<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-11-24 17:14:22"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E466732" ref_strand="+" ref_description="SGN-E466732 [cPRO-25-N4]">
      <seq>cgccccgaaaccctaatgatgggtaaagttaataaagagaggttggctgagtacctcggtgaactgcagagaaaggagaacacaaatgacagatatgttgcagctctaaagggtgaaacgttgacaaggaaaccttaccaaagaattcaaccagtcccaaatccaagtgatattgaagcaaagaaggaacagaagtagatcgcggcttagccagttttgttgctttagtttggtacttctatctttccaagtggataaagctttggaatggagtcatggacacaactggagttattgctaaatatcttgaaacttgtacaagtataatttgaagattgacctttgttgaatgagtgaaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="+" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="1" stop="760"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113" g_stop="460" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="362" r_length="347" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="+" ref_id="SGN-E466732" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>348</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E466732" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113" e_stop="460"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATGGGTAAAGTTAATAAAGAGAGGTTGGCTGAGTACCTTGGCGAACTGCAGAGAAAGGAGAACACAAATGACAGATATGTTGCAGCTCTAAAGGGCGAAACGTTGACAAGGAAACCTTACCAAAGAATTCAACCAGTCCCAAATCCAAGTGATATTGAAGCAAAGAAGGAACAGAAGTAGATCGTGGCTTAACCGGTTTTGTTGATTTAGTTTGGTACTTCTACTTTTTCCAA-TGGATAAAGCTTTGGAATGGAATCATGGACACAACTGGAGTTATTGCTATATATCTTTGAAACTTGTACAAGTAAAATTTGAAGAACGACTGTTGTCGAATGAGTGAAATCT</genome_strand>
        <mrna_strand>ATGATGGGTAAAGTTAATAAAGAGAGGTTGGCTGAGTACCTCGGTGAACTGCAGAGAAAGGAGAACACAAATGACAGATATGTTGCAGCTCTAAAGGGTGAAACGTTGACAAGGAAACCTTACCAAAGAATTCAACCAGTCCCAAATCCAAGTGATATTGAAGCAAAGAAGGAACAGAAGTAGATCGCGGCTTAGCCAGTTTTGTTGCTTTAGTTTGGTACTTCTA-TCTTTCCAAGTGGATAAAGCTTTGGAATGGAGTCATGGACACAACTGGAGTTATTGCTAAATATC-TTGAAACTTGTACAAGTATAATTTGAAGATTGACCTTTGTTGAATGAGTGAAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E711778" ref_strand="+" ref_description="SGN-E711778 [FB02DH03]">
      <seq>cccgttaacttggctcaagagtttctgaaacagaaacttgatgccaatgatgagagctatgcaaaaccggccatggaaacacacgttgaaggtaaacaggaggtttatgccggttcaggtaatagaggtcttccagacagtggcattctcgtcagtgggtgccaaacagaccaaacatctgcggatgcaacccctgcaggcggagagtcttatggtgctctaagcaacgcaattcaggaaatcctggccgaatcagatggtccagtcaccaatgaggagcttgttagcaaggctaggaaaaagatgcagaaacaaggcttcacacaacgcccaggcctctactgcgatgatcatcacgttgatgctccttttgtttgttgattctactgtgctatgccttctcgagtagctgttgaaatacgactgtgaagtcaacgaggtgttatatagctacatccttttgtgtatttgtgtgattgtttgtgctaatgttggagtagctcttttactctggtgtttcagtagaaccatgctccatcatgtgaatgtgtactatttggctcttttttttttcttttaaatttggtcagagaataaggtattaaagaaccacagttttcggtattgtttaggatatttgaaagttaaatctggagaacttgtttgtatactgaatgagttatattttaatgcaactgaatgtatcatgtgccaacattnnanaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="-" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="1696" stop="382"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1399" g_stop="684" g_length="716"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="716" r_length="716" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="722" polyA_stop="737"/>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="-" ref_id="SGN-E711778" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711778" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1399" e_stop="684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGGTAACTTGGCTCAAGAGTTTCTGAAACAGAAACTTGATGAAAATGATGAGAGCTATGCAAAACCGGCCATGGAAACACACGTTGAAGGTAAACAGGAGGTTTATGCCGGTTCAGGTAATAGAGGTCTTCCAGACAGTGGCATTCTCGTCAGTGGGTGCCAAACAGACCAAACATCTGCGGATGCAACCCCTGCAGGCGGAGAGTCTTATGGTGCTCTAAGCAACGCAATTCAGGAAATCCTGGCCGAATCAGATGGTCCAGTCACCAATGAGGAGCTTGTTAGCAAGGCTAGGAAAAAGATGCAGAAACAAGGCTTCACACAACGCCCAGGCCTCTACTGCGATGATCATCACGTTGATGCTCCTTTTGTTTGTTGATTCTACTGTGCTATGCCTTCTCGAGTAGCTGTTGAAATACGACTGTGAAGTCAACGAGGTGTTATATAGCTACATCCTTTTGTGTATTTGTGTGATTGTTTGTGCTAATGTTGGAGTAGCTCTTTTACTCTGGTGTTTCAGTAGAACCATGCTCCATCATGTGAATGTGTACTATTTGGCTCTTTTTTTTTTCTTTTAAATTTGGTCAGAGAATAAGGTATTAAAGAACCACAGTTTTCGGTATTGTTTAGGATATTTGAAAGTTAAATCTGGAGAACTTGTTTGTATACTGAATGAGTTATATTTTAATGCAACTGAATGTATCATGTGCCAAC</genome_strand>
        <mrna_strand>CCCGTTAACTTGGCTCAAGAGTTTCTGAAACAGAAACTTGATGCCAATGATGAGAGCTATGCAAAACCGGCCATGGAAACACACGTTGAAGGTAAACAGGAGGTTTATGCCGGTTCAGGTAATAGAGGTCTTCCAGACAGTGGCATTCTCGTCAGTGGGTGCCAAACAGACCAAACATCTGCGGATGCAACCCCTGCAGGCGGAGAGTCTTATGGTGCTCTAAGCAACGCAATTCAGGAAATCCTGGCCGAATCAGATGGTCCAGTCACCAATGAGGAGCTTGTTAGCAAGGCTAGGAAAAAGATGCAGAAACAAGGCTTCACACAACGCCCAGGCCTCTACTGCGATGATCATCACGTTGATGCTCCTTTTGTTTGTTGATTCTACTGTGCTATGCCTTCTCGAGTAGCTGTTGAAATACGACTGTGAAGTCAACGAGGTGTTATATAGCTACATCCTTTTGTGTATTTGTGTGATTGTTTGTGCTAATGTTGGAGTAGCTCTTTTACTCTGGTGTTTCAGTAGAACCATGCTCCATCATGTGAATGTGTACTATTTGGCTCTTTTTTTTTTCTTTTAAATTTGGTCAGAGAATAAGGTATTAAAGAACCACAGTTTTCGGTATTGTTTAGGATATTTGAAAGTTAAATCTGGAGAACTTGTTTGTATACTGAATGAGTTATATTTTAATGCAACTGAATGTATCATGTGCCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E568100" ref_strand="+" ref_description="SGN-E568100 [12329]">
      <seq>tttcttttaacgaaatttatgcattcagttgcattaaaatataacacattcagtatacaagacaagttctccagattaaactttcaaatatccaaaacaataccgaaaactgtggttctttaataccttattctctgaccaaatttaaaagatataaaaaaacagagccaaatagtacacattcacatgatggagaatggttcttctgtaacaccagagtagaagagctactccaacataagcacaaacaatcacacaaatacacaaaaggatgtagttatataacacctcgttgacttcacagtcgtatttcaacagctactcgagaaggcatagcacagcagaatcaacaaacaaaaggagcatcaacatgatgatcatcgcagtaaggcctggacgttgtgtgaagccttgtttctgcatctttttcctagccttgctaacaagctcctcattggtgactggaccatctgattcagctaggatttcctgaattgcgttgcttagagcaccataagaatctccgcctgcaggggtggccatctgcagatgtttgggctgtttggaaccactgacggagaatgccactgtctggaagactctattgcttgaaccggatacacttcctgcttaccttcaacgttgtgttccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="+" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="379" stop="1627"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="699" g_stop="1327" g_length="629"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="653" r_length="631" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="+" ref_id="SGN-E568100" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E568100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="699" e_stop="1327"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCAGTTGCATTAAAATATAACTCATTCAGTATACAA-ACAAGTTCTCCAGATTTAACTTTCAAATATCCTAAACAATACCGAAAACTGTGGTTCTTTAATACCTTATTCTCTGACCAAATTTAAAAGA-A-AAAAAAA-AGAGCCAAATAGTACACATTCACATGATGGAGCATGGTTCTACTGAAACACCAGAGTAAAAGAGCTACTCCAACATTAGCACAAACAATCACACAAATACACAAAAGGATGTAGCTATATAACACCTCGTTGACTTCACAGTCGTATTTCAACAGCTACTCGAGAAGGCATAGCACAGTAGAATCAACAAACAAAAGGAGCATCAACGTGATGATCATCGCAGTAGAGGCCTGGGCGTTGTGTGAAGCCTTGTTTCTGCATCTTTTTCCTAGCCTTGCTAACAAGCTCCTCATTGGTGACTGGACCATCTGATTCGGCCAGGATTTCCTGAATTGCGTTGCTTAGAGCACCATAAGACTCTCCGCCTGCAGGGGTTG-CATCCGCAGATGTTTGGTCTGTTTGGCACCCACTGAC-GAGAATGCCACTGTCTGGAAGACCTCTATTACCTGAACCGGCATAAACCTCCTGTTTACCTTCAACGTGTGTTTCCAT</genome_strand>
        <mrna_strand>ATTCAGTTGCATTAAAATATAACACATTCAGTATACAAGACAAGTTCTCCAGATTAAACTTTCAAATATCCAAAACAATACCGAAAACTGTGGTTCTTTAATACCTTATTCTCTGACCAAATTTAAAAGATATAAAAAAACAGAGCCAAATAGTACACATTCACATGATGGAGAATGGTTCTTCTGTAACACCAGAGTAGAAGAGCTACTCCAACATAAGCACAAACAATCACACAAATACACAAAAGGATGTAGTTATATAACACCTCGTTGACTTCACAGTCGTATTTCAACAGCTACTCGAGAAGGCATAGCACAGCAGAATCAACAAACAAAAGGAGCATCAACATGATGATCATCGCAGTA-AGGCCTGGACGTTGTGTGAAGCCTTGTTTCTGCATCTTTTTCCTAGCCTTGCTAACAAGCTCCTCATTGGTGACTGGACCATCTGATTCAGCTAGGATTTCCTGAATTGCGTTGCTTAGAGCACCATAAGAATCTCCGCCTGCAGGGGTGGCCATCTGCAGATGTTTGGGCTGTTTGG-AACCACTGACGGAGAATGCCACTGTCTGGAAGA-CTCTATTGCTTGAACCGG-ATACACTTCCTGCTTACCTTCAACGTTGTGTTCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E580406" ref_strand="-" ref_description="SGN-E580406 [5649]">
      <seq>tatgccttctcgagtacctgttgaaatacgactgtgaagtcaacgaggtgttatagaactacatccttttgcgtatttgtgtgattgtttgtgcttatgttggagtagctcttctactctggtgttgcagaagaaccattctccatgcatgtgaatgtgtactatttggctctgtttttttttatcttttaaatttggtcagagaataaggtattaaagaaccacagttttcggtattgttttggatatttgaaagtttaatcctggagaacttgtcttgtatactgaatgtgttatattttaatgcaactgaatgcataaaaaaaaaaaaaaaaaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="-" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="1307" stop="393"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1007" g_stop="699" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="315" r_length="315" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="318" polyA_stop="337"/>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="-" ref_id="SGN-E580406" ref_strand="-">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>309</cumulative_length_of_scored_exons>
        <coverage percentage="0.909" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E580406" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="1007" e_stop="699"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGCCTTCTCGAGTAGCTGTTGAAATACGACTGTGAAGTCAACGAGGTGTTATATAGCTACATCCTTTTGTGTATTTGTGTGATTGTTTGTGCTAATGTTGGAGTAGCTCTTTTACTCTGGTGTTTCAGTAGAACCATGCTCCAT-CATGTGAATGTGTACTATTTGGCTC--TTTTTTTTT-TCTTTTAAATTTGGTCAGAGAATAAGGTATTAAAGAACCACAGTTTTCGGTATTGTTTAGGATATTTGAAAGTTAAAT-CTGGAGAACTTGT-TTGTATACTGAATGAGTTATATTTTAATGCAACTGAAT</genome_strand>
        <mrna_strand>TATGCCTTCTCGAGTACCTGTTGAAATACGACTGTGAAGTCAACGAGGTGTTATAGAACTACATCCTTTTGCGTATTTGTGTGATTGTTTGTGCTTATGTTGGAGTAGCTCTTCTACTCTGGTGTTGCAGAAGAACCATTCTCCATGCATGTGAATGTGTACTATTTGGCTCTGTTTTTTTTTATCTTTTAAATTTGGTCAGAGAATAAGGTATTAAAGAACCACAGTTTTCGGTATTGTTTTGGATATTTGAAAGTTTAATCCTGGAGAACTTGTCTTGTATACTGAATGTGTTATATTTTAATGCAACTGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E273465" ref_strand="-" ref_description="SGN-E273465 [cLEN-3-L23]">
      <seq>tcagtgggtgccaaacagaccaaacatctgcggatgcaacccctgcaggcggagagtcttatggtgctctaagcaacgcaattcaggaaatcctggccgaatcagatggtccagtcaccaatgaggagcttgttagcaaggctaggaaaaagatgcagaaacaaggcttcacacaacgcccaggcctctactgcgatgatcatcacgttgatgctccttttgtttgttgattctactgtgctatgccttctcgagtagctgttgaaatacgactgtgaagtcaacgaggtgttatatagctacatccttttgtgtatttgtgtgattgtttgtgctaatgttggagtagctcttttactctggtgtttcagtagaaccatgctccatcatgtgaatgtgtactatttggctcttttttttttcttttaaatttggtcagagaataaggtattaaagaaccacagttttcggtattgtttaggatatttgaaagttaaatctggagaacttgtttgtatactgaatgagttatattttaatgcaaaaaaaaaaaaaaaaaactcgagactagttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="-" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="1548" stop="405"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1248" g_stop="705" g_length="544"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="544" r_length="544" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="545" polyA_stop="561"/>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="-" ref_id="SGN-E273465" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273465" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="1248" e_stop="705"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGTGGGTGCCAAACAGACCAAACATCTGCGGATGCAACCCCTGCAGGCGGAGAGTCTTATGGTGCTCTAAGCAACGCAATTCAGGAAATCCTGGCCGAATCAGATGGTCCAGTCACCAATGAGGAGCTTGTTAGCAAGGCTAGGAAAAAGATGCAGAAACAAGGCTTCACACAACGCCCAGGCCTCTACTGCGATGATCATCACGTTGATGCTCCTTTTGTTTGTTGATTCTACTGTGCTATGCCTTCTCGAGTAGCTGTTGAAATACGACTGTGAAGTCAACGAGGTGTTATATAGCTACATCCTTTTGTGTATTTGTGTGATTGTTTGTGCTAATGTTGGAGTAGCTCTTTTACTCTGGTGTTTCAGTAGAACCATGCTCCATCATGTGAATGTGTACTATTTGGCTCTTTTTTTTTTCTTTTAAATTTGGTCAGAGAATAAGGTATTAAAGAACCACAGTTTTCGGTATTGTTTAGGATATTTGAAAGTTAAATCTGGAGAACTTGTTTGTATACTGAATGAGTTATATTTTAATGCAA</genome_strand>
        <mrna_strand>TCAGTGGGTGCCAAACAGACCAAACATCTGCGGATGCAACCCCTGCAGGCGGAGAGTCTTATGGTGCTCTAAGCAACGCAATTCAGGAAATCCTGGCCGAATCAGATGGTCCAGTCACCAATGAGGAGCTTGTTAGCAAGGCTAGGAAAAAGATGCAGAAACAAGGCTTCACACAACGCCCAGGCCTCTACTGCGATGATCATCACGTTGATGCTCCTTTTGTTTGTTGATTCTACTGTGCTATGCCTTCTCGAGTAGCTGTTGAAATACGACTGTGAAGTCAACGAGGTGTTATATAGCTACATCCTTTTGTGTATTTGTGTGATTGTTTGTGCTAATGTTGGAGTAGCTCTTTTACTCTGGTGTTTCAGTAGAACCATGCTCCATCATGTGAATGTGTACTATTTGGCTCTTTTTTTTTTCTTTTAAATTTGGTCAGAGAATAAGGTATTAAAGAACCACAGTTTTCGGTATTGTTTAGGATATTTGAAAGTTAAATCTGGAGAACTTGTTTGTATACTGAATGAGTTATATTTTAATGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E567357" ref_strand="+" ref_description="SGN-E567357 [11469]">
      <seq>cggccatggaaacacacgttgaaggtaaacaggaggtttatgccggttcaggcaatagaggtcttccagnagagtggcattctcgtcagtgggtgccaaacagaccaaacatctgcagatgccacccctgcaggcggagattcttatggtgctctaagcaacgcaattcaggaaatcctagctgaatcagatggtccagtcaccaatgaggaacttgttagcaaggctaggaaaaagatgcagaaacaaggcttcacacaacgtccaggcctctactgcgatgatcatcatgttgatgctccttttgtttgttgattctgctgtgctatgccttctcgagtagctgttgaaatacgactgtgaagtcaacgaggtgttatataactacatccttttgtgtatttgtgtgattgtttgtgcttatgttggagtagctcttctactctggtgttgcagaagaaccattctccatcatgtgaatgtgtactatttggctctggtatgttttatcttttaaaatttggtcagagaataaggtattaaagaaccacagtttttcggtattgtttggatatctgaaaagtctaatctggagaacttgtcttgtatactggaatgtgttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="-" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="1632" stop="419"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1332" g_stop="718" g_length="615"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="623" r_length="623" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="-" ref_id="SGN-E567357" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E567357" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1332" e_stop="718"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCCATGGAAACACACGTTGAAGGTAAACAGGAGGTTTATGCCGGTTCAGGTAATAGAGGTCTTCCAG-ACAGTGGCATTCTCGTCAGTGGGTGCCAAACAGACCAAACATCTGCGGATGCAACCCCTGCAGGCGGAGAGTCTTATGGTGCTCTAAGCAACGCAATTCAGGAAATCCTGGCCGAATCAGATGGTCCAGTCACCAATGAGGAGCTTGTTAGCAAGGCTAGGAAAAAGATGCAGAAACAAGGCTTCACACAACGCCCAGGCCTCTACTGCGATGATCATCACGTTGATGCTCCTTTTGTTTGTTGATTCTACTGTGCTATGCCTTCTCGAGTAGCTGTTGAAATACGACTGTGAAGTCAACGAGGTGTTATATAGCTACATCCTTTTGTGTATTTGTGTGATTGTTTGTGCTAATGTTGGAGTAGCTCTTTTACTCTGGTGTTTCAGTAGAACCATGCTCCATCATGTGAATGTGTACTATTTGGCTCT--T-TTTTTTTTCTTTT-AAATTTGGTCAGAGAATAAGGTATTAAAGAACCACAG-TTTTCGGTATTGTTTAGGATATTTG-AAAGTTAAATCTGGAGAACTTGT-TTGTATACT-GAATGAGTTA</genome_strand>
        <mrna_strand>CGGCCATGGAAACACACGTTGAAGGTAAACAGGAGGTTTATGCCGGTTCAGGCAATAGAGGTCTTCCAGNAGAGTGGCATTCTCGTCAGTGGGTGCCAAACAGACCAAACATCTGCAGATGCCACCCCTGCAGGCGGAGATTCTTATGGTGCTCTAAGCAACGCAATTCAGGAAATCCTAGCTGAATCAGATGGTCCAGTCACCAATGAGGAACTTGTTAGCAAGGCTAGGAAAAAGATGCAGAAACAAGGCTTCACACAACGTCCAGGCCTCTACTGCGATGATCATCATGTTGATGCTCCTTTTGTTTGTTGATTCTGCTGTGCTATGCCTTCTCGAGTAGCTGTTGAAATACGACTGTGAAGTCAACGAGGTGTTATATAACTACATCCTTTTGTGTATTTGTGTGATTGTTTGTGCTTATGTTGGAGTAGCTCTTCTACTCTGGTGTTGCAGAAGAACCATTCTCCATCATGTGAATGTGTACTATTTGGCTCTGGTATGTTTTATCTTTTAAAATTTGGTCAGAGAATAAGGTATTAAAGAACCACAGTTTTTCGGTATTGTTT-GGATATCTGAAAAGTCTAATCTGGAGAACTTGTCTTGTATACTGGAATGTGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E371712" ref_strand="+" ref_description="SGN-E371712 [TUS-30-C1](-)">
      <seq>aacttgatgaaaatgatgagagctatgcaaaaccggccatggaaacacacgttgaaggtaaacaggaggtttatgccggttcaggtaatagaggtcttccagacagtggcattctcgtcagtgggtgccaaacagaccaaacatctgcggatgcaacccctgcaggcggagagtcttatggtgctctaagcaacacaattcaggaaatcctggccgaatcagatggtccagtcaccatatgaggagcttgttagcaaggctaggaaaaagatgcagaaacaaggcttcacacaacgcccaggcctctactgcaatgatcatcacgttaatgctccttttgtttgttgattctactgtgctatgccttctcgagtagctgttgaaatacgactgtgaagtcaacgaggtgttatatagctacatccttttgtgtatttgtgtgattgtttgtgctaatgttggagtagctcttttactatggtgtttcagtagaaccatgctccatcatgtgaatgtgtactatttggctcttttttttttcttttaaatttggtcaaagaataaggtattaaagaaccacagttttcggtattgtttaggatatttgaaagttaaatctggagaaattgtttgtataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="-" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="1665" stop="430"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1365" g_stop="721" g_length="645"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="646" r_length="646" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="-" ref_id="SGN-E371712" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371712" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1365" e_stop="721"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTGATGAAAATGATGAGAGCTATGCAAAACCGGCCATGGAAACACACGTTGAAGGTAAACAGGAGGTTTATGCCGGTTCAGGTAATAGAGGTCTTCCAGACAGTGGCATTCTCGTCAGTGGGTGCCAAACAGACCAAACATCTGCGGATGCAACCCCTGCAGGCGGAGAGTCTTATGGTGCTCTAAGCAACGCAATTCAGGAAATCCTGGCCGAATCAGATGGTCCAGTCACCA-ATGAGGAGCTTGTTAGCAAGGCTAGGAAAAAGATGCAGAAACAAGGCTTCACACAACGCCCAGGCCTCTACTGCGATGATCATCACGTTGATGCTCCTTTTGTTTGTTGATTCTACTGTGCTATGCCTTCTCGAGTAGCTGTTGAAATACGACTGTGAAGTCAACGAGGTGTTATATAGCTACATCCTTTTGTGTATTTGTGTGATTGTTTGTGCTAATGTTGGAGTAGCTCTTTTACTCTGGTGTTTCAGTAGAACCATGCTCCATCATGTGAATGTGTACTATTTGGCTCTTTTTTTTTTCTTTTAAATTTGGTCAGAGAATAAGGTATTAAAGAACCACAGTTTTCGGTATTGTTTAGGATATTTGAAAGTTAAATCTGGAGAACTTGTTTGTATACTGAATGAG</genome_strand>
        <mrna_strand>AACTTGATGAAAATGATGAGAGCTATGCAAAACCGGCCATGGAAACACACGTTGAAGGTAAACAGGAGGTTTATGCCGGTTCAGGTAATAGAGGTCTTCCAGACAGTGGCATTCTCGTCAGTGGGTGCCAAACAGACCAAACATCTGCGGATGCAACCCCTGCAGGCGGAGAGTCTTATGGTGCTCTAAGCAACACAATTCAGGAAATCCTGGCCGAATCAGATGGTCCAGTCACCATATGAGGAGCTTGTTAGCAAGGCTAGGAAAAAGATGCAGAAACAAGGCTTCACACAACGCCCAGGCCTCTACTGCAATGATCATCACGTTAATGCTCCTTTTGTTTGTTGATTCTACTGTGCTATGCCTTCTCGAGTAGCTGTTGAAATACGACTGTGAAGTCAACGAGGTGTTATATAGCTACATCCTTTTGTGTATTTGTGTGATTGTTTGTGCTAATGTTGGAGTAGCTCTTTTACTATGGTGTTTCAGTAGAACCATGCTCCATCATGTGAATGTGTACTATTTGGCTCTTTTTTTTTTCTTTTAAATTTGGTCAAAGAATAAGGTATTAAAGAACCACAGTTTTCGGTATTGTTTAGGATATTTGAAAGTTAAATCTGGAGAAATTGTTTGTATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E705305" ref_strand="+" ref_description="SGN-E705305 [FA26DA05]">
      <seq>cggtgatcaagttcatgtgaagagcaagtccttgcctctttccactctcatcgagatacttaagcagaaaactggtaaggatgatattgatgttgggaaacttaggccaacactctttgacgtctttggcgaagatgcaagtcctaaggtgaagaaattcatgaaaatcatttttaacaagctacaaaagaataacgagcagggtggaggcggcgggttcatgggtatggttggtaacttggctcaagagtttctgaaacagaaacttgatgaaaatgatgagagctatgcaaaaccggccatggaaacacacgttgaaggtaaacaggaggtttatgccggttcaggtaatagaggtcttccagacagtggcattctcgtcagtgggtgccaaacagaccaaacatctgcggatgcaacccctgcaggcggagagtcttatggtgctctaagcaacgcaattcaggaaatcctggccgaatcagatggtccagtcaccaatgaggagcttgttagcaaggctaggaaaaagatgcagaaacaaggcttcacacaacgcccaggcctctactgcgatgatcatcacgttgatgctccttttgtttgttgattctactgtgctatgccttctcgagtagctgttgaaatacgactgtgaagtcaacgaggtgttatatagctacatccttttgtgtatttgtgtgattgtttgtgctaatgttggagtagctcttttactctggtgtttcagtagaaccatgctccatcatgtgaatgtgtactatttggctcttttttttttcttttaaatttggtcagagaataaggtattaaagaaccacagttttcggtattgtttaggatatttgaaagtaaaatctggagaacttgtttgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="-" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="1928" stop="430"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1628" g_stop="723" g_length="906"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="906" r_length="906" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="-" ref_id="SGN-E705305" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>906</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705305" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1628" e_stop="723"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGTGATCAAGTTCATGTGAAGAGCAAGTCCTTGCCTCTTTCCACTCTCATCGAGATACTTAAGCAGAAAACTGGTAAGGATGATATTGATGTTGGGAAACTTAGGCCAACACTCTTTGACGTCTTTGGCGAAGATGCAAGTCCTAAGGTGAAGAAATTCATGAAAATCATTTTTAACAAGCTACAAAAGAATAACGAGCAGGGTGGAGGCGGCGGGTTCATGGGTATGGTTGGTAACTTGGCTCAAGAGTTTCTGAAACAGAAACTTGATGAAAATGATGAGAGCTATGCAAAACCGGCCATGGAAACACACGTTGAAGGTAAACAGGAGGTTTATGCCGGTTCAGGTAATAGAGGTCTTCCAGACAGTGGCATTCTCGTCAGTGGGTGCCAAACAGACCAAACATCTGCGGATGCAACCCCTGCAGGCGGAGAGTCTTATGGTGCTCTAAGCAACGCAATTCAGGAAATCCTGGCCGAATCAGATGGTCCAGTCACCAATGAGGAGCTTGTTAGCAAGGCTAGGAAAAAGATGCAGAAACAAGGCTTCACACAACGCCCAGGCCTCTACTGCGATGATCATCACGTTGATGCTCCTTTTGTTTGTTGATTCTACTGTGCTATGCCTTCTCGAGTAGCTGTTGAAATACGACTGTGAAGTCAACGAGGTGTTATATAGCTACATCCTTTTGTGTATTTGTGTGATTGTTTGTGCTAATGTTGGAGTAGCTCTTTTACTCTGGTGTTTCAGTAGAACCATGCTCCATCATGTGAATGTGTACTATTTGGCTCTTTTTTTTTTCTTTTAAATTTGGTCAGAGAATAAGGTATTAAAGAACCACAGTTTTCGGTATTGTTTAGGATATTTGAAAGTTAAATCTGGAGAACTTGTTTGTATACTGAATG</genome_strand>
        <mrna_strand>CGGTGATCAAGTTCATGTGAAGAGCAAGTCCTTGCCTCTTTCCACTCTCATCGAGATACTTAAGCAGAAAACTGGTAAGGATGATATTGATGTTGGGAAACTTAGGCCAACACTCTTTGACGTCTTTGGCGAAGATGCAAGTCCTAAGGTGAAGAAATTCATGAAAATCATTTTTAACAAGCTACAAAAGAATAACGAGCAGGGTGGAGGCGGCGGGTTCATGGGTATGGTTGGTAACTTGGCTCAAGAGTTTCTGAAACAGAAACTTGATGAAAATGATGAGAGCTATGCAAAACCGGCCATGGAAACACACGTTGAAGGTAAACAGGAGGTTTATGCCGGTTCAGGTAATAGAGGTCTTCCAGACAGTGGCATTCTCGTCAGTGGGTGCCAAACAGACCAAACATCTGCGGATGCAACCCCTGCAGGCGGAGAGTCTTATGGTGCTCTAAGCAACGCAATTCAGGAAATCCTGGCCGAATCAGATGGTCCAGTCACCAATGAGGAGCTTGTTAGCAAGGCTAGGAAAAAGATGCAGAAACAAGGCTTCACACAACGCCCAGGCCTCTACTGCGATGATCATCACGTTGATGCTCCTTTTGTTTGTTGATTCTACTGTGCTATGCCTTCTCGAGTAGCTGTTGAAATACGACTGTGAAGTCAACGAGGTGTTATATAGCTACATCCTTTTGTGTATTTGTGTGATTGTTTGTGCTAATGTTGGAGTAGCTCTTTTACTCTGGTGTTTCAGTAGAACCATGCTCCATCATGTGAATGTGTACTATTTGGCTCTTTTTTTTTTCTTTTAAATTTGGTCAGAGAATAAGGTATTAAAGAACCACAGTTTTCGGTATTGTTTAGGATATTTGAAAGTAAAATCTGGAGAACTTGTTTGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E713755" ref_strand="+" ref_description="SGN-E713755 [FB09CC06]">
      <seq>aagtcctaaggtgaagaaattcatgaaaatcatttttaacaagctacaaaagaataacgagcagggtggaggcggcgggttcatgggtatggttggtaacttggctcaagagtttctgaaacagaaacttgatgaaaatgatgagagctatgcaaaaccggccatggaaacacacgttgaaggtaaacaggaggtttatgccggttcaggtaatagaggtcttccagacagtggcattctcgtcagtgggtgccaaacagaccaaacatctgcggatgcaacccctgcaggcggagagtcttatggtgctctaagcaacgcaattcaggaaatcctggccgaatcagatggtccagtcaccaatgaggagcttgttagcaaggctaggaaaaagatgcagaaacaaggcttcacacaacgcccaggcctctactgcgatgatcatcacgttgatgctccttttgtttgttgattctactgtgctatgccttctcgagtagctgttgaaatacgactgtgaagtcaacgaggtgttatatagctacatccttttgtgtatttgtgtgattgtttgtgctaatgttggagtagctcttttactctggtgtttcagtagaaccatgctccatcatgtgaatgtgtactatttggctcttttttttttcttttaaatttggtcagagaataaggtattaaagaaccacagttttcggtattgtttaggatatttgaaagttaaatctggagaacttgtttgtatactgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="-" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="1790" stop="425"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1490" g_stop="725" g_length="766"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="766" r_length="766" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="-" ref_id="SGN-E713755" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>766</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713755" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1490" e_stop="725"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTCCTAAGGTGAAGAAATTCATGAAAATCATTTTTAACAAGCTACAAAAGAATAACGAGCAGGGTGGAGGCGGCGGGTTCATGGGTATGGTTGGTAACTTGGCTCAAGAGTTTCTGAAACAGAAACTTGATGAAAATGATGAGAGCTATGCAAAACCGGCCATGGAAACACACGTTGAAGGTAAACAGGAGGTTTATGCCGGTTCAGGTAATAGAGGTCTTCCAGACAGTGGCATTCTCGTCAGTGGGTGCCAAACAGACCAAACATCTGCGGATGCAACCCCTGCAGGCGGAGAGTCTTATGGTGCTCTAAGCAACGCAATTCAGGAAATCCTGGCCGAATCAGATGGTCCAGTCACCAATGAGGAGCTTGTTAGCAAGGCTAGGAAAAAGATGCAGAAACAAGGCTTCACACAACGCCCAGGCCTCTACTGCGATGATCATCACGTTGATGCTCCTTTTGTTTGTTGATTCTACTGTGCTATGCCTTCTCGAGTAGCTGTTGAAATACGACTGTGAAGTCAACGAGGTGTTATATAGCTACATCCTTTTGTGTATTTGTGTGATTGTTTGTGCTAATGTTGGAGTAGCTCTTTTACTCTGGTGTTTCAGTAGAACCATGCTCCATCATGTGAATGTGTACTATTTGGCTCTTTTTTTTTTCTTTTAAATTTGGTCAGAGAATAAGGTATTAAAGAACCACAGTTTTCGGTATTGTTTAGGATATTTGAAAGTTAAATCTGGAGAACTTGTTTGTATACTGAA</genome_strand>
        <mrna_strand>AAGTCCTAAGGTGAAGAAATTCATGAAAATCATTTTTAACAAGCTACAAAAGAATAACGAGCAGGGTGGAGGCGGCGGGTTCATGGGTATGGTTGGTAACTTGGCTCAAGAGTTTCTGAAACAGAAACTTGATGAAAATGATGAGAGCTATGCAAAACCGGCCATGGAAACACACGTTGAAGGTAAACAGGAGGTTTATGCCGGTTCAGGTAATAGAGGTCTTCCAGACAGTGGCATTCTCGTCAGTGGGTGCCAAACAGACCAAACATCTGCGGATGCAACCCCTGCAGGCGGAGAGTCTTATGGTGCTCTAAGCAACGCAATTCAGGAAATCCTGGCCGAATCAGATGGTCCAGTCACCAATGAGGAGCTTGTTAGCAAGGCTAGGAAAAAGATGCAGAAACAAGGCTTCACACAACGCCCAGGCCTCTACTGCGATGATCATCACGTTGATGCTCCTTTTGTTTGTTGATTCTACTGTGCTATGCCTTCTCGAGTAGCTGTTGAAATACGACTGTGAAGTCAACGAGGTGTTATATAGCTACATCCTTTTGTGTATTTGTGTGATTGTTTGTGCTAATGTTGGAGTAGCTCTTTTACTCTGGTGTTTCAGTAGAACCATGCTCCATCATGTGAATGTGTACTATTTGGCTCTTTTTTTTTTCTTTTAAATTTGGTCAGAGAATAAGGTATTAAAGAACCACAGTTTTCGGTATTGTTTAGGATATTTGAAAGTTAAATCTGGAGAACTTGTTTGTATACTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E746750" ref_strand="+" ref_description="SGN-E746750 [GI|23343884]">
      <seq>attggaatcaattatccaggaacaaaagcagaacttagaggttgtattaacgatgttaggcgaatgtacaattgtttacttaatcgttacggatttgctgaggaagacattactgttcttatagatactgatgattcttacacacaaccaactggtcggaatatacgcaaggctttatcggatcttgttggatctgctgaatcaggggattgtttgtttgtgcattacagtggacatggaactaggttacctgctgaaacgggtgaagaagatgatactggttttgatgagtgtattgttccttgtgatatgaatcttattacagatgatgattttagagagctcgttgacaaagttcctgaaggttgccagatcacaattgtatctgactcatgccacagtggtggcctcattgacaaagctaaagagcagataggggagagccacaagcaaggtgatgacgatgaaggccatggatctggttttggattcaagaatttcttacgtcgaaatgttgaagatgcatttgaatcccggggtatccaccttccaggtcgccaccatcgccgtgaggaagaagaggagaattttgctgagagtagtgtgattgagacggaagacggtgatcaagttcatgtgaagagcaagtccttgcctctttccactctcatcgagatacttaagcagaaaactggtaaggatgatattgatgttgggaaacttaggccaacactctttgacgtctttggcgaagatgcaagtcctaaggtgaagaaattcatgaaaatcatttttaacaagctacaaaagaataacgagcagggtggaggcggcgggttcatgggtatggttggtaacttggctcaagagtttctgaaacagaaacttgatgaaaatgatgagagctatgcaaaaccggccatggaaacacacgttgaaggtaaacaggaggtttatgccggttcaggtaatagaggtcttccagacagtggcattctcgtcagtgggtgccaaacagaccaaacatctgcggatgcaacccctgcaggcggagagtcttatggtgctctaagcaacgcaattcaggaaatcctggccgaatcagatggtccagtcaccaatgaggagcttgttagcaaggctaggaaaaagatgcagaaacaaggcttcacacaacgcccaggcctatactgcgatgatcatcacgttgatgctccttttgtttgttgattcaactgtgctatgccttctcgagtagctgttgaaatacgactgtgaagtcaacgaggtgttatatagctacatccttttgtgtatttgtgtgattgtttgtgctaatgttggagtagctcttttactctggtgtttcagtagaaccatgctccatcatgtgaatgtgtactatttggctctttttttttcttttaaatttggtcagagaataaggtattaaagaaccacagttttcggtattgtttaggatatttgaaagttaaatctggagaacttgtttgtataaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="-" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="3918" stop="430"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3618" g_stop="3294" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3293" i_stop="1924" i_length="1370">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1923" g_stop="733" g_length="1191"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="1515" r_length="1190" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1516" polyA_stop="1540"/>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="-" ref_id="SGN-E746750" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>1516</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746750" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3618" e_stop="3294"/>
          <exon e_start="1923" e_stop="733"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGGAATCAATTATCCAGGAACAAAAGCAGAACTTAGAGGTTGTATTAACGATGTTAAGCGAATGTACAATTGTTTACTTAATCGTTACGGATTTGCTGAGGAAGACATTACTGTTCTTATAGATACTGATGATTCTTACACACAACCAACTGGTCGGAATATACGTAAAGCTTTATCGGATCTTGTTGGATCTGCTGAATCAGGGGATTGTTTGTTTGTGCATTACAGTGGACATGGAACTAGGTTACCTGCTGAAACGGGTGAAGAAGATGATACTGGTTTTGATGAGTGTATTGTTCCTTGTGATATGAATCTTATTACAGGTAATTCAACATTTTTTTTTACTTAAACCGCTGTTTTTTAAGGATTTGGAGTAGGGGAAATGGGGCGGGGATTATGAGGTGGGGAATCGAGTTGTCAGGTAGTCAATCGACTGAGCTATTTAGATTGTACTTGATCTAAATGATGGGTTTGTTCCAAGATTGTTTTTTTCTTTGTGTTTGTTGAATTATGTTGGGGGTTATTAGTTGTATTGGTTTGATTTAAATGATGGGTTTGTTCCAAAATTTGTTTTTTTTGTGTGTGGTATGCGTTTTAATGCAGCTACTTGAGCATTTCTTTGATCAAAATTAGGAATTGAATACTTAGGTAGTTAATCAACTGAGTTAGTAAGTCTGTACTTGATCTATATCATGAGTTTGTTAAAAAAATGTTTTTTTTTTGTGTGTTGTGTTGAATTTATTGGGGGTTTAGTTGTATTGCTTTGATTTGAAGTATGTATTTGCTCCAAAATTTGTTGTTTTTTGATTTTCTGTGTTGAGTACTTATATGGTTTGATCTAGATCATGGGTGTCTTCGAAAATTTGTTTTTTTTTAATGTGTTGTGTGTGTGATATGAATTTTATTGCAGGTATTTGTATTGCTTTGATCTAAATTTTGGGTTTGTTTCAAATTTCGCTTTTTGTTTGTTTGGGGTTGGGTGTTAGAGTTGATGTGGTAGGGTCTAGGAGATTGAGATCTTCAAATGGTTTTCTCAAAAAATGATCTTGAAAGGTTGAGTTGATCTGTTTTGATGATAATTCAGGTGGATCAAAGATATAAGGAGATTTGTAAAACGAGGAAATGGGATTTTAGAAATGAGAATTTGGGTTTCTAGAGTGATTGAAATAGTTGAATGGGGGACGCGTAACAGTTGGGAAAAAAGGAGGAGTGTAGTTTACTACATTGTGATACGAATCTCATATACAGGAACTTAATCATGGGTTGTTCCAAAATTTGTTTTTTTTTCCGTGTGTGTAAGTAATTTGTAGATTGGTATTAGACTAAGATCATCATAGAATATTGAGTAAAAAAGGATCTTGAAAGTGCTTAGTTGATCTGTTTTGATGATTATTGAGATGGATCCCGAGTTTTAGGAAGATTTGTGAAATGGGGAACTAGGATTTAGAAATGAGAATTTGGATCCAGAGCGATTAAAATTATTGAATGGTGGGAGATCAGAAAAAATTGGCAAAAAAAAGAGAATGGTCGTGATCCCACAAGTGGGATCTTGAAAGGCTAGGATGTACGCAAACCTTACCCTTGATTTCCGACACTTGGCTATACAGTTTATTACCTCTTGCTTATTTAATATTGGAAAAGTAACAGGCAATTAATATTGAACTGTTGGATGTGTTGTTTCATCCTTGATCAGATGATGATTTTAGAGAGCTCGTTGACAAAGTTCCTGAAGGTTGCCAGATCACAATTGTATCTGACTCATGCCACAGTGGTGGCCTCATTGACAAAGCTAAAGAGCAGATAGGGGAGAGCCACAAGCAAGGTGATGACGATGAAGGCCATGGATCTGGTTTTGGATTCAAGAATTTCTTACGTCGAAATGTTGAAGATGCATTTGAATCCCGGGGTATCCACCTTCCAGGTCGCCACCATCGCCGTGAGGAAGAAGAGGAGAATTTTGCTGAGAGTAGTGTGATTGAGACGGAAGACGGTGATCAAGTTCATGTGAAGAGCAAGTCCTTGCCTCTTTCCACTCTCATCGAGATACTTAAGCAGAAAACTGGTAAGGATGATATTGATGTTGGGAAACTTAGGCCAACACTCTTTGACGTCTTTGGCGAAGATGCAAGTCCTAAGGTGAAGAAATTCATGAAAATCATTTTTAACAAGCTACAAAAGAATAACGAGCAGGGTGGAGGCGGCGGGTTCATGGGTATGGTTGGTAACTTGGCTCAAGAGTTTCTGAAACAGAAACTTGATGAAAATGATGAGAGCTATGCAAAACCGGCCATGGAAACACACGTTGAAGGTAAACAGGAGGTTTATGCCGGTTCAGGTAATAGAGGTCTTCCAGACAGTGGCATTCTCGTCAGTGGGTGCCAAACAGACCAAACATCTGCGGATGCAACCCCTGCAGGCGGAGAGTCTTATGGTGCTCTAAGCAACGCAATTCAGGAAATCCTGGCCGAATCAGATGGTCCAGTCACCAATGAGGAGCTTGTTAGCAAGGCTAGGAAAAAGATGCAGAAACAAGGCTTCACACAACGCCCAGGCCTCTACTGCGATGATCATCACGTTGATGCTCCTTTTGTTTGTTGATTCTACTGTGCTATGCCTTCTCGAGTAGCTGTTGAAATACGACTGTGAAGTCAACGAGGTGTTATATAGCTACATCCTTTTGTGTATTTGTGTGATTGTTTGTGCTAATGTTGGAGTAGCTCTTTTACTCTGGTGTTTCAGTAGAACCATGCTCCATCATGTGAATGTGTACTATTTGGCTCTTTTTTTTTTCTTTTAAATTTGGTCAGAGAATAAGGTATTAAAGAACCACAGTTTTCGGTATTGTTTAGGATATTTGAAAGTTAAATCTGGAGAACTTGTTTGT</genome_strand>
        <mrna_strand>ATTGGAATCAATTATCCAGGAACAAAAGCAGAACTTAGAGGTTGTATTAACGATGTTAGGCGAATGTACAATTGTTTACTTAATCGTTACGGATTTGCTGAGGAAGACATTACTGTTCTTATAGATACTGATGATTCTTACACACAACCAACTGGTCGGAATATACGCAAGGCTTTATCGGATCTTGTTGGATCTGCTGAATCAGGGGATTGTTTGTTTGTGCATTACAGTGGACATGGAACTAGGTTACCTGCTGAAACGGGTGAAGAAGATGATACTGGTTTTGATGAGTGTATTGTTCCTTGTGATATGAATCTTATTACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATGATTTTAGAGAGCTCGTTGACAAAGTTCCTGAAGGTTGCCAGATCACAATTGTATCTGACTCATGCCACAGTGGTGGCCTCATTGACAAAGCTAAAGAGCAGATAGGGGAGAGCCACAAGCAAGGTGATGACGATGAAGGCCATGGATCTGGTTTTGGATTCAAGAATTTCTTACGTCGAAATGTTGAAGATGCATTTGAATCCCGGGGTATCCACCTTCCAGGTCGCCACCATCGCCGTGAGGAAGAAGAGGAGAATTTTGCTGAGAGTAGTGTGATTGAGACGGAAGACGGTGATCAAGTTCATGTGAAGAGCAAGTCCTTGCCTCTTTCCACTCTCATCGAGATACTTAAGCAGAAAACTGGTAAGGATGATATTGATGTTGGGAAACTTAGGCCAACACTCTTTGACGTCTTTGGCGAAGATGCAAGTCCTAAGGTGAAGAAATTCATGAAAATCATTTTTAACAAGCTACAAAAGAATAACGAGCAGGGTGGAGGCGGCGGGTTCATGGGTATGGTTGGTAACTTGGCTCAAGAGTTTCTGAAACAGAAACTTGATGAAAATGATGAGAGCTATGCAAAACCGGCCATGGAAACACACGTTGAAGGTAAACAGGAGGTTTATGCCGGTTCAGGTAATAGAGGTCTTCCAGACAGTGGCATTCTCGTCAGTGGGTGCCAAACAGACCAAACATCTGCGGATGCAACCCCTGCAGGCGGAGAGTCTTATGGTGCTCTAAGCAACGCAATTCAGGAAATCCTGGCCGAATCAGATGGTCCAGTCACCAATGAGGAGCTTGTTAGCAAGGCTAGGAAAAAGATGCAGAAACAAGGCTTCACACAACGCCCAGGCCTATACTGCGATGATCATCACGTTGATGCTCCTTTTGTTTGTTGATTCAACTGTGCTATGCCTTCTCGAGTAGCTGTTGAAATACGACTGTGAAGTCAACGAGGTGTTATATAGCTACATCCTTTTGTGTATTTGTGTGATTGTTTGTGCTAATGTTGGAGTAGCTCTTTTACTCTGGTGTTTCAGTAGAACCATGCTCCATCATGTGAATGTGTACTATTTGGCTC-TTTTTTTTTCTTTTAAATTTGGTCAGAGAATAAGGTATTAAAGAACCACAGTTTTCGGTATTGTTTAGGATATTTGAAAGTTAAATCTGGAGAACTTGTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E223125" ref_strand="+" ref_description="SGN-E223125 [cLEL-14-C12](-)">
      <seq>agtcaccaatgaggagcttgttagcaaggctaggaaaaagatgcagaaacaaggcttcacacaacgcccaggcctctactgcgatgatcatcacgttaatgcaccttttgtttgttgattcaactgtgctatgccttctcgagtagctgttgaaatacgactgtgaagtcaacgaggtgttatatagctacatccttttgtgtatttgtgtgattgtttgtgctaatgttggagtagctcttttactctggtgtttcagtagaaccatgctccatcatgtgaatgtgtactatttggctcttttttttttcttttaaatttggtcagagaataaggtattaaagaaccacagttttcggtattgtttaggatatttcaaagttaaatctggagancttgtttgtaaaagaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="-" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="1436" stop="430"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1136" g_stop="733" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="404" r_length="404" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="405" polyA_stop="423"/>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="-" ref_id="SGN-E223125" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E223125" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1136" e_stop="733"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCACCAATGAGGAGCTTGTTAGCAAGGCTAGGAAAAAGATGCAGAAACAAGGCTTCACACAACGCCCAGGCCTCTACTGCGATGATCATCACGTTGATGCTCCTTTTGTTTGTTGATTCTACTGTGCTATGCCTTCTCGAGTAGCTGTTGAAATACGACTGTGAAGTCAACGAGGTGTTATATAGCTACATCCTTTTGTGTATTTGTGTGATTGTTTGTGCTAATGTTGGAGTAGCTCTTTTACTCTGGTGTTTCAGTAGAACCATGCTCCATCATGTGAATGTGTACTATTTGGCTCTTTTTTTTTTCTTTTAAATTTGGTCAGAGAATAAGGTATTAAAGAACCACAGTTTTCGGTATTGTTTAGGATATTTGAAAGTTAAATCTGGAGAACTTGTTTGT</genome_strand>
        <mrna_strand>AGTCACCAATGAGGAGCTTGTTAGCAAGGCTAGGAAAAAGATGCAGAAACAAGGCTTCACACAACGCCCAGGCCTCTACTGCGATGATCATCACGTTAATGCACCTTTTGTTTGTTGATTCAACTGTGCTATGCCTTCTCGAGTAGCTGTTGAAATACGACTGTGAAGTCAACGAGGTGTTATATAGCTACATCCTTTTGTGTATTTGTGTGATTGTTTGTGCTAATGTTGGAGTAGCTCTTTTACTCTGGTGTTTCAGTAGAACCATGCTCCATCATGTGAATGTGTACTATTTGGCTCTTTTTTTTTTCTTTTAAATTTGGTCAGAGAATAAGGTATTAAAGAACCACAGTTTTCGGTATTGTTTAGGATATTTCAAAGTTAAATCTGGAGANCTTGTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E222748" ref_strand="+" ref_description="SGN-E222748 [cLEL-16-O13](-)">
      <seq>agtcaccaatgaggagcttgttagcaaggctaggaaaaagatgcagaaacaaggcttcacacaacgcccaggcctctactgcgatgatcatcacgttgatgctccttttgtttgttgattctactgtgctatgccttctcgagtagctgttgaaatacgactgtgaagtcaacgaggtgttatatagctacatccttttgtgtatttgtgtgattgtttgtgctaatgttggagtagctcttttactctggtgtttcagtagaaccatgctccatcatgtgaatgtgtactatttggctcttttttttttcttttaaatttggtcagagaataaggtattaaagaaccacagttttcggtattgtttaggatatttgaaacctccatctggagaacttgtttgtaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="-" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="1436" stop="430"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1136" g_stop="733" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="404" r_length="404" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="405" polyA_stop="424"/>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="-" ref_id="SGN-E222748" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E222748" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1136" e_stop="733"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCACCAATGAGGAGCTTGTTAGCAAGGCTAGGAAAAAGATGCAGAAACAAGGCTTCACACAACGCCCAGGCCTCTACTGCGATGATCATCACGTTGATGCTCCTTTTGTTTGTTGATTCTACTGTGCTATGCCTTCTCGAGTAGCTGTTGAAATACGACTGTGAAGTCAACGAGGTGTTATATAGCTACATCCTTTTGTGTATTTGTGTGATTGTTTGTGCTAATGTTGGAGTAGCTCTTTTACTCTGGTGTTTCAGTAGAACCATGCTCCATCATGTGAATGTGTACTATTTGGCTCTTTTTTTTTTCTTTTAAATTTGGTCAGAGAATAAGGTATTAAAGAACCACAGTTTTCGGTATTGTTTAGGATATTTGAAAGTTAAATCTGGAGAACTTGTTTGT</genome_strand>
        <mrna_strand>AGTCACCAATGAGGAGCTTGTTAGCAAGGCTAGGAAAAAGATGCAGAAACAAGGCTTCACACAACGCCCAGGCCTCTACTGCGATGATCATCACGTTGATGCTCCTTTTGTTTGTTGATTCTACTGTGCTATGCCTTCTCGAGTAGCTGTTGAAATACGACTGTGAAGTCAACGAGGTGTTATATAGCTACATCCTTTTGTGTATTTGTGTGATTGTTTGTGCTAATGTTGGAGTAGCTCTTTTACTCTGGTGTTTCAGTAGAACCATGCTCCATCATGTGAATGTGTACTATTTGGCTCTTTTTTTTTTCTTTTAAATTTGGTCAGAGAATAAGGTATTAAAGAACCACAGTTTTCGGTATTGTTTAGGATATTTGAAACCTCCATCTGGAGAACTTGTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E694737" ref_strand="+" ref_description="SGN-E694737 [LH_Ea04L07](-)">
      <seq>aagaaattcatgaaagtcatttttaacaagctacaaaagaataacgagcagggtggaggcggcgggttcatgggtatggttggtaacttggctcaagagtttttgaaacagaaacttgatgaaaatgatgagagctatgcaaaaccggccatggaaacacacgttgaaggtaaacaggaggtttatgccggttcaggtaatagaggttttccagacagtggcatttttgtcagtgggtgccaaacagaccaaacatttgcggatgcaacccctgcaggcggagagttttatggtgctttaagcaacgcaattcaggaaatcctggctgaatcagatggtccagtccccaatgaggagcttgttagcaaggctaggaaaaagatgcagaaacaaggcttcacccaacgcccaggcctttactgcgatgatcatcacgttgatgctccttttgtttgttgattttactgtgctatgccttctcgagtagctgttgaaatacgattgtgaagtcaacgaggtgttatatagctacatccttttgtgtatttgtgtgattgtttgtgctaatgttggagtagctcttttgctttggtgttgcagtagaactgttttccatcatgtgaatgtgtactatttggctctgtttcttttttcttttaaatttggtcagagaataaggtattaaagaaccccagttttcggtactgttttggaaagttgaaagttaaatctggagaacttgttttgtatctttatagggttatattttaatgcccctggaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="-" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="1777" stop="400"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1477" g_stop="735" g_length="743"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="745" r_length="745" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="781" polyA_stop="799"/>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="-" ref_id="SGN-E694737" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E694737" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1477" e_stop="735"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAATTCATGAAAATCATTTTTAACAAGCTACAAAAGAATAACGAGCAGGGTGGAGGCGGCGGGTTCATGGGTATGGTTGGTAACTTGGCTCAAGAGTTTCTGAAACAGAAACTTGATGAAAATGATGAGAGCTATGCAAAACCGGCCATGGAAACACACGTTGAAGGTAAACAGGAGGTTTATGCCGGTTCAGGTAATAGAGGTCTTCCAGACAGTGGCATTCTCGTCAGTGGGTGCCAAACAGACCAAACATCTGCGGATGCAACCCCTGCAGGCGGAGAGTCTTATGGTGCTCTAAGCAACGCAATTCAGGAAATCCTGGCCGAATCAGATGGTCCAGTCACCAATGAGGAGCTTGTTAGCAAGGCTAGGAAAAAGATGCAGAAACAAGGCTTCACACAACGCCCAGGCCTCTACTGCGATGATCATCACGTTGATGCTCCTTTTGTTTGTTGATTCTACTGTGCTATGCCTTCTCGAGTAGCTGTTGAAATACGACTGTGAAGTCAACGAGGTGTTATATAGCTACATCCTTTTGTGTATTTGTGTGATTGTTTGTGCTAATGTTGGAGTAGCTCTTTTACTCTGGTGTTTCAGTAGAACCATGCTCCATCATGTGAATGTGTACTATTTGGCTCT-TTT-TTTTTTCTTTTAAATTTGGTCAGAGAATAAGGTATTAAAGAACCACAGTTTTCGGTATTGTTTAGGATATTTGAAAGTTAAATCTGGAGAACTTGTTT</genome_strand>
        <mrna_strand>AAGAAATTCATGAAAGTCATTTTTAACAAGCTACAAAAGAATAACGAGCAGGGTGGAGGCGGCGGGTTCATGGGTATGGTTGGTAACTTGGCTCAAGAGTTTTTGAAACAGAAACTTGATGAAAATGATGAGAGCTATGCAAAACCGGCCATGGAAACACACGTTGAAGGTAAACAGGAGGTTTATGCCGGTTCAGGTAATAGAGGTTTTCCAGACAGTGGCATTTTTGTCAGTGGGTGCCAAACAGACCAAACATTTGCGGATGCAACCCCTGCAGGCGGAGAGTTTTATGGTGCTTTAAGCAACGCAATTCAGGAAATCCTGGCTGAATCAGATGGTCCAGTCCCCAATGAGGAGCTTGTTAGCAAGGCTAGGAAAAAGATGCAGAAACAAGGCTTCACCCAACGCCCAGGCCTTTACTGCGATGATCATCACGTTGATGCTCCTTTTGTTTGTTGATTTTACTGTGCTATGCCTTCTCGAGTAGCTGTTGAAATACGATTGTGAAGTCAACGAGGTGTTATATAGCTACATCCTTTTGTGTATTTGTGTGATTGTTTGTGCTAATGTTGGAGTAGCTCTTTTGCTTTGGTGTTGCAGTAGAACTGTTTTCCATCATGTGAATGTGTACTATTTGGCTCTGTTTCTTTTTTCTTTTAAATTTGGTCAGAGAATAAGGTATTAAAGAACCCCAGTTTTCGGTACTGTTTTGGAAAGTTGAAAGTTAAATCTGGAGAACTTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E598335" ref_strand="+" ref_description="SGN-E598335 [74006]">
      <seq>ggaacttgttagcaaggctaggaaaaagatgcagaaacaaggcttcacacaacgtccaggcctctactgcgatgatcatcatgttgatgctccttttgtttgttgattctgctgtgctatgccttctcgagtagctgttgaaatacgactgtgaagtcaacgaggtgttatataactacatccttttgtgtatttgtgtgattgtttgtgcttatgttggagtagctcttctactctggtgttgcagaagaaccattctccatcatgtgaatgtgtactatttggctctgtttttttttatcttttaaatttggtcagagaataaggtattaaagaaccacagttttcggtattgttttggatatttgaaagtttaatctggaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="-" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="1424" stop="442"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1124" g_stop="745" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="383" r_length="383" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="384" polyA_stop="394"/>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="-" ref_id="SGN-E598335" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>380</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E598335" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1124" e_stop="745"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGCTTGTTAGCAAGGCTAGGAAAAAGATGCAGAAACAAGGCTTCACACAACGCCCAGGCCTCTACTGCGATGATCATCACGTTGATGCTCCTTTTGTTTGTTGATTCTACTGTGCTATGCCTTCTCGAGTAGCTGTTGAAATACGACTGTGAAGTCAACGAGGTGTTATATAGCTACATCCTTTTGTGTATTTGTGTGATTGTTTGTGCTAATGTTGGAGTAGCTCTTTTACTCTGGTGTTTCAGTAGAACCATGCTCCATCATGTGAATGTGTACTATTTGGCTC--TTTTTTTTT-TCTTTTAAATTTGGTCAGAGAATAAGGTATTAAAGAACCACAGTTTTCGGTATTGTTTAGGATATTTGAAAGTTAAATCTGGA</genome_strand>
        <mrna_strand>GGAACTTGTTAGCAAGGCTAGGAAAAAGATGCAGAAACAAGGCTTCACACAACGTCCAGGCCTCTACTGCGATGATCATCATGTTGATGCTCCTTTTGTTTGTTGATTCTGCTGTGCTATGCCTTCTCGAGTAGCTGTTGAAATACGACTGTGAAGTCAACGAGGTGTTATATAACTACATCCTTTTGTGTATTTGTGTGATTGTTTGTGCTTATGTTGGAGTAGCTCTTCTACTCTGGTGTTGCAGAAGAACCATTCTCCATCATGTGAATGTGTACTATTTGGCTCTGTTTTTTTTTATCTTTTAAATTTGGTCAGAGAATAAGGTATTAAAGAACCACAGTTTTCGGTATTGTTTTGGATATTTGAAAGTTTAATCTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E288843" ref_strand="-" ref_description="SGN-E288843 [cLES-17-N15]">
      <seq>ggttttccaaacagtggcattttcgtcagtgggtgccaaacagaccaaacatttggggatgcaacccctgcaggcgaaaagtcttatggtgctttaagcaacgcaattcaggaaatcctggccgaatcaaatggtccagtcaccaataaggagcttgttagcaaggctaggaaaaaaatgcagaaacaaggtttcacacaacgcccaggcctttattggaatgatcatcacgttgaggccccttttgtttgttgattcaactgggcaaagccttctcgagaaactgttaaaaaacgcctgtgaagtcaacaaggtgttaaaaagccacacccttttgggaatttgggtgattgtttgtgcaaatgttggagaagctcttttactctggtgtttcagtaaaaccatgctccatcatgtgaatgtgtacaatttggctcttttttttttcttttaaatttggtcagagaataaggtattaaagaaccccagttttcggtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="-" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="1573" stop="476"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1273" g_stop="777" g_length="497"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="497" r_length="497" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="498" polyA_stop="543"/>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="-" ref_id="SGN-E288843" ref_strand="-">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="0.915" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288843" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="1273" e_stop="777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCTTCCAGACAGTGGCATTCTCGTCAGTGGGTGCCAAACAGACCAAACATCTGCGGATGCAACCCCTGCAGGCGGAGAGTCTTATGGTGCTCTAAGCAACGCAATTCAGGAAATCCTGGCCGAATCAGATGGTCCAGTCACCAATGAGGAGCTTGTTAGCAAGGCTAGGAAAAAGATGCAGAAACAAGGCTTCACACAACGCCCAGGCCTCTACTGCGATGATCATCACGTTGATGCTCCTTTTGTTTGTTGATTCTACTGTGCTATGCCTTCTCGAGTAGCTGTTGAAATACGACTGTGAAGTCAACGAGGTGTTATATAGCTACATCCTTTTGTGTATTTGTGTGATTGTTTGTGCTAATGTTGGAGTAGCTCTTTTACTCTGGTGTTTCAGTAGAACCATGCTCCATCATGTGAATGTGTACTATTTGGCTCTTTTTTTTTTCTTTTAAATTTGGTCAGAGAATAAGGTATTAAAGAACCACAGTTTTCGGT</genome_strand>
        <mrna_strand>GGTTTTCCAAACAGTGGCATTTTCGTCAGTGGGTGCCAAACAGACCAAACATTTGGGGATGCAACCCCTGCAGGCGAAAAGTCTTATGGTGCTTTAAGCAACGCAATTCAGGAAATCCTGGCCGAATCAAATGGTCCAGTCACCAATAAGGAGCTTGTTAGCAAGGCTAGGAAAAAAATGCAGAAACAAGGTTTCACACAACGCCCAGGCCTTTATTGGAATGATCATCACGTTGAGGCCCCTTTTGTTTGTTGATTCAACTGGGCAAAGCCTTCTCGAGAAACTGTTAAAAAACGCCTGTGAAGTCAACAAGGTGTTAAAAAGCCACACCCTTTTGGGAATTTGGGTGATTGTTTGTGCAAATGTTGGAGAAGCTCTTTTACTCTGGTGTTTCAGTAAAACCATGCTCCATCATGTGAATGTGTACAATTTGGCTCTTTTTTTTTTCTTTTAAATTTGGTCAGAGAATAAGGTATTAAAGAACCCCAGTTTTCGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E745841" ref_strand="+" ref_description="SGN-E745841 [GI|47105029]">
