  Q  Q  *  K  K  Q  N  H  I  E  R  V  P  K  L  I  I  C  V  D  *  K  D  V  E  C  I  I  I  H  L  C  R  N  L  I  D  R  Y  G  V  L  H  L  L  H  L  F  I  R  V  T  V  A  *  M  L  L  L  L  F  I  K  E  V  E  N  N  M  F  Y  T  M  K  F  C  W  T  Y  L  M  M  K  T  R  E  I  L  Q  V  T  L  H  G  Q  S  N  S  F  K  F  L  Q  I  *  N  E  V  *  G  *  *  P  S  F  I  L  K  F  K  H  P  H  L  L  *  *  Y  H  H  R  V  Y  Y  K  L  Y  D  G  H  E  S  S  S  F  F  *  F  L  F  F  L  C  L  L  I  S  R  G  L  M  S  V  R  *  G  L  A  P  L  L  V  L  F  S  L  L  I  K  L  A  L  G  T  P  Y  L  A  E  L  L  Q  R  I  K  K  R  L  F  S  R  Y  </second_frame>
            <third_frame>   G  E  A  T  S  C  G  Y  K  L  T  N  *  S  G  G  C  H  T  K  M  E  D  S  P  Y  E  G  C  H  *  F  G  L  Q  G  P  R  *  K  G  R   : G  T  R  E  Q  V  N  L  S  G  K  A  K  T  K  D  S  F  G  N  A  K  N  Q  H  A  P  *  G  K  F  A  R   : G  H  C  T  I  F  S  V  T  W  G  S  R  H  S  N  *  S  R  N  K  *  G  F  I  R  A  S  E  *  Q  R  Q  D  Y  K  T  L  S  R  N  V  A  W  F  D  I  W  *  A  R  R  K  H  *  N  R  I  F  R  Y  H  L  V  A  *  Q  A  K  W  R  E  Y  W  *  C  *  F  N  R  E  I  S  L  S  S  Y  I  Y  S  S  I  *  D  A  H  S  F  F  T  C  N  N  E  R  N  K  T  T  *  N  A  S  P  S  *  L  S  V  W  I  E  R  T  S  N  A  S  S  F  I  Y  V  E  T  *  S  I  D  M  A  C  C  I  S  F  I  C  S  F  A  L  R  W  H  K  C  Y  Y  Y  Y  L  S  R  K  W  K  I  T  C  F  T  L  *  S  F  V  G  H  I  *  *  *  R  R  G  K  Y  F  R  L  L  Y  T  A  N  P  T  L  L  N  S  Y  K  Y  K  M  K  F  E  V  D  N  L  A  L  F  L  N  L  S  I  L  I  C  C  S  S  I  I  T  E  C  I  I  N  S  T  M  V  M  N  H  L  V  F  S  S  F  Y  F  F  Y  A  C  *  L  V  E  V  *  C  Q  *  G  K  A  *  P  P  C  L  Y  F  S  L  Y  *  *  N  *  P  L  A  H  L  T  *  R  N  C  F  K  E  *  K  K  D  C  F  P  D  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0038L16.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99666" stop="99538"/>
                    <exon start="99413" stop="99315"/>
                    <exon start="99217" stop="98819"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>624</number_coding_nucleotides>
                  <number_encoded_amino_acids>208</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KVKPHPVVISLLTKVEDVIPRWKIVPTKDVIDSAFKDPAKREEVRENKLIYQAKPRLKTALEMLRTSMHLEESLHEVTVPFLVLHGEADIVTDPEISKALYEQASSKDKTIKLYPGMWHGLTYGEPEENIEIVFSDIISWLDKRNGENTGDASLIERSVCRATSTPPYEMHTVSSPATMKETKPHRTRPQANYLCGLKGRRMHHHSSM*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0038L16.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98669" stop="98451"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRGKYFRLLYTANPTLLNSYKYKMKFEVDNLALFLNLSILICCSSIITECIINSTMVMNHLVFSSFYFFYAC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="103644" PGL_stop="99803"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="103644" e_stop="103088"/>
            <exon e_start="102965" e_stop="102875"/>
            <exon e_start="102796" e_stop="102764"/>
            <exon e_start="100340" e_stop="100194"/>
            <exon e_start="99933" e_stop="99803"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.489" acc_prob="0.818" e_score="1.000"/>
          <exon-intron don_prob="0.823" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.935" acc_prob="0.213" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="103644" e_stop="103088" e_length="557"/>
          </exon>
          <intron i_serial="1" don_prob="0.489" acc_prob="0.818">
            <gDNA_intron_boundary i_start="103087" i_stop="102966" i_length="122"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="102965" e_stop="102875" e_length="91"/>
          </exon>
          <intron i_serial="2" don_prob="0.823" acc_prob="0.999">
            <gDNA_intron_boundary i_start="102874" i_stop="102797" i_length="78"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="102796" e_stop="102764" e_length="33"/>
          </exon>
          <intron i_serial="3" don_prob="0.978" acc_prob="0.996">
            <gDNA_intron_boundary i_start="102763" i_stop="100341" i_length="2423"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="100340" e_stop="100194" e_length="147"/>
          </exon>
          <intron i_serial="4" don_prob="0.935" acc_prob="0.213">
            <gDNA_intron_boundary i_start="100193" i_stop="99934" i_length="260"/>
          </intron>
          <exon e_serial="5" e_score="0.992">
            <gDNA_exon_boundary e_start="99933" e_stop="99803" e_length="131"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103644" stop="103219"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344211" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103292" stop="103088"/>
              <exon start="102965" stop="102875"/>
              <exon start="102796" stop="102764"/>
              <exon start="100340" stop="100194"/>
