<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-11-24 17:17:25"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="CT220-R" ref_strand="+" ref_description="CT220-R">
      <seq>gattcttataaagccgaattatctgtcaacagagtcaacctggtcaacgatggtaccgatggatcgaaacaaaagcagggctactcttgttgttctaggtgattaatgttatgtttcttgattccccttaagttttacaagaatggttcattaaattatttttgctggtcatactgtttattgatttgttaatggataaagtacttttgtaatggtcaggaacttaatatttatattctatatggcagctgaaatgataaatgtttattttccccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="+" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="11653" stop="12529"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11953" g_stop="12228" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="276" r_length="276" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="277" polyA_stop="293"/>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="+" ref_id="CT220-R" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>276</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="+"/>
        <rDNA rDNA_id="CT220-R" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11953" e_stop="12228"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTCTTATAAAGCCGAATTATCTGTCAACAGAGTCAACCTGGTCAACGATGGTACCGATGGATCGAAACAAAAGCAGGGCTACTCTTGTTGTTCTAGGTGATTAATGTTATGTTTCTTGATTCCCCTTAAGTTTTACAAGAATGGTTCATTAAATTATTTTTGCTGGTCATACTGTTTATTGATTTGTTAATGGATAAAGTACTTTTGTAATGGTCAGGAACTTAATATTTATATTCTATATGGCAGCTGAAATGATAAATGTTTATTTTCCCCA</genome_strand>
        <mrna_strand>GATTCTTATAAAGCCGAATTATCTGTCAACAGAGTCAACCTGGTCAACGATGGTACCGATGGATCGAAACAAAAGCAGGGCTACTCTTGTTGTTCTAGGTGATTAATGTTATGTTTCTTGATTCCCCTTAAGTTTTACAAGAATGGTTCATTAAATTATTTTTGCTGGTCATACTGTTTATTGATTTGTTAATGGATAAAGTACTTTTGTAATGGTCAGGAACTTAATATTTATATTCTATATGGCAGCTGAAATGATAAATGTTTATTTTCCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="CT220-F" ref_strand="+" ref_description="CT220-F">
      <seq>gggaaaataaacatttatcatttcgactgccatatagaatataaatatcaagttcctgaccattacaaaagtactttatccattaaccaatcaataaacagtataaccagccaaaataatttaatgaaccattcttgtaaaacttaaggggaatcaagaaacataactttaatcacctacaacaacaagagaagccctgcttttgtttcgatccatcggtaccatcgttgacccccctgactctgttgacagataattctgctttataacaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="-" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="12526" stop="11653"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12226" g_stop="11953" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="274" r_length="274" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="-" ref_id="CT220-F" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>274</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="-"/>
        <rDNA rDNA_id="CT220-F" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12226" e_stop="11953"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAAAATAAACATTTATCATTTCAGCTGCCATATAGAATATAAATATTAAGTTCCTGACCATTACAAAAGTACTTTATCCATTAACAAATCAATAAACAGTATGACCAGCAAAAATAATTTAATGAACCATTCTTGTAAAACTTAAGGGGAATCAAGAAACATAACATTAATCACCTAGAACAACAAGAGTAGCCCTGCTTTTGTTTCGATCCATCGGTACCATCGTTGACCAGGTTGACTCTGTTGACAGATAATTCGGCTTTATAAGAATC</genome_strand>
        <mrna_strand>GGGAAAATAAACATTTATCATTTCGACTGCCATATAGAATATAAATATCAAGTTCCTGACCATTACAAAAGTACTTTATCCATTAACCAATCAATAAACAGTATAACCAGCCAAAATAATTTAATGAACCATTCTTGTAAAACTTAAGGGGAATCAAGAAACATAACTTTAATCACCTACAACAACAAGAGAAGCCCTGCTTTTGTTTCGATCCATCGGTACCATCGTTGACCCCCCTGACTCTGTTGACAGATAATTCTGCTTTATAACAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="C2_At1g16970" ref_strand="+" ref_description="C2_At1g16970">
      <seq>tgttcaataaaatcttcgatatgtcaatggacctcgacccagatgaagtcttccgtgatgatgaagatgaccctgaaaatgaattcttcaaggaaagagataatactaaggagttcttggtatatcttgtggatgcttcacctaaaatgttttcctctacttgcccaacggatgatgaaaagattgcaactcattttcaagttgccgtcagctcaattgcacagtctctcagaactcagattattaataggtcttatgatgaagtttctatatgcttctttaacactcggggaaaaaagaacttgcaggacctaagtggcgtttatgtatttaatgtccgagaaagagaggatctggacagaccaacagctaggctaattaaagaatttgatcaaatagaagaaagatttgaaaaagaaataggaagtaagtacggcattgtgcctggctctcgtgacaattctctttacaatgctctttgggttgcacaagcccttctccgtaaaggatctgcaaaaactgctgatgaggacaacgatgcagcgtgccaaagatgctcaagatcttggtattacaattgagcttcttccactaagccggccagatgatgagttcaacgtttcccttttttatgctgatttacttggtctggagggtgatgaccttgctcagttcaaagctctgataggagaaaggtttgaagatctgaacgaccagcttaggaaacgcatgtttaagaagcgcagagttcgaagacttcgacttgtaatttttaatggattatctatcgaacttaacacctatgctttgatccgtccaactaatccagggacaattacttggcttgattcgatgactaatcttcctttgaagactgagagaaccttcatatgtgctgatactggtgctatagttcaggagcctctaaaacgctttcagtcttacaaaaatgagaatgtcatcttttctgcggatgagctttcagaagtcaaaagagtttcaactggacatcttcgtctgttgggcttcaagcctttgagctgcttaaaagactatcataacctgaagccagcaacttttgtctttcccagtgatgaggaagtggttggaagcacttgtcttttcgttgctctccaaagatcaatgttgcggcttaagcgttttgcagttgctttctatgggaatttaagtcatcctcaattggttgctcttgttgcacaagatgaagtaatgactcctagtggtcaagtcgagccaccagggatgcatctgatttatcttccatattctgatgatatcagacatgttgaagagcttcatactgatcctaattccgtgcctcatgccactgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="-" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="58678" stop="45865"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58378" g_stop="58287" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58286" i_stop="58109" i_length="178">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58108" g_stop="58031" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="170" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58030" i_stop="57017" i_length="1014">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57016" g_stop="56900" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="287" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56899" i_stop="56387" i_length="513">
            <donor d_prob="0.865" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56386" g_stop="56272" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="402" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56271" i_stop="55602" i_length="670">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="55601" g_stop="55496" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="508" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="55495" i_stop="55414" i_length="82">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.424" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="55413" g_stop="55397" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="525" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="55396" i_stop="55323" i_length="74">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="55322" g_stop="55296" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="552" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="55295" i_stop="55123" i_length="173">