      <seq>gatcccaaaaaattctctaaactaaaaagatcaattttttttcttgaaaaatttcaatggcgaaaaaagcagtattaattggaatcaattatccaggaacaaaagcagaacttagaggttgtattaacgatgttaagcgaatgtacaattgtttacttaatcgttacggatttgctgaggaagacattactgttcttatagatactgatgattcttacacacaaccaactggtcggaatatacgtaaagctttatcggatcttgttggatctgctgaatcaggggattgtttgtttgtgcattacagtggacatggaactaggttacctgctgaaacgggtgaagaagatgatactggttttgatgagtgtattgttccttgtgatatgaatcttattacagatgatgattttagagagctcgttgacaaagttcctgaaggttgccagatcacaattgtatctgactcatgccacagtggtggcctcattgacaaagctaaagagcagataggggagagccacaagcaaggtgatgacgatgaaggccatggatctggttttggattcaagaatttcttacgtcgaaatgttgaagatgcatttgaatcccgggtatccaccttccaggtcgccaccatcgccgtgaggaagaagaggagaattttgctgagagtagtgtcattgagacggaagacggtgatcaagttcatgtgaagagcaagtccttgcctctttccactctcatcgagatacttaagcagaaaactggtaaggatgatattgatgttgggaaacttaggccaacactctttgacgtctttggcgaagatgcaagtcctaaggtgaagaaattcatgaaaatcatttttaacaagctacaaaagaataacgagcagggtggaggcggcgggttcatgggtatggttggtaacttggctcaagagtttctgaaacagaaacttgatgaaaatgatgagagctatgcaaaaccggccatggaaacacacgtcgaagttaaacaggaggtttatgccggttcaggtaatagaggtcttccagacagtggcattctcgtcagtgggtgccaaacagaccaaacatctgcggatgcaacccctgcaggcggagagtcttatggtgctctaagcaacgcaattcaggaaatcctggctgaatcagatggtccagtcaccaatgaggagcttgttagcaaggctaggaaaaagatgcagaaacaaggcttcacacaacgcccaggcctctactgcgatgatcatcacgttgatgctccttttgtttgttgattctactgtgctatgccttctcgagtagctgttgaaatacgactgtgaagtcaacgaggtgttatatagctacatccttttgtgtatttgtgtgattgtttgtgctaatgttggagtagctcttttactctggtgtttcagtagaaccatgctccatcatgtgaatgtgtactatttggctctgttttttttttcttttaaatttggtcagagaataaggtattaaagaaccacagttttcgctgaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="-" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="3994" stop="477"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3695" g_stop="3294" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="402" r_length="402" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3293" i_stop="1924" i_length="1370">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1923" g_stop="779" g_length="1145"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="1548" r_length="1146" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1552" polyA_stop="1567"/>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="-" ref_id="SGN-E745841" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>1547</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745841" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3695" e_stop="3294"/>
          <exon e_start="1923" e_stop="779"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCCCAAAAAATTCTCTAAACTAAAAAGATCAATTTTTTTTCTTGAAAAATTTCAATGGCGAAAAAAGCAGTATTAATTGGAATCAATTATCCAGGAACAAAAGCAGAACTTAGAGGTTGTATTAACGATGTTAAGCGAATGTACAATTGTTTACTTAATCGTTACGGATTTGCTGAGGAAGACATTACTGTTCTTATAGATACTGATGATTCTTACACACAACCAACTGGTCGGAATATACGTAAAGCTTTATCGGATCTTGTTGGATCTGCTGAATCAGGGGATTGTTTGTTTGTGCATTACAGTGGACATGGAACTAGGTTACCTGCTGAAACGGGTGAAGAAGATGATACTGGTTTTGATGAGTGTATTGTTCCTTGTGATATGAATCTTATTACAGGTAATTCAACATTTTTTTTTACTTAAACCGCTGTTTTTTAAGGATTTGGAGTAGGGGAAATGGGGCGGGGATTATGAGGTGGGGAATCGAGTTGTCAGGTAGTCAATCGACTGAGCTATTTAGATTGTACTTGATCTAAATGATGGGTTTGTTCCAAGATTGTTTTTTTCTTTGTGTTTGTTGAATTATGTTGGGGGTTATTAGTTGTATTGGTTTGATTTAAATGATGGGTTTGTTCCAAAATTTGTTTTTTTTGTGTGTGGTATGCGTTTTAATGCAGCTACTTGAGCATTTCTTTGATCAAAATTAGGAATTGAATACTTAGGTAGTTAATCAACTGAGTTAGTAAGTCTGTACTTGATCTATATCATGAGTTTGTTAAAAAAATGTTTTTTTTTTGTGTGTTGTGTTGAATTTATTGGGGGTTTAGTTGTATTGCTTTGATTTGAAGTATGTATTTGCTCCAAAATTTGTTGTTTTTTGATTTTCTGTGTTGAGTACTTATATGGTTTGATCTAGATCATGGGTGTCTTCGAAAATTTGTTTTTTTTTAATGTGTTGTGTGTGTGATATGAATTTTATTGCAGGTATTTGTATTGCTTTGATCTAAATTTTGGGTTTGTTTCAAATTTCGCTTTTTGTTTGTTTGGGGTTGGGTGTTAGAGTTGATGTGGTAGGGTCTAGGAGATTGAGATCTTCAAATGGTTTTCTCAAAAAATGATCTTGAAAGGTTGAGTTGATCTGTTTTGATGATAATTCAGGTGGATCAAAGATATAAGGAGATTTGTAAAACGAGGAAATGGGATTTTAGAAATGAGAATTTGGGTTTCTAGAGTGATTGAAATAGTTGAATGGGGGACGCGTAACAGTTGGGAAAAAAGGAGGAGTGTAGTTTACTACATTGTGATACGAATCTCATATACAGGAACTTAATCATGGGTTGTTCCAAAATTTGTTTTTTTTTCCGTGTGTGTAAGTAATTTGTAGATTGGTATTAGACTAAGATCATCATAGAATATTGAGTAAAAAAGGATCTTGAAAGTGCTTAGTTGATCTGTTTTGATGATTATTGAGATGGATCCCGAGTTTTAGGAAGATTTGTGAAATGGGGAACTAGGATTTAGAAATGAGAATTTGGATCCAGAGCGATTAAAATTATTGAATGGTGGGAGATCAGAAAAAATTGGCAAAAAAAAGAGAATGGTCGTGATCCCACAAGTGGGATCTTGAAAGGCTAGGATGTACGCAAACCTTACCCTTGATTTCCGACACTTGGCTATACAGTTTATTACCTCTTGCTTATTTAATATTGGAAAAGTAACAGGCAATTAATATTGAACTGTTGGATGTGTTGTTTCATCCTTGATCAGATGATGATTTTAGAGAGCTCGTTGACAAAGTTCCTGAAGGTTGCCAGATCACAATTGTATCTGACTCATGCCACAGTGGTGGCCTCATTGACAAAGCTAAAGAGCAGATAGGGGAGAGCCACAAGCAAGGTGATGACGATGAAGGCCATGGATCTGGTTTTGGATTCAAGAATTTCTTACGTCGAAATGTTGAAGATGCATTTGAATCCCGGGGTATCCACCTTCCAGGTCGCCACCATCGCCGTGAGGAAGAAGAGGAGAATTTTGCTGAGAGTAGTGTGATTGAGACGGAAGACGGTGATCAAGTTCATGTGAAGAGCAAGTCCTTGCCTCTTTCCACTCTCATCGAGATACTTAAGCAGAAAACTGGTAAGGATGATATTGATGTTGGGAAACTTAGGCCAACACTCTTTGACGTCTTTGGCGAAGATGCAAGTCCTAAGGTGAAGAAATTCATGAAAATCATTTTTAACAAGCTACAAAAGAATAACGAGCAGGGTGGAGGCGGCGGGTTCATGGGTATGGTTGGTAACTTGGCTCAAGAGTTTCTGAAACAGAAACTTGATGAAAATGATGAGAGCTATGCAAAACCGGCCATGGAAACACACGTTGAAGGTAAACAGGAGGTTTATGCCGGTTCAGGTAATAGAGGTCTTCCAGACAGTGGCATTCTCGTCAGTGGGTGCCAAACAGACCAAACATCTGCGGATGCAACCCCTGCAGGCGGAGAGTCTTATGGTGCTCTAAGCAACGCAATTCAGGAAATCCTGGCCGAATCAGATGGTCCAGTCACCAATGAGGAGCTTGTTAGCAAGGCTAGGAAAAAGATGCAGAAACAAGGCTTCACACAACGCCCAGGCCTCTACTGCGATGATCATCACGTTGATGCTCCTTTTGTTTGTTGATTCTACTGTGCTATGCCTTCTCGAGTAGCTGTTGAAATACGACTGTGAAGTCAACGAGGTGTTATATAGCTACATCCTTTTGTGTATTTGTGTGATTGTTTGTGCTAATGTTGGAGTAGCTCTTTTACTCTGGTGTTTCAGTAGAACCATGCTCCATCATGTGAATGTGTACTATTTGGCTC--TTTTTTTTTTCTTTTAAATTTGGTCAGAGAATAAGGTATTAAAGAACCACAGTTTTCG</genome_strand>
        <mrna_strand>GATCCCAAAAAATTCTCTAAACTAAAAAGATCAATTTTTTTTCTTGAAAAATTTCAATGGCGAAAAAAGCAGTATTAATTGGAATCAATTATCCAGGAACAAAAGCAGAACTTAGAGGTTGTATTAACGATGTTAAGCGAATGTACAATTGTTTACTTAATCGTTACGGATTTGCTGAGGAAGACATTACTGTTCTTATAGATACTGATGATTCTTACACACAACCAACTGGTCGGAATATACGTAAAGCTTTATCGGATCTTGTTGGATCTGCTGAATCAGGGGATTGTTTGTTTGTGCATTACAGTGGACATGGAACTAGGTTACCTGCTGAAACGGGTGAAGAAGATGATACTGGTTTTGATGAGTGTATTGTTCCTTGTGATATGAATCTTATTACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATGATTTTAGAGAGCTCGTTGACAAAGTTCCTGAAGGTTGCCAGATCACAATTGTATCTGACTCATGCCACAGTGGTGGCCTCATTGACAAAGCTAAAGAGCAGATAGGGGAGAGCCACAAGCAAGGTGATGACGATGAAGGCCATGGATCTGGTTTTGGATTCAAGAATTTCTTACGTCGAAATGTTGAAGATGCATTTGAATCCC-GGGTATCCACCTTCCAGGTCGCCACCATCGCCGTGAGGAAGAAGAGGAGAATTTTGCTGAGAGTAGTGTCATTGAGACGGAAGACGGTGATCAAGTTCATGTGAAGAGCAAGTCCTTGCCTCTTTCCACTCTCATCGAGATACTTAAGCAGAAAACTGGTAAGGATGATATTGATGTTGGGAAACTTAGGCCAACACTCTTTGACGTCTTTGGCGAAGATGCAAGTCCTAAGGTGAAGAAATTCATGAAAATCATTTTTAACAAGCTACAAAAGAATAACGAGCAGGGTGGAGGCGGCGGGTTCATGGGTATGGTTGGTAACTTGGCTCAAGAGTTTCTGAAACAGAAACTTGATGAAAATGATGAGAGCTATGCAAAACCGGCCATGGAAACACACGTCGAAGTTAAACAGGAGGTTTATGCCGGTTCAGGTAATAGAGGTCTTCCAGACAGTGGCATTCTCGTCAGTGGGTGCCAAACAGACCAAACATCTGCGGATGCAACCCCTGCAGGCGGAGAGTCTTATGGTGCTCTAAGCAACGCAATTCAGGAAATCCTGGCTGAATCAGATGGTCCAGTCACCAATGAGGAGCTTGTTAGCAAGGCTAGGAAAAAGATGCAGAAACAAGGCTTCACACAACGCCCAGGCCTCTACTGCGATGATCATCACGTTGATGCTCCTTTTGTTTGTTGATTCTACTGTGCTATGCCTTCTCGAGTAGCTGTTGAAATACGACTGTGAAGTCAACGAGGTGTTATATAGCTACATCCTTTTGTGTATTTGTGTGATTGTTTGTGCTAATGTTGGAGTAGCTCTTTTACTCTGGTGTTTCAGTAGAACCATGCTCCATCATGTGAATGTGTACTATTTGGCTCTGTTTTTTTTTTCTTTTAAATTTGGTCAGAGAATAAGGTATTAAAGAACCACAGTTTTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E221447" ref_strand="+" ref_description="SGN-E221447 [cLEL-10-H6](-)">
      <seq>gtcttatggtgctctaagcaacgcaattcaggaaatcctggccgaatcagatggtccagtcaaccaatgaggagcttgttagcaaggctaggaaaaagatgcagaaacaaggcttcacacaacgcccaggcctctactgcgatgatcatcacgttgatgctccttttgtttgttgattctactgtgctatgccttctcgagtagctgttgaaatacgactgtgaagtcaacgaggtgttatatagctacatccttttgtgtatttgtgtgattgtttgtgctaatgttggagtagctcttttactctggtgtttcagtagaaccatgctccatcatgtgaatgtgtactatttggctcttttttttttcttttaaatttggtcagagaataaggtattaaagaaccaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="-" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="1493" stop="486"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1193" g_stop="786" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="409" r_length="409" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="410" polyA_stop="428"/>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="-" ref_id="SGN-E221447" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E221447" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1193" e_stop="786"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTATGGTGCTCTAAGCAACGCAATTCAGGAAATCCTGGCCGAATCAGATGGTCCAGTC-ACCAATGAGGAGCTTGTTAGCAAGGCTAGGAAAAAGATGCAGAAACAAGGCTTCACACAACGCCCAGGCCTCTACTGCGATGATCATCACGTTGATGCTCCTTTTGTTTGTTGATTCTACTGTGCTATGCCTTCTCGAGTAGCTGTTGAAATACGACTGTGAAGTCAACGAGGTGTTATATAGCTACATCCTTTTGTGTATTTGTGTGATTGTTTGTGCTAATGTTGGAGTAGCTCTTTTACTCTGGTGTTTCAGTAGAACCATGCTCCATCATGTGAATGTGTACTATTTGGCTCTTTTTTTTTTCTTTTAAATTTGGTCAGAGAATAAGGTATTAAAGAACCACA</genome_strand>
        <mrna_strand>GTCTTATGGTGCTCTAAGCAACGCAATTCAGGAAATCCTGGCCGAATCAGATGGTCCAGTCAACCAATGAGGAGCTTGTTAGCAAGGCTAGGAAAAAGATGCAGAAACAAGGCTTCACACAACGCCCAGGCCTCTACTGCGATGATCATCACGTTGATGCTCCTTTTGTTTGTTGATTCTACTGTGCTATGCCTTCTCGAGTAGCTGTTGAAATACGACTGTGAAGTCAACGAGGTGTTATATAGCTACATCCTTTTGTGTATTTGTGTGATTGTTTGTGCTAATGTTGGAGTAGCTCTTTTACTCTGGTGTTTCAGTAGAACCATGCTCCATCATGTGAATGTGTACTATTTGGCTCTTTTTTTTTTCTTTTAAATTTGGTCAGAGAATAAGGTATTAAAGAACCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E222019" ref_strand="+" ref_description="SGN-E222019 [cLEL-10-H6](-)">
      <seq>gtcttatggtgctctaagcaacgcaattcaggaaatcctggccgaatcagatggtccagtcaccaatgaggagcttgttagcaaggctaggaaaaagatgcagaaacaaggcttcacacaacgcccaggcctctactgcgatgatcatcacgttgatgctccttttgtttgttgattctactgtgctatgccttctcgagtagctgttgaaatacgactgtgaagtcaacgaggtgttatatagctacatccttttgtgtatttgtgtgattgtttgtgctaatgttggagtagctcttttactctggtgtttcagtagaaccatgctccatcatgtgaatgtgtactatttggctcttttttttttcttttaaatttggtcagagaataaggtattaaagaccccaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="-" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="1493" stop="486"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1193" g_stop="786" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="407" r_length="407" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="408" polyA_stop="427"/>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="-" ref_id="SGN-E222019" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E222019" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1193" e_stop="786"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTATGGTGCTCTAAGCAACGCAATTCAGGAAATCCTGGCCGAATCAGATGGTCCAGTCACCAATGAGGAGCTTGTTAGCAAGGCTAGGAAAAAGATGCAGAAACAAGGCTTCACACAACGCCCAGGCCTCTACTGCGATGATCATCACGTTGATGCTCCTTTTGTTTGTTGATTCTACTGTGCTATGCCTTCTCGAGTAGCTGTTGAAATACGACTGTGAAGTCAACGAGGTGTTATATAGCTACATCCTTTTGTGTATTTGTGTGATTGTTTGTGCTAATGTTGGAGTAGCTCTTTTACTCTGGTGTTTCAGTAGAACCATGCTCCATCATGTGAATGTGTACTATTTGGCTCTTTTTTTTTTCTTTTAAATTTGGTCAGAGAATAAGGTATTAAAGAACCACA</genome_strand>
        <mrna_strand>GTCTTATGGTGCTCTAAGCAACGCAATTCAGGAAATCCTGGCCGAATCAGATGGTCCAGTCACCAATGAGGAGCTTGTTAGCAAGGCTAGGAAAAAGATGCAGAAACAAGGCTTCACACAACGCCCAGGCCTCTACTGCGATGATCATCACGTTGATGCTCCTTTTGTTTGTTGATTCTACTGTGCTATGCCTTCTCGAGTAGCTGTTGAAATACGACTGTGAAGTCAACGAGGTGTTATATAGCTACATCCTTTTGTGTATTTGTGTGATTGTTTGTGCTAATGTTGGAGTAGCTCTTTTACTCTGGTGTTTCAGTAGAACCATGCTCCATCATGTGAATGTGTACTATTTGGCTCTTTTTTTTTTCTTTTAAATTTGGTCAGAGAATAAGGTATTAAAG-ACCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E567419" ref_strand="+" ref_description="SGN-E567419 [11542]">
      <seq>cggncatggaaacacacgttgaaggtaaacaggaggtttatgccggttcaggcaatagaggtcttccagacagtggcattctcgtcagtgggtgccaaacagaccaaacatctgcagatgccacccctgcaggcggagattcttatggtgctctaagcaacgcaattcaggaaatcctagctgaatcagatggtccagtcaccaatgaggaacttgttagcaaggctaggaaaaagatgcagaaacaaggcttcacacaacgtccaggcctctactgcgatgatcatcatgttgatgctcctctttgtttgttgattctgctgtgctatgccttctcgagtagctgttgaaatacgactgtgaagtcaacgaggtgttatataactacatccttttgtgtatttgtgtgattgtttgtgcttatgttggagtagctcttctactctggtgttgcagaagaaccattctccatcatgtgaatgtgtactatttggctctgtttttttatcttttaaatttggtcagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="-" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="1632" stop="508"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1332" g_stop="808" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="527" r_length="527" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="-" ref_id="SGN-E567419" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E567419" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1332" e_stop="808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCCATGGAAACACACGTTGAAGGTAAACAGGAGGTTTATGCCGGTTCAGGTAATAGAGGTCTTCCAGACAGTGGCATTCTCGTCAGTGGGTGCCAAACAGACCAAACATCTGCGGATGCAACCCCTGCAGGCGGAGAGTCTTATGGTGCTCTAAGCAACGCAATTCAGGAAATCCTGGCCGAATCAGATGGTCCAGTCACCAATGAGGAGCTTGTTAGCAAGGCTAGGAAAAAGATGCAGAAACAAGGCTTCACACAACGCCCAGGCCTCTACTGCGATGATCATCACGTTGATGCTCCT-TTTGTTTGTTGATTCTACTGTGCTATGCCTTCTCGAGTAGCTGTTGAAATACGACTGTGAAGTCAACGAGGTGTTATATAGCTACATCCTTTTGTGTATTTGTGTGATTGTTTGTGCTAATGTTGGAGTAGCTCTTTTACTCTGGTGTTTCAGTAGAACCATGCTCCATCATGTGAATGTGTACTATTTGGCTCT-TTTTTTTTTCTTTTAAATTTGGTCAGAG</genome_strand>
        <mrna_strand>CGGNCATGGAAACACACGTTGAAGGTAAACAGGAGGTTTATGCCGGTTCAGGCAATAGAGGTCTTCCAGACAGTGGCATTCTCGTCAGTGGGTGCCAAACAGACCAAACATCTGCAGATGCCACCCCTGCAGGCGGAGATTCTTATGGTGCTCTAAGCAACGCAATTCAGGAAATCCTAGCTGAATCAGATGGTCCAGTCACCAATGAGGAACTTGTTAGCAAGGCTAGGAAAAAGATGCAGAAACAAGGCTTCACACAACGTCCAGGCCTCTACTGCGATGATCATCATGTTGATGCTCCTCTTTGTTTGTTGATTCTGCTGTGCTATGCCTTCTCGAGTAGCTGTTGAAATACGACTGTGAAGTCAACGAGGTGTTATATAACTACATCCTTTTGTGTATTTGTGTGATTGTTTGTGCTTATGTTGGAGTAGCTCTTCTACTCTGGTGTTGCAGAAGAACCATTCTCCATCATGTGAATGTGTACTATTTGGCTCTGTTTTTTTATCTTTTAAATTTGGTCAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E236344" ref_strand="+" ref_description="SGN-E236344 [cLED-13-G13]">
      <seq>ctcaagagtttctgaaacagaaacttgatgaaaatgatgagagctatgcaaaaccggccatggaaacacacgttgaaggtaaacaggaggtttatgccggttcaggtaatagaggtcttccagacagtggcattctcgtcagtgggtgccaaacagaccaaacatctgcggatgcaacccctgcaggcggagagtcttatggtgctctaagcaacgcaattcaggaaatcctggccgaatcagatggtccagtcaccaatgaggagcttgttagcaaggctaggaaaaagatgcagaaacaaggcttcacacaacgcccaggcctctactgcgatgatcatcacgttgatgctccttttgtttgttgattctactgtgctatgccttctcgagtagctgttgaaatacgactgtgaagtcaacgaggtgttatatagctaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="-" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="1686" stop="645"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1386" g_stop="945" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="442" r_length="442" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="-" ref_id="SGN-E236344" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E236344" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1386" e_stop="945"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAAGAGTTTCTGAAACAGAAACTTGATGAAAATGATGAGAGCTATGCAAAACCGGCCATGGAAACACACGTTGAAGGTAAACAGGAGGTTTATGCCGGTTCAGGTAATAGAGGTCTTCCAGACAGTGGCATTCTCGTCAGTGGGTGCCAAACAGACCAAACATCTGCGGATGCAACCCCTGCAGGCGGAGAGTCTTATGGTGCTCTAAGCAACGCAATTCAGGAAATCCTGGCCGAATCAGATGGTCCAGTCACCAATGAGGAGCTTGTTAGCAAGGCTAGGAAAAAGATGCAGAAACAAGGCTTCACACAACGCCCAGGCCTCTACTGCGATGATCATCACGTTGATGCTCCTTTTGTTTGTTGATTCTACTGTGCTATGCCTTCTCGAGTAGCTGTTGAAATACGACTGTGAAGTCAACGAGGTGTTATATAGCTACA</genome_strand>
        <mrna_strand>CTCAAGAGTTTCTGAAACAGAAACTTGATGAAAATGATGAGAGCTATGCAAAACCGGCCATGGAAACACACGTTGAAGGTAAACAGGAGGTTTATGCCGGTTCAGGTAATAGAGGTCTTCCAGACAGTGGCATTCTCGTCAGTGGGTGCCAAACAGACCAAACATCTGCGGATGCAACCCCTGCAGGCGGAGAGTCTTATGGTGCTCTAAGCAACGCAATTCAGGAAATCCTGGCCGAATCAGATGGTCCAGTCACCAATGAGGAGCTTGTTAGCAAGGCTAGGAAAAAGATGCAGAAACAAGGCTTCACACAACGCCCAGGCCTCTACTGCGATGATCATCACGTTGATGCTCCTTTTGTTTGTTGATTCTACTGTGCTATGCCTTCTCGAGTAGCTGTTGAAATACGACTGTGAAGTCAACGAGGTGTTATATAGCTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E598336" ref_strand="+" ref_description="SGN-E598336 [74007]">
      <seq>ggaacttgttagcaaggctaggaaaaagatgcagaaacaaggcttcacacaacgtccaggcctctactgcgatgatcatcatgttgatgctccttttgtttgtgattctgctgtgctatgccttctcgcagtagctgttgaaatacggactgtgaagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="-" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="1424" stop="667"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1124" g_stop="967" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="-" ref_id="SGN-E598336" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>158</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E598336" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1124" e_stop="967"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGCTTGTTAGCAAGGCTAGGAAAAAGATGCAGAAACAAGGCTTCACACAACGCCCAGGCCTCTACTGCGATGATCATCACGTTGATGCTCCTTTTGTTTGTTGATTCTACTGTGCTATGCCTTCTCG-AGTAGCTGTTGAAATAC-GACTGTGAAGTC</genome_strand>
        <mrna_strand>GGAACTTGTTAGCAAGGCTAGGAAAAAGATGCAGAAACAAGGCTTCACACAACGTCCAGGCCTCTACTGCGATGATCATCATGTTGATGCTCCTTTTGTTTG-TGATTCTGCTGTGCTATGCCTTCTCGCAGTAGCTGTTGAAATACGGACTGTGAAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E614712" ref_strand="+" ref_description="SGN-E614712 [64502]">
      <seq>aagaagaggagaactttgctgagagtagtgtgattgagacggaagacggtgatcaagttcatgtgaagagcaagtccttgcctctttccactctaatcgagatacttaagcagaaaaccggtaaggatgacattgatgttgggaaacttaggccaacactctttgacgtctttggtgaagatgcaagtcctaaggtgaagaagttcatgaaagtcatttttaacaagctacaaaagaataacgagcagggtggaggcggtgggttcatgggtatggttggtaacttggctcaagagtttctgaaacagaaacttgatgaaaatgatgagagctatgctaaaccggccatggaaacacacgttgaaggtaaacaggaggtttatgccggttcaggcaatagaggtcttccagacagtggcattctcgtcagtgggtgccaaacagaccaaacatctgcagatgccacccctgcaggcggagattcttatggtgctctaagcaacgcaattcaggaaatcctagctgaatcagatggtccagtcaccaatgaggaacttgttagcaacggctaggaaaaagatgcagaaacaaggcttcacacaacgtccaggcctctactgcgatgatcatcatgttgatgctccttttgtttgttcgattctgctgtgctatgccttctcgagggggggcccggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="-" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="1974" stop="694"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1674" g_stop="995" g_length="680"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="682" r_length="682" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="-" ref_id="SGN-E614712" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E614712" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1674" e_stop="995"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGAGGAGAATTTTGCTGAGAGTAGTGTGATTGAGACGGAAGACGGTGATCAAGTTCATGTGAAGAGCAAGTCCTTGCCTCTTTCCACTCTCATCGAGATACTTAAGCAGAAAACTGGTAAGGATGATATTGATGTTGGGAAACTTAGGCCAACACTCTTTGACGTCTTTGGCGAAGATGCAAGTCCTAAGGTGAAGAAATTCATGAAAATCATTTTTAACAAGCTACAAAAGAATAACGAGCAGGGTGGAGGCGGCGGGTTCATGGGTATGGTTGGTAACTTGGCTCAAGAGTTTCTGAAACAGAAACTTGATGAAAATGATGAGAGCTATGCAAAACCGGCCATGGAAACACACGTTGAAGGTAAACAGGAGGTTTATGCCGGTTCAGGTAATAGAGGTCTTCCAGACAGTGGCATTCTCGTCAGTGGGTGCCAAACAGACCAAACATCTGCGGATGCAACCCCTGCAGGCGGAGAGTCTTATGGTGCTCTAAGCAACGCAATTCAGGAAATCCTGGCCGAATCAGATGGTCCAGTCACCAATGAGGAGCTTGTTAGCAA-GGCTAGGAAAAAGATGCAGAAACAAGGCTTCACACAACGCCCAGGCCTCTACTGCGATGATCATCACGTTGATGCTCCTTTTGTTTGTT-GATTCTACTGTGCTATGCCTTCTCGA</genome_strand>
        <mrna_strand>AAGAAGAGGAGAACTTTGCTGAGAGTAGTGTGATTGAGACGGAAGACGGTGATCAAGTTCATGTGAAGAGCAAGTCCTTGCCTCTTTCCACTCTAATCGAGATACTTAAGCAGAAAACCGGTAAGGATGACATTGATGTTGGGAAACTTAGGCCAACACTCTTTGACGTCTTTGGTGAAGATGCAAGTCCTAAGGTGAAGAAGTTCATGAAAGTCATTTTTAACAAGCTACAAAAGAATAACGAGCAGGGTGGAGGCGGTGGGTTCATGGGTATGGTTGGTAACTTGGCTCAAGAGTTTCTGAAACAGAAACTTGATGAAAATGATGAGAGCTATGCTAAACCGGCCATGGAAACACACGTTGAAGGTAAACAGGAGGTTTATGCCGGTTCAGGCAATAGAGGTCTTCCAGACAGTGGCATTCTCGTCAGTGGGTGCCAAACAGACCAAACATCTGCAGATGCCACCCCTGCAGGCGGAGATTCTTATGGTGCTCTAAGCAACGCAATTCAGGAAATCCTAGCTGAATCAGATGGTCCAGTCACCAATGAGGAACTTGTTAGCAACGGCTAGGAAAAAGATGCAGAAACAAGGCTTCACACAACGTCCAGGCCTCTACTGCGATGATCATCATGTTGATGCTCCTTTTGTTTGTTCGATTCTGCTGTGCTATGCCTTCTCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E579961" ref_strand="+" ref_description="SGN-E579961 [87095]">
      <seq>atgacattgatgttgggaaacttaggccaacgctctttgacgtctttggtgaagatgcaagtcctaaggtgaagaagttcatgaaagtcatttttaacaagctacaaaagaataacgagcagggtggaggcagtgggttcatgggtatggttggtaacttggctcaggagtttctgaaacagaaacttgatgaaaatgatgagagctatgctaaaccggccatggaaacacacgttgaaggtaaacaggaagtttatgccggttcaggtaatagaggtcttccagacagtggcattcttgtcagtgggtgccaaacagaccaaacatctgcagatgccacccctgcaggtggagattcttatggtgctctaagcaacgcaattcaggaaatcctagctgaatcagatggtccagtcagcaatgaggaacttgttagcaaggctaggaaaaagatgcagaaacaaggcttcacacaacgtccaggcctctactgcgatgatcatcatgttgatgctccttttgtttgttgattctgctgtgctatgcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="-" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="1848" stop="700"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1548" g_stop="1000" g_length="549"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="549" r_length="549" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="-" ref_id="SGN-E579961" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E579961" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1548" e_stop="1000"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATATTGATGTTGGGAAACTTAGGCCAACACTCTTTGACGTCTTTGGCGAAGATGCAAGTCCTAAGGTGAAGAAATTCATGAAAATCATTTTTAACAAGCTACAAAAGAATAACGAGCAGGGTGGAGGCGGCGGGTTCATGGGTATGGTTGGTAACTTGGCTCAAGAGTTTCTGAAACAGAAACTTGATGAAAATGATGAGAGCTATGCAAAACCGGCCATGGAAACACACGTTGAAGGTAAACAGGAGGTTTATGCCGGTTCAGGTAATAGAGGTCTTCCAGACAGTGGCATTCTCGTCAGTGGGTGCCAAACAGACCAAACATCTGCGGATGCAACCCCTGCAGGCGGAGAGTCTTATGGTGCTCTAAGCAACGCAATTCAGGAAATCCTGGCCGAATCAGATGGTCCAGTCACCAATGAGGAGCTTGTTAGCAAGGCTAGGAAAAAGATGCAGAAACAAGGCTTCACACAACGCCCAGGCCTCTACTGCGATGATCATCACGTTGATGCTCCTTTTGTTTGTTGATTCTACTGTGCTATGCCTT</genome_strand>
        <mrna_strand>ATGACATTGATGTTGGGAAACTTAGGCCAACGCTCTTTGACGTCTTTGGTGAAGATGCAAGTCCTAAGGTGAAGAAGTTCATGAAAGTCATTTTTAACAAGCTACAAAAGAATAACGAGCAGGGTGGAGGCAGTGGGTTCATGGGTATGGTTGGTAACTTGGCTCAGGAGTTTCTGAAACAGAAACTTGATGAAAATGATGAGAGCTATGCTAAACCGGCCATGGAAACACACGTTGAAGGTAAACAGGAAGTTTATGCCGGTTCAGGTAATAGAGGTCTTCCAGACAGTGGCATTCTTGTCAGTGGGTGCCAAACAGACCAAACATCTGCAGATGCCACCCCTGCAGGTGGAGATTCTTATGGTGCTCTAAGCAACGCAATTCAGGAAATCCTAGCTGAATCAGATGGTCCAGTCAGCAATGAGGAACTTGTTAGCAAGGCTAGGAAAAAGATGCAGAAACAAGGCTTCACACAACGTCCAGGCCTCTACTGCGATGATCATCATGTTGATGCTCCTTTTGTTTGTTGATTCTGCTGTGCTATGCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E341713" ref_strand="+" ref_description="SGN-E341713 [cTOF-9-O20]">
      <seq>accttccaggtcgccaccatcgccgtgaggaagaagaggagaattttgctgagagtagtgtgattgagacggaagacggtgatcaagttcatgtgaagagcaagtccttgcctctttccactctcatcgagatacttaagcagaaaactggtaaggatgatattgatgttgggaaacttaggccaacactctttgacgtctttggcgaagatgcaagtcctaaggtgaagaaattcatgaaaatcatttttaacaagctacaaaagaataacgagcagggtggaggcggcgggttcatgggtatggttggtaacttggctcaagagtttctgaaacagaaacttgatgaaaatgatgagagctatgcaaaaccggccatggaaacacacgttgaaggtaaacaggaggtttatgccggttcaggtaatagaggtcttccagacagtggcattctcgtcagtgggtgccaaacagaccaaacatctgcggatgcaacccctgcaggcggagagtcttatggtgctctaagcaacgcaattcaggaaatcctggccgaatcagatggtccagtcaccaatgaggagcttgttagcaaggctaggaaaaagatgcagaaacaaggcttcacacaacgcccaggcctctactgcgatgatcatcacgttgatgctcctttttgtttgttgattctactgtgctatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="-" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="2004" stop="703"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1704" g_stop="1003" g_length="702"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="703" r_length="703" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="-" ref_id="SGN-E341713" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341713" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1704" e_stop="1003"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTTCCAGGTCGCCACCATCGCCGTGAGGAAGAAGAGGAGAATTTTGCTGAGAGTAGTGTGATTGAGACGGAAGACGGTGATCAAGTTCATGTGAAGAGCAAGTCCTTGCCTCTTTCCACTCTCATCGAGATACTTAAGCAGAAAACTGGTAAGGATGATATTGATGTTGGGAAACTTAGGCCAACACTCTTTGACGTCTTTGGCGAAGATGCAAGTCCTAAGGTGAAGAAATTCATGAAAATCATTTTTAACAAGCTACAAAAGAATAACGAGCAGGGTGGAGGCGGCGGGTTCATGGGTATGGTTGGTAACTTGGCTCAAGAGTTTCTGAAACAGAAACTTGATGAAAATGATGAGAGCTATGCAAAACCGGCCATGGAAACACACGTTGAAGGTAAACAGGAGGTTTATGCCGGTTCAGGTAATAGAGGTCTTCCAGACAGTGGCATTCTCGTCAGTGGGTGCCAAACAGACCAAACATCTGCGGATGCAACCCCTGCAGGCGGAGAGTCTTATGGTGCTCTAAGCAACGCAATTCAGGAAATCCTGGCCGAATCAGATGGTCCAGTCACCAATGAGGAGCTTGTTAGCAAGGCTAGGAAAAAGATGCAGAAACAAGGCTTCACACAACGCCCAGGCCTCTACTGCGATGATCATCACGTTGATGCTCC-TTTTGTTTGTTGATTCTACTGTGCTATGC</genome_strand>
        <mrna_strand>ACCTTCCAGGTCGCCACCATCGCCGTGAGGAAGAAGAGGAGAATTTTGCTGAGAGTAGTGTGATTGAGACGGAAGACGGTGATCAAGTTCATGTGAAGAGCAAGTCCTTGCCTCTTTCCACTCTCATCGAGATACTTAAGCAGAAAACTGGTAAGGATGATATTGATGTTGGGAAACTTAGGCCAACACTCTTTGACGTCTTTGGCGAAGATGCAAGTCCTAAGGTGAAGAAATTCATGAAAATCATTTTTAACAAGCTACAAAAGAATAACGAGCAGGGTGGAGGCGGCGGGTTCATGGGTATGGTTGGTAACTTGGCTCAAGAGTTTCTGAAACAGAAACTTGATGAAAATGATGAGAGCTATGCAAAACCGGCCATGGAAACACACGTTGAAGGTAAACAGGAGGTTTATGCCGGTTCAGGTAATAGAGGTCTTCCAGACAGTGGCATTCTCGTCAGTGGGTGCCAAACAGACCAAACATCTGCGGATGCAACCCCTGCAGGCGGAGAGTCTTATGGTGCTCTAAGCAACGCAATTCAGGAAATCCTGGCCGAATCAGATGGTCCAGTCACCAATGAGGAGCTTGTTAGCAAGGCTAGGAAAAAGATGCAGAAACAAGGCTTCACACAACGCCCAGGCCTCTACTGCGATGATCATCACGTTGATGCTCCTTTTTGTTTGTTGATTCTACTGTGCTATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E329560" ref_strand="+" ref_description="SGN-E329560 [cTOD-11-D19]">
      <seq>tcgccgtgaggaagaagaggagaattttgctgagagtagtgtgattgagacggaagacggtgatcaagttcatgtgaagagcaagtccttgcctctttccactctcatcgagatacttaagcagaaaactggtaaggatgatattgatgttgggaaacttaggccaacactctttgacgtctttggcgaagatgcaagtcctaaggtgaagaaattcatgaaaatcatttttaacaagctacaaaagaataacgagcagggtggaggcggcgggttcatgggtatggttggtaacttggctcaagagtttctgaaacagaaacttgatgaaaatgatgagagctatgcaaaaccggccatggaaacacacgttgaaggtaaacaggaggtttatgccggttcaggtaatagaggtcttccagacagtggcattctcgtcagtgggtgccaaacagaccaaacatctgcggatgcaacccctgcaggcggagagtcttatggtgctctaagcaacgcaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="-" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="1985" stop="866"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1685" g_stop="1166" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="520" r_length="520" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="-" ref_id="SGN-E329560" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329560" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1685" e_stop="1166"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCCGTGAGGAAGAAGAGGAGAATTTTGCTGAGAGTAGTGTGATTGAGACGGAAGACGGTGATCAAGTTCATGTGAAGAGCAAGTCCTTGCCTCTTTCCACTCTCATCGAGATACTTAAGCAGAAAACTGGTAAGGATGATATTGATGTTGGGAAACTTAGGCCAACACTCTTTGACGTCTTTGGCGAAGATGCAAGTCCTAAGGTGAAGAAATTCATGAAAATCATTTTTAACAAGCTACAAAAGAATAACGAGCAGGGTGGAGGCGGCGGGTTCATGGGTATGGTTGGTAACTTGGCTCAAGAGTTTCTGAAACAGAAACTTGATGAAAATGATGAGAGCTATGCAAAACCGGCCATGGAAACACACGTTGAAGGTAAACAGGAGGTTTATGCCGGTTCAGGTAATAGAGGTCTTCCAGACAGTGGCATTCTCGTCAGTGGGTGCCAAACAGACCAAACATCTGCGGATGCAACCCCTGCAGGCGGAGAGTCTTATGGTGCTCTAAGCAACGCAATT</genome_strand>
        <mrna_strand>TCGCCGTGAGGAAGAAGAGGAGAATTTTGCTGAGAGTAGTGTGATTGAGACGGAAGACGGTGATCAAGTTCATGTGAAGAGCAAGTCCTTGCCTCTTTCCACTCTCATCGAGATACTTAAGCAGAAAACTGGTAAGGATGATATTGATGTTGGGAAACTTAGGCCAACACTCTTTGACGTCTTTGGCGAAGATGCAAGTCCTAAGGTGAAGAAATTCATGAAAATCATTTTTAACAAGCTACAAAAGAATAACGAGCAGGGTGGAGGCGGCGGGTTCATGGGTATGGTTGGTAACTTGGCTCAAGAGTTTCTGAAACAGAAACTTGATGAAAATGATGAGAGCTATGCAAAACCGGCCATGGAAACACACGTTGAAGGTAAACAGGAGGTTTATGCCGGTTCAGGTAATAGAGGTCTTCCAGACAGTGGCATTCTCGTCAGTGGGTGCCAAACAGACCAAACATCTGCGGATGCAACCCCTGCAGGCGGAGAGTCTTATGGTGCTCTAAGCAACGCAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E690897" ref_strand="+" ref_description="SGN-E690897 [LH_Ea04L07]">
      <seq>cattaaaaagatcaaatttttttcttgaaaaatttcaatggcgaaaaaagcagtattaattggaatcaattatccaggaacaaaagcagaacttagaggttgtattaacgatgttaagcgaatgtacaattgtttacttaatcgttacggatttgctgaggaagacattactgttcttatagatactgatgattcttacacacaaccaactggtcggaatatacgtaaagctttatcggatcttgttggatctgctgaatcaggggattgtttgtttgtgcattacagtggacatggaactaggttacctgctgaaacgggtgaagaagatgatactggttttgatgagtgtattgttccttgtgatatgaatcttattacagatgatgattttagagagctcgttgacaaagttcctgaaggttgccagatcacaattgtatctgactcatgccacagtggtggcctcattgacaaagctaaagagcagataggggagagccacaagcaaggtgatgacgatgaaggccatggatctggttttggattcaagaatttcttacgtcgaaatgttgaagatgcatttgaatcccggggtatccaccttccaggtcgccaccatcgccgtgaggaagaagaggagaattttgctgagagtagtgtgattgagacggaagacggtgatcaagttcatgtgaagagcaagtccttgcctctttccactctcatcgagatacttaagcagaaaactggtaaggatgatattgatgttgggaaacttangccaacactctttgacgtctttggcgaagatgcaagtcctaaggtgaagaaattcatgaaagtcatttttaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="-" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="3975" stop="1150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3676" g_stop="3294" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="383" r_length="383" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3293" i_stop="1924" i_length="1370">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1923" g_stop="1450" g_length="474"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="857" r_length="474" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="-" ref_id="SGN-E690897" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>857</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E690897" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3676" e_stop="3294"/>
          <exon e_start="1923" e_stop="1450"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTAAAAAGATCAATTTTTTTTCTTGAAAAATTTCAATGGCGAAAAAAGCAGTATTAATTGGAATCAATTATCCAGGAACAAAAGCAGAACTTAGAGGTTGTATTAACGATGTTAAGCGAATGTACAATTGTTTACTTAATCGTTACGGATTTGCTGAGGAAGACATTACTGTTCTTATAGATACTGATGATTCTTACACACAACCAACTGGTCGGAATATACGTAAAGCTTTATCGGATCTTGTTGGATCTGCTGAATCAGGGGATTGTTTGTTTGTGCATTACAGTGGACATGGAACTAGGTTACCTGCTGAAACGGGTGAAGAAGATGATACTGGTTTTGATGAGTGTATTGTTCCTTGTGATATGAATCTTATTACAGGTAATTCAACATTTTTTTTTACTTAAACCGCTGTTTTTTAAGGATTTGGAGTAGGGGAAATGGGGCGGGGATTATGAGGTGGGGAATCGAGTTGTCAGGTAGTCAATCGACTGAGCTATTTAGATTGTACTTGATCTAAATGATGGGTTTGTTCCAAGATTGTTTTTTTCTTTGTGTTTGTTGAATTATGTTGGGGGTTATTAGTTGTATTGGTTTGATTTAAATGATGGGTTTGTTCCAAAATTTGTTTTTTTTGTGTGTGGTATGCGTTTTAATGCAGCTACTTGAGCATTTCTTTGATCAAAATTAGGAATTGAATACTTAGGTAGTTAATCAACTGAGTTAGTAAGTCTGTACTTGATCTATATCATGAGTTTGTTAAAAAAATGTTTTTTTTTTGTGTGTTGTGTTGAATTTATTGGGGGTTTAGTTGTATTGCTTTGATTTGAAGTATGTATTTGCTCCAAAATTTGTTGTTTTTTGATTTTCTGTGTTGAGTACTTATATGGTTTGATCTAGATCATGGGTGTCTTCGAAAATTTGTTTTTTTTTAATGTGTTGTGTGTGTGATATGAATTTTATTGCAGGTATTTGTATTGCTTTGATCTAAATTTTGGGTTTGTTTCAAATTTCGCTTTTTGTTTGTTTGGGGTTGGGTGTTAGAGTTGATGTGGTAGGGTCTAGGAGATTGAGATCTTCAAATGGTTTTCTCAAAAAATGATCTTGAAAGGTTGAGTTGATCTGTTTTGATGATAATTCAGGTGGATCAAAGATATAAGGAGATTTGTAAAACGAGGAAATGGGATTTTAGAAATGAGAATTTGGGTTTCTAGAGTGATTGAAATAGTTGAATGGGGGACGCGTAACAGTTGGGAAAAAAGGAGGAGTGTAGTTTACTACATTGTGATACGAATCTCATATACAGGAACTTAATCATGGGTTGTTCCAAAATTTGTTTTTTTTTCCGTGTGTGTAAGTAATTTGTAGATTGGTATTAGACTAAGATCATCATAGAATATTGAGTAAAAAAGGATCTTGAAAGTGCTTAGTTGATCTGTTTTGATGATTATTGAGATGGATCCCGAGTTTTAGGAAGATTTGTGAAATGGGGAACTAGGATTTAGAAATGAGAATTTGGATCCAGAGCGATTAAAATTATTGAATGGTGGGAGATCAGAAAAAATTGGCAAAAAAAAGAGAATGGTCGTGATCCCACAAGTGGGATCTTGAAAGGCTAGGATGTACGCAAACCTTACCCTTGATTTCCGACACTTGGCTATACAGTTTATTACCTCTTGCTTATTTAATATTGGAAAAGTAACAGGCAATTAATATTGAACTGTTGGATGTGTTGTTTCATCCTTGATCAGATGATGATTTTAGAGAGCTCGTTGACAAAGTTCCTGAAGGTTGCCAGATCACAATTGTATCTGACTCATGCCACAGTGGTGGCCTCATTGACAAAGCTAAAGAGCAGATAGGGGAGAGCCACAAGCAAGGTGATGACGATGAAGGCCATGGATCTGGTTTTGGATTCAAGAATTTCTTACGTCGAAATGTTGAAGATGCATTTGAATCCCGGGGTATCCACCTTCCAGGTCGCCACCATCGCCGTGAGGAAGAAGAGGAGAATTTTGCTGAGAGTAGTGTGATTGAGACGGAAGACGGTGATCAAGTTCATGTGAAGAGCAAGTCCTTGCCTCTTTCCACTCTCATCGAGATACTTAAGCAGAAAACTGGTAAGGATGATATTGATGTTGGGAAACTTAGGCCAACACTCTTTGACGTCTTTGGCGAAGATGCAAGTCCTAAGGTGAAGAAATTCATGAAAATCATTTTTAACA</genome_strand>
        <mrna_strand>CATTAAAAAGATCAAATTTTTTTCTTGAAAAATTTCAATGGCGAAAAAAGCAGTATTAATTGGAATCAATTATCCAGGAACAAAAGCAGAACTTAGAGGTTGTATTAACGATGTTAAGCGAATGTACAATTGTTTACTTAATCGTTACGGATTTGCTGAGGAAGACATTACTGTTCTTATAGATACTGATGATTCTTACACACAACCAACTGGTCGGAATATACGTAAAGCTTTATCGGATCTTGTTGGATCTGCTGAATCAGGGGATTGTTTGTTTGTGCATTACAGTGGACATGGAACTAGGTTACCTGCTGAAACGGGTGAAGAAGATGATACTGGTTTTGATGAGTGTATTGTTCCTTGTGATATGAATCTTATTACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATGATTTTAGAGAGCTCGTTGACAAAGTTCCTGAAGGTTGCCAGATCACAATTGTATCTGACTCATGCCACAGTGGTGGCCTCATTGACAAAGCTAAAGAGCAGATAGGGGAGAGCCACAAGCAAGGTGATGACGATGAAGGCCATGGATCTGGTTTTGGATTCAAGAATTTCTTACGTCGAAATGTTGAAGATGCATTTGAATCCCGGGGTATCCACCTTCCAGGTCGCCACCATCGCCGTGAGGAAGAAGAGGAGAATTTTGCTGAGAGTAGTGTGATTGAGACGGAAGACGGTGATCAAGTTCATGTGAAGAGCAAGTCCTTGCCTCTTTCCACTCTCATCGAGATACTTAAGCAGAAAACTGGTAAGGATGATATTGATGTTGGGAAACTTANGCCAACACTCTTTGACGTCTTTGGCGAAGATGCAAGTCCTAAGGTGAAGAAATTCATGAAAGTCATTTTTAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E479247" ref_strand="+" ref_description="SGN-E479247 [cSTD-9-A20]">
      <seq>ttacacacaaccaactggtcggaatatacgtaaagctttatcggatcttgttggatctgctgaatcaggggattgtttgtttgtgcattatagtggacatggaactaggttacctgctgaaacgggtgaagaagatgatactggttttgatgagtgtattgttccttgtgatatgaatcttattacagatgatgattttagagagctcgttgataaagttcctgaaggttgccggatcacaattgtatccgactcatgccacagtggtggcctcattgacaaagctaaagagcagatcggggagagccacaagcaaggtgatgacgatgaaggccaaggatctggttttggattcaagaatttcttacgtcgaaatgttgaagatgcatttgaatcccggggtatccacattccacgtcgccaccatcgccgtgaggaagaagaggagaactttgctgagagtagtgtgattgagacggaagacggtgatcaagttcatgtgaagagcaagtccttgcctctttccactctaatcgagatacttaagcagaaaaccggtaaggatgacattgatgttgggaaacttangccaacactctttgacgtctttggtgaagatgcaagtcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="-" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="3781" stop="1185"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3481" g_stop="3294" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3293" i_stop="1924" i_length="1370">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1923" g_stop="1485" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="627" r_length="439" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="-" ref_id="SGN-E479247" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E479247" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3481" e_stop="3294"/>
          <exon e_start="1923" e_stop="1485"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACACACAACCAACTGGTCGGAATATACGTAAAGCTTTATCGGATCTTGTTGGATCTGCTGAATCAGGGGATTGTTTGTTTGTGCATTACAGTGGACATGGAACTAGGTTACCTGCTGAAACGGGTGAAGAAGATGATACTGGTTTTGATGAGTGTATTGTTCCTTGTGATATGAATCTTATTACAGGTAATTCAACATTTTTTTTTACTTAAACCGCTGTTTTTTAAGGATTTGGAGTAGGGGAAATGGGGCGGGGATTATGAGGTGGGGAATCGAGTTGTCAGGTAGTCAATCGACTGAGCTATTTAGATTGTACTTGATCTAAATGATGGGTTTGTTCCAAGATTGTTTTTTTCTTTGTGTTTGTTGAATTATGTTGGGGGTTATTAGTTGTATTGGTTTGATTTAAATGATGGGTTTGTTCCAAAATTTGTTTTTTTTGTGTGTGGTATGCGTTTTAATGCAGCTACTTGAGCATTTCTTTGATCAAAATTAGGAATTGAATACTTAGGTAGTTAATCAACTGAGTTAGTAAGTCTGTACTTGATCTATATCATGAGTTTGTTAAAAAAATGTTTTTTTTTTGTGTGTTGTGTTGAATTTATTGGGGGTTTAGTTGTATTGCTTTGATTTGAAGTATGTATTTGCTCCAAAATTTGTTGTTTTTTGATTTTCTGTGTTGAGTACTTATATGGTTTGATCTAGATCATGGGTGTCTTCGAAAATTTGTTTTTTTTTAATGTGTTGTGTGTGTGATATGAATTTTATTGCAGGTATTTGTATTGCTTTGATCTAAATTTTGGGTTTGTTTCAAATTTCGCTTTTTGTTTGTTTGGGGTTGGGTGTTAGAGTTGATGTGGTAGGGTCTAGGAGATTGAGATCTTCAAATGGTTTTCTCAAAAAATGATCTTGAAAGGTTGAGTTGATCTGTTTTGATGATAATTCAGGTGGATCAAAGATATAAGGAGATTTGTAAAACGAGGAAATGGGATTTTAGAAATGAGAATTTGGGTTTCTAGAGTGATTGAAATAGTTGAATGGGGGACGCGTAACAGTTGGGAAAAAAGGAGGAGTGTAGTTTACTACATTGTGATACGAATCTCATATACAGGAACTTAATCATGGGTTGTTCCAAAATTTGTTTTTTTTTCCGTGTGTGTAAGTAATTTGTAGATTGGTATTAGACTAAGATCATCATAGAATATTGAGTAAAAAAGGATCTTGAAAGTGCTTAGTTGATCTGTTTTGATGATTATTGAGATGGATCCCGAGTTTTAGGAAGATTTGTGAAATGGGGAACTAGGATTTAGAAATGAGAATTTGGATCCAGAGCGATTAAAATTATTGAATGGTGGGAGATCAGAAAAAATTGGCAAAAAAAAGAGAATGGTCGTGATCCCACAAGTGGGATCTTGAAAGGCTAGGATGTACGCAAACCTTACCCTTGATTTCCGACACTTGGCTATACAGTTTATTACCTCTTGCTTATTTAATATTGGAAAAGTAACAGGCAATTAATATTGAACTGTTGGATGTGTTGTTTCATCCTTGATCAGATGATGATTTTAGAGAGCTCGTTGACAAAGTTCCTGAAGGTTGCCAGATCACAATTGTATCTGACTCATGCCACAGTGGTGGCCTCATTGACAAAGCTAAAGAGCAGATAGGGGAGAGCCACAAGCAAGGTGATGACGATGAAGGCCATGGATCTGGTTTTGGATTCAAGAATTTCTTACGTCGAAATGTTGAAGATGCATTTGAATCCCGGGGTATCCACCTTCCAGGTCGCCACCATCGCCGTGAGGAAGAAGAGGAGAATTTTGCTGAGAGTAGTGTGATTGAGACGGAAGACGGTGATCAAGTTCATGTGAAGAGCAAGTCCTTGCCTCTTTCCACTCTCATCGAGATACTTAAGCAGAAAACTGGTAAGGATGATATTGATGTTGGGAAACTTAGGCCAACACTCTTTGACGTCTTTGGCGAAGATGCAAGTCC</genome_strand>
        <mrna_strand>TTACACACAACCAACTGGTCGGAATATACGTAAAGCTTTATCGGATCTTGTTGGATCTGCTGAATCAGGGGATTGTTTGTTTGTGCATTATAGTGGACATGGAACTAGGTTACCTGCTGAAACGGGTGAAGAAGATGATACTGGTTTTGATGAGTGTATTGTTCCTTGTGATATGAATCTTATTACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATGATTTTAGAGAGCTCGTTGATAAAGTTCCTGAAGGTTGCCGGATCACAATTGTATCCGACTCATGCCACAGTGGTGGCCTCATTGACAAAGCTAAAGAGCAGATCGGGGAGAGCCACAAGCAAGGTGATGACGATGAAGGCCAAGGATCTGGTTTTGGATTCAAGAATTTCTTACGTCGAAATGTTGAAGATGCATTTGAATCCCGGGGTATCCACATTCCACGTCGCCACCATCGCCGTGAGGAAGAAGAGGAGAACTTTGCTGAGAGTAGTGTGATTGAGACGGAAGACGGTGATCAAGTTCATGTGAAGAGCAAGTCCTTGCCTCTTTCCACTCTAATCGAGATACTTAAGCAGAAAACCGGTAAGGATGACATTGATGTTGGGAAACTTANGCCAACACTCTTTGACGTCTTTGGTGAAGATGCAAGTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E585449" ref_strand="+" ref_description="SGN-E585449 [67909]">
      <seq>tttanaaagttctctaaaccaaaaatttcaatggcaaaaaaggcagtgttaattggaatcaattatccaggaacaaaagcagaacttagaggttgtattaacgatgttaatcgaatgtacaattgtttacttaatcgtttcggatttgctgaggaagacattactgttcttatagatactgatgattcttatacacaaccaactggtcggaatatacgcaaagctttatcggatcttgttggatctgctgaatcaggggattgtttgtttgtgcattatagtggacatgggactaggttacctgctgaaacgggtgaagaagatgatactggttttgatgagtgtattgttccttgtgatatgaatcttattacagatgatgattttagagagctcgttgacaaagttcctgaaggttgccggatcacaattgtatctgactcatgccacagtggtggcctcattgacaaagctaaagagcagatcggggagagccacaagcaaggtgatgacgatgaaggccatggatctggttttggattcaagaatttcttacgtcgaaatgttgaagatgcatttgaatcccggggtatccacattccacgtcgccaccatcgccgtgaggaagcaagaggaggaacttttgctgagagtagtgtgattgagcacgggaagacggtgatcaaggttcatgtgaagagcaagtccttgcctctttccactctcatcgagatacttaaggcagaaaactggtaaggatgacacttgatgttgggaaacttaggccaacgctcttggacgtcttgggggaacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="-" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="3949" stop="1192"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3649" g_stop="3294" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="376" r_length="356" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3293" i_stop="1924" i_length="1370">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1923" g_stop="1493" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="815" r_length="439" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="-" ref_id="SGN-E585449" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>787</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E585449" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3649" e_stop="3294"/>
          <exon e_start="1923" e_stop="1493"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATTTCAATGGCGAAAAAAGCAGTATTAATTGGAATCAATTATCCAGGAACAAAAGCAGAACTTAGAGGTTGTATTAACGATGTTAAGCGAATGTACAATTGTTTACTTAATCGTTACGGATTTGCTGAGGAAGACATTACTGTTCTTATAGATACTGATGATTCTTACACACAACCAACTGGTCGGAATATACGTAAAGCTTTATCGGATCTTGTTGGATCTGCTGAATCAGGGGATTGTTTGTTTGTGCATTACAGTGGACATGGAACTAGGTTACCTGCTGAAACGGGTGAAGAAGATGATACTGGTTTTGATGAGTGTATTGTTCCTTGTGATATGAATCTTATTACAGGTAATTCAACATTTTTTTTTACTTAAACCGCTGTTTTTTAAGGATTTGGAGTAGGGGAAATGGGGCGGGGATTATGAGGTGGGGAATCGAGTTGTCAGGTAGTCAATCGACTGAGCTATTTAGATTGTACTTGATCTAAATGATGGGTTTGTTCCAAGATTGTTTTTTTCTTTGTGTTTGTTGAATTATGTTGGGGGTTATTAGTTGTATTGGTTTGATTTAAATGATGGGTTTGTTCCAAAATTTGTTTTTTTTGTGTGTGGTATGCGTTTTAATGCAGCTACTTGAGCATTTCTTTGATCAAAATTAGGAATTGAATACTTAGGTAGTTAATCAACTGAGTTAGTAAGTCTGTACTTGATCTATATCATGAGTTTGTTAAAAAAATGTTTTTTTTTTGTGTGTTGTGTTGAATTTATTGGGGGTTTAGTTGTATTGCTTTGATTTGAAGTATGTATTTGCTCCAAAATTTGTTGTTTTTTGATTTTCTGTGTTGAGTACTTATATGGTTTGATCTAGATCATGGGTGTCTTCGAAAATTTGTTTTTTTTTAATGTGTTGTGTGTGTGATATGAATTTTATTGCAGGTATTTGTATTGCTTTGATCTAAATTTTGGGTTTGTTTCAAATTTCGCTTTTTGTTTGTTTGGGGTTGGGTGTTAGAGTTGATGTGGTAGGGTCTAGGAGATTGAGATCTTCAAATGGTTTTCTCAAAAAATGATCTTGAAAGGTTGAGTTGATCTGTTTTGATGATAATTCAGGTGGATCAAAGATATAAGGAGATTTGTAAAACGAGGAAATGGGATTTTAGAAATGAGAATTTGGGTTTCTAGAGTGATTGAAATAGTTGAATGGGGGACGCGTAACAGTTGGGAAAAAAGGAGGAGTGTAGTTTACTACATTGTGATACGAATCTCATATACAGGAACTTAATCATGGGTTGTTCCAAAATTTGTTTTTTTTTCCGTGTGTGTAAGTAATTTGTAGATTGGTATTAGACTAAGATCATCATAGAATATTGAGTAAAAAAGGATCTTGAAAGTGCTTAGTTGATCTGTTTTGATGATTATTGAGATGGATCCCGAGTTTTAGGAAGATTTGTGAAATGGGGAACTAGGATTTAGAAATGAGAATTTGGATCCAGAGCGATTAAAATTATTGAATGGTGGGAGATCAGAAAAAATTGGCAAAAAAAAGAGAATGGTCGTGATCCCACAAGTGGGATCTTGAAAGGCTAGGATGTACGCAAACCTTACCCTTGATTTCCGACACTTGGCTATACAGTTTATTACCTCTTGCTTATTTAATATTGGAAAAGTAACAGGCAATTAATATTGAACTGTTGGATGTGTTGTTTCATCCTTGATCAGATGATGATTTTAGAGAGCTCGTTGACAAAGTTCCTGAAGGTTGCCAGATCACAATTGTATCTGACTCATGCCACAGTGGTGGCCTCATTGACAAAGCTAAAGAGCAGATAGGGGAGAGCCACAAGCAAGGTGATGACGATGAAGGCCATGGATCTGGTTTTGGATTCAAGAATTTCTTACGTCGAAATGTTGAAGATGCATTTGAATCCCGGGGTATCCACCTTCCAGGTCGCCACCATCGCCGTGAGGAAG-AAGAGGA-GAA-TTTTGCTGAGAGTAGTGTGATTGAG-AC-GGAAGACGGTGATCAA-GTTCATGTGAAGAGCAAGTCCTTGCCTCTTTCCACTCTCATCGAGATACTTAA-GCAGAAAACTGGTAAGGATGATA-TTGATGTTGGGAAACTTAGGCCAACACTCTTTGACGTCTTTGGCGAAGAT</genome_strand>
        <mrna_strand>AAAAATTTCAATGGCAAAAAAGGCAGTGTTAATTGGAATCAATTATCCAGGAACAAAAGCAGAACTTAGAGGTTGTATTAACGATGTTAATCGAATGTACAATTGTTTACTTAATCGTTTCGGATTTGCTGAGGAAGACATTACTGTTCTTATAGATACTGATGATTCTTATACACAACCAACTGGTCGGAATATACGCAAAGCTTTATCGGATCTTGTTGGATCTGCTGAATCAGGGGATTGTTTGTTTGTGCATTATAGTGGACATGGGACTAGGTTACCTGCTGAAACGGGTGAAGAAGATGATACTGGTTTTGATGAGTGTATTGTTCCTTGTGATATGAATCTTATTACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATGATTTTAGAGAGCTCGTTGACAAAGTTCCTGAAGGTTGCCGGATCACAATTGTATCTGACTCATGCCACAGTGGTGGCCTCATTGACAAAGCTAAAGAGCAGATCGGGGAGAGCCACAAGCAAGGTGATGACGATGAAGGCCATGGATCTGGTTTTGGATTCAAGAATTTCTTACGTCGAAATGTTGAAGATGCATTTGAATCCCGGGGTATCCACATTCCACGTCGCCACCATCGCCGTGAGGAAGCAAGAGGAGGAACTTTTGCTGAGAGTAGTGTGATTGAGCACGGGAAGACGGTGATCAAGGTTCATGTGAAGAGCAAGTCCTTGCCTCTTTCCACTCTCATCGAGATACTTAAGGCAGAAAACTGGTAAGGATGACACTTGATGTTGGGAAACTTAGGCCAACGCTCTTGGACGTCTTGGGGGAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E585438" ref_strand="+" ref_description="SGN-E585438 [67898]">
      <seq>aaaagtctctaaaccaaaaatttcaatggcaaaaaaggcagtgttaattggaatcaattatccaggaacaaaagcagaacttagaggttgtattaacgatgttaatcgaatgtacaattgtttacttaatcgtttcggatttgctgaggaagacattactgttcttatagatactgatgattcttatacacaaccaactggtcggaatatacgcaaagctttatcggatcttgttggatctgctgaatcaggggattgtttgtttgtgcattatagtggacatgggactaggttacctgctgaaacgggtgaagaagatgatactggttttgatgagtgtattgttccttgtgatatgaatcttattacagatgatgattttagagagctcgttgacaaagttcctgaaggttgccggatcacaattgtatctgactcatgccacagtggtggcctcattgacaaagctaaagagcagatcggggagagccacaagcaaggtgatgacgatgaaggccatggatctggttttggattcaagaatttcttacgtcgaaatgttgaagatgcatttgaatcccggggtatccacattccacgtcgccaccatcgccgtgaggaagaagaggagaactttgcttgaaagtagtgtgattgagacggaagacggtgatcaagttcatgtgaagagcaagtccttgcctctttccactctcatcgagatacttaaggcagaaaactggta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="-" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="3949" stop="1252"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3649" g_stop="3294" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="371" r_length="356" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3293" i_stop="1924" i_length="1370">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1923" g_stop="1552" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="745" r_length="374" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="-" ref_id="SGN-E585438" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E585438" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3649" e_stop="3294"/>