              <exon start="99933" stop="99803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U329970" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCAACTACAAATCTATTTGAGTATTGAGTTATTTTTACTTCATTCTGAATTAGAGATTTCGAATTTGAGTCTTTTGAATATAAAGAGTTTTTGGATCCAAATCTTTTTGAAAATAAAATATTTCGAGTTTAAATCTTTGTGCGTATACAGTAATTTTTACTTTATTCTAAATTAGAAATTTTAAATTTAAATTTTTTAGTACAAAAAAAAATTAAATTGCAAATTTTAATTTAATCAAACTTCAATATAAATATAAGGTTAAAAATCCCCGAATACACTTCTCCTCATCATATCTTATATATTTATCTATTTATATCTTTCTGTATATATTCCAACTTCTCAGGTCCACTTTATCCCTCTCCCTGTTTTCCAAGAATTCAATATCTTACTATACTTTTATCGTATCAATAATCACTTTTTCTCTGTAAAAATAATTGCATCTATAAGGCCATAATACACAGATCTGTTACTTACCCATGAATGTTGAGTCACATTTCTGAGTTGGGATTTGGTTATTTTTTCTGAAAATATACAATGGGTGTTGAATATCATGAG : GTATTTATAAGGAATTCAAGAGGTGTACAACTCTTCACTTGTAGATGGTTGCCCTTTTCTTCTCCAAAAGCTCTTGTTTTCCTTTGCCATG : GTTATGGCATGGAATGCAGTAGATTCATGAGAG : GTGTTGGGACAAAGCTGGCAGATAATGGATATGCGGTGTTTGGAATAGATTATGAAGGTCATGGACGATCAGCGGGTGCGCGCTGTTACATCAAAAAGTTTGACAACATTGTCAATGACTGCAGCGAGTTTTTCAAGTCAGTTTGTG : CGCAGGAGGAGTATAGAGAGAAAAAACGGTTTCTGTATGGGGAGTCGATGGGAGGGGCCGTGGCTCTTTTAACACACAAGAAGGATCCTTCCTTTTGGCATGGTGCTCTTCTGGTTGCACCTATGTGTAAG</gDNA_template>
            <first_frame> F  Q  L  Q  I  Y  L  S  I  E  L  F  L  L  H  S  E  L  E  I  S  N  L  S  L  L  N  I  K  S  F  W  I  Q  I  F  L  K  I  K  Y  F  E  F  K  S  L  C  V  Y  S  N  F  Y  F  I  L  N  *  K  F  *  I  *  I  F  *  Y  K  K  K  L  N  C  K  F  *  F  N  Q  T  S  I  *  I  *  G  *  K  S  P  N  T  L  L  L  I  I  S  Y  I  F  I  Y  L  Y  L  S  V  Y  I  P  T  S  Q  V  H  F  I  P  L  P  V  F  Q  E  F  N  I  L  L  Y  F  Y  R  I  N  N  H  F  F  S  V  K  I  I  A  S  I  R  P  *  Y  T  D  L  L  L  T  H  E  C  *  V  T  F  L  S  W  D  L  V  I  F  S  E  N  I  Q  W  V  L  N  I  M  R :   Y  L  *  G  I  Q  E  V  Y  N  S  S  L  V  D  G  C  P  F  L  L  Q  K  L  L  F  S  F  A  M  :  V  M  A  W  N  A  V  D  S  *  E  :  V  L  G  Q  S  W  Q  I  M  D  M  R  C  L  E  *  I  M  K  V  M  D  D  Q  R  V  R  A  V  T  S  K  S  L  T  T  L  S  M  T  A  A  S  F  S  S  Q  F  V  :  R  R  R  S  I  E  R  K  N  G  F  C  M  G  S  R  W  E  G  P  W  L  F  *  H  T  R  R  I  L  P  F  G  M  V  L  F  W  L  H  L  C  V   </first_frame>
            <second_frame>  F  N  Y  K  S  I  *  V  L  S  Y  F  Y  F  I  L  N  *  R  F  R  I  *  V  F  *  I  *  R  V  F  G  S  K  S  F  *  K  *  N  I  S  S  L  N  L  C  A  Y  T  V  I  F  T  L  F  *  I  R  N  F  K  F  K  F  F  S  T  K  K  N  *  I  A  N  F  N  L  I  K  L  Q  Y  K  Y  K  V  K  N  P  R  I  H  F  S  S  S  Y  L  I  Y  L  S  I  Y  I  F  L  Y  I  F  Q  L  L  R  S  T  L  S  L  S  L  F  S  K  N  S  I  S  Y  Y  T  F  I  V  S  I  I  T  F  S  L  *  K  *  L  H  L  *  G  H  N  T  Q  I  C  Y  L  P  M  N  V  E  S  H  F  *  V  G  I  W  L  F  F  L  K  I  Y  N  G  C  *  I  S  *   : G  I  Y  K  E  F  K  R  C  T  T  L  H  L  *  M  V  A  L  F  F  S  K  S  S  C  F  P  L  P  W :   L  W  H  G  M  Q  *  I  H  E  R :   C  W  D  K  A  G  R  *  W  I  C  G  V  W  N  R  L  *  R  S  W  T  I  S  G  C  A  L  L  H  Q  K  V  *  Q  H  C  Q  *  L  Q  R  V  F  Q  V  S  L  C :   A  G  G  V  *  R  E  K  T  V  S  V  W  G  V  D  G  R  G  R  G  S  F  N  T  Q  E  G  S  F  L  L  A  W  C  S  S  G  C  T  Y  V  *  </second_frame>
            <third_frame>   S  T  T  N  L  F  E  Y  *  V  I  F  T  S  F  *  I  R  D  F  E  F  E  S  F  E  Y  K  E  F  L  D  P  N  L  F  E  N  K  I  F  R  V  *  I  F  V  R  I  Q  *  F  L  L  Y  S  K  L  E  I  L  N  L  N  F  L  V  Q  K  K  I  K  L  Q  I  L  I  *  S  N  F  N  I  N  I  R  L  K  I  P  E  Y  T  S  P  H  H  I  L  Y  I  Y  L  F  I  S  F  C  I  Y  S  N  F  S  G  P  L  Y  P  S  P  C  F  P  R  I  Q  Y  L  T  I  L  L  S  Y  Q  *  S  L  F  L  C  K  N  N  C  I  Y  K  A  I  I  H  R  S  V  T  Y  P  *  M  L  S  H  I  S  E  L  G  F  G  Y  F  F  *  K  Y  T  M  G  V  E  Y  H  E  :  V  F  I  R  N  S  R  G  V  Q  L  F  T  C  R  W  L  P  F  S  S  P  K  A  L  V  F  L  C  H   : G  Y  G  M  E  C  S  R  F  M  R   : G  V  G  T  K  L  A  D  N  G  Y  A  V  F  G  I  D  Y  E  G  H  G  R  S  A  G  A  R  C  Y  I  K  K  F  D  N  I  V  N  D  C  S  E  F  F  K  S  V  C   : A  Q  E  E  Y  R  E  K  K  R  F  L  Y  G  E  S  M  G  G  A  V  A  L  L  T  H  K  K  D  P  S  F  W  H  G  A  L  L  V  A  P  M  C  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0038L16.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103117" stop="103088"/>
                    <exon start="102965" stop="102875"/>
                    <exon start="102796" stop="102764"/>
                    <exon start="100340" stop="100194"/>
                    <exon start="99933" stop="99803"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>432</number_coding_nucleotides>
                  <number_encoded_amino_acids>144</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KYTMGVEYHEVFIRNSRGVQLFTCRWLPFSSPKALVFLCHGYGMECSRFMRGVGTKLADNGYAVFGIDYEGHGRSAGARCYIKKFDNIVNDCSEFFKSVCAQEEYREKKRFLYGESMGGAVALLTHKKDPSFWHGALLVAPMCK</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0038L16.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103427" stop="103215"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IANFNLIKLQYKYKVKNPRIHFSSSYLIYLSIYIFLYIFQLLRSTLSLSLFSKNSISYYTFIVSIITFSL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="101876" e_stop="101310"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="101876" e_stop="101310" e_length="567"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101876" stop="101310"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U332873" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCCAACTGGCTTGCTTGAGATTGAAGTGGAGTTTCATGTTAGCTATCTTGGCAGTATGTGCATTATGTTTATCTGGTTGTGGGATATTATTATACAAGAATATCTTTTTTATAGGGCACAATTATTGGTGATATATAATAATGCAATTGTTAGGAGCTAGTAGTTAAAAATGCAACGAAAAATGGTTCTCAAATTGAATGCCAGACTGAAAACTCACCTAACATACTGATCCTCTCATACTGAAGGTACTATAGATTTGCTGAAACAAAGTAATTTTTACCCTTGAATAACATCCTTATATGGTTTACAGCTGCATGATTAGTCTGTTTCTTGTCCTTTTTTGGTTAATTTGCTAATTAACAGCTATGTTGGAACTTCATTGTTTGCCTACTAAAATAAGGAGGATTAATGGTTTGCTGGTAGGTTGGTTGACTATTGAGAAACATAATAAAATTAAAAGTCCTATCTTGGTAGTTTGATAGATTAATTAGGTTAGCAAATTAGTTGGGCCCTATAAGTAACCTCAATTAAAGATTGCTTCACACACCAAAATTTGTGGGACACTTT</gDNA_template>