            <donor d_prob="0.985" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="55122" g_stop="55039" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="553" r_stop="636" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="55038" i_stop="54966" i_length="73">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="54965" g_stop="54907" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="637" r_stop="695" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="54906" i_stop="53154" i_length="1753">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="53153" g_stop="53020" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="696" r_stop="829" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="53019" i_stop="52931" i_length="89">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.806" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="52930" g_stop="52887" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="830" r_stop="873" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="52886" i_stop="49919" i_length="2968">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="49918" g_stop="49842" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="874" r_stop="950" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="49841" i_stop="48474" i_length="1368">
            <donor d_prob="0.612" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="48473" g_stop="48326" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="951" r_stop="1098" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="48325" i_stop="47839" i_length="487">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="47838" g_stop="47777" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1099" r_stop="1160" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="14">
          <gDNA_intron_boundary i_start="47776" i_stop="47192" i_length="585">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.739" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="15">
          <gDNA_exon_boundary g_start="47191" g_stop="47131" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1161" r_stop="1221" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="15">
          <gDNA_intron_boundary i_start="47130" i_stop="46390" i_length="741">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="16">
          <gDNA_exon_boundary g_start="46389" g_stop="46297" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1222" r_stop="1314" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="16">
          <gDNA_intron_boundary i_start="46296" i_stop="46205" i_length="92">
            <donor d_prob="0.709" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="17">
          <gDNA_exon_boundary g_start="46204" g_stop="46165" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1315" r_stop="1354" r_length="40" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="-" ref_id="C2_At1g16970" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1354</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="-"/>
        <rDNA rDNA_id="C2_At1g16970" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58378" e_stop="58287"/>
          <exon e_start="58108" e_stop="58031"/>
          <exon e_start="57016" e_stop="56900"/>
          <exon e_start="56386" e_stop="56272"/>
          <exon e_start="55601" e_stop="55496"/>
          <exon e_start="55413" e_stop="55397"/>
          <exon e_start="55322" e_stop="55296"/>
          <exon e_start="55122" e_stop="55039"/>
          <exon e_start="54965" e_stop="54907"/>
          <exon e_start="53153" e_stop="53020"/>
          <exon e_start="52930" e_stop="52887"/>
          <exon e_start="49918" e_stop="49842"/>
          <exon e_start="48473" e_stop="48326"/>
          <exon e_start="47838" e_stop="47777"/>
          <exon e_start="47191" e_stop="47131"/>
          <exon e_start="46389" e_stop="46297"/>
          <exon e_start="46204" e_stop="46165"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTCAATAAAATCTTCGATATGTCAATGGACCTCGACCCAGATGAAGTCTTCCGTGATGATGAAGATGACCCTGAAAATGAATTCTTCAAGGTAAGCCCCCTTAACCTTTTTTGTTTGTTTTTTTAAAAAATTAGTGGAAATGGGTAAAATAAACATGCAGGAAAGAGATTCCTATAAGGAATTATTATGATTTTTCACTTTCTTGTTTGGGCTAAGATTGATTATCAAGCTCTTTGATATTTTTTATTTATCAAAACTAAACATTCAGGAAAGAGATAATACTAAGGAGTTCTTGGTATATCTTGTGGATGCTTCACCTAAAATGTTTTCCTCTACTTGCCCAACGGTTAGTCCTTTTTACCAGCTGTTTTTGTCATTTTGATTGATTTTGGTCATTTCCCGTTACTTCACTTCACTTCAAACTGATGAAGTTGACTTATTTCACTGTTAATTTCTGTTAGACATTAATTTATAATCTGATCGAGTAGAGTTCAAGGTGCCTTATCATTACATAGTAGTAAAGTCAGGTCCATTCATGTTTTGACCTCTTGGTCCATGCTCCAGTAGGACCTGGGCGTAAAGGGGTTGGTTGGTTAGAGTTGGCTTGATTTTCACATTTATTGGGGAATGGACCAGCGGTCTGCTTATATAGACTTGATCAATCACTCCCTCTTGAACTAACTTTTGGCGTTGCAAAGCACCACAATTAGGAGTTGTTTTTTCTGGAAAGGGACATCTCCTTGATGTTGGATTTCTATTGCTTTTTGTTAAATGGTAATGTGCATTTTAAGCTGTATGGTTAACAAACTGTTCATTTGGTAGAGATGAATAGAGAGACTTGGTGATAAGTTATTAAGCTAATAAAGATGGAACTTATATTAGAAGTCTAATTTATTATTATATAGAAAGGCATTTCTTGCAAAGCACATTTTTTTTTGAAACTTGTAATGAATATATATATTACAGTTGCACCATAACAGGGCAAAAGGACTTTACAAAATCCCAACCAAGCTTAAGCTACTGCTTCCCGAGGATCCTATCATATTAATAATCAACTAGTGATTAACCTTCTTAGCATATCTTTCAAAGCACAATTGTTAAAATGGTTCATGCGATATTCCTGGTGTCTTGTTGGTGTAATTTGAACTTGCTAGCTGGAGCTTGGAGGAACGAAAGGCTTAATTGGGCTAACAGCAGGTTCCGAATCAATATTTGGCACCTTGTTTGTGTTACTTTCATTAAAATATTCTAAAGGGATCCTAGGAGGCCTATTTTTCTTAAAAGCATCTTCTCAATTTCCTTTAGCATTTTCACCTTTTGATTGTAAATGTGGAATCCCACTCTTTCTTCATTTTTGCAGGATGATGAAAAGATTGCAACTCATTTTCAAGTTGCCGTCAGCTCAATTGCACAGTCTCTCAGAACTCAGATTATTAATAGGTCTTATGATGAAGTTTCTATATGCTTCTTTAACACTGTAAGCCCTTGTTCTCTAAAAGCTGTGACTTTGACAACCCTTTTATGATAATATCCTTAATCTCTGCTTTTCTCTATCTACAAAATTATTTCAGAGTTATACACCCCCCCCCCCACCCCCCAAAAAAAGAGGAAGAAAACAAAAAAATTAAATCCTGATGAATTAAGCTTTGCTGGACCTTCTTTTCCACCTTGGTTGTAACTTGAGAATTCTGTGTGGATTTGTATTTTTCTTTACTTGTGGGATCGAAGTCTTCCTTGTACTATATAAGTTTGATCAAATACTATTTAGGTGGGCCAGATGTATGTGCTCTTGTTATGCAGCAGACTAGGTGGGTTAAAATCTACTTCTATCAAGGCAAATTTGTTTTTGCTATTTCCCCCCTAATTAACACCTGTTTCAAGTTTTTGTTTGCTATTATTAGTATTTCCAAATTTTGATAAGGAAAAACCAAATTAGAGAATTTGTTTTTAGGTGATAATTTTTTCTTATGTTCTTTTTGTGTGATTTCAGCGGGGAAAAAAGAACTTGCAGGACCTAAGTGGCGTTTATGTATTTAATGTCCGAGAAAGAGAGGATCTGGACAGACCAACAGCTAGGCTAATTAAAGAATTTGATCAAATAGAAGGTAAATCATCATATTGGTCTCTAATTTAATTTTTGGTGGGCGTGTAGTATTGCACCTTTCTCTGTTTTGACTAGATTCAACATTGGTCCTCAATTTGCTTCATCATAGTCACATCATTACAGTCAAGATGCGCATAAGCAAAGTGACTCGTGCCAAGTTGTCGTATCATCATTTCGTCTTTTTTTCCCTTGTAAATATGAGCTGTTTCTCAGACTTAAGAGGAAAACTCATCCATGAAGGTGCTCTTAATTTTTCTTCATTAGCAACTTTAACTCCACACTTAAATTTCAGTTTTTGCAGTTAAACCTTAGTGCTTCCTATACTTTGCACTCTGAGGACTCTGGCTTGTTGTCAATCTTCCTAAAGGAACATAGGCTCTTGAATATATGTAGAAGCAGTCATTTTTACTGACTCTTCACAATCGTCTTATGGAGTACTTTATTAGTCCTTGTTTGACCAGCAAACTGGAAAACCCTAAAATGATGTTATTTCATACTTAATTAATAATTATGCGTAGAATTTTCTGCTATGTCAAAATGGACTAAGAATTCATCCTCTATACAATCAGTTAAATGTCTTGCCTCATCAATGAATAAACTCAAGGAAAAACAGTGTGAACTTTTTTGGTTTTTAGACTTGTACTGCAATTACCTGTTTAATTTGTTTGCAGAAAGATTTGAAAAAGAAATAGGAAGTAAGTACGGCATTGTGCCTGGCTCTCGTGACAATTCTCTTTACAATGCTCTTTGGGTTGCACAAGCCCTTCTCCGTAAAGGGTAAAATTTGCTCATTTCCTTTTTGTTTTCCCCTGAAATGATGTGCACCCTCTTCATTTACTGGTGTTCAAACCATTTCCAGATCTGCAAAAACTGCTGATAAACGTATTCTCTTGCTTACAAATGAAGATGATCCTTTTGGTAATCTCAAAGGTGTCATAAAAGTGGATATGATGAGGACAACGATGCAGCGTGCCAAAGTATAGTATCTTGCCACATATTTATATATTAATATTATAGTCAGTTGAAAACAAGTCCCAAAAGAAAAAGTAAATTTATGTGAAGATAAATAACTCTGAGTGACTGTGATTGTTTTGTGACTTCTTGAACGATTATTACACAATTATTCTACTCATAGCGCTAATGGTTGCAGGATGCTCAAGATCTTGGTATTACAATTGAGCTTCTTCCACTAAGCCGGCCAGATGATGAGTTCAACGTTTCCCTTTTTTATGCTGTATGACCATTATTTATTTTTGAGATCCTTTGTTGCATGTTGTTATTATCTAATTCTAGATCTTTGGCTTCAGGATTTACTTGGTCTGGAGGGTGATGACCTTGCTCAGTTCAAAGCTCTGATAGGAGAAAGGTATACTTTACAAAAGATTCCAACTGTTGAGGATTCCCCTTGGATAGTTGTGAGCTATTCAAGTTTATTAGTATGCTCAGTATATGTATGGCTGTCTCATATGATTGCACTAGTCAGTTGACGAATCTCCATCTAAAAAGTTAACTACTTTCTGAAAGACTTGATACTTGTTGACACAATTTACTGTAGTGTGCTTAAGAATTTGTTACATATATTCATTAAACGAGTCCAAATAATAACTTGTTACATTTAGTCATGCTTTCTTTCAGTGATCGAGATGATTTAGTCATTTGTTGTGTAGATATTTTTCTAAGTGATCTAATGTTCATGAAGATTTAGTATGATGGCAATATGAAATGAGCTTAAATAAAGAAGTGGCTATTCATATAGTCGAAGGCAACTTGCTTGGGACTACGATTTAGTTGTTGTCTATCTAATGTGTAGTTGTTGATCTAATGTTCAAGAAGAACCAAAGCACCTAAGTTTTCTTTCCTACAGCTTATTATAGTAGTGTTAGGAAGTTTCATGCTGGAAGCATGAATGGTTGCACCTATGGTCTCCATTTCTTGAAAGATCATGGAGTGAAGTACTGATTGAAATTCAGATTCTTGTATGTTAATACTCAGAGTTCTCTATCTGTTTCTTAAGATGAATTTGTCCTTATGTCTAGGCATTTATACAATGTCTGGGAGTATGCATGATTTTTTTGGGTAAGTAACACAACGTAGTTATAATACTATTGAAGTTTCTAAAATAATTGCTATACAGACAGATTGCTGAGGGACTGGCAAAGGTATACAAGACAGACAAGATAATTGTCCAATATAATTAGGTACAGACATTATAAGTCTGGTAAATGAAAATAGGAAAATATATTTTCCAATACCATGTGGTTTTTCCGTTGGAGTAGCATTGAACAGACATGAATACAGTGAAAAAGAAATAGAACTTCGACATTAGAGGGCCTGAACATGCAAAAGGACATAAAATAACATCAATTTGTGTATTACACAATTAGAAAAGCGTAATACATTTTTTTTTTAAAAAAAAGGTAGCATAATACCAAAGAGAGAATATAGAATCTCCAGACTATCAGCAAAGCTCCTTTACCTTCCCATTTCAGGCTTCGCTGAAGGAAAGATTCCATTTCTTCAATAGGTGTTGCTTACTGGAAAACTTACTCAGTTATATGAATTATAGTCTTAAACAAGGAGGCTTTTTTTAAGTGGATGAAGATGGAAGGAAGATGATCTATTTTGTGCATTCAGAGAGAAATGAGGGTCCAAAAGGGTGATATGAATGTTCACAAATTTACTTGTTAGATTTATTTATTTATTCTCGATTGATGAAATGAATACTCGAATGTAGAAAACCAAATAACATGAAGGTGAGATGACCAGATCTGGTAATTGGGTTGAATGCAATTTGTGCAGGCATTCAAGATCTGGTGCATGTGTTTTGTACGCTGTTAAACAGCTCAAGCTTGTACATGTCCTTTGTTCATGTAGGAATCTGATTGGTGTGTGTTTTGTGCCCATGTAAATTATGCATTTTTATAACTTCCTGCATTTCCAAAATTTGTGGTTTTATTCTTTATGATTAAGATGGCTAGATAATAGATGTCAGTTTGCAAGGTGTTAAGGTGTTGAATACACTTTGAGCCTGTTAGATTTGATATTCTTTTAGCCTAAATTTACTGAAATTGTATTGGTCCCTGTTTTCATGTGTTCCTTTCGTATGTTTGCTATATCAGGTTTGAAGATCTGAACGACCAGCTTAGGAAACGCATGTTTAAGAAGCGCAGAGTTCGAAGACTTCGACTTGTAATTTTTAATGGATTATCTATCGAACTTAACACCTATGCTTTGATCCGTCCAACTAATCCAGGTCTGCCTTTTTTATCCCATCTTTTATTAGGTAATGATTAACGTGAGGCGACTATAAGTAAACGCTATGCCCTTATTATTTTTCTGTAGGGACAATTACTTGGCTTGATTCGATGACTAATCTTCCTTTGAAGGTACTTTTTAGCTTCGTCGTCATGCTTTGTTTTAACCTTGTTTCTTCTGTTCTTTGGAAGTTCCTTATCAATTTTGTTGTGTTTATGTATGTCTCTTGTTTAGTGGGAGGGGGATTAAGAGAATTATTGTTCATAACTAACCTTTGCACTTCTTGGGGTTTTGATTTTTATTAGTTCTGATTGTAATGGATTTGGAGCAATCTTTTGTTTATTCGTTGAGGGTTCATTGTTGTTTTCTTTCTTACGGTCATTTCGTCCAAAGAAAAATCTCATTTGACCATCTATCTTTCAATATATTTGTCAGCCTTTGTAGCTATACATTTTTGTGAAAGAGCCAGTATAAGTTTTTCATTTCACTTCTCTGTACATCCCAATTATACAACAATTTTTTTGGTTTTCCTTGCCGACCAGTCATGTGAAGACACTCTTAGGTCAATGAATATCCTAAGGAGCCAATGAATCCGTAGTTAAACAAACAGGGAACCTTGTAAGAAAATTGTCAGGATATTTATCAAAAATGTTGTTATTTACCAAACAAATCCTTCTATAGCATTTTAGGCGCTCGTATTTCTAATACTATAAGTTTTCTTAGTTCACATTCTATCTTGAAAAAATAATATAGAATCCCGTTATATGTTATTTATGCGACTTATGTGATTATAGGGGAATTAAACAGTGTTACCATTGTAATGCATTTATAGTAATGCAAAGTTTTATACCACAAACTAAATAGTGGTTTTTTTTTAAAGAAAGGTGACGTTTACTTCTATATATCTACAGGTATACTACATTAAAGTGTAGTCCCCCTCCAAAAAGTTCTACTTACATCATTCCTAGGATCTTTTAGTTACAGCCAATCAATAACACATCTTCAATAACTCCTATCACTACTGCTTGCACTAAAATAGTATAGTTCTAGGCAGTTCGTCTTTATCTTCTGAATATTGTTCTGAATTCCTAAAAAACATCTTTGATTCCTTTCCCTCCAAATTTCCACCAAATGCAAGCGGGGAAATCCTCCATCTCTTCTCTTTTTTTTCTCCTGCATTTTCATTCATGTTCCAGCATTGTAGGACTTCTATAATTCTCCCTGGCTTTGTCCACTTGATCTTCCTCTTGCGGATGAACATCTGCCATGATTGATCTGTCCATTTGCAGTGTAGAAAGAGAAGGTTGACCGTCTCCACCTGTTTTTCACATAGATAGCATCTAGAACACAGATTAGATTCCTCTTGTTCAAGTTCTCATGTGTCAAGACTGCCTCCTTTATCAAGAGCCATGTGAAGTAGTTCACCTTGTAGGGAATTTCTGTTCTCCAGATCATCCTCCAGGGCCATCCTGTTTGCTGCACCTCAGTAGAACTGAGTTCTCTGTATGCTGATTTTACAGTGAATTCTCCCCCCCTCCTCCCCTTACATAATAGTCCATGTTCCTCTCCTGTCAGATTGGTAGCCATATGCATTGTGTGATGAAATTCTTGTTATGGTTGTCATTTCCTAATCATTTAGGTTCCTTCTTAGAAACAGGTTCCACCCTTGTCCTGTCCATAATTCTGCGATTGTTTTTATTTGTGCTTGGTTCAGGCTATGTAGCACAGTGAAAGCATGTTTGAGTGTCTCCTTTCCACACCAAATGTCATTCCAGAAAGCTACTTTTTCTCCACTGCCCACCTTACAACTTGTTCTCTCCCTGACTTGTTGCCATAGGTTCCTGATAGATCTCCCATACACTACAATTATAAGGGTTGGTCACCACATCTGTCATCCATTTGTTCCTCCATGCCATATTTTTCTATTATTACTTCCTTCCATAGAGATACTTCTGGTGAGACAAATTTCCACAGTCAATTCATCATCAAGCTCTTGTTTTGGGTAATCAGCTTTCTAATCTAAATGTTTTGTTTTATATTGATTACTACACTGAAATTACTATGTATTATACAGGTAATCAAACAAGCTCGTAGAGCTGATGTAGTTCATTGGAGAAGTTATTGTGTCTACTAGGTCTGTTAGATCTAGGACATAAGTTTTACTAAATGAGAAGAGTATTATAGTTGAAACTGAAATTTTTTTGTGAAAGTTAAAGATGTGTTCGAGAATGAATGGAGAAGTATTTTGTGGTCGTTGAAGATTTGAGATTAGAAACCTGTGTTTCACTTGAAATACACCTTTAAACCAATACCTCAATCTTTCACCTAGCGTTCAAATGCTTATATATTTATGGCCGAACATGTTTTTGCAAATACTGATGTGCCGTATTTGTAAATATTGAAATATTATGACAAACCGGCCCTTGGTTTTAGAATGAAATAGTTTCAGCCTAGAGCGGGTTGGACATAGAGGATTGTTATAGCTGGCCCCAATGAGTTTGAGATTGAGGAGGAGTTGATTGGTTTGGTTTTTATGTAGAGTCTAAGCATTTAAATTTGTATAATGTTTGCATAGTAGAAGATAAAAAACAGTTGGGGGCTGTAGGTGAGAGAGGGTATGCTGGGAAACATTTATGTATAACATAGTTGAAATTGGATAGACTGTTATACATAATGGGATTAACTTCGGGGTGGGCTGTATGTTGGGAAGGTGTTACAGGTGGTTGTGGAGCTACATAATGTCTCATATAGGATATTTTTTTTCAACAAAAAGAAGACTCAACTTCGTATAAGGAATTTCTAAACGTCTGAGCTGTTCCATTGCCTTGTATTGTTTTGTTGGACGCTCAAATTCAACACATGTTTCATGCATGGAGCGACAATAAGTTTTTGCCATGTTATTTTAATATATGGTTAGTTATTGAGGAATTTTGTGTCAGCTTGTTTCTGAATCCCACTTACTAGGGAAAGTCGCCATTTCTAAGTTGTCATTTATCATTGAAGTTGGTAGAAAAGTTGATGAAATGTCAGTTCTGGTTTGTGTTGGGATTTGGTATAAAGCAAGTCTTTAACCTCTTCTATGTTCTTCCTTGTTTACAGACTGAGAGAACCTTCATATGTGCTGATACTGGTGCTATAGTTCAGGAGCCTCTAAAACGCTTTCAGTCTTACAAAAAGTCGGTATCTGTTTCTTAAAAGAATGACTCCCTCTTCTTCTACTCTGAATCTAGATTTCTCTCTTCAATTATTCTTATTTTAGATAAATGTGTGTGGCGGCATTTTTCATGTTTCTTCCAAATCTTCTTATTATGTGTGTGTGTGTGTGTGTGCATATATATATATATATATATATTTATTTATTTATTTTAAAAAATATTATTTTTGGACAAATTATCTTCTTATTATATATATTTAACAATTTAATATGAAACTGCAAATTACTTTTTCTAGTGTTTAATAAATTGGGAATTGGAAATCAATTTGTATCGGAGTACCATTCTATGGCCTACAATTATATTTTACTGATGATCATTTTGAGTGCTTTAATTAAAGTTGTCATTATGAATGTTGAAATTAGTCAGTCTAGCTACAATGTGATGTTACAGGTACTGAATTCATGCATGTTAGTTAAACCTTTTATTTTTGAAAATCCTGCACTACCCTTTGAAGAAGTGTAAGTTCTCTTCTCTTTTCTTAATGCTCCATATGTTTTGTTGACTTTTTTGCTTTGTCCTATAAAAGACTGAAGAATATTATGTTATTAATGAAGTGGTGGGAGAACCATGAGGTTTCAGTTTCATTAGAGATAAAATAAACACAAGGTGATATTTCCTCATTTGCCCAAGCCTTGGGGGAATACCTGATAAGAGTACTGGCAGGATGTAGTAGATATTAGATGAAATTAGTCAAGGTGCACACAATCTGACCATATACCACCATCATAAATAGAATGTGCCATATTTCAGAACCCAAAAAATTGTAGGAGACCTTCCCTATTTCACGTTACTCAACCTCCTATATCCTATTTAGAGAGTGTTCCCATATCTTGTCAACAATCAATTTCAGTAAAACTTTTTCACTTCCAACGGGTAGAGTGAATTATTATTTGTTTCTTTGGAAACACTTCAAAATTTAACCTCTAACGATAGCTCGTACTACCAGAAGATAGTAAAAAAGACAAAATCAAAGGAAGAACAATCTCTTTATAGATTATCCATAGAGAAGTCAAAACATTACCAAGCCTCTCCACAGACTATATTAGTATTCAGCTCCTAACAGTGCTCTTTTGTTGCATTTTGTCCAATTTTTTCTGATTAATTCAAGAGAATATGGATAGATTGTAACATGGAACGGGGTGTTAGATCCTCATCATTTATGTATTGAAAAAGATTATGTAGTGAACTTGGATATCCTAGAAGAAATTCACATTTGAGTTTCCTTGATTTGCTAAATTTTGCTTCACTGAATTACCAAATGACCAGCCCAACTCAACTCTGGTAGACTTATTCAACCGTTCACTGATGTCTTGTGCCTTTTTGTTTCAGTGAGAATGTCATCTTTTCTGCGGATGAGCTTTCAGAAGTCAAAAGAGTTTCAACTGGACATCTTCGTCTGTTGGGCTTCAAGCCTTTGAGCTGCTTAAAAGACTATCATAACCTGAAGCCAGCAACTTTTGTCTTTCCCAGTGATGAGGTGTTCTTTTCAATAATCCACCTTCATTTTTCTTCTTTTGGTTCAGTATATGGTCATTGTTAAAGGTTATTCACAGTCCTCAGGCGTCTTCATTCTCGACAAGCTAAGCTGGTTAATATTGTCCAAATGCTACTAGTTAGATTTTTTTATTTGAAGCACTCTAAAATATGTTAGTTTTGTCAATTTATATTGCTGATAGATGGGATATTGGATTGGATCATTTCACCTTTTAAAACTACATCTAGAAATGAGTCTGATGAGTCAACTTGATTTGTGCTTTATTTCTACGTTTCTATATCTATCTTCATGTCCTTATGGCATAGTTAATCAAATTCAGCTTTTAACAGCTTGGACTATGCAGTACCAATGATTTCTTACCATACAACTTTACCACTTCGATCCATCATTTGGGAATACTTTTCACTATCTCCTATAATATGTCATTTCCATGATGATCAATTCTATTGCTTCTCCTTGGTACTTGCAGGAAGTGGTTGGAAGCACTTGTCTTTTCGTTGCTCTCCAAAGATCAATGTTGCGGCTTAAGCGGTTAGTATGCCTGAAAATTTTGTTAATTTAATTAGCAAACAGGGTTAAGTTAATAGTAGGGAGTGATAAGTTCAGTCTTGCATGTTTTGACCTGTTATCTCTATTTAGAAGTGGCTGGATGCTCTTTTTCTTAGGTAAAAGTCCATCCGTTCTTCATTCAACTGGGTTTTCATTTTCATTTTAGTCACTGTTTATACTGTTTTGTCTATTTAAATACGAAAAATGTGTCTCTAGTCAGCCTTTTGTCTAAAGTAATTCATGCAACTGTTTTGTTGTCTTTCTCTCCTTCTCATTTCACCTTATCTTAGGTAGTTTGAACTACTCTATCAGCATCCCACTGTGCTAAATCTTGTTTGAAGTTGTATATAAGCAGTCTGCAGTAGTGCTAGCTAGCTTTGATCTCAACTATTACGGAAGTGGCACATGTTGCTGACTTACGGACATTTTTCTGCTTGCCTTCTCGCATTAAGATTAGTTTGCAAATGTTTATTTTTGCTCGACTGTAGAAATAAGTTAATAATCTCTCTGTTGCTGTGCTTGCTGAGTGTGTTGCTGTTTTGTGTTTGACTTTAAGTATCATCACAGTTTTGCAGTTGCTTTCTATGGGAATTTAAGTCATCCTCAATTGGTTGCTCTTGTTGCACAAGTAAGACATTGTTTTTCCTCTCCAAATCCTTTCGGATTATATATAGACTAAATCTACCTATTAATGCACCTGTGATTGCGGGGTCAGTGATTGCCAACACCTCTGACATGCACTGAAGGATGTATTGAGTGTGATGGTGAGACAACAATCCAAGTATATAATTTGATACAATCACTAAGAATAGTCTTAACGACTTTATTTGTTCGTGAAATTCAAAAGAGATCTACTAAGAAGTATTAAGTCGGACATTCTTAATCCTTGTGCGATCATAATTTCAGGATTCCAAGAATTAAAAAAACTTCAATTGCTTTTTTGTGTGTTTCACTAATTTTCATGAGAGTTTCTTCTCTCCTTTTTAACAAAATTCTCTTTTCAAATGGCATTGGAGCCTCTGCGATTTCGATAGGGACTTAAGTAGCTTATGCCTACTCGCTTCTCATGCGAGGTGAAAGTTTTCCCTTTTTCGTTTCAGAGTTCAATCACCTCTTTCCTGATCACTTTTTGCAACCATGCATTTTATTTTTTTTGGGGGGGGGGTGTTGGTAACACCAGCACTCTTTTTGATAATTTTTTTCAAGTCCAGCATACCTTGTATAACTTTTTAAGTGCATTCAAACTTCTCAGTGGAAATTGGGTGGAGGGAGTAGCCTTTTTTGGTGTATTCTTTTCTGTGTGAAGTTGTGAATAATGACAAACTTTTACCTGTTGGTCTTCCATTTTCATGGTTTTTGATAAATGCAGGATGAAGTAATGACTCCTAGTGGTCAAGTCGAGCCACCAGGGATGCATCTGATTTATCTTCCATATTCTGATGATATCAGACATGTTGAAGAGGCAGGCAGATTATGTCTTAGTCACAATTGATTTCTTTTTCTATTTTGAAAAATCATGAAGTCTATATCTAACGAATGTGGTTTTACTTGCAGCTTCATACTGATCCTAATTCCGTGCCTCATGCCACTGATG</genome_strand>
        <mrna_strand>TGTTCAATAAAATCTTCGATATGTCAATGGACCTCGACCCAGATGAAGTCTTCCGTGATGATGAAGATGACCCTGAAAATGAATTCTTCAAG..................................................................................................................................................................................GAAAGAGATAATACTAAGGAGTTCTTGGTATATCTTGTGGATGCTTCACCTAAAATGTTTTCCTCTACTTGCCCAACG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATGAAAAGATTGCAACTCATTTTCAAGTTGCCGTCAGCTCAATTGCACAGTCTCTCAGAACTCAGATTATTAATAGGTCTTATGATGAAGTTTCTATATGCTTCTTTAACACT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGGGAAAAAAGAACTTGCAGGACCTAAGTGGCGTTTATGTATTTAATGTCCGAGAAAGAGAGGATCTGGACAGACCAACAGCTAGGCTAATTAAAGAATTTGATCAAATAGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGATTTGAAAAAGAAATAGGAAGTAAGTACGGCATTGTGCCTGGCTCTCGTGACAATTCTCTTTACAATGCTCTTTGGGTTGCACAAGCCCTTCTCCGTAAAGG..................................................................................ATCTGCAAAAACTGCTG..........................................................................ATGAGGACAACGATGCAGCGTGCCAAA.............................................................................................................................................................................GATGCTCAAGATCTTGGTATTACAATTGAGCTTCTTCCACTAAGCCGGCCAGATGATGAGTTCAACGTTTCCCTTTTTTATGCT.........................................................................GATTTACTTGGTCTGGAGGGTGATGACCTTGCTCAGTTCAAAGCTCTGATAGGAGAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGAAGATCTGAACGACCAGCTTAGGAAACGCATGTTTAAGAAGCGCAGAGTTCGAAGACTTCGACTTGTAATTTTTAATGGATTATCTATCGAACTTAACACCTATGCTTTGATCCGTCCAACTAATCCAG.........................................................................................GGACAATTACTTGGCTTGATTCGATGACTAATCTTCCTTTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGAGAGAACCTTCATATGTGCTGATACTGGTGCTATAGTTCAGGAGCCTCTAAAACGCTTTCAGTCTTACAAAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGAATGTCATCTTTTCTGCGGATGAGCTTTCAGAAGTCAAAAGAGTTTCAACTGGACATCTTCGTCTGTTGGGCTTCAAGCCTTTGAGCTGCTTAAAAGACTATCATAACCTGAAGCCAGCAACTTTTGTCTTTCCCAGTGATGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGGTTGGAAGCACTTGTCTTTTCGTTGCTCTCCAAAGATCAATGTTGCGGCTTAAGCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGCAGTTGCTTTCTATGGGAATTTAAGTCATCCTCAATTGGTTGCTCTTGTTGCACAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAAGTAATGACTCCTAGTGGTCAAGTCGAGCCACCAGGGATGCATCTGATTTATCTTCCATATTCTGATGATATCAGACATGTTGAAGAG............................................................................................CTTCATACTGATCCTAATTCCGTGCCTCATGCCACTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="T0985" ref_strand="+" ref_description="T0985">