          <exon e_start="1923" e_stop="1552"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATTTCAATGGCGAAAAAAGCAGTATTAATTGGAATCAATTATCCAGGAACAAAAGCAGAACTTAGAGGTTGTATTAACGATGTTAAGCGAATGTACAATTGTTTACTTAATCGTTACGGATTTGCTGAGGAAGACATTACTGTTCTTATAGATACTGATGATTCTTACACACAACCAACTGGTCGGAATATACGTAAAGCTTTATCGGATCTTGTTGGATCTGCTGAATCAGGGGATTGTTTGTTTGTGCATTACAGTGGACATGGAACTAGGTTACCTGCTGAAACGGGTGAAGAAGATGATACTGGTTTTGATGAGTGTATTGTTCCTTGTGATATGAATCTTATTACAGGTAATTCAACATTTTTTTTTACTTAAACCGCTGTTTTTTAAGGATTTGGAGTAGGGGAAATGGGGCGGGGATTATGAGGTGGGGAATCGAGTTGTCAGGTAGTCAATCGACTGAGCTATTTAGATTGTACTTGATCTAAATGATGGGTTTGTTCCAAGATTGTTTTTTTCTTTGTGTTTGTTGAATTATGTTGGGGGTTATTAGTTGTATTGGTTTGATTTAAATGATGGGTTTGTTCCAAAATTTGTTTTTTTTGTGTGTGGTATGCGTTTTAATGCAGCTACTTGAGCATTTCTTTGATCAAAATTAGGAATTGAATACTTAGGTAGTTAATCAACTGAGTTAGTAAGTCTGTACTTGATCTATATCATGAGTTTGTTAAAAAAATGTTTTTTTTTTGTGTGTTGTGTTGAATTTATTGGGGGTTTAGTTGTATTGCTTTGATTTGAAGTATGTATTTGCTCCAAAATTTGTTGTTTTTTGATTTTCTGTGTTGAGTACTTATATGGTTTGATCTAGATCATGGGTGTCTTCGAAAATTTGTTTTTTTTTAATGTGTTGTGTGTGTGATATGAATTTTATTGCAGGTATTTGTATTGCTTTGATCTAAATTTTGGGTTTGTTTCAAATTTCGCTTTTTGTTTGTTTGGGGTTGGGTGTTAGAGTTGATGTGGTAGGGTCTAGGAGATTGAGATCTTCAAATGGTTTTCTCAAAAAATGATCTTGAAAGGTTGAGTTGATCTGTTTTGATGATAATTCAGGTGGATCAAAGATATAAGGAGATTTGTAAAACGAGGAAATGGGATTTTAGAAATGAGAATTTGGGTTTCTAGAGTGATTGAAATAGTTGAATGGGGGACGCGTAACAGTTGGGAAAAAAGGAGGAGTGTAGTTTACTACATTGTGATACGAATCTCATATACAGGAACTTAATCATGGGTTGTTCCAAAATTTGTTTTTTTTTCCGTGTGTGTAAGTAATTTGTAGATTGGTATTAGACTAAGATCATCATAGAATATTGAGTAAAAAAGGATCTTGAAAGTGCTTAGTTGATCTGTTTTGATGATTATTGAGATGGATCCCGAGTTTTAGGAAGATTTGTGAAATGGGGAACTAGGATTTAGAAATGAGAATTTGGATCCAGAGCGATTAAAATTATTGAATGGTGGGAGATCAGAAAAAATTGGCAAAAAAAAGAGAATGGTCGTGATCCCACAAGTGGGATCTTGAAAGGCTAGGATGTACGCAAACCTTACCCTTGATTTCCGACACTTGGCTATACAGTTTATTACCTCTTGCTTATTTAATATTGGAAAAGTAACAGGCAATTAATATTGAACTGTTGGATGTGTTGTTTCATCCTTGATCAGATGATGATTTTAGAGAGCTCGTTGACAAAGTTCCTGAAGGTTGCCAGATCACAATTGTATCTGACTCATGCCACAGTGGTGGCCTCATTGACAAAGCTAAAGAGCAGATAGGGGAGAGCCACAAGCAAGGTGATGACGATGAAGGCCATGGATCTGGTTTTGGATTCAAGAATTTCTTACGTCGAAATGTTGAAGATGCATTTGAATCCCGGGGTATCCACCTTCCAGGTCGCCACCATCGCCGTGAGGAAGAAGAGGAGAATTTTGC-TGAGAGTAGTGTGATTGAGACGGAAGACGGTGATCAAGTTCATGTGAAGAGCAAGTCCTTGCCTCTTTCCACTCTCATCGAGATACTTAA-GCAGAAAACTGGTA</genome_strand>
        <mrna_strand>AAAAATTTCAATGGCAAAAAAGGCAGTGTTAATTGGAATCAATTATCCAGGAACAAAAGCAGAACTTAGAGGTTGTATTAACGATGTTAATCGAATGTACAATTGTTTACTTAATCGTTTCGGATTTGCTGAGGAAGACATTACTGTTCTTATAGATACTGATGATTCTTATACACAACCAACTGGTCGGAATATACGCAAAGCTTTATCGGATCTTGTTGGATCTGCTGAATCAGGGGATTGTTTGTTTGTGCATTATAGTGGACATGGGACTAGGTTACCTGCTGAAACGGGTGAAGAAGATGATACTGGTTTTGATGAGTGTATTGTTCCTTGTGATATGAATCTTATTACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATGATTTTAGAGAGCTCGTTGACAAAGTTCCTGAAGGTTGCCGGATCACAATTGTATCTGACTCATGCCACAGTGGTGGCCTCATTGACAAAGCTAAAGAGCAGATCGGGGAGAGCCACAAGCAAGGTGATGACGATGAAGGCCATGGATCTGGTTTTGGATTCAAGAATTTCTTACGTCGAAATGTTGAAGATGCATTTGAATCCCGGGGTATCCACATTCCACGTCGCCACCATCGCCGTGAGGAAGAAGAGGAGAACTTTGCTTGAAAGTAGTGTGATTGAGACGGAAGACGGTGATCAAGTTCATGTGAAGAGCAAGTCCTTGCCTCTTTCCACTCTCATCGAGATACTTAAGGCAGAAAACTGGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E724234" ref_strand="+" ref_description="SGN-E724234 [FC23CA01]">
      <seq>gaatcccaaaaaattctctaaactaaaaagatcaattttttttcttgaaaaatttcaatggcgaaaaaagcagtattaattggaatcaattatccaggaacaaaagcagaacttagaggttgtattaacgatgttaagcgaatgtacaattgtttacttaatcgttacggatttgctgaggaagacattactgttcttatagatactgatgattcttacacacaaccaactggtcggaatatacgtaaagctttatcggatcttgttggatctgctgaatcaggggattgtttgtttgtgcattacagtggacatggaactaggttacctgctgaaacgggtgaagaagatgatactggttttgatgagtgtattgttccttgtgatatgaatcttattacagatgatgattttagagagctcgttgacaaagttcctgaaggttgccagatcacaattgtatctgactcatgccacagtggtggcctcattgacaaagctaaagagcagataggggagagccacaagcaaggtgatgacgatgaaggccatggatctggttttggattcaagaatttcttacgtcgaaatgttgaagatgcatttgaatcccggggtatccaccttccaggtcgccaccatcgccgtgaggaagaagaggagaattttgctgagagtagtgtgattgagacggaagacggtgatcaagttcatgtgaagagcaagtccttgcctctttccactctcatcgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="-" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="3995" stop="1274"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3696" g_stop="3294" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="403" r_length="403" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3293" i_stop="1924" i_length="1370">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1923" g_stop="1574" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="753" r_length="350" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="-" ref_id="SGN-E724234" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>753</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E724234" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3696" e_stop="3294"/>
          <exon e_start="1923" e_stop="1574"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATCCCAAAAAATTCTCTAAACTAAAAAGATCAATTTTTTTTCTTGAAAAATTTCAATGGCGAAAAAAGCAGTATTAATTGGAATCAATTATCCAGGAACAAAAGCAGAACTTAGAGGTTGTATTAACGATGTTAAGCGAATGTACAATTGTTTACTTAATCGTTACGGATTTGCTGAGGAAGACATTACTGTTCTTATAGATACTGATGATTCTTACACACAACCAACTGGTCGGAATATACGTAAAGCTTTATCGGATCTTGTTGGATCTGCTGAATCAGGGGATTGTTTGTTTGTGCATTACAGTGGACATGGAACTAGGTTACCTGCTGAAACGGGTGAAGAAGATGATACTGGTTTTGATGAGTGTATTGTTCCTTGTGATATGAATCTTATTACAGGTAATTCAACATTTTTTTTTACTTAAACCGCTGTTTTTTAAGGATTTGGAGTAGGGGAAATGGGGCGGGGATTATGAGGTGGGGAATCGAGTTGTCAGGTAGTCAATCGACTGAGCTATTTAGATTGTACTTGATCTAAATGATGGGTTTGTTCCAAGATTGTTTTTTTCTTTGTGTTTGTTGAATTATGTTGGGGGTTATTAGTTGTATTGGTTTGATTTAAATGATGGGTTTGTTCCAAAATTTGTTTTTTTTGTGTGTGGTATGCGTTTTAATGCAGCTACTTGAGCATTTCTTTGATCAAAATTAGGAATTGAATACTTAGGTAGTTAATCAACTGAGTTAGTAAGTCTGTACTTGATCTATATCATGAGTTTGTTAAAAAAATGTTTTTTTTTTGTGTGTTGTGTTGAATTTATTGGGGGTTTAGTTGTATTGCTTTGATTTGAAGTATGTATTTGCTCCAAAATTTGTTGTTTTTTGATTTTCTGTGTTGAGTACTTATATGGTTTGATCTAGATCATGGGTGTCTTCGAAAATTTGTTTTTTTTTAATGTGTTGTGTGTGTGATATGAATTTTATTGCAGGTATTTGTATTGCTTTGATCTAAATTTTGGGTTTGTTTCAAATTTCGCTTTTTGTTTGTTTGGGGTTGGGTGTTAGAGTTGATGTGGTAGGGTCTAGGAGATTGAGATCTTCAAATGGTTTTCTCAAAAAATGATCTTGAAAGGTTGAGTTGATCTGTTTTGATGATAATTCAGGTGGATCAAAGATATAAGGAGATTTGTAAAACGAGGAAATGGGATTTTAGAAATGAGAATTTGGGTTTCTAGAGTGATTGAAATAGTTGAATGGGGGACGCGTAACAGTTGGGAAAAAAGGAGGAGTGTAGTTTACTACATTGTGATACGAATCTCATATACAGGAACTTAATCATGGGTTGTTCCAAAATTTGTTTTTTTTTCCGTGTGTGTAAGTAATTTGTAGATTGGTATTAGACTAAGATCATCATAGAATATTGAGTAAAAAAGGATCTTGAAAGTGCTTAGTTGATCTGTTTTGATGATTATTGAGATGGATCCCGAGTTTTAGGAAGATTTGTGAAATGGGGAACTAGGATTTAGAAATGAGAATTTGGATCCAGAGCGATTAAAATTATTGAATGGTGGGAGATCAGAAAAAATTGGCAAAAAAAAGAGAATGGTCGTGATCCCACAAGTGGGATCTTGAAAGGCTAGGATGTACGCAAACCTTACCCTTGATTTCCGACACTTGGCTATACAGTTTATTACCTCTTGCTTATTTAATATTGGAAAAGTAACAGGCAATTAATATTGAACTGTTGGATGTGTTGTTTCATCCTTGATCAGATGATGATTTTAGAGAGCTCGTTGACAAAGTTCCTGAAGGTTGCCAGATCACAATTGTATCTGACTCATGCCACAGTGGTGGCCTCATTGACAAAGCTAAAGAGCAGATAGGGGAGAGCCACAAGCAAGGTGATGACGATGAAGGCCATGGATCTGGTTTTGGATTCAAGAATTTCTTACGTCGAAATGTTGAAGATGCATTTGAATCCCGGGGTATCCACCTTCCAGGTCGCCACCATCGCCGTGAGGAAGAAGAGGAGAATTTTGCTGAGAGTAGTGTGATTGAGACGGAAGACGGTGATCAAGTTCATGTGAAGAGCAAGTCCTTGCCTCTTTCCACTCTCATCGAG</genome_strand>
        <mrna_strand>GAATCCCAAAAAATTCTCTAAACTAAAAAGATCAATTTTTTTTCTTGAAAAATTTCAATGGCGAAAAAAGCAGTATTAATTGGAATCAATTATCCAGGAACAAAAGCAGAACTTAGAGGTTGTATTAACGATGTTAAGCGAATGTACAATTGTTTACTTAATCGTTACGGATTTGCTGAGGAAGACATTACTGTTCTTATAGATACTGATGATTCTTACACACAACCAACTGGTCGGAATATACGTAAAGCTTTATCGGATCTTGTTGGATCTGCTGAATCAGGGGATTGTTTGTTTGTGCATTACAGTGGACATGGAACTAGGTTACCTGCTGAAACGGGTGAAGAAGATGATACTGGTTTTGATGAGTGTATTGTTCCTTGTGATATGAATCTTATTACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATGATTTTAGAGAGCTCGTTGACAAAGTTCCTGAAGGTTGCCAGATCACAATTGTATCTGACTCATGCCACAGTGGTGGCCTCATTGACAAAGCTAAAGAGCAGATAGGGGAGAGCCACAAGCAAGGTGATGACGATGAAGGCCATGGATCTGGTTTTGGATTCAAGAATTTCTTACGTCGAAATGTTGAAGATGCATTTGAATCCCGGGGTATCCACCTTCCAGGTCGCCACCATCGCCGTGAGGAAGAAGAGGAGAATTTTGCTGAGAGTAGTGTGATTGAGACGGAAGACGGTGATCAAGTTCATGTGAAGAGCAAGTCCTTGCCTCTTTCCACTCTCATCGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E585437" ref_strand="+" ref_description="SGN-E585437 [67897]">
      <seq>aaaagttctctaaaccaaaaatttcaatggcaaaaaaggcagtgttaattggaatcaattatccaggaacaaaagcagaacttagaggttgtattaacgatgttaatcgaatgtacaattgtttacttaatcgtttcggatttgctgaggaagacattactgttcttatagatactgatgattcttatacacaaccaactggtcggaatatacgcaaagctttatcggatcttgttggatctgctgaatcaggggattgtttgtttgtgcattatagtggacatgggactaggttacctgctgaaacgggtgaagaagatgatactggttttgatgagtgtattgttccttgtgatatgaatcttattacagatgatgattttagagagctcgttgacaaagttcctgaaggttgccggatcacaattgtatctgactcatgccacagtggtggcctcattgacaaagctaaagagcagatcggggagagccacaagcaaggtgatgacgatgaaggccatggatctggttttggattcaagaatttcttacgtcgaaatgttgaagatgcatttgaatcccggggtatccacattccacgtcgccaccatcgccgtgaggacagaagaggagaactttgctgagagtagtgtgacttgagacggaagacggttgatcaacgttcatgtggaagagcaagtccttgcctcttttccaactctcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="-" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="3949" stop="1277"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3665" g_stop="3294" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="372" r_length="372" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3293" i_stop="1924" i_length="1370">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1923" g_stop="1577" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="726" r_length="354" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="-" ref_id="SGN-E585437" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E585437" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3665" e_stop="3294"/>
          <exon e_start="1923" e_stop="1577"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATTTTTTTTCTTGAAAAATTTCAATGGCGAAAAAAGCAGTATTAATTGGAATCAATTATCCAGGAACAAAAGCAGAACTTAGAGGTTGTATTAACGATGTTAAGCGAATGTACAATTGTTTACTTAATCGTTACGGATTTGCTGAGGAAGACATTACTGTTCTTATAGATACTGATGATTCTTACACACAACCAACTGGTCGGAATATACGTAAAGCTTTATCGGATCTTGTTGGATCTGCTGAATCAGGGGATTGTTTGTTTGTGCATTACAGTGGACATGGAACTAGGTTACCTGCTGAAACGGGTGAAGAAGATGATACTGGTTTTGATGAGTGTATTGTTCCTTGTGATATGAATCTTATTACAGGTAATTCAACATTTTTTTTTACTTAAACCGCTGTTTTTTAAGGATTTGGAGTAGGGGAAATGGGGCGGGGATTATGAGGTGGGGAATCGAGTTGTCAGGTAGTCAATCGACTGAGCTATTTAGATTGTACTTGATCTAAATGATGGGTTTGTTCCAAGATTGTTTTTTTCTTTGTGTTTGTTGAATTATGTTGGGGGTTATTAGTTGTATTGGTTTGATTTAAATGATGGGTTTGTTCCAAAATTTGTTTTTTTTGTGTGTGGTATGCGTTTTAATGCAGCTACTTGAGCATTTCTTTGATCAAAATTAGGAATTGAATACTTAGGTAGTTAATCAACTGAGTTAGTAAGTCTGTACTTGATCTATATCATGAGTTTGTTAAAAAAATGTTTTTTTTTTGTGTGTTGTGTTGAATTTATTGGGGGTTTAGTTGTATTGCTTTGATTTGAAGTATGTATTTGCTCCAAAATTTGTTGTTTTTTGATTTTCTGTGTTGAGTACTTATATGGTTTGATCTAGATCATGGGTGTCTTCGAAAATTTGTTTTTTTTTAATGTGTTGTGTGTGTGATATGAATTTTATTGCAGGTATTTGTATTGCTTTGATCTAAATTTTGGGTTTGTTTCAAATTTCGCTTTTTGTTTGTTTGGGGTTGGGTGTTAGAGTTGATGTGGTAGGGTCTAGGAGATTGAGATCTTCAAATGGTTTTCTCAAAAAATGATCTTGAAAGGTTGAGTTGATCTGTTTTGATGATAATTCAGGTGGATCAAAGATATAAGGAGATTTGTAAAACGAGGAAATGGGATTTTAGAAATGAGAATTTGGGTTTCTAGAGTGATTGAAATAGTTGAATGGGGGACGCGTAACAGTTGGGAAAAAAGGAGGAGTGTAGTTTACTACATTGTGATACGAATCTCATATACAGGAACTTAATCATGGGTTGTTCCAAAATTTGTTTTTTTTTCCGTGTGTGTAAGTAATTTGTAGATTGGTATTAGACTAAGATCATCATAGAATATTGAGTAAAAAAGGATCTTGAAAGTGCTTAGTTGATCTGTTTTGATGATTATTGAGATGGATCCCGAGTTTTAGGAAGATTTGTGAAATGGGGAACTAGGATTTAGAAATGAGAATTTGGATCCAGAGCGATTAAAATTATTGAATGGTGGGAGATCAGAAAAAATTGGCAAAAAAAAGAGAATGGTCGTGATCCCACAAGTGGGATCTTGAAAGGCTAGGATGTACGCAAACCTTACCCTTGATTTCCGACACTTGGCTATACAGTTTATTACCTCTTGCTTATTTAATATTGGAAAAGTAACAGGCAATTAATATTGAACTGTTGGATGTGTTGTTTCATCCTTGATCAGATGATGATTTTAGAGAGCTCGTTGACAAAGTTCCTGAAGGTTGCCAGATCACAATTGTATCTGACTCATGCCACAGTGGTGGCCTCATTGACAAAGCTAAAGAGCAGATAGGGGAGAGCCACAAGCAAGGTGATGACGATGAAGGCCATGGATCTGGTTTTGGATTCAAGAATTTCTTACGTCGAAATGTTGAAGATGCATTTGAATCCCGGGGTATCCACCTTCCAGGTCGCCACCATCGCCGTGAGGA-AGAAGAGGAGAATTTTGCTGAGAGTAGTGTGA-TTGAGACGGAAGACGG-TGATCAA-GTTCATGT-GAAGAGCAAGTCCTTGCCTC-TTTCC-ACTCTCATC</genome_strand>
        <mrna_strand>AAAAGTTCTCTAAACCAAAAATTTCAATGGCAAAAAAGGCAGTGTTAATTGGAATCAATTATCCAGGAACAAAAGCAGAACTTAGAGGTTGTATTAACGATGTTAATCGAATGTACAATTGTTTACTTAATCGTTTCGGATTTGCTGAGGAAGACATTACTGTTCTTATAGATACTGATGATTCTTATACACAACCAACTGGTCGGAATATACGCAAAGCTTTATCGGATCTTGTTGGATCTGCTGAATCAGGGGATTGTTTGTTTGTGCATTATAGTGGACATGGGACTAGGTTACCTGCTGAAACGGGTGAAGAAGATGATACTGGTTTTGATGAGTGTATTGTTCCTTGTGATATGAATCTTATTACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATGATTTTAGAGAGCTCGTTGACAAAGTTCCTGAAGGTTGCCGGATCACAATTGTATCTGACTCATGCCACAGTGGTGGCCTCATTGACAAAGCTAAAGAGCAGATCGGGGAGAGCCACAAGCAAGGTGATGACGATGAAGGCCATGGATCTGGTTTTGGATTCAAGAATTTCTTACGTCGAAATGTTGAAGATGCATTTGAATCCCGGGGTATCCACATTCCACGTCGCCACCATCGCCGTGAGGACAGAAGAGGAGAACTTTGCTGAGAGTAGTGTGACTTGAGACGGAAGACGGTTGATCAACGTTCATGTGGAAGAGCAAGTCCTTGCCTCTTTTCCAACTCTCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E585436" ref_strand="+" ref_description="SGN-E585436 [67896]">
      <seq>aaaagttctctaaaccaaaaatttcaatggcaaaaaaggcagtgttaattggaatcaattatccaggaacaaaagcagaacttagaggttgtattaacgatgttaatcgaatgtacaattgtttacttaatcgtttcggatttgctgaggaagacattactgttcttatagatactgatgattcttatacacaaccaactggtcggaatatacgcaaagctttatcggatcttgttggatctgctgaatcaggggattgtttgtttgtgcattatagtggacatgggactaggttacctgctgaaacgggtgaagaagatgatactggttttgatgagtgtattgttccttgtgatatgaatcttattacagatgatgattttagagagctcgttgacaaagttcctgaaggttgccggatcacaattgtatctgactcatgccacagtggtggcctcattgacaaagctaaagagcagatcggggagagccacaagcaaggtgatgacgatgaaggccatggatctggttttggattcaagaatttcttacgtcgaaatgttgaagatgcatttgaatcccggggtatccacattccacgtcgccaccatcgccgtgagggaagaaggaggagaactttgctgagagtagtgtgattgagacggaagacggggatcaaggttcatgtgaagagcaagtcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="-" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="3949" stop="1298"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3665" g_stop="3294" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="372" r_length="372" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3293" i_stop="1924" i_length="1370">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1923" g_stop="1598" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="701" r_length="329" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="-" ref_id="SGN-E585436" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E585436" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3665" e_stop="3294"/>
          <exon e_start="1923" e_stop="1598"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATTTTTTTTCTTGAAAAATTTCAATGGCGAAAAAAGCAGTATTAATTGGAATCAATTATCCAGGAACAAAAGCAGAACTTAGAGGTTGTATTAACGATGTTAAGCGAATGTACAATTGTTTACTTAATCGTTACGGATTTGCTGAGGAAGACATTACTGTTCTTATAGATACTGATGATTCTTACACACAACCAACTGGTCGGAATATACGTAAAGCTTTATCGGATCTTGTTGGATCTGCTGAATCAGGGGATTGTTTGTTTGTGCATTACAGTGGACATGGAACTAGGTTACCTGCTGAAACGGGTGAAGAAGATGATACTGGTTTTGATGAGTGTATTGTTCCTTGTGATATGAATCTTATTACAGGTAATTCAACATTTTTTTTTACTTAAACCGCTGTTTTTTAAGGATTTGGAGTAGGGGAAATGGGGCGGGGATTATGAGGTGGGGAATCGAGTTGTCAGGTAGTCAATCGACTGAGCTATTTAGATTGTACTTGATCTAAATGATGGGTTTGTTCCAAGATTGTTTTTTTCTTTGTGTTTGTTGAATTATGTTGGGGGTTATTAGTTGTATTGGTTTGATTTAAATGATGGGTTTGTTCCAAAATTTGTTTTTTTTGTGTGTGGTATGCGTTTTAATGCAGCTACTTGAGCATTTCTTTGATCAAAATTAGGAATTGAATACTTAGGTAGTTAATCAACTGAGTTAGTAAGTCTGTACTTGATCTATATCATGAGTTTGTTAAAAAAATGTTTTTTTTTTGTGTGTTGTGTTGAATTTATTGGGGGTTTAGTTGTATTGCTTTGATTTGAAGTATGTATTTGCTCCAAAATTTGTTGTTTTTTGATTTTCTGTGTTGAGTACTTATATGGTTTGATCTAGATCATGGGTGTCTTCGAAAATTTGTTTTTTTTTAATGTGTTGTGTGTGTGATATGAATTTTATTGCAGGTATTTGTATTGCTTTGATCTAAATTTTGGGTTTGTTTCAAATTTCGCTTTTTGTTTGTTTGGGGTTGGGTGTTAGAGTTGATGTGGTAGGGTCTAGGAGATTGAGATCTTCAAATGGTTTTCTCAAAAAATGATCTTGAAAGGTTGAGTTGATCTGTTTTGATGATAATTCAGGTGGATCAAAGATATAAGGAGATTTGTAAAACGAGGAAATGGGATTTTAGAAATGAGAATTTGGGTTTCTAGAGTGATTGAAATAGTTGAATGGGGGACGCGTAACAGTTGGGAAAAAAGGAGGAGTGTAGTTTACTACATTGTGATACGAATCTCATATACAGGAACTTAATCATGGGTTGTTCCAAAATTTGTTTTTTTTTCCGTGTGTGTAAGTAATTTGTAGATTGGTATTAGACTAAGATCATCATAGAATATTGAGTAAAAAAGGATCTTGAAAGTGCTTAGTTGATCTGTTTTGATGATTATTGAGATGGATCCCGAGTTTTAGGAAGATTTGTGAAATGGGGAACTAGGATTTAGAAATGAGAATTTGGATCCAGAGCGATTAAAATTATTGAATGGTGGGAGATCAGAAAAAATTGGCAAAAAAAAGAGAATGGTCGTGATCCCACAAGTGGGATCTTGAAAGGCTAGGATGTACGCAAACCTTACCCTTGATTTCCGACACTTGGCTATACAGTTTATTACCTCTTGCTTATTTAATATTGGAAAAGTAACAGGCAATTAATATTGAACTGTTGGATGTGTTGTTTCATCCTTGATCAGATGATGATTTTAGAGAGCTCGTTGACAAAGTTCCTGAAGGTTGCCAGATCACAATTGTATCTGACTCATGCCACAGTGGTGGCCTCATTGACAAAGCTAAAGAGCAGATAGGGGAGAGCCACAAGCAAGGTGATGACGATGAAGGCCATGGATCTGGTTTTGGATTCAAGAATTTCTTACGTCGAAATGTTGAAGATGCATTTGAATCCCGGGGTATCCACCTTCCAGGTCGCCACCATCGCCGTGAGG-AAGAA-GAGGAGAATTTTGCTGAGAGTAGTGTGATTGAGACGGAAGACGGTGATCAA-GTTCATGTGAAGAGCAAGTCC</genome_strand>
        <mrna_strand>AAAAGTTCTCTAAACCAAAAATTTCAATGGCAAAAAAGGCAGTGTTAATTGGAATCAATTATCCAGGAACAAAAGCAGAACTTAGAGGTTGTATTAACGATGTTAATCGAATGTACAATTGTTTACTTAATCGTTTCGGATTTGCTGAGGAAGACATTACTGTTCTTATAGATACTGATGATTCTTATACACAACCAACTGGTCGGAATATACGCAAAGCTTTATCGGATCTTGTTGGATCTGCTGAATCAGGGGATTGTTTGTTTGTGCATTATAGTGGACATGGGACTAGGTTACCTGCTGAAACGGGTGAAGAAGATGATACTGGTTTTGATGAGTGTATTGTTCCTTGTGATATGAATCTTATTACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATGATTTTAGAGAGCTCGTTGACAAAGTTCCTGAAGGTTGCCGGATCACAATTGTATCTGACTCATGCCACAGTGGTGGCCTCATTGACAAAGCTAAAGAGCAGATCGGGGAGAGCCACAAGCAAGGTGATGACGATGAAGGCCATGGATCTGGTTTTGGATTCAAGAATTTCTTACGTCGAAATGTTGAAGATGCATTTGAATCCCGGGGTATCCACATTCCACGTCGCCACCATCGCCGTGAGGGAAGAAGGAGGAGAACTTTGCTGAGAGTAGTGTGATTGAGACGGAAGACGGGGATCAAGGTTCATGTGAAGAGCAAGTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E454667" ref_strand="+" ref_description="SGN-E454667 [cSTS-24-C15]">
      <seq>aattggaatcaattatccaggaacaaaagcagaacttagaggttgtattaacgatgttaatcgaatgtacaattgtttacttaatcgtttcggatttgctgaggaagacattactgttcttatagatactgatgattcttacacacaaccaactggtcggaatatacgtaaagctttatcggatcttgttggatctgctgaatcaggggattgtttgtttgtgcattatagtggacatggaactaggttacctgctgaaacgggtgaagaagatgatactggttttgatgagtgtattgttccttgtgatatgaatcttattacagatgatgattttagagagctcgttgataaagttcctgaaggttgccggatcacaattgtatccgactcatgccacagtggtggcctcattgacaaagctaaagagcagatcggggagagccacaagcaaggtgatgacgatgaaggccaaggatctggttttggattcaagaatttcttacgtcgaaatgttgaagatgcatttgaatcccggggtatccacattccacgtcgccaccatcgccgtgaggaagaagaggagaactttgctgagagtagtgtgattgagacggaagacggtgatcaagttcatgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="-" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="3919" stop="1309"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3619" g_stop="3294" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3293" i_stop="1924" i_length="1370">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1923" g_stop="1609" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="641" r_length="315" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="-" ref_id="SGN-E454667" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E454667" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3619" e_stop="3294"/>
          <exon e_start="1923" e_stop="1609"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGGAATCAATTATCCAGGAACAAAAGCAGAACTTAGAGGTTGTATTAACGATGTTAAGCGAATGTACAATTGTTTACTTAATCGTTACGGATTTGCTGAGGAAGACATTACTGTTCTTATAGATACTGATGATTCTTACACACAACCAACTGGTCGGAATATACGTAAAGCTTTATCGGATCTTGTTGGATCTGCTGAATCAGGGGATTGTTTGTTTGTGCATTACAGTGGACATGGAACTAGGTTACCTGCTGAAACGGGTGAAGAAGATGATACTGGTTTTGATGAGTGTATTGTTCCTTGTGATATGAATCTTATTACAGGTAATTCAACATTTTTTTTTACTTAAACCGCTGTTTTTTAAGGATTTGGAGTAGGGGAAATGGGGCGGGGATTATGAGGTGGGGAATCGAGTTGTCAGGTAGTCAATCGACTGAGCTATTTAGATTGTACTTGATCTAAATGATGGGTTTGTTCCAAGATTGTTTTTTTCTTTGTGTTTGTTGAATTATGTTGGGGGTTATTAGTTGTATTGGTTTGATTTAAATGATGGGTTTGTTCCAAAATTTGTTTTTTTTGTGTGTGGTATGCGTTTTAATGCAGCTACTTGAGCATTTCTTTGATCAAAATTAGGAATTGAATACTTAGGTAGTTAATCAACTGAGTTAGTAAGTCTGTACTTGATCTATATCATGAGTTTGTTAAAAAAATGTTTTTTTTTTGTGTGTTGTGTTGAATTTATTGGGGGTTTAGTTGTATTGCTTTGATTTGAAGTATGTATTTGCTCCAAAATTTGTTGTTTTTTGATTTTCTGTGTTGAGTACTTATATGGTTTGATCTAGATCATGGGTGTCTTCGAAAATTTGTTTTTTTTTAATGTGTTGTGTGTGTGATATGAATTTTATTGCAGGTATTTGTATTGCTTTGATCTAAATTTTGGGTTTGTTTCAAATTTCGCTTTTTGTTTGTTTGGGGTTGGGTGTTAGAGTTGATGTGGTAGGGTCTAGGAGATTGAGATCTTCAAATGGTTTTCTCAAAAAATGATCTTGAAAGGTTGAGTTGATCTGTTTTGATGATAATTCAGGTGGATCAAAGATATAAGGAGATTTGTAAAACGAGGAAATGGGATTTTAGAAATGAGAATTTGGGTTTCTAGAGTGATTGAAATAGTTGAATGGGGGACGCGTAACAGTTGGGAAAAAAGGAGGAGTGTAGTTTACTACATTGTGATACGAATCTCATATACAGGAACTTAATCATGGGTTGTTCCAAAATTTGTTTTTTTTTCCGTGTGTGTAAGTAATTTGTAGATTGGTATTAGACTAAGATCATCATAGAATATTGAGTAAAAAAGGATCTTGAAAGTGCTTAGTTGATCTGTTTTGATGATTATTGAGATGGATCCCGAGTTTTAGGAAGATTTGTGAAATGGGGAACTAGGATTTAGAAATGAGAATTTGGATCCAGAGCGATTAAAATTATTGAATGGTGGGAGATCAGAAAAAATTGGCAAAAAAAAGAGAATGGTCGTGATCCCACAAGTGGGATCTTGAAAGGCTAGGATGTACGCAAACCTTACCCTTGATTTCCGACACTTGGCTATACAGTTTATTACCTCTTGCTTATTTAATATTGGAAAAGTAACAGGCAATTAATATTGAACTGTTGGATGTGTTGTTTCATCCTTGATCAGATGATGATTTTAGAGAGCTCGTTGACAAAGTTCCTGAAGGTTGCCAGATCACAATTGTATCTGACTCATGCCACAGTGGTGGCCTCATTGACAAAGCTAAAGAGCAGATAGGGGAGAGCCACAAGCAAGGTGATGACGATGAAGGCCATGGATCTGGTTTTGGATTCAAGAATTTCTTACGTCGAAATGTTGAAGATGCATTTGAATCCCGGGGTATCCACCTTCCAGGTCGCCACCATCGCCGTGAGGAAGAAGAGGAGAATTTTGCTGAGAGTAGTGTGATTGAGACGGAAGACGGTGATCAAGTTCATGTGA</genome_strand>
        <mrna_strand>AATTGGAATCAATTATCCAGGAACAAAAGCAGAACTTAGAGGTTGTATTAACGATGTTAATCGAATGTACAATTGTTTACTTAATCGTTTCGGATTTGCTGAGGAAGACATTACTGTTCTTATAGATACTGATGATTCTTACACACAACCAACTGGTCGGAATATACGTAAAGCTTTATCGGATCTTGTTGGATCTGCTGAATCAGGGGATTGTTTGTTTGTGCATTATAGTGGACATGGAACTAGGTTACCTGCTGAAACGGGTGAAGAAGATGATACTGGTTTTGATGAGTGTATTGTTCCTTGTGATATGAATCTTATTACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATGATTTTAGAGAGCTCGTTGATAAAGTTCCTGAAGGTTGCCGGATCACAATTGTATCCGACTCATGCCACAGTGGTGGCCTCATTGACAAAGCTAAAGAGCAGATCGGGGAGAGCCACAAGCAAGGTGATGACGATGAAGGCCAAGGATCTGGTTTTGGATTCAAGAATTTCTTACGTCGAAATGTTGAAGATGCATTTGAATCCCGGGGTATCCACATTCCACGTCGCCACCATCGCCGTGAGGAAGAAGAGGAGAACTTTGCTGAGAGTAGTGTGATTGAGACGGAAGACGGTGATCAAGTTCATGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E485509" ref_strand="+" ref_description="SGN-E485509 [cSTE-18-C10]">
      <seq>ctgctgaaacgggtgaagaagatgatactggttttgatgagtgtattgttccttgtgatatgaatcttattacagatgatgattttagagagctcgttgacaaagttcctgaaggttgccggatcacaattgtatccgactcatgccacagtggtggcctcattgacaaagctaaagagcagattggggagagccacaagcaaggtgatgatgatgaaggccaaggatctggttttggattcaagaatttcttacgtcgaaatgttgaagatgcatttgaatcccggggtatccacattccacgtcgccaccatcgccgtgaggaagtagaggagaactttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="-" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="3668" stop="1355"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3368" g_stop="3294" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3293" i_stop="1924" i_length="1370">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1923" g_stop="1655" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="344" r_length="269" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="-" ref_id="SGN-E485509" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>344</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E485509" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3368" e_stop="3294"/>
          <exon e_start="1923" e_stop="1655"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCTGAAACGGGTGAAGAAGATGATACTGGTTTTGATGAGTGTATTGTTCCTTGTGATATGAATCTTATTACAGGTAATTCAACATTTTTTTTTACTTAAACCGCTGTTTTTTAAGGATTTGGAGTAGGGGAAATGGGGCGGGGATTATGAGGTGGGGAATCGAGTTGTCAGGTAGTCAATCGACTGAGCTATTTAGATTGTACTTGATCTAAATGATGGGTTTGTTCCAAGATTGTTTTTTTCTTTGTGTTTGTTGAATTATGTTGGGGGTTATTAGTTGTATTGGTTTGATTTAAATGATGGGTTTGTTCCAAAATTTGTTTTTTTTGTGTGTGGTATGCGTTTTAATGCAGCTACTTGAGCATTTCTTTGATCAAAATTAGGAATTGAATACTTAGGTAGTTAATCAACTGAGTTAGTAAGTCTGTACTTGATCTATATCATGAGTTTGTTAAAAAAATGTTTTTTTTTTGTGTGTTGTGTTGAATTTATTGGGGGTTTAGTTGTATTGCTTTGATTTGAAGTATGTATTTGCTCCAAAATTTGTTGTTTTTTGATTTTCTGTGTTGAGTACTTATATGGTTTGATCTAGATCATGGGTGTCTTCGAAAATTTGTTTTTTTTTAATGTGTTGTGTGTGTGATATGAATTTTATTGCAGGTATTTGTATTGCTTTGATCTAAATTTTGGGTTTGTTTCAAATTTCGCTTTTTGTTTGTTTGGGGTTGGGTGTTAGAGTTGATGTGGTAGGGTCTAGGAGATTGAGATCTTCAAATGGTTTTCTCAAAAAATGATCTTGAAAGGTTGAGTTGATCTGTTTTGATGATAATTCAGGTGGATCAAAGATATAAGGAGATTTGTAAAACGAGGAAATGGGATTTTAGAAATGAGAATTTGGGTTTCTAGAGTGATTGAAATAGTTGAATGGGGGACGCGTAACAGTTGGGAAAAAAGGAGGAGTGTAGTTTACTACATTGTGATACGAATCTCATATACAGGAACTTAATCATGGGTTGTTCCAAAATTTGTTTTTTTTTCCGTGTGTGTAAGTAATTTGTAGATTGGTATTAGACTAAGATCATCATAGAATATTGAGTAAAAAAGGATCTTGAAAGTGCTTAGTTGATCTGTTTTGATGATTATTGAGATGGATCCCGAGTTTTAGGAAGATTTGTGAAATGGGGAACTAGGATTTAGAAATGAGAATTTGGATCCAGAGCGATTAAAATTATTGAATGGTGGGAGATCAGAAAAAATTGGCAAAAAAAAGAGAATGGTCGTGATCCCACAAGTGGGATCTTGAAAGGCTAGGATGTACGCAAACCTTACCCTTGATTTCCGACACTTGGCTATACAGTTTATTACCTCTTGCTTATTTAATATTGGAAAAGTAACAGGCAATTAATATTGAACTGTTGGATGTGTTGTTTCATCCTTGATCAGATGATGATTTTAGAGAGCTCGTTGACAAAGTTCCTGAAGGTTGCCAGATCACAATTGTATCTGACTCATGCCACAGTGGTGGCCTCATTGACAAAGCTAAAGAGCAGATAGGGGAGAGCCACAAGCAAGGTGATGACGATGAAGGCCATGGATCTGGTTTTGGATTCAAGAATTTCTTACGTCGAAATGTTGAAGATGCATTTGAATCCCGGGGTATCCACCTTCCAGGTCGCCACCATCGCCGTGAGGAAGAAGAGGAGAATTTTGCT</genome_strand>
        <mrna_strand>CTGCTGAAACGGGTGAAGAAGATGATACTGGTTTTGATGAGTGTATTGTTCCTTGTGATATGAATCTTATTACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATGATTTTAGAGAGCTCGTTGACAAAGTTCCTGAAGGTTGCCGGATCACAATTGTATCCGACTCATGCCACAGTGGTGGCCTCATTGACAAAGCTAAAGAGCAGATTGGGGAGAGCCACAAGCAAGGTGATGATGATGAAGGCCAAGGATCTGGTTTTGGATTCAAGAATTTCTTACGTCGAAATGTTGAAGATGCATTTGAATCCCGGGGTATCCACATTCCACGTCGCCACCATCGCCGTGAGGAAGTAGAGGAGAACTTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E275986" ref_strand="+" ref_description="SGN-E275986 [cLEN-12-H4]">
      <seq>taaactaaaaagatcaattttttttcttgaaaaatttcaatggcgaaaaaagcagtattaattggaatcaattatccaggaacaaaagcagaacttagaggttgtattaacgatgttaagcgaatgtacaattgtttacttaatcgttacggatttgctgaggaagacattactgttcttatagatactgatgattcttacacacaaccaactggtcggaatatacgtaaagctttatcggatcttgttggatctgctgaatcaggggattgtttgtttgtgcattacagtggacatggaactaggttacctgctgaaacgggtgaagaagatgatactggttttgatgagtgtattgttccttgtgatatgaatcttattacagatgatgattttagagagctcgttgacaaagttcctgaaggttgccagatcacaattgtatctgactcatgccacagtggtggcctcattgacaaagctaaagagcagatagggtagagccacaagcaaggtgatgacgatgaaggccatggatctggttttggattcaagaatttcttacgtcgaaatgttgaagatgcatttgaatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="-" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="3978" stop="1415"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3678" g_stop="3294" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3293" i_stop="1924" i_length="1370">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1923" g_stop="1715" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="594" r_length="209" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="-" ref_id="SGN-E275986" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E275986" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3678" e_stop="3294"/>
          <exon e_start="1923" e_stop="1715"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAACTAAAAAGATCAATTTTTTTTCTTGAAAAATTTCAATGGCGAAAAAAGCAGTATTAATTGGAATCAATTATCCAGGAACAAAAGCAGAACTTAGAGGTTGTATTAACGATGTTAAGCGAATGTACAATTGTTTACTTAATCGTTACGGATTTGCTGAGGAAGACATTACTGTTCTTATAGATACTGATGATTCTTACACACAACCAACTGGTCGGAATATACGTAAAGCTTTATCGGATCTTGTTGGATCTGCTGAATCAGGGGATTGTTTGTTTGTGCATTACAGTGGACATGGAACTAGGTTACCTGCTGAAACGGGTGAAGAAGATGATACTGGTTTTGATGAGTGTATTGTTCCTTGTGATATGAATCTTATTACAGGTAATTCAACATTTTTTTTTACTTAAACCGCTGTTTTTTAAGGATTTGGAGTAGGGGAAATGGGGCGGGGATTATGAGGTGGGGAATCGAGTTGTCAGGTAGTCAATCGACTGAGCTATTTAGATTGTACTTGATCTAAATGATGGGTTTGTTCCAAGATTGTTTTTTTCTTTGTGTTTGTTGAATTATGTTGGGGGTTATTAGTTGTATTGGTTTGATTTAAATGATGGGTTTGTTCCAAAATTTGTTTTTTTTGTGTGTGGTATGCGTTTTAATGCAGCTACTTGAGCATTTCTTTGATCAAAATTAGGAATTGAATACTTAGGTAGTTAATCAACTGAGTTAGTAAGTCTGTACTTGATCTATATCATGAGTTTGTTAAAAAAATGTTTTTTTTTTGTGTGTTGTGTTGAATTTATTGGGGGTTTAGTTGTATTGCTTTGATTTGAAGTATGTATTTGCTCCAAAATTTGTTGTTTTTTGATTTTCTGTGTTGAGTACTTATATGGTTTGATCTAGATCATGGGTGTCTTCGAAAATTTGTTTTTTTTTAATGTGTTGTGTGTGTGATATGAATTTTATTGCAGGTATTTGTATTGCTTTGATCTAAATTTTGGGTTTGTTTCAAATTTCGCTTTTTGTTTGTTTGGGGTTGGGTGTTAGAGTTGATGTGGTAGGGTCTAGGAGATTGAGATCTTCAAATGGTTTTCTCAAAAAATGATCTTGAAAGGTTGAGTTGATCTGTTTTGATGATAATTCAGGTGGATCAAAGATATAAGGAGATTTGTAAAACGAGGAAATGGGATTTTAGAAATGAGAATTTGGGTTTCTAGAGTGATTGAAATAGTTGAATGGGGGACGCGTAACAGTTGGGAAAAAAGGAGGAGTGTAGTTTACTACATTGTGATACGAATCTCATATACAGGAACTTAATCATGGGTTGTTCCAAAATTTGTTTTTTTTTCCGTGTGTGTAAGTAATTTGTAGATTGGTATTAGACTAAGATCATCATAGAATATTGAGTAAAAAAGGATCTTGAAAGTGCTTAGTTGATCTGTTTTGATGATTATTGAGATGGATCCCGAGTTTTAGGAAGATTTGTGAAATGGGGAACTAGGATTTAGAAATGAGAATTTGGATCCAGAGCGATTAAAATTATTGAATGGTGGGAGATCAGAAAAAATTGGCAAAAAAAAGAGAATGGTCGTGATCCCACAAGTGGGATCTTGAAAGGCTAGGATGTACGCAAACCTTACCCTTGATTTCCGACACTTGGCTATACAGTTTATTACCTCTTGCTTATTTAATATTGGAAAAGTAACAGGCAATTAATATTGAACTGTTGGATGTGTTGTTTCATCCTTGATCAGATGATGATTTTAGAGAGCTCGTTGACAAAGTTCCTGAAGGTTGCCAGATCACAATTGTATCTGACTCATGCCACAGTGGTGGCCTCATTGACAAAGCTAAAGAGCAGATAGGGGAGAGCCACAAGCAAGGTGATGACGATGAAGGCCATGGATCTGGTTTTGGATTCAAGAATTTCTTACGTCGAAATGTTGAAGATGCATTTGAATCC</genome_strand>
        <mrna_strand>TAAACTAAAAAGATCAATTTTTTTTCTTGAAAAATTTCAATGGCGAAAAAAGCAGTATTAATTGGAATCAATTATCCAGGAACAAAAGCAGAACTTAGAGGTTGTATTAACGATGTTAAGCGAATGTACAATTGTTTACTTAATCGTTACGGATTTGCTGAGGAAGACATTACTGTTCTTATAGATACTGATGATTCTTACACACAACCAACTGGTCGGAATATACGTAAAGCTTTATCGGATCTTGTTGGATCTGCTGAATCAGGGGATTGTTTGTTTGTGCATTACAGTGGACATGGAACTAGGTTACCTGCTGAAACGGGTGAAGAAGATGATACTGGTTTTGATGAGTGTATTGTTCCTTGTGATATGAATCTTATTACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATGATTTTAGAGAGCTCGTTGACAAAGTTCCTGAAGGTTGCCAGATCACAATTGTATCTGACTCATGCCACAGTGGTGGCCTCATTGACAAAGCTAAAGAGCAGATAGGGTAGAGCCACAAGCAAGGTGATGACGATGAAGGCCATGGATCTGGTTTTGGATTCAAGAATTTCTTACGTCGAAATGTTGAAGATGCATTTGAATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E276087" ref_strand="+" ref_description="SGN-E276087 [cLEN-12-F1]">
      <seq>taaactaaaaagatcaattttttttcttgaaaaatttcaatggcgaaaaaagcagtattaattggaatcaattatccaggaacaaaagcagaacttagaggttgtattaacgatgttaagcgaatgtacaattgtttacttaatcgttacggatttgctgaggaagacattactgttcttatagatactgatgattcttacacacaaccaactggtcggaatatacgtaaagctttatcggatcttgttggatctgctgaatcaggggattgtttgtttgtgcattacagtggacatggaactaggttacctgctgaaacgggtgaagaagatgatactggttttgatgagtgtattgttccttgtgatatgaatcttattacagatgatgattttagagagctcgttgacaaagttcctgaaggttgccagatcacaattgtatctgactcatgccacagtggtggcctcattgacaaagctaaagagcagatagggtagagccacaagcaaggtgatgacgatgaaggccatggatctggttttggattcaagaatttcttacgtcgaaatgttgaagatgcatttgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="-" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="3978" stop="1418"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3678" g_stop="3294" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3293" i_stop="1924" i_length="1370">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1923" g_stop="1718" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="591" r_length="206" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="-" ref_id="SGN-E276087" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E276087" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3678" e_stop="3294"/>
          <exon e_start="1923" e_stop="1718"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAACTAAAAAGATCAATTTTTTTTCTTGAAAAATTTCAATGGCGAAAAAAGCAGTATTAATTGGAATCAATTATCCAGGAACAAAAGCAGAACTTAGAGGTTGTATTAACGATGTTAAGCGAATGTACAATTGTTTACTTAATCGTTACGGATTTGCTGAGGAAGACATTACTGTTCTTATAGATACTGATGATTCTTACACACAACCAACTGGTCGGAATATACGTAAAGCTTTATCGGATCTTGTTGGATCTGCTGAATCAGGGGATTGTTTGTTTGTGCATTACAGTGGACATGGAACTAGGTTACCTGCTGAAACGGGTGAAGAAGATGATACTGGTTTTGATGAGTGTATTGTTCCTTGTGATATGAATCTTATTACAGGTAATTCAACATTTTTTTTTACTTAAACCGCTGTTTTTTAAGGATTTGGAGTAGGGGAAATGGGGCGGGGATTATGAGGTGGGGAATCGAGTTGTCAGGTAGTCAATCGACTGAGCTATTTAGATTGTACTTGATCTAAATGATGGGTTTGTTCCAAGATTGTTTTTTTCTTTGTGTTTGTTGAATTATGTTGGGGGTTATTAGTTGTATTGGTTTGATTTAAATGATGGGTTTGTTCCAAAATTTGTTTTTTTTGTGTGTGGTATGCGTTTTAATGCAGCTACTTGAGCATTTCTTTGATCAAAATTAGGAATTGAATACTTAGGTAGTTAATCAACTGAGTTAGTAAGTCTGTACTTGATCTATATCATGAGTTTGTTAAAAAAATGTTTTTTTTTTGTGTGTTGTGTTGAATTTATTGGGGGTTTAGTTGTATTGCTTTGATTTGAAGTATGTATTTGCTCCAAAATTTGTTGTTTTTTGATTTTCTGTGTTGAGTACTTATATGGTTTGATCTAGATCATGGGTGTCTTCGAAAATTTGTTTTTTTTTAATGTGTTGTGTGTGTGATATGAATTTTATTGCAGGTATTTGTATTGCTTTGATCTAAATTTTGGGTTTGTTTCAAATTTCGCTTTTTGTTTGTTTGGGGTTGGGTGTTAGAGTTGATGTGGTAGGGTCTAGGAGATTGAGATCTTCAAATGGTTTTCTCAAAAAATGATCTTGAAAGGTTGAGTTGATCTGTTTTGATGATAATTCAGGTGGATCAAAGATATAAGGAGATTTGTAAAACGAGGAAATGGGATTTTAGAAATGAGAATTTGGGTTTCTAGAGTGATTGAAATAGTTGAATGGGGGACGCGTAACAGTTGGGAAAAAAGGAGGAGTGTAGTTTACTACATTGTGATACGAATCTCATATACAGGAACTTAATCATGGGTTGTTCCAAAATTTGTTTTTTTTTCCGTGTGTGTAAGTAATTTGTAGATTGGTATTAGACTAAGATCATCATAGAATATTGAGTAAAAAAGGATCTTGAAAGTGCTTAGTTGATCTGTTTTGATGATTATTGAGATGGATCCCGAGTTTTAGGAAGATTTGTGAAATGGGGAACTAGGATTTAGAAATGAGAATTTGGATCCAGAGCGATTAAAATTATTGAATGGTGGGAGATCAGAAAAAATTGGCAAAAAAAAGAGAATGGTCGTGATCCCACAAGTGGGATCTTGAAAGGCTAGGATGTACGCAAACCTTACCCTTGATTTCCGACACTTGGCTATACAGTTTATTACCTCTTGCTTATTTAATATTGGAAAAGTAACAGGCAATTAATATTGAACTGTTGGATGTGTTGTTTCATCCTTGATCAGATGATGATTTTAGAGAGCTCGTTGACAAAGTTCCTGAAGGTTGCCAGATCACAATTGTATCTGACTCATGCCACAGTGGTGGCCTCATTGACAAAGCTAAAGAGCAGATAGGGGAGAGCCACAAGCAAGGTGATGACGATGAAGGCCATGGATCTGGTTTTGGATTCAAGAATTTCTTACGTCGAAATGTTGAAGATGCATTTGAA</genome_strand>
        <mrna_strand>TAAACTAAAAAGATCAATTTTTTTTCTTGAAAAATTTCAATGGCGAAAAAAGCAGTATTAATTGGAATCAATTATCCAGGAACAAAAGCAGAACTTAGAGGTTGTATTAACGATGTTAAGCGAATGTACAATTGTTTACTTAATCGTTACGGATTTGCTGAGGAAGACATTACTGTTCTTATAGATACTGATGATTCTTACACACAACCAACTGGTCGGAATATACGTAAAGCTTTATCGGATCTTGTTGGATCTGCTGAATCAGGGGATTGTTTGTTTGTGCATTACAGTGGACATGGAACTAGGTTACCTGCTGAAACGGGTGAAGAAGATGATACTGGTTTTGATGAGTGTATTGTTCCTTGTGATATGAATCTTATTACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATGATTTTAGAGAGCTCGTTGACAAAGTTCCTGAAGGTTGCCAGATCACAATTGTATCTGACTCATGCCACAGTGGTGGCCTCATTGACAAAGCTAAAGAGCAGATAGGGTAGAGCCACAAGCAAGGTGATGACGATGAAGGCCATGGATCTGGTTTTGGATTCAAGAATTTCTTACGTCGAAATGTTGAAGATGCATTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E578689" ref_strand="+" ref_description="SGN-E578689 [85809]">
      <seq>aaaaagttctctaaaccaaaaatttcaatggcaaaaaaggcagtgttaattggaatcaattatccaggaacaaaagcagaacttagaggttgtattaacgatgttaatcgaatgtacaattgtttacttaatcgtttcggatttgctgaggaagacattactgttcttatagatactgatgattcttatacacaaccaactggtcggaatatacgcaaagctttatcggatctggtgggatctgctgaatcaggggatggttggtttgtgcataatagtggacatgggactaggttaacttgttgaaacgggtgaagaagatgatactggtttggatgagtgtatggtcccttgtgatatgattcttattacagatgatgatttaaaaaagctcgttgacaaagttcctgaaggttgccggatcacaatggtatctgactcatgccacagtggtggcctctttgacaaagctaaagagcagatcgggaaaagccacaagcaaggtgatgacgatgaaggccatggatctggtttgggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="-" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="3949" stop="1459"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3666" g_stop="3294" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="374" r_length="374" r_score="0.914"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3293" i_stop="1924" i_length="1370">
            <donor d_prob="0.986" d_score="0.92"/>
            <acceptor a_prob="0.956" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1923" g_stop="1759" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="539" r_length="165" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="-" ref_id="SGN-E578689" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E578689" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3666" e_stop="3294"/>
          <exon e_start="1923" e_stop="1759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAATTTTTTTTCTTGAAAAATTTCAATGGCGAAAAAAGCAGTATTAATTGGAATCAATTATCCAGGAACAAAAGCAGAACTTAGAGGTTGTATTAACGATGTTAAGCGAATGTACAATTGTTTACTTAATCGTTACGGATTTGCTGAGGAAGACATTACTGTTCTTATAGATACTGATGATTCTTACACACAACCAACTGGTCGGAATATACGTAAAGCTTTATCGGATCTTGTTGGATCTGCTGAATCAGGGGATTGTTTGTTTGTGCATTACAGTGGACATGGAACTAGGTT-ACCTGCTGAAACGGGTGAAGAAGATGATACTGGTTTTGATGAGTGTATTGTTCCTTGTGATATGAATCTTATTACAGGTAATTCAACATTTTTTTTTACTTAAACCGCTGTTTTTTAAGGATTTGGAGTAGGGGAAATGGGGCGGGGATTATGAGGTGGGGAATCGAGTTGTCAGGTAGTCAATCGACTGAGCTATTTAGATTGTACTTGATCTAAATGATGGGTTTGTTCCAAGATTGTTTTTTTCTTTGTGTTTGTTGAATTATGTTGGGGGTTATTAGTTGTATTGGTTTGATTTAAATGATGGGTTTGTTCCAAAATTTGTTTTTTTTGTGTGTGGTATGCGTTTTAATGCAGCTACTTGAGCATTTCTTTGATCAAAATTAGGAATTGAATACTTAGGTAGTTAATCAACTGAGTTAGTAAGTCTGTACTTGATCTATATCATGAGTTTGTTAAAAAAATGTTTTTTTTTTGTGTGTTGTGTTGAATTTATTGGGGGTTTAGTTGTATTGCTTTGATTTGAAGTATGTATTTGCTCCAAAATTTGTTGTTTTTTGATTTTCTGTGTTGAGTACTTATATGGTTTGATCTAGATCATGGGTGTCTTCGAAAATTTGTTTTTTTTTAATGTGTTGTGTGTGTGATATGAATTTTATTGCAGGTATTTGTATTGCTTTGATCTAAATTTTGGGTTTGTTTCAAATTTCGCTTTTTGTTTGTTTGGGGTTGGGTGTTAGAGTTGATGTGGTAGGGTCTAGGAGATTGAGATCTTCAAATGGTTTTCTCAAAAAATGATCTTGAAAGGTTGAGTTGATCTGTTTTGATGATAATTCAGGTGGATCAAAGATATAAGGAGATTTGTAAAACGAGGAAATGGGATTTTAGAAATGAGAATTTGGGTTTCTAGAGTGATTGAAATAGTTGAATGGGGGACGCGTAACAGTTGGGAAAAAAGGAGGAGTGTAGTTTACTACATTGTGATACGAATCTCATATACAGGAACTTAATCATGGGTTGTTCCAAAATTTGTTTTTTTTTCCGTGTGTGTAAGTAATTTGTAGATTGGTATTAGACTAAGATCATCATAGAATATTGAGTAAAAAAGGATCTTGAAAGTGCTTAGTTGATCTGTTTTGATGATTATTGAGATGGATCCCGAGTTTTAGGAAGATTTGTGAAATGGGGAACTAGGATTTAGAAATGAGAATTTGGATCCAGAGCGATTAAAATTATTGAATGGTGGGAGATCAGAAAAAATTGGCAAAAAAAAGAGAATGGTCGTGATCCCACAAGTGGGATCTTGAAAGGCTAGGATGTACGCAAACCTTACCCTTGATTTCCGACACTTGGCTATACAGTTTATTACCTCTTGCTTATTTAATATTGGAAAAGTAACAGGCAATTAATATTGAACTGTTGGATGTGTTGTTTCATCCTTGATCAGATGATGATTTTAGAGAGCTCGTTGACAAAGTTCCTGAAGGTTGCCAGATCACAATTGTATCTGACTCATGCCACAGTGGTGGCCTCATTGACAAAGCTAAAGAGCAGATAGGGGAGAGCCACAAGCAAGGTGATGACGATGAAGGCCATGGATCTGGTTTTGGAT</genome_strand>
        <mrna_strand>AAAAAGTTCTCTAAACCAAAAATTTCAATGGCAAAAAAGGCAGTGTTAATTGGAATCAATTATCCAGGAACAAAAGCAGAACTTAGAGGTTGTATTAACGATGTTAATCGAATGTACAATTGTTTACTTAATCGTTTCGGATTTGCTGAGGAAGACATTACTGTTCTTATAGATACTGATGATTCTTATACACAACCAACTGGTCGGAATATACGCAAAGCTTTATCGGATCTGGTGGGATCTGCTGAATCAGGGGATGGTTGGTTTGTGCATAATAGTGGACATGGGACTAGGTTAACTTGTTGAAACGGGTGAAGAAGATGATACTGGTTTGGATGAGTGTATGGTCCCTTGTGATATGATTCTTATTACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATGATTTAAAAAAGCTCGTTGACAAAGTTCCTGAAGGTTGCCGGATCACAATGGTATCTGACTCATGCCACAGTGGTGGCCTCTTTGACAAAGCTAAAGAGCAGATCGGGAAAAGCCACAAGCAAGGTGATGACGATGAAGGCCATGGATCTGGTTTGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E285333" ref_strand="+" ref_description="SGN-E285333 [cLER-20-K12]">
      <seq>aaagatcaattttttttcttgaaaaatttcaatggcgaaaaaagcagtattaattggaatcaattatccaggaacaaaagcagaacttagaggttgtattaacgatgttaagcgaatgtacaattgtttacttaatcgttacggatttgctgaggaagacattactgttcttatagatactgatgattcttacacacaaccaactggtcggaatatacgtaaagctttatcggatcttgttggatctgctgaatcaggggattgtttgtttgtgcattacagtggacatggaactaggttacctgctgaaacgggtgaagaagatgatactggttttgatgagtgtattgttccttgtgatatgaatcttattacagatgatgattttagagagctcgttgacaaagttcctgaaggttgccagatcacaattgtattctgactcatgccacagtggtggcctcattgacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="-" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="3970" stop="1529"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3670" g_stop="3294" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="377" r_length="377" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3293" i_stop="1924" i_length="1370">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1923" g_stop="1829" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="473" r_length="96" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="-" ref_id="SGN-E285333" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285333" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3670" e_stop="3294"/>
          <exon e_start="1923" e_stop="1829"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATCAATTTTTTTTCTTGAAAAATTTCAATGGCGAAAAAAGCAGTATTAATTGGAATCAATTATCCAGGAACAAAAGCAGAACTTAGAGGTTGTATTAACGATGTTAAGCGAATGTACAATTGTTTACTTAATCGTTACGGATTTGCTGAGGAAGACATTACTGTTCTTATAGATACTGATGATTCTTACACACAACCAACTGGTCGGAATATACGTAAAGCTTTATCGGATCTTGTTGGATCTGCTGAATCAGGGGATTGTTTGTTTGTGCATTACAGTGGACATGGAACTAGGTTACCTGCTGAAACGGGTGAAGAAGATGATACTGGTTTTGATGAGTGTATTGTTCCTTGTGATATGAATCTTATTACAGGTAATTCAACATTTTTTTTTACTTAAACCGCTGTTTTTTAAGGATTTGGAGTAGGGGAAATGGGGCGGGGATTATGAGGTGGGGAATCGAGTTGTCAGGTAGTCAATCGACTGAGCTATTTAGATTGTACTTGATCTAAATGATGGGTTTGTTCCAAGATTGTTTTTTTCTTTGTGTTTGTTGAATTATGTTGGGGGTTATTAGTTGTATTGGTTTGATTTAAATGATGGGTTTGTTCCAAAATTTGTTTTTTTTGTGTGTGGTATGCGTTTTAATGCAGCTACTTGAGCATTTCTTTGATCAAAATTAGGAATTGAATACTTAGGTAGTTAATCAACTGAGTTAGTAAGTCTGTACTTGATCTATATCATGAGTTTGTTAAAAAAATGTTTTTTTTTTGTGTGTTGTGTTGAATTTATTGGGGGTTTAGTTGTATTGCTTTGATTTGAAGTATGTATTTGCTCCAAAATTTGTTGTTTTTTGATTTTCTGTGTTGAGTACTTATATGGTTTGATCTAGATCATGGGTGTCTTCGAAAATTTGTTTTTTTTTAATGTGTTGTGTGTGTGATATGAATTTTATTGCAGGTATTTGTATTGCTTTGATCTAAATTTTGGGTTTGTTTCAAATTTCGCTTTTTGTTTGTTTGGGGTTGGGTGTTAGAGTTGATGTGGTAGGGTCTAGGAGATTGAGATCTTCAAATGGTTTTCTCAAAAAATGATCTTGAAAGGTTGAGTTGATCTGTTTTGATGATAATTCAGGTGGATCAAAGATATAAGGAGATTTGTAAAACGAGGAAATGGGATTTTAGAAATGAGAATTTGGGTTTCTAGAGTGATTGAAATAGTTGAATGGGGGACGCGTAACAGTTGGGAAAAAAGGAGGAGTGTAGTTTACTACATTGTGATACGAATCTCATATACAGGAACTTAATCATGGGTTGTTCCAAAATTTGTTTTTTTTTCCGTGTGTGTAAGTAATTTGTAGATTGGTATTAGACTAAGATCATCATAGAATATTGAGTAAAAAAGGATCTTGAAAGTGCTTAGTTGATCTGTTTTGATGATTATTGAGATGGATCCCGAGTTTTAGGAAGATTTGTGAAATGGGGAACTAGGATTTAGAAATGAGAATTTGGATCCAGAGCGATTAAAATTATTGAATGGTGGGAGATCAGAAAAAATTGGCAAAAAAAAGAGAATGGTCGTGATCCCACAAGTGGGATCTTGAAAGGCTAGGATGTACGCAAACCTTACCCTTGATTTCCGACACTTGGCTATACAGTTTATTACCTCTTGCTTATTTAATATTGGAAAAGTAACAGGCAATTAATATTGAACTGTTGGATGTGTTGTTTCATCCTTGATCAGATGATGATTTTAGAGAGCTCGTTGACAAAGTTCCTGAAGGTTGCCAGATCACAATTGTA-TCTGACTCATGCCACAGTGGTGGCCTCATTGACAAA</genome_strand>
        <mrna_strand>AAAGATCAATTTTTTTTCTTGAAAAATTTCAATGGCGAAAAAAGCAGTATTAATTGGAATCAATTATCCAGGAACAAAAGCAGAACTTAGAGGTTGTATTAACGATGTTAAGCGAATGTACAATTGTTTACTTAATCGTTACGGATTTGCTGAGGAAGACATTACTGTTCTTATAGATACTGATGATTCTTACACACAACCAACTGGTCGGAATATACGTAAAGCTTTATCGGATCTTGTTGGATCTGCTGAATCAGGGGATTGTTTGTTTGTGCATTACAGTGGACATGGAACTAGGTTACCTGCTGAAACGGGTGAAGAAGATGATACTGGTTTTGATGAGTGTATTGTTCCTTGTGATATGAATCTTATTACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATGATTTTAGAGAGCTCGTTGACAAAGTTCCTGAAGGTTGCCAGATCACAATTGTATTCTGACTCATGCCACAGTGGTGGCCTCATTGACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E341315" ref_strand="+" ref_description="SGN-E341315 [cTOE-22-P23]">
      <seq>ttcaatcaacaatcccaaaaaattctctaaactaaaaagatcaattttttttcttgaaaaatttcaatggcgaaaaaagcagtattaattggaatcaattatccaggaacaaaagcagaacttagaggttgtattaacgatgttaagcgaatgtacaattgtttacttaatcgttacggatttgctgaggaagacattactgttcttatagatactgatgattcttacacacaaccaactggtcggaatatacgtaaagctttatcggatcttgttggatctgctgaatcaagggattgtttgtttgtgcattacagtggacatggaactaggttacctgctgaaacgggtgaagaagatgatactggttttgatgagtgtattgttccttgtgatatgaatcttattacagatgatgattttagagagctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="-" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="4005" stop="1604"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3705" g_stop="3294" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="412" r_length="412" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3293" i_stop="1924" i_length="1370">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1923" g_stop="1904" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="432" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="-" ref_id="SGN-E341315" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3705" e_stop="3294"/>