            <first_frame> A  N  W  L  A  *  D  *  S  G  V  S  C  *  L  S  W  Q  Y  V  H  Y  V  Y  L  V  V  G  Y  Y  Y  T  R  I  S  F  L  *  G  T  I  I  G  D  I  *  *  C  N  C  *  E  L  V  V  K  N  A  T  K  N  G  S  Q  I  E  C  Q  T  E  N  S  P  N  I  L  I  L  S  Y  *  R  Y  Y  R  F  A  E  T  K  *  F  L  P  L  N  N  I  L  I  W  F  T  A  A  *  L  V  C  F  L  S  F  F  G  *  F  A  N  *  Q  L  C  W  N  F  I  V  C  L  L  K  *  G  G  L  M  V  C  W  *  V  G  *  L  L  R  N  I  I  K  L  K  V  L  S  W  *  F  D  R  L  I  R  L  A  N  *  L  G  P  I  S  N  L  N  *  R  L  L  H  T  P  K  F  V  G  H  F </first_frame>
            <second_frame>  P  T  G  L  L  E  I  E  V  E  F  H  V  S  Y  L  G  S  M  C  I  M  F  I  W  L  W  D  I  I  I  Q  E  Y  L  F  Y  R  A  Q  L  L  V  I  Y  N  N  A  I  V  R  S  *  *  L  K  M  Q  R  K  M  V  L  K  L  N  A  R  L  K  T  H  L  T  Y  *  S  S  H  T  E  G  T  I  D  L  L  K  Q  S  N  F  Y  P  *  I  T  S  L  Y  G  L  Q  L  H  D  *  S  V  S  C  P  F  L  V  N  L  L  I  N  S  Y  V  G  T  S  L  F  A  Y  *  N  K  E  D  *  W  F  A  G  R  L  V  D  Y  *  E  T  *  *  N  *  K  S  Y  L  G  S  L  I  D  *  L  G  *  Q  I  S  W  A  L  *  V  T  S  I  K  D  C  F  T  H  Q  N  L  W  D  T   </second_frame>
            <third_frame>   Q  L  A  C  L  R  L  K  W  S  F  M  L  A  I  L  A  V  C  A  L  C  L  S  G  C  G  I  L  L  Y  K  N  I  F  F  I  G  H  N  Y  W  *  Y  I  I  M  Q  L  L  G  A  S  S  *  K  C  N  E  K  W  F  S  N  *  M  P  D  *  K  L  T  *  H  T  D  P  L  I  L  K  V  L  *  I  C  *  N  K  V  I  F  T  L  E  *  H  P  Y  M  V  Y  S  C  M  I  S  L  F  L  V  L  F  W  L  I  C  *  L  T  A  M  L  E  L  H  C  L  P  T  K  I  R  R  I  N  G  L  L  V  G  W  L  T  I  E  K  H  N  K  I  K  S  P  I  L  V  V  *  *  I  N  *  V  S  K  L  V  G  P  Y  K  *  P  Q  L  K  I  A  S  H  T  K  I  C  G  T  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0038L16.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="107976" PGL_stop="110940"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="107976" e_stop="108079"/>
            <exon e_start="108160" e_stop="108428"/>
            <exon e_start="110462" e_stop="110940"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.876" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="0.996"/>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="107976" e_stop="108079" e_length="104"/>
          </exon>
          <intron i_serial="1" don_prob="0.876" acc_prob="0.992">
            <gDNA_intron_boundary i_start="108080" i_stop="108159" i_length="80"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="108160" e_stop="108428" e_length="269"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="108429" i_stop="110461" i_length="2033"/>
          </intron>
          <exon e_serial="3" e_score="0.979">
            <gDNA_exon_boundary e_start="110462" e_stop="110940" e_length="479"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107976" stop="108079"/>
              <exon start="108160" stop="108428"/>
              <exon start="110462" stop="110940"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U316124" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGTCGGGGCGACGGGTCAAATAGGAAGAGGAACGAGGAAAACCCTAATTAAATATAATCATCCACTTCCATACACTCGCAGTCGGCCGCCGTCGAATTTCTCCC : TATTTGAATAGCAGCAGAAGAGAAATCAAGAGCGTAAAGATGAGCCGAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATCGACTGTTCGAAGCCAGTGGAGGACAGTATTATGGAGATTGCTTCTCTTGACAAGTTCCTCCAAGAGAGAATTAAGGTTGGTGGAAAAGCTGGTGCACTTGGAGATTCCGTTACTGTCACTCGTGATAAGAATAAAATCACCGTCACTTGCAACTCCACTTTTTCCAAGAG : GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAACAACGTTAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTATGAGTTGCGCTACTTCAACATTGCCGAGAATGAAGCAGATGAAGAAGATTAAACATGTCTAGTCAATGTCCCTTTTATCTTCTTATTTTGAACCTTATATCATCTGTTTGAGTTATTAATGAGCCGTATCTTCTCATTTCCAGATTATTGATTTTTTGTCCCCTTATCAGTAAAAGAAAACGTTACTTTGATACACTTTGGTTTGTTCATCTCTGGGGTCAAGTTTTTGCAAGGCATCAATTTCTCTGTATTGCCTTTTCCCTCTTGATGATCACATGTAATTTATAGAGTTTATCTTTTGTTGTTCTTGTGTCTTTCTTTTAACCACTGCGCCATTGATGATTTCCTTCAATCCTTGAAAAGATCGATTGAGACTACCTTCATTG</gDNA_template>
            <first_frame> G  R  G  D  G  S  N  R  K  R  N  E  E  N  P  N  *  I  *  S  S  T  S  I  H  S  Q  S  A  A  V  E  F  L  P :   I  *  I  A  A  E  E  K  S  R  A  *  R  *  A  E  Q  Q  Q  Q  *  R  A  G  R  R  R  G  Q  A  S  S  S  T  V  R  S  Q  W  R  T  V  L  W  R  L  L  L  L  T  S  S  S  K  R  E  L  R  L  V  E  K  L  V  H  L  E  I  P  L  L  S  L  V  I  R  I  K  S  P  S  L  A  T  P  L  F  P  R   : G  T  S  N  T  L  S  K  S  T  *  R  K  T  T  L  G  I  G  L  G  *  L  L  P  T  R  T  G  M  F  M  S  C  A  T  S  T  L  P  R  M  K  Q  M  K  K  I  K  H  V  *  S  M  S  L  L  S  S  Y  F  E  P  Y  I  I  C  L  S  Y  *  *  A  V  S  S  H  F  Q  I  I  D  F  L  S  P  Y  Q  *  K  K  T  L  L  *  Y  T  L  V  C  S  S  L  G  S  S  F  C  K  A  S  I  S  L  Y  C  L  F  P  L  D  D  H  M  *  F  I  E  F  I  F  C  C  S  C  V  F  L  L  T  T  A  P  L  M  I  S  F  N  P  *  K  D  R  L  R  L  P  S  L </first_frame>