      <seq>cccccttttccggttcgcgaggaagatgaggagattgaagccgagggtgctaattatcaacttgaaatgatgcgatgcctgagggaggttaatgttgacaacaacaccgttggttggtatcaatcaactttgtttggttcatatcaaacagtggaactgatagagaccttcatgaattaccaggagaatataaaacgttgtgtctgcataatctatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="+" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="121295" stop="123858"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121499" g_stop="121510" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="0.750"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121511" i_stop="121598" i_length="88">
            <donor d_prob="0.838" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121599" g_stop="121702" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="116" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121703" i_stop="122260" i_length="558">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="122261" g_stop="122327" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="183" r_length="67" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="122328" i_stop="123522" i_length="1195">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123523" g_stop="123558" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="219" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="+" ref_id="T0985" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>219</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="+"/>
        <rDNA rDNA_id="T0985" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121499" e_stop="121510"/>
          <exon e_start="121599" e_stop="121702"/>
          <exon e_start="122261" e_stop="122327"/>
          <exon e_start="123523" e_stop="123558"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCTTTTCCGGTATGGTGAAGTCTGGTGTTTCTTGCTTCTTCTTTATACAGTTTCGATATTATTTGAACTAACTCTTTTTCACATCTATTTTACTCAGGTTCGCGAGGAAGATGAGGAGATTGAAGCCGAGGGTGCTAATTATCAACTTGAAATGATGCGATGCCTGAGGGAGGTTAATGTTGACAACAACACCGTTGGTTGGTAAGAGAGCTTTTTGACTATTAAGCCATCATTTAATCTGGTTAGAACTATGAGGTTCCTTCTTTCTAATTAAGAAATTATTTTTGTCTTTGTGCTAGTTCTCTATTATACTCATTGCTAACCTTTTATTCAGGCAAACATTCTTTTTCTGGGCTGGTGGTACTGTGTGATATGCATTTTCTTTCATCACTATTTCATTTATATTTAAGTATAAACATCTTTTTTCTTGAAATGCTTAGAATATGTATATCTATACCCTTAAGTCTAGAAATGGACAATGTACGACATTTGATGGCCTGATTGCATTTCCGCAGCCTAAAAAGTTACAGTGTTTAAATTTTGCCAGCTCCAAGGCAGTGAAGAGAAAGTTATTATCAAAAAAGGGAGTAACAAAACTGTCATACATGTTAACAATAATAAAACTGTCTTACTTGTTACACAGTAGTGAGAAAGACATGAAAAGCTTGCTCTACCTTTCTTTCCTACATAATTGTCATCTTAACTTTTACTATTACTAATTTGCTCATAATATGGACCTCATTGATGGTTATTTTCCAGGTATCAATCAACTTTGTTTGGTTCATATCAGACAGTGGAACTGATAGAGACCTTCATGAATTACCAGGTATCCATCTCTATGTCCATCTCTCATTGTTGGATTCTGAACTTTCAGTTTCTGCAGCGACCTTAGGTATACTGCACTTATCCTGCAAGTCATTTTCAGTTTAGATAATGTCATGTGGCAACCCCCTTTGTGCTGGCCCTAGGAAGAAAAGGGAGAAAGGATGAAATTAACAACACTGTAGAACTGTTTTTTGTAGTGATGCTAAATGAGTCCAAGGCATTCCAAACTGTGTTACCATTTTAGTAAAGTTTAAATACCTGGGCTCTATGCGTGATAGACCAGTGCATCATGCAAATGACCTGCAGATTAGCAAGACTAATGCCCTGAAGTTCTTTAACCACCCGTTTGCAGCTTAAGACTCGAACAAAATCTAGTGACTGATCAGACCGCCAACATATGTTAGGTAAAAGATAACTAAAACCTTGTTGCTCTAGTGGAATAACAAATGCAAAATGGTTTTTTTGTTAGCCTTTAATGAATGTAATTAGCTAAGGACAATGTAAATATACTTATCTTTCAATGGATGTAACCGTTTTGATTGGCAAGGATGAGGAAAAGCTCATGGAACCAGATCAAACCTATATGCAGGGAACGAGTCAAGTTTGAGTGTGAGCCTTGTAAATTTCAGATTCCAACAATCAATCATGTTGGATAGTGAACTTTGAAGAAATTAGAAAGTGATCATCCATTACCCAAAATTAGATAGTTTATGCCCCACACTTCAACAGGTACTGAAGGAGTAAATGATTTTTTTTGCGATAATGGAGGTATCTGGTTACCTAGCAAGGCAAGCCCCAAAGACAAGGATATGGAGTCCTTATTATTAAATGTAGCATGGAAATGTAATTCATGTTGGAATTTGAGGGGTAAAATTGCTGCTCAAGGTCCACTGAGATCAATTGCTTGAGTCAAACATCCATGAATAAGATCTTAAAGTCAAATGCCACTAGCTGTTGTCAATTCTTGCCTGAGTTATTTATTATCCTTTGCATGGAAAACCTACTAGCGTTCCTCATTTGTTGATCTTTTAAATATATAACACTTGGTACTGTAAATAAAGTAATATTCTTTCTGATTTTTTTCTTAATCTTTTTTCTTAAGATGTTGGCTTGAATAGGTGCTTCTGTATTTTTCATTAGTTGGTATTGGATGTGAACAATTCATTGTACTTAGACTCTGATGTTTGTGATTGCAGGAGAATATAAAACGTTGTGTCTGCATAATCTATGAT</genome_strand>
        <mrna_strand>CCCCCTTTTCCG........................................................................................GTTCGCGAGGAAGATGAGGAGATTGAAGCCGAGGGTGCTAATTATCAACTTGAAATGATGCGATGCCTGAGGGAGGTTAATGTTGACAACAACACCGTTGGTTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCAATCAACTTTGTTTGGTTCATATCAAACAGTGGAACTGATAGAGACCTTCATGAATTACCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAATATAAAACGTTGTGTCTGCATAATCTATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>4</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="11953" PGL_stop="12228"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11953" e_stop="12228"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="11953" e_stop="12228" e_length="276"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11953" stop="12228"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="CT220-R" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATTCTTATAAAGCCGAATTATCTGTCAACAGAGTCAACCTGGTCAACGATGGTACCGATGGATCGAAACAAAAGCAGGGCTACTCTTGTTGTTCTAGGTGATTAATGTTATGTTTCTTGATTCCCCTTAAGTTTTACAAGAATGGTTCATTAAATTATTTTTGCTGGTCATACTGTTTATTGATTTGTTAATGGATAAAGTACTTTTGTAATGGTCAGGAACTTAATATTTATATTCTATATGGCAGCTGAAATGATAAATGTTTATTTTCCCCA</gDNA_template>
            <first_frame> D  S  Y  K  A  E  L  S  V  N  R  V  N  L  V  N  D  G  T  D  G  S  K  Q  K  Q  G  Y  S  C  C  S  R  *  L  M  L  C  F  L  I  P  L  K  F  Y  K  N  G  S  L  N  Y  F  C  W  S  Y  C  L  L  I  C  *  W  I  K  Y  F  C  N  G  Q  E  L  N  I  Y  I  L  Y  G  S  *  N  D  K  C  L  F  S  P </first_frame>
            <second_frame>  I  L  I  K  P  N  Y  L  S  T  E  S  T  W  S  T  M  V  P  M  D  R  N  K  S  R  A  T  L  V  V  L  G  D  *  C  Y  V  S  *  F  P  L  S  F  T  R  M  V  H  *  I  I  F  A  G  H  T  V  Y  *  F  V  N  G  *  S  T  F  V  M  V  R  N  L  I  F  I  F  Y  M  A  A  E  M  I  N  V  Y  F  P   </second_frame>
            <third_frame>   F  L  *  S  R  I  I  C  Q  Q  S  Q  P  G  Q  R  W  Y  R  W  I  E  T  K  A  G  L  L  L  L  F  *  V  I  N  V  M  F  L  D  S  P  *  V  L  Q  E  W  F  I  K  L  F  L  L  V  I  L  F  I  D  L  L  M  D  K  V  L  L  *  W  S  G  T  *  Y  L  Y  S  I  W  Q  L  K  *  *  M  F  I  F  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0059I05.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="12226" PGL_stop="11953"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12226" e_stop="11953"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.945"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.945">