          <exon e_start="1923" e_stop="1904"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAATCAACAATCCCAAAAAATTCTCTAAACTAAAAAGATCAATTTTTTTTCTTGAAAAATTTCAATGGCGAAAAAAGCAGTATTAATTGGAATCAATTATCCAGGAACAAAAGCAGAACTTAGAGGTTGTATTAACGATGTTAAGCGAATGTACAATTGTTTACTTAATCGTTACGGATTTGCTGAGGAAGACATTACTGTTCTTATAGATACTGATGATTCTTACACACAACCAACTGGTCGGAATATACGTAAAGCTTTATCGGATCTTGTTGGATCTGCTGAATCAGGGGATTGTTTGTTTGTGCATTACAGTGGACATGGAACTAGGTTACCTGCTGAAACGGGTGAAGAAGATGATACTGGTTTTGATGAGTGTATTGTTCCTTGTGATATGAATCTTATTACAGGTAATTCAACATTTTTTTTTACTTAAACCGCTGTTTTTTAAGGATTTGGAGTAGGGGAAATGGGGCGGGGATTATGAGGTGGGGAATCGAGTTGTCAGGTAGTCAATCGACTGAGCTATTTAGATTGTACTTGATCTAAATGATGGGTTTGTTCCAAGATTGTTTTTTTCTTTGTGTTTGTTGAATTATGTTGGGGGTTATTAGTTGTATTGGTTTGATTTAAATGATGGGTTTGTTCCAAAATTTGTTTTTTTTGTGTGTGGTATGCGTTTTAATGCAGCTACTTGAGCATTTCTTTGATCAAAATTAGGAATTGAATACTTAGGTAGTTAATCAACTGAGTTAGTAAGTCTGTACTTGATCTATATCATGAGTTTGTTAAAAAAATGTTTTTTTTTTGTGTGTTGTGTTGAATTTATTGGGGGTTTAGTTGTATTGCTTTGATTTGAAGTATGTATTTGCTCCAAAATTTGTTGTTTTTTGATTTTCTGTGTTGAGTACTTATATGGTTTGATCTAGATCATGGGTGTCTTCGAAAATTTGTTTTTTTTTAATGTGTTGTGTGTGTGATATGAATTTTATTGCAGGTATTTGTATTGCTTTGATCTAAATTTTGGGTTTGTTTCAAATTTCGCTTTTTGTTTGTTTGGGGTTGGGTGTTAGAGTTGATGTGGTAGGGTCTAGGAGATTGAGATCTTCAAATGGTTTTCTCAAAAAATGATCTTGAAAGGTTGAGTTGATCTGTTTTGATGATAATTCAGGTGGATCAAAGATATAAGGAGATTTGTAAAACGAGGAAATGGGATTTTAGAAATGAGAATTTGGGTTTCTAGAGTGATTGAAATAGTTGAATGGGGGACGCGTAACAGTTGGGAAAAAAGGAGGAGTGTAGTTTACTACATTGTGATACGAATCTCATATACAGGAACTTAATCATGGGTTGTTCCAAAATTTGTTTTTTTTTCCGTGTGTGTAAGTAATTTGTAGATTGGTATTAGACTAAGATCATCATAGAATATTGAGTAAAAAAGGATCTTGAAAGTGCTTAGTTGATCTGTTTTGATGATTATTGAGATGGATCCCGAGTTTTAGGAAGATTTGTGAAATGGGGAACTAGGATTTAGAAATGAGAATTTGGATCCAGAGCGATTAAAATTATTGAATGGTGGGAGATCAGAAAAAATTGGCAAAAAAAAGAGAATGGTCGTGATCCCACAAGTGGGATCTTGAAAGGCTAGGATGTACGCAAACCTTACCCTTGATTTCCGACACTTGGCTATACAGTTTATTACCTCTTGCTTATTTAATATTGGAAAAGTAACAGGCAATTAATATTGAACTGTTGGATGTGTTGTTTCATCCTTGATCAGATGATGATTTTAGAGAGCTC</genome_strand>
        <mrna_strand>TTCAATCAACAATCCCAAAAAATTCTCTAAACTAAAAAGATCAATTTTTTTTCTTGAAAAATTTCAATGGCGAAAAAAGCAGTATTAATTGGAATCAATTATCCAGGAACAAAAGCAGAACTTAGAGGTTGTATTAACGATGTTAAGCGAATGTACAATTGTTTACTTAATCGTTACGGATTTGCTGAGGAAGACATTACTGTTCTTATAGATACTGATGATTCTTACACACAACCAACTGGTCGGAATATACGTAAAGCTTTATCGGATCTTGTTGGATCTGCTGAATCAAGGGATTGTTTGTTTGTGCATTACAGTGGACATGGAACTAGGTTACCTGCTGAAACGGGTGAAGAAGATGATACTGGTTTTGATGAGTGTATTGTTCCTTGTGATATGAATCTTATTACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATGATTTTAGAGAGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E699233" ref_strand="+" ref_description="SGN-E699233 [FA09AH02]">
      <seq>aaaaatttcaatggcgaaaaaacctttattaattggaatcaattatccaggaacaaaagcagaacttagaggttgtattaacgatgttaaccgaatgtacaattgtttacttaatcgttacggatttgctgaggaagacattactgttcttatagatactgatgattcttacacacaaccaactggtcggaatatacgtaaagctttatcggatcttgttggatctgctgaatcacgggattgtttgtttgtgcattacagtggacatggaactaggttacctgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="-" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="3949" stop="3062"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3649" g_stop="3362" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="288" r_length="288" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="-" ref_id="SGN-E699233" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>288</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699233" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3649" e_stop="3362"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATTTCAATGGCGAAAAAAGCAGTATTAATTGGAATCAATTATCCAGGAACAAAAGCAGAACTTAGAGGTTGTATTAACGATGTTAAGCGAATGTACAATTGTTTACTTAATCGTTACGGATTTGCTGAGGAAGACATTACTGTTCTTATAGATACTGATGATTCTTACACACAACCAACTGGTCGGAATATACGTAAAGCTTTATCGGATCTTGTTGGATCTGCTGAATCAGGGGATTGTTTGTTTGTGCATTACAGTGGACATGGAACTAGGTTACCTGCTGA</genome_strand>
        <mrna_strand>AAAAATTTCAATGGCGAAAAAACCTTTATTAATTGGAATCAATTATCCAGGAACAAAAGCAGAACTTAGAGGTTGTATTAACGATGTTAACCGAATGTACAATTGTTTACTTAATCGTTACGGATTTGCTGAGGAAGACATTACTGTTCTTATAGATACTGATGATTCTTACACACAACCAACTGGTCGGAATATACGTAAAGCTTTATCGGATCTTGTTGGATCTGCTGAATCACGGGATTGTTTGTTTGTGCATTACAGTGGACATGGAACTAGGTTACCTGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E228220" ref_strand="+" ref_description="SGN-E228220 [cLED-2-O18]">
      <seq>taaactaaatagatcaattttttttcttgaaaaatttcaatggcgaaaaaagcagtattaattggaatcaattatccaggaacaaaagcagaacttagaggttgtattaacgatgttaagcgaatgtacaattgtttacttaatcgttacggatttgctgaggaagacattactgttcttatagatactgatgattcttacacacaaccaactggtcggaatatacgtaaagctttatcggatcttgttggatctgctgaatcaagggattgtttgtttgagcattacagtggacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="-" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="3978" stop="3081"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3678" g_stop="3381" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="298" r_length="298" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="-" ref_id="SGN-E228220" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>298</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228220" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3678" e_stop="3381"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAACTAAAAAGATCAATTTTTTTTCTTGAAAAATTTCAATGGCGAAAAAAGCAGTATTAATTGGAATCAATTATCCAGGAACAAAAGCAGAACTTAGAGGTTGTATTAACGATGTTAAGCGAATGTACAATTGTTTACTTAATCGTTACGGATTTGCTGAGGAAGACATTACTGTTCTTATAGATACTGATGATTCTTACACACAACCAACTGGTCGGAATATACGTAAAGCTTTATCGGATCTTGTTGGATCTGCTGAATCAGGGGATTGTTTGTTTGTGCATTACAGTGGACATG</genome_strand>
        <mrna_strand>TAAACTAAATAGATCAATTTTTTTTCTTGAAAAATTTCAATGGCGAAAAAAGCAGTATTAATTGGAATCAATTATCCAGGAACAAAAGCAGAACTTAGAGGTTGTATTAACGATGTTAAGCGAATGTACAATTGTTTACTTAATCGTTACGGATTTGCTGAGGAAGACATTACTGTTCTTATAGATACTGATGATTCTTACACACAACCAACTGGTCGGAATATACGTAAAGCTTTATCGGATCTTGTTGGATCTGCTGAATCAAGGGATTGTTTGTTTGAGCATTACAGTGGACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E358232" ref_strand="+" ref_description="SGN-E358232 [cLHT-23-J4]">
      <seq>gttgaaacaaacattaaaaacatcaaaatgtctatgtcctctatttttaatagaccaagattggttgttaagaaagttttggctagggctcaaaataaaggtgatggtgctattgttagaagaagcattggaagacctgaattgcagaatcttgatccattcctcatgttagatgagtttagtgtttcacaacctgctggatttcctgaccatccacacagaggttttgagactgtcacttatatgttgcagggagcttttactcatcaagattttgctggtcacaagggtacaatcaggactggtgatgtgcagtggatgacagcaggaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="+" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="5165" stop="6769"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5465" g_stop="5598" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5599" i_stop="5792" i_length="194">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5793" g_stop="5842" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="184" r_length="50" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5843" i_stop="5932" i_length="90">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5933" g_stop="6000" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="252" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6001" i_stop="6184" i_length="184">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6185" g_stop="6247" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="315" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6248" i_stop="6452" i_length="205">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6453" g_stop="6469" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="332" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="+" ref_id="SGN-E358232" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>332</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E358232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5465" e_stop="5598"/>
          <exon e_start="5793" e_stop="5842"/>
          <exon e_start="5933" e_stop="6000"/>
          <exon e_start="6185" e_stop="6247"/>
          <exon e_start="6453" e_stop="6469"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGAAACAAACATTAAAAACATCAAAATGTCTATGTCCTCTATTTTTAGTAGACCAAGATTGGTTGTTAAGAAAGTTTTGGCTAGAGCTCAAAATGAAGGTGATGGTGCTATTGTTAGAAGAAGCATTGGAAGGTAACTATGTTTCTATACTTCTTTCCTTTTTCTTGATTTTTTATCATCGTTGTGATAATCGAGAAATCTCTGACGATCATAAATATGTTGGTGAATAATAATCACATCTTTTTATTTTTCTCCAAATTAGATACCATATATCAGAAACACGACTCGAATACTGATTGTTTTTTTTTTATATAATATTTGATCAGGCCTGAATTGCAGAATCTTGATCCATTCCTCATGTTAGATGAGTTTAGTGGTAATTTTTTTTTCTCTTAGTATATTATTTTGTGGATTTTATTTTGATTTTGACTTATTAAAAAGCTATGTTATTTTTGGCTTCTTGCAGTTTCACAACCTGCTGGATTTCCTGACCATCCACACAGAGGTTTTGAGACTGTCACTTATATGTTGCAGGTAAAAATTCATTTTAATTTCTTTTTTTTTTGGGTGAAAGTTTAACTTTTGTACACCGACCAAAAAAATATTGATATATACTATTAGGTATCGCGATGTATATAAGTTAAACTCTGTATTTGGTGTATGGATTATGGAGATTGAAAATTCTAATGTGATTTAATTTTGTGGTGTTTAATTTTAGGGAGCTTTTACTCATCAAGATTTTGCTGGTCACAAGGGTACAATCAGGACTGGTGATGTGCAGGTAATAAGTTTGCTCACAACACCACTATCAACTTAAGTTACGTACACTGACAGTGTGAAGATTTTTAATAATATCAGTGTAATATAACATAACATGTGATAGTTACCTCCTAAAGTGGGACTTCATGACGCGATAGAATATCGAATTTATGAAATTTAAAGTGTGTTTTATGATTTTATTTTTTTTCCCGTTTGGTTTAATGCAGTGGATGACAGCAGGAAG</genome_strand>
        <mrna_strand>GTTGAAACAAACATTAAAAACATCAAAATGTCTATGTCCTCTATTTTTAATAGACCAAGATTGGTTGTTAAGAAAGTTTTGGCTAGGGCTCAAAATAAAGGTGATGGTGCTATTGTTAGAAGAAGCATTGGAAG..................................................................................................................................................................................................ACCTGAATTGCAGAATCTTGATCCATTCCTCATGTTAGATGAGTTTAGTG..........................................................................................TTTCACAACCTGCTGGATTTCCTGACCATCCACACAGAGGTTTTGAGACTGTCACTTATATGTTGCAG........................................................................................................................................................................................GGAGCTTTTACTCATCAAGATTTTGCTGGTCACAAGGGTACAATCAGGACTGGTGATGTGCAG.............................................................................................................................................................................................................TGGATGACAGCAGGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E747543" ref_strand="+" ref_description="SGN-E747543 [GI|6651244]">
      <seq>taaaaacatcaaaatgtctatgtcctctatttttagtagaccaagattggttgttaagaaagttttggctagagctcaaaatgaaggtgatggtgctattgttagaagaagcattggaaggcctgaattgcagaatcttgatccattcctcatgttagatgagtttagtgtttcacaacctgctggatttcctgaccatccacacagaggttttgagactgtcacttatatgttgcagggagcttttactcatcaagattttgctggtcacaagggtacaatcaggactggtgatgtgcagtggatgacagcaggaagaggtatagttcattcagaaatgcctgctggaccaggtactcaaaaggggttgcagctttggataaatttatcttctaaggacaaaatgattgagccaaggtatcaagaattgctacaccaagacataccaaaggctgaaaaagatggtgtttcggttactattttagcaggggaatccatggggaaaaaatcacaagttttcacgcgaacgcctacaatgtaccttgatttcaccctaaaaccaggttctgagcatcatcaaccgatccccgagacctggaatgccttcctctacatagttgaaggagagggagcgtttggttcttcggattcaaccactacaccagctcaccattgcttggttttaggccctggtgaaggtctaagtgtgtggaacaaatcttcaaagccattgaggtttgttctgataggagggcaaccgattaacgagcctgtcgtgcagtatggtccatttgttatgaacactaagagtgagattatgcaggcttatcaagattatcaacttggaaagaatggatttgaaagatcaagacaatggtattctaaatgagtaaacagagttacatcttatacttcatgaacattaagtgcaatagtcattagttttcttaatgatttcaagttgtgttagtctttgctttcatttgaaatgttatgtgtgttgagtgatgtatattagtgttcatctccttcatttgttaaagattgtatttatagtaatttatgttagagttcttgaattaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="+" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="5179" stop="7844"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5479" g_stop="5598" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5599" i_stop="5792" i_length="194">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5793" g_stop="5842" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="170" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5843" i_stop="5932" i_length="90">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5933" g_stop="6000" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="238" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6001" i_stop="6184" i_length="184">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6185" g_stop="6247" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="301" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6248" i_stop="6452" i_length="205">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6453" g_stop="6556" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="405" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="6557" i_stop="6865" i_length="309">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="6866" g_stop="7550" g_length="685"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="1090" r_length="685" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="+" ref_id="SGN-E747543" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>1090</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E747543" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5479" e_stop="5598"/>
          <exon e_start="5793" e_stop="5842"/>
          <exon e_start="5933" e_stop="6000"/>
          <exon e_start="6185" e_stop="6247"/>
          <exon e_start="6453" e_stop="6556"/>
          <exon e_start="6866" e_stop="7550"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAAACATCAAAATGTCTATGTCCTCTATTTTTAGTAGACCAAGATTGGTTGTTAAGAAAGTTTTGGCTAGAGCTCAAAATGAAGGTGATGGTGCTATTGTTAGAAGAAGCATTGGAAGGTAACTATGTTTCTATACTTCTTTCCTTTTTCTTGATTTTTTATCATCGTTGTGATAATCGAGAAATCTCTGACGATCATAAATATGTTGGTGAATAATAATCACATCTTTTTATTTTTCTCCAAATTAGATACCATATATCAGAAACACGACTCGAATACTGATTGTTTTTTTTTTATATAATATTTGATCAGGCCTGAATTGCAGAATCTTGATCCATTCCTCATGTTAGATGAGTTTAGTGGTAATTTTTTTTTCTCTTAGTATATTATTTTGTGGATTTTATTTTGATTTTGACTTATTAAAAAGCTATGTTATTTTTGGCTTCTTGCAGTTTCACAACCTGCTGGATTTCCTGACCATCCACACAGAGGTTTTGAGACTGTCACTTATATGTTGCAGGTAAAAATTCATTTTAATTTCTTTTTTTTTTGGGTGAAAGTTTAACTTTTGTACACCGACCAAAAAAATATTGATATATACTATTAGGTATCGCGATGTATATAAGTTAAACTCTGTATTTGGTGTATGGATTATGGAGATTGAAAATTCTAATGTGATTTAATTTTGTGGTGTTTAATTTTAGGGAGCTTTTACTCATCAAGATTTTGCTGGTCACAAGGGTACAATCAGGACTGGTGATGTGCAGGTAATAAGTTTGCTCACAACACCACTATCAACTTAAGTTACGTACACTGACAGTGTGAAGATTTTTAATAATATCAGTGTAATATAACATAACATGTGATAGTTACCTCCTAAAGTGGGACTTCATGACGCGATAGAATATCGAATTTATGAAATTTAAAGTGTGTTTTATGATTTTATTTTTTTTCCCGTTTGGTTTAATGCAGTGGATGACAGCAGGAAGAGGTATAGTTCATTCAGAAATGCCTGCTGGACCAGGTACTCAAAAGGGGTTGCAGCTTTGGATAAATTTATCTTCTAAGGACAAAATGTAAGTTACATTGATTCAATTTTGACTTTAGTGTTTGAAAAATCTAGTATTTCATTTTTTAACATATTCCTATAAAACATGTACTCTGATCAAAATTCATAAAACTTAAGCGTTTAAGATTTAATATATATGTATTAAAGTATGACTTGACCTATATGAGTCAGACAAAGGGTGTTCGAGTAACCAGTCTTCAATCTGTGTGGCTAAAACATGCTTTAGTCACAACAACTCATGACCCTGTTACTTCACGAGCCTTCATTGCCCCGTTTTTTGTAACTTCACTCATTTTGTCCATCCATATTGATGCAGGATTGAGCCAAGGTATCAAGAATTGCTACACCAAGACATACCAAAGGCTGAAAAAGATGGTGTTTCGGTTACTATTTTAGCAGGGGAATCCATGGGGAAAAAATCACAAGTTTTCACGCGAACGCCTACAATGTACCTTGATTTCACCCTAAAACCAGGTTCTGAGCATCATCAACCGATCCCCGAGACCTGGAATGCCTTCCTCTACATAGTTGAAGGAGAGGGAGCGTTTGGTTCTTCGGATTCAACCACTACACCAGCTCACCATTGCTTGGTTTTAGGCCCTGGTGAAGGTCTAAGTGTGTGGAACAAATCTTCAAAGCCATTGAGGTTTGTTCTGATAGGAGGGCAACCGATTAACGAGCCTGTCGTGCAGTATGGTCCATTTGTTATGAACACTAAGAGTGAGATTATGCAGGCTTATCAAGATTATCAACTTGGAAAGAATGGATTTGAAAGATCAAGACAATGGTATTCTAAATGAGTAAACAGAGTTACATCTTATACTTCATGAACATTAAGTGCAATAGTCATTAGTTTTCTTAATGATTTCAAGTTGTGTTAGTCTTTGCTTTCATTTGAAATGTTATGTGTGTTGAGTGATGTTTATTAGTGTTCATTTCCTTCATTTGTTCAAGATTGTATTTATAGTAATTTATGTTAGAGTTCTTGAATTATATCTTAG</genome_strand>
        <mrna_strand>TAAAAACATCAAAATGTCTATGTCCTCTATTTTTAGTAGACCAAGATTGGTTGTTAAGAAAGTTTTGGCTAGAGCTCAAAATGAAGGTGATGGTGCTATTGTTAGAAGAAGCATTGGAAG..................................................................................................................................................................................................GCCTGAATTGCAGAATCTTGATCCATTCCTCATGTTAGATGAGTTTAGTG..........................................................................................TTTCACAACCTGCTGGATTTCCTGACCATCCACACAGAGGTTTTGAGACTGTCACTTATATGTTGCAG........................................................................................................................................................................................GGAGCTTTTACTCATCAAGATTTTGCTGGTCACAAGGGTACAATCAGGACTGGTGATGTGCAG.............................................................................................................................................................................................................TGGATGACAGCAGGAAGAGGTATAGTTCATTCAGAAATGCCTGCTGGACCAGGTACTCAAAAGGGGTTGCAGCTTTGGATAAATTTATCTTCTAAGGACAAAAT.....................................................................................................................................................................................................................................................................................................................GATTGAGCCAAGGTATCAAGAATTGCTACACCAAGACATACCAAAGGCTGAAAAAGATGGTGTTTCGGTTACTATTTTAGCAGGGGAATCCATGGGGAAAAAATCACAAGTTTTCACGCGAACGCCTACAATGTACCTTGATTTCACCCTAAAACCAGGTTCTGAGCATCATCAACCGATCCCCGAGACCTGGAATGCCTTCCTCTACATAGTTGAAGGAGAGGGAGCGTTTGGTTCTTCGGATTCAACCACTACACCAGCTCACCATTGCTTGGTTTTAGGCCCTGGTGAAGGTCTAAGTGTGTGGAACAAATCTTCAAAGCCATTGAGGTTTGTTCTGATAGGAGGGCAACCGATTAACGAGCCTGTCGTGCAGTATGGTCCATTTGTTATGAACACTAAGAGTGAGATTATGCAGGCTTATCAAGATTATCAACTTGGAAAGAATGGATTTGAAAGATCAAGACAATGGTATTCTAAATGAGTAAACAGAGTTACATCTTATACTTCATGAACATTAAGTGCAATAGTCATTAGTTTTCTTAATGATTTCAAGTTGTGTTAGTCTTTGCTTTCATTTGAAATGTTATGTGTGTTGAGTGATGTATATTAGTGTTCATCTCCTTCATTTGTTAAAGATTGTATTTATAGTAATTTATGTTAGAGTTCTTGAATTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E744760" ref_strand="+" ref_description="SGN-E744760 [GI|6580546]">
      <seq>gcagtatggtccatttgttatgaacactaagagtgagattatgcaggcttatcaagattatcaacttggaaagaatggatttgaaagatcaagacaatggtattctaaatgagtaaacagagttacatcttatacttcatgaacattaagtgcaatagtcattagttttcttaatgatttcaagttgtgttagtctttgctttcatttgaaatgttatgtgtgttgagtgatgtatattagtgttcatctccttcatttgttaaagattgtatttatagtaatttatgttagagttcttgaattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="+" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="6938" stop="7844"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7238" g_stop="7551" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="314" r_length="314" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="+" ref_id="SGN-E744760" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>314</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E744760" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7238" e_stop="7551"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGTATGGTCCATTTGTTATGAACACTAAGAGTGAGATTATGCAGGCTTATCAAGATTATCAACTTGGAAAGAATGGATTTGAAAGATCAAGACAATGGTATTCTAAATGAGTAAACAGAGTTACATCTTATACTTCATGAACATTAAGTGCAATAGTCATTAGTTTTCTTAATGATTTCAAGTTGTGTTAGTCTTTGCTTTCATTTGAAATGTTATGTGTGTTGAGTGATGTTTATTAGTGTTCATTTCCTTCATTTGTTCAAGATTGTATTTATAGTAATTTATGTTAGAGTTCTTGAATTATATCTTAGC</genome_strand>
        <mrna_strand>GCAGTATGGTCCATTTGTTATGAACACTAAGAGTGAGATTATGCAGGCTTATCAAGATTATCAACTTGGAAAGAATGGATTTGAAAGATCAAGACAATGGTATTCTAAATGAGTAAACAGAGTTACATCTTATACTTCATGAACATTAAGTGCAATAGTCATTAGTTTTCTTAATGATTTCAAGTTGTGTTAGTCTTTGCTTTCATTTGAAATGTTATGTGTGTTGAGTGATGTATATTAGTGTTCATCTCCTTCATTTGTTAAAGATTGTATTTATAGTAATTTATGTTAGAGTTCTTGAATTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E206630" ref_strand="+" ref_description="SGN-E206630 [cLEC-31-J1]">
      <seq>accccttcccccctctctctctctctagatcaccagattgcattctttctctctctaaacctcaaaaagtttcaatttttcagcaaatggactcttcagaagatgagggtgaggagtatcttttcaagactgtaatcattggtgattctgcagtaggtaaatctaatttgcttacacgttatgcaagaaatgagtttaatttgcattcaaaagcaactattggagttgagtttcacacccacactcttgaaattgatggaaaagaagctaaagctcagatttgggatactgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="+" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="8416" stop="9309"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8716" g_stop="9009" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="294" r_length="294" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="+" ref_id="SGN-E206630" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>294</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206630" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8716" e_stop="9009"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCCTTCCCCCCTCTCTCTCTCTCTAGATCACCAGTTTGCATTCTTTCTCTCTCTAAACCTCAAAAAGTTTCAATTTTTCAGCAAATGGACTCTTCAGATGATGAGGGTGAGGAGTATCTTTTCAAGATTGTAATCATTGGTGATTCTGCAGTAGGTAAATCTAATTTGCTTACACGTTATGCAAGAAATGAGTTTAATTTGCATTCAAAAGCAACTATTGGAGTTGAGTTTCAGACCCAAACTCTTGAAATTGATGGAAAAGAAGTTAAAGCTCAGATTTGGGATACTGCTG</genome_strand>
        <mrna_strand>ACCCCTTCCCCCCTCTCTCTCTCTCTAGATCACCAGATTGCATTCTTTCTCTCTCTAAACCTCAAAAAGTTTCAATTTTTCAGCAAATGGACTCTTCAGAAGATGAGGGTGAGGAGTATCTTTTCAAGACTGTAATCATTGGTGATTCTGCAGTAGGTAAATCTAATTTGCTTACACGTTATGCAAGAAATGAGTTTAATTTGCATTCAAAAGCAACTATTGGAGTTGAGTTTCACACCCACACTCTTGAAATTGATGGAAAAGAAGCTAAAGCTCAGATTTGGGATACTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E459584" ref_strand="+" ref_description="SGN-E459584 [cPRO-28-E22]">
      <seq>cccctttccccctctctctctagatcaccattttccaattctttctctctcaaaacctcaaaaagtttcaatttttcaccaaatggactcttcagatgatgagggtgaggagtatcttttcaagattgtaatcattggtgattctgcagtaggtaaatctaatttgcttacacgttatgcaagaaatgagtttaatttgcattcaaaagcaactattggagttgagtttcagacccaaactcttgaaattgatggaaaagaagttaaagctcagatttgggatactgctggacaagaaaggtttagagctgtgacttctgcttattatcgtggtgcttttggtgctcttgttgtttatgatatttcaaggaggacaacttttgatagcatccctcgttggcttaatgaactcaaaactcattctgatacaacggttgcaaggatgctcgtgggaaacaaatgtgacttggagaacataagagctgtgagcgtagaagaaggcaaaagcctggcagaatcagaagggatgttcttcatggagacatctgccctcgattcaacaaacgtaaacaaggcttttgagattgtgattcgagagatctataatagtgttagcagaaaggttttgaattccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="+" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="8426" stop="12253"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8717" g_stop="9135" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="416" r_length="416" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9136" i_stop="11734" i_length="2599">
            <donor d_prob="0.993" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11735" g_stop="11953" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="635" r_length="219" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="+" ref_id="SGN-E459584" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E459584" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8717" e_stop="9135"/>
          <exon e_start="11735" e_stop="11953"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCTTCCCCCCTCTCTCTCTCTCTAGATCACCAGTTTGC-ATTCTTTCTCTCTCTAAACCTCAAAAAGTTTCAATTTTTCAGCAAATGGACTCTTCAGATGATGAGGGTGAGGAGTATCTTTTCAAGATTGTAATCATTGGTGATTCTGCAGTAGGTAAATCTAATTTGCTTACACGTTATGCAAGAAATGAGTTTAATTTGCATTCAAAAGCAACTATTGGAGTTGAGTTTCAGACCCAAACTCTTGAAATTGATGGAAAAGAAGTTAAAGCTCAGATTTGGGATACTGCTGGACAAGAAAGGTTTAGAGCTGTGACTTCTGCTTATTATCGTGGTGCTTTTGGTGCTCTTGTTGTTTATGATATTTCAAGAAGGACAACTTTTGATAGTATCCCTCGTTGGCTTGATGAACTCAAAAGTATGTATCTTTTTTGCTAAAAGTTCCATTTTTTAATTTTTATAAGTTGGTTTTGGTTTATGTTGAATTCTTATTTGTCATTCAAAGTTTTCACCTTTTTTGGTGGATTGGCTTGAGTTTAGTCTTTTGAGATTTGATGATGTTATGATGGAATGGTAATTCTTAGATTTGAATTCTACATTCTAGTTTATGTTGCTAAAAAAAATACTCTTTTGTTTAGCTTGGTTTTGGTTTATGTTGAATTCCCATCCAAGTTTTATGCATTGTCTTTGGTTTGTATATAGAAAATTCTCACCTTTTTGGTGGATTGGCTGTAAAGCTTAGTTTTTTTTAGATTTGATGGTGTTAGGATAGAATGGTAATTCTTAGATTTGACTTCTATATTCTTGTTTATGTTGCTAGTAGTCTTTTCTTTGTTTAGCTTGGTTTTGGTTTATGTTGAATTCCCATCAAAGTTGTATGCATATCTTTTGCTTTGTGCAAGAAAAGTTTTCACCTTTTTCAAATATGGTGAGGTTTTGGTGGATTGGCTATAAAGTTCAGTTCTTGAGGTTTTGATTATGCTATGATATAATGGTAATTCTTAGATTTGGCATTTGTTGCTAAAATTCTTCTCTTTTTCTAGACTTGGTTTTGTTTTATGTTCATCTAAGCTTTATGCATTGTCTTTTCTTTGTGCACAGAAAGTTCTCAACTTTTTGGTGGATTGGCTGTAAAGTCTATTTTTTTGAGAATTGACGGTGTTATGATAGAATGCTAGTTCTTTAGATTTGACTTCTACGTTATTCGTTTTGTTTATAATTAGTTATTGGATAAATTGACAAGTGAGTCGAGATCTGATTGTTGTATTCGTATGTCTCTGTTTCTACAAAAAAAATTGAACTTAATTTTGGTTCATGTTGAATTCCCACTTTTCAACTTGGTTTTGGCATATGTTGAGTTCCCATCAAAGTATGATACACATATTTTCTTTTTTTCATAAAAGTTCCTCACCTTTTTGAGATTTATTGAGGTTGGTAGTATAAAGTTCAGTTTTTGAGATTTGATGGTGTTATGACATGATGGCAATTCTGGAATTTGACTTCCACATTCTTGGTTCTTGATTATAACTTATAAGTATGTAAGATATCTTGTAGATCCGAAAAGTCTTGGCTACTTTAACTATTTAGGACGATGGAATATGCCATAAGGGTAATTTTAATCGAGTTTTTCTAGAATTGAATAATGGATGTGTTCAATCTATATTTTTTGAATCTTGTTTTGGTTCCGATAACTTTTCTCTTTAACTGAATAATGTAAGATTTTACAGTTGCTATTAAGTCTAATTCAATCATTTTAGTAAAAAATTACTTACCAGACATAGAAACAAATGGCAATGTTAGCTAGAAAAATCTTGAGTCTTGATTATGTATCATTGTTACTTGAAGCAATGGCAAAGAAAGCGGTATATATGCCAATGTAGCTGTTATGCTCAATTTTGTCTAGATGCAGTTGGGAACCTATGATAAGAACGAATTAGACAGACTGTCAATTGGATGTATATTAGGAATTGGAATTCAAGTCATGCTTTTCTTTCTCCGAAAAGCCAATCCAAATGAACTTCTCAACGGATCATACTTATATGGAATCTGTTTTATTTGCTTGATTGTGAAAATAATTAGGACCAACAACCTGGCTTACCTACGTATGGTATTATGGTAGACTAAGGAGTCTCACGGATTGATAAAAAATCTCAGAGATTCTTTTGATGTTAAATGGTGCCATATTTATAACTTAGGTAGTCTCTCTGTTAAGCCCTTAGCTAACTAAGTTTTGGCTGGACGGGAGTGTATATTTGTTGCTTTGAGCCGTGAGCTGCTATGTGATACTTGCATGACCTTATTTTGTTATTCAAATCTGTTCTTGTCTTGCAAATATCATTTGAATCTTGAAAATGAATGACTTTGTGCTCACTGTTTCCAAAATTGAGAACTTTTAGAACTTAATGTCCATAATATAGATCGAGGAGTATTAACTCTTGATCTATCAGAATGAGTGGATCAGATACAAGGCCGTTTGCCCAAGTTCAAGATGTTAGCTTGAGCCCTGACATGGTCCGAGATCCCTATCTTTAAGGCCATTAAAGAACCCAGGGCCAGGGAAATGTGATAAACAGAATGTTAACATTTGCAGCATATATAACCACAAATGAGGTTTGTACTCCACAAGCTTCATTTAATCACGAGATGAAATGAGCAGAGGATTATGTCATCAAAATCAAAGTCAGTGTTAATAAGGTGCATCATTTTGCTTCCTGGTGTGATGGAGACAATGAAGTAGTTAATAGCGACTTAAGGAAATTCAGATACATACTTTTGAAGGAAATATATGTAGTAATATTAAGTTTTACAGACTCTTTATAGGTGCAGGTGCTGTACTTGAACTTTGCATTCACGAGCTTATTTATCACACTTTGCCTTGGAATGATACTCTCTGCTGTCGGGAATCCCAACTTTTATTTATACCGTTATAGTATTAGGTGTGCAAATTACATGTTATGGTGGTGTTCTATATGTTCTTCATACTCCCAATCATAACTGAAATAACCATTTTCATGCAGCTCATTCGGATACAACGGTTGCAAGGATACTGGTGGGAAACAAATGTGACTTGGAGAATATAAGAGCTGTGAGCGTAGAAGAAGGCAAAAGCCTGGCAGAATCAGAAGGGATGTTCTTCATGGAGACATCTGCCCTCGATTCAACAAACGTGAACAAGGCTTTCGAGATTGTGATTCGAGAGATCTATAATAGTGTTAGCAGAAAGGTTTTGAATTCCG</genome_strand>
        <mrna_strand>CCCCTTTC-CCC-CTC--TCTCTCTAGATCACCATTTTCCAATTCTTTCTCTCTCAAAACCTCAAAAAGTTTCAATTTTTCACCAAATGGACTCTTCAGATGATGAGGGTGAGGAGTATCTTTTCAAGATTGTAATCATTGGTGATTCTGCAGTAGGTAAATCTAATTTGCTTACACGTTATGCAAGAAATGAGTTTAATTTGCATTCAAAAGCAACTATTGGAGTTGAGTTTCAGACCCAAACTCTTGAAATTGATGGAAAAGAAGTTAAAGCTCAGATTTGGGATACTGCTGGACAAGAAAGGTTTAGAGCTGTGACTTCTGCTTATTATCGTGGTGCTTTTGGTGCTCTTGTTGTTTATGATATTTCAAGGAGGACAACTTTTGATAGCATCCCTCGTTGGCTTAATGAACTCAAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCATTCTGATACAACGGTTGCAAGGATGCTCGTGGGAAACAAATGTGACTTGGAGAACATAAGAGCTGTGAGCGTAGAAGAAGGCAAAAGCCTGGCAGAATCAGAAGGGATGTTCTTCATGGAGACATCTGCCCTCGATTCAACAAACGTAAACAAGGCTTTTGAGATTGTGATTCGAGAGATCTATAATAGTGTTAGCAGAAAGGTTTTGAATTCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E435922" ref_strand="+" ref_description="SGN-E435922 [STM-62-C12]">
      <seq>cccctttccccctctctctctagatcaccattttccaattctttctctctcaaaacctcaaaaagtttcaatttttcaccaaatggactcttcagatgatgagggtgaggagtatcttttcaagattgtaatcattggtgattctgcagtaggtaaatctaatttgcttacacgttatgcaagaaatgagtttaatttgcattcaaaagcaactattggagttgagtttcagacccaaactcttgaaattgatggaaaagaagttaaagctcagatttgggatactgctggacaagaaaggtttagagctgtgacttctgcttattatcgtggtgcttttggtgctcttgttgtttatgatatttcaaggaggacaacttttgatagcatccctcgttggcttaatgaactcaaaactcattctgatacaacggttgcaaggatgctcgtgggaaacaaatgtgacttggagaacataagagctgtgagcgtagaagaaggcaaaagcctggcagaatcagaaaggatgttcttcatggagacatctgccctcgattcaacaaacgtaaaacaagcttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="+" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="8426" stop="12199"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8717" g_stop="9135" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="416" r_length="416" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9136" i_stop="11734" i_length="2599">
            <donor d_prob="0.993" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11735" g_stop="11899" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="581" r_length="165" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="+" ref_id="SGN-E435922" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E435922" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8717" e_stop="9135"/>
          <exon e_start="11735" e_stop="11899"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCTTCCCCCCTCTCTCTCTCTCTAGATCACCAGTTTGC-ATTCTTTCTCTCTCTAAACCTCAAAAAGTTTCAATTTTTCAGCAAATGGACTCTTCAGATGATGAGGGTGAGGAGTATCTTTTCAAGATTGTAATCATTGGTGATTCTGCAGTAGGTAAATCTAATTTGCTTACACGTTATGCAAGAAATGAGTTTAATTTGCATTCAAAAGCAACTATTGGAGTTGAGTTTCAGACCCAAACTCTTGAAATTGATGGAAAAGAAGTTAAAGCTCAGATTTGGGATACTGCTGGACAAGAAAGGTTTAGAGCTGTGACTTCTGCTTATTATCGTGGTGCTTTTGGTGCTCTTGTTGTTTATGATATTTCAAGAAGGACAACTTTTGATAGTATCCCTCGTTGGCTTGATGAACTCAAAAGTATGTATCTTTTTTGCTAAAAGTTCCATTTTTTAATTTTTATAAGTTGGTTTTGGTTTATGTTGAATTCTTATTTGTCATTCAAAGTTTTCACCTTTTTTGGTGGATTGGCTTGAGTTTAGTCTTTTGAGATTTGATGATGTTATGATGGAATGGTAATTCTTAGATTTGAATTCTACATTCTAGTTTATGTTGCTAAAAAAAATACTCTTTTGTTTAGCTTGGTTTTGGTTTATGTTGAATTCCCATCCAAGTTTTATGCATTGTCTTTGGTTTGTATATAGAAAATTCTCACCTTTTTGGTGGATTGGCTGTAAAGCTTAGTTTTTTTTAGATTTGATGGTGTTAGGATAGAATGGTAATTCTTAGATTTGACTTCTATATTCTTGTTTATGTTGCTAGTAGTCTTTTCTTTGTTTAGCTTGGTTTTGGTTTATGTTGAATTCCCATCAAAGTTGTATGCATATCTTTTGCTTTGTGCAAGAAAAGTTTTCACCTTTTTCAAATATGGTGAGGTTTTGGTGGATTGGCTATAAAGTTCAGTTCTTGAGGTTTTGATTATGCTATGATATAATGGTAATTCTTAGATTTGGCATTTGTTGCTAAAATTCTTCTCTTTTTCTAGACTTGGTTTTGTTTTATGTTCATCTAAGCTTTATGCATTGTCTTTTCTTTGTGCACAGAAAGTTCTCAACTTTTTGGTGGATTGGCTGTAAAGTCTATTTTTTTGAGAATTGACGGTGTTATGATAGAATGCTAGTTCTTTAGATTTGACTTCTACGTTATTCGTTTTGTTTATAATTAGTTATTGGATAAATTGACAAGTGAGTCGAGATCTGATTGTTGTATTCGTATGTCTCTGTTTCTACAAAAAAAATTGAACTTAATTTTGGTTCATGTTGAATTCCCACTTTTCAACTTGGTTTTGGCATATGTTGAGTTCCCATCAAAGTATGATACACATATTTTCTTTTTTTCATAAAAGTTCCTCACCTTTTTGAGATTTATTGAGGTTGGTAGTATAAAGTTCAGTTTTTGAGATTTGATGGTGTTATGACATGATGGCAATTCTGGAATTTGACTTCCACATTCTTGGTTCTTGATTATAACTTATAAGTATGTAAGATATCTTGTAGATCCGAAAAGTCTTGGCTACTTTAACTATTTAGGACGATGGAATATGCCATAAGGGTAATTTTAATCGAGTTTTTCTAGAATTGAATAATGGATGTGTTCAATCTATATTTTTTGAATCTTGTTTTGGTTCCGATAACTTTTCTCTTTAACTGAATAATGTAAGATTTTACAGTTGCTATTAAGTCTAATTCAATCATTTTAGTAAAAAATTACTTACCAGACATAGAAACAAATGGCAATGTTAGCTAGAAAAATCTTGAGTCTTGATTATGTATCATTGTTACTTGAAGCAATGGCAAAGAAAGCGGTATATATGCCAATGTAGCTGTTATGCTCAATTTTGTCTAGATGCAGTTGGGAACCTATGATAAGAACGAATTAGACAGACTGTCAATTGGATGTATATTAGGAATTGGAATTCAAGTCATGCTTTTCTTTCTCCGAAAAGCCAATCCAAATGAACTTCTCAACGGATCATACTTATATGGAATCTGTTTTATTTGCTTGATTGTGAAAATAATTAGGACCAACAACCTGGCTTACCTACGTATGGTATTATGGTAGACTAAGGAGTCTCACGGATTGATAAAAAATCTCAGAGATTCTTTTGATGTTAAATGGTGCCATATTTATAACTTAGGTAGTCTCTCTGTTAAGCCCTTAGCTAACTAAGTTTTGGCTGGACGGGAGTGTATATTTGTTGCTTTGAGCCGTGAGCTGCTATGTGATACTTGCATGACCTTATTTTGTTATTCAAATCTGTTCTTGTCTTGCAAATATCATTTGAATCTTGAAAATGAATGACTTTGTGCTCACTGTTTCCAAAATTGAGAACTTTTAGAACTTAATGTCCATAATATAGATCGAGGAGTATTAACTCTTGATCTATCAGAATGAGTGGATCAGATACAAGGCCGTTTGCCCAAGTTCAAGATGTTAGCTTGAGCCCTGACATGGTCCGAGATCCCTATCTTTAAGGCCATTAAAGAACCCAGGGCCAGGGAAATGTGATAAACAGAATGTTAACATTTGCAGCATATATAACCACAAATGAGGTTTGTACTCCACAAGCTTCATTTAATCACGAGATGAAATGAGCAGAGGATTATGTCATCAAAATCAAAGTCAGTGTTAATAAGGTGCATCATTTTGCTTCCTGGTGTGATGGAGACAATGAAGTAGTTAATAGCGACTTAAGGAAATTCAGATACATACTTTTGAAGGAAATATATGTAGTAATATTAAGTTTTACAGACTCTTTATAGGTGCAGGTGCTGTACTTGAACTTTGCATTCACGAGCTTATTTATCACACTTTGCCTTGGAATGATACTCTCTGCTGTCGGGAATCCCAACTTTTATTTATACCGTTATAGTATTAGGTGTGCAAATTACATGTTATGGTGGTGTTCTATATGTTCTTCATACTCCCAATCATAACTGAAATAACCATTTTCATGCAGCTCATTCGGATACAACGGTTGCAAGGATACTGGTGGGAAACAAATGTGACTTGGAGAATATAAGAGCTGTGAGCGTAGAAGAAGGCAAAAGCCTGGCAGAATCAGAAGGGATGTTCTTCATGGAGACATCTGCCCTCGATTCAACAAACGTGAACAAGGCTTTCG</genome_strand>
        <mrna_strand>CCCCTTTC-CCC-CTC--TCTCTCTAGATCACCATTTTCCAATTCTTTCTCTCTCAAAACCTCAAAAAGTTTCAATTTTTCACCAAATGGACTCTTCAGATGATGAGGGTGAGGAGTATCTTTTCAAGATTGTAATCATTGGTGATTCTGCAGTAGGTAAATCTAATTTGCTTACACGTTATGCAAGAAATGAGTTTAATTTGCATTCAAAAGCAACTATTGGAGTTGAGTTTCAGACCCAAACTCTTGAAATTGATGGAAAAGAAGTTAAAGCTCAGATTTGGGATACTGCTGGACAAGAAAGGTTTAGAGCTGTGACTTCTGCTTATTATCGTGGTGCTTTTGGTGCTCTTGTTGTTTATGATATTTCAAGGAGGACAACTTTTGATAGCATCCCTCGTTGGCTTAATGAACTCAAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCATTCTGATACAACGGTTGCAAGGATGCTCGTGGGAAACAAATGTGACTTGGAGAACATAAGAGCTGTGAGCGTAGAAGAAGGCAAAAGCCTGGCAGAATCAGAAAGGATGTTCTTCATGGAGACATCTGCCCTCGATTCAACAAACGTAAAACAAGCTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E204292" ref_strand="+" ref_description="SGN-E204292 [cLEC-13-N22]">
      <seq>cttcccccctctctctctctctagatcaccagtttgcattctttctctctctaaacctcaaaaagtttcaatttttcagcaaatggactcttcagatgatgagggtgaggagtatcttttcaagattgtaatcattggtgattctgcagtaggtaaatctaatttgcttacacgttatgcaagaaatgagtttaatttgcattcaaaagcaactattggagttgagtttcagacccaaactcttgaaattgatggaaaagaagttaaagctcagatttgggatactgctggacaagaaaggtttagagctgtgacttctgcttattatcgtggtgcttttggtgctcttgttgtttatgatatttcaagaaggacaacttttgatagtatccctcgttggcttgatgaactcaaaactcattcggatacaacggttgcaaggatactggtgggaaacaaatgtgacttggagaatataagagctgtgagcgtaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="+" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="8420" stop="12113"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8720" g_stop="9135" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="416" r_length="416" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9136" i_stop="11734" i_length="2599">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11735" g_stop="11813" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="495" r_length="79" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="+" ref_id="SGN-E204292" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204292" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8720" e_stop="9135"/>
          <exon e_start="11735" e_stop="11813"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCCCCCCTCTCTCTCTCTCTAGATCACCAGTTTGCATTCTTTCTCTCTCTAAACCTCAAAAAGTTTCAATTTTTCAGCAAATGGACTCTTCAGATGATGAGGGTGAGGAGTATCTTTTCAAGATTGTAATCATTGGTGATTCTGCAGTAGGTAAATCTAATTTGCTTACACGTTATGCAAGAAATGAGTTTAATTTGCATTCAAAAGCAACTATTGGAGTTGAGTTTCAGACCCAAACTCTTGAAATTGATGGAAAAGAAGTTAAAGCTCAGATTTGGGATACTGCTGGACAAGAAAGGTTTAGAGCTGTGACTTCTGCTTATTATCGTGGTGCTTTTGGTGCTCTTGTTGTTTATGATATTTCAAGAAGGACAACTTTTGATAGTATCCCTCGTTGGCTTGATGAACTCAAAAGTATGTATCTTTTTTGCTAAAAGTTCCATTTTTTAATTTTTATAAGTTGGTTTTGGTTTATGTTGAATTCTTATTTGTCATTCAAAGTTTTCACCTTTTTTGGTGGATTGGCTTGAGTTTAGTCTTTTGAGATTTGATGATGTTATGATGGAATGGTAATTCTTAGATTTGAATTCTACATTCTAGTTTATGTTGCTAAAAAAAATACTCTTTTGTTTAGCTTGGTTTTGGTTTATGTTGAATTCCCATCCAAGTTTTATGCATTGTCTTTGGTTTGTATATAGAAAATTCTCACCTTTTTGGTGGATTGGCTGTAAAGCTTAGTTTTTTTTAGATTTGATGGTGTTAGGATAGAATGGTAATTCTTAGATTTGACTTCTATATTCTTGTTTATGTTGCTAGTAGTCTTTTCTTTGTTTAGCTTGGTTTTGGTTTATGTTGAATTCCCATCAAAGTTGTATGCATATCTTTTGCTTTGTGCAAGAAAAGTTTTCACCTTTTTCAAATATGGTGAGGTTTTGGTGGATTGGCTATAAAGTTCAGTTCTTGAGGTTTTGATTATGCTATGATATAATGGTAATTCTTAGATTTGGCATTTGTTGCTAAAATTCTTCTCTTTTTCTAGACTTGGTTTTGTTTTATGTTCATCTAAGCTTTATGCATTGTCTTTTCTTTGTGCACAGAAAGTTCTCAACTTTTTGGTGGATTGGCTGTAAAGTCTATTTTTTTGAGAATTGACGGTGTTATGATAGAATGCTAGTTCTTTAGATTTGACTTCTACGTTATTCGTTTTGTTTATAATTAGTTATTGGATAAATTGACAAGTGAGTCGAGATCTGATTGTTGTATTCGTATGTCTCTGTTTCTACAAAAAAAATTGAACTTAATTTTGGTTCATGTTGAATTCCCACTTTTCAACTTGGTTTTGGCATATGTTGAGTTCCCATCAAAGTATGATACACATATTTTCTTTTTTTCATAAAAGTTCCTCACCTTTTTGAGATTTATTGAGGTTGGTAGTATAAAGTTCAGTTTTTGAGATTTGATGGTGTTATGACATGATGGCAATTCTGGAATTTGACTTCCACATTCTTGGTTCTTGATTATAACTTATAAGTATGTAAGATATCTTGTAGATCCGAAAAGTCTTGGCTACTTTAACTATTTAGGACGATGGAATATGCCATAAGGGTAATTTTAATCGAGTTTTTCTAGAATTGAATAATGGATGTGTTCAATCTATATTTTTTGAATCTTGTTTTGGTTCCGATAACTTTTCTCTTTAACTGAATAATGTAAGATTTTACAGTTGCTATTAAGTCTAATTCAATCATTTTAGTAAAAAATTACTTACCAGACATAGAAACAAATGGCAATGTTAGCTAGAAAAATCTTGAGTCTTGATTATGTATCATTGTTACTTGAAGCAATGGCAAAGAAAGCGGTATATATGCCAATGTAGCTGTTATGCTCAATTTTGTCTAGATGCAGTTGGGAACCTATGATAAGAACGAATTAGACAGACTGTCAATTGGATGTATATTAGGAATTGGAATTCAAGTCATGCTTTTCTTTCTCCGAAAAGCCAATCCAAATGAACTTCTCAACGGATCATACTTATATGGAATCTGTTTTATTTGCTTGATTGTGAAAATAATTAGGACCAACAACCTGGCTTACCTACGTATGGTATTATGGTAGACTAAGGAGTCTCACGGATTGATAAAAAATCTCAGAGATTCTTTTGATGTTAAATGGTGCCATATTTATAACTTAGGTAGTCTCTCTGTTAAGCCCTTAGCTAACTAAGTTTTGGCTGGACGGGAGTGTATATTTGTTGCTTTGAGCCGTGAGCTGCTATGTGATACTTGCATGACCTTATTTTGTTATTCAAATCTGTTCTTGTCTTGCAAATATCATTTGAATCTTGAAAATGAATGACTTTGTGCTCACTGTTTCCAAAATTGAGAACTTTTAGAACTTAATGTCCATAATATAGATCGAGGAGTATTAACTCTTGATCTATCAGAATGAGTGGATCAGATACAAGGCCGTTTGCCCAAGTTCAAGATGTTAGCTTGAGCCCTGACATGGTCCGAGATCCCTATCTTTAAGGCCATTAAAGAACCCAGGGCCAGGGAAATGTGATAAACAGAATGTTAACATTTGCAGCATATATAACCACAAATGAGGTTTGTACTCCACAAGCTTCATTTAATCACGAGATGAAATGAGCAGAGGATTATGTCATCAAAATCAAAGTCAGTGTTAATAAGGTGCATCATTTTGCTTCCTGGTGTGATGGAGACAATGAAGTAGTTAATAGCGACTTAAGGAAATTCAGATACATACTTTTGAAGGAAATATATGTAGTAATATTAAGTTTTACAGACTCTTTATAGGTGCAGGTGCTGTACTTGAACTTTGCATTCACGAGCTTATTTATCACACTTTGCCTTGGAATGATACTCTCTGCTGTCGGGAATCCCAACTTTTATTTATACCGTTATAGTATTAGGTGTGCAAATTACATGTTATGGTGGTGTTCTATATGTTCTTCATACTCCCAATCATAACTGAAATAACCATTTTCATGCAGCTCATTCGGATACAACGGTTGCAAGGATACTGGTGGGAAACAAATGTGACTTGGAGAATATAAGAGCTGTGAGCGTAGA</genome_strand>
        <mrna_strand>CTTCCCCCCTCTCTCTCTCTCTAGATCACCAGTTTGCATTCTTTCTCTCTCTAAACCTCAAAAAGTTTCAATTTTTCAGCAAATGGACTCTTCAGATGATGAGGGTGAGGAGTATCTTTTCAAGATTGTAATCATTGGTGATTCTGCAGTAGGTAAATCTAATTTGCTTACACGTTATGCAAGAAATGAGTTTAATTTGCATTCAAAAGCAACTATTGGAGTTGAGTTTCAGACCCAAACTCTTGAAATTGATGGAAAAGAAGTTAAAGCTCAGATTTGGGATACTGCTGGACAAGAAAGGTTTAGAGCTGTGACTTCTGCTTATTATCGTGGTGCTTTTGGTGCTCTTGTTGTTTATGATATTTCAAGAAGGACAACTTTTGATAGTATCCCTCGTTGGCTTGATGAACTCAAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCATTCGGATACAACGGTTGCAAGGATACTGGTGGGAAACAAATGTGACTTGGAGAATATAAGAGCTGTGAGCGTAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E375387" ref_strand="+" ref_description="SGN-E375387 [TUS-15-H2]">
      <seq>cttcccccctctctctctctctagatcaccagtttgcattctttctctctctaaacctcaaaaagtttcaatttttcagcaaatggactcttcagatgatgagggtgaggagtatcttttcaagattgtaatcattggtgattctgcagtaggtaaatctaatttgcttacacgttatgcaagaaatgagtttaatttgcattcaaaagcaactattggagttgagtttcagacccacactcttgaaattgatggaaaagaagttaaagctcagatttgggatactgctggacaagaaaggtttagagctgggacttctgcttattatcgtggtgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="+" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="8420" stop="9357"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8720" g_stop="9057" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="338" r_length="338" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="+" ref_id="SGN-E375387" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>338</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375387" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8720" e_stop="9057"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCCCCCCTCTCTCTCTCTCTAGATCACCAGTTTGCATTCTTTCTCTCTCTAAACCTCAAAAAGTTTCAATTTTTCAGCAAATGGACTCTTCAGATGATGAGGGTGAGGAGTATCTTTTCAAGATTGTAATCATTGGTGATTCTGCAGTAGGTAAATCTAATTTGCTTACACGTTATGCAAGAAATGAGTTTAATTTGCATTCAAAAGCAACTATTGGAGTTGAGTTTCAGACCCAAACTCTTGAAATTGATGGAAAAGAAGTTAAAGCTCAGATTTGGGATACTGCTGGACAAGAAAGGTTTAGAGCTGTGACTTCTGCTTATTATCGTGGTGCTT</genome_strand>
        <mrna_strand>CTTCCCCCCTCTCTCTCTCTCTAGATCACCAGTTTGCATTCTTTCTCTCTCTAAACCTCAAAAAGTTTCAATTTTTCAGCAAATGGACTCTTCAGATGATGAGGGTGAGGAGTATCTTTTCAAGATTGTAATCATTGGTGATTCTGCAGTAGGTAAATCTAATTTGCTTACACGTTATGCAAGAAATGAGTTTAATTTGCATTCAAAAGCAACTATTGGAGTTGAGTTTCAGACCCACACTCTTGAAATTGATGGAAAAGAAGTTAAAGCTCAGATTTGGGATACTGCTGGACAAGAAAGGTTTAGAGCTGGGACTTCTGCTTATTATCGTGGTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E205434" ref_strand="+" ref_description="SGN-E205434 [cLEC-28-L19]">
      <seq>ttcccccctctctctctctctagatcaccagtttgcattctttctctctctaaacctcaaaaagtttcaatttttcagcaaatggactcttcagatgatgagggtgaggagtatcttttcaagattgtaatcattggtgattctgcagtaggtaaatctaatttgcttacacgttatgcaagaaatgagtttaatttgcattcaaaagcaactattggagttgagtttcagacccaaactcttgaaattgatggaaaagaagttaaagctcagatttgggatactgctggacaagaaaggtttagagctgtgacttctgcttattatcgtggtgcttttggtgctcttgttgtttatgatatttcaagaaggacaacttttgatagtatccctcgttggcttgatgaactcaaaactcattcggatacaacggttgcaaggatactggtgggaaacaaatgtgacttggagaatataagagctgtgagcgtagaagaaggcaaaagcctggcagaatcagaagggatgttcttcatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="+" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="8421" stop="12157"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8721" g_stop="9135" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="415" r_length="415" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9136" i_stop="11734" i_length="2599">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11735" g_stop="11857" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="538" r_length="123" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="+" ref_id="SGN-E205434" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8721" e_stop="9135"/>
          <exon e_start="11735" e_stop="11857"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCCCCCTCTCTCTCTCTCTAGATCACCAGTTTGCATTCTTTCTCTCTCTAAACCTCAAAAAGTTTCAATTTTTCAGCAAATGGACTCTTCAGATGATGAGGGTGAGGAGTATCTTTTCAAGATTGTAATCATTGGTGATTCTGCAGTAGGTAAATCTAATTTGCTTACACGTTATGCAAGAAATGAGTTTAATTTGCATTCAAAAGCAACTATTGGAGTTGAGTTTCAGACCCAAACTCTTGAAATTGATGGAAAAGAAGTTAAAGCTCAGATTTGGGATACTGCTGGACAAGAAAGGTTTAGAGCTGTGACTTCTGCTTATTATCGTGGTGCTTTTGGTGCTCTTGTTGTTTATGATATTTCAAGAAGGACAACTTTTGATAGTATCCCTCGTTGGCTTGATGAACTCAAAAGTATGTATCTTTTTTGCTAAAAGTTCCATTTTTTAATTTTTATAAGTTGGTTTTGGTTTATGTTGAATTCTTATTTGTCATTCAAAGTTTTCACCTTTTTTGGTGGATTGGCTTGAGTTTAGTCTTTTGAGATTTGATGATGTTATGATGGAATGGTAATTCTTAGATTTGAATTCTACATTCTAGTTTATGTTGCTAAAAAAAATACTCTTTTGTTTAGCTTGGTTTTGGTTTATGTTGAATTCCCATCCAAGTTTTATGCATTGTCTTTGGTTTGTATATAGAAAATTCTCACCTTTTTGGTGGATTGGCTGTAAAGCTTAGTTTTTTTTAGATTTGATGGTGTTAGGATAGAATGGTAATTCTTAGATTTGACTTCTATATTCTTGTTTATGTTGCTAGTAGTCTTTTCTTTGTTTAGCTTGGTTTTGGTTTATGTTGAATTCCCATCAAAGTTGTATGCATATCTTTTGCTTTGTGCAAGAAAAGTTTTCACCTTTTTCAAATATGGTGAGGTTTTGGTGGATTGGCTATAAAGTTCAGTTCTTGAGGTTTTGATTATGCTATGATATAATGGTAATTCTTAGATTTGGCATTTGTTGCTAAAATTCTTCTCTTTTTCTAGACTTGGTTTTGTTTTATGTTCATCTAAGCTTTATGCATTGTCTTTTCTTTGTGCACAGAAAGTTCTCAACTTTTTGGTGGATTGGCTGTAAAGTCTATTTTTTTGAGAATTGACGGTGTTATGATAGAATGCTAGTTCTTTAGATTTGACTTCTACGTTATTCGTTTTGTTTATAATTAGTTATTGGATAAATTGACAAGTGAGTCGAGATCTGATTGTTGTATTCGTATGTCTCTGTTTCTACAAAAAAAATTGAACTTAATTTTGGTTCATGTTGAATTCCCACTTTTCAACTTGGTTTTGGCATATGTTGAGTTCCCATCAAAGTATGATACACATATTTTCTTTTTTTCATAAAAGTTCCTCACCTTTTTGAGATTTATTGAGGTTGGTAGTATAAAGTTCAGTTTTTGAGATTTGATGGTGTTATGACATGATGGCAATTCTGGAATTTGACTTCCACATTCTTGGTTCTTGATTATAACTTATAAGTATGTAAGATATCTTGTAGATCCGAAAAGTCTTGGCTACTTTAACTATTTAGGACGATGGAATATGCCATAAGGGTAATTTTAATCGAGTTTTTCTAGAATTGAATAATGGATGTGTTCAATCTATATTTTTTGAATCTTGTTTTGGTTCCGATAACTTTTCTCTTTAACTGAATAATGTAAGATTTTACAGTTGCTATTAAGTCTAATTCAATCATTTTAGTAAAAAATTACTTACCAGACATAGAAACAAATGGCAATGTTAGCTAGAAAAATCTTGAGTCTTGATTATGTATCATTGTTACTTGAAGCAATGGCAAAGAAAGCGGTATATATGCCAATGTAGCTGTTATGCTCAATTTTGTCTAGATGCAGTTGGGAACCTATGATAAGAACGAATTAGACAGACTGTCAATTGGATGTATATTAGGAATTGGAATTCAAGTCATGCTTTTCTTTCTCCGAAAAGCCAATCCAAATGAACTTCTCAACGGATCATACTTATATGGAATCTGTTTTATTTGCTTGATTGTGAAAATAATTAGGACCAACAACCTGGCTTACCTACGTATGGTATTATGGTAGACTAAGGAGTCTCACGGATTGATAAAAAATCTCAGAGATTCTTTTGATGTTAAATGGTGCCATATTTATAACTTAGGTAGTCTCTCTGTTAAGCCCTTAGCTAACTAAGTTTTGGCTGGACGGGAGTGTATATTTGTTGCTTTGAGCCGTGAGCTGCTATGTGATACTTGCATGACCTTATTTTGTTATTCAAATCTGTTCTTGTCTTGCAAATATCATTTGAATCTTGAAAATGAATGACTTTGTGCTCACTGTTTCCAAAATTGAGAACTTTTAGAACTTAATGTCCATAATATAGATCGAGGAGTATTAACTCTTGATCTATCAGAATGAGTGGATCAGATACAAGGCCGTTTGCCCAAGTTCAAGATGTTAGCTTGAGCCCTGACATGGTCCGAGATCCCTATCTTTAAGGCCATTAAAGAACCCAGGGCCAGGGAAATGTGATAAACAGAATGTTAACATTTGCAGCATATATAACCACAAATGAGGTTTGTACTCCACAAGCTTCATTTAATCACGAGATGAAATGAGCAGAGGATTATGTCATCAAAATCAAAGTCAGTGTTAATAAGGTGCATCATTTTGCTTCCTGGTGTGATGGAGACAATGAAGTAGTTAATAGCGACTTAAGGAAATTCAGATACATACTTTTGAAGGAAATATATGTAGTAATATTAAGTTTTACAGACTCTTTATAGGTGCAGGTGCTGTACTTGAACTTTGCATTCACGAGCTTATTTATCACACTTTGCCTTGGAATGATACTCTCTGCTGTCGGGAATCCCAACTTTTATTTATACCGTTATAGTATTAGGTGTGCAAATTACATGTTATGGTGGTGTTCTATATGTTCTTCATACTCCCAATCATAACTGAAATAACCATTTTCATGCAGCTCATTCGGATACAACGGTTGCAAGGATACTGGTGGGAAACAAATGTGACTTGGAGAATATAAGAGCTGTGAGCGTAGAAGAAGGCAAAAGCCTGGCAGAATCAGAAGGGATGTTCTTCATGG</genome_strand>