            <second_frame>  V  G  A  T  G  Q  I  G  R  G  T  R  K  T  L  I  K  Y  N  H  P  L  P  Y  T  R  S  R  P  P  S  N  F  S   : L  F  E  *  Q  Q  K  R  N  Q  E  R  K  D  E  P  S  S  S  S  S  E  G  R  E  E  E  G  G  K  L  R  H  R  L  F  E  A  S  G  G  Q  Y  Y  G  D  C  F  S  *  Q  V  P  P  R  E  N  *  G  W  W  K  S  W  C  T  W  R  F  R  Y  C  H  S  *  *  E  *  N  H  R  H  L  Q  L  H  F  F  Q  E  :  V  P  Q  I  P  C  Q  K  V  L  E  E  K  Q  R  *  G  L  A  *  G  D  C  F  Q  Q  G  Q  E  C  L  *  V  A  L  L  Q  H  C  R  E  *  S  R  *  R  R  L  N  M  S  S  Q  C  P  F  Y  L  L  I  L  N  L  I  S  S  V  *  V  I  N  E  P  Y  L  L  I  S  R  L  L  I  F  C  P  L  I  S  K  R  K  R  Y  F  D  T  L  W  F  V  H  L  W  G  Q  V  F  A  R  H  Q  F  L  C  I  A  F  S  L  L  M  I  T  C  N  L  *  S  L  S  F  V  V  L  V  S  F  F  *  P  L  R  H  *  *  F  P  S  I  L  E  K  I  D  *  D  Y  L  H   </second_frame>
            <third_frame>   S  G  R  R  V  K  *  E  E  E  R  G  K  P  *  L  N  I  I  I  H  F  H  T  L  A  V  G  R  R  R  I  S  P  :  Y  L  N  S  S  R  R  E  I  K  S  V  K  M  S  R  A  A  A  A  V  K  G  G  K  K  K  G  A  S  F  V  I  D  C  S  K  P  V  E  D  S  I  M  E  I  A  S  L  D  K  F  L  Q  E  R  I  K  V  G  G  K  A  G  A  L  G  D  S  V  T  V  T  R  D  K  N  K  I  T  V  T  C  N  S  T  F  S  K  R :   Y  L  K  Y  L  V  K  K  Y  L  K  K  N  N  V  R  D  W  L  R  V  I  A  S  N  K  D  R  N  V  Y  E  L  R  Y  F  N  I  A  E  N  E  A  D  E  E  D  *  T  C  L  V  N  V  P  F  I  F  L  F  *  T  L  Y  H  L  F  E  L  L  M  S  R  I  F  S  F  P  D  Y  *  F  F  V  P  L  S  V  K  E  N  V  T  L  I  H  F  G  L  F  I  S  G  V  K  F  L  Q  G  I  N  F  S  V  L  P  F  P  S  *  *  S  H  V  I  Y  R  V  Y  L  L  L  F  L  C  L  S  F  N  H  C  A  I  D  D  F  L  Q  S  L  K  R  S  I  E  T  T  F  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0038L16.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108023" stop="108079"/>
                    <exon start="108160" stop="108428"/>
                    <exon start="110462" stop="110606"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>468</number_coding_nucleotides>
                  <number_encoded_amino_acids>156</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LNIIIHFHTLAVGRRRISPYLNSSRREIKSVKMSRAAAAVKGGKKKGASFVIDCSKPVEDSIMEIASLDKFLQERIKVGGKAGALGDSVTVTRDKNKITVTCNSTFSKRYLKYLVKKYLKKNNVRDWLRVIASNKDRNVYELRYFNIAENEADEED*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="109651" e_stop="110304"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="109651" e_stop="110304" e_length="654"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109651" stop="110304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U340805" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGCATTAGCTAGATTGTTTGGCTCCTCCCACTTCTCAGTGAAGTAGATTCTTAAGTAGGCGGTTGTTGATGAGACCAATTAGACTGCAACCTAGCCTTTCACTTGTGTCCATTAGTTTGCGTCAAGTGCAATTTTGTTGATTTCATCTTTTACATCCATAATCACACAGAATAGTACACTTGGATTATGTCAAATTACATGTGAAATAGGCTTGGAAGAACTAATATGTATTAAGTTTGTAACTTGAAAGAGATAGGTAACTAACATGTAAGCAGGCTTAGTTATAGGTAATTGATAATATTGATCATTATAGATGCTCTTGCTAACTGAAACATCCTTCAGGGCGTGTAAAGCATATTTTCATGTATTTTTTGTTGGGTTCTGAAGAAAGTCTTCATTTTTTATGTAAGTTTGATGCAGCTGAGTAGAATCTATAGTGGTATTCTTGTTTCATCTGATGTATGTTTCTAAGCTTGTTCTGGAAGTGACATCAACCACTTATTAGCATCACCATTTACCTAGCACATTTTTGGTTCAAGTGATAGTCCAAAGGCTACTTGTAAAAGAAACTGATACTCTAAAGAGAACCAAATGTCCAACATATTTATCATATTACTTTTTTTTTTTTGCAATTTCTGTATGCGCGATTAATG</gDNA_template>
            <first_frame> E  H  *  L  D  C  L  A  P  P  T  S  Q  *  S  R  F  L  S  R  R  L  L  M  R  P  I  R  L  Q  P  S  L  S  L  V  S  I  S  L  R  Q  V  Q  F  C  *  F  H  L  L  H  P  *  S  H  R  I  V  H  L  D  Y  V  K  L  H  V  K  *  A  W  K  N  *  Y  V  L  S  L  *  L  E  R  D  R  *  L  T  C  K  Q  A  *  L  *  V  I  D  N  I  D  H  Y  R  C  S  C  *  L  K  H  P  S  G  R  V  K  H  I  F  M  Y  F  L  L  G  S  E  E  S  L  H  F  L  C  K  F  D  A  A  E  *  N  L  *  W  Y  S  C  F  I  *  C  M  F  L  S  L  F  W  K  *  H  Q  P  L  I  S  I  T  I  Y  L  A  H  F  W  F  K  *  *  S  K  G  Y  L  *  K  K  L  I  L  *  R  E  P  N  V  Q  H  I  Y  H  I  T  F  F  F  L  Q  F  L  Y  A  R  L  M </first_frame>
            <second_frame>  S  I  S  *  I  V  W  L  L  P  L  L  S  E  V  D  S  *  V  G  G  C  *  *  D  Q  L  D  C  N  L  A  F  H  L  C  P  L  V  C  V  K  C  N  F  V  D  F  I  F  Y  I  H  N  H  T  E  *  Y  T  W  I  M  S  N  Y  M  *  N  R  L  G  R  T  N  M  Y  *  V  C  N  L  K  E  I  G  N  *  H  V  S  R  L  S  Y  R  *  L  I  I  L  I  I  I  D  A  L  A  N  *  N  I  L  Q  G  V  *  S  I  F  S  C  I  F  C  W  V  L  K  K  V  F  I  F  Y  V  S  L  M  Q  L  S  R  I  Y  S  G  I  L  V  S  S  D  V  C  F  *  A  C  S  G  S  D  I  N  H  L  L  A  S  P  F  T  *  H  I  F  G  S  S  D  S  P  K  A  T  C  K  R  N  *  Y  S  K  E  N  Q  M  S  N  I  F  I  I  L  L  F  F  F  C  N  F  C  M  R  D  *   </second_frame>
            <third_frame>   A  L  A  R  L  F  G  S  S  H  F  S  V  K  *  I  L  K  *  A  V  V  D  E  T  N  *  T  A  T  *  P  F  T  C  V  H  *  F  A  S  S  A  I  L  L  I  S  S  F  T  S  I  I  T  Q  N  S  T  L  G  L  C  Q  I  T  C  E  I  G  L  E  E  L  I  C  I  K  F  V  T  *  K  R  *  V  T  N  M  *  A  G  L  V  I  G  N  *  *  Y  *  S  L  *  M  L  L  L  T  E  T  S  F  R  A  C  K  A  Y  F  H  V  F  F  V  G  F  *  R  K  S  S  F  F  M  *  V  *  C  S  *  V  E  S  I  V  V  F  L  F  H  L  M  Y  V  S  K  L  V  L  E  V  T  S  T  T  Y  *  H  H  H  L  P  S  T  F  L  V  Q  V  I  V  Q  R  L  L  V  K  E  T  D  T  L  K  R  T  K  C  P  T  Y  L  S  Y  Y  F  F  F  F  A  I  S  V  C  A  I  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0038L16.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="111556" PGL_stop="114871"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="111556" e_stop="111615"/>