            <gDNA_exon_boundary e_start="12226" e_stop="11953" e_length="274"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12226" stop="11953"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="CT220-F" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGGAAAATAAACATTTATCATTTCAGCTGCCATATAGAATATAAATATTAAGTTCCTGACCATTACAAAAGTACTTTATCCATTAACAAATCAATAAACAGTATGACCAGCAAAAATAATTTAATGAACCATTCTTGTAAAACTTAAGGGGAATCAAGAAACATAACATTAATCACCTAGAACAACAAGAGTAGCCCTGCTTTTGTTTCGATCCATCGGTACCATCGTTGACCAGGTTGACTCTGTTGACAGATAATTCGGCTTTATAAGAATC</gDNA_template>
            <first_frame> G  K  I  N  I  Y  H  F  S  C  H  I  E  Y  K  Y  *  V  P  D  H  Y  K  S  T  L  S  I  N  K  S  I  N  S  M  T  S  K  N  N  L  M  N  H  S  C  K  T  *  G  E  S  R  N  I  T  L  I  T  *  N  N  K  S  S  P  A  F  V  S  I  H  R  Y  H  R  *  P  G  *  L  C  *  Q  I  I  R  L  Y  K  N  </first_frame>
            <second_frame>  G  K  *  T  F  I  I  S  A  A  I  *  N  I  N  I  K  F  L  T  I  T  K  V  L  Y  P  L  T  N  Q  *  T  V  *  P  A  K  I  I  *  *  T  I  L  V  K  L  K  G  N  Q  E  T  *  H  *  S  P  R  T  T  R  V  A  L  L  L  F  R  S  I  G  T  I  V  D  Q  V  D  S  V  D  R  *  F  G  F  I  R  I </second_frame>
            <third_frame>   E  N  K  H  L  S  F  Q  L  P  Y  R  I  *  I  L  S  S  *  P  L  Q  K  Y  F  I  H  *  Q  I  N  K  Q  Y  D  Q  Q  K  *  F  N  E  P  F  L  *  N  L  R  G  I  K  K  H  N  I  N  H  L  E  Q  Q  E  *  P  C  F  C  F  D  P  S  V  P  S  L  T  R  L  T  L  L  T  D  N  S  A  L  *  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0059I05.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="58378" PGL_stop="46165"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58378" e_stop="58287"/>
            <exon e_start="58108" e_stop="58031"/>
            <exon e_start="57016" e_stop="56900"/>
            <exon e_start="56386" e_stop="56272"/>
            <exon e_start="55601" e_stop="55496"/>
            <exon e_start="55413" e_stop="55397"/>
            <exon e_start="55322" e_stop="55296"/>
            <exon e_start="55122" e_stop="55039"/>
            <exon e_start="54965" e_stop="54907"/>
            <exon e_start="53153" e_stop="53020"/>
            <exon e_start="52930" e_stop="52887"/>
            <exon e_start="49918" e_stop="49842"/>
            <exon e_start="48473" e_stop="48326"/>
            <exon e_start="47838" e_stop="47777"/>
            <exon e_start="47191" e_stop="47131"/>
            <exon e_start="46389" e_stop="46297"/>
            <exon e_start="46204" e_stop="46165"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.865" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.424" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.954" acc_prob="0.806" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.612" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.831" acc_prob="0.739" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.709" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="58378" e_stop="58287" e_length="92"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.958">
            <gDNA_intron_boundary i_start="58286" i_stop="58109" i_length="178"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="58108" e_stop="58031" e_length="78"/>
          </exon>
          <intron i_serial="2" don_prob="0.960" acc_prob="1.000">
            <gDNA_intron_boundary i_start="58030" i_stop="57017" i_length="1014"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="57016" e_stop="56900" e_length="117"/>
          </exon>
          <intron i_serial="3" don_prob="0.865" acc_prob="0.998">
            <gDNA_intron_boundary i_start="56899" i_stop="56387" i_length="513"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="56386" e_stop="56272" e_length="115"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="56271" i_stop="55602" i_length="670"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="55601" e_stop="55496" e_length="106"/>
          </exon>
          <intron i_serial="5" don_prob="0.994" acc_prob="0.424">
            <gDNA_intron_boundary i_start="55495" i_stop="55414" i_length="82"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="55413" e_stop="55397" e_length="17"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="55396" i_stop="55323" i_length="74"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="55322" e_stop="55296" e_length="27"/>
          </exon>
          <intron i_serial="7" don_prob="0.985" acc_prob="0.998">
            <gDNA_intron_boundary i_start="55295" i_stop="55123" i_length="173"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="55122" e_stop="55039" e_length="84"/>
          </exon>
          <intron i_serial="8" don_prob="0.965" acc_prob="0.999">
            <gDNA_intron_boundary i_start="55038" i_stop="54966" i_length="73"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="54965" e_stop="54907" e_length="59"/>
          </exon>
          <intron i_serial="9" don_prob="0.900" acc_prob="1.000">
            <gDNA_intron_boundary i_start="54906" i_stop="53154" i_length="1753"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="53153" e_stop="53020" e_length="134"/>
          </exon>
          <intron i_serial="10" don_prob="0.954" acc_prob="0.806">
            <gDNA_intron_boundary i_start="53019" i_stop="52931" i_length="89"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="52930" e_stop="52887" e_length="44"/>
          </exon>
          <intron i_serial="11" don_prob="0.994" acc_prob="0.997">
            <gDNA_intron_boundary i_start="52886" i_stop="49919" i_length="2968"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="49918" e_stop="49842" e_length="77"/>
          </exon>
          <intron i_serial="12" don_prob="0.612" acc_prob="0.993">
            <gDNA_intron_boundary i_start="49841" i_stop="48474" i_length="1368"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="48473" e_stop="48326" e_length="148"/>
          </exon>
          <intron i_serial="13" don_prob="0.990" acc_prob="0.995">
            <gDNA_intron_boundary i_start="48325" i_stop="47839" i_length="487"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="47838" e_stop="47777" e_length="62"/>
          </exon>
          <intron i_serial="14" don_prob="0.831" acc_prob="0.739">
            <gDNA_intron_boundary i_start="47776" i_stop="47192" i_length="585"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="47191" e_stop="47131" e_length="61"/>
          </exon>
          <intron i_serial="15" don_prob="0.991" acc_prob="1.000">
            <gDNA_intron_boundary i_start="47130" i_stop="46390" i_length="741"/>
          </intron>