        <mrna_strand>TTCCCCCCTCTCTCTCTCTCTAGATCACCAGTTTGCATTCTTTCTCTCTCTAAACCTCAAAAAGTTTCAATTTTTCAGCAAATGGACTCTTCAGATGATGAGGGTGAGGAGTATCTTTTCAAGATTGTAATCATTGGTGATTCTGCAGTAGGTAAATCTAATTTGCTTACACGTTATGCAAGAAATGAGTTTAATTTGCATTCAAAAGCAACTATTGGAGTTGAGTTTCAGACCCAAACTCTTGAAATTGATGGAAAAGAAGTTAAAGCTCAGATTTGGGATACTGCTGGACAAGAAAGGTTTAGAGCTGTGACTTCTGCTTATTATCGTGGTGCTTTTGGTGCTCTTGTTGTTTATGATATTTCAAGAAGGACAACTTTTGATAGTATCCCTCGTTGGCTTGATGAACTCAAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCATTCGGATACAACGGTTGCAAGGATACTGGTGGGAAACAAATGTGACTTGGAGAATATAAGAGCTGTGAGCGTAGAAGAAGGCAAAAGCCTGGCAGAATCAGAAGGGATGTTCTTCATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E261008" ref_strand="+" ref_description="SGN-E261008 [cLEG-55-A14]">
      <seq>ccagtttgcattctttctctctctaaacctcaaaaagtttcaatttttcagcaaatggactcttcagatgatgagggtgaggagtatcttttcaagattgtaatcattggtgattctgcagtaggtatatctaatttgcttacacgttatgcaagaaatgagtttaatttgcattcaaaagcatctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="+" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="8448" stop="9235"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8748" g_stop="8935" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="+" ref_id="SGN-E261008" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>188</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261008" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8748" e_stop="8935"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGTTTGCATTCTTTCTCTCTCTAAACCTCAAAAAGTTTCAATTTTTCAGCAAATGGACTCTTCAGATGATGAGGGTGAGGAGTATCTTTTCAAGATTGTAATCATTGGTGATTCTGCAGTAGGTAAATCTAATTTGCTTACACGTTATGCAAGAAATGAGTTTAATTTGCATTCAAAAGCAACTAT</genome_strand>
        <mrna_strand>CCAGTTTGCATTCTTTCTCTCTCTAAACCTCAAAAAGTTTCAATTTTTCAGCAAATGGACTCTTCAGATGATGAGGGTGAGGAGTATCTTTTCAAGATTGTAATCATTGGTGATTCTGCAGTAGGTATATCTAATTTGCTTACACGTTATGCAAGAAATGAGTTTAATTTGCATTCAAAAGCATCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E344534" ref_strand="+" ref_description="SGN-E344534 [cTOF-14-J16]">
      <seq>tttgcattctttctctctctaaacctcaaaaagtttcaatttttcagcaaatggactcttcagatgatgagggtgaggagtatcttttcaagattgtaatcattggtgattctgcagtaggtaaatctaatttgcttacacgttatgcaagaaatgagtttaatttgcattcaaaagcaactattggagttgagtttcagacccaaactcttgaaattgatggaaaagaagttaaagctcagatttgggatactgctggacaagaaaggtttagagctgtgacttctgcttattatcgtggtgcttttggtgctcttgttgtttatgatatttcaagaaggacaacttttgatagtatccctcgttggcttgatgaactcaaaactcattcggatacaacggttgcaaggatactggtgggaaacaaatgtgacttggagaatataagagctgtgagcgtagaagaaggcaaaagcctggcagaatcagaagggatgttcttcatggagacatctgccctcgattcaacaaacgtgaacaaggctttcgagattgtgattcgagagatctataatagtgttagcagaaaggttttgaattccgattcttataaagccgaattatctgtcaacagagtcaacctggtcaacgatggtaccgatggatcgaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="+" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="8452" stop="12322"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8752" g_stop="9135" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="384" r_length="384" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9136" i_stop="11734" i_length="2599">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11735" g_stop="12022" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="672" r_length="288" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="+" ref_id="SGN-E344534" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344534" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8752" e_stop="9135"/>
          <exon e_start="11735" e_stop="12022"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCATTCTTTCTCTCTCTAAACCTCAAAAAGTTTCAATTTTTCAGCAAATGGACTCTTCAGATGATGAGGGTGAGGAGTATCTTTTCAAGATTGTAATCATTGGTGATTCTGCAGTAGGTAAATCTAATTTGCTTACACGTTATGCAAGAAATGAGTTTAATTTGCATTCAAAAGCAACTATTGGAGTTGAGTTTCAGACCCAAACTCTTGAAATTGATGGAAAAGAAGTTAAAGCTCAGATTTGGGATACTGCTGGACAAGAAAGGTTTAGAGCTGTGACTTCTGCTTATTATCGTGGTGCTTTTGGTGCTCTTGTTGTTTATGATATTTCAAGAAGGACAACTTTTGATAGTATCCCTCGTTGGCTTGATGAACTCAAAAGTATGTATCTTTTTTGCTAAAAGTTCCATTTTTTAATTTTTATAAGTTGGTTTTGGTTTATGTTGAATTCTTATTTGTCATTCAAAGTTTTCACCTTTTTTGGTGGATTGGCTTGAGTTTAGTCTTTTGAGATTTGATGATGTTATGATGGAATGGTAATTCTTAGATTTGAATTCTACATTCTAGTTTATGTTGCTAAAAAAAATACTCTTTTGTTTAGCTTGGTTTTGGTTTATGTTGAATTCCCATCCAAGTTTTATGCATTGTCTTTGGTTTGTATATAGAAAATTCTCACCTTTTTGGTGGATTGGCTGTAAAGCTTAGTTTTTTTTAGATTTGATGGTGTTAGGATAGAATGGTAATTCTTAGATTTGACTTCTATATTCTTGTTTATGTTGCTAGTAGTCTTTTCTTTGTTTAGCTTGGTTTTGGTTTATGTTGAATTCCCATCAAAGTTGTATGCATATCTTTTGCTTTGTGCAAGAAAAGTTTTCACCTTTTTCAAATATGGTGAGGTTTTGGTGGATTGGCTATAAAGTTCAGTTCTTGAGGTTTTGATTATGCTATGATATAATGGTAATTCTTAGATTTGGCATTTGTTGCTAAAATTCTTCTCTTTTTCTAGACTTGGTTTTGTTTTATGTTCATCTAAGCTTTATGCATTGTCTTTTCTTTGTGCACAGAAAGTTCTCAACTTTTTGGTGGATTGGCTGTAAAGTCTATTTTTTTGAGAATTGACGGTGTTATGATAGAATGCTAGTTCTTTAGATTTGACTTCTACGTTATTCGTTTTGTTTATAATTAGTTATTGGATAAATTGACAAGTGAGTCGAGATCTGATTGTTGTATTCGTATGTCTCTGTTTCTACAAAAAAAATTGAACTTAATTTTGGTTCATGTTGAATTCCCACTTTTCAACTTGGTTTTGGCATATGTTGAGTTCCCATCAAAGTATGATACACATATTTTCTTTTTTTCATAAAAGTTCCTCACCTTTTTGAGATTTATTGAGGTTGGTAGTATAAAGTTCAGTTTTTGAGATTTGATGGTGTTATGACATGATGGCAATTCTGGAATTTGACTTCCACATTCTTGGTTCTTGATTATAACTTATAAGTATGTAAGATATCTTGTAGATCCGAAAAGTCTTGGCTACTTTAACTATTTAGGACGATGGAATATGCCATAAGGGTAATTTTAATCGAGTTTTTCTAGAATTGAATAATGGATGTGTTCAATCTATATTTTTTGAATCTTGTTTTGGTTCCGATAACTTTTCTCTTTAACTGAATAATGTAAGATTTTACAGTTGCTATTAAGTCTAATTCAATCATTTTAGTAAAAAATTACTTACCAGACATAGAAACAAATGGCAATGTTAGCTAGAAAAATCTTGAGTCTTGATTATGTATCATTGTTACTTGAAGCAATGGCAAAGAAAGCGGTATATATGCCAATGTAGCTGTTATGCTCAATTTTGTCTAGATGCAGTTGGGAACCTATGATAAGAACGAATTAGACAGACTGTCAATTGGATGTATATTAGGAATTGGAATTCAAGTCATGCTTTTCTTTCTCCGAAAAGCCAATCCAAATGAACTTCTCAACGGATCATACTTATATGGAATCTGTTTTATTTGCTTGATTGTGAAAATAATTAGGACCAACAACCTGGCTTACCTACGTATGGTATTATGGTAGACTAAGGAGTCTCACGGATTGATAAAAAATCTCAGAGATTCTTTTGATGTTAAATGGTGCCATATTTATAACTTAGGTAGTCTCTCTGTTAAGCCCTTAGCTAACTAAGTTTTGGCTGGACGGGAGTGTATATTTGTTGCTTTGAGCCGTGAGCTGCTATGTGATACTTGCATGACCTTATTTTGTTATTCAAATCTGTTCTTGTCTTGCAAATATCATTTGAATCTTGAAAATGAATGACTTTGTGCTCACTGTTTCCAAAATTGAGAACTTTTAGAACTTAATGTCCATAATATAGATCGAGGAGTATTAACTCTTGATCTATCAGAATGAGTGGATCAGATACAAGGCCGTTTGCCCAAGTTCAAGATGTTAGCTTGAGCCCTGACATGGTCCGAGATCCCTATCTTTAAGGCCATTAAAGAACCCAGGGCCAGGGAAATGTGATAAACAGAATGTTAACATTTGCAGCATATATAACCACAAATGAGGTTTGTACTCCACAAGCTTCATTTAATCACGAGATGAAATGAGCAGAGGATTATGTCATCAAAATCAAAGTCAGTGTTAATAAGGTGCATCATTTTGCTTCCTGGTGTGATGGAGACAATGAAGTAGTTAATAGCGACTTAAGGAAATTCAGATACATACTTTTGAAGGAAATATATGTAGTAATATTAAGTTTTACAGACTCTTTATAGGTGCAGGTGCTGTACTTGAACTTTGCATTCACGAGCTTATTTATCACACTTTGCCTTGGAATGATACTCTCTGCTGTCGGGAATCCCAACTTTTATTTATACCGTTATAGTATTAGGTGTGCAAATTACATGTTATGGTGGTGTTCTATATGTTCTTCATACTCCCAATCATAACTGAAATAACCATTTTCATGCAGCTCATTCGGATACAACGGTTGCAAGGATACTGGTGGGAAACAAATGTGACTTGGAGAATATAAGAGCTGTGAGCGTAGAAGAAGGCAAAAGCCTGGCAGAATCAGAAGGGATGTTCTTCATGGAGACATCTGCCCTCGATTCAACAAACGTGAACAAGGCTTTCGAGATTGTGATTCGAGAGATCTATAATAGTGTTAGCAGAAAGGTTTTGAATTCCGATTCTTATAAAGCCGAATTATCTGTCAACAGAGTCAACCTGGTCAACGATGGTACCGATGGATCGAAAC</genome_strand>
        <mrna_strand>TTTGCATTCTTTCTCTCTCTAAACCTCAAAAAGTTTCAATTTTTCAGCAAATGGACTCTTCAGATGATGAGGGTGAGGAGTATCTTTTCAAGATTGTAATCATTGGTGATTCTGCAGTAGGTAAATCTAATTTGCTTACACGTTATGCAAGAAATGAGTTTAATTTGCATTCAAAAGCAACTATTGGAGTTGAGTTTCAGACCCAAACTCTTGAAATTGATGGAAAAGAAGTTAAAGCTCAGATTTGGGATACTGCTGGACAAGAAAGGTTTAGAGCTGTGACTTCTGCTTATTATCGTGGTGCTTTTGGTGCTCTTGTTGTTTATGATATTTCAAGAAGGACAACTTTTGATAGTATCCCTCGTTGGCTTGATGAACTCAAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCATTCGGATACAACGGTTGCAAGGATACTGGTGGGAAACAAATGTGACTTGGAGAATATAAGAGCTGTGAGCGTAGAAGAAGGCAAAAGCCTGGCAGAATCAGAAGGGATGTTCTTCATGGAGACATCTGCCCTCGATTCAACAAACGTGAACAAGGCTTTCGAGATTGTGATTCGAGAGATCTATAATAGTGTTAGCAGAAAGGTTTTGAATTCCGATTCTTATAAAGCCGAATTATCTGTCAACAGAGTCAACCTGGTCAACGATGGTACCGATGGATCGAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E348365" ref_strand="+" ref_description="SGN-E348365 [cTOF-27-I5]">
      <seq>tttctctctctaaacctcaaaaagtttcaatttttcagcaaatggactcttcagatgatgagggtgaggagtatcttttcaagattgtaatcattggtgattctgcagtaggtaaatctaatttgcttacacgttatgcaagaaatgagtttaatttgcattcaaaagcaactattggagttgagtttcagacccaaactcttgaaattgatggaaaagaagttaaagctcagatttgggatactgctggacaagaaaggtttagagctgtgacttctgcttattatcgtggtgcttttggtgctcttgttgtttatgatatttcaagaaggacaacttttgatagtatccctcgttggcttgatgaactcaaaactcattcggatacaacggttgcaaggatactggtgggaaacaaatgtgacttggagaatataagagctgtgagcgtagaagaaggcaaaagcctggcagaatcagaagggatgttcttcatggagacatctgccctcgattcaacanacgtgaacaaggctttcgagattgtgattcgagagatctataatagtgttagcagaaagggttttgaattccgattcttataaagcccgattatctgtcaacagagtcaacctggtcaacgatggtaccgatggatcgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="+" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="8461" stop="12320"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8761" g_stop="9135" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="375" r_length="375" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9136" i_stop="11734" i_length="2599">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11735" g_stop="12020" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="662" r_length="287" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="+" ref_id="SGN-E348365" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348365" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8761" e_stop="9135"/>
          <exon e_start="11735" e_stop="12020"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCTCTCTAAACCTCAAAAAGTTTCAATTTTTCAGCAAATGGACTCTTCAGATGATGAGGGTGAGGAGTATCTTTTCAAGATTGTAATCATTGGTGATTCTGCAGTAGGTAAATCTAATTTGCTTACACGTTATGCAAGAAATGAGTTTAATTTGCATTCAAAAGCAACTATTGGAGTTGAGTTTCAGACCCAAACTCTTGAAATTGATGGAAAAGAAGTTAAAGCTCAGATTTGGGATACTGCTGGACAAGAAAGGTTTAGAGCTGTGACTTCTGCTTATTATCGTGGTGCTTTTGGTGCTCTTGTTGTTTATGATATTTCAAGAAGGACAACTTTTGATAGTATCCCTCGTTGGCTTGATGAACTCAAAAGTATGTATCTTTTTTGCTAAAAGTTCCATTTTTTAATTTTTATAAGTTGGTTTTGGTTTATGTTGAATTCTTATTTGTCATTCAAAGTTTTCACCTTTTTTGGTGGATTGGCTTGAGTTTAGTCTTTTGAGATTTGATGATGTTATGATGGAATGGTAATTCTTAGATTTGAATTCTACATTCTAGTTTATGTTGCTAAAAAAAATACTCTTTTGTTTAGCTTGGTTTTGGTTTATGTTGAATTCCCATCCAAGTTTTATGCATTGTCTTTGGTTTGTATATAGAAAATTCTCACCTTTTTGGTGGATTGGCTGTAAAGCTTAGTTTTTTTTAGATTTGATGGTGTTAGGATAGAATGGTAATTCTTAGATTTGACTTCTATATTCTTGTTTATGTTGCTAGTAGTCTTTTCTTTGTTTAGCTTGGTTTTGGTTTATGTTGAATTCCCATCAAAGTTGTATGCATATCTTTTGCTTTGTGCAAGAAAAGTTTTCACCTTTTTCAAATATGGTGAGGTTTTGGTGGATTGGCTATAAAGTTCAGTTCTTGAGGTTTTGATTATGCTATGATATAATGGTAATTCTTAGATTTGGCATTTGTTGCTAAAATTCTTCTCTTTTTCTAGACTTGGTTTTGTTTTATGTTCATCTAAGCTTTATGCATTGTCTTTTCTTTGTGCACAGAAAGTTCTCAACTTTTTGGTGGATTGGCTGTAAAGTCTATTTTTTTGAGAATTGACGGTGTTATGATAGAATGCTAGTTCTTTAGATTTGACTTCTACGTTATTCGTTTTGTTTATAATTAGTTATTGGATAAATTGACAAGTGAGTCGAGATCTGATTGTTGTATTCGTATGTCTCTGTTTCTACAAAAAAAATTGAACTTAATTTTGGTTCATGTTGAATTCCCACTTTTCAACTTGGTTTTGGCATATGTTGAGTTCCCATCAAAGTATGATACACATATTTTCTTTTTTTCATAAAAGTTCCTCACCTTTTTGAGATTTATTGAGGTTGGTAGTATAAAGTTCAGTTTTTGAGATTTGATGGTGTTATGACATGATGGCAATTCTGGAATTTGACTTCCACATTCTTGGTTCTTGATTATAACTTATAAGTATGTAAGATATCTTGTAGATCCGAAAAGTCTTGGCTACTTTAACTATTTAGGACGATGGAATATGCCATAAGGGTAATTTTAATCGAGTTTTTCTAGAATTGAATAATGGATGTGTTCAATCTATATTTTTTGAATCTTGTTTTGGTTCCGATAACTTTTCTCTTTAACTGAATAATGTAAGATTTTACAGTTGCTATTAAGTCTAATTCAATCATTTTAGTAAAAAATTACTTACCAGACATAGAAACAAATGGCAATGTTAGCTAGAAAAATCTTGAGTCTTGATTATGTATCATTGTTACTTGAAGCAATGGCAAAGAAAGCGGTATATATGCCAATGTAGCTGTTATGCTCAATTTTGTCTAGATGCAGTTGGGAACCTATGATAAGAACGAATTAGACAGACTGTCAATTGGATGTATATTAGGAATTGGAATTCAAGTCATGCTTTTCTTTCTCCGAAAAGCCAATCCAAATGAACTTCTCAACGGATCATACTTATATGGAATCTGTTTTATTTGCTTGATTGTGAAAATAATTAGGACCAACAACCTGGCTTACCTACGTATGGTATTATGGTAGACTAAGGAGTCTCACGGATTGATAAAAAATCTCAGAGATTCTTTTGATGTTAAATGGTGCCATATTTATAACTTAGGTAGTCTCTCTGTTAAGCCCTTAGCTAACTAAGTTTTGGCTGGACGGGAGTGTATATTTGTTGCTTTGAGCCGTGAGCTGCTATGTGATACTTGCATGACCTTATTTTGTTATTCAAATCTGTTCTTGTCTTGCAAATATCATTTGAATCTTGAAAATGAATGACTTTGTGCTCACTGTTTCCAAAATTGAGAACTTTTAGAACTTAATGTCCATAATATAGATCGAGGAGTATTAACTCTTGATCTATCAGAATGAGTGGATCAGATACAAGGCCGTTTGCCCAAGTTCAAGATGTTAGCTTGAGCCCTGACATGGTCCGAGATCCCTATCTTTAAGGCCATTAAAGAACCCAGGGCCAGGGAAATGTGATAAACAGAATGTTAACATTTGCAGCATATATAACCACAAATGAGGTTTGTACTCCACAAGCTTCATTTAATCACGAGATGAAATGAGCAGAGGATTATGTCATCAAAATCAAAGTCAGTGTTAATAAGGTGCATCATTTTGCTTCCTGGTGTGATGGAGACAATGAAGTAGTTAATAGCGACTTAAGGAAATTCAGATACATACTTTTGAAGGAAATATATGTAGTAATATTAAGTTTTACAGACTCTTTATAGGTGCAGGTGCTGTACTTGAACTTTGCATTCACGAGCTTATTTATCACACTTTGCCTTGGAATGATACTCTCTGCTGTCGGGAATCCCAACTTTTATTTATACCGTTATAGTATTAGGTGTGCAAATTACATGTTATGGTGGTGTTCTATATGTTCTTCATACTCCCAATCATAACTGAAATAACCATTTTCATGCAGCTCATTCGGATACAACGGTTGCAAGGATACTGGTGGGAAACAAATGTGACTTGGAGAATATAAGAGCTGTGAGCGTAGAAGAAGGCAAAAGCCTGGCAGAATCAGAAGGGATGTTCTTCATGGAGACATCTGCCCTCGATTCAACAAACGTGAACAAGGCTTTCGAGATTGTGATTCGAGAGATCTATAATAGTGTTAGCAGAAAGG-TTTTGAATTCCGATTCTTATAAAGCCGAATTATCTGTCAACAGAGTCAACCTGGTCAACGATGGTACCGATGGATCGAA</genome_strand>
        <mrna_strand>TTTCTCTCTCTAAACCTCAAAAAGTTTCAATTTTTCAGCAAATGGACTCTTCAGATGATGAGGGTGAGGAGTATCTTTTCAAGATTGTAATCATTGGTGATTCTGCAGTAGGTAAATCTAATTTGCTTACACGTTATGCAAGAAATGAGTTTAATTTGCATTCAAAAGCAACTATTGGAGTTGAGTTTCAGACCCAAACTCTTGAAATTGATGGAAAAGAAGTTAAAGCTCAGATTTGGGATACTGCTGGACAAGAAAGGTTTAGAGCTGTGACTTCTGCTTATTATCGTGGTGCTTTTGGTGCTCTTGTTGTTTATGATATTTCAAGAAGGACAACTTTTGATAGTATCCCTCGTTGGCTTGATGAACTCAAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCATTCGGATACAACGGTTGCAAGGATACTGGTGGGAAACAAATGTGACTTGGAGAATATAAGAGCTGTGAGCGTAGAAGAAGGCAAAAGCCTGGCAGAATCAGAAGGGATGTTCTTCATGGAGACATCTGCCCTCGATTCAACANACGTGAACAAGGCTTTCGAGATTGTGATTCGAGAGATCTATAATAGTGTTAGCAGAAAGGGTTTTGAATTCCGATTCTTATAAAGCCCGATTATCTGTCAACAGAGTCAACCTGGTCAACGATGGTACCGATGGATCGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E311658" ref_strand="+" ref_description="SGN-E311658 [cLEZ-9-F17]">
      <seq>tttctctctctaaacctcaaaaagtttcaatttttcagcaaatggactcttcagatgatgagggtgaggagtatcttttcaagattgtaatcattggtgattctgcagtaggtaaatctaatttgcttacacgttatgcaagaaatgagtttaatttgcattcaaaagcaactattggagttgagtttcagacccaaactcttgaaattgatggaaaagaagttaaagctcagatttgggatactgctggacaagaaaggtttagagctgtgacttctgcttattatcgtggtgcttttggtgctcttgttgtttatgatatttcaagaaggacaacttttgatagtatccctcgttggcttgatgaactcaaaactcattcggatacaacggttgcaaggatactggtgggaaacaaatgtgacttggagaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="+" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="8461" stop="12094"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8761" g_stop="9135" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="375" r_length="375" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9136" i_stop="11734" i_length="2599">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11735" g_stop="11794" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="435" r_length="60" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="+" ref_id="SGN-E311658" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311658" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8761" e_stop="9135"/>
          <exon e_start="11735" e_stop="11794"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCTCTCTAAACCTCAAAAAGTTTCAATTTTTCAGCAAATGGACTCTTCAGATGATGAGGGTGAGGAGTATCTTTTCAAGATTGTAATCATTGGTGATTCTGCAGTAGGTAAATCTAATTTGCTTACACGTTATGCAAGAAATGAGTTTAATTTGCATTCAAAAGCAACTATTGGAGTTGAGTTTCAGACCCAAACTCTTGAAATTGATGGAAAAGAAGTTAAAGCTCAGATTTGGGATACTGCTGGACAAGAAAGGTTTAGAGCTGTGACTTCTGCTTATTATCGTGGTGCTTTTGGTGCTCTTGTTGTTTATGATATTTCAAGAAGGACAACTTTTGATAGTATCCCTCGTTGGCTTGATGAACTCAAAAGTATGTATCTTTTTTGCTAAAAGTTCCATTTTTTAATTTTTATAAGTTGGTTTTGGTTTATGTTGAATTCTTATTTGTCATTCAAAGTTTTCACCTTTTTTGGTGGATTGGCTTGAGTTTAGTCTTTTGAGATTTGATGATGTTATGATGGAATGGTAATTCTTAGATTTGAATTCTACATTCTAGTTTATGTTGCTAAAAAAAATACTCTTTTGTTTAGCTTGGTTTTGGTTTATGTTGAATTCCCATCCAAGTTTTATGCATTGTCTTTGGTTTGTATATAGAAAATTCTCACCTTTTTGGTGGATTGGCTGTAAAGCTTAGTTTTTTTTAGATTTGATGGTGTTAGGATAGAATGGTAATTCTTAGATTTGACTTCTATATTCTTGTTTATGTTGCTAGTAGTCTTTTCTTTGTTTAGCTTGGTTTTGGTTTATGTTGAATTCCCATCAAAGTTGTATGCATATCTTTTGCTTTGTGCAAGAAAAGTTTTCACCTTTTTCAAATATGGTGAGGTTTTGGTGGATTGGCTATAAAGTTCAGTTCTTGAGGTTTTGATTATGCTATGATATAATGGTAATTCTTAGATTTGGCATTTGTTGCTAAAATTCTTCTCTTTTTCTAGACTTGGTTTTGTTTTATGTTCATCTAAGCTTTATGCATTGTCTTTTCTTTGTGCACAGAAAGTTCTCAACTTTTTGGTGGATTGGCTGTAAAGTCTATTTTTTTGAGAATTGACGGTGTTATGATAGAATGCTAGTTCTTTAGATTTGACTTCTACGTTATTCGTTTTGTTTATAATTAGTTATTGGATAAATTGACAAGTGAGTCGAGATCTGATTGTTGTATTCGTATGTCTCTGTTTCTACAAAAAAAATTGAACTTAATTTTGGTTCATGTTGAATTCCCACTTTTCAACTTGGTTTTGGCATATGTTGAGTTCCCATCAAAGTATGATACACATATTTTCTTTTTTTCATAAAAGTTCCTCACCTTTTTGAGATTTATTGAGGTTGGTAGTATAAAGTTCAGTTTTTGAGATTTGATGGTGTTATGACATGATGGCAATTCTGGAATTTGACTTCCACATTCTTGGTTCTTGATTATAACTTATAAGTATGTAAGATATCTTGTAGATCCGAAAAGTCTTGGCTACTTTAACTATTTAGGACGATGGAATATGCCATAAGGGTAATTTTAATCGAGTTTTTCTAGAATTGAATAATGGATGTGTTCAATCTATATTTTTTGAATCTTGTTTTGGTTCCGATAACTTTTCTCTTTAACTGAATAATGTAAGATTTTACAGTTGCTATTAAGTCTAATTCAATCATTTTAGTAAAAAATTACTTACCAGACATAGAAACAAATGGCAATGTTAGCTAGAAAAATCTTGAGTCTTGATTATGTATCATTGTTACTTGAAGCAATGGCAAAGAAAGCGGTATATATGCCAATGTAGCTGTTATGCTCAATTTTGTCTAGATGCAGTTGGGAACCTATGATAAGAACGAATTAGACAGACTGTCAATTGGATGTATATTAGGAATTGGAATTCAAGTCATGCTTTTCTTTCTCCGAAAAGCCAATCCAAATGAACTTCTCAACGGATCATACTTATATGGAATCTGTTTTATTTGCTTGATTGTGAAAATAATTAGGACCAACAACCTGGCTTACCTACGTATGGTATTATGGTAGACTAAGGAGTCTCACGGATTGATAAAAAATCTCAGAGATTCTTTTGATGTTAAATGGTGCCATATTTATAACTTAGGTAGTCTCTCTGTTAAGCCCTTAGCTAACTAAGTTTTGGCTGGACGGGAGTGTATATTTGTTGCTTTGAGCCGTGAGCTGCTATGTGATACTTGCATGACCTTATTTTGTTATTCAAATCTGTTCTTGTCTTGCAAATATCATTTGAATCTTGAAAATGAATGACTTTGTGCTCACTGTTTCCAAAATTGAGAACTTTTAGAACTTAATGTCCATAATATAGATCGAGGAGTATTAACTCTTGATCTATCAGAATGAGTGGATCAGATACAAGGCCGTTTGCCCAAGTTCAAGATGTTAGCTTGAGCCCTGACATGGTCCGAGATCCCTATCTTTAAGGCCATTAAAGAACCCAGGGCCAGGGAAATGTGATAAACAGAATGTTAACATTTGCAGCATATATAACCACAAATGAGGTTTGTACTCCACAAGCTTCATTTAATCACGAGATGAAATGAGCAGAGGATTATGTCATCAAAATCAAAGTCAGTGTTAATAAGGTGCATCATTTTGCTTCCTGGTGTGATGGAGACAATGAAGTAGTTAATAGCGACTTAAGGAAATTCAGATACATACTTTTGAAGGAAATATATGTAGTAATATTAAGTTTTACAGACTCTTTATAGGTGCAGGTGCTGTACTTGAACTTTGCATTCACGAGCTTATTTATCACACTTTGCCTTGGAATGATACTCTCTGCTGTCGGGAATCCCAACTTTTATTTATACCGTTATAGTATTAGGTGTGCAAATTACATGTTATGGTGGTGTTCTATATGTTCTTCATACTCCCAATCATAACTGAAATAACCATTTTCATGCAGCTCATTCGGATACAACGGTTGCAAGGATACTGGTGGGAAACAAATGTGACTTGGAGAATA</genome_strand>
        <mrna_strand>TTTCTCTCTCTAAACCTCAAAAAGTTTCAATTTTTCAGCAAATGGACTCTTCAGATGATGAGGGTGAGGAGTATCTTTTCAAGATTGTAATCATTGGTGATTCTGCAGTAGGTAAATCTAATTTGCTTACACGTTATGCAAGAAATGAGTTTAATTTGCATTCAAAAGCAACTATTGGAGTTGAGTTTCAGACCCAAACTCTTGAAATTGATGGAAAAGAAGTTAAAGCTCAGATTTGGGATACTGCTGGACAAGAAAGGTTTAGAGCTGTGACTTCTGCTTATTATCGTGGTGCTTTTGGTGCTCTTGTTGTTTATGATATTTCAAGAAGGACAACTTTTGATAGTATCCCTCGTTGGCTTGATGAACTCAAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCATTCGGATACAACGGTTGCAAGGATACTGGTGGGAAACAAATGTGACTTGGAGAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E715395" ref_strand="+" ref_description="SGN-E715395 [FB14AF06]">
      <seq>tctctctaaacctcaaaaagtttcaatttttcagcaaatggactcttcagatgatgagggtgaggagtatcttttcaagattgtaatcattggtgattctgcagtaggtaaatctaatttgcttacacgttatgcaagaaatgagtttaatttgcattcaaaagcaactattggagttgagtttcagacccaaactcttgaaattgatggaaaagaagttaaagctcagatttgggatactgctggacaagaaaggtttagagctgtgacttctgcttattatcgtggtgcttttggtgctcttgttgtttatgatatttcaagaaggacaacttttgatagtatccctcgttggcttgatgaactcaaaactcattcggatacaacggttgcaaggatactggtgggaaacaaatgtgacttggagaatataagagctgtgagcgtagaagaaggcaaaagcctggcagaatcagaagggatgttcttcatggagacatctgccctcgattcaacaaacgtgaacaaggctttcgagattgtgattcgagagatctataatagtgttagcagaaaggttttgaattccgattcttataaagccgaattatctgtcaacagagtcaacctggtcaacgatggtaccgatggatcgaaacaaaagcagggctactcttgttgttctaggtgattaatgttatgtttcttgattccccttaagttttacaagaatggttcattaaattatttttgctggtcatactgtttattgatttgttaatggataaagtacttttgtaatggtcaggaacttaatatttatattctatatggcagctgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="+" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="8465" stop="12505"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8765" g_stop="9135" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="371" r_length="371" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9136" i_stop="11734" i_length="2599">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11735" g_stop="12205" g_length="471"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="842" r_length="471" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="+" ref_id="SGN-E715395" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>842</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715395" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8765" e_stop="9135"/>
          <exon e_start="11735" e_stop="12205"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCTAAACCTCAAAAAGTTTCAATTTTTCAGCAAATGGACTCTTCAGATGATGAGGGTGAGGAGTATCTTTTCAAGATTGTAATCATTGGTGATTCTGCAGTAGGTAAATCTAATTTGCTTACACGTTATGCAAGAAATGAGTTTAATTTGCATTCAAAAGCAACTATTGGAGTTGAGTTTCAGACCCAAACTCTTGAAATTGATGGAAAAGAAGTTAAAGCTCAGATTTGGGATACTGCTGGACAAGAAAGGTTTAGAGCTGTGACTTCTGCTTATTATCGTGGTGCTTTTGGTGCTCTTGTTGTTTATGATATTTCAAGAAGGACAACTTTTGATAGTATCCCTCGTTGGCTTGATGAACTCAAAAGTATGTATCTTTTTTGCTAAAAGTTCCATTTTTTAATTTTTATAAGTTGGTTTTGGTTTATGTTGAATTCTTATTTGTCATTCAAAGTTTTCACCTTTTTTGGTGGATTGGCTTGAGTTTAGTCTTTTGAGATTTGATGATGTTATGATGGAATGGTAATTCTTAGATTTGAATTCTACATTCTAGTTTATGTTGCTAAAAAAAATACTCTTTTGTTTAGCTTGGTTTTGGTTTATGTTGAATTCCCATCCAAGTTTTATGCATTGTCTTTGGTTTGTATATAGAAAATTCTCACCTTTTTGGTGGATTGGCTGTAAAGCTTAGTTTTTTTTAGATTTGATGGTGTTAGGATAGAATGGTAATTCTTAGATTTGACTTCTATATTCTTGTTTATGTTGCTAGTAGTCTTTTCTTTGTTTAGCTTGGTTTTGGTTTATGTTGAATTCCCATCAAAGTTGTATGCATATCTTTTGCTTTGTGCAAGAAAAGTTTTCACCTTTTTCAAATATGGTGAGGTTTTGGTGGATTGGCTATAAAGTTCAGTTCTTGAGGTTTTGATTATGCTATGATATAATGGTAATTCTTAGATTTGGCATTTGTTGCTAAAATTCTTCTCTTTTTCTAGACTTGGTTTTGTTTTATGTTCATCTAAGCTTTATGCATTGTCTTTTCTTTGTGCACAGAAAGTTCTCAACTTTTTGGTGGATTGGCTGTAAAGTCTATTTTTTTGAGAATTGACGGTGTTATGATAGAATGCTAGTTCTTTAGATTTGACTTCTACGTTATTCGTTTTGTTTATAATTAGTTATTGGATAAATTGACAAGTGAGTCGAGATCTGATTGTTGTATTCGTATGTCTCTGTTTCTACAAAAAAAATTGAACTTAATTTTGGTTCATGTTGAATTCCCACTTTTCAACTTGGTTTTGGCATATGTTGAGTTCCCATCAAAGTATGATACACATATTTTCTTTTTTTCATAAAAGTTCCTCACCTTTTTGAGATTTATTGAGGTTGGTAGTATAAAGTTCAGTTTTTGAGATTTGATGGTGTTATGACATGATGGCAATTCTGGAATTTGACTTCCACATTCTTGGTTCTTGATTATAACTTATAAGTATGTAAGATATCTTGTAGATCCGAAAAGTCTTGGCTACTTTAACTATTTAGGACGATGGAATATGCCATAAGGGTAATTTTAATCGAGTTTTTCTAGAATTGAATAATGGATGTGTTCAATCTATATTTTTTGAATCTTGTTTTGGTTCCGATAACTTTTCTCTTTAACTGAATAATGTAAGATTTTACAGTTGCTATTAAGTCTAATTCAATCATTTTAGTAAAAAATTACTTACCAGACATAGAAACAAATGGCAATGTTAGCTAGAAAAATCTTGAGTCTTGATTATGTATCATTGTTACTTGAAGCAATGGCAAAGAAAGCGGTATATATGCCAATGTAGCTGTTATGCTCAATTTTGTCTAGATGCAGTTGGGAACCTATGATAAGAACGAATTAGACAGACTGTCAATTGGATGTATATTAGGAATTGGAATTCAAGTCATGCTTTTCTTTCTCCGAAAAGCCAATCCAAATGAACTTCTCAACGGATCATACTTATATGGAATCTGTTTTATTTGCTTGATTGTGAAAATAATTAGGACCAACAACCTGGCTTACCTACGTATGGTATTATGGTAGACTAAGGAGTCTCACGGATTGATAAAAAATCTCAGAGATTCTTTTGATGTTAAATGGTGCCATATTTATAACTTAGGTAGTCTCTCTGTTAAGCCCTTAGCTAACTAAGTTTTGGCTGGACGGGAGTGTATATTTGTTGCTTTGAGCCGTGAGCTGCTATGTGATACTTGCATGACCTTATTTTGTTATTCAAATCTGTTCTTGTCTTGCAAATATCATTTGAATCTTGAAAATGAATGACTTTGTGCTCACTGTTTCCAAAATTGAGAACTTTTAGAACTTAATGTCCATAATATAGATCGAGGAGTATTAACTCTTGATCTATCAGAATGAGTGGATCAGATACAAGGCCGTTTGCCCAAGTTCAAGATGTTAGCTTGAGCCCTGACATGGTCCGAGATCCCTATCTTTAAGGCCATTAAAGAACCCAGGGCCAGGGAAATGTGATAAACAGAATGTTAACATTTGCAGCATATATAACCACAAATGAGGTTTGTACTCCACAAGCTTCATTTAATCACGAGATGAAATGAGCAGAGGATTATGTCATCAAAATCAAAGTCAGTGTTAATAAGGTGCATCATTTTGCTTCCTGGTGTGATGGAGACAATGAAGTAGTTAATAGCGACTTAAGGAAATTCAGATACATACTTTTGAAGGAAATATATGTAGTAATATTAAGTTTTACAGACTCTTTATAGGTGCAGGTGCTGTACTTGAACTTTGCATTCACGAGCTTATTTATCACACTTTGCCTTGGAATGATACTCTCTGCTGTCGGGAATCCCAACTTTTATTTATACCGTTATAGTATTAGGTGTGCAAATTACATGTTATGGTGGTGTTCTATATGTTCTTCATACTCCCAATCATAACTGAAATAACCATTTTCATGCAGCTCATTCGGATACAACGGTTGCAAGGATACTGGTGGGAAACAAATGTGACTTGGAGAATATAAGAGCTGTGAGCGTAGAAGAAGGCAAAAGCCTGGCAGAATCAGAAGGGATGTTCTTCATGGAGACATCTGCCCTCGATTCAACAAACGTGAACAAGGCTTTCGAGATTGTGATTCGAGAGATCTATAATAGTGTTAGCAGAAAGGTTTTGAATTCCGATTCTTATAAAGCCGAATTATCTGTCAACAGAGTCAACCTGGTCAACGATGGTACCGATGGATCGAAACAAAAGCAGGGCTACTCTTGTTGTTCTAGGTGATTAATGTTATGTTTCTTGATTCCCCTTAAGTTTTACAAGAATGGTTCATTAAATTATTTTTGCTGGTCATACTGTTTATTGATTTGTTAATGGATAAAGTACTTTTGTAATGGTCAGGAACTTAATATTTATATTCTATATGGCAGCTGAA</genome_strand>
        <mrna_strand>TCTCTCTAAACCTCAAAAAGTTTCAATTTTTCAGCAAATGGACTCTTCAGATGATGAGGGTGAGGAGTATCTTTTCAAGATTGTAATCATTGGTGATTCTGCAGTAGGTAAATCTAATTTGCTTACACGTTATGCAAGAAATGAGTTTAATTTGCATTCAAAAGCAACTATTGGAGTTGAGTTTCAGACCCAAACTCTTGAAATTGATGGAAAAGAAGTTAAAGCTCAGATTTGGGATACTGCTGGACAAGAAAGGTTTAGAGCTGTGACTTCTGCTTATTATCGTGGTGCTTTTGGTGCTCTTGTTGTTTATGATATTTCAAGAAGGACAACTTTTGATAGTATCCCTCGTTGGCTTGATGAACTCAAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCATTCGGATACAACGGTTGCAAGGATACTGGTGGGAAACAAATGTGACTTGGAGAATATAAGAGCTGTGAGCGTAGAAGAAGGCAAAAGCCTGGCAGAATCAGAAGGGATGTTCTTCATGGAGACATCTGCCCTCGATTCAACAAACGTGAACAAGGCTTTCGAGATTGTGATTCGAGAGATCTATAATAGTGTTAGCAGAAAGGTTTTGAATTCCGATTCTTATAAAGCCGAATTATCTGTCAACAGAGTCAACCTGGTCAACGATGGTACCGATGGATCGAAACAAAAGCAGGGCTACTCTTGTTGTTCTAGGTGATTAATGTTATGTTTCTTGATTCCCCTTAAGTTTTACAAGAATGGTTCATTAAATTATTTTTGCTGGTCATACTGTTTATTGATTTGTTAATGGATAAAGTACTTTTGTAATGGTCAGGAACTTAATATTTATATTCTATATGGCAGCTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E612350" ref_strand="-" ref_description="SGN-E612350 [62112]">
      <seq>cagacccaaactcttgaaattgatggaaaacgaagttaaagctcagatttgggatactgctggacaagaaaggtttagacctgtgacttctgcttattatcgtggtgcttttggtgctcttgttgtttatgatatttcaagaaggacaacttttgatagcatccctcgttggcttgatgaactcaaaactcattctgatacaacggttgcaaggatgctcgtgggaaacaaatgtgacttggagaacataagacctgtgagcatagaagaaggcaaaagcctggcagaatcagaagggatgttcttcatggagacatctgcccttgattcaacaaacgtaaacaaggcttttgagattgtgattcgagagatctataatagtgttagcagaaaggttttgaattccgattcttataaagcggaattatctgtcaacagagttaacctggtcaacgatggtaccgatggatcgaaacaaaagcagggctactcttgttgttctaggtgattaatgttatgtttattgattccccttaagttttacaagaatggttcattaaattatttttgttggtcttactgtttattgatttgttaatggatggagtacttttgtaatggtcaggaacttgatatttatattctatatggcagctgaaatgaaaaatgtttcttttcccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaactcgagactag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="+" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="8649" stop="12529"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8949" g_stop="9135" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9136" i_stop="11734" i_length="2599">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11735" g_stop="12228" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="682" r_length="494" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="683" polyA_stop="719"/>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="+" ref_id="SGN-E612350" ref_strand="-">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E612350" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="8949" e_stop="9135"/>
          <exon e_start="11735" e_stop="12228"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGACCCAAACTCTTGAAATTGATGGAAAA-GAAGTTAAAGCTCAGATTTGGGATACTGCTGGACAAGAAAGGTTTAGAGCTGTGACTTCTGCTTATTATCGTGGTGCTTTTGGTGCTCTTGTTGTTTATGATATTTCAAGAAGGACAACTTTTGATAGTATCCCTCGTTGGCTTGATGAACTCAAAAGTATGTATCTTTTTTGCTAAAAGTTCCATTTTTTAATTTTTATAAGTTGGTTTTGGTTTATGTTGAATTCTTATTTGTCATTCAAAGTTTTCACCTTTTTTGGTGGATTGGCTTGAGTTTAGTCTTTTGAGATTTGATGATGTTATGATGGAATGGTAATTCTTAGATTTGAATTCTACATTCTAGTTTATGTTGCTAAAAAAAATACTCTTTTGTTTAGCTTGGTTTTGGTTTATGTTGAATTCCCATCCAAGTTTTATGCATTGTCTTTGGTTTGTATATAGAAAATTCTCACCTTTTTGGTGGATTGGCTGTAAAGCTTAGTTTTTTTTAGATTTGATGGTGTTAGGATAGAATGGTAATTCTTAGATTTGACTTCTATATTCTTGTTTATGTTGCTAGTAGTCTTTTCTTTGTTTAGCTTGGTTTTGGTTTATGTTGAATTCCCATCAAAGTTGTATGCATATCTTTTGCTTTGTGCAAGAAAAGTTTTCACCTTTTTCAAATATGGTGAGGTTTTGGTGGATTGGCTATAAAGTTCAGTTCTTGAGGTTTTGATTATGCTATGATATAATGGTAATTCTTAGATTTGGCATTTGTTGCTAAAATTCTTCTCTTTTTCTAGACTTGGTTTTGTTTTATGTTCATCTAAGCTTTATGCATTGTCTTTTCTTTGTGCACAGAAAGTTCTCAACTTTTTGGTGGATTGGCTGTAAAGTCTATTTTTTTGAGAATTGACGGTGTTATGATAGAATGCTAGTTCTTTAGATTTGACTTCTACGTTATTCGTTTTGTTTATAATTAGTTATTGGATAAATTGACAAGTGAGTCGAGATCTGATTGTTGTATTCGTATGTCTCTGTTTCTACAAAAAAAATTGAACTTAATTTTGGTTCATGTTGAATTCCCACTTTTCAACTTGGTTTTGGCATATGTTGAGTTCCCATCAAAGTATGATACACATATTTTCTTTTTTTCATAAAAGTTCCTCACCTTTTTGAGATTTATTGAGGTTGGTAGTATAAAGTTCAGTTTTTGAGATTTGATGGTGTTATGACATGATGGCAATTCTGGAATTTGACTTCCACATTCTTGGTTCTTGATTATAACTTATAAGTATGTAAGATATCTTGTAGATCCGAAAAGTCTTGGCTACTTTAACTATTTAGGACGATGGAATATGCCATAAGGGTAATTTTAATCGAGTTTTTCTAGAATTGAATAATGGATGTGTTCAATCTATATTTTTTGAATCTTGTTTTGGTTCCGATAACTTTTCTCTTTAACTGAATAATGTAAGATTTTACAGTTGCTATTAAGTCTAATTCAATCATTTTAGTAAAAAATTACTTACCAGACATAGAAACAAATGGCAATGTTAGCTAGAAAAATCTTGAGTCTTGATTATGTATCATTGTTACTTGAAGCAATGGCAAAGAAAGCGGTATATATGCCAATGTAGCTGTTATGCTCAATTTTGTCTAGATGCAGTTGGGAACCTATGATAAGAACGAATTAGACAGACTGTCAATTGGATGTATATTAGGAATTGGAATTCAAGTCATGCTTTTCTTTCTCCGAAAAGCCAATCCAAATGAACTTCTCAACGGATCATACTTATATGGAATCTGTTTTATTTGCTTGATTGTGAAAATAATTAGGACCAACAACCTGGCTTACCTACGTATGGTATTATGGTAGACTAAGGAGTCTCACGGATTGATAAAAAATCTCAGAGATTCTTTTGATGTTAAATGGTGCCATATTTATAACTTAGGTAGTCTCTCTGTTAAGCCCTTAGCTAACTAAGTTTTGGCTGGACGGGAGTGTATATTTGTTGCTTTGAGCCGTGAGCTGCTATGTGATACTTGCATGACCTTATTTTGTTATTCAAATCTGTTCTTGTCTTGCAAATATCATTTGAATCTTGAAAATGAATGACTTTGTGCTCACTGTTTCCAAAATTGAGAACTTTTAGAACTTAATGTCCATAATATAGATCGAGGAGTATTAACTCTTGATCTATCAGAATGAGTGGATCAGATACAAGGCCGTTTGCCCAAGTTCAAGATGTTAGCTTGAGCCCTGACATGGTCCGAGATCCCTATCTTTAAGGCCATTAAAGAACCCAGGGCCAGGGAAATGTGATAAACAGAATGTTAACATTTGCAGCATATATAACCACAAATGAGGTTTGTACTCCACAAGCTTCATTTAATCACGAGATGAAATGAGCAGAGGATTATGTCATCAAAATCAAAGTCAGTGTTAATAAGGTGCATCATTTTGCTTCCTGGTGTGATGGAGACAATGAAGTAGTTAATAGCGACTTAAGGAAATTCAGATACATACTTTTGAAGGAAATATATGTAGTAATATTAAGTTTTACAGACTCTTTATAGGTGCAGGTGCTGTACTTGAACTTTGCATTCACGAGCTTATTTATCACACTTTGCCTTGGAATGATACTCTCTGCTGTCGGGAATCCCAACTTTTATTTATACCGTTATAGTATTAGGTGTGCAAATTACATGTTATGGTGGTGTTCTATATGTTCTTCATACTCCCAATCATAACTGAAATAACCATTTTCATGCAGCTCATTCGGATACAACGGTTGCAAGGATACTGGTGGGAAACAAATGTGACTTGGAGAATATAAGAGCTGTGAGCGTAGAAGAAGGCAAAAGCCTGGCAGAATCAGAAGGGATGTTCTTCATGGAGACATCTGCCCTCGATTCAACAAACGTGAACAAGGCTTTCGAGATTGTGATTCGAGAGATCTATAATAGTGTTAGCAGAAAGGTTTTGAATTCCGATTCTTATAAAGCCGAATTATCTGTCAACAGAGTCAACCTGGTCAACGATGGTACCGATGGATCGAAACAAAAGCAGGGCTACTCTTGTTGTTCTAGGTGATTAATGTTATGTTTCTTGATTCCCCTTAAGTTTTACAAGAATGGTTCATTAAATTATTTTTGCTGGTCATACTGTTTATTGATTTGTTAATGGATAAAGTACTTTTGTAATGGTCAGGAACTTAATATTTATATTCTATATGGCAGCTGAAATGATAAATGTTTATTTTCCCCA</genome_strand>
        <mrna_strand>CAGACCCAAACTCTTGAAATTGATGGAAAACGAAGTTAAAGCTCAGATTTGGGATACTGCTGGACAAGAAAGGTTTAGACCTGTGACTTCTGCTTATTATCGTGGTGCTTTTGGTGCTCTTGTTGTTTATGATATTTCAAGAAGGACAACTTTTGATAGCATCCCTCGTTGGCTTGATGAACTCAAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCATTCTGATACAACGGTTGCAAGGATGCTCGTGGGAAACAAATGTGACTTGGAGAACATAAGACCTGTGAGCATAGAAGAAGGCAAAAGCCTGGCAGAATCAGAAGGGATGTTCTTCATGGAGACATCTGCCCTTGATTCAACAAACGTAAACAAGGCTTTTGAGATTGTGATTCGAGAGATCTATAATAGTGTTAGCAGAAAGGTTTTGAATTCCGATTCTTATAAAGCGGAATTATCTGTCAACAGAGTTAACCTGGTCAACGATGGTACCGATGGATCGAAACAAAAGCAGGGCTACTCTTGTTGTTCTAGGTGATTAATGTTATGTTTATTGATTCCCCTTAAGTTTTACAAGAATGGTTCATTAAATTATTTTTGTTGGTCTTACTGTTTATTGATTTGTTAATGGATGGAGTACTTTTGTAATGGTCAGGAACTTGATATTTATATTCTATATGGCAGCTGAAATGAAAAATGTTTCTTTTCCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E435923" ref_strand="-" ref_description="SGN-E435923 [STM-62-C12]">
      <seq>gaaaagaagttaaagctcagatttgggatactgctggacaagaaaggtttagagctgtgacttctgcttattatcgtggtgcttttggtgctcttgttgtttatgatatttcaaggaggacaacttttgatagcatccctcgttggcttaatgaactcaaaactcattctgatacaacggttgcaaggatgctcgtgggaaacaaatgtgacttggagaacataagagctgtgagcgtagaagaaggcaaaagcctggcagaatcagaagggatgttcttcatggagacatctgccctcgattcaacaaacgtaaacaaggcttttgagattgtgattcgagagatctataatagtgttagcagaaaggttttgaattccgattcttataaagcagaattatctgtcaacagagttaacctggtcaacgatggtaccgatggatcgaaacaaaagcagggctactcttgttgttctaggtgattaatgttatgttttcttgattccccttaagttttacaagaatggttcattaaattatttttgttggtcttactgtttattgatttgttaatggatggagtacttttgtaatggtcaggaacttgatatttatattctatatggcagctgaaatgaaagatgtttattttcccaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="+" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="8674" stop="12529"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8974" g_stop="9135" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9136" i_stop="11734" i_length="2599">
            <donor d_prob="0.993" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11735" g_stop="12235" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="664" r_length="502" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="+" ref_id="SGN-E435923" ref_strand="-">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E435923" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="8974" e_stop="9135"/>
          <exon e_start="11735" e_stop="12235"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAGAAGTTAAAGCTCAGATTTGGGATACTGCTGGACAAGAAAGGTTTAGAGCTGTGACTTCTGCTTATTATCGTGGTGCTTTTGGTGCTCTTGTTGTTTATGATATTTCAAGAAGGACAACTTTTGATAGTATCCCTCGTTGGCTTGATGAACTCAAAAGTATGTATCTTTTTTGCTAAAAGTTCCATTTTTTAATTTTTATAAGTTGGTTTTGGTTTATGTTGAATTCTTATTTGTCATTCAAAGTTTTCACCTTTTTTGGTGGATTGGCTTGAGTTTAGTCTTTTGAGATTTGATGATGTTATGATGGAATGGTAATTCTTAGATTTGAATTCTACATTCTAGTTTATGTTGCTAAAAAAAATACTCTTTTGTTTAGCTTGGTTTTGGTTTATGTTGAATTCCCATCCAAGTTTTATGCATTGTCTTTGGTTTGTATATAGAAAATTCTCACCTTTTTGGTGGATTGGCTGTAAAGCTTAGTTTTTTTTAGATTTGATGGTGTTAGGATAGAATGGTAATTCTTAGATTTGACTTCTATATTCTTGTTTATGTTGCTAGTAGTCTTTTCTTTGTTTAGCTTGGTTTTGGTTTATGTTGAATTCCCATCAAAGTTGTATGCATATCTTTTGCTTTGTGCAAGAAAAGTTTTCACCTTTTTCAAATATGGTGAGGTTTTGGTGGATTGGCTATAAAGTTCAGTTCTTGAGGTTTTGATTATGCTATGATATAATGGTAATTCTTAGATTTGGCATTTGTTGCTAAAATTCTTCTCTTTTTCTAGACTTGGTTTTGTTTTATGTTCATCTAAGCTTTATGCATTGTCTTTTCTTTGTGCACAGAAAGTTCTCAACTTTTTGGTGGATTGGCTGTAAAGTCTATTTTTTTGAGAATTGACGGTGTTATGATAGAATGCTAGTTCTTTAGATTTGACTTCTACGTTATTCGTTTTGTTTATAATTAGTTATTGGATAAATTGACAAGTGAGTCGAGATCTGATTGTTGTATTCGTATGTCTCTGTTTCTACAAAAAAAATTGAACTTAATTTTGGTTCATGTTGAATTCCCACTTTTCAACTTGGTTTTGGCATATGTTGAGTTCCCATCAAAGTATGATACACATATTTTCTTTTTTTCATAAAAGTTCCTCACCTTTTTGAGATTTATTGAGGTTGGTAGTATAAAGTTCAGTTTTTGAGATTTGATGGTGTTATGACATGATGGCAATTCTGGAATTTGACTTCCACATTCTTGGTTCTTGATTATAACTTATAAGTATGTAAGATATCTTGTAGATCCGAAAAGTCTTGGCTACTTTAACTATTTAGGACGATGGAATATGCCATAAGGGTAATTTTAATCGAGTTTTTCTAGAATTGAATAATGGATGTGTTCAATCTATATTTTTTGAATCTTGTTTTGGTTCCGATAACTTTTCTCTTTAACTGAATAATGTAAGATTTTACAGTTGCTATTAAGTCTAATTCAATCATTTTAGTAAAAAATTACTTACCAGACATAGAAACAAATGGCAATGTTAGCTAGAAAAATCTTGAGTCTTGATTATGTATCATTGTTACTTGAAGCAATGGCAAAGAAAGCGGTATATATGCCAATGTAGCTGTTATGCTCAATTTTGTCTAGATGCAGTTGGGAACCTATGATAAGAACGAATTAGACAGACTGTCAATTGGATGTATATTAGGAATTGGAATTCAAGTCATGCTTTTCTTTCTCCGAAAAGCCAATCCAAATGAACTTCTCAACGGATCATACTTATATGGAATCTGTTTTATTTGCTTGATTGTGAAAATAATTAGGACCAACAACCTGGCTTACCTACGTATGGTATTATGGTAGACTAAGGAGTCTCACGGATTGATAAAAAATCTCAGAGATTCTTTTGATGTTAAATGGTGCCATATTTATAACTTAGGTAGTCTCTCTGTTAAGCCCTTAGCTAACTAAGTTTTGGCTGGACGGGAGTGTATATTTGTTGCTTTGAGCCGTGAGCTGCTATGTGATACTTGCATGACCTTATTTTGTTATTCAAATCTGTTCTTGTCTTGCAAATATCATTTGAATCTTGAAAATGAATGACTTTGTGCTCACTGTTTCCAAAATTGAGAACTTTTAGAACTTAATGTCCATAATATAGATCGAGGAGTATTAACTCTTGATCTATCAGAATGAGTGGATCAGATACAAGGCCGTTTGCCCAAGTTCAAGATGTTAGCTTGAGCCCTGACATGGTCCGAGATCCCTATCTTTAAGGCCATTAAAGAACCCAGGGCCAGGGAAATGTGATAAACAGAATGTTAACATTTGCAGCATATATAACCACAAATGAGGTTTGTACTCCACAAGCTTCATTTAATCACGAGATGAAATGAGCAGAGGATTATGTCATCAAAATCAAAGTCAGTGTTAATAAGGTGCATCATTTTGCTTCCTGGTGTGATGGAGACAATGAAGTAGTTAATAGCGACTTAAGGAAATTCAGATACATACTTTTGAAGGAAATATATGTAGTAATATTAAGTTTTACAGACTCTTTATAGGTGCAGGTGCTGTACTTGAACTTTGCATTCACGAGCTTATTTATCACACTTTGCCTTGGAATGATACTCTCTGCTGTCGGGAATCCCAACTTTTATTTATACCGTTATAGTATTAGGTGTGCAAATTACATGTTATGGTGGTGTTCTATATGTTCTTCATACTCCCAATCATAACTGAAATAACCATTTTCATGCAGCTCATTCGGATACAACGGTTGCAAGGATACTGGTGGGAAACAAATGTGACTTGGAGAATATAAGAGCTGTGAGCGTAGAAGAAGGCAAAAGCCTGGCAGAATCAGAAGGGATGTTCTTCATGGAGACATCTGCCCTCGATTCAACAAACGTGAACAAGGCTTTCGAGATTGTGATTCGAGAGATCTATAATAGTGTTAGCAGAAAGGTTTTGAATTCCGATTCTTATAAAGCCGAATTATCTGTCAACAGAGTCAACCTGGTCAACGATGGTACCGATGGATCGAAACAAAAGCAGGGCTACTCTTGTTGTTCTAGGTGATTAATGTTATG-TTTCTTGATTCCCCTTAAGTTTTACAAGAATGGTTCATTAAATTATTTTTGCTGGTCATACTGTTTATTGATTTGTTAATGGATAAAGTACTTTTGTAATGGTCAGGAACTTAATATTTATATTCTATATGGCAGCTGAAATGATAAATGTTTATTTTCCCCAATGCAAA</genome_strand>
        <mrna_strand>GAAAAGAAGTTAAAGCTCAGATTTGGGATACTGCTGGACAAGAAAGGTTTAGAGCTGTGACTTCTGCTTATTATCGTGGTGCTTTTGGTGCTCTTGTTGTTTATGATATTTCAAGGAGGACAACTTTTGATAGCATCCCTCGTTGGCTTAATGAACTCAAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCATTCTGATACAACGGTTGCAAGGATGCTCGTGGGAAACAAATGTGACTTGGAGAACATAAGAGCTGTGAGCGTAGAAGAAGGCAAAAGCCTGGCAGAATCAGAAGGGATGTTCTTCATGGAGACATCTGCCCTCGATTCAACAAACGTAAACAAGGCTTTTGAGATTGTGATTCGAGAGATCTATAATAGTGTTAGCAGAAAGGTTTTGAATTCCGATTCTTATAAAGCAGAATTATCTGTCAACAGAGTTAACCTGGTCAACGATGGTACCGATGGATCGAAACAAAAGCAGGGCTACTCTTGTTGTTCTAGGTGATTAATGTTATGTTTTCTTGATTCCCCTTAAGTTTTACAAGAATGGTTCATTAAATTATTTTTGTTGGTCTTACTGTTTATTGATTTGTTAATGGATGGAGTACTTTTGTAATGGTCAGGAACTTGATATTTATATTCTATATGGCAGCTGAAATGAAAGATGTTTATTTTCCCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E571953" ref_strand="+" ref_description="SGN-E571953 [31031]">
      <seq>atgctattaaaccccacactgaaaataagaataaataacaataacctaaacaattttcaaatgataaatcaagataaagttgaccattatttctttactagggatatatttatgaaaagaaaaaaaaaacataaaaaaggtgcattttgaggctaatagtctatgttgctcgtactctcctaaaatgttgctacaccaacgttgaatcctccaaaaaatacactacttttgaaggatccaacacacacctatctgcatttttaaagattctgaccaacatagcttgtattattgtttcagctccatttcttcagtgtcctgatctccagtatctagcattctcaaaaccattcttgcaatattgataatcctcaaatgtttgatcaatttcatcttgagagttcatcacaaaaggaccatgttgaaccacaggttcattaagaggttgtccacctaaaagaacaaatcttaatggctttgaagacttgttccatacactaagtccctctccagggcctaaaaccaagcaatggtgagctgacacaggacctgaattcggaattccgaaggctccttctccttcaactatatacacgaacgcgttccaagactcggggatggcttgatgatagtaagctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="+" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="13008" stop="14250"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13308" g_stop="13950" g_length="643"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="640" r_length="640" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="+" ref_id="SGN-E571953" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E571953" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13308" e_stop="13950"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCTATTAAATCCCACATTGAAAATAAGAATAAATAACAATAACCTAAACAATTTTCAAATGATAAATCAAGATAAACTTAGCCATTATTTCTTTACCAGGGATATATTTACGAAACGAAAAAAGAAACATAAAAAAGGTGCATTTTGAGGCTAATAGTCTATGTTGCTCGTACTCTCGTAAAATGTTGCCACACCAACGTCGAATCCTCCAAAAGAAATACACTACTTTTGAAGAATTCAACACACACCTGTCGGCAGTTTTTAAAGACTCCGACCAACATAACTTGTATTATTGTTTCAGTTCCATTTCTTCAGTGCCCTGATCTCCAGTATCTAGCATTCTCAAAACCATTCTTGCAATATTGATAATCTTCAAATGTTTGATCAATTTCATCTTGTGAGTTCATCACAAAAGGACCATGTTGAACCACAGGTTCATTAAGAGGTTGTCCACCTAAAAGAACAAATCTTAATGGCTTTGAAGACTTGTTCCATACACTAAGTCCCTCTCCAGGGCCTAAAACCAAGCAATGGTGAGCTGATACAGGACCTGAACTCGGAATTCCGAAGACACCTTCTCCTTCAACTATATATACGAAGGCGTTCCAAGATTCAGGGATGGCTTGATGATAGTAAGCTGT</genome_strand>
        <mrna_strand>ATGCTATTAAACCCCACACTGAAAATAAGAATAAATAACAATAACCTAAACAATTTTCAAATGATAAATCAAGATAAAGTTGACCATTATTTCTTTACTAGGGATATATTTATGAAAAGAAAAAAAAAACATAAAAAAGGTGCATTTTGAGGCTAATAGTCTATGTTGCTCGTACTCTCCTAAAATGTTGCTACACCAACGTTGAATCCTCC-AAA-AAATACACTACTTTTGAAGGATCCAACACACACCTATCTGCA-TTTTTAAAGATTCTGACCAACATAGCTTGTATTATTGTTTCAGCTCCATTTCTTCAGTGTCCTGATCTCCAGTATCTAGCATTCTCAAAACCATTCTTGCAATATTGATAATCCTCAAATGTTTGATCAATTTCATCTTGAGAGTTCATCACAAAAGGACCATGTTGAACCACAGGTTCATTAAGAGGTTGTCCACCTAAAAGAACAAATCTTAATGGCTTTGAAGACTTGTTCCATACACTAAGTCCCTCTCCAGGGCCTAAAACCAAGCAATGGTGAGCTGACACAGGACCTGAATTCGGAATTCCGAAGGCTCCTTCTCCTTCAACTATATACACGAACGCGTTCCAAGACTCGGGGATGGCTTGATGATAGTAAGCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E423686" ref_strand="+" ref_description="SGN-E423686 [STM-42-M8]">
      <seq>aaacttagccattatttctttactagggatatatttatgaaaagaaaaaaataaacataaaaaaggtgcattttgaggctaatagtctatgttgctcgtactctcctaaaatgttgccacaccaatgtcgaatcctccaaaaaatacactacttttgaaggatccggcacacacacctatatgcacttttaaagattccgaccaacatagcttgtattattgtttcagctccatttcttcagtgccctgatctccagtatctagcattctcaaaaccattcttgcaatattgataatcctcaaatgtttgatcaatttcatcttgtgagttcatcacaaatggaccatgttgaaccacaggttcattaagaggttgtccacctaaaagaacaaatcttaatggctttgaagacttgttccacacactaagtccctctccagggcctaaaaccaagcaatggtgagctgatacaggacctgaattcggaattccgaaaactccttctccttcaactatatacacaaacgcattccaagactcggggatggcttgatgatagtaagctgttggttgtagggtgaaatcgaggtacattgtaggcgttcgtgtgtaaaccggggattggacttccatcgctgcacctgctataactttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="+" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="13083" stop="14339"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13383" g_stop="14039" g_length="657"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="657" r_length="657" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="+" ref_id="SGN-E423686" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E423686" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13383" e_stop="14039"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTAGCCATTATTTCTTTACCAGGGATATATTTACGAAACG-AAAAAAGAAACATAAAAAAGGTGCATTTTGAGGCTAATAGTCTATGTTGCTCGTACTCTCGTAAAATGTTGCCACACCAACGTCGAATCCTCCAAAAGAAATACACTACTTTTGAAGAATTC--AACACACACCTGTCGGCAGTTTTTAAAGACTCCGACCAACATAACTTGTATTATTGTTTCAGTTCCATTTCTTCAGTGCCCTGATCTCCAGTATCTAGCATTCTCAAAACCATTCTTGCAATATTGATAATCTTCAAATGTTTGATCAATTTCATCTTGTGAGTTCATCACAAAAGGACCATGTTGAACCACAGGTTCATTAAGAGGTTGTCCACCTAAAAGAACAAATCTTAATGGCTTTGAAGACTTGTTCCATACACTAAGTCCCTCTCCAGGGCCTAAAACCAAGCAATGGTGAGCTGATACAGGACCTGAACTCGGAATTCCGAAGACACCTTCTCCTTCAACTATATATACGAAGGCGTTCCAAGATTCAGGGATGGCTTGATGATAGTAAGCTGTTGGTTGTAGGGTGAAATCGAGGTACATTGTAGGCGTTTGTGTGTAAACCGGGGATTGGACTCCCATTGCTTCACCTGCTATAACTTTTA</genome_strand>
        <mrna_strand>AAACTTAGCCATTATTTCTTTACTAGGGATATATTTATGAAAAGAAAAAAATAAACATAAAAAAGGTGCATTTTGAGGCTAATAGTCTATGTTGCTCGTACTCTCCTAAAATGTTGCCACACCAATGTCGAATCCTCC-AAA-AAATACACTACTTTTGAAGGATCCGGCACACACACCTATATGCA-CTTTTAAAGATTCCGACCAACATAGCTTGTATTATTGTTTCAGCTCCATTTCTTCAGTGCCCTGATCTCCAGTATCTAGCATTCTCAAAACCATTCTTGCAATATTGATAATCCTCAAATGTTTGATCAATTTCATCTTGTGAGTTCATCACAAATGGACCATGTTGAACCACAGGTTCATTAAGAGGTTGTCCACCTAAAAGAACAAATCTTAATGGCTTTGAAGACTTGTTCCACACACTAAGTCCCTCTCCAGGGCCTAAAACCAAGCAATGGTGAGCTGATACAGGACCTGAATTCGGAATTCCGAAAACTCCTTCTCCTTCAACTATATACACAAACGCATTCCAAGACTCGGGGATGGCTTGATGATAGTAAGCTGTTGGTTGTAGGGTGAAATCGAGGTACATTGTAGGCGTTCGTGTGTAAACCGGGGATTGGACTTCCATCGCTGCACCTGCTATAACTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E451029" ref_strand="+" ref_description="SGN-E451029 [cSTS-11-C24]">