            <exon e_start="111704" e_stop="111963"/>
            <exon e_start="114457" e_stop="114811"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.917" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="111556" e_stop="111615" e_length="60"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.917">
            <gDNA_intron_boundary i_start="111616" i_stop="111703" i_length="88"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="111704" e_stop="111963" e_length="260"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="111964" i_stop="114456" i_length="2493"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="114457" e_stop="114811" e_length="355"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111556" stop="111615"/>
              <exon start="111704" stop="111963"/>
              <exon start="114457" stop="114811"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U316125" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTAACAGAGTCACCACTTCCATACACTCACACTAGGCCGTGGACGTCGAGTTTCATCCT : CAGAAGAGAAATACAGAGAGTGTAAAGATGAGCCGAGCAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATTGACTGTTCGAAGCCGGTAGAAGACAGTATCATGGAGATTGCTTCTCTTGACAAGTTCCTTCAAGAGAGGATTAAGGTTGGTGGAAAAGCTGGTGCTCTTGGGGATTCCGTTACTGTTACTCGTGACAAGAACAAGATCACCGTCACCTGCAACTCAACTTTTTCCAAGAG : GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAATAACGTCAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTACGAATTGCGCTACTTCAACATTGCTGAGAATGAAGCAGATGAAGAAGATTAAACATGACCATTCAATGTCTCTCTTTATCTTCTTTCTTTAGTCGGCCTTCACTTTTTGATCCTTGTATCATCACTAATGAATCCTGTCTTCTCATTTCTAGATTTTGTTTTTGCAGTTTGCTTATCAGTAAAAGAAAACATTACATCGATACTTTGGTTTGTCTATCTTTGGGGATAATTATGAAAATGTCAATTTATCTGTATTGCCTTT</gDNA_template>
            <first_frame> F  N  R  V  T  T  S  I  H  S  H  *  A  V  D  V  E  F  H  P  :  Q  K  R  N  T  E  S  V  K  M  S  R  A  A  A  A  A  V  K  G  G  K  K  K  G  A  S  F  V  I  D  C  S  K  P  V  E  D  S  I  M  E  I  A  S  L  D  K  F  L  Q  E  R  I  K  V  G  G  K  A  G  A  L  G  D  S  V  T  V  T  R  D  K  N  K  I  T  V  T  C  N  S  T  F  S  K  R :   Y  L  K  Y  L  V  K  K  Y  L  K  K  N  N  V  R  D  W  L  R  V  I  A  S  N  K  D  R  N  V  Y  E  L  R  Y  F  N  I  A  E  N  E  A  D  E  E  D  *  T  *  P  F  N  V  S  L  Y  L  L  S  L  V  G  L  H  F  L  I  L  V  S  S  L  M  N  P  V  F  S  F  L  D  F  V  F  A  V  C  L  S  V  K  E  N  I  T  S  I  L  W  F  V  Y  L  W  G  *  L  *  K  C  Q  F  I  C  I  A  F </first_frame>
            <second_frame>  L  T  E  S  P  L  P  Y  T  H  T  R  P  W  T  S  S  F  I  L :   R  R  E  I  Q  R  V  *  R  *  A  E  Q  Q  Q  Q  Q  *  R  A  G  R  R  R  G  Q  A  S  S  L  T  V  R  S  R  *  K  T  V  S  W  R  L  L  L  L  T  S  S  F  K  R  G  L  R  L  V  E  K  L  V  L  L  G  I  P  L  L  L  L  V  T  R  T  R  S  P  S  P  A  T  Q  L  F  P  R   : G  T  S  N  T  L  S  K  S  T  *  R  K  I  T  S  G  I  G  L  G  *  L  L  P  T  R  T  G  M  F  T  N  C  A  T  S  T  L  L  R  M  K  Q  M  K  K  I  K  H  D  H  S  M  S  L  F  I  F  F  L  *  S  A  F  T  F  *  S  L  Y  H  H  *  *  I  L  S  S  H  F  *  I  L  F  L  Q  F  A  Y  Q  *  K  K  T  L  H  R  Y  F  G  L  S  I  F  G  D  N  Y  E  N  V  N  L  S  V  L  P   </second_frame>
            <third_frame>   *  Q  S  H  H  F  H  T  L  T  L  G  R  G  R  R  V  S  S   : S  E  E  K  Y  R  E  C  K  D  E  P  S  S  S  S  S  S  E  G  R  E  E  E  G  G  K  L  R  H  *  L  F  E  A  G  R  R  Q  Y  H  G  D  C  F  S  *  Q  V  P  S  R  E  D  *  G  W  W  K  S  W  C  S  W  G  F  R  Y  C  Y  S  *  Q  E  Q  D  H  R  H  L  Q  L  N  F  F  Q  E  :  V  P  Q  I  P  C  Q  K  V  L  E  E  K  *  R  Q  G  L  A  *  G  D  C  F  Q  Q  G  Q  E  C  L  R  I  A  L  L  Q  H  C  *  E  *  S  R  *  R  R  L  N  M  T  I  Q  C  L  S  L  S  S  F  F  S  R  P  S  L  F  D  P  C  I  I  T  N  E  S  C  L  L  I  S  R  F  C  F  C  S  L  L  I  S  K  R  K  H  Y  I  D  T  L  V  C  L  S  L  G  I  I  M  K  M  S  I  Y  L  Y  C  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0038L16.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111592" stop="111615"/>
                    <exon start="111704" stop="111963"/>
                    <exon start="114457" stop="114601"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>426</number_coding_nucleotides>
                  <number_encoded_amino_acids>142</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AVDVEFHPQKRNTESVKMSRAAAAAVKGGKKKGASFVIDCSKPVEDSIMEIASLDKFLQERIKVGGKAGALGDSVTVTRDKNKITVTCNSTFSKRYLKYLVKKYLKKNNVRDWLRVIASNKDRNVYELRYFNIAENEADEED*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0038L16.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="114592" stop="114810"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRLNMTIQCLSLSSFFSRPSLFDPCIITNESCLLISRFCFCSLLISKRKHYIDTLVCLSLGIIMKMSIYLYCL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="111600" e_stop="111615"/>
            <exon e_start="111707" e_stop="111963"/>
            <exon e_start="114457" e_stop="114871"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.808" e_score="0.875"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="0.981"/>
          <exon-only e_score="0.945"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.875">
            <gDNA_exon_boundary e_start="111600" e_stop="111615" e_length="16"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.808">