          <exon e_serial="16" e_score="1.000">
            <gDNA_exon_boundary e_start="46389" e_stop="46297" e_length="93"/>
          </exon>
          <intron i_serial="16" don_prob="0.709" acc_prob="0.998">
            <gDNA_intron_boundary i_start="46296" i_stop="46205" i_length="92"/>
          </intron>
          <exon e_serial="17" e_score="1.000">
            <gDNA_exon_boundary e_start="46204" e_stop="46165" e_length="40"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58378" stop="58287"/>
              <exon start="58108" stop="58031"/>
              <exon start="57016" stop="56900"/>
              <exon start="56386" stop="56272"/>
              <exon start="55601" stop="55496"/>
              <exon start="55413" stop="55397"/>
              <exon start="55322" stop="55296"/>
              <exon start="55122" stop="55039"/>
              <exon start="54965" stop="54907"/>
              <exon start="53153" stop="53020"/>
              <exon start="52930" stop="52887"/>
              <exon start="49918" stop="49842"/>
              <exon start="48473" stop="48326"/>
              <exon start="47838" stop="47777"/>
              <exon start="47191" stop="47131"/>
              <exon start="46389" stop="46297"/>
              <exon start="46204" stop="46165"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At1g16970" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTTCAATAAAATCTTCGATATGTCAATGGACCTCGACCCAGATGAAGTCTTCCGTGATGATGAAGATGACCCTGAAAATGAATTCTTCAAG : GAAAGAGATAATACTAAGGAGTTCTTGGTATATCTTGTGGATGCTTCACCTAAAATGTTTTCCTCTACTTGCCCAACG : GATGATGAAAAGATTGCAACTCATTTTCAAGTTGCCGTCAGCTCAATTGCACAGTCTCTCAGAACTCAGATTATTAATAGGTCTTATGATGAAGTTTCTATATGCTTCTTTAACACT : CGGGGAAAAAAGAACTTGCAGGACCTAAGTGGCGTTTATGTATTTAATGTCCGAGAAAGAGAGGATCTGGACAGACCAACAGCTAGGCTAATTAAAGAATTTGATCAAATAGAAG : AAAGATTTGAAAAAGAAATAGGAAGTAAGTACGGCATTGTGCCTGGCTCTCGTGACAATTCTCTTTACAATGCTCTTTGGGTTGCACAAGCCCTTCTCCGTAAAGG : ATCTGCAAAAACTGCTG : ATGAGGACAACGATGCAGCGTGCCAAA : GATGCTCAAGATCTTGGTATTACAATTGAGCTTCTTCCACTAAGCCGGCCAGATGATGAGTTCAACGTTTCCCTTTTTTATGCT : GATTTACTTGGTCTGGAGGGTGATGACCTTGCTCAGTTCAAAGCTCTGATAGGAGAAAG : GTTTGAAGATCTGAACGACCAGCTTAGGAAACGCATGTTTAAGAAGCGCAGAGTTCGAAGACTTCGACTTGTAATTTTTAATGGATTATCTATCGAACTTAACACCTATGCTTTGATCCGTCCAACTAATCCAG : GGACAATTACTTGGCTTGATTCGATGACTAATCTTCCTTTGAAG : ACTGAGAGAACCTTCATATGTGCTGATACTGGTGCTATAGTTCAGGAGCCTCTAAAACGCTTTCAGTCTTACAAAAA : TGAGAATGTCATCTTTTCTGCGGATGAGCTTTCAGAAGTCAAAAGAGTTTCAACTGGACATCTTCGTCTGTTGGGCTTCAAGCCTTTGAGCTGCTTAAAAGACTATCATAACCTGAAGCCAGCAACTTTTGTCTTTCCCAGTGATGAG : GAAGTGGTTGGAAGCACTTGTCTTTTCGTTGCTCTCCAAAGATCAATGTTGCGGCTTAAGCG : TTTTGCAGTTGCTTTCTATGGGAATTTAAGTCATCCTCAATTGGTTGCTCTTGTTGCACAA : GATGAAGTAATGACTCCTAGTGGTCAAGTCGAGCCACCAGGGATGCATCTGATTTATCTTCCATATTCTGATGATATCAGACATGTTGAAGAG : CTTCATACTGATCCTAATTCCGTGCCTCATGCCACTGATG</gDNA_template>
            <first_frame> C  S  I  K  S  S  I  C  Q  W  T  S  T  Q  M  K  S  S  V  M  M  K  M  T  L  K  M  N  S  S  R :   K  E  I  I  L  R  S  S  W  Y  I  L  W  M  L  H  L  K  C  F  P  L  L  A  Q  R :   M  M  K  R  L  Q  L  I  F  K  L  P  S  A  Q  L  H  S  L  S  E  L  R  L  L  I  G  L  M  M  K  F  L  Y  A  S  L  T  L :   G  E  K  R  T  C  R  T  *  V  A  F  M  Y  L  M  S  E  K  E  R  I  W  T  D  Q  Q  L  G  *  L  K  N  L  I  K  *  K  :  K  D  L  K  K  K  *  E  V  S  T  A  L  C  L  A  L  V  T  I  L  F  T  M  L  F  G  L  H  K  P  F  S  V  K   : D  L  Q  K  L  L  :  M  R  T  T  M  Q  R  A  K  :  D  A  Q  D  L  G  I  T  I  E  L  L  P  L  S  R  P  D  D  E  F  N  V  S  L  F  Y  A  :  D  L  L  G  L  E  G  D  D  L  A  Q  F  K  A  L  I  G  E  R :   F  E  D  L  N  D  Q  L  R  K  R  M  F  K  K  R  R  V  R  R  L  R  L  V  I  F  N  G  L  S  I  E  L  N  T  Y  A  L  I  R  P  T  N  P   : G  T  I  T  W  L  D  S  M  T  N  L  P  L  K  :  T  E  R  T  F  I  C  A  D  T  G  A  I  V  Q  E  P  L  K  R  F  Q  S  Y  K  N :   E  N  V  I  F  S  A  D  E  L  S  E  V  K  R  V  S  T  G  H  L  R  L  L  G  F  K  P  L  S  C  L  K  D  Y  H  N  L  K  P  A  T  F  V  F  P  S  D  E  :  E  V  V  G  S  T  C  L  F  V  A  L  Q  R  S  M  L  R  L  K  R :   F  A  V  A  F  Y  G  N  L  S  H  P  Q  L  V  A  L  V  A  Q  :  D  E  V  M  T  P  S  G  Q  V  E  P  P  G  M  H  L  I  Y  L  P  Y  S  D  D  I  R  H  V  E  E  :  L  H  T  D  P  N  S  V  P  H  A  T  D  </first_frame>
            <second_frame>  V  Q  *  N  L  R  Y  V  N  G  P  R  P  R  *  S  L  P  *  *  *  R  *  P  *  K  *  I  L  Q   : G  K  R  *  Y  *  G  V  L  G  I  S  C  G  C  F  T  *  N  V  F  L  Y  L  P  N   : G  *  *  K  D  C  N  S  F  S  S  C  R  Q  L  N  C  T  V  S  Q  N  S  D  Y  *  *  V  L  *  *  S  F  Y  M  L  L  *  H   : S  G  K  K  E  L  A  G  P  K  W  R  L  C  I  *  C  P  R  K  R  G  S  G  Q  T  N  S  *  A  N  *  R  I  *  S  N  R  R :   K  I  *  K  R  N  R  K  *  V  R  H  C  A  W  L  S  *  Q  F  S  L  Q  C  S  L  G  C  T  S  P  S  P  *  R  :  I  C  K  N  C  * :   *  G  Q  R  C  S  V  P  K :   M  L  K  I  L  V  L  Q  L  S  F  F  H  *  A  G  Q  M  M  S  S  T  F  P  F  F  M  L :   I  Y  L  V  W  R  V  M  T  L  L  S  S  K  L  *  *  E  K   : G  L  K  I  *  T  T  S  L  G  N  A  C  L  R  S  A  E  F  E  D  F  D  L  *  F  L  M  D  Y  L  S  N  L  T  P  M  L  *  S  V  Q  L  I  Q  :  G  Q  L  L  G  L  I  R  *  L  I  F  L  *  R :   L  R  E  P  S  Y  V  L  I  L  V  L  *  F  R  S  L  *  N  A  F  S  L  T  K   : M  R  M  S  S  F  L  R  M  S  F  Q  K  S  K  E  F  Q  L  D  I  F  V  C  W  A  S  S  L  *  A  A  *  K  T  I  I  T  *  S  Q  Q  L  L  S  F  P  V  M  R :   K  W  L  E  A  L  V  F  S  L  L  S  K  D  Q  C  C  G  L  S   : V  L  Q  L  L  S  M  G  I  *  V  I  L  N  W  L  L  L  L  H  K :   M  K  *  *  L  L  V  V  K  S  S  H  Q  G  C  I  *  F  I  F  H  I  L  M  I  S  D  M  L  K  S :   F  I  L  I  L  I  P  C  L  M  P  L  M </second_frame>