      <seq>ctttcctcatgttggatgaattttcagtttctgctcctgctggttttcctgatcatccacacagaggttttgagacagtaacttacatgctacagggagcttttactcatcaagattttgctggtcacaagggcacaatcaatactggtgatgtgcagtggatgacagcaggaagaggtataattcactcagaaatgcctgcaggagaaggcagtcaaaaggggttgcaactttggataaatctttcttctaaggacaaaatgattgagccaaggtatcaagaactactgaaagaagacataccaagagcagagaacgatggtgttgaagtaaaagttatagcaggtgcagcgatggaagtccaatccccggtttacacacgaacgcctacaatgtacctcgatttcaccctacaaccaacagcttactatcatcaagccatccccgagtcttggaatgcgtttgtgtatatagttgaaggagaaggagttttcggaattccgaattcaggtcctgtatcagctcaccattgcttggttttaggccctggagagggacttagtgtgtggaacaagtcttcaaagccattaagatttgttcttttaggtggacaacctcttaatgaacctgtggttcaacatggtccatttgtgatgaactcacaagatgaaattgatcaaacatttgagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="-" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="16025" stop="13379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15725" g_stop="15699" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15698" i_stop="15465" i_length="234">
            <donor d_prob="0.843" d_score="0.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15464" g_stop="15397" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="95" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15396" i_stop="15001" i_length="396">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15000" g_stop="14938" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="158" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14937" i_stop="14746" i_length="192">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14745" g_stop="14642" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="262" r_length="104" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14641" i_stop="14108" i_length="534">
            <donor d_prob="0.969" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14107" g_stop="13679" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="691" r_length="429" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="-" ref_id="SGN-E451029" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E451029" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15725" e_stop="15699"/>
          <exon e_start="15464" e_stop="15397"/>
          <exon e_start="15000" e_stop="14938"/>
          <exon e_start="14745" e_stop="14642"/>
          <exon e_start="14107" e_stop="13679"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCCTAATGTTGGATGAATTTTCAGGTACTGCTTTGAGTAATGTTGCTTGGATCCTCCAAAAATATTGTTCCACATGTGTCGGATTCTCCAAAAAGCCAAAAATACATAGCTTTTGGAGAATCTGAGACACACATGACGTATTTTTGAAGAGTCCGAGCAACTTAAGTTTTGAACATCTTACTGGAATATGTTGTTCATTTTTGCTTAGTTATTTTTTGAGCCAAGAAGAGTTGATAAAGTACTGTTTTATTGTTTCAGTTTCTGCTCCTGCTGGTTTTCCTGATCATCCACACAGAGGTTTTGAGACAGTAACTTACATGCTACAGGTAAAAACAGTTAGTTGCACACTTCAATCCTATATAATAATAGTGAGGGAAAGGGCGGACGAAGGGTGGAAAATGAAAGGCCTTTTCTTGTTCCCTAAGGCTGTGTGTGTGCCACGACCAAACACCTGTTCGATGCTCTTTAACCTCCCAATAATGATGGCTCTTTTGTCTTGGTATCCTAACCATCCAACAAAGAATAAGCAGCAAAGTGCCAAATGACATGTCTTGTTGAATCCATTGAATCGTACTGAGGCAGATGTAGTGTTTACTTGAACCCAATATTTTTGACACAAAACACAAAAATAAACGCACATCAAATTCTGAACTCATAATTTCAAAAGTGAAACGGGCACAGAAGATGTTGATAATGCTAATGTTGTGTTTTCGTTTCCTTAGGGAGCTTTTACTCATCAAGATTTTGCTGGTCACAAGGGCACAATTAATACTGGTGATGTGCAGGTATAGAATATTCAGCTCTTAACATTTTTACTTACAAGATATGTAGTTCGGATTCTCCAAAAATGCATAACTCTTGGAATATCCGACACACGTTCGACAATGTTATTAAAGAATCCAAGCAGCATAGCTTATAAGAACAGAAGAGATATTTTGGTTGCTGATTTATGTTTCTTATATTGGATGATATTGCAGTGGATGACAGCAGGAAGAGGTATAATTCATTCAGAAATGCCTGCAGGAGAAGGCAGTCAAAAGGGGTTGCAACTTTGGATAAATCTCTCTTCTAAGGACAAAATGTAAGTTAGTCATTTAATCATTAGAAGCTTTCGGTCTTATCACTCCTTTTGACCTATGTTGCTCGTACTCTTTGAAAATGCTGGCACACCCGTTTCAGATCCTCCATAAATGCACTATTATTTGGAGATTCTGACACGTGTCTATTGGCATTTTTAAAGAGTACCAGCAACACAACTTTTGACTGACCCCATATAGATACTTTACACACCACTACTTTATTGTACTTGGCTCTAGCATATAGTAGTAAAAAAATAATGTTAGCTCTTATCCTACTTTTATTGTGGGGCGGGGGGTTAGGAGTATTACTAGTATGCAGTATAAAGATTAATCATTCACTTTTCTGTTTCTGCTGTGTTTTGCTAAGCTTAATCATTCACTTTTGACTAACTTCTCAAAATCAAGATTTAGTTTGAACCAATATTTTCCCATGTTCAAGTTTATAGCCCAAAACGAAGACTTTGTGGCGAACACACGTTTGATATGTGATTGCTTTTTCTTTTTCAATTATTATTAAGTTCAAAGTTCAACTACAGGATTGAGCCAAGGTATCAAGAACTGCTGAAAGAAGACATACCAAGAGCAGAGAATGATGGTGTTAAAGTAAAAGTTATAGCAGGTGAAGCAATGGGAGTCCAATCCCCGGTTTACACACAAACGCCTACAATGTACCTCGATTTCACCCTACAACCAACAGCTTACTATCATCAAGCCATCCCTGAATCTTGGAACGCCTTCGTATATATAGTTGAAGGAGAAGGTGTCTTCGGAATTCCGAGTTCAGGTCCTGTATCAGCTCACCATTGCTTGGTTTTAGGCCCTGGAGAGGGACTTAGTGTATGGAACAAGTCTTCAAAGCCATTAAGATTTGTTCTTTTAGGTGGACAACCTCTTAATGAACCTGTGGTTCAACATGGTCCTTTTGTGATGAACTCACAAGATGAAATTGATCAAACATTTGAAGA</genome_strand>
        <mrna_strand>CTTTCCTCATGTTGGATGAATTTTCAG..........................................................................................................................................................................................................................................TTTCTGCTCCTGCTGGTTTTCCTGATCATCCACACAGAGGTTTTGAGACAGTAACTTACATGCTACAG............................................................................................................................................................................................................................................................................................................................................................................................................GGAGCTTTTACTCATCAAGATTTTGCTGGTCACAAGGGCACAATCAATACTGGTGATGTGCAG................................................................................................................................................................................................TGGATGACAGCAGGAAGAGGTATAATTCACTCAGAAATGCCTGCAGGAGAAGGCAGTCAAAAGGGGTTGCAACTTTGGATAAATCTTTCTTCTAAGGACAAAAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGAGCCAAGGTATCAAGAACTACTGAAAGAAGACATACCAAGAGCAGAGAACGATGGTGTTGAAGTAAAAGTTATAGCAGGTGCAGCGATGGAAGTCCAATCCCCGGTTTACACACGAACGCCTACAATGTACCTCGATTTCACCCTACAACCAACAGCTTACTATCATCAAGCCATCCCCGAGTCTTGGAATGCGTTTGTGTATATAGTTGAAGGAGAAGGAGTTTTCGGAATTCCGAATTCAGGTCCTGTATCAGCTCACCATTGCTTGGTTTTAGGCCCTGGAGAGGGACTTAGTGTGTGGAACAAGTCTTCAAAGCCATTAAGATTTGTTCTTTTAGGTGGACAACCTCTTAATGAACCTGTGGTTCAACATGGTCCATTTGTGATGAACTCACAAGATGAAATTGATCAAACATTTGAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E423685" ref_strand="+" ref_description="SGN-E423685 [STM-42-M8]">
      <seq>ctttcctcatgttggatgaattttcagtttctgctcctgctggttttcctgatcatccacacagaggttttgagacagtaacttacatgctacagggagcttttactcatcaagattttgctggtcacaagggcacaatcaatactggtgatgtgcagtggatgacagcaggaagaggtataattcactcagaaatgcctgcaggagaaggcagtcaaaaggggttgcaactttggataaatctttcttctaaggacaaaatgattgagccaaggtatcaagaactactgaaagaagacataccaagagcagagaacgatggtgttgaagtaaaagttatagcaggtgcagcgatggaagtccaatccccggtttacacacgaacgcctacaatgtacctcgatttcaccctacaaccaacagcttactatcatcaagccatccccgagtcttggaatgcgtttgtgtatatagttgaaggagaaggagttttcggaattccgaattcaggtcctgtatcagctcaccattgcttggttttaggccctggagagggacttagtgtgtggaacaagtcttcaagccatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="-" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="16025" stop="13480"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15725" g_stop="15699" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15698" i_stop="15465" i_length="234">
            <donor d_prob="0.843" d_score="0.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15464" g_stop="15397" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="95" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15396" i_stop="15001" i_length="396">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15000" g_stop="14938" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="158" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14937" i_stop="14746" i_length="192">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14745" g_stop="14642" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="262" r_length="104" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14641" i_stop="14108" i_length="534">
            <donor d_prob="0.969" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14107" g_stop="13780" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="589" r_length="327" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="-" ref_id="SGN-E423685" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E423685" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15725" e_stop="15699"/>
          <exon e_start="15464" e_stop="15397"/>
          <exon e_start="15000" e_stop="14938"/>
          <exon e_start="14745" e_stop="14642"/>
          <exon e_start="14107" e_stop="13780"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCCTAATGTTGGATGAATTTTCAGGTACTGCTTTGAGTAATGTTGCTTGGATCCTCCAAAAATATTGTTCCACATGTGTCGGATTCTCCAAAAAGCCAAAAATACATAGCTTTTGGAGAATCTGAGACACACATGACGTATTTTTGAAGAGTCCGAGCAACTTAAGTTTTGAACATCTTACTGGAATATGTTGTTCATTTTTGCTTAGTTATTTTTTGAGCCAAGAAGAGTTGATAAAGTACTGTTTTATTGTTTCAGTTTCTGCTCCTGCTGGTTTTCCTGATCATCCACACAGAGGTTTTGAGACAGTAACTTACATGCTACAGGTAAAAACAGTTAGTTGCACACTTCAATCCTATATAATAATAGTGAGGGAAAGGGCGGACGAAGGGTGGAAAATGAAAGGCCTTTTCTTGTTCCCTAAGGCTGTGTGTGTGCCACGACCAAACACCTGTTCGATGCTCTTTAACCTCCCAATAATGATGGCTCTTTTGTCTTGGTATCCTAACCATCCAACAAAGAATAAGCAGCAAAGTGCCAAATGACATGTCTTGTTGAATCCATTGAATCGTACTGAGGCAGATGTAGTGTTTACTTGAACCCAATATTTTTGACACAAAACACAAAAATAAACGCACATCAAATTCTGAACTCATAATTTCAAAAGTGAAACGGGCACAGAAGATGTTGATAATGCTAATGTTGTGTTTTCGTTTCCTTAGGGAGCTTTTACTCATCAAGATTTTGCTGGTCACAAGGGCACAATTAATACTGGTGATGTGCAGGTATAGAATATTCAGCTCTTAACATTTTTACTTACAAGATATGTAGTTCGGATTCTCCAAAAATGCATAACTCTTGGAATATCCGACACACGTTCGACAATGTTATTAAAGAATCCAAGCAGCATAGCTTATAAGAACAGAAGAGATATTTTGGTTGCTGATTTATGTTTCTTATATTGGATGATATTGCAGTGGATGACAGCAGGAAGAGGTATAATTCATTCAGAAATGCCTGCAGGAGAAGGCAGTCAAAAGGGGTTGCAACTTTGGATAAATCTCTCTTCTAAGGACAAAATGTAAGTTAGTCATTTAATCATTAGAAGCTTTCGGTCTTATCACTCCTTTTGACCTATGTTGCTCGTACTCTTTGAAAATGCTGGCACACCCGTTTCAGATCCTCCATAAATGCACTATTATTTGGAGATTCTGACACGTGTCTATTGGCATTTTTAAAGAGTACCAGCAACACAACTTTTGACTGACCCCATATAGATACTTTACACACCACTACTTTATTGTACTTGGCTCTAGCATATAGTAGTAAAAAAATAATGTTAGCTCTTATCCTACTTTTATTGTGGGGCGGGGGGTTAGGAGTATTACTAGTATGCAGTATAAAGATTAATCATTCACTTTTCTGTTTCTGCTGTGTTTTGCTAAGCTTAATCATTCACTTTTGACTAACTTCTCAAAATCAAGATTTAGTTTGAACCAATATTTTCCCATGTTCAAGTTTATAGCCCAAAACGAAGACTTTGTGGCGAACACACGTTTGATATGTGATTGCTTTTTCTTTTTCAATTATTATTAAGTTCAAAGTTCAACTACAGGATTGAGCCAAGGTATCAAGAACTGCTGAAAGAAGACATACCAAGAGCAGAGAATGATGGTGTTAAAGTAAAAGTTATAGCAGGTGAAGCAATGGGAGTCCAATCCCCGGTTTACACACAAACGCCTACAATGTACCTCGATTTCACCCTACAACCAACAGCTTACTATCATCAAGCCATCCCTGAATCTTGGAACGCCTTCGTATATATAGTTGAAGGAGAAGGTGTCTTCGGAATTCCGAGTTCAGGTCCTGTATCAGCTCACCATTGCTTGGTTTTAGGCCCTGGAGAGGGACTTAGTGTATGGAACAAGTCTTCAAAGCCATTA</genome_strand>
        <mrna_strand>CTTTCCTCATGTTGGATGAATTTTCAG..........................................................................................................................................................................................................................................TTTCTGCTCCTGCTGGTTTTCCTGATCATCCACACAGAGGTTTTGAGACAGTAACTTACATGCTACAG............................................................................................................................................................................................................................................................................................................................................................................................................GGAGCTTTTACTCATCAAGATTTTGCTGGTCACAAGGGCACAATCAATACTGGTGATGTGCAG................................................................................................................................................................................................TGGATGACAGCAGGAAGAGGTATAATTCACTCAGAAATGCCTGCAGGAGAAGGCAGTCAAAAGGGGTTGCAACTTTGGATAAATCTTTCTTCTAAGGACAAAAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGAGCCAAGGTATCAAGAACTACTGAAAGAAGACATACCAAGAGCAGAGAACGATGGTGTTGAAGTAAAAGTTATAGCAGGTGCAGCGATGGAAGTCCAATCCCCGGTTTACACACGAACGCCTACAATGTACCTCGATTTCACCCTACAACCAACAGCTTACTATCATCAAGCCATCCCCGAGTCTTGGAATGCGTTTGTGTATATAGTTGAAGGAGAAGGAGTTTTCGGAATTCCGAATTCAGGTCCTGTATCAGCTCACCATTGCTTGGTTTTAGGCCCTGGAGAGGGACTTAGTGTGTGGAACAAGTCTTC-AAGCCATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E213196" ref_strand="+" ref_description="SGN-E213196 [cLEC-72-H19]">
      <seq>tatatgagagctatttctgaactatttttagtgaaaatcttcccatttgttagaaataaaaaagtttcaagaaagcctattttttttcctattagaaatattaatatgtctgaatcaaatcaatatgattcttgttttgatagaccaagattggttattaagaaagttttggctaaacctcaaagtgaagggaatggagctgttgttagaagaagcattggaaggcatgaattgaggaatcttgatcctttcctaatgttggatgaattttcagtttctgctcctgctggttttcctgatcatccacacagaggttttgagacagtaacttacatgctacagggagcttttactcatcaagattttgctggtcacaagggcacaattaatactggtgatgtgcagtggatgacagcaggaagaggtataattcattcagaaatgcctgcaggagaaggcagtcaaaaggggttgcaactttggataaatctctcttctaaggacaaaatgattgagccaaggtatcaagaactgctgaaagaagacataccaagagcagagaatgatggtgttaaagtaaaagttatagcaggtgaagcaatgggagtccaatccccggtttacacacaaacgcctacaatgtacctcgatttcacccctacaccaacagcttactatcatncagccatccctgaatcttggaaacgcttcgtatatatagttgaaaggagaagtgtcttcggaattccgagntcaggtcctgtatcagctcaccattgcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="-" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="16676" stop="13534"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16376" g_stop="16153" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="224" r_length="224" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16152" i_stop="15749" i_length="404">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15748" g_stop="15699" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="274" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15698" i_stop="15465" i_length="234">
            <donor d_prob="0.843" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15464" g_stop="15397" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="342" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15396" i_stop="15001" i_length="396">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15000" g_stop="14938" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="405" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14937" i_stop="14746" i_length="192">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14745" g_stop="14642" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="509" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14641" i_stop="14108" i_length="534">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14107" g_stop="13834" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="783" r_length="274" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="-" ref_id="SGN-E213196" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>783</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213196" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16376" e_stop="16153"/>
          <exon e_start="15748" e_stop="15699"/>
          <exon e_start="15464" e_stop="15397"/>
          <exon e_start="15000" e_stop="14938"/>
          <exon e_start="14745" e_stop="14642"/>
          <exon e_start="14107" e_stop="13834"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATATGAGAGCTATTTCTGAACTATTTTTAGTGAAAATCTTCCCATTTGTTAGAAATAAAAAAGTTTCAAGAAAGCCTATTTTTTTTCCTATTAGAAATATTAATATGTCTGAATCAAATCAATATGATTCTTGTTTTGATAGACCAAGATTGGTTATTAAGAAAGTTTTGGCTAAACCTCAAAGTGAAGGGAATGGAGCTGTTGTTAGAAGAAGCATTGGAAGGTAATAAAATTTGGGATTTTTATATTTTTCACATTTTCTTTTTGTTGATTTTAAATTTTGTTTCTAAATTTTATGACTTTTTTGTCATTTGGGTATTTTTCATTTTGGACAGTAAAAGAAGTAACTTTAATAGGAAATTGTGTTTTGAAACTTTGACCTTGATGTGTTTTCTTGGTTTCCATATTGTAAAGTCTCTGTCTTTACGTGGTCTCGAATAAAGTTAGCTAGTACCTGTGTTATTAGTGCGAGTTGATAAATATCTCGTGTAATTAGTTAAGGTGCGGAAAAGCCGCCAATACACTACAAATATCAAAAAGAAAAAAAAAGTATGTGTTTGTGATTTTTTCTTTAATCTTGTTGCTTATTGAATGTGGGGATTTTGTTTTAAAAATTTGATCCTGCAGGCATGAATTGAGGAATCTTGATCCTTTCCTAATGTTGGATGAATTTTCAGGTACTGCTTTGAGTAATGTTGCTTGGATCCTCCAAAAATATTGTTCCACATGTGTCGGATTCTCCAAAAAGCCAAAAATACATAGCTTTTGGAGAATCTGAGACACACATGACGTATTTTTGAAGAGTCCGAGCAACTTAAGTTTTGAACATCTTACTGGAATATGTTGTTCATTTTTGCTTAGTTATTTTTTGAGCCAAGAAGAGTTGATAAAGTACTGTTTTATTGTTTCAGTTTCTGCTCCTGCTGGTTTTCCTGATCATCCACACAGAGGTTTTGAGACAGTAACTTACATGCTACAGGTAAAAACAGTTAGTTGCACACTTCAATCCTATATAATAATAGTGAGGGAAAGGGCGGACGAAGGGTGGAAAATGAAAGGCCTTTTCTTGTTCCCTAAGGCTGTGTGTGTGCCACGACCAAACACCTGTTCGATGCTCTTTAACCTCCCAATAATGATGGCTCTTTTGTCTTGGTATCCTAACCATCCAACAAAGAATAAGCAGCAAAGTGCCAAATGACATGTCTTGTTGAATCCATTGAATCGTACTGAGGCAGATGTAGTGTTTACTTGAACCCAATATTTTTGACACAAAACACAAAAATAAACGCACATCAAATTCTGAACTCATAATTTCAAAAGTGAAACGGGCACAGAAGATGTTGATAATGCTAATGTTGTGTTTTCGTTTCCTTAGGGAGCTTTTACTCATCAAGATTTTGCTGGTCACAAGGGCACAATTAATACTGGTGATGTGCAGGTATAGAATATTCAGCTCTTAACATTTTTACTTACAAGATATGTAGTTCGGATTCTCCAAAAATGCATAACTCTTGGAATATCCGACACACGTTCGACAATGTTATTAAAGAATCCAAGCAGCATAGCTTATAAGAACAGAAGAGATATTTTGGTTGCTGATTTATGTTTCTTATATTGGATGATATTGCAGTGGATGACAGCAGGAAGAGGTATAATTCATTCAGAAATGCCTGCAGGAGAAGGCAGTCAAAAGGGGTTGCAACTTTGGATAAATCTCTCTTCTAAGGACAAAATGTAAGTTAGTCATTTAATCATTAGAAGCTTTCGGTCTTATCACTCCTTTTGACCTATGTTGCTCGTACTCTTTGAAAATGCTGGCACACCCGTTTCAGATCCTCCATAAATGCACTATTATTTGGAGATTCTGACACGTGTCTATTGGCATTTTTAAAGAGTACCAGCAACACAACTTTTGACTGACCCCATATAGATACTTTACACACCACTACTTTATTGTACTTGGCTCTAGCATATAGTAGTAAAAAAATAATGTTAGCTCTTATCCTACTTTTATTGTGGGGCGGGGGGTTAGGAGTATTACTAGTATGCAGTATAAAGATTAATCATTCACTTTTCTGTTTCTGCTGTGTTTTGCTAAGCTTAATCATTCACTTTTGACTAACTTCTCAAAATCAAGATTTAGTTTGAACCAATATTTTCCCATGTTCAAGTTTATAGCCCAAAACGAAGACTTTGTGGCGAACACACGTTTGATATGTGATTGCTTTTTCTTTTTCAATTATTATTAAGTTCAAAGTTCAACTACAGGATTGAGCCAAGGTATCAAGAACTGCTGAAAGAAGACATACCAAGAGCAGAGAATGATGGTGTTAAAGTAAAAGTTATAGCAGGTGAAGCAATGGGAGTCCAATCCCCGGTTTACACACAAACGCCTACAATGTACCTCGATTTCA-CCCTACAACCAACAGCTTACTATCATCAAGCCATCCCTGAATCTTGGAACGCCTTCGTATATATAGTTG-AAGGAGAAGGTGTCTTCGGAATTCCGAGTTCAGGTCCTGTATCAGCTCACCATTGCTTG</genome_strand>
        <mrna_strand>TATATGAGAGCTATTTCTGAACTATTTTTAGTGAAAATCTTCCCATTTGTTAGAAATAAAAAAGTTTCAAGAAAGCCTATTTTTTTTCCTATTAGAAATATTAATATGTCTGAATCAAATCAATATGATTCTTGTTTTGATAGACCAAGATTGGTTATTAAGAAAGTTTTGGCTAAACCTCAAAGTGAAGGGAATGGAGCTGTTGTTAGAAGAAGCATTGGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................GCATGAATTGAGGAATCTTGATCCTTTCCTAATGTTGGATGAATTTTCAG..........................................................................................................................................................................................................................................TTTCTGCTCCTGCTGGTTTTCCTGATCATCCACACAGAGGTTTTGAGACAGTAACTTACATGCTACAG............................................................................................................................................................................................................................................................................................................................................................................................................GGAGCTTTTACTCATCAAGATTTTGCTGGTCACAAGGGCACAATTAATACTGGTGATGTGCAG................................................................................................................................................................................................TGGATGACAGCAGGAAGAGGTATAATTCATTCAGAAATGCCTGCAGGAGAAGGCAGTCAAAAGGGGTTGCAACTTTGGATAAATCTCTCTTCTAAGGACAAAAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGAGCCAAGGTATCAAGAACTGCTGAAAGAAGACATACCAAGAGCAGAGAATGATGGTGTTAAAGTAAAAGTTATAGCAGGTGAAGCAATGGGAGTCCAATCCCCGGTTTACACACAAACGCCTACAATGTACCTCGATTTCACCCCTAC-ACCAACAGCTTACTATCATNCAGCCATCCCTGAATCTTGGAAACGCTTCGTATATATAGTTGAAAGGAGAA-GTGTCTTCGGAATTCCGAGNTCAGGTCCTGTATCAGCTCACCATTGCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E316028" ref_strand="+" ref_description="SGN-E316028 [cTOA-23-E22]">
      <seq>aagacaggaaaaaaaatttaatgcagaaataggcgaagaaaattggggaaaatattgaggaagataaagggggaatcgacattgaataactaattatggcattttcatggcgttttattggactatctattcttgtttttcttctaaatgtatcatcaatagcacattctgctcctaccaatgcagataagtcttgcagcaatgaaatcaatatgatgctggtgaagttgtgggttaatggtggtgaggaagattcaatagttggcttgagtgcagcatttgggtctgtattacccactgatactaaacgtgcctccaggttgcctgctgtttatacacaacctttgaatggctgttctgcttcctccactaagttatcaggctctattgcactagctcgtcgcggtgaatgtgaatttataaccaaggccacggtcgcccaagcaggaggtgcaggaggtgttgtgctaataaataatgaaggaggtactctggatattgcttgtcctaataattctaccatatcaaatgtaaccattcctgttgtttcaatttcaaaagagggggcagatattattgataaatacatcaattcaggaaagaaagtggagctgctgttatattcgccagatcgccctattgtggactactcggtgtctttcatatggntgatggctgttggaacaatcatttgtgcagctctttggaaaaagtttactcatctaaggaaagtgacgactatgaactatcacaagagcccccttcccctatctcaattgacatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="+" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="23494" stop="27716"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23794" g_stop="24008" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="215" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24009" i_stop="25017" i_length="1009">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25018" g_stop="25176" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="374" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25177" i_stop="26257" i_length="1081">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26258" g_stop="26369" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="486" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26370" i_stop="26474" i_length="105">
            <donor d_prob="0.693" d_score="1.00"/>
            <acceptor a_prob="0.704" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26475" g_stop="26594" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="606" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26595" i_stop="27255" i_length="661">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="27256" g_stop="27437" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="607" r_stop="786" r_length="180" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="+" ref_id="SGN-E316028" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>788</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316028" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23794" e_stop="24008"/>
          <exon e_start="25018" e_stop="25176"/>
          <exon e_start="26258" e_stop="26369"/>
          <exon e_start="26475" e_stop="26594"/>
          <exon e_start="27256" e_stop="27437"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGACAGGAAAAAAAATTTAATGCAGAAATAGGCGAAGAAAATTGGGGAAAATATTGAGGAAGATAAAGGGGGAATCGACATTGAATAACTAATTATGGCATTTTCATGGCGTTTTATTGGACTATCTATTCTTGTTTTTCTTCTAAATGTATCATCAATAGCACATTCTGCTCCTACCAATGCAGATAAGTCTTGCAGCAATGAAATCAATATGGTAAATGTTTTCAACCCTTTAACTAAATAGATAAAATAAATTGTGGGGTTTGTTTTTTGGGTGGATATTGTGTTAAAAATGTAATCTTTCATGGGTTTTGTAGATTTTTTTATTTGATGTTGTCATTTCTTGATTATGTGGAAAGTCATGACGGGGTTATGTATTGTTTTCTTTTGAGGGGGTTCAATAGTTAAGGATCTTTGTTTGGAATGGACATGTTGGTGGGAGGTGATACGTATCTAGTGGAATTAGTTGAGCTGGCCTAGACACCGCGATTATCATAAAAAGAAAAAACAATCTTTTTCGGGTAATGTTAATAAGATGATTTGAAATGGTGAGGATTGGGTTCATGCATTTGGTGGAATTTGTTGTGAAATGGAGTTATTTGATACATCATGTTTTGATCCTGTGCCGGGGTGGTAGAGTTACTCAGTGGAATAGTTGAGGTGTGGGCAAGTTAGCTCGGACACCACCTCCATAAAAAAGTTTAATTTGAGGTTTTGATGTGTGTGTTATAAGATTACTATACAAGGATTTATTCAAAATTTATTATACTCTTTCCATTCACTTTTACTTGTCCATTTTGGACTTTGCGCACCCTTGAGAAACAATGATTGAAATGATTATTTTACCACAATTTCCATGTTAGTTGATGTTTAGTCTCAGCTCTTTGGAAATGATTTGGAGTATAAGTAGTTAATGTGAGGGGTAAAACATGAAATAGATATGTTTTTCTGTTGATATGTTAAAAGTGACGAGTAAAACTGAAAATGTATTTTTAGTATAGACTAAAGTGGAGAAGTAAAAGTGAATTGAGAGCATATATTTAGGGTTGTATTTAGAAATAGGATGTATCGAAACTGCAACTTGATAAGAGATTGCATTTAACATGTAGAAGATTGTTTTGGTCCATTTCTTAACTGGACTTGAAGTATTCTCTATTTCCATCCTGTTTTGCATGTATAGAAACTTACCGTGCTAATCATTCTTTTCCTTTCTTTTGTTAAAGATGCTGGTGAAGTTGTGGGTTAATGGTGGTGAGGAAGATTCAATAGTTGGCTTGAGTGCAGCATTTGGGTCTGTATTACCCACTGATACTAAACGTGCCTCCAGGTTGCCTGCTGTTTATACACAACCTTTGAATGGCTGTTCTGCTTCCTCCACTAAGGTATTTACTCCACATTCCTTACACACCTACTTTTAGGTGGATATCGGACACGAAACATTGTGTTGCTGCTTGATTAAATAATAGTCATAATTCTTTTGCGGCCCAATTTCGGTTCTTTTGATCTTTCTTGATGATATTCCATCTCTCATTTGTTAACTTGCGAATATTTGCCAAGTCCTGCTATAAGAGCGAAGAATTGATGCAAATCTCAGCAAGGTTGAAAAGATTTAAGGAGCTGAATAGTGAACCAATCTCATTTATATAAAGGAGAAGTGAAGAAACAATTTTTTTAAAAATGTAGTTTTGGTGAAAACATCTACATGTGAAGCCATTGACCATCTCTTTGTCTTCTATCAGGAAGTTATAATTCAAACTTCTCAACTCTGCATACAACAACTTATTTTCAGCATATAAGAAAACTTGAAGTGTAAGTTTCACTCGTGAAAATGGAAATATACTTCTTTCTGGTGGATCACAGTGGAGGGTTGAAATAGGAGAAAAGAGTAGTTATGGAGATAGGTTGAGGATGATGTAGCACTATGTACAGGACGGTGAAGGAATGATCTCTTGAGAGCTTAAAAGTAGCCACAATCTTTCCTTCTTCTTTTTGATTAATATGATGAACTAAACACATACTAGATAAATAGTTAAATACCTTACTGAACAACCTTTTGTTCTGTCGTGAGTCTTGTCAACACCCTCACCCCTCTCTGGACAGAAACTCATCTTCATATAAGCTCTTGCTTGAATTGTTTATAAGTTTTTCAAGTGATAATCATTGTTTACATCATCTTCCAAAATTTAGAGGAAAAATATCCTTTTCATGGTAGTTTTCAGAAGTGGAACCAAATAGTAGTGTGGAGTAATTTCAAATTGTAAAATGAGCTGAAAGGGTTACCACTAGGATCTACCAGAAGTTAACTATTACAAACTGAGTTTTTACTTTGAATACCAAAGAAGTCTAAATTTGCTATGTCTGTTTGGCTGTTGTAAAAATAGGCTCGAGAATGTCCTATAAAAAGAAAATAATAGTGTTGTTGTTTGTTATACATTAATAATGCAGAAATATCATTTGTTCTAGTTATCAGGCTCTATTGCACTAGCTCGTCGCGGTGAATGTGAATTTATAACCAAGGCCACGGTCGCCCAAGCAGGAGGTGCAGGAGGTGTTGTGCTAATAAATAATGAAGGAGGTTGTAACCCTGACTCACATTGTCATCTTAGGTCTCAAGGTCTCTTTTATATGTTTCCCTTCATCTCTTTCTGATATGACGCCGCTTTTTCTTGCATTTATTTAGGTACTCTGGATATTGCTTGTCCTAATAATTCTACCATATCAAATGTAACCATTCCTGTTGTTTCAATTTCAAAAGAGGGGGCAGATATTATTGATAAATACATCAATTCAGGAAAGAAAGGTAAGCCCTGGCCTCATATGTATTGCTTAGATGTTTTGATGAAGGTTAGCTTTCTTTTGGATTCTAATTTTGGTTGTCAAGATGTTGATTAGCTTGTGTTGTAATCTACTTTTTCTATATTACATGCATTATAATTCATTTTAATGAGTGCTATTGAAGTATGAAATATCTTTATTATATATCATTGAGATGTAATCCCACTTCTTGCTGGTTAACTTTTGGTGCAAACAAGAGGTCCTTGTTGCATATATTGTTGGGTGTATTCTGTAGGAACTGTATGCCATTTGTGTGTTTGTATAAAGCTTTTAGATGATTCTTCATCTATTTATGGTTGGATCTTGATGATGTGACTTCACCGCAAAAGGCATGTCAGGTTAATACTTTGAAAAAACATTTAAGCAATGAGTTTGGGATGAAGGTTTTGTGTGATGTAACGAAGATAGAAGATCAAAAATTGATTTTCTCTTCAAATTGTCAGACATAGCTGGTGAGAATGTGGACTTAAATGCAGTGTTGGCTAACATCAAATGGCTTTTTTATTTGCAAACGATTATAGTGACTCTGTAATTGATGCATATCTTTTGTTCTGATCTTATTTCTTGTTGTTTGTTTTATTTCACTTGGAATACTTTTGATATATGGAATCCTTTTCTTAATCCAGTGGAGCTGCTGTTATATTCGCCAGATCGCCCTATTGTGGACTACTCGGTGTCTTTCATATGGTTGATGGCTGTTGGAACAATCATTTGTGCAGCTCTTTGGAAAAAGTTTACTCAATCTAAGGAAAGTGACGACTATGAACTATCACAAGAGCCCCCTTCCTAATCTCAAATTTGACATGCT</genome_strand>
        <mrna_strand>AAGACAGGAAAAAAAATTTAATGCAGAAATAGGCGAAGAAAATTGGGGAAAATATTGAGGAAGATAAAGGGGGAATCGACATTGAATAACTAATTATGGCATTTTCATGGCGTTTTATTGGACTATCTATTCTTGTTTTTCTTCTAAATGTATCATCAATAGCACATTCTGCTCCTACCAATGCAGATAAGTCTTGCAGCAATGAAATCAATATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTGGTGAAGTTGTGGGTTAATGGTGGTGAGGAAGATTCAATAGTTGGCTTGAGTGCAGCATTTGGGTCTGTATTACCCACTGATACTAAACGTGCCTCCAGGTTGCCTGCTGTTTATACACAACCTTTGAATGGCTGTTCTGCTTCCTCCACTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATCAGGCTCTATTGCACTAGCTCGTCGCGGTGAATGTGAATTTATAACCAAGGCCACGGTCGCCCAAGCAGGAGGTGCAGGAGGTGTTGTGCTAATAAATAATGAAGGAG.........................................................................................................GTACTCTGGATATTGCTTGTCCTAATAATTCTACCATATCAAATGTAACCATTCCTGTTGTTTCAATTTCAAAAGAGGGGGCAGATATTATTGATAAATACATCAATTCAGGAAAGAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCTGCTGTTATATTCGCCAGATCGCCCTATTGTGGACTACTCGGTGTCTTTCATATGGNTGATGGCTGTTGGAACAATCATTTGTGCAGCTCTTTGGAAAAAGTTTACTC-ATCTAAGGAAAGTGACGACTATGAACTATCACAAGAGCCCCCTTCC-CCTATCTCAATTGACATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E361106" ref_strand="+" ref_description="SGN-E361106 [cLPP-13-M8]">
      <seq>agcatttgggtctgtattacccactgatactaaacgtgcctccaggttgcctgctgttaatacacaacctttgaatggctgttctgcttcctccactaagttatcaggctctattgcactagctcgtcgcggtgaatgtgactttataaccaaggccacggttgcccaagcaggaggtgcaggaggtgttgtgctaataaataatgaagcaggtactctggatattgcttgtcctaataattctaccatatcaaatgtaaccattcctgttgtttcaatttcaaaagagggggcagatattattgataaatacatcaattcaggaaagaaagtggagctgctgttatattcgccagatcgccctattgtggactactcggtgtctttcatatggttgatggctgttggaacaatcatttgtgcagctctttggaaaaagtttactcaatctaaggatgatgatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="+" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="24777" stop="27679"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25077" g_stop="25176" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25177" i_stop="26257" i_length="1081">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.908" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26258" g_stop="26369" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="212" r_length="112" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26370" i_stop="26474" i_length="105">
            <donor d_prob="0.693" d_score="0.96"/>
            <acceptor a_prob="0.704" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26475" g_stop="26594" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="332" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26595" i_stop="27255" i_length="661">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27256" g_stop="27388" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="465" r_length="133" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="+" ref_id="SGN-E361106" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361106" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25077" e_stop="25176"/>
          <exon e_start="26258" e_stop="26369"/>
          <exon e_start="26475" e_stop="26594"/>
          <exon e_start="27256" e_stop="27388"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATTTGGGTCTGTATTACCCACTGATACTAAACGTGCCTCCAGGTTGCCTGCTGTTTATACACAACCTTTGAATGGCTGTTCTGCTTCCTCCACTAAGGTATTTACTCCACATTCCTTACACACCTACTTTTAGGTGGATATCGGACACGAAACATTGTGTTGCTGCTTGATTAAATAATAGTCATAATTCTTTTGCGGCCCAATTTCGGTTCTTTTGATCTTTCTTGATGATATTCCATCTCTCATTTGTTAACTTGCGAATATTTGCCAAGTCCTGCTATAAGAGCGAAGAATTGATGCAAATCTCAGCAAGGTTGAAAAGATTTAAGGAGCTGAATAGTGAACCAATCTCATTTATATAAAGGAGAAGTGAAGAAACAATTTTTTTAAAAATGTAGTTTTGGTGAAAACATCTACATGTGAAGCCATTGACCATCTCTTTGTCTTCTATCAGGAAGTTATAATTCAAACTTCTCAACTCTGCATACAACAACTTATTTTCAGCATATAAGAAAACTTGAAGTGTAAGTTTCACTCGTGAAAATGGAAATATACTTCTTTCTGGTGGATCACAGTGGAGGGTTGAAATAGGAGAAAAGAGTAGTTATGGAGATAGGTTGAGGATGATGTAGCACTATGTACAGGACGGTGAAGGAATGATCTCTTGAGAGCTTAAAAGTAGCCACAATCTTTCCTTCTTCTTTTTGATTAATATGATGAACTAAACACATACTAGATAAATAGTTAAATACCTTACTGAACAACCTTTTGTTCTGTCGTGAGTCTTGTCAACACCCTCACCCCTCTCTGGACAGAAACTCATCTTCATATAAGCTCTTGCTTGAATTGTTTATAAGTTTTTCAAGTGATAATCATTGTTTACATCATCTTCCAAAATTTAGAGGAAAAATATCCTTTTCATGGTAGTTTTCAGAAGTGGAACCAAATAGTAGTGTGGAGTAATTTCAAATTGTAAAATGAGCTGAAAGGGTTACCACTAGGATCTACCAGAAGTTAACTATTACAAACTGAGTTTTTACTTTGAATACCAAAGAAGTCTAAATTTGCTATGTCTGTTTGGCTGTTGTAAAAATAGGCTCGAGAATGTCCTATAAAAAGAAAATAATAGTGTTGTTGTTTGTTATACATTAATAATGCAGAAATATCATTTGTTCTAGTTATCAGGCTCTATTGCACTAGCTCGTCGCGGTGAATGTGAATTTATAACCAAGGCCACGGTCGCCCAAGCAGGAGGTGCAGGAGGTGTTGTGCTAATAAATAATGAAGGAGGTTGTAACCCTGACTCACATTGTCATCTTAGGTCTCAAGGTCTCTTTTATATGTTTCCCTTCATCTCTTTCTGATATGACGCCGCTTTTTCTTGCATTTATTTAGGTACTCTGGATATTGCTTGTCCTAATAATTCTACCATATCAAATGTAACCATTCCTGTTGTTTCAATTTCAAAAGAGGGGGCAGATATTATTGATAAATACATCAATTCAGGAAAGAAAGGTAAGCCCTGGCCTCATATGTATTGCTTAGATGTTTTGATGAAGGTTAGCTTTCTTTTGGATTCTAATTTTGGTTGTCAAGATGTTGATTAGCTTGTGTTGTAATCTACTTTTTCTATATTACATGCATTATAATTCATTTTAATGAGTGCTATTGAAGTATGAAATATCTTTATTATATATCATTGAGATGTAATCCCACTTCTTGCTGGTTAACTTTTGGTGCAAACAAGAGGTCCTTGTTGCATATATTGTTGGGTGTATTCTGTAGGAACTGTATGCCATTTGTGTGTTTGTATAAAGCTTTTAGATGATTCTTCATCTATTTATGGTTGGATCTTGATGATGTGACTTCACCGCAAAAGGCATGTCAGGTTAATACTTTGAAAAAACATTTAAGCAATGAGTTTGGGATGAAGGTTTTGTGTGATGTAACGAAGATAGAAGATCAAAAATTGATTTTCTCTTCAAATTGTCAGACATAGCTGGTGAGAATGTGGACTTAAATGCAGTGTTGGCTAACATCAAATGGCTTTTTTATTTGCAAACGATTATAGTGACTCTGTAATTGATGCATATCTTTTGTTCTGATCTTATTTCTTGTTGTTTGTTTTATTTCACTTGGAATACTTTTGATATATGGAATCCTTTTCTTAATCCAGTGGAGCTGCTGTTATATTCGCCAGATCGCCCTATTGTGGACTACTCGGTGTCTTTCATATGGTTGATGGCTGTTGGAACAATCATTTGTGCAGCTCTTTGGAAAAAGTTTACTCAATCTAAGGAAAGTGACGA</genome_strand>
        <mrna_strand>AGCATTTGGGTCTGTATTACCCACTGATACTAAACGTGCCTCCAGGTTGCCTGCTGTTAATACACAACCTTTGAATGGCTGTTCTGCTTCCTCCACTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATCAGGCTCTATTGCACTAGCTCGTCGCGGTGAATGTGACTTTATAACCAAGGCCACGGTTGCCCAAGCAGGAGGTGCAGGAGGTGTTGTGCTAATAAATAATGAAGCAG.........................................................................................................GTACTCTGGATATTGCTTGTCCTAATAATTCTACCATATCAAATGTAACCATTCCTGTTGTTTCAATTTCAAAAGAGGGGGCAGATATTATTGATAAATACATCAATTCAGGAAAGAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCTGCTGTTATATTCGCCAGATCGCCCTATTGTGGACTACTCGGTGTCTTTCATATGGTTGATGGCTGTTGGAACAATCATTTGTGCAGCTCTTTGGAAAAAGTTTACTCAATCTAAGGATGATGATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E366537" ref_strand="+" ref_description="SGN-E366537 [cLPT-13-C17]">
      <seq>agagctagacacccggagcttcaacaatatatccattcttctgtcaatggacttcttcctttcatacaaaagggattagttgagagagtggcggtgattttttctggtagcaacaatgtacctatcgagagatttgttttcaagataaatgtaaaccaatcctatggttcaaagttggaggaagctgatctggcgttctctcttaaatcatttttgatcaagcttccattgtcccaatcgttaatgaaggttcttccaccagattgcaggtgggagataacagcttacttccgctctctcccgcagagtggtaccagcaaagatgccgaaatttgggtcccaacagatactcagcagtggcagcaagcacctcttataactcctattaagtccatgagtagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="+" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="42188" stop="43601"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42488" g_stop="42559" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42560" i_stop="42861" i_length="302">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42862" g_stop="43051" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="262" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43052" i_stop="43161" i_length="110">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43162" g_stop="43301" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="402" r_length="140" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="+" ref_id="SGN-E366537" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366537" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42488" e_stop="42559"/>
          <exon e_start="42862" e_stop="43051"/>
          <exon e_start="43162" e_stop="43301"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGCTAGACACCCGGAGCTTCAACAATATATCCATTCTTCTGTCAATGGACTTCTTCCTTTCATACAAAAGGTGTATTGCATTTCTTTTCAACAGTCCTATAATAGTTAATTGGTCATCTTGGGTACTGGAGCTAATGTGTGAATTGACATTTCTAACTTCCCCCTTCCTCTCGCCACATTGTCCCCCCTTTTTCCTCAGGGGAAAAAACAGAGGAACTTTTTGACATGTCCTTAAACTTATAACAATTTATTGATCTTGTTTATCAGACAAATGCTATTGCTTTTGCAAGGGAAATGAGAGATTGGCACTATAGGCTGTCATTCTTGTGCTATTGTTGTTCTTCAAAAGTAATCATGTTTCTTTTCCTACAGGGATTAGTTGAGAGAGTGGCGGTGATTTTTTCTGGTAGCAACAATGTACCTATCGAGAGATTTGTTTTCAAGATAAATGTAAACCAATCCTATGGTTCAAAGTTGGAGGAAGCTGATCTGGCGTTCTCTCTTAAATCATTTTTGATCAAGCTTCCATTGTCCCAATCGTTAATGAAGGTTCTTCCACCAGGTAAGCTAATTAGGAACTTTATATCAAACGGCACTATAAATCTTCTTAGCTTTTGCAATTAGCCTTTGTGAGAATTCGAAGTGGTTTCCTCAACTTGTTAGCTTTGATAGATTGCAGGTGGGAGATAACAGCTTACTTCCGCTCTCTCCCGCAGAGTGGTACCAGCAAAGATGCCGAAATTTGGGTCCCAACAGATACACAGCAGTGGCAGCAAGCACCTCTTATAACTCCTATTAAGTCCATGAGTAGT</genome_strand>
        <mrna_strand>AGAGCTAGACACCCGGAGCTTCAACAATATATCCATTCTTCTGTCAATGGACTTCTTCCTTTCATACAAAAG..............................................................................................................................................................................................................................................................................................................GGATTAGTTGAGAGAGTGGCGGTGATTTTTTCTGGTAGCAACAATGTACCTATCGAGAGATTTGTTTTCAAGATAAATGTAAACCAATCCTATGGTTCAAAGTTGGAGGAAGCTGATCTGGCGTTCTCTCTTAAATCATTTTTGATCAAGCTTCCATTGTCCCAATCGTTAATGAAGGTTCTTCCACCAG..............................................................................................................ATTGCAGGTGGGAGATAACAGCTTACTTCCGCTCTCTCCCGCAGAGTGGTACCAGCAAAGATGCCGAAATTTGGGTCCCAACAGATACTCAGCAGTGGCAGCAAGCACCTCTTATAACTCCTATTAAGTCCATGAGTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E739427" ref_strand="+" ref_description="SGN-E739427 [LC17BF09]">
      <seq>cgctgcttaaaagttgctggcttcaggttatgatagtcttttaagcagctcaaaggcttgaagccagcaacttttgtctttcccagtgatgaggaagtggttggaagcacttgtcttttcgttgctctccaaagatcaatgttgcggcttaagcgttttgcagttgctttctatgggaatttaagtcatcctcaattggttgctcttgttgcacaagatgaagtaatgactcctagtggtcaagtcgagccaccagggatgcatctgatttatcttccatattctgatgatatcagacatgttgaagagcttcatactgatcctaattccgtgcctcatgccactgatgaccagataaagaaggcctccgctttagtgagacgtattgacctcaaagatttttctgtgtggcaatttgctaatcctgcattgcagagacattatgcagtattacaagctcttgcacttgatgaagatgagatgcctgaaattaaagatgagactcttccagatgaagaaggaatggctaggcctggtattgtcaaagcattggaggaattcaagctctctgtttatggagagagctataaggacgaggactcaaacattgaaggaaaagctgagccaactaggaaacggaaagcaaatgctataaaagaatatggtaattatgagtgggctgaccttgcagataatgggaagttgaaggacatgacagttgtagaattgaagtattatctaggtgcacatgaccttccagtcagtggaaagaaagaagccttgattagtaggatcttaactcacatgggcaagtgagttgtgactttcagatctttggcggtctgccattagtttgtacagaatggttctttttgctgcagcctggtgagtagttagtttttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="-" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="48662" stop="43820"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48361" g_stop="48326" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="93" r_length="36" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48325" i_stop="47839" i_length="487">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47838" g_stop="47777" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="155" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47776" i_stop="47192" i_length="585">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.739" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47191" g_stop="47131" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="216" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47130" i_stop="46390" i_length="741">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46389" g_stop="46297" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="309" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="46296" i_stop="46205" i_length="92">
            <donor d_prob="0.709" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="46204" g_stop="46087" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="427" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="46086" i_stop="44984" i_length="1103">
            <donor d_prob="0.878" d_score="1.00"/>
            <acceptor a_prob="0.913" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="44983" g_stop="44881" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="530" r_length="103" r_score="0.990"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="44880" i_stop="44747" i_length="134">
            <donor d_prob="0.926" d_score="0.98"/>
            <acceptor a_prob="0.837" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="44746" g_stop="44575" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="702" r_length="172" r_score="0.988"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="44574" i_stop="44322" i_length="253">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="44321" g_stop="44120" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="703" r_stop="904" r_length="202" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="-" ref_id="SGN-E739427" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>847</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739427" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48361" e_stop="48326"/>
          <exon e_start="47838" e_stop="47777"/>
          <exon e_start="47191" e_stop="47131"/>
          <exon e_start="46389" e_stop="46297"/>
          <exon e_start="46204" e_stop="46087"/>
          <exon e_start="44983" e_stop="44881"/>
          <exon e_start="44746" e_stop="44575"/>
          <exon e_start="44321" e_stop="44120"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAAGCCAGCAACTTTTGTCTTTCCCAGTGATGAGGTGTTCTTTTCAATAATCCACCTTCATTTTTCTTCTTTTGGTTCAGTATATGGTCATTGTTAAAGGTTATTCACAGTCCTCAGGCGTCTTCATTCTCGACAAGCTAAGCTGGTTAATATTGTCCAAATGCTACTAGTTAGATTTTTTTATTTGAAGCACTCTAAAATATGTTAGTTTTGTCAATTTATATTGCTGATAGATGGGATATTGGATTGGATCATTTCACCTTTTAAAACTACATCTAGAAATGAGTCTGATGAGTCAACTTGATTTGTGCTTTATTTCTACGTTTCTATATCTATCTTCATGTCCTTATGGCATAGTTAATCAAATTCAGCTTTTAACAGCTTGGACTATGCAGTACCAATGATTTCTTACCATACAACTTTACCACTTCGATCCATCATTTGGGAATACTTTTCACTATCTCCTATAATATGTCATTTCCATGATGATCAATTCTATTGCTTCTCCTTGGTACTTGCAGGAAGTGGTTGGAAGCACTTGTCTTTTCGTTGCTCTCCAAAGATCAATGTTGCGGCTTAAGCGGTTAGTATGCCTGAAAATTTTGTTAATTTAATTAGCAAACAGGGTTAAGTTAATAGTAGGGAGTGATAAGTTCAGTCTTGCATGTTTTGACCTGTTATCTCTATTTAGAAGTGGCTGGATGCTCTTTTTCTTAGGTAAAAGTCCATCCGTTCTTCATTCAACTGGGTTTTCATTTTCATTTTAGTCACTGTTTATACTGTTTTGTCTATTTAAATACGAAAAATGTGTCTCTAGTCAGCCTTTTGTCTAAAGTAATTCATGCAACTGTTTTGTTGTCTTTCTCTCCTTCTCATTTCACCTTATCTTAGGTAGTTTGAACTACTCTATCAGCATCCCACTGTGCTAAATCTTGTTTGAAGTTGTATATAAGCAGTCTGCAGTAGTGCTAGCTAGCTTTGATCTCAACTATTACGGAAGTGGCACATGTTGCTGACTTACGGACATTTTTCTGCTTGCCTTCTCGCATTAAGATTAGTTTGCAAATGTTTATTTTTGCTCGACTGTAGAAATAAGTTAATAATCTCTCTGTTGCTGTGCTTGCTGAGTGTGTTGCTGTTTTGTGTTTGACTTTAAGTATCATCACAGTTTTGCAGTTGCTTTCTATGGGAATTTAAGTCATCCTCAATTGGTTGCTCTTGTTGCACAAGTAAGACATTGTTTTTCCTCTCCAAATCCTTTCGGATTATATATAGACTAAATCTACCTATTAATGCACCTGTGATTGCGGGGTCAGTGATTGCCAACACCTCTGACATGCACTGAAGGATGTATTGAGTGTGATGGTGAGACAACAATCCAAGTATATAATTTGATACAATCACTAAGAATAGTCTTAACGACTTTATTTGTTCGTGAAATTCAAAAGAGATCTACTAAGAAGTATTAAGTCGGACATTCTTAATCCTTGTGCGATCATAATTTCAGGATTCCAAGAATTAAAAAAACTTCAATTGCTTTTTTGTGTGTTTCACTAATTTTCATGAGAGTTTCTTCTCTCCTTTTTAACAAAATTCTCTTTTCAAATGGCATTGGAGCCTCTGCGATTTCGATAGGGACTTAAGTAGCTTATGCCTACTCGCTTCTCATGCGAGGTGAAAGTTTTCCCTTTTTCGTTTCAGAGTTCAATCACCTCTTTCCTGATCACTTTTTGCAACCATGCATTTTATTTTTTTTGGGGGGGGGGTGTTGGTAACACCAGCACTCTTTTTGATAATTTTTTTCAAGTCCAGCATACCTTGTATAACTTTTTAAGTGCATTCAAACTTCTCAGTGGAAATTGGGTGGAGGGAGTAGCCTTTTTTGGTGTATTCTTTTCTGTGTGAAGTTGTGAATAATGACAAACTTTTACCTGTTGGTCTTCCATTTTCATGGTTTTTGATAAATGCAGGATGAAGTAATGACTCCTAGTGGTCAAGTCGAGCCACCAGGGATGCATCTGATTTATCTTCCATATTCTGATGATATCAGACATGTTGAAGAGGCAGGCAGATTATGTCTTAGTCACAATTGATTTCTTTTTCTATTTTGAAAAATCATGAAGTCTATATCTAACGAATGTGGTTTTACTTGCAGCTTCATACTGATCCTAATTCCGTGCCTCATGCCACTGATGACCAGATAAAGAAGGCCTCCGCTTTAGTGAGACGTATTGACCTCAAAGATTTTTCTGTGTGGCAATTTGCTAATCCTGGTAAGTAATCATAGCTTGGGAAAGGAGATCATTGTTTTGTGCTGCCACTATATATGCAGTTCCGATTCCAAAATGAAGCTTTTTTTTGGTAAGCAAATTATATTATTTACCAAAGGTGGTAGTGTTACATCTCAAGAAGATAAAAACAAACAGAAGAAACCTACTACAAAGAGCCTGCACTGGCTAGTATTTATCCCATGCCAGATGCACCCTGCAGCTCACGTAGACCTCCTAACACCTCGTCCCCAAACAAGCAACATCACTCCGGGTAACAATCCAGTTTAGTCATGTAAGATACTAACTCAGGCACCATTGTAGCTCTATGGAAATCCTCCTGGACAATCTGCCTAATGATAACATGTTGTAGCCTTGTAGATTGCTGAAAAATTCTAAAATTCCTTTCCTACCACACTTGGAACACTGCAGCAGCTAACATCATCTTATAAACACCTGCACCTTTGCTTTTCCCTTTGCAATACCTCTGCGCCCATTGCACTTCATCCTTCCATCCTTGGTTCAATCTTGAGATGCCTTGCCACTGTAATAGCCTTTTCCATATACTACCAGTTACTGGGCAACTAAAGAATAGGTGTTGAATGGGCTGATAATTTACGAGGTGAGATATAAGCCTTTCTGGAGCTTGATGTTACCGTTGGGTTGGACTAACTGATCCATCTCTTTGTTGATCAAATGAAAAGTAATAAGTTCAATTATAGGGTGGACATCCAAAAGAAGCAAAGTTTTTGATGTAATTTGTTAAATATTTCCAGGTAGTTAAAATGTAAATTGCTGAATCTACTTATTAACTTCAAAAAGGGACTTTCAAACACAAGTCTTGCAAAGGTGTTTAATTTATGTTCCAGTGCTTCATATCTTAAAGCAATTAAATGATGCAAAGCAAAGGGTCATCGCTTCATACGTGAAGTCATGCACTTGAAAAGAATTTTCGCTTCAAACAATGACTTGCAGAGTTATTTCATTGGACACCCTTCCAATTGACGTGCACTCATAATTTTTACAGAACTGTATGAAGTGGAATGCCCCTTATATATAGAAGTGGAGTACCCTTTCCATTTGTATTCTTACAAGATTGTTTCTTGCAGCATTGCAGAGACATTATGCAGTATTACAAGCTCTTGCACTTGATGAAGATGAGATGCCTGAAATTAAAGACGAGACTCTTCCAGATGAAGAAGGAATGGCTAGGTAGTGATGAATTTCCACCATCTTAGGTCCCTTTAGTCTGTGGTTTTGGTCCTTTTTAGTCTTCAACTTGCCTCTTATGTTTAGAAAATTTGTTATTCTGAATTTCCTTTGCTTGTATCTTGTTTGGGTGCAAGGCCTGGTATTGTCAAAGCATTGGAGGAATTCAAGCTCTCTGTTTATGGAGAGAGCTATAAGGATGAAGACTCAAACATTGAAGGAAAAGCTGAGCCAACTAGGAAACGGAAAGCAAATGCTATAAAAGAATATGGTAATTATGAGTGGGCTGACCTTGCAGATAATGGGAAGGTAACATTGCCAAGCTTATGATGTTGTGCTATATATATGTTGCCTCAGTTCTGGGCTTTATAACAGATCCAAAATGTAATCAATCTATAATATATGAGGTGATGTGGTTTGGGTCAGATAAATTTGTTGGAACAATTAGTGCTTCAAGTGAATGAGAAGCTTTTAGTGAGATGGCAAGAAGAATACTTTCATAAAATTTCATTTGATTTCTTATTATATATGTATTTCACTTCTTTTTGTTGCGATTTTGCAGTTGAAGGACATGACAGTTGTAGAATTGAAGTATTATCTAGGTGCACATGACCTTCCAGTCAGTGGAAAGAAAGAAGCCTTGATTAGTAGGATCTTAACTCACATGGGCAAGTGAGTTGTGACTTTCAGATCTTTGGCGGTCTGCCATTAGTTTGTACAGAATGGTTCTTTTTGCTGCAGCCTGTTGAGTAGTTAGTTTTTGT</genome_strand>