            <gDNA_intron_boundary i_start="111616" i_stop="111706" i_length="91"/>
          </intron>
          <exon e_serial="2" e_score="0.981">
            <gDNA_exon_boundary e_start="111707" e_stop="111963" e_length="257"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="111964" i_stop="114456" i_length="2493"/>
          </intron>
          <exon e_serial="3" e_score="0.945">
            <gDNA_exon_boundary e_start="114457" e_stop="114871" e_length="415"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111600" stop="111615"/>
              <exon start="111707" stop="111963"/>
              <exon start="114457" stop="114871"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335499" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGTCGAGTTTCATCCT : AAGAGAAATACAGAGAGTGTAAAGATGAGCCGAGCAGCAGCAGCAGCAGTGAAGGGCGGGAAGAAGAAGGGGGCAAGCTTCGTCATTGACTGTTCGAAGCCGGTAGAAGACAGTATCATGGAGATTGCTTCTCTTGACAAGTTCCTTCAAGAGAGGATTAAGGTTGGTGGAAAAGCTGGTGCTCTTGGGGATTCCGTTACTGTTACTCGTGACAAGAACAAGATCACCGTCACCTGCAACTCAACTTTTTCCAAGAG : GTACCTCAAATACCTTGTCAAAAAGTACTTGAAGAAAAATAACGTCAGGGATTGGCTTAGGGTGATTGCTTCCAACAAGGACAGGAATGTTTACGAATTGCGCTACTTCAACATTGCTGAGAATGAAGCAGATGAAGAAGATTAAACATGACCATTCAATGTCTCTCTTTATCTTCTTTCTTTAGTCGGCCTTCACTTTTTGATCCTTGTATCATCACTAATGAATCCTGTCTTCTCATTTCTAGATTTTGTTTTTGCAGTTTGCTTATCAGTAAAAGAAAACATTACATCGATACTTTGGTTTGTCTATCTTTGGGGATAATTATGAAAATGTCAATTTATCTGTATTGCCTTTCTCCTCTGGATGATCTCAAGACATATATAAGATTAAAATAGATATAATATCTCATAATTA</gDNA_template>
            <first_frame> R  R  V  S  S   : *  E  K  Y  R  E  C  K  D  E  P  S  S  S  S  S  S  E  G  R  E  E  E  G  G  K  L  R  H  *  L  F  E  A  G  R  R  Q  Y  H  G  D  C  F  S  *  Q  V  P  S  R  E  D  *  G  W  W  K  S  W  C  S  W  G  F  R  Y  C  Y  S  *  Q  E  Q  D  H  R  H  L  Q  L  N  F  F  Q  E  :  V  P  Q  I  P  C  Q  K  V  L  E  E  K  *  R  Q  G  L  A  *  G  D  C  F  Q  Q  G  Q  E  C  L  R  I  A  L  L  Q  H  C  *  E  *  S  R  *  R  R  L  N  M  T  I  Q  C  L  S  L  S  S  F  F  S  R  P  S  L  F  D  P  C  I  I  T  N  E  S  C  L  L  I  S  R  F  C  F  C  S  L  L  I  S  K  R  K  H  Y  I  D  T  L  V  C  L  S  L  G  I  I  M  K  M  S  I  Y  L  Y  C  L  S  P  L  D  D  L  K  T  Y  I  R  L  K  *  I  *  Y  L  I  I  </first_frame>
            <second_frame>  V  E  F  H  P  :  K  R  N  T  E  S  V  K  M  S  R  A  A  A  A  A  V  K  G  G  K  K  K  G  A  S  F  V  I  D  C  S  K  P  V  E  D  S  I  M  E  I  A  S  L  D  K  F  L  Q  E  R  I  K  V  G  G  K  A  G  A  L  G  D  S  V  T  V  T  R  D  K  N  K  I  T  V  T  C  N  S  T  F  S  K  R :   Y  L  K  Y  L  V  K  K  Y  L  K  K  N  N  V  R  D  W  L  R  V  I  A  S  N  K  D  R  N  V  Y  E  L  R  Y  F  N  I  A  E  N  E  A  D  E  E  D  *  T  *  P  F  N  V  S  L  Y  L  L  S  L  V  G  L  H  F  L  I  L  V  S  S  L  M  N  P  V  F  S  F  L  D  F  V  F  A  V  C  L  S  V  K  E  N  I  T  S  I  L  W  F  V  Y  L  W  G  *  L  *  K  C  Q  F  I  C  I  A  F  L  L  W  M  I  S  R  H  I  *  D  *  N  R  Y  N  I  S  *  L </second_frame>
            <third_frame>   S  S  F  I  L :   R  E  I  Q  R  V  *  R  *  A  E  Q  Q  Q  Q  Q  *  R  A  G  R  R  R  G  Q  A  S  S  L  T  V  R  S  R  *  K  T  V  S  W  R  L  L  L  L  T  S  S  F  K  R  G  L  R  L  V  E  K  L  V  L  L  G  I  P  L  L  L  L  V  T  R  T  R  S  P  S  P  A  T  Q  L  F  P  R   : G  T  S  N  T  L  S  K  S  T  *  R  K  I  T  S  G  I  G  L  G  *  L  L  P  T  R  T  G  M  F  T  N  C  A  T  S  T  L  L  R  M  K  Q  M  K  K  I  K  H  D  H  S  M  S  L  F  I  F  F  L  *  S  A  F  T  F  *  S  L  Y  H  H  *  *  I  L  S  S  H  F  *  I  L  F  L  Q  F  A  Y  Q  *  K  K  T  L  H  R  Y  F  G  L  S  I  F  G  D  N  Y  E  N  V  N  L  S  V  L  P  F  S  S  G  *  S  Q  D  I  Y  K  I  K  I  D  I  I  S  H  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0038L16.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111601" stop="111615"/>
                    <exon start="111707" stop="111963"/>
                    <exon start="114457" stop="114601"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>414</number_coding_nucleotides>
                  <number_encoded_amino_acids>138</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VEFHPKRNTESVKMSRAAAAAVKGGKKKGASFVIDCSKPVEDSIMEIASLDKFLQERIKVGGKAGALGDSVTVTRDKNKITVTCNSTFSKRYLKYLVKKYLKKNNVRDWLRVIASNKDRNVYELRYFNIAENEADEED*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0038L16.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="114592" stop="114852"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRLNMTIQCLSLSSFFSRPSLFDPCIITNESCLLISRFCFCSLLISKRKHYIDTLVCLSLGIIMKMSIYLYCLSPLDDLKTYIRLK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="120422" PGL_stop="116851"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="120422" e_stop="119153"/>
            <exon e_start="117853" e_stop="117624"/>
            <exon e_start="117531" e_stop="117439"/>
            <exon e_start="117296" e_stop="116851"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.941" acc_prob="0.998" e_score="0.996"/>
          <exon-intron don_prob="0.881" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.977" e_score="1.000"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="120422" e_stop="119153" e_length="1270"/>
          </exon>
          <intron i_serial="1" don_prob="0.941" acc_prob="0.998">
            <gDNA_intron_boundary i_start="119152" i_stop="117854" i_length="1299"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="117853" e_stop="117624" e_length="230"/>