            <third_frame>   F  N  K  I  F  D  M  S  M  D  L  D  P  D  E  V  F  R  D  D  E  D  D  P  E  N  E  F  F  K  :  E  R  D  N  T  K  E  F  L  V  Y  L  V  D  A  S  P  K  M  F  S  S  T  C  P  T  :  D  D  E  K  I  A  T  H  F  Q  V  A  V  S  S  I  A  Q  S  L  R  T  Q  I  I  N  R  S  Y  D  E  V  S  I  C  F  F  N  T  :  R  G  K  K  N  L  Q  D  L  S  G  V  Y  V  F  N  V  R  E  R  E  D  L  D  R  P  T  A  R  L  I  K  E  F  D  Q  I  E   : E  R  F  E  K  E  I  G  S  K  Y  G  I  V  P  G  S  R  D  N  S  L  Y  N  A  L  W  V  A  Q  A  L  L  R  K  G :   S  A  K  T  A   : D  E  D  N  D  A  A  C  Q   : R  C  S  R  S  W  Y  Y  N  *  A  S  S  T  K  P  A  R  *  *  V  Q  R  F  P  F  L  C   : *  F  T  W  S  G  G  *  *  P  C  S  V  Q  S  S  D  R  R  K  :  V  *  R  S  E  R  P  A  *  E  T  H  V  *  E  A  Q  S  S  K  T  S  T  C  N  F  *  W  I  I  Y  R  T  *  H  L  C  F  D  P  S  N  *  S  R :   D  N  Y  L  A  *  F  D  D  *  S  S  F  E   : D  *  E  N  L  H  M  C  *  Y  W  C  Y  S  S  G  A  S  K  T  L  S  V  L  Q  K  :  *  E  C  H  L  F  C  G  *  A  F  R  S  Q  K  S  F  N  W  T  S  S  S  V  G  L  Q  A  F  E  L  L  K  R  L  S  *  P  E  A  S  N  F  C  L  S  Q  *  *   : G  S  G  W  K  H  L  S  F  R  C  S  P  K  I  N  V  A  A  *  A  :  F  C  S  C  F  L  W  E  F  K  S  S  S  I  G  C  S  C  C  T   : R  *  S  N  D  S  *  W  S  S  R  A  T  R  D  A  S  D  L  S  S  I  F  *  *  Y  Q  T  C  *  R   : A  S  Y  *  S  *  F  R  A  S  C  H  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0059I05.3" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55580" stop="55496"/>
                    <exon start="55413" stop="55397"/>
                    <exon start="55322" stop="55296"/>
                    <exon start="55122" stop="55039"/>
                    <exon start="54965" stop="54907"/>
                    <exon start="53153" stop="53020"/>
                    <exon start="52930" stop="52887"/>
                    <exon start="49918" stop="49842"/>
                    <exon start="48473" stop="48326"/>
                    <exon start="47838" stop="47777"/>
                    <exon start="47191" stop="47131"/>
                    <exon start="46389" stop="46297"/>
                    <exon start="46204" stop="46166"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>930</number_coding_nucleotides>
                  <number_encoded_amino_acids>310</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EVSTALCLALVTILFTMLFGLHKPFSVKDLQKLLMRTTMQRAKDAQDLGITIELLPLSRPDDEFNVSLFYADLLGLEGDDLAQFKALIGERFEDLNDQLRKRMFKKRRVRRLRLVIFNGLSIELNTYALIRPTNPGTITWLDSMTNLPLKTERTFICADTGAIVQEPLKRFQSYKNENVIFSADELSEVKRVSTGHLRLLGFKPLSCLKDYHNLKPATFVFPSDEEVVGSTCLFVALQRSMLRLKRFAVAFYGNLSHPQLVALVAQDEVMTPSGQVEPPGMHLIYLPYSDDIRHVEELHTDPNSVPHATD</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0059I05.3" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58378" stop="58287"/>
                    <exon start="58108" stop="58031"/>
                    <exon start="57016" stop="56900"/>
                    <exon start="56386" stop="56359"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>312</number_coding_nucleotides>
                  <number_encoded_amino_acids>104</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CSIKSSICQWTSTQMKSSVMMKMTLKMNSSRKEIILRSSWYILWMLHLKCFPLLAQRMMKRLQLIFKLPSAQLHSLSELRLLIGLMMKFLYASLTLGEKRTCRT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="121499" PGL_stop="123558"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="121499" e_stop="121510"/>
            <exon e_start="121599" e_stop="121702"/>
            <exon e_start="122261" e_stop="122327"/>
            <exon e_start="123523" e_stop="123558"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.838" acc_prob="0.997" e_score="0.750"/>
          <exon-intron don_prob="0.962" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.990" e_score="0.985"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.750">
            <gDNA_exon_boundary e_start="121499" e_stop="121510" e_length="12"/>
          </exon>
          <intron i_serial="1" don_prob="0.838" acc_prob="0.997">
            <gDNA_intron_boundary i_start="121511" i_stop="121598" i_length="88"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="121599" e_stop="121702" e_length="104"/>
          </exon>
          <intron i_serial="2" don_prob="0.962" acc_prob="0.997">
            <gDNA_intron_boundary i_start="121703" i_stop="122260" i_length="558"/>
          </intron>
          <exon e_serial="3" e_score="0.985">
            <gDNA_exon_boundary e_start="122261" e_stop="122327" e_length="67"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.990">
            <gDNA_intron_boundary i_start="122328" i_stop="123522" i_length="1195"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="123523" e_stop="123558" e_length="36"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121499" stop="121510"/>
              <exon start="121599" stop="121702"/>
              <exon start="122261" stop="122327"/>
              <exon start="123523" stop="123558"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="T0985" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTCCTTTTCCG : GTTCGCGAGGAAGATGAGGAGATTGAAGCCGAGGGTGCTAATTATCAACTTGAAATGATGCGATGCCTGAGGGAGGTTAATGTTGACAACAACACCGTTGGTTG : GTATCAATCAACTTTGTTTGGTTCATATCAGACAGTGGAACTGATAGAGACCTTCATGAATTACCAG : GAGAATATAAAACGTTGTGTCTGCATAATCTATGAT</gDNA_template>
            <first_frame> F  P  F  P  :  V  R  E  E  D  E  E  I  E  A  E  G  A  N  Y  Q  L  E  M  M  R  C  L  R  E  V  N  V  D  N  N  T  V  G  W :   Y  Q  S  T  L  F  G  S  Y  Q  T  V  E  L  I  E  T  F  M  N  Y  Q  :  E  N  I  K  R  C  V  C  I  I  Y  D </first_frame>
            <second_frame>  F  L  F  R :   F  A  R  K  M  R  R  L  K  P  R  V  L  I  I  N  L  K  *  C  D  A  *  G  R  L  M  L  T  T  T  P  L  V   : G  I  N  Q  L  C  L  V  H  I  R  Q  W  N  *  *  R  P  S  *  I  T  R :   R  I  *  N  V  V  S  A  *  S  M   </second_frame>
            <third_frame>   S  F  S   : G  S  R  G  R  *  G  D  *  S  R  G  C  *  L  S  T  *  N  D  A  M  P  E  G  G  *  C  *  Q  Q  H  R  W  L  :  V  S  I  N  F  V  W  F  I  S  D  S  G  T  D  R  D  L  H  E  L  P   : G  E  Y  K  T  L  C  L  H  N  L  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0059I05.3" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="121499" stop="121510"/>
                    <exon start="121599" stop="121702"/>
                    <exon start="122261" stop="122327"/>
                    <exon start="123523" stop="123558"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FPFPVREEDEEIEAEGANYQLEMMRCLREVNVDNNTVGWYQSTLFGSYQTVELIETFMNYQENIKRCVCIIYD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 8 chains have been computed
$ 
$ memory statistics:
$ 8768 bytes spliced alignments in total
$ 4 spliced alignments have been stored
$ 2192 bytes was the average size of a spliced alignment
$ 9664 bytes predicted gene locations in total
$ 4 predicted gene locations have been stored
$ 2416 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 8 backtrace matrices have been allocated
$ 
$ date finished: 2009-11-24 17:17:29
-->