        <mrna_strand>TTGAAGCCAGCAACTTTTGTCTTTCCCAGTGATGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGGTTGGAAGCACTTGTCTTTTCGTTGCTCTCCAAAGATCAATGTTGCGGCTTAAGCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGCAGTTGCTTTCTATGGGAATTTAAGTCATCCTCAATTGGTTGCTCTTGTTGCACAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAAGTAATGACTCCTAGTGGTCAAGTCGAGCCACCAGGGATGCATCTGATTTATCTTCCATATTCTGATGATATCAGACATGTTGAAGAG............................................................................................CTTCATACTGATCCTAATTCCGTGCCTCATGCCACTGATGACCAGATAAAGAAGGCCTCCGCTTTAGTGAGACGTATTGACCTCAAAGATTTTTCTGTGTGGCAATTTGCTAATCCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTGCAGAGACATTATGCAGTATTACAAGCTCTTGCACTTGATGAAGATGAGATGCCTGAAATTAAAGATGAGACTCTTCCAGATGAAGAAGGAATGGCTAG......................................................................................................................................GCCTGGTATTGTCAAAGCATTGGAGGAATTCAAGCTCTCTGTTTATGGAGAGAGCTATAAGGACGAGGACTCAAACATTGAAGGAAAAGCTGAGCCAACTAGGAAACGGAAAGCAAATGCTATAAAAGAATATGGTAATTATGAGTGGGCTGACCTTGCAGATAATGGGAAG.............................................................................................................................................................................................................................................................TTGAAGGACATGACAGTTGTAGAATTGAAGTATTATCTAGGTGCACATGACCTTCCAGTCAGTGGAAAGAAAGAAGCCTTGATTAGTAGGATCTTAACTCACATGGGCAAGTGAGTTGTGACTTTCAGATCTTTGGCGGTCTGCCATTAGTTTGTACAGAATGGTTCTTTTTGCTGCAGCCTGGTGAGTAGTTAGTTTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E737315" ref_strand="+" ref_description="SGN-E737315 [LC09BA12]">
      <seq>gctgcttaaaagttgctggcttcaggttatgatagtcttttaagcagctcaaaggcttgaagccagcaacttttgtctttcccagtgatgaggaagtggttggaagcacttgtcttttcgttgctctccaaagatcaatgttgcggcttaagcgttttgcagttgctttctatgggaatttaagtcatcctcaattggttgctcttgttgcacaagatgaagtaatgactcctagtggtcaagtcgagccaccagggatgcatctgatttatcttccatattctgatgatatcagacatgttgaagagcttcatactgatcctaattccgtgcctcatgccactgatgaccagataaagaaggcctccgctttagtgagacgtattgacctcaaagatttttctgtgtggcaatttgctaatcctgcattgcagagacattatgcagtattacaagctcttgcacttgatgaagatgagatgcctgaaattaaagatgagactcttccagatgaagaaggaatggctaggcctggtattgtcaaagcattggaggaattcaagctctctgtttatggagagagctataaggacgaggactcaaacattgaaggaaaagctgagccaactaggaaacggaaagcaaatgctataaaagaatatggtaattatgagtgggctgaccttgcagataatgggaagttgaaggacatgacagttgtagaattgaagtattatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="-" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="48662" stop="43984"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48361" g_stop="48326" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="92" r_length="36" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48325" i_stop="47839" i_length="487">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47838" g_stop="47777" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="154" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47776" i_stop="47192" i_length="585">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.739" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47191" g_stop="47131" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="215" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47130" i_stop="46390" i_length="741">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46389" g_stop="46297" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="308" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="46296" i_stop="46205" i_length="92">
            <donor d_prob="0.709" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="46204" g_stop="46087" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="426" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="46086" i_stop="44984" i_length="1103">
            <donor d_prob="0.878" d_score="1.00"/>
            <acceptor a_prob="0.913" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="44983" g_stop="44881" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="529" r_length="103" r_score="0.990"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="44880" i_stop="44747" i_length="134">
            <donor d_prob="0.926" d_score="0.98"/>
            <acceptor a_prob="0.837" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="44746" g_stop="44575" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="701" r_length="172" r_score="0.988"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="44574" i_stop="44322" i_length="253">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="44321" g_stop="44284" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="702" r_stop="739" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="-" ref_id="SGN-E737315" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="0.924" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E737315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48361" e_stop="48326"/>
          <exon e_start="47838" e_stop="47777"/>
          <exon e_start="47191" e_stop="47131"/>
          <exon e_start="46389" e_stop="46297"/>
          <exon e_start="46204" e_stop="46087"/>
          <exon e_start="44983" e_stop="44881"/>
          <exon e_start="44746" e_stop="44575"/>
          <exon e_start="44321" e_stop="44284"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAAGCCAGCAACTTTTGTCTTTCCCAGTGATGAGGTGTTCTTTTCAATAATCCACCTTCATTTTTCTTCTTTTGGTTCAGTATATGGTCATTGTTAAAGGTTATTCACAGTCCTCAGGCGTCTTCATTCTCGACAAGCTAAGCTGGTTAATATTGTCCAAATGCTACTAGTTAGATTTTTTTATTTGAAGCACTCTAAAATATGTTAGTTTTGTCAATTTATATTGCTGATAGATGGGATATTGGATTGGATCATTTCACCTTTTAAAACTACATCTAGAAATGAGTCTGATGAGTCAACTTGATTTGTGCTTTATTTCTACGTTTCTATATCTATCTTCATGTCCTTATGGCATAGTTAATCAAATTCAGCTTTTAACAGCTTGGACTATGCAGTACCAATGATTTCTTACCATACAACTTTACCACTTCGATCCATCATTTGGGAATACTTTTCACTATCTCCTATAATATGTCATTTCCATGATGATCAATTCTATTGCTTCTCCTTGGTACTTGCAGGAAGTGGTTGGAAGCACTTGTCTTTTCGTTGCTCTCCAAAGATCAATGTTGCGGCTTAAGCGGTTAGTATGCCTGAAAATTTTGTTAATTTAATTAGCAAACAGGGTTAAGTTAATAGTAGGGAGTGATAAGTTCAGTCTTGCATGTTTTGACCTGTTATCTCTATTTAGAAGTGGCTGGATGCTCTTTTTCTTAGGTAAAAGTCCATCCGTTCTTCATTCAACTGGGTTTTCATTTTCATTTTAGTCACTGTTTATACTGTTTTGTCTATTTAAATACGAAAAATGTGTCTCTAGTCAGCCTTTTGTCTAAAGTAATTCATGCAACTGTTTTGTTGTCTTTCTCTCCTTCTCATTTCACCTTATCTTAGGTAGTTTGAACTACTCTATCAGCATCCCACTGTGCTAAATCTTGTTTGAAGTTGTATATAAGCAGTCTGCAGTAGTGCTAGCTAGCTTTGATCTCAACTATTACGGAAGTGGCACATGTTGCTGACTTACGGACATTTTTCTGCTTGCCTTCTCGCATTAAGATTAGTTTGCAAATGTTTATTTTTGCTCGACTGTAGAAATAAGTTAATAATCTCTCTGTTGCTGTGCTTGCTGAGTGTGTTGCTGTTTTGTGTTTGACTTTAAGTATCATCACAGTTTTGCAGTTGCTTTCTATGGGAATTTAAGTCATCCTCAATTGGTTGCTCTTGTTGCACAAGTAAGACATTGTTTTTCCTCTCCAAATCCTTTCGGATTATATATAGACTAAATCTACCTATTAATGCACCTGTGATTGCGGGGTCAGTGATTGCCAACACCTCTGACATGCACTGAAGGATGTATTGAGTGTGATGGTGAGACAACAATCCAAGTATATAATTTGATACAATCACTAAGAATAGTCTTAACGACTTTATTTGTTCGTGAAATTCAAAAGAGATCTACTAAGAAGTATTAAGTCGGACATTCTTAATCCTTGTGCGATCATAATTTCAGGATTCCAAGAATTAAAAAAACTTCAATTGCTTTTTTGTGTGTTTCACTAATTTTCATGAGAGTTTCTTCTCTCCTTTTTAACAAAATTCTCTTTTCAAATGGCATTGGAGCCTCTGCGATTTCGATAGGGACTTAAGTAGCTTATGCCTACTCGCTTCTCATGCGAGGTGAAAGTTTTCCCTTTTTCGTTTCAGAGTTCAATCACCTCTTTCCTGATCACTTTTTGCAACCATGCATTTTATTTTTTTTGGGGGGGGGGTGTTGGTAACACCAGCACTCTTTTTGATAATTTTTTTCAAGTCCAGCATACCTTGTATAACTTTTTAAGTGCATTCAAACTTCTCAGTGGAAATTGGGTGGAGGGAGTAGCCTTTTTTGGTGTATTCTTTTCTGTGTGAAGTTGTGAATAATGACAAACTTTTACCTGTTGGTCTTCCATTTTCATGGTTTTTGATAAATGCAGGATGAAGTAATGACTCCTAGTGGTCAAGTCGAGCCACCAGGGATGCATCTGATTTATCTTCCATATTCTGATGATATCAGACATGTTGAAGAGGCAGGCAGATTATGTCTTAGTCACAATTGATTTCTTTTTCTATTTTGAAAAATCATGAAGTCTATATCTAACGAATGTGGTTTTACTTGCAGCTTCATACTGATCCTAATTCCGTGCCTCATGCCACTGATGACCAGATAAAGAAGGCCTCCGCTTTAGTGAGACGTATTGACCTCAAAGATTTTTCTGTGTGGCAATTTGCTAATCCTGGTAAGTAATCATAGCTTGGGAAAGGAGATCATTGTTTTGTGCTGCCACTATATATGCAGTTCCGATTCCAAAATGAAGCTTTTTTTTGGTAAGCAAATTATATTATTTACCAAAGGTGGTAGTGTTACATCTCAAGAAGATAAAAACAAACAGAAGAAACCTACTACAAAGAGCCTGCACTGGCTAGTATTTATCCCATGCCAGATGCACCCTGCAGCTCACGTAGACCTCCTAACACCTCGTCCCCAAACAAGCAACATCACTCCGGGTAACAATCCAGTTTAGTCATGTAAGATACTAACTCAGGCACCATTGTAGCTCTATGGAAATCCTCCTGGACAATCTGCCTAATGATAACATGTTGTAGCCTTGTAGATTGCTGAAAAATTCTAAAATTCCTTTCCTACCACACTTGGAACACTGCAGCAGCTAACATCATCTTATAAACACCTGCACCTTTGCTTTTCCCTTTGCAATACCTCTGCGCCCATTGCACTTCATCCTTCCATCCTTGGTTCAATCTTGAGATGCCTTGCCACTGTAATAGCCTTTTCCATATACTACCAGTTACTGGGCAACTAAAGAATAGGTGTTGAATGGGCTGATAATTTACGAGGTGAGATATAAGCCTTTCTGGAGCTTGATGTTACCGTTGGGTTGGACTAACTGATCCATCTCTTTGTTGATCAAATGAAAAGTAATAAGTTCAATTATAGGGTGGACATCCAAAAGAAGCAAAGTTTTTGATGTAATTTGTTAAATATTTCCAGGTAGTTAAAATGTAAATTGCTGAATCTACTTATTAACTTCAAAAAGGGACTTTCAAACACAAGTCTTGCAAAGGTGTTTAATTTATGTTCCAGTGCTTCATATCTTAAAGCAATTAAATGATGCAAAGCAAAGGGTCATCGCTTCATACGTGAAGTCATGCACTTGAAAAGAATTTTCGCTTCAAACAATGACTTGCAGAGTTATTTCATTGGACACCCTTCCAATTGACGTGCACTCATAATTTTTACAGAACTGTATGAAGTGGAATGCCCCTTATATATAGAAGTGGAGTACCCTTTCCATTTGTATTCTTACAAGATTGTTTCTTGCAGCATTGCAGAGACATTATGCAGTATTACAAGCTCTTGCACTTGATGAAGATGAGATGCCTGAAATTAAAGACGAGACTCTTCCAGATGAAGAAGGAATGGCTAGGTAGTGATGAATTTCCACCATCTTAGGTCCCTTTAGTCTGTGGTTTTGGTCCTTTTTAGTCTTCAACTTGCCTCTTATGTTTAGAAAATTTGTTATTCTGAATTTCCTTTGCTTGTATCTTGTTTGGGTGCAAGGCCTGGTATTGTCAAAGCATTGGAGGAATTCAAGCTCTCTGTTTATGGAGAGAGCTATAAGGATGAAGACTCAAACATTGAAGGAAAAGCTGAGCCAACTAGGAAACGGAAAGCAAATGCTATAAAAGAATATGGTAATTATGAGTGGGCTGACCTTGCAGATAATGGGAAGGTAACATTGCCAAGCTTATGATGTTGTGCTATATATATGTTGCCTCAGTTCTGGGCTTTATAACAGATCCAAAATGTAATCAATCTATAATATATGAGGTGATGTGGTTTGGGTCAGATAAATTTGTTGGAACAATTAGTGCTTCAAGTGAATGAGAAGCTTTTAGTGAGATGGCAAGAAGAATACTTTCATAAAATTTCATTTGATTTCTTATTATATATGTATTTCACTTCTTTTTGTTGCGATTTTGCAGTTGAAGGACATGACAGTTGTAGAATTGAAGTATTATCT</genome_strand>
        <mrna_strand>TTGAAGCCAGCAACTTTTGTCTTTCCCAGTGATGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGGTTGGAAGCACTTGTCTTTTCGTTGCTCTCCAAAGATCAATGTTGCGGCTTAAGCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGCAGTTGCTTTCTATGGGAATTTAAGTCATCCTCAATTGGTTGCTCTTGTTGCACAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAAGTAATGACTCCTAGTGGTCAAGTCGAGCCACCAGGGATGCATCTGATTTATCTTCCATATTCTGATGATATCAGACATGTTGAAGAG............................................................................................CTTCATACTGATCCTAATTCCGTGCCTCATGCCACTGATGACCAGATAAAGAAGGCCTCCGCTTTAGTGAGACGTATTGACCTCAAAGATTTTTCTGTGTGGCAATTTGCTAATCCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTGCAGAGACATTATGCAGTATTACAAGCTCTTGCACTTGATGAAGATGAGATGCCTGAAATTAAAGATGAGACTCTTCCAGATGAAGAAGGAATGGCTAG......................................................................................................................................GCCTGGTATTGTCAAAGCATTGGAGGAATTCAAGCTCTCTGTTTATGGAGAGAGCTATAAGGACGAGGACTCAAACATTGAAGGAAAAGCTGAGCCAACTAGGAAACGGAAAGCAAATGCTATAAAAGAATATGGTAATTATGAGTGGGCTGACCTTGCAGATAATGGGAAG.............................................................................................................................................................................................................................................................TTGAAGGACATGACAGTTGTAGAATTGAAGTATTATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E344253" ref_strand="+" ref_description="SGN-E344253 [cTOF-16-E5]">
      <seq>aagatctgaacgaccagcttaggaaacgcatgtttaagaagcgcagagttcgaagacttcgacttgtaatttttaatggattatctatcgaacttaacacctatgctttgatccgtccaactaatccagggacaattacttggcttgattcgatgactaatcttcctttgaagactgagagaaccttcatatgtgctgatactggtgctatagttcaggagcctctaaaacgctttcagtcttacaaaaatgagaatgtcatcttttctgcggatgagctttcagaagtcaaaagagtttcaactggacatcttcgtctgttgggcttcaagcctttgagctgcttaaaagactatcataacctgaagccagcaacttttgtctttcccagtgatgaggaagtggttggaagcacttgtcttttcgttgctctccaaagatcaatgttgcggcttaagcgttttgcagttgctttctatgggaatttaagtcatcctcaattggttgctcttgttgcacaagatgaagtaatgactcctagtggtcaagtcgagccaccagggatgcatctgatttatcttccatattctgatgatatcagacatgttgaagagcttcatactgatcctaattccgtgcctcatgccactgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="-" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="53448" stop="45865"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53148" g_stop="53020" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53019" i_stop="52931" i_length="89">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.806" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52930" g_stop="52887" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="173" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52886" i_stop="49919" i_length="2968">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49918" g_stop="49842" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="250" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49841" i_stop="48474" i_length="1368">
            <donor d_prob="0.612" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48473" g_stop="48326" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="398" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48325" i_stop="47839" i_length="487">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47838" g_stop="47777" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="460" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47776" i_stop="47192" i_length="585">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.739" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47191" g_stop="47131" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="521" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="47130" i_stop="46390" i_length="741">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="46389" g_stop="46297" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="614" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="46296" i_stop="46205" i_length="92">
            <donor d_prob="0.709" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="46204" g_stop="46165" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="615" r_stop="654" r_length="40" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="-" ref_id="SGN-E344253" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344253" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53148" e_stop="53020"/>
          <exon e_start="52930" e_stop="52887"/>
          <exon e_start="49918" e_stop="49842"/>
          <exon e_start="48473" e_stop="48326"/>
          <exon e_start="47838" e_stop="47777"/>
          <exon e_start="47191" e_stop="47131"/>
          <exon e_start="46389" e_stop="46297"/>
          <exon e_start="46204" e_stop="46165"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATCTGAACGACCAGCTTAGGAAACGCATGTTTAAGAAGCGCAGAGTTCGAAGACTTCGACTTGTAATTTTTAATGGATTATCTATCGAACTTAACACCTATGCTTTGATCCGTCCAACTAATCCAGGTCTGCCTTTTTTATCCCATCTTTTATTAGGTAATGATTAACGTGAGGCGACTATAAGTAAACGCTATGCCCTTATTATTTTTCTGTAGGGACAATTACTTGGCTTGATTCGATGACTAATCTTCCTTTGAAGGTACTTTTTAGCTTCGTCGTCATGCTTTGTTTTAACCTTGTTTCTTCTGTTCTTTGGAAGTTCCTTATCAATTTTGTTGTGTTTATGTATGTCTCTTGTTTAGTGGGAGGGGGATTAAGAGAATTATTGTTCATAACTAACCTTTGCACTTCTTGGGGTTTTGATTTTTATTAGTTCTGATTGTAATGGATTTGGAGCAATCTTTTGTTTATTCGTTGAGGGTTCATTGTTGTTTTCTTTCTTACGGTCATTTCGTCCAAAGAAAAATCTCATTTGACCATCTATCTTTCAATATATTTGTCAGCCTTTGTAGCTATACATTTTTGTGAAAGAGCCAGTATAAGTTTTTCATTTCACTTCTCTGTACATCCCAATTATACAACAATTTTTTTGGTTTTCCTTGCCGACCAGTCATGTGAAGACACTCTTAGGTCAATGAATATCCTAAGGAGCCAATGAATCCGTAGTTAAACAAACAGGGAACCTTGTAAGAAAATTGTCAGGATATTTATCAAAAATGTTGTTATTTACCAAACAAATCCTTCTATAGCATTTTAGGCGCTCGTATTTCTAATACTATAAGTTTTCTTAGTTCACATTCTATCTTGAAAAAATAATATAGAATCCCGTTATATGTTATTTATGCGACTTATGTGATTATAGGGGAATTAAACAGTGTTACCATTGTAATGCATTTATAGTAATGCAAAGTTTTATACCACAAACTAAATAGTGGTTTTTTTTTAAAGAAAGGTGACGTTTACTTCTATATATCTACAGGTATACTACATTAAAGTGTAGTCCCCCTCCAAAAAGTTCTACTTACATCATTCCTAGGATCTTTTAGTTACAGCCAATCAATAACACATCTTCAATAACTCCTATCACTACTGCTTGCACTAAAATAGTATAGTTCTAGGCAGTTCGTCTTTATCTTCTGAATATTGTTCTGAATTCCTAAAAAACATCTTTGATTCCTTTCCCTCCAAATTTCCACCAAATGCAAGCGGGGAAATCCTCCATCTCTTCTCTTTTTTTTCTCCTGCATTTTCATTCATGTTCCAGCATTGTAGGACTTCTATAATTCTCCCTGGCTTTGTCCACTTGATCTTCCTCTTGCGGATGAACATCTGCCATGATTGATCTGTCCATTTGCAGTGTAGAAAGAGAAGGTTGACCGTCTCCACCTGTTTTTCACATAGATAGCATCTAGAACACAGATTAGATTCCTCTTGTTCAAGTTCTCATGTGTCAAGACTGCCTCCTTTATCAAGAGCCATGTGAAGTAGTTCACCTTGTAGGGAATTTCTGTTCTCCAGATCATCCTCCAGGGCCATCCTGTTTGCTGCACCTCAGTAGAACTGAGTTCTCTGTATGCTGATTTTACAGTGAATTCTCCCCCCCTCCTCCCCTTACATAATAGTCCATGTTCCTCTCCTGTCAGATTGGTAGCCATATGCATTGTGTGATGAAATTCTTGTTATGGTTGTCATTTCCTAATCATTTAGGTTCCTTCTTAGAAACAGGTTCCACCCTTGTCCTGTCCATAATTCTGCGATTGTTTTTATTTGTGCTTGGTTCAGGCTATGTAGCACAGTGAAAGCATGTTTGAGTGTCTCCTTTCCACACCAAATGTCATTCCAGAAAGCTACTTTTTCTCCACTGCCCACCTTACAACTTGTTCTCTCCCTGACTTGTTGCCATAGGTTCCTGATAGATCTCCCATACACTACAATTATAAGGGTTGGTCACCACATCTGTCATCCATTTGTTCCTCCATGCCATATTTTTCTATTATTACTTCCTTCCATAGAGATACTTCTGGTGAGACAAATTTCCACAGTCAATTCATCATCAAGCTCTTGTTTTGGGTAATCAGCTTTCTAATCTAAATGTTTTGTTTTATATTGATTACTACACTGAAATTACTATGTATTATACAGGTAATCAAACAAGCTCGTAGAGCTGATGTAGTTCATTGGAGAAGTTATTGTGTCTACTAGGTCTGTTAGATCTAGGACATAAGTTTTACTAAATGAGAAGAGTATTATAGTTGAAACTGAAATTTTTTTGTGAAAGTTAAAGATGTGTTCGAGAATGAATGGAGAAGTATTTTGTGGTCGTTGAAGATTTGAGATTAGAAACCTGTGTTTCACTTGAAATACACCTTTAAACCAATACCTCAATCTTTCACCTAGCGTTCAAATGCTTATATATTTATGGCCGAACATGTTTTTGCAAATACTGATGTGCCGTATTTGTAAATATTGAAATATTATGACAAACCGGCCCTTGGTTTTAGAATGAAATAGTTTCAGCCTAGAGCGGGTTGGACATAGAGGATTGTTATAGCTGGCCCCAATGAGTTTGAGATTGAGGAGGAGTTGATTGGTTTGGTTTTTATGTAGAGTCTAAGCATTTAAATTTGTATAATGTTTGCATAGTAGAAGATAAAAAACAGTTGGGGGCTGTAGGTGAGAGAGGGTATGCTGGGAAACATTTATGTATAACATAGTTGAAATTGGATAGACTGTTATACATAATGGGATTAACTTCGGGGTGGGCTGTATGTTGGGAAGGTGTTACAGGTGGTTGTGGAGCTACATAATGTCTCATATAGGATATTTTTTTTCAACAAAAAGAAGACTCAACTTCGTATAAGGAATTTCTAAACGTCTGAGCTGTTCCATTGCCTTGTATTGTTTTGTTGGACGCTCAAATTCAACACATGTTTCATGCATGGAGCGACAATAAGTTTTTGCCATGTTATTTTAATATATGGTTAGTTATTGAGGAATTTTGTGTCAGCTTGTTTCTGAATCCCACTTACTAGGGAAAGTCGCCATTTCTAAGTTGTCATTTATCATTGAAGTTGGTAGAAAAGTTGATGAAATGTCAGTTCTGGTTTGTGTTGGGATTTGGTATAAAGCAAGTCTTTAACCTCTTCTATGTTCTTCCTTGTTTACAGACTGAGAGAACCTTCATATGTGCTGATACTGGTGCTATAGTTCAGGAGCCTCTAAAACGCTTTCAGTCTTACAAAAAGTCGGTATCTGTTTCTTAAAAGAATGACTCCCTCTTCTTCTACTCTGAATCTAGATTTCTCTCTTCAATTATTCTTATTTTAGATAAATGTGTGTGGCGGCATTTTTCATGTTTCTTCCAAATCTTCTTATTATGTGTGTGTGTGTGTGTGTGCATATATATATATATATATATATTTATTTATTTATTTTAAAAAATATTATTTTTGGACAAATTATCTTCTTATTATATATATTTAACAATTTAATATGAAACTGCAAATTACTTTTTCTAGTGTTTAATAAATTGGGAATTGGAAATCAATTTGTATCGGAGTACCATTCTATGGCCTACAATTATATTTTACTGATGATCATTTTGAGTGCTTTAATTAAAGTTGTCATTATGAATGTTGAAATTAGTCAGTCTAGCTACAATGTGATGTTACAGGTACTGAATTCATGCATGTTAGTTAAACCTTTTATTTTTGAAAATCCTGCACTACCCTTTGAAGAAGTGTAAGTTCTCTTCTCTTTTCTTAATGCTCCATATGTTTTGTTGACTTTTTTGCTTTGTCCTATAAAAGACTGAAGAATATTATGTTATTAATGAAGTGGTGGGAGAACCATGAGGTTTCAGTTTCATTAGAGATAAAATAAACACAAGGTGATATTTCCTCATTTGCCCAAGCCTTGGGGGAATACCTGATAAGAGTACTGGCAGGATGTAGTAGATATTAGATGAAATTAGTCAAGGTGCACACAATCTGACCATATACCACCATCATAAATAGAATGTGCCATATTTCAGAACCCAAAAAATTGTAGGAGACCTTCCCTATTTCACGTTACTCAACCTCCTATATCCTATTTAGAGAGTGTTCCCATATCTTGTCAACAATCAATTTCAGTAAAACTTTTTCACTTCCAACGGGTAGAGTGAATTATTATTTGTTTCTTTGGAAACACTTCAAAATTTAACCTCTAACGATAGCTCGTACTACCAGAAGATAGTAAAAAAGACAAAATCAAAGGAAGAACAATCTCTTTATAGATTATCCATAGAGAAGTCAAAACATTACCAAGCCTCTCCACAGACTATATTAGTATTCAGCTCCTAACAGTGCTCTTTTGTTGCATTTTGTCCAATTTTTTCTGATTAATTCAAGAGAATATGGATAGATTGTAACATGGAACGGGGTGTTAGATCCTCATCATTTATGTATTGAAAAAGATTATGTAGTGAACTTGGATATCCTAGAAGAAATTCACATTTGAGTTTCCTTGATTTGCTAAATTTTGCTTCACTGAATTACCAAATGACCAGCCCAACTCAACTCTGGTAGACTTATTCAACCGTTCACTGATGTCTTGTGCCTTTTTGTTTCAGTGAGAATGTCATCTTTTCTGCGGATGAGCTTTCAGAAGTCAAAAGAGTTTCAACTGGACATCTTCGTCTGTTGGGCTTCAAGCCTTTGAGCTGCTTAAAAGACTATCATAACCTGAAGCCAGCAACTTTTGTCTTTCCCAGTGATGAGGTGTTCTTTTCAATAATCCACCTTCATTTTTCTTCTTTTGGTTCAGTATATGGTCATTGTTAAAGGTTATTCACAGTCCTCAGGCGTCTTCATTCTCGACAAGCTAAGCTGGTTAATATTGTCCAAATGCTACTAGTTAGATTTTTTTATTTGAAGCACTCTAAAATATGTTAGTTTTGTCAATTTATATTGCTGATAGATGGGATATTGGATTGGATCATTTCACCTTTTAAAACTACATCTAGAAATGAGTCTGATGAGTCAACTTGATTTGTGCTTTATTTCTACGTTTCTATATCTATCTTCATGTCCTTATGGCATAGTTAATCAAATTCAGCTTTTAACAGCTTGGACTATGCAGTACCAATGATTTCTTACCATACAACTTTACCACTTCGATCCATCATTTGGGAATACTTTTCACTATCTCCTATAATATGTCATTTCCATGATGATCAATTCTATTGCTTCTCCTTGGTACTTGCAGGAAGTGGTTGGAAGCACTTGTCTTTTCGTTGCTCTCCAAAGATCAATGTTGCGGCTTAAGCGGTTAGTATGCCTGAAAATTTTGTTAATTTAATTAGCAAACAGGGTTAAGTTAATAGTAGGGAGTGATAAGTTCAGTCTTGCATGTTTTGACCTGTTATCTCTATTTAGAAGTGGCTGGATGCTCTTTTTCTTAGGTAAAAGTCCATCCGTTCTTCATTCAACTGGGTTTTCATTTTCATTTTAGTCACTGTTTATACTGTTTTGTCTATTTAAATACGAAAAATGTGTCTCTAGTCAGCCTTTTGTCTAAAGTAATTCATGCAACTGTTTTGTTGTCTTTCTCTCCTTCTCATTTCACCTTATCTTAGGTAGTTTGAACTACTCTATCAGCATCCCACTGTGCTAAATCTTGTTTGAAGTTGTATATAAGCAGTCTGCAGTAGTGCTAGCTAGCTTTGATCTCAACTATTACGGAAGTGGCACATGTTGCTGACTTACGGACATTTTTCTGCTTGCCTTCTCGCATTAAGATTAGTTTGCAAATGTTTATTTTTGCTCGACTGTAGAAATAAGTTAATAATCTCTCTGTTGCTGTGCTTGCTGAGTGTGTTGCTGTTTTGTGTTTGACTTTAAGTATCATCACAGTTTTGCAGTTGCTTTCTATGGGAATTTAAGTCATCCTCAATTGGTTGCTCTTGTTGCACAAGTAAGACATTGTTTTTCCTCTCCAAATCCTTTCGGATTATATATAGACTAAATCTACCTATTAATGCACCTGTGATTGCGGGGTCAGTGATTGCCAACACCTCTGACATGCACTGAAGGATGTATTGAGTGTGATGGTGAGACAACAATCCAAGTATATAATTTGATACAATCACTAAGAATAGTCTTAACGACTTTATTTGTTCGTGAAATTCAAAAGAGATCTACTAAGAAGTATTAAGTCGGACATTCTTAATCCTTGTGCGATCATAATTTCAGGATTCCAAGAATTAAAAAAACTTCAATTGCTTTTTTGTGTGTTTCACTAATTTTCATGAGAGTTTCTTCTCTCCTTTTTAACAAAATTCTCTTTTCAAATGGCATTGGAGCCTCTGCGATTTCGATAGGGACTTAAGTAGCTTATGCCTACTCGCTTCTCATGCGAGGTGAAAGTTTTCCCTTTTTCGTTTCAGAGTTCAATCACCTCTTTCCTGATCACTTTTTGCAACCATGCATTTTATTTTTTTTGGGGGGGGGGTGTTGGTAACACCAGCACTCTTTTTGATAATTTTTTTCAAGTCCAGCATACCTTGTATAACTTTTTAAGTGCATTCAAACTTCTCAGTGGAAATTGGGTGGAGGGAGTAGCCTTTTTTGGTGTATTCTTTTCTGTGTGAAGTTGTGAATAATGACAAACTTTTACCTGTTGGTCTTCCATTTTCATGGTTTTTGATAAATGCAGGATGAAGTAATGACTCCTAGTGGTCAAGTCGAGCCACCAGGGATGCATCTGATTTATCTTCCATATTCTGATGATATCAGACATGTTGAAGAGGCAGGCAGATTATGTCTTAGTCACAATTGATTTCTTTTTCTATTTTGAAAAATCATGAAGTCTATATCTAACGAATGTGGTTTTACTTGCAGCTTCATACTGATCCTAATTCCGTGCCTCATGCCACTGATG</genome_strand>
        <mrna_strand>AAGATCTGAACGACCAGCTTAGGAAACGCATGTTTAAGAAGCGCAGAGTTCGAAGACTTCGACTTGTAATTTTTAATGGATTATCTATCGAACTTAACACCTATGCTTTGATCCGTCCAACTAATCCAG.........................................................................................GGACAATTACTTGGCTTGATTCGATGACTAATCTTCCTTTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGAGAGAACCTTCATATGTGCTGATACTGGTGCTATAGTTCAGGAGCCTCTAAAACGCTTTCAGTCTTACAAAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGAATGTCATCTTTTCTGCGGATGAGCTTTCAGAAGTCAAAAGAGTTTCAACTGGACATCTTCGTCTGTTGGGCTTCAAGCCTTTGAGCTGCTTAAAAGACTATCATAACCTGAAGCCAGCAACTTTTGTCTTTCCCAGTGATGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGGTTGGAAGCACTTGTCTTTTCGTTGCTCTCCAAAGATCAATGTTGCGGCTTAAGCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGCAGTTGCTTTCTATGGGAATTTAAGTCATCCTCAATTGGTTGCTCTTGTTGCACAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAAGTAATGACTCCTAGTGGTCAAGTCGAGCCACCAGGGATGCATCTGATTTATCTTCCATATTCTGATGATATCAGACATGTTGAAGAG............................................................................................CTTCATACTGATCCTAATTCCGTGCCTCATGCCACTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E315857" ref_strand="+" ref_description="SGN-E315857 [cTOA-26-M15]">
      <seq>tgttcaataaaatcttcgatatgtcaatggacctcgacccagatgaagtcttccgtgatgatgaagatgaccctgaaaatgaattcttcaaggaaagagataatactaaggagttcttggtatatcttgtggatgcttcacctaaaatgttttcctctacttgcccaacggatgatgaaaagattgcaactcattttcaagttgccgtcagctcaattgcacagtctctcagaactcagattattaataggtcttatgatgaagtttctatatgcttctttaacactcggggaaaaaagaacttgcaggacctaagtggcgtttatgtatttaatgtccgagaaagagaggatctggacagaccaacagctaggctaattaaagaatttgatcaaatagaagaaagatttgaaaaagaaataggaagtaagtacggcattgtgcctggctctcgtgacaattctctttacaatgctctttgggttgcacaagcccttctccgtaaaggatctgcaaaaactgctgatgaggacaacgatgcagcgtgccaaagatgctcaagatcttggtattacaattgagcttcttccactaagccggccagatgatgagttcaacgtttcccttttttatgctgatttacttggtctggagggtgatgaccttgctcagttcaaagctctgataggagaaaggtttgaagatctgaacgaccagcttangaaacgcatngttaagaagcgcagagttcgaagacttcgacttgtaatttttaatggattatctatcgaacttaacacctatgctttgatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="-" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="58678" stop="52735"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58378" g_stop="58287" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58286" i_stop="58109" i_length="178">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58108" g_stop="58031" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="170" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58030" i_stop="57017" i_length="1014">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57016" g_stop="56900" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="287" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56899" i_stop="56387" i_length="513">
            <donor d_prob="0.865" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56386" g_stop="56272" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="402" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56271" i_stop="55602" i_length="670">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="55601" g_stop="55496" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="508" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="55495" i_stop="55414" i_length="82">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.424" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="55413" g_stop="55397" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="525" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="55396" i_stop="55323" i_length="74">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="55322" g_stop="55296" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="552" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="55295" i_stop="55123" i_length="173">
            <donor d_prob="0.985" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="55122" g_stop="55039" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="553" r_stop="636" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="55038" i_stop="54966" i_length="73">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="54965" g_stop="54907" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="637" r_stop="695" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="54906" i_stop="53154" i_length="1753">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="53153" g_stop="53035" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="696" r_stop="814" r_length="119" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="-" ref_id="SGN-E315857" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>814</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315857" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58378" e_stop="58287"/>
          <exon e_start="58108" e_stop="58031"/>
          <exon e_start="57016" e_stop="56900"/>
          <exon e_start="56386" e_stop="56272"/>
          <exon e_start="55601" e_stop="55496"/>
          <exon e_start="55413" e_stop="55397"/>
          <exon e_start="55322" e_stop="55296"/>
          <exon e_start="55122" e_stop="55039"/>
          <exon e_start="54965" e_stop="54907"/>
          <exon e_start="53153" e_stop="53035"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTCAATAAAATCTTCGATATGTCAATGGACCTCGACCCAGATGAAGTCTTCCGTGATGATGAAGATGACCCTGAAAATGAATTCTTCAAGGTAAGCCCCCTTAACCTTTTTTGTTTGTTTTTTTAAAAAATTAGTGGAAATGGGTAAAATAAACATGCAGGAAAGAGATTCCTATAAGGAATTATTATGATTTTTCACTTTCTTGTTTGGGCTAAGATTGATTATCAAGCTCTTTGATATTTTTTATTTATCAAAACTAAACATTCAGGAAAGAGATAATACTAAGGAGTTCTTGGTATATCTTGTGGATGCTTCACCTAAAATGTTTTCCTCTACTTGCCCAACGGTTAGTCCTTTTTACCAGCTGTTTTTGTCATTTTGATTGATTTTGGTCATTTCCCGTTACTTCACTTCACTTCAAACTGATGAAGTTGACTTATTTCACTGTTAATTTCTGTTAGACATTAATTTATAATCTGATCGAGTAGAGTTCAAGGTGCCTTATCATTACATAGTAGTAAAGTCAGGTCCATTCATGTTTTGACCTCTTGGTCCATGCTCCAGTAGGACCTGGGCGTAAAGGGGTTGGTTGGTTAGAGTTGGCTTGATTTTCACATTTATTGGGGAATGGACCAGCGGTCTGCTTATATAGACTTGATCAATCACTCCCTCTTGAACTAACTTTTGGCGTTGCAAAGCACCACAATTAGGAGTTGTTTTTTCTGGAAAGGGACATCTCCTTGATGTTGGATTTCTATTGCTTTTTGTTAAATGGTAATGTGCATTTTAAGCTGTATGGTTAACAAACTGTTCATTTGGTAGAGATGAATAGAGAGACTTGGTGATAAGTTATTAAGCTAATAAAGATGGAACTTATATTAGAAGTCTAATTTATTATTATATAGAAAGGCATTTCTTGCAAAGCACATTTTTTTTTGAAACTTGTAATGAATATATATATTACAGTTGCACCATAACAGGGCAAAAGGACTTTACAAAATCCCAACCAAGCTTAAGCTACTGCTTCCCGAGGATCCTATCATATTAATAATCAACTAGTGATTAACCTTCTTAGCATATCTTTCAAAGCACAATTGTTAAAATGGTTCATGCGATATTCCTGGTGTCTTGTTGGTGTAATTTGAACTTGCTAGCTGGAGCTTGGAGGAACGAAAGGCTTAATTGGGCTAACAGCAGGTTCCGAATCAATATTTGGCACCTTGTTTGTGTTACTTTCATTAAAATATTCTAAAGGGATCCTAGGAGGCCTATTTTTCTTAAAAGCATCTTCTCAATTTCCTTTAGCATTTTCACCTTTTGATTGTAAATGTGGAATCCCACTCTTTCTTCATTTTTGCAGGATGATGAAAAGATTGCAACTCATTTTCAAGTTGCCGTCAGCTCAATTGCACAGTCTCTCAGAACTCAGATTATTAATAGGTCTTATGATGAAGTTTCTATATGCTTCTTTAACACTGTAAGCCCTTGTTCTCTAAAAGCTGTGACTTTGACAACCCTTTTATGATAATATCCTTAATCTCTGCTTTTCTCTATCTACAAAATTATTTCAGAGTTATACACCCCCCCCCCCACCCCCCAAAAAAAGAGGAAGAAAACAAAAAAATTAAATCCTGATGAATTAAGCTTTGCTGGACCTTCTTTTCCACCTTGGTTGTAACTTGAGAATTCTGTGTGGATTTGTATTTTTCTTTACTTGTGGGATCGAAGTCTTCCTTGTACTATATAAGTTTGATCAAATACTATTTAGGTGGGCCAGATGTATGTGCTCTTGTTATGCAGCAGACTAGGTGGGTTAAAATCTACTTCTATCAAGGCAAATTTGTTTTTGCTATTTCCCCCCTAATTAACACCTGTTTCAAGTTTTTGTTTGCTATTATTAGTATTTCCAAATTTTGATAAGGAAAAACCAAATTAGAGAATTTGTTTTTAGGTGATAATTTTTTCTTATGTTCTTTTTGTGTGATTTCAGCGGGGAAAAAAGAACTTGCAGGACCTAAGTGGCGTTTATGTATTTAATGTCCGAGAAAGAGAGGATCTGGACAGACCAACAGCTAGGCTAATTAAAGAATTTGATCAAATAGAAGGTAAATCATCATATTGGTCTCTAATTTAATTTTTGGTGGGCGTGTAGTATTGCACCTTTCTCTGTTTTGACTAGATTCAACATTGGTCCTCAATTTGCTTCATCATAGTCACATCATTACAGTCAAGATGCGCATAAGCAAAGTGACTCGTGCCAAGTTGTCGTATCATCATTTCGTCTTTTTTTCCCTTGTAAATATGAGCTGTTTCTCAGACTTAAGAGGAAAACTCATCCATGAAGGTGCTCTTAATTTTTCTTCATTAGCAACTTTAACTCCACACTTAAATTTCAGTTTTTGCAGTTAAACCTTAGTGCTTCCTATACTTTGCACTCTGAGGACTCTGGCTTGTTGTCAATCTTCCTAAAGGAACATAGGCTCTTGAATATATGTAGAAGCAGTCATTTTTACTGACTCTTCACAATCGTCTTATGGAGTACTTTATTAGTCCTTGTTTGACCAGCAAACTGGAAAACCCTAAAATGATGTTATTTCATACTTAATTAATAATTATGCGTAGAATTTTCTGCTATGTCAAAATGGACTAAGAATTCATCCTCTATACAATCAGTTAAATGTCTTGCCTCATCAATGAATAAACTCAAGGAAAAACAGTGTGAACTTTTTTGGTTTTTAGACTTGTACTGCAATTACCTGTTTAATTTGTTTGCAGAAAGATTTGAAAAAGAAATAGGAAGTAAGTACGGCATTGTGCCTGGCTCTCGTGACAATTCTCTTTACAATGCTCTTTGGGTTGCACAAGCCCTTCTCCGTAAAGGGTAAAATTTGCTCATTTCCTTTTTGTTTTCCCCTGAAATGATGTGCACCCTCTTCATTTACTGGTGTTCAAACCATTTCCAGATCTGCAAAAACTGCTGATAAACGTATTCTCTTGCTTACAAATGAAGATGATCCTTTTGGTAATCTCAAAGGTGTCATAAAAGTGGATATGATGAGGACAACGATGCAGCGTGCCAAAGTATAGTATCTTGCCACATATTTATATATTAATATTATAGTCAGTTGAAAACAAGTCCCAAAAGAAAAAGTAAATTTATGTGAAGATAAATAACTCTGAGTGACTGTGATTGTTTTGTGACTTCTTGAACGATTATTACACAATTATTCTACTCATAGCGCTAATGGTTGCAGGATGCTCAAGATCTTGGTATTACAATTGAGCTTCTTCCACTAAGCCGGCCAGATGATGAGTTCAACGTTTCCCTTTTTTATGCTGTATGACCATTATTTATTTTTGAGATCCTTTGTTGCATGTTGTTATTATCTAATTCTAGATCTTTGGCTTCAGGATTTACTTGGTCTGGAGGGTGATGACCTTGCTCAGTTCAAAGCTCTGATAGGAGAAAGGTATACTTTACAAAAGATTCCAACTGTTGAGGATTCCCCTTGGATAGTTGTGAGCTATTCAAGTTTATTAGTATGCTCAGTATATGTATGGCTGTCTCATATGATTGCACTAGTCAGTTGACGAATCTCCATCTAAAAAGTTAACTACTTTCTGAAAGACTTGATACTTGTTGACACAATTTACTGTAGTGTGCTTAAGAATTTGTTACATATATTCATTAAACGAGTCCAAATAATAACTTGTTACATTTAGTCATGCTTTCTTTCAGTGATCGAGATGATTTAGTCATTTGTTGTGTAGATATTTTTCTAAGTGATCTAATGTTCATGAAGATTTAGTATGATGGCAATATGAAATGAGCTTAAATAAAGAAGTGGCTATTCATATAGTCGAAGGCAACTTGCTTGGGACTACGATTTAGTTGTTGTCTATCTAATGTGTAGTTGTTGATCTAATGTTCAAGAAGAACCAAAGCACCTAAGTTTTCTTTCCTACAGCTTATTATAGTAGTGTTAGGAAGTTTCATGCTGGAAGCATGAATGGTTGCACCTATGGTCTCCATTTCTTGAAAGATCATGGAGTGAAGTACTGATTGAAATTCAGATTCTTGTATGTTAATACTCAGAGTTCTCTATCTGTTTCTTAAGATGAATTTGTCCTTATGTCTAGGCATTTATACAATGTCTGGGAGTATGCATGATTTTTTTGGGTAAGTAACACAACGTAGTTATAATACTATTGAAGTTTCTAAAATAATTGCTATACAGACAGATTGCTGAGGGACTGGCAAAGGTATACAAGACAGACAAGATAATTGTCCAATATAATTAGGTACAGACATTATAAGTCTGGTAAATGAAAATAGGAAAATATATTTTCCAATACCATGTGGTTTTTCCGTTGGAGTAGCATTGAACAGACATGAATACAGTGAAAAAGAAATAGAACTTCGACATTAGAGGGCCTGAACATGCAAAAGGACATAAAATAACATCAATTTGTGTATTACACAATTAGAAAAGCGTAATACATTTTTTTTTTAAAAAAAAGGTAGCATAATACCAAAGAGAGAATATAGAATCTCCAGACTATCAGCAAAGCTCCTTTACCTTCCCATTTCAGGCTTCGCTGAAGGAAAGATTCCATTTCTTCAATAGGTGTTGCTTACTGGAAAACTTACTCAGTTATATGAATTATAGTCTTAAACAAGGAGGCTTTTTTTAAGTGGATGAAGATGGAAGGAAGATGATCTATTTTGTGCATTCAGAGAGAAATGAGGGTCCAAAAGGGTGATATGAATGTTCACAAATTTACTTGTTAGATTTATTTATTTATTCTCGATTGATGAAATGAATACTCGAATGTAGAAAACCAAATAACATGAAGGTGAGATGACCAGATCTGGTAATTGGGTTGAATGCAATTTGTGCAGGCATTCAAGATCTGGTGCATGTGTTTTGTACGCTGTTAAACAGCTCAAGCTTGTACATGTCCTTTGTTCATGTAGGAATCTGATTGGTGTGTGTTTTGTGCCCATGTAAATTATGCATTTTTATAACTTCCTGCATTTCCAAAATTTGTGGTTTTATTCTTTATGATTAAGATGGCTAGATAATAGATGTCAGTTTGCAAGGTGTTAAGGTGTTGAATACACTTTGAGCCTGTTAGATTTGATATTCTTTTAGCCTAAATTTACTGAAATTGTATTGGTCCCTGTTTTCATGTGTTCCTTTCGTATGTTTGCTATATCAGGTTTGAAGATCTGAACGACCAGCTTAGGAAACGCATGTTTAAGAAGCGCAGAGTTCGAAGACTTCGACTTGTAATTTTTAATGGATTATCTATCGAACTTAACACCTATGCTTTGATCC</genome_strand>
        <mrna_strand>TGTTCAATAAAATCTTCGATATGTCAATGGACCTCGACCCAGATGAAGTCTTCCGTGATGATGAAGATGACCCTGAAAATGAATTCTTCAAG..................................................................................................................................................................................GAAAGAGATAATACTAAGGAGTTCTTGGTATATCTTGTGGATGCTTCACCTAAAATGTTTTCCTCTACTTGCCCAACG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATGAAAAGATTGCAACTCATTTTCAAGTTGCCGTCAGCTCAATTGCACAGTCTCTCAGAACTCAGATTATTAATAGGTCTTATGATGAAGTTTCTATATGCTTCTTTAACACT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGGGAAAAAAGAACTTGCAGGACCTAAGTGGCGTTTATGTATTTAATGTCCGAGAAAGAGAGGATCTGGACAGACCAACAGCTAGGCTAATTAAAGAATTTGATCAAATAGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGATTTGAAAAAGAAATAGGAAGTAAGTACGGCATTGTGCCTGGCTCTCGTGACAATTCTCTTTACAATGCTCTTTGGGTTGCACAAGCCCTTCTCCGTAAAGG..................................................................................ATCTGCAAAAACTGCTG..........................................................................ATGAGGACAACGATGCAGCGTGCCAAA.............................................................................................................................................................................GATGCTCAAGATCTTGGTATTACAATTGAGCTTCTTCCACTAAGCCGGCCAGATGATGAGTTCAACGTTTCCCTTTTTTATGCT.........................................................................GATTTACTTGGTCTGGAGGGTGATGACCTTGCTCAGTTCAAAGCTCTGATAGGAGAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGAAGATCTGAACGACCAGCTTANGAAACGCATNGTTAAGAAGCGCAGAGTTCGAAGACTTCGACTTGTAATTTTTAATGGATTATCTATCGAACTTAACACCTATGCTTTGATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E342637" ref_strand="+" ref_description="SGN-E342637 [cTOF-7-D13]">
      <seq>cttcgatatgtcaatggacctcgacccagatgaagtcttccgtgatgatgaatatgaccctgaaaatgaattcttcaaggaaagagataatactaaggagttcttggtatatcttgtggatgcttcacctaaaatgttttgctctacttgcccaacggatgatgaaaagattgcaactcattttcaagttgccgtcagctcaattgcacagtctctcagaactcagattattaataggtcttatgatgaagtttctatatgcttctttaacactcggggaaaaaagaacttgcaggacctaagtggcgtttatgtatttaatgtccgagaaagagaggatctggacagaccaacagctaggctaattaaagaatttgatcaaatagaagaaagatttgaaaaagaaataggaagtaagtacggcattgtgcctggctctcgagacaattctctttacaatgctctttgggttgcacaagcccttctccgtaaaggatctgcaaaaactgctgataaacgtattctctagcttacaaatgaagatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="-" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="58665" stop="55064"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58365" g_stop="58287" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58286" i_stop="58109" i_length="178">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58108" g_stop="58031" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="157" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58030" i_stop="57017" i_length="1014">
            <donor d_prob="0.960" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57016" g_stop="56900" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="274" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56899" i_stop="56387" i_length="513">
            <donor d_prob="0.865" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56386" g_stop="56272" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="389" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56271" i_stop="55602" i_length="670">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="55601" g_stop="55496" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="495" r_length="106" r_score="0.991"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="55495" i_stop="55414" i_length="82">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.424" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="55413" g_stop="55364" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="545" r_length="50" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="-" ref_id="SGN-E342637" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342637" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58365" e_stop="58287"/>
          <exon e_start="58108" e_stop="58031"/>
          <exon e_start="57016" e_stop="56900"/>
          <exon e_start="56386" e_stop="56272"/>
          <exon e_start="55601" e_stop="55496"/>
          <exon e_start="55413" e_stop="55364"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCGATATGTCAATGGACCTCGACCCAGATGAAGTCTTCCGTGATGATGAAGATGACCCTGAAAATGAATTCTTCAAGGTAAGCCCCCTTAACCTTTTTTGTTTGTTTTTTTAAAAAATTAGTGGAAATGGGTAAAATAAACATGCAGGAAAGAGATTCCTATAAGGAATTATTATGATTTTTCACTTTCTTGTTTGGGCTAAGATTGATTATCAAGCTCTTTGATATTTTTTATTTATCAAAACTAAACATTCAGGAAAGAGATAATACTAAGGAGTTCTTGGTATATCTTGTGGATGCTTCACCTAAAATGTTTTCCTCTACTTGCCCAACGGTTAGTCCTTTTTACCAGCTGTTTTTGTCATTTTGATTGATTTTGGTCATTTCCCGTTACTTCACTTCACTTCAAACTGATGAAGTTGACTTATTTCACTGTTAATTTCTGTTAGACATTAATTTATAATCTGATCGAGTAGAGTTCAAGGTGCCTTATCATTACATAGTAGTAAAGTCAGGTCCATTCATGTTTTGACCTCTTGGTCCATGCTCCAGTAGGACCTGGGCGTAAAGGGGTTGGTTGGTTAGAGTTGGCTTGATTTTCACATTTATTGGGGAATGGACCAGCGGTCTGCTTATATAGACTTGATCAATCACTCCCTCTTGAACTAACTTTTGGCGTTGCAAAGCACCACAATTAGGAGTTGTTTTTTCTGGAAAGGGACATCTCCTTGATGTTGGATTTCTATTGCTTTTTGTTAAATGGTAATGTGCATTTTAAGCTGTATGGTTAACAAACTGTTCATTTGGTAGAGATGAATAGAGAGACTTGGTGATAAGTTATTAAGCTAATAAAGATGGAACTTATATTAGAAGTCTAATTTATTATTATATAGAAAGGCATTTCTTGCAAAGCACATTTTTTTTTGAAACTTGTAATGAATATATATATTACAGTTGCACCATAACAGGGCAAAAGGACTTTACAAAATCCCAACCAAGCTTAAGCTACTGCTTCCCGAGGATCCTATCATATTAATAATCAACTAGTGATTAACCTTCTTAGCATATCTTTCAAAGCACAATTGTTAAAATGGTTCATGCGATATTCCTGGTGTCTTGTTGGTGTAATTTGAACTTGCTAGCTGGAGCTTGGAGGAACGAAAGGCTTAATTGGGCTAACAGCAGGTTCCGAATCAATATTTGGCACCTTGTTTGTGTTACTTTCATTAAAATATTCTAAAGGGATCCTAGGAGGCCTATTTTTCTTAAAAGCATCTTCTCAATTTCCTTTAGCATTTTCACCTTTTGATTGTAAATGTGGAATCCCACTCTTTCTTCATTTTTGCAGGATGATGAAAAGATTGCAACTCATTTTCAAGTTGCCGTCAGCTCAATTGCACAGTCTCTCAGAACTCAGATTATTAATAGGTCTTATGATGAAGTTTCTATATGCTTCTTTAACACTGTAAGCCCTTGTTCTCTAAAAGCTGTGACTTTGACAACCCTTTTATGATAATATCCTTAATCTCTGCTTTTCTCTATCTACAAAATTATTTCAGAGTTATACACCCCCCCCCCCACCCCCCAAAAAAAGAGGAAGAAAACAAAAAAATTAAATCCTGATGAATTAAGCTTTGCTGGACCTTCTTTTCCACCTTGGTTGTAACTTGAGAATTCTGTGTGGATTTGTATTTTTCTTTACTTGTGGGATCGAAGTCTTCCTTGTACTATATAAGTTTGATCAAATACTATTTAGGTGGGCCAGATGTATGTGCTCTTGTTATGCAGCAGACTAGGTGGGTTAAAATCTACTTCTATCAAGGCAAATTTGTTTTTGCTATTTCCCCCCTAATTAACACCTGTTTCAAGTTTTTGTTTGCTATTATTAGTATTTCCAAATTTTGATAAGGAAAAACCAAATTAGAGAATTTGTTTTTAGGTGATAATTTTTTCTTATGTTCTTTTTGTGTGATTTCAGCGGGGAAAAAAGAACTTGCAGGACCTAAGTGGCGTTTATGTATTTAATGTCCGAGAAAGAGAGGATCTGGACAGACCAACAGCTAGGCTAATTAAAGAATTTGATCAAATAGAAGGTAAATCATCATATTGGTCTCTAATTTAATTTTTGGTGGGCGTGTAGTATTGCACCTTTCTCTGTTTTGACTAGATTCAACATTGGTCCTCAATTTGCTTCATCATAGTCACATCATTACAGTCAAGATGCGCATAAGCAAAGTGACTCGTGCCAAGTTGTCGTATCATCATTTCGTCTTTTTTTCCCTTGTAAATATGAGCTGTTTCTCAGACTTAAGAGGAAAACTCATCCATGAAGGTGCTCTTAATTTTTCTTCATTAGCAACTTTAACTCCACACTTAAATTTCAGTTTTTGCAGTTAAACCTTAGTGCTTCCTATACTTTGCACTCTGAGGACTCTGGCTTGTTGTCAATCTTCCTAAAGGAACATAGGCTCTTGAATATATGTAGAAGCAGTCATTTTTACTGACTCTTCACAATCGTCTTATGGAGTACTTTATTAGTCCTTGTTTGACCAGCAAACTGGAAAACCCTAAAATGATGTTATTTCATACTTAATTAATAATTATGCGTAGAATTTTCTGCTATGTCAAAATGGACTAAGAATTCATCCTCTATACAATCAGTTAAATGTCTTGCCTCATCAATGAATAAACTCAAGGAAAAACAGTGTGAACTTTTTTGGTTTTTAGACTTGTACTGCAATTACCTGTTTAATTTGTTTGCAGAAAGATTTGAAAAAGAAATAGGAAGTAAGTACGGCATTGTGCCTGGCTCTCGTGACAATTCTCTTTACAATGCTCTTTGGGTTGCACAAGCCCTTCTCCGTAAAGGGTAAAATTTGCTCATTTCCTTTTTGTTTTCCCCTGAAATGATGTGCACCCTCTTCATTTACTGGTGTTCAAACCATTTCCAGATCTGCAAAAACTGCTGATAAACGTATTCTCTTGCTTACAAATGAAGATG</genome_strand>
        <mrna_strand>CTTCGATATGTCAATGGACCTCGACCCAGATGAAGTCTTCCGTGATGATGAATATGACCCTGAAAATGAATTCTTCAAG..................................................................................................................................................................................GAAAGAGATAATACTAAGGAGTTCTTGGTATATCTTGTGGATGCTTCACCTAAAATGTTTTGCTCTACTTGCCCAACG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATGAAAAGATTGCAACTCATTTTCAAGTTGCCGTCAGCTCAATTGCACAGTCTCTCAGAACTCAGATTATTAATAGGTCTTATGATGAAGTTTCTATATGCTTCTTTAACACT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGGGAAAAAAGAACTTGCAGGACCTAAGTGGCGTTTATGTATTTAATGTCCGAGAAAGAGAGGATCTGGACAGACCAACAGCTAGGCTAATTAAAGAATTTGATCAAATAGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGATTTGAAAAAGAAATAGGAAGTAAGTACGGCATTGTGCCTGGCTCTCGAGACAATTCTCTTTACAATGCTCTTTGGGTTGCACAAGCCCTTCTCCGTAAAGG..................................................................................ATCTGCAAAAACTGCTGATAAACGTATTCTCTAGCTTACAAATGAAGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E337280" ref_strand="+" ref_description="SGN-E337280 [cTOE-7-L11]">
      <seq>cagatgaagtcttccgtgatgatgaagatgaccctgaaaatgaattcttcaaggaaagagataatactaaggagttcttggtatatcttgtggatgcttcacctaaaatgttttcctctacttgcccaacggatgatgaaaagattgcaactcattttcaagttgccgtcagctcaattgcacagtctctcagaactcagattattaataggtcttatgatgaagtttctatatgcttctttaacactcggggaaaaaagaacttgcaggacctaagtggcgtttatgtatttaatgtccgagaaagagaggatctggacagaccaacagctaggctaattaaagaatttgatcaaatagaagaaagatttgaaaaagaaataggaagtaagtacggcattgtgcctggctctcgtgacaattctctttacaatgctctttgggttgcacaagcccttctccgtaaaggatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="-" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="58639" stop="55194"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58339" g_stop="58287" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58286" i_stop="58109" i_length="178">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58108" g_stop="58031" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="131" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58030" i_stop="57017" i_length="1014">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57016" g_stop="56900" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="248" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56899" i_stop="56387" i_length="513">