          </exon>
          <intron i_serial="2" don_prob="0.881" acc_prob="0.996">
            <gDNA_intron_boundary i_start="117623" i_stop="117532" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="117531" e_stop="117439" e_length="93"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.977">
            <gDNA_intron_boundary i_start="117438" i_stop="117297" i_length="142"/>
          </intron>
          <exon e_serial="4" e_score="0.987">
            <gDNA_exon_boundary e_start="117296" e_stop="116851" e_length="446"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120422" stop="119153"/>
              <exon start="117853" stop="117624"/>
              <exon start="117531" stop="117439"/>
              <exon start="117296" stop="116851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U315700" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCAAAAATAATCTCTCTATTTTAGATAGTTATTTGATTTTCTTAAATTTCATATCGATTCAAAATCAGACAAATAAATTGACTCGTACAAAAATTTATCCACTCTTAAATTGATACATCCACCTCTACCAACCTCTATAAACACCTCACCCACCTAACACAACAAATAGGCAAAAAAATAAACATAGTATTATTATATTGACACCAACTTTAACAAAACCAACAAAATTCTTTGGAGGGTATTAAGCCGTCGCTTATCTTCATCTTCTTCCTCTGATTCTGTACATTTTTCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGCAGACACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTATTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGAAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGATTCTGTTGCTGACCTTAGGAAGAATCTACAGGCAAGAGGGTCTGATCTTGTTGTTAGAATTGGGAAGCCGGAGACTGTGTTGGTGGAATTAGCTAAAGCTGTTGGAGCTGAAGCTGTGTATGCTCATAGGGAGGTTTCACATGATGAGGTTAAAGGGGAAGATAAGATTGATGCTGTAATGAAGGATGAGGGTTTGGAGGTGAAGTATTTCTGGGGTAGTACATTGTATCATGTTGATGATTTGCCTTTTAAGTTGGAGCAAATGCCTACGAATTACGGAGGCTTTAGGGAGAAAGTGCAGGGATTGGAGGTAAGGAAGACAATTGAGGCATTGGATCAATTGAGGGGATTGCCTGCTAGAGGTGATGTGGAACCTGGGGAGATTCCTTCGTTGGTTGATTTGGGGCTCAATCCTAGTGCCACCATGGGTCAG : AATGGAAAATCAGCTGCTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAAAGACTTAGAAAATTTGCAGCAGAATGTCAGGCCCAACCCAGTAAGGAAAACAAGGATGGCACAAATGACAGCATATATGGTGCAAACTTTTCTTGCAAAATATCGCCTTGGTTAGCTATGGGATGTCTCTCACCCCGTTCCATGTTTGATGAATTGAAGAAGTCCACTTCAAG : AACGATTTCTGCTGCCTCTGCCAAGAAAGATGGTGGTAGTGGCACTGGGCTGAACTGGCTGATGTACGAGCTGTTATGGAGGGATTTTTTCAG : ATTCATCACCAAGAAATATAGTGCTGCAAAACAAAATAGTGCTGCTCCAGTAACTACTTGCGTAGGAGCTGCTGCTTAACGATGGTATACTCAAAAGGAGAATGAAGGTTTCCTTTTTGTAGCTTGATTTATTTTTTCCGGAAGTTTAGCTGTGGAATGTTAGAGTTGGACTGCCATTGAATTGAAGCATTTTTTCTTTTGACAATAAGTGTTGAGACATAAAAGAATTTGTCGCCATTTCTAGCAAGTCGCTCTACAATCCTTCTTATGCTAGTATTTATATATTTTTGATTTCATCTGTAGTTGAAACAGGTGTGATAACAAACATACCTGTAGTTGAAATATGTGTTCCATGTTTGAGATTACCATCCATCTTGAACCCGCGGAGAGTATCCTTGAGCATCAGATGATTTACTATTGATACTCATTTCAATGTAAACTAGTTC</gDNA_template>
            <first_frame> I  K  N  N  L  S  I  L  D  S  Y  L  I  F  L  N  F  I  S  I  Q  N  Q  T  N  K  L  T  R  T  K  I  Y  P  L  L  N  *  Y  I  H  L  Y  Q  P  L  *  T  P  H  P  P  N  T  T  N  R  Q  K  N  K  H  S  I  I  I  L  T  P  T  L  T  K  P  T  K  F  F  G  G  Y  *  A  V  A  Y  L  H  L  L  P  L  I  L  Y  I  F  L  T  G  K  L  I  R  N  G  S  K  E  S  I  F  R  *  L  R  S  P  N  T  S  R  R  T  T  A  D  T  H  F  T  D  S  F  N  F  T  C  F  I  H  N  P  S  N  P  F  P  *  S  S  *  N  L  N  P  F  Q  Q  T  K  Q  S  Q  N  P  N  S  S  F  I  S  Y  K  S  L  T  F  S  F  F  S  S  T  Y  K  F  Q  I  Q  V  H  Y  F  C  *  P  S  S  E  Y  S  N  S  *  P  S  S  S  F  *  A  F  *  C  C  W  A  S  T  S  V  D  C  L  V  P  *  R  S  S  C  S  *  *  *  V  S  *  R  G  S  *  *  V  H  V  C  I  G  C  L  L  F  *  P  E  R  L  W  K  I  L  I  W  V  *  *  N  W  A  V  *  G  *  F  F  D  *  F  C  C  *  P  *  E  E  S  T  G  K  R  V  *  S  C  C  *  N  W  E  A  G  D  C  V  G  G  I  S  *  S  C  W  S  *  S  C  V  C  S  *  G  G  F  T  *  *  G  *  R  G  R  *  D  *  C  C  N  E  G  *  G  F  G  G  E  V  F  L  G  *  Y  I  V  S  C  *  *  F  A  F  *  V  G  A  N  A  Y  E  L  R  R  L  *  G  E  S  A  G  I  G  G  K  E  D  N  *  G  I  G  S  I  E  G  I  A  C  *  R  *  C  G  T  W  G  D  S  F  V  G  *  F  G  A  Q  S  *  C  H  H  G  S   : E  W  K  I  S  C  *  C  F  P  C  G  R  R  E  *  S  T  A  K  T  *  K  I  C  S  R  M  S  G  P  T  Q  *  G  K  Q  G  W  H  K  *  Q  H  I  W  C  K  L  F  L  Q  N  I  A  L  V  S  Y  G  M  S  L  T  P  F  H  V  *  *  I  E  E  V  H  F  K  :  N  D  F  C  C  L  C  Q  E  R  W  W  *  W  H  W  A  E  L  A  D  V  R  A  V  M  E  G  F  F  Q  :  I  H  H  Q  E  I  *  C  C  K  T  K  *  C  C  S  S  N  Y  L  R  R  S  C  C  L  T  M  V  Y  S  K  G  E  *  R  F  P  F  C  S  L  I  Y  F  F  R  K  F  S  C  G  M  L  E  L  D  C  H  *  I  E  A  F  F  L  L  T  I  S  V  E  T  *  K  N  L  S  P  F  L  A  S  R  S  T  I  L  L  M  L  V  F  I  Y  F  *  F  H  L  *  L  K  Q  V  *  *  Q  T  Y  L  *  L  K  Y  V  F  H  V  *  D  Y  H  P  S  *  T  R  G  E  Y  P  *  A  S  D  D  L  L  L  I  L  I  S  M  *  T  S   </first_frame>
            <second_frame>  S  K  I  I  S  L  F  *  I  V  I  *  F  S  *  I  S  Y  R  F  K  I  R  Q  I  N  *  L  V  Q  K  F  I  H  S  *  I  D  T  S  T  S  T  N  L  Y  K  H  L  T  H  L  T  Q  Q  I  G  K  K  I  N  I  V  L  L  Y  *  H  Q  L  *  Q  N  Q  Q  N  S  L  E  G  I  K  P  S  L  I  F  I  F  F  L  *  F  C  T  F  F  S  P  E  N  S  S  E  M  D  P  K  N  Q  F  S  D  N  S  E  A  Q  T  P  Q  E  E  Q  Q  Q  T  P  I  L  P  I  A  S  I  S  L  A  L  S  T  I  L  P  T  H  F  L  N  P  P  K  I  S  T  L  F  N  K  P  N  K  V  K  I  P  T  Q  V  S  S  L  T  N  L  S  L  S  A  S  S  L  P  P  T  N  S  K  F  K  S  T  I  S  A  N  P  L  Q  N  T  L  T  L  N  P  L  R  P  S  E  P  S  N  A  A  G  L  R  R  A  S  I  V  W  F  R  N  D  L  R  V  H  D  N  E  C  L  N  A  A  H  N  E  S  M  S  V  L  A  V  Y  C  F  D  P  R  D  Y  G  K  S  S  S  G  F  D  K  T  G  P  Y  R  A  S  F  L  I  D  S  V  A  D  L  R  K  N  L  Q  A  R  G  S  D  L  V  V  R  I  G  K  P  E  T  V  L  V  E  L  A  K  A  V  G  A  E  A  V  Y  A  H  R  E  V  S  H  D  E  V  K  G  E  D  K  I  D  A  V  M  K  D  E  G  L  E  V  K  Y  F  W  G  S  T  L  Y  H  V  D  D  L  P  F  K  L  E  Q  M  P  T  N  Y  G  G  F  R  E  K  V  Q  G  L  E  V  R  K  T  I  E  A  L  D  Q  L  R  G  L  P  A  R  G  D  V  E  P  G  E  I  P  S  L  V  D  L  G  L  N  P  S  A  T  M  G  Q  :  N  G  K  S  A  A  N  A  S  L  V  G  G  E  N  E  A  L  Q  R  L  R  K  F  A  A  E  C  Q  A  Q  P  S  K  E  N  K  D  G  T  N  D  S  I  Y  G  A  N  F  S  C  K  I  S  P  W  L  A  M  G  C  L  S  P  R  S  M  F  D  E  L  K  K  S  T  S  R :   T  I  S  A  A  S  A  K  K  D  G  G  S  G  T  G  L  N  W  L  M  Y  E  L  L  W  R  D  F  F  R :   F  I  T  K  K  Y  S  A  A  K  Q  N  S  A  A  P  V  T  T  C  V  G  A  A  A  *  R  W  Y  T  Q  K  E  N  E  G  F  L  F  V  A  *  F  I  F  S  G  S  L  A  V  E  C  *  S  W  T  A  I  E  L  K  H  F  F  F  *  Q  *  V  L  R  H  K  R  I  C  R  H  F  *  Q  V  A  L  Q  S  F  L  C  *  Y  L  Y  I  F  D  F  I  C  S  *  N  R  C  D  N  K  H  T  C  S  *  N  M  C  S  M  F  E  I  T  I  H  L  E  P  A  E  S  I  L  E  H  Q  M  I  Y  Y  *  Y  S  F  Q  C  K  L  V  </second_frame>
            <third_frame>   Q  K  *  S  L  Y  F  R  *  L  F  D  F  L  K  F  H  I  D  S  K  S  D  K  *  I  D  S  Y  K  N  L  S  T  L  K  L  I  H  P  P  L  P  T  S  I  N  T  S  P  T  *  H  N  K  *  A  K  K  *  T  *  Y  Y  Y  I  D  T  N  F  N  K  T  N  K  I  L  W  R  V  L  S  R  R  L  S  S  S  S  S  S  D  S  V  H  F  S  H  R  K  T  H  Q  K  W  I  Q  R  I  N  F  P  I  T  Q  K  P  K  H  L  K  K  N  N  S  R  H  P  F  Y  R  *  L  Q  F  H  L  L  Y  P  Q  S  F  Q  P  I  S  L  I  L  L  K  S  Q  P  F  S  T  N  Q  T  K  S  K  S  Q  L  K  F  H  L  L  Q  I  S  H  F  Q  L  L  L  F  H  L  Q  I  P  N  S  S  P  L  F  L  L  T  L  F  R  I  L  *  L  L  T  L  F  V  L  L  S  L  L  M  L  L  G  F  D  E  R  R  L  F  G  S  V  T  I  F  V  F  M  I  M  S  V  L  T  R  L  I  M  S  P  C  L  Y  W  L  F  T  V  L  T  R  E  I  M  E  N  P  H  L  G  L  I  K  L  G  R  I  G  L  V  F  *  L  I  L  L  L  T  L  G  R  I  Y  R  Q  E  G  L  I  L  L  L  E  L  G  S  R  R  L  C  W  W  N  *  L  K  L  L  E  L  K  L  C  M  L  I  G  R  F  H  M  M  R  L  K  G  K  I  R  L  M  L  *  *  R  M  R  V  W  R  *  S  I  S  G  V  V  H  C  I  M  L  M  I  C  L  L  S  W  S  K  C  L  R  I  T  E  A  L  G  R  K  C  R  D  W  R  *  G  R  Q  L  R  H  W  I  N  *  G  D  C  L  L  E  V  M  W  N  L  G  R  F  L  R  W  L  I  W  G  S  I  L  V  P  P  W  V  R :   M  E  N  Q  L  L  M  L  P  L  W  E  E  R  M  K  H  C  K  D  L  E  N  L  Q  Q  N  V  R  P  N  P  V  R  K  T  R  M  A  Q  M  T  A  Y  M  V  Q  T  F  L  A  K  Y  R  L  G  *  L  W  D  V  S  H  P  V  P  C  L  M  N  *  R  S  P  L  Q   : E  R  F  L  L  P  L  P  R  K  M  V  V  V  A  L  G  *  T  G  *  C  T  S  C  Y  G  G  I  F  S   : D  S  S  P  R  N  I  V  L  Q  N  K  I  V  L  L  Q  *  L  L  A  *  E  L  L  L  N  D  G  I  L  K  R  R  M  K  V  S  F  L  *  L  D  L  F  F  P  E  V  *  L  W  N  V  R  V  G  L  P  L  N  *  S  I  F  S  F  D  N  K  C  *  D  I  K  E  F  V  A  I  S  S  K  S  L  Y  N  P  S  Y  A  S  I  Y  I  F  L  I  S  S  V  V  E  T  G  V  I  T  N  I  P  V  V  E  I  C  V  P  C  L  R  L  P  S  I  L  N  P  R  R  V  S  L  S  I  R  *  F  T  I  D  T  H  F  N  V  N  *  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0038L16.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120145" stop="119153"/>
                    <exon start="117853" stop="117624"/>
                    <exon start="117531" stop="117439"/>
                    <exon start="117296" stop="117218"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1392</number_coding_nucleotides>
                  <number_encoded_amino_acids>464</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FCTFFSPENSSEMDPKNQFSDNSEAQTPQEEQQQTPILPIASISLALSTILPTHFLNPPKISTLFNKPNKVKIPTQVSSLTNLSLSASSLPPTNSKFKSTISANPLQNTLTLNPLRPSEPSNAAGLRRASIVWFRNDLRVHDNECLNAAHNESMSVLAVYCFDPRDYGKSSSGFDKTGPYRASFLIDSVADLRKNLQARGSDLVVRIGKPETVLVELAKAVGAEAVYAHREVSHDEVKGEDKIDAVMKDEGLEVKYFWGSTLYHVDDLPFKLEQMPTNYGGFREKVQGLEVRKTIEALDQLRGLPARGDVEPGEIPSLVDLGLNPSATMGQNGKSAANASLVGGENEALQRLRKFAAECQAQPSKENKDGTNDSIYGANFSCKISPWLAMGCLSPRSMFDELKKSTSRTISAASAKKDGGSGTGLNWLMYELLWRDFFRFITKKYSAAKQNSAAPVTTCVGAAA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0038L16.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="117081" stop="116887"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DIKEFVAISSKSLYNPSYASIYIFLISSVVETGVITNIPVVEICVPCLRLPSILNPRRVSLSIR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 29 chains have been computed
$ 
$ memory statistics:
$ 44272 bytes spliced alignments in total
$ 22 spliced alignments have been stored
$ 2012 bytes was the average size of a spliced alignment
$ 23368 bytes predicted gene locations in total
$ 14 predicted gene locations have been stored
$ 1669 bytes was the average size of a predicted gene location
$ 3 megabytes was the average size of the backtrace matrix
$ 34 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 13:15:47
-->