            <donor d_prob="0.865" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56386" g_stop="56272" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="363" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56271" i_stop="55602" i_length="670">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="55601" g_stop="55496" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="469" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="55495" i_stop="55414" i_length="82">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.424" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="55413" g_stop="55409" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="474" r_length="5" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="-" ref_id="SGN-E337280" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337280" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58339" e_stop="58287"/>
          <exon e_start="58108" e_stop="58031"/>
          <exon e_start="57016" e_stop="56900"/>
          <exon e_start="56386" e_stop="56272"/>
          <exon e_start="55601" e_stop="55496"/>
          <exon e_start="55413" e_stop="55409"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATGAAGTCTTCCGTGATGATGAAGATGACCCTGAAAATGAATTCTTCAAGGTAAGCCCCCTTAACCTTTTTTGTTTGTTTTTTTAAAAAATTAGTGGAAATGGGTAAAATAAACATGCAGGAAAGAGATTCCTATAAGGAATTATTATGATTTTTCACTTTCTTGTTTGGGCTAAGATTGATTATCAAGCTCTTTGATATTTTTTATTTATCAAAACTAAACATTCAGGAAAGAGATAATACTAAGGAGTTCTTGGTATATCTTGTGGATGCTTCACCTAAAATGTTTTCCTCTACTTGCCCAACGGTTAGTCCTTTTTACCAGCTGTTTTTGTCATTTTGATTGATTTTGGTCATTTCCCGTTACTTCACTTCACTTCAAACTGATGAAGTTGACTTATTTCACTGTTAATTTCTGTTAGACATTAATTTATAATCTGATCGAGTAGAGTTCAAGGTGCCTTATCATTACATAGTAGTAAAGTCAGGTCCATTCATGTTTTGACCTCTTGGTCCATGCTCCAGTAGGACCTGGGCGTAAAGGGGTTGGTTGGTTAGAGTTGGCTTGATTTTCACATTTATTGGGGAATGGACCAGCGGTCTGCTTATATAGACTTGATCAATCACTCCCTCTTGAACTAACTTTTGGCGTTGCAAAGCACCACAATTAGGAGTTGTTTTTTCTGGAAAGGGACATCTCCTTGATGTTGGATTTCTATTGCTTTTTGTTAAATGGTAATGTGCATTTTAAGCTGTATGGTTAACAAACTGTTCATTTGGTAGAGATGAATAGAGAGACTTGGTGATAAGTTATTAAGCTAATAAAGATGGAACTTATATTAGAAGTCTAATTTATTATTATATAGAAAGGCATTTCTTGCAAAGCACATTTTTTTTTGAAACTTGTAATGAATATATATATTACAGTTGCACCATAACAGGGCAAAAGGACTTTACAAAATCCCAACCAAGCTTAAGCTACTGCTTCCCGAGGATCCTATCATATTAATAATCAACTAGTGATTAACCTTCTTAGCATATCTTTCAAAGCACAATTGTTAAAATGGTTCATGCGATATTCCTGGTGTCTTGTTGGTGTAATTTGAACTTGCTAGCTGGAGCTTGGAGGAACGAAAGGCTTAATTGGGCTAACAGCAGGTTCCGAATCAATATTTGGCACCTTGTTTGTGTTACTTTCATTAAAATATTCTAAAGGGATCCTAGGAGGCCTATTTTTCTTAAAAGCATCTTCTCAATTTCCTTTAGCATTTTCACCTTTTGATTGTAAATGTGGAATCCCACTCTTTCTTCATTTTTGCAGGATGATGAAAAGATTGCAACTCATTTTCAAGTTGCCGTCAGCTCAATTGCACAGTCTCTCAGAACTCAGATTATTAATAGGTCTTATGATGAAGTTTCTATATGCTTCTTTAACACTGTAAGCCCTTGTTCTCTAAAAGCTGTGACTTTGACAACCCTTTTATGATAATATCCTTAATCTCTGCTTTTCTCTATCTACAAAATTATTTCAGAGTTATACACCCCCCCCCCCACCCCCCAAAAAAAGAGGAAGAAAACAAAAAAATTAAATCCTGATGAATTAAGCTTTGCTGGACCTTCTTTTCCACCTTGGTTGTAACTTGAGAATTCTGTGTGGATTTGTATTTTTCTTTACTTGTGGGATCGAAGTCTTCCTTGTACTATATAAGTTTGATCAAATACTATTTAGGTGGGCCAGATGTATGTGCTCTTGTTATGCAGCAGACTAGGTGGGTTAAAATCTACTTCTATCAAGGCAAATTTGTTTTTGCTATTTCCCCCCTAATTAACACCTGTTTCAAGTTTTTGTTTGCTATTATTAGTATTTCCAAATTTTGATAAGGAAAAACCAAATTAGAGAATTTGTTTTTAGGTGATAATTTTTTCTTATGTTCTTTTTGTGTGATTTCAGCGGGGAAAAAAGAACTTGCAGGACCTAAGTGGCGTTTATGTATTTAATGTCCGAGAAAGAGAGGATCTGGACAGACCAACAGCTAGGCTAATTAAAGAATTTGATCAAATAGAAGGTAAATCATCATATTGGTCTCTAATTTAATTTTTGGTGGGCGTGTAGTATTGCACCTTTCTCTGTTTTGACTAGATTCAACATTGGTCCTCAATTTGCTTCATCATAGTCACATCATTACAGTCAAGATGCGCATAAGCAAAGTGACTCGTGCCAAGTTGTCGTATCATCATTTCGTCTTTTTTTCCCTTGTAAATATGAGCTGTTTCTCAGACTTAAGAGGAAAACTCATCCATGAAGGTGCTCTTAATTTTTCTTCATTAGCAACTTTAACTCCACACTTAAATTTCAGTTTTTGCAGTTAAACCTTAGTGCTTCCTATACTTTGCACTCTGAGGACTCTGGCTTGTTGTCAATCTTCCTAAAGGAACATAGGCTCTTGAATATATGTAGAAGCAGTCATTTTTACTGACTCTTCACAATCGTCTTATGGAGTACTTTATTAGTCCTTGTTTGACCAGCAAACTGGAAAACCCTAAAATGATGTTATTTCATACTTAATTAATAATTATGCGTAGAATTTTCTGCTATGTCAAAATGGACTAAGAATTCATCCTCTATACAATCAGTTAAATGTCTTGCCTCATCAATGAATAAACTCAAGGAAAAACAGTGTGAACTTTTTTGGTTTTTAGACTTGTACTGCAATTACCTGTTTAATTTGTTTGCAGAAAGATTTGAAAAAGAAATAGGAAGTAAGTACGGCATTGTGCCTGGCTCTCGTGACAATTCTCTTTACAATGCTCTTTGGGTTGCACAAGCCCTTCTCCGTAAAGGGTAAAATTTGCTCATTTCCTTTTTGTTTTCCCCTGAAATGATGTGCACCCTCTTCATTTACTGGTGTTCAAACCATTTCCAGATCTG</genome_strand>
        <mrna_strand>CAGATGAAGTCTTCCGTGATGATGAAGATGACCCTGAAAATGAATTCTTCAAG..................................................................................................................................................................................GAAAGAGATAATACTAAGGAGTTCTTGGTATATCTTGTGGATGCTTCACCTAAAATGTTTTCCTCTACTTGCCCAACG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATGAAAAGATTGCAACTCATTTTCAAGTTGCCGTCAGCTCAATTGCACAGTCTCTCAGAACTCAGATTATTAATAGGTCTTATGATGAAGTTTCTATATGCTTCTTTAACACT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGGGAAAAAAGAACTTGCAGGACCTAAGTGGCGTTTATGTATTTAATGTCCGAGAAAGAGAGGATCTGGACAGACCAACAGCTAGGCTAATTAAAGAATTTGATCAAATAGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGATTTGAAAAAGAAATAGGAAGTAAGTACGGCATTGTGCCTGGCTCTCGTGACAATTCTCTTTACAATGCTCTTTGGGTTGCACAAGCCCTTCTCCGTAAAGG..................................................................................ATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E437090" ref_strand="+" ref_description="SGN-E437090 [cSTA-2-L19]">
      <seq>gtgacttcaactgctttgttcaaaaaaatcttcgatatgtcaatggacctcgacccagatgaagtctttcgtgacgatgaagatgaccctgaaaatgaattcttcaaggaaagagatgctattaaggaattattggtgtatcttgtggatgcttcacctaaaatgtgttccactacttgcccaacgggtgatgaaaagactgcaactcattttcaagttgccatcaattccattgcacaatctctcagaactcacattattaataggtcttatgatgaagtttctatatgcttctttaacactcgggaaaaaaagaacttgcaggacctaagtggcgtttatgtatttaatgttccagaaagagaggatctggacagaccaacagctaggctaattaaagaatttgatcaaattgaagaaagatttggaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="-" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="58679" stop="55966"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58379" g_stop="58287" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="108" r_length="93" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58286" i_stop="58109" i_length="178">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58108" g_stop="58031" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="186" r_length="78" r_score="0.897"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58030" i_stop="57017" i_length="1014">
            <donor d_prob="0.960" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57016" g_stop="56900" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="303" r_length="117" r_score="0.932"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56899" i_stop="56387" i_length="513">
            <donor d_prob="0.865" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56386" g_stop="56272" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="418" r_length="115" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="-" ref_id="SGN-E437090" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="0.924" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E437090" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58379" e_stop="58287"/>
          <exon e_start="58108" e_stop="58031"/>
          <exon e_start="57016" e_stop="56900"/>
          <exon e_start="56386" e_stop="56272"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTCAATAAAATCTTCGATATGTCAATGGACCTCGACCCAGATGAAGTCTTCCGTGATGATGAAGATGACCCTGAAAATGAATTCTTCAAGGTAAGCCCCCTTAACCTTTTTTGTTTGTTTTTTTAAAAAATTAGTGGAAATGGGTAAAATAAACATGCAGGAAAGAGATTCCTATAAGGAATTATTATGATTTTTCACTTTCTTGTTTGGGCTAAGATTGATTATCAAGCTCTTTGATATTTTTTATTTATCAAAACTAAACATTCAGGAAAGAGATAATACTAAGGAGTTCTTGGTATATCTTGTGGATGCTTCACCTAAAATGTTTTCCTCTACTTGCCCAACGGTTAGTCCTTTTTACCAGCTGTTTTTGTCATTTTGATTGATTTTGGTCATTTCCCGTTACTTCACTTCACTTCAAACTGATGAAGTTGACTTATTTCACTGTTAATTTCTGTTAGACATTAATTTATAATCTGATCGAGTAGAGTTCAAGGTGCCTTATCATTACATAGTAGTAAAGTCAGGTCCATTCATGTTTTGACCTCTTGGTCCATGCTCCAGTAGGACCTGGGCGTAAAGGGGTTGGTTGGTTAGAGTTGGCTTGATTTTCACATTTATTGGGGAATGGACCAGCGGTCTGCTTATATAGACTTGATCAATCACTCCCTCTTGAACTAACTTTTGGCGTTGCAAAGCACCACAATTAGGAGTTGTTTTTTCTGGAAAGGGACATCTCCTTGATGTTGGATTTCTATTGCTTTTTGTTAAATGGTAATGTGCATTTTAAGCTGTATGGTTAACAAACTGTTCATTTGGTAGAGATGAATAGAGAGACTTGGTGATAAGTTATTAAGCTAATAAAGATGGAACTTATATTAGAAGTCTAATTTATTATTATATAGAAAGGCATTTCTTGCAAAGCACATTTTTTTTTGAAACTTGTAATGAATATATATATTACAGTTGCACCATAACAGGGCAAAAGGACTTTACAAAATCCCAACCAAGCTTAAGCTACTGCTTCCCGAGGATCCTATCATATTAATAATCAACTAGTGATTAACCTTCTTAGCATATCTTTCAAAGCACAATTGTTAAAATGGTTCATGCGATATTCCTGGTGTCTTGTTGGTGTAATTTGAACTTGCTAGCTGGAGCTTGGAGGAACGAAAGGCTTAATTGGGCTAACAGCAGGTTCCGAATCAATATTTGGCACCTTGTTTGTGTTACTTTCATTAAAATATTCTAAAGGGATCCTAGGAGGCCTATTTTTCTTAAAAGCATCTTCTCAATTTCCTTTAGCATTTTCACCTTTTGATTGTAAATGTGGAATCCCACTCTTTCTTCATTTTTGCAGGATGATGAAAAGATTGCAACTCATTTTCAAGTTGCCGTCAGCTCAATTGCACAGTCTCTCAGAACTCAGATTATTAATAGGTCTTATGATGAAGTTTCTATATGCTTCTTTAACACTGTAAGCCCTTGTTCTCTAAAAGCTGTGACTTTGACAACCCTTTTATGATAATATCCTTAATCTCTGCTTTTCTCTATCTACAAAATTATTTCAGAGTTATACACCCCCCCCCCCACCCCCCAAAAAAAGAGGAAGAAAACAAAAAAATTAAATCCTGATGAATTAAGCTTTGCTGGACCTTCTTTTCCACCTTGGTTGTAACTTGAGAATTCTGTGTGGATTTGTATTTTTCTTTACTTGTGGGATCGAAGTCTTCCTTGTACTATATAAGTTTGATCAAATACTATTTAGGTGGGCCAGATGTATGTGCTCTTGTTATGCAGCAGACTAGGTGGGTTAAAATCTACTTCTATCAAGGCAAATTTGTTTTTGCTATTTCCCCCCTAATTAACACCTGTTTCAAGTTTTTGTTTGCTATTATTAGTATTTCCAAATTTTGATAAGGAAAAACCAAATTAGAGAATTTGTTTTTAGGTGATAATTTTTTCTTATGTTCTTTTTGTGTGATTTCAGCGGGGAAAAAAGAACTTGCAGGACCTAAGTGGCGTTTATGTATTTAATGTCCGAGAAAGAGAGGATCTGGACAGACCAACAGCTAGGCTAATTAAAGAATTTGATCAAATAGAAG</genome_strand>
        <mrna_strand>TTGTTCAAAAAAATCTTCGATATGTCAATGGACCTCGACCCAGATGAAGTCTTTCGTGACGATGAAGATGACCCTGAAAATGAATTCTTCAAG..................................................................................................................................................................................GAAAGAGATGCTATTAAGGAATTATTGGTGTATCTTGTGGATGCTTCACCTAAAATGTGTTCCACTACTTGCCCAACG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGATGAAAAGACTGCAACTCATTTTCAAGTTGCCATCAATTCCATTGCACAATCTCTCAGAACTCACATTATTAATAGGTCTTATGATGAAGTTTCTATATGCTTCTTTAACACT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGGAAAAAAAGAACTTGCAGGACCTAAGTGGCGTTTATGTATTTAATGTTCCAGAAAGAGAGGATCTGGACAGACCAACAGCTAGGCTAATTAAAGAATTTGATCAAATTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E560774" ref_strand="+" ref_description="SGN-E560774 [20481]">
      <seq>agaagatgaagttgcactaggcctgctttttcttttgctgtgtggtcttgatgagtcgctgtgaagtgggctaatctatgtcagaagatgcctctttgctggatgtcattgtctttttttcccgagtgtcttggtagtagttcatttttatacagatgaaaacgttaggattattcattggtggcctttctatttggtataggagggtttgggggttgagggatggtcgtaaatgcacacagcatttatcatgtattatatttgtttgggtaccagatgatgcatatactgtctgaattgggtgaattactgccctaaaatttttgtaagccccggttgtagtttatgttcagtatttatacatcattggtttatttttgggtcgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="-" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="59731" stop="58742"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59431" g_stop="59041" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="389" r_length="389" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="-" ref_id="SGN-E560774" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E560774" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59431" e_stop="59041"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGATGAACTTGCAGCTAGGCCTGCTTTTTCTTTTGCTGTGTGGTCTTGATGAGTCGCCGTGAAGTGGGCTATTCTATGTCAGAAGATGCCCTTCTTTGCTGGATGTCATTGTC-TTTTTTCCCGAGTGTCTTGGTAGTAGTTCATTTTTATACAGATGAAAACGTTAGGATTATTCATTGGTGGCCTTTCTATTTGGTATAGGAGGGTTTGGGGGTTGAGGGATGGTCGTAAATGCACACAGCATTTATCATGTATTATATTTGTTTGGGTACCAGATGATGCATATACTGTCTGAATTGGGTGAATTACTACCCTAAAAGTTTTGTAAGCCCCGGTTGTAGTTTATGTTCAGTATTTATACATCATTGGTTTATTTTTGGGTCTAAAG</genome_strand>
        <mrna_strand>AGAAGATGAAGTTGCA-CTAGGCCTGCTTTTTCTTTTGCTGTGTGGTCTTGATGAGTCGCTGTGAAGTGGGCTAATCTATGTCAGAAGATG-CC-TCTTTGCTGGATGTCATTGTCTTTTTTTCCCGAGTGTCTTGGTAGTAGTTCATTTTTATACAGATGAAAACGTTAGGATTATTCATTGGTGGCCTTTCTATTTGGTATAGGAGGGTTTGGGGGTTGAGGGATGGTCGTAAATGCACACAGCATTTATCATGTATTATATTTGTTTGGGTACCAGATGATGCATATACTGTCTGAATTGGGTGAATTACTGCCCTAAAATTTTTGTAAGCCCCGGTTGTAGTTTATGTTCAGTATTTATACATCATTGGTTTATTTTTGGGTCGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E333447" ref_strand="+" ref_description="SGN-E333447 [cTOD-20-I1]">
      <seq>cctcttcctgtggatcaattcccaagggaagccttagatcgtgttttcaaagcaactctagatctgcttattgcctacaaagatcaagtagcagaagcggctaaggaggatgaggcagaagacgatgatgatatgaatggcttgcaaactgatgaggatgacgatgaagatgacgagtctgacaaggaaatgggggatgatgctgaggaaggggatgaagctgacagtactaggcttcaaaaattggctgcacaggcaaaggctttccgctcacatgacgaggatgatgatgatgatgactctgatgacgattttagtgatgatgatgaagagatgcagtcaccccttgatgaggtggaccctttcattttctttgtggaaacaattaaagctatgcaagcatctgatccagtgaagttccagagcctgacccagactttggacttccgttatcaagcattggcaaatggtgttgctgtgcatgctgaggagagaagagcngagatagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="-" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="61038" stop="59249"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60738" g_stop="60645" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60644" i_stop="60559" i_length="86">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60558" g_stop="60398" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="255" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60397" i_stop="59912" i_length="486">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59911" g_stop="59776" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="391" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59775" i_stop="59668" i_length="108">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59667" g_stop="59549" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="510" r_length="119" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="-" ref_id="SGN-E333447" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333447" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60738" e_stop="60645"/>
          <exon e_start="60558" e_stop="60398"/>
          <exon e_start="59911" e_stop="59776"/>
          <exon e_start="59667" e_stop="59549"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTTCCTGTGGATCAATTCCCAAGGGAAGCCTTAGATCGTGTTTTCAAAGCAACTCTAGATCTGCTTATTGCCTACAAAGATCAAGTAGCAGGTTAAACTTATTTTAGCATTTTCCTCATTTTCTGGTACATTACTACACCATGTACACTCATCTAATATTTTTATCATCGTTTTTAGAAGCGGCTAAGGAGGATGAGGCAGAAGACGATGATGATATGAATGGCTTGCAAACTGATGAGGATGACGATGAAGATGACGAGTCTGACAAGGAAATGGGGGATGATGCTGAGGAAGGGGATGAAGCTGACAGTACTAGGCTTCAAAAATTGGCTGCACAGGTACTAAAATTGTACTTGTACTGCTGATGCATATTTTTGGTGGAGTAGAGTCATCTATTACTTTCTGCTTTATTTTAACCAGAATGGGGGTCATAAGACAGCCTCTCTACCTGCACAATGTAGGAGTAAGGTTTGCGTACATACACTCCTGGACCCCATTGTTGGATTACACTGGGTGTGTTGTTGTTGAGGATTCGGAATTTATATTTTTAAATAGTGAATTAGCAGCTTGAGATGGGATCTGGTTTCTATCCTTCATATGACAACAGTTGAGCAACTTATTGCAGAGAAAGCACAAGATTTTTATTTGAATGTGGTTGAACAAGAGAACACATAGGGTTTTATGTCAGTTGTGTACTTGTTGACATGAGTTTGTTGGAGAATTTATTACAGATGGAGGGCTGGACGTCTCTAGTTCAAGACAACGATGGCCGCCATTAGAGTTAGCATCTCTAAAAGCTTTGACATCTTGTTCTGCTTTTGTAGGCAAAGGCTTTCCGCTCACATGACGAGGATGATGATGATGATGACTCTGATGACGATTTTAGTGATGATGATGAAGAGATGCAGTCACCCCTTGATGAGGTGGACCCTTTCATTTTCTTTGTGGAAACAATTAAAGGTATGATGCTCTGCTTGCCTATTTTGTTTTCAGAAATGACTTTTTGCTTGGTATGAGGCAATGGGCTCACTTATTTCGTCCCTTCTAACATTGGACTGTTGGATCCAGCTATGCAAGCATCTGATCCAGTGAAGTTCCAGAGCCTGACCCAGACTTTGGACTTCCGTTATCAAGCATTGGCAAATGGTGTTGCTGTGCATGCTGAGGAGAGAAGAGCAGAGATAGAG</genome_strand>
        <mrna_strand>CCTCTTCCTGTGGATCAATTCCCAAGGGAAGCCTTAGATCGTGTTTTCAAAGCAACTCTAGATCTGCTTATTGCCTACAAAGATCAAGTAGCAG......................................................................................AAGCGGCTAAGGAGGATGAGGCAGAAGACGATGATGATATGAATGGCTTGCAAACTGATGAGGATGACGATGAAGATGACGAGTCTGACAAGGAAATGGGGGATGATGCTGAGGAAGGGGATGAAGCTGACAGTACTAGGCTTCAAAAATTGGCTGCACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAGGCTTTCCGCTCACATGACGAGGATGATGATGATGATGACTCTGATGACGATTTTAGTGATGATGATGAAGAGATGCAGTCACCCCTTGATGAGGTGGACCCTTTCATTTTCTTTGTGGAAACAATTAAAG............................................................................................................CTATGCAAGCATCTGATCCAGTGAAGTTCCAGAGCCTGACCCAGACTTTGGACTTCCGTTATCAAGCATTGGCAAATGGTGTTGCTGTGCATGCTGAGGAGAGAAGAGCNGAGATAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E689351" ref_strand="+" ref_description="SGN-E689351 [t3_tus_84_E19]">
      <seq>tttaagtcgagctgaaaatcacatctgaagtgtctctcgttccaagtgatagctgatgctctttactacaatgcacccttgacatggaacatccttcaaaagcttggccttgctctagaggtgtttaatctctggtttctgatgttgggacaaacaaaaaagagcggaaaacgggttaacttcaaaagggaacatgacaaaaaggtttgctgcttgggcttgacatctttgctccctcttcctgtggatcaattcccaagggaagccttagatcgtgttttcaaagcaactctngatctgcttattgcctacaaagatcaagtagcagaagcggctaaggaggatgaggcagaagacgatgatgatatgaatggcttgcaaactgatgaggatgacgatgaagatgacgagtctgacaaggaaatgggggatgatgctgaggaaggggatgaagctgacagtactaggcttcaaaaattggctgcacaggcaaaggctttccgctcacatgacgaggatgatgatgatgatgactctgatgacgatnttagtgatgatgatgaagagatgcagtcaccccttgatgaggtggaccctttcattttctttgtggaaacaattaaagctatgcaagcatctgatccagtgaagttccagagcctgacccagactttggacttccgttatcaagcattggcaaatggtgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="-" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="62408" stop="59284"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62108" g_stop="62060" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="0.878"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62059" i_stop="61043" i_length="1017">
            <donor d_prob="0.984" d_score="0.88"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61042" g_stop="60903" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="188" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60902" i_stop="60785" i_length="118">
            <donor d_prob="0.708" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60784" g_stop="60645" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="328" r_length="140" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60644" i_stop="60559" i_length="86">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60558" g_stop="60398" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="489" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="60397" i_stop="59912" i_length="486">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59911" g_stop="59776" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="625" r_length="136" r_score="0.993"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="59775" i_stop="59668" i_length="108">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="59667" g_stop="59584" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="626" r_stop="709" r_length="84" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="-" ref_id="SGN-E689351" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E689351" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62108" e_stop="62060"/>
          <exon e_start="61042" e_stop="60903"/>
          <exon e_start="60784" e_stop="60645"/>
          <exon e_start="60558" e_stop="60398"/>
          <exon e_start="59911" e_stop="59776"/>
          <exon e_start="59667" e_stop="59584"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCGTCGAGCTGAAAAATCACATCTGAAGTGTCTCTTGGTCCAAGTGGTAATTTACTTAATGTTCAAACTTACTTTTGGGTATGTTTCTCTATTAAGTGTGTACTCTTGTTGGTATGTGGTAATTGGATGCTTCCTGAAACAGTAATATAGGAGTGCTAGCTATCTTGCGTCAGAGACTCCCTATGTGTCTTTTTGTTTCTGTTTTGCTAACCGTTGATCTATGAAATGTATTGTCTGTCATTTTCATATGACATATGCAGATGGATGCTTTCTTTGCTGCAGCAACATGCACATTCTTCATTTGTTATGAAAACAACGTTTTGATGAAATTGAATTCAATTGCATTGTGGTTGATCACATGAATCCTATATAGCAATGCTAGTATTGGAACCATTTCATTGGCATACTCAATTTCTTTTCCGCAACAAATGTTGTGGTTCTCTAAAACTAGAGTGCTCTACATCTCACACTTGTCACTCTACTGGCTTACATATGTCCTAAACAAATTATGATAATATTCTTAGAGCTGGACTGGTTGTGTGTGCAATTGGGCTAGGCAAGCTAGTTGGTATTCTTCCCATGTTTTGTTCTTTATTTATTTCCAAATGGCTCCAGAGAGATGGTAGCTTTCTGGAGCTCCGTGTGCTTTTAGGTGTATTAAGTCCCCTTTTAATTCCTTCAATCACCACAGTGTTGCGCATAGTGAATACTGCATTTGGAGATTTACGAGGTGGTGTGTATCAGTTTTGGGAAGAATTTGATTCTTCTTTTTCTCGTTCATTGTCAGAAGGCAATATAACAACCATGAATTTATATTTAATATGGGGTGTATCTGTTGAGTGTAGACCCTTCAAGAGCCGTCTGTGTACTTTCCCCTTCTCCCTTCTAACTGATCATCAAATTTGATGCACGTAGAATATATCTATACATATGATAAATTGCTGATGTTTCTATTTGCTTTAAGTGTTGGTACTCAGATTGTTCATAGCTTATTGTTCTTTTCTAGATTTTGTTTCACAGGTTGCTGATGTTTCTATTGTTTTGATAATTTTCCTTTTGGCAGATAGCTGATGCTCTTTACTACAATGCACCCTTGACATGGAACATCCTTCAAAAGCTTGGCCTTGCTCTAGAGGTGTTTAATCTCTGGTTTCTGATGTTGGGACAAACAAAAAAGAGCGGAAAACGGGTTAACTTCAAAAGGTGAAGAAGGCCTGTTACTCTTGCTGTTTCCAATGAAAAAGGAGAAGTTTAAACAATTTTGAATGAATTAGCAGGTAAACAGTCCCATTAATGTTATGCTCCTTATATTGTTTTGCAGGGAACATGACAAAAAGGTTTGCTGCTTGGGCTTGACATCTTTGCTCCCTCTTCCTGTGGATCAATTCCCAAGGGAAGCCTTAGATCGTGTTTTCAAAGCAACTCTAGATCTGCTTATTGCCTACAAAGATCAAGTAGCAGGTTAAACTTATTTTAGCATTTTCCTCATTTTCTGGTACATTACTACACCATGTACACTCATCTAATATTTTTATCATCGTTTTTAGAAGCGGCTAAGGAGGATGAGGCAGAAGACGATGATGATATGAATGGCTTGCAAACTGATGAGGATGACGATGAAGATGACGAGTCTGACAAGGAAATGGGGGATGATGCTGAGGAAGGGGATGAAGCTGACAGTACTAGGCTTCAAAAATTGGCTGCACAGGTACTAAAATTGTACTTGTACTGCTGATGCATATTTTTGGTGGAGTAGAGTCATCTATTACTTTCTGCTTTATTTTAACCAGAATGGGGGTCATAAGACAGCCTCTCTACCTGCACAATGTAGGAGTAAGGTTTGCGTACATACACTCCTGGACCCCATTGTTGGATTACACTGGGTGTGTTGTTGTTGAGGATTCGGAATTTATATTTTTAAATAGTGAATTAGCAGCTTGAGATGGGATCTGGTTTCTATCCTTCATATGACAACAGTTGAGCAACTTATTGCAGAGAAAGCACAAGATTTTTATTTGAATGTGGTTGAACAAGAGAACACATAGGGTTTTATGTCAGTTGTGTACTTGTTGACATGAGTTTGTTGGAGAATTTATTACAGATGGAGGGCTGGACGTCTCTAGTTCAAGACAACGATGGCCGCCATTAGAGTTAGCATCTCTAAAAGCTTTGACATCTTGTTCTGCTTTTGTAGGCAAAGGCTTTCCGCTCACATGACGAGGATGATGATGATGATGACTCTGATGACGATTTTAGTGATGATGATGAAGAGATGCAGTCACCCCTTGATGAGGTGGACCCTTTCATTTTCTTTGTGGAAACAATTAAAGGTATGATGCTCTGCTTGCCTATTTTGTTTTCAGAAATGACTTTTTGCTTGGTATGAGGCAATGGGCTCACTTATTTCGTCCCTTCTAACATTGGACTGTTGGATCCAGCTATGCAAGCATCTGATCCAGTGAAGTTCCAGAGCCTGACCCAGACTTTGGACTTCCGTTATCAAGCATTGGCAAATGGTGTTG</genome_strand>
        <mrna_strand>TTTAAGTCGAGCTG-AAAATCACATCTGAAGTGTCTCTCGTTCCAAGTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCTGATGCTCTTTACTACAATGCACCCTTGACATGGAACATCCTTCAAAAGCTTGGCCTTGCTCTAGAGGTGTTTAATCTCTGGTTTCTGATGTTGGGACAAACAAAAAAGAGCGGAAAACGGGTTAACTTCAAAAG......................................................................................................................GGAACATGACAAAAAGGTTTGCTGCTTGGGCTTGACATCTTTGCTCCCTCTTCCTGTGGATCAATTCCCAAGGGAAGCCTTAGATCGTGTTTTCAAAGCAACTCTNGATCTGCTTATTGCCTACAAAGATCAAGTAGCAG......................................................................................AAGCGGCTAAGGAGGATGAGGCAGAAGACGATGATGATATGAATGGCTTGCAAACTGATGAGGATGACGATGAAGATGACGAGTCTGACAAGGAAATGGGGGATGATGCTGAGGAAGGGGATGAAGCTGACAGTACTAGGCTTCAAAAATTGGCTGCACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAGGCTTTCCGCTCACATGACGAGGATGATGATGATGATGACTCTGATGACGATNTTAGTGATGATGATGAAGAGATGCAGTCACCCCTTGATGAGGTGGACCCTTTCATTTTCTTTGTGGAAACAATTAAAG............................................................................................................CTATGCAAGCATCTGATCCAGTGAAGTTCCAGAGCCTGACCCAGACTTTGGACTTCCGTTATCAAGCATTGGCAAATGGTGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E332894" ref_strand="+" ref_description="SGN-E332894 [cTOD-19-C2]">
      <seq>tccgtcgagctgaaaaatcacatctgaagtgtctcttggtccaagtgatagctgatgctctttactacaatgcacccttgacatggaacatccttcaaaagcttggccttgctctagaggtgtttaatctctggtttctgatgttgggacaaacaaaaaagagcggaaaacgggttaacttcaaaagggaacatgacaaaaaggtttgctgcttgggcttgacatctttgctccctcttcctgtggatcaattcccaagggaagccttagatcgtgttttcaaagcaactctagatctgcttattgcctacaaagatcaagtagcagaagcggctaaggaggatgaggcagaagacgatgatgatatgaatggcttgcaaactgatgaggatgacgatgaagatgacgagtctgacaacgaaatgggggatgatgctgaggaaggggatgaagctgacagtactangcttcaaaaattggctgcacaggcaaaagctttccgctcacatgacgaggatgatgatgatgatgactctgatgacgattttantgatgatgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="-" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="62406" stop="59538"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62106" g_stop="62060" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62059" i_stop="61043" i_length="1017">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61042" g_stop="60903" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="187" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60902" i_stop="60785" i_length="118">
            <donor d_prob="0.708" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60784" g_stop="60645" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="327" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60644" i_stop="60559" i_length="86">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60558" g_stop="60398" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="488" r_length="161" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="60397" i_stop="59912" i_length="486">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59911" g_stop="59838" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="562" r_length="74" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="-" ref_id="SGN-E332894" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332894" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62106" e_stop="62060"/>
          <exon e_start="61042" e_stop="60903"/>
          <exon e_start="60784" e_stop="60645"/>
          <exon e_start="60558" e_stop="60398"/>
          <exon e_start="59911" e_stop="59838"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGTCGAGCTGAAAAATCACATCTGAAGTGTCTCTTGGTCCAAGTGGTAATTTACTTAATGTTCAAACTTACTTTTGGGTATGTTTCTCTATTAAGTGTGTACTCTTGTTGGTATGTGGTAATTGGATGCTTCCTGAAACAGTAATATAGGAGTGCTAGCTATCTTGCGTCAGAGACTCCCTATGTGTCTTTTTGTTTCTGTTTTGCTAACCGTTGATCTATGAAATGTATTGTCTGTCATTTTCATATGACATATGCAGATGGATGCTTTCTTTGCTGCAGCAACATGCACATTCTTCATTTGTTATGAAAACAACGTTTTGATGAAATTGAATTCAATTGCATTGTGGTTGATCACATGAATCCTATATAGCAATGCTAGTATTGGAACCATTTCATTGGCATACTCAATTTCTTTTCCGCAACAAATGTTGTGGTTCTCTAAAACTAGAGTGCTCTACATCTCACACTTGTCACTCTACTGGCTTACATATGTCCTAAACAAATTATGATAATATTCTTAGAGCTGGACTGGTTGTGTGTGCAATTGGGCTAGGCAAGCTAGTTGGTATTCTTCCCATGTTTTGTTCTTTATTTATTTCCAAATGGCTCCAGAGAGATGGTAGCTTTCTGGAGCTCCGTGTGCTTTTAGGTGTATTAAGTCCCCTTTTAATTCCTTCAATCACCACAGTGTTGCGCATAGTGAATACTGCATTTGGAGATTTACGAGGTGGTGTGTATCAGTTTTGGGAAGAATTTGATTCTTCTTTTTCTCGTTCATTGTCAGAAGGCAATATAACAACCATGAATTTATATTTAATATGGGGTGTATCTGTTGAGTGTAGACCCTTCAAGAGCCGTCTGTGTACTTTCCCCTTCTCCCTTCTAACTGATCATCAAATTTGATGCACGTAGAATATATCTATACATATGATAAATTGCTGATGTTTCTATTTGCTTTAAGTGTTGGTACTCAGATTGTTCATAGCTTATTGTTCTTTTCTAGATTTTGTTTCACAGGTTGCTGATGTTTCTATTGTTTTGATAATTTTCCTTTTGGCAGATAGCTGATGCTCTTTACTACAATGCACCCTTGACATGGAACATCCTTCAAAAGCTTGGCCTTGCTCTAGAGGTGTTTAATCTCTGGTTTCTGATGTTGGGACAAACAAAAAAGAGCGGAAAACGGGTTAACTTCAAAAGGTGAAGAAGGCCTGTTACTCTTGCTGTTTCCAATGAAAAAGGAGAAGTTTAAACAATTTTGAATGAATTAGCAGGTAAACAGTCCCATTAATGTTATGCTCCTTATATTGTTTTGCAGGGAACATGACAAAAAGGTTTGCTGCTTGGGCTTGACATCTTTGCTCCCTCTTCCTGTGGATCAATTCCCAAGGGAAGCCTTAGATCGTGTTTTCAAAGCAACTCTAGATCTGCTTATTGCCTACAAAGATCAAGTAGCAGGTTAAACTTATTTTAGCATTTTCCTCATTTTCTGGTACATTACTACACCATGTACACTCATCTAATATTTTTATCATCGTTTTTAGAAGCGGCTAAGGAGGATGAGGCAGAAGACGATGATGATATGAATGGCTTGCAAACTGATGAGGATGACGATGAAGATGACGAGTCTGACAAGGAAATGGGGGATGATGCTGAGGAAGGGGATGAAGCTGACAGTACTAGGCTTCAAAAATTGGCTGCACAGGTACTAAAATTGTACTTGTACTGCTGATGCATATTTTTGGTGGAGTAGAGTCATCTATTACTTTCTGCTTTATTTTAACCAGAATGGGGGTCATAAGACAGCCTCTCTACCTGCACAATGTAGGAGTAAGGTTTGCGTACATACACTCCTGGACCCCATTGTTGGATTACACTGGGTGTGTTGTTGTTGAGGATTCGGAATTTATATTTTTAAATAGTGAATTAGCAGCTTGAGATGGGATCTGGTTTCTATCCTTCATATGACAACAGTTGAGCAACTTATTGCAGAGAAAGCACAAGATTTTTATTTGAATGTGGTTGAACAAGAGAACACATAGGGTTTTATGTCAGTTGTGTACTTGTTGACATGAGTTTGTTGGAGAATTTATTACAGATGGAGGGCTGGACGTCTCTAGTTCAAGACAACGATGGCCGCCATTAGAGTTAGCATCTCTAAAAGCTTTGACATCTTGTTCTGCTTTTGTAGGCAAAGGCTTTCCGCTCACATGACGAGGATGATGATGATGATGACTCTGATGACGATTTTAGTGATGATGATGA</genome_strand>
        <mrna_strand>TCCGTCGAGCTGAAAAATCACATCTGAAGTGTCTCTTGGTCCAAGTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCTGATGCTCTTTACTACAATGCACCCTTGACATGGAACATCCTTCAAAAGCTTGGCCTTGCTCTAGAGGTGTTTAATCTCTGGTTTCTGATGTTGGGACAAACAAAAAAGAGCGGAAAACGGGTTAACTTCAAAAG......................................................................................................................GGAACATGACAAAAAGGTTTGCTGCTTGGGCTTGACATCTTTGCTCCCTCTTCCTGTGGATCAATTCCCAAGGGAAGCCTTAGATCGTGTTTTCAAAGCAACTCTAGATCTGCTTATTGCCTACAAAGATCAAGTAGCAG......................................................................................AAGCGGCTAAGGAGGATGAGGCAGAAGACGATGATGATATGAATGGCTTGCAAACTGATGAGGATGACGATGAAGATGACGAGTCTGACAACGAAATGGGGGATGATGCTGAGGAAGGGGATGAAGCTGACAGTACTANGCTTCAAAAATTGGCTGCACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAAGCTTTCCGCTCACATGACGAGGATGATGATGATGATGACTCTGATGACGATTTTANTGATGATGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E422421" ref_strand="+" ref_description="SGN-E422421 [STM-40-K24]">
      <seq>cgggccccccctcgaggaatatgaattaaatcagatgaggagagaacacctgtttatcatgtcgttgaggaaacttttccgcatcttctcaacatattcaacagtcttgttcagataacaaatccgtcaactgaagtagccgagctgatcaagctcatttgcaaaatattctggtcatccatttatttggagattccgaagcagttgtttgacccaaatgtgttcaatgcctggatggttcttttcttgaatatgttggagaggcctgtccctgtggaaggccatccagctgatccagagctaaggaagtcgtggggatggtggaaggtgaaaaagtggacagtccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="-" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="68435" stop="67192"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68130" g_stop="67968" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="186" r_length="162" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67967" i_stop="67654" i_length="314">
            <donor d_prob="0.146" d_score="0.98"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67653" g_stop="67492" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="348" r_length="162" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="-" ref_id="SGN-E422421" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>325</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E422421" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68130" e_stop="67968"/>
          <exon e_start="67653" e_stop="67492"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCAAATCAGACGAGGAGAGAACACCTGTTTATCATGTCGTTGAGGAAACTTTTCCACATCTTCTCAACATATTCAACAAACTTGTTCAGATAACAAATCCGTCAATTGAAGTAGCCGACCTGATCAAGCTCATTTGCAAAATATTCTGGTCATCCATTTATGTATGTTGCCTTTGATTGTTATTATTTTGTTTGTCTTATAAGGCTACATGTCTGGATGAGGGTTGTTGTTTCTAATTATTTAGCCGAACCCTTTAAAGAAGCGTGTGGTGTGTGTAGCGAGTTTCTGCTTGTTTGCCTTTTCATGTTCTGTTAGTATTTTCAAATATTCTTGATCTGGAAAATAATTCATAGAATTGACCTGGATAAAAATGCTGTCCCCCTGCTGTTCAGATTTATATTCTTATAATATAGATCCTTAAAAAAAAATTTGATAACGTAACTGAAGTGTATGCAACTCTCTCTACCTTTTCCAGTTGGAGATTCCGAAGCAGTTGTTTGACCCAAATGTGTTCAATGCCTGGATGGTTCTTTTCTTGAACATGTTGGAGAGGCCTGTCCCTGTGGAAGGCCAACCAGCTGATCCAGAGCTAAGAAAGTCGTGGGGTTGGTGGAAGGTGAAAAAGTGGACAGTCCAT</genome_strand>
        <mrna_strand>ATT-AAATCAGATGAGGAGAGAACACCTGTTTATCATGTCGTTGAGGAAACTTTTCCGCATCTTCTCAACATATTCAACAGTCTTGTTCAGATAACAAATCCGTCAACTGAAGTAGCCGAGCTGATCAAGCTCATTTGCAAAATATTCTGGTCATCCATTTAT..........................................................................................................................................................................................................................................................................................................................TTGGAGATTCCGAAGCAGTTGTTTGACCCAAATGTGTTCAATGCCTGGATGGTTCTTTTCTTGAATATGTTGGAGAGGCCTGTCCCTGTGGAAGGCCATCCAGCTGATCCAGAGCTAAGGAAGTCGTGGGGATGGTGGAAGGTGAAAAAGTGGACAGTCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E422420" ref_strand="-" ref_description="SGN-E422420 [STM-40-K24]">
      <seq>gaaatatgaattcaaatcagatgaggagagaacacctgtttatcatgtcgttgaggaaacttttccgcatcttctcaacatattcaacagtcttgttcagataacaaatccgtcaactgaagtagccgagctgatcaagctcatttgcaaaatattctggtcatccatttatttggagattccgaagcagttgtttgacccaaatgtgttcaatgcctggatggttcttttcttgaatatgttggagaggcctgtccctgtggaaggccatccagctgatccagagctaaggaagtcgtggggatggtggaaggtgaaaaagtggacagtccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="-" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="68435" stop="67192"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68130" g_stop="67968" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="172" r_length="163" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67967" i_stop="67654" i_length="314">
            <donor d_prob="0.146" d_score="0.98"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67653" g_stop="67492" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="334" r_length="162" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="-" ref_id="SGN-E422420" ref_strand="-">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>325</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E422420" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="68130" e_stop="67968"/>
          <exon e_start="67653" e_stop="67492"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCAAATCAGACGAGGAGAGAACACCTGTTTATCATGTCGTTGAGGAAACTTTTCCACATCTTCTCAACATATTCAACAAACTTGTTCAGATAACAAATCCGTCAATTGAAGTAGCCGACCTGATCAAGCTCATTTGCAAAATATTCTGGTCATCCATTTATGTATGTTGCCTTTGATTGTTATTATTTTGTTTGTCTTATAAGGCTACATGTCTGGATGAGGGTTGTTGTTTCTAATTATTTAGCCGAACCCTTTAAAGAAGCGTGTGGTGTGTGTAGCGAGTTTCTGCTTGTTTGCCTTTTCATGTTCTGTTAGTATTTTCAAATATTCTTGATCTGGAAAATAATTCATAGAATTGACCTGGATAAAAATGCTGTCCCCCTGCTGTTCAGATTTATATTCTTATAATATAGATCCTTAAAAAAAAATTTGATAACGTAACTGAAGTGTATGCAACTCTCTCTACCTTTTCCAGTTGGAGATTCCGAAGCAGTTGTTTGACCCAAATGTGTTCAATGCCTGGATGGTTCTTTTCTTGAACATGTTGGAGAGGCCTGTCCCTGTGGAAGGCCAACCAGCTGATCCAGAGCTAAGAAAGTCGTGGGGTTGGTGGAAGGTGAAAAAGTGGACAGTCCAT</genome_strand>
        <mrna_strand>ATTCAAATCAGATGAGGAGAGAACACCTGTTTATCATGTCGTTGAGGAAACTTTTCCGCATCTTCTCAACATATTCAACAGTCTTGTTCAGATAACAAATCCGTCAACTGAAGTAGCCGAGCTGATCAAGCTCATTTGCAAAATATTCTGGTCATCCATTTAT..........................................................................................................................................................................................................................................................................................................................TTGGAGATTCCGAAGCAGTTGTTTGACCCAAATGTGTTCAATGCCTGGATGGTTCTTTTCTTGAATATGTTGGAGAGGCCTGTCCCTGTGGAAGGCCATCCAGCTGATCCAGAGCTAAGGAAGTCGTGGGGATGGTGGAAGGTGAAAAAGTGGACAGTCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E448343" ref_strand="-" ref_description="SGN-E448343 [cSTS-2-P1]">
      <seq>gaaatatgaattcaaatcagatgaggagagaacacctgtttatcatgtcgttgaggaaacttttccgcatcttctcaacatattcaacagtcttgttcagataacaaatccgtcaactgaagtagccgagctgatcaagctcatttgcaaaatattctggtcatccatttatttggagattccgaagcagttgtttgacccaaatgtgttcaatgcctggatggttcttttcttgaatatgttggagaggcctgtccctgtggaaggccatccagctgatccagagctaaggaagtcgtggggatggtggaaggtgaaaaagtggacagtccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="-" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="68435" stop="67192"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68130" g_stop="67968" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="172" r_length="163" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67967" i_stop="67654" i_length="314">
            <donor d_prob="0.146" d_score="0.98"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67653" g_stop="67492" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="334" r_length="162" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="-" ref_id="SGN-E448343" ref_strand="-">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>325</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E448343" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="68130" e_stop="67968"/>
          <exon e_start="67653" e_stop="67492"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCAAATCAGACGAGGAGAGAACACCTGTTTATCATGTCGTTGAGGAAACTTTTCCACATCTTCTCAACATATTCAACAAACTTGTTCAGATAACAAATCCGTCAATTGAAGTAGCCGACCTGATCAAGCTCATTTGCAAAATATTCTGGTCATCCATTTATGTATGTTGCCTTTGATTGTTATTATTTTGTTTGTCTTATAAGGCTACATGTCTGGATGAGGGTTGTTGTTTCTAATTATTTAGCCGAACCCTTTAAAGAAGCGTGTGGTGTGTGTAGCGAGTTTCTGCTTGTTTGCCTTTTCATGTTCTGTTAGTATTTTCAAATATTCTTGATCTGGAAAATAATTCATAGAATTGACCTGGATAAAAATGCTGTCCCCCTGCTGTTCAGATTTATATTCTTATAATATAGATCCTTAAAAAAAAATTTGATAACGTAACTGAAGTGTATGCAACTCTCTCTACCTTTTCCAGTTGGAGATTCCGAAGCAGTTGTTTGACCCAAATGTGTTCAATGCCTGGATGGTTCTTTTCTTGAACATGTTGGAGAGGCCTGTCCCTGTGGAAGGCCAACCAGCTGATCCAGAGCTAAGAAAGTCGTGGGGTTGGTGGAAGGTGAAAAAGTGGACAGTCCAT</genome_strand>
        <mrna_strand>ATTCAAATCAGATGAGGAGAGAACACCTGTTTATCATGTCGTTGAGGAAACTTTTCCGCATCTTCTCAACATATTCAACAGTCTTGTTCAGATAACAAATCCGTCAACTGAAGTAGCCGAGCTGATCAAGCTCATTTGCAAAATATTCTGGTCATCCATTTAT..........................................................................................................................................................................................................................................................................................................................TTGGAGATTCCGAAGCAGTTGTTTGACCCAAATGTGTTCAATGCCTGGATGGTTCTTTTCTTGAATATGTTGGAGAGGCCTGTCCCTGTGGAAGGCCATCCAGCTGATCCAGAGCTAAGGAAGTCGTGGGGATGGTGGAAGGTGAAAAAGTGGACAGTCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E738400" ref_strand="+" ref_description="SGN-E738400 [LC13CA04]">
      <seq>cacttctccaatttttcgctgtctctgtctgcaacttctattcatcctttcttctctctctttatatacataaactctagaagaagtcctttcttctagggttcatacaatcatttgttttcattatcctttttgctgaaagttgaagttatggattttcagaaccttgctgtcatacttgcaggtgctctaagtccgaatccggatgaacggaaagctgctgagaacagtctcaatcagtttcagcataccccacaacatcttgtgagactgctgcaaatcatagtagatgggtcctgtgacatggcagtccgacaggtggctagtatccattttaagaactttgttgcaaagaactggtgccctcatgatcctgctgagcaatcaaaaattatgccaagtgacaaggaattggtgaggcaaaatattctcatatttattgcacaggttccttcattgttgagggtacagttgggggaatgcattaaaacaatgatacatgcagactacccggagcagtggccaactcttctgccttggataaagcataatctgcaggatcaacaagtatatggtgctttgtttgttctgagaatactctcgaggaaatatgaattcaaatcagacgaggagagaacacctgtttatcatgtcgttgaggaaacttttccacatcttctcaacatattcaacaaacttgttcagataacaaatccgtcaattgaagtagccgacctgatcaagctcatttgcaaaatattctggtcatccatttatttggagattccgaagcagttgttttgacccaaatgtggttcaatgcctggatggttcttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="-" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="71762" stop="67294"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71468" g_stop="71228" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71227" i_stop="69362" i_length="1866">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69361" g_stop="69226" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="376" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69225" i_stop="69052" i_length="174">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69051" g_stop="68964" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="464" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68963" i_stop="68827" i_length="137">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68826" g_stop="68677" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="614" r_length="150" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68676" i_stop="68131" i_length="546">
            <donor d_prob="0.429" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68130" g_stop="67968" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="615" r_stop="777" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67967" i_stop="67654" i_length="314">
            <donor d_prob="0.146" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67653" g_stop="67594" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="778" r_stop="839" r_length="62" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="-" ref_id="SGN-E738400" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>838</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E738400" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71468" e_stop="71228"/>
          <exon e_start="69361" e_stop="69226"/>
          <exon e_start="69051" e_stop="68964"/>
          <exon e_start="68826" e_stop="68677"/>
          <exon e_start="68130" e_stop="67968"/>
          <exon e_start="67653" e_stop="67594"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACACACTCCAATTTTTCGCTGTCTCTGTCTGCAACTTCTATTCATCCTTTCTTCTCTCTCTTTATATACATAAACTCTAGAAGAAGTCCTTTCTTCTAGGGTTCATACAATCATTTGTTTTCATTATCCTTTTTGCTGAAAGTTGAAGTTATGGATTTTCAGAACCTTGCTGTCATACTTGCAGGTGCTCTAAGTCCGAATCCGGATGAACGGAAAGCTGCTGAGAACAGTCTCAATCAGGTTTCATTTGCTTACAAGCTGCTTAAGTATTGTTTTGTTAATTTAAGTTGATTGAGAATAAGCTGAATTTGATTGGATTTGTTGTTACGATTGAATTATGATTCAATTTTACATATCAGAGAGTTATGATATGGTTAATGTTAGTCCTGGATAGCCAGATGAATGTAAAAGCTGCTGAAAACAGGGCTGATCAGGTTTAGTTTGCTTATAAGCAGCAAAAGTATTGATTCTTTTTTCCAAGTTGTTTGGGAATAAACTAAATTTGATCGGATTTGTTGTTATGATTTAATTGTGATTAAATCCATGTTGTTATTTCAAGTTGGATCAGTTTACATGTCAGAAATGTAAAGCTGCTGAAAACAGTGTCCATCTGGTTTAATTTGCTTATAAGCAGCACAAGTTTGATTCTCTTTTATTCAAGTTGCTTGAGAATTAACTGAATTTGATTGGATTTGCTGTTTTGATTGAATTATGATTAAATCTATGTGGTTATTTAAGTTGCATTACATATCAGAGAATTATGATATAATTGATGTTTTTGTTTGTGTTAATCCTGGATATCCAGATGAATGTAAAGCTGCTGAAAACAGTGTCTATCAGGTTTAATTTGCTTATAAGCAGCAAAAGTAAGAATAAACTGAATTTGATTGGATTTGTTGTTATGATTGAATTATGATTAAATCTATGCGGTTATTTGATGTGCAACAAATATGCTGATCAGAGAGTTATGGTATAGTTGATATTGTTGGTAGATTTTGTCCTGAATATCTGGATGAATGTAAAGCTGCTGAAAACAGTCTTCACAAGGTTCAATTTTCTTATATCAAGAGTATTGAATTTTTGTTTCAAGTTGGTTGAGAAAAAAATGAATTTGATTGAAGTTGTTGTTATGATTGAATAATTATTAAATCTATGTGGTTATTTAATTTGTGATCACATATACTGATCAGAGAGTTATGGTACAAATTGTTATTTTTGGTAGTGTTGTGCTGTATATACGATGAACATAAAGCTGCTAAAAACAGTTGAAGCATTAGTATTGAATTTTTCAGGTTGCTCAATTTAATAAGATCTGTAGTAATGATTGAGTTATCATTAAATTCATGTGCTTAGTTGATTGACATCAAACATACTGTATCATAGAGATATGGTAATATTTTTGTAGTTTTATTAGACCTGAATATCATGATGAACGTAAAGCTGCTGAAAATTGTCTCAATCAGGTTTAGTTTACTTATAGAAAGTATATTTTGTTTCTGGTTGCTTCAGATAAAAACTCAATTTGATCAAATTTGTTGTTATGATTGAATTATGATTAGATCTATGTGGTTATTCGATTTGCATCAAGTATACTGATCAGAGAGTTATGTGTAATATTTTTTTCCAGAACTATGGATATGTGGTGTTTGGAAATTGTAGGTAATTGGATTGGGTTTGTGATGTTGGACGTGCAAGTGTATTAAACTATTTAATGATTGACAAATCATATTGCCTGTTTCAAGTTGGATTTTTTTACTTCTGACTCAGGTGTTCTCCTCATGTTCAATTTATTTGACAAAGAAATATATTTGAATTCTCCAATAAAAATAAACAGAGTTTCTTAATTTTGCTGATAGGAAATTGTTTTTCTTAGTTCTGTAATCTGAAGAATGTGGTTTACTTTTTTCTGTACTTTGTTTATTATAAGAGCGTGGTTCTTATTTTAGCTATTTATGTATGTTTAATTTTAAATCATCTCTGTCCTCATGGATTAAAGCTCACAGGTTGACATTATAGGATGTTCAGCACTTGAATTATGGGGAAAAAATTTGTGGACATTGGATTATTTTTAATTTTGTATATTCCTGAGTGCATCTATGTTTGCAGTTTCAGCATACCCCACAACATCTTGTGAGACTGCTGCAAATCATAGTAGATGGGTCCTGTGACATGGCAGTCCGACAGGTGGCTAGTATCCATTTTAAGAACTTTGTTGCAAAGAACTGGTGCCCTCATGATCCTGGTAATGACCTTATTATATACCCCTATAAAGGAGAAATAGAAGAATAATATATTATTTTTTAAAAATATTTATAAGATTTTTTTAATATGCAATAAAATGACAAAGTACATTTCATGATATTTTCATTATGGTTGTGTAAAATTGATATTTACGGAGAAATTGGTGTTGATGTAGCTGAGCAATCAAAAATTATGCCAAGTGACAAGGAATTGGTGAGGCAAAATATTCTCATATTTATTGCACAGGTTCCTTCATTGTTGAGGTATTCTTTATCATCTGTATTTGCTGTAATATGTTTTTTATGGTAATCCTATTTGAAAAATAAAATGTTCATAGTAATTTTCTTTTCTTTTTTGACACTGAACTCTTCTAACTAAACAAGTTTGTTGCTGTGAACAGGGTACAGTTGGGGGAATGCATTAAAACAATGATACATGCAGACTACCCGGAGCAGTGGCCAACTCTTCTGCCTTGGATAAAGCATAATCTGCAGGATCAGCAAGTATATGGTGCTTTGTTTGTTCTGAGAATACTCTCGAGGAAATATGAGTAAGTTGTTGATTTAGAATGGTGCTCTTCTTGACAATCTCTATTTTTCTTTGTTTTGGCTACTCTAGAAATTGTTTCTATGTGCTGCGCTTTACATTCTTCTGCTGATTCATGACCAATGAGTTTGCCTACAGAAAATGCCTTTCATGTATTACACAGTGTATCCCGCCCCCCCTGCTTTGTCTAATGGTAAGATCGTAATTTGTCATGTGTGGCTAAGCCACACATTATGGGTCTGACGCTGCTGCATACAAAAGTTTTATATTTAAGTCGGAAAAAAGTTGAGGGGTGGGGTCATTGTCTACCGAGTTGCAAACTGTGCACCACTGACCCATTAAAATATGTATTATATAGTTTCTCTGAGTTCTCAGCGATGGATGAATAGTATTGAAGTGCAGGGATCTCCTTCTATCTGTTTAGAGATGAAAAACCCTTTTTGAGTGTTTTTGTTATCTATGAATATTCATTCTGTGTCCTAGATCAACTGGATGGTGAAACTCCATTATAACTTCTTCTGTGTATGCACATCTTTTTTCTATTTAACAGATTCAAATCAGACGAGGAGAGAACACCTGTTTATCATGTCGTTGAGGAAACTTTTCCACATCTTCTCAACATATTCAACAAACTTGTTCAGATAACAAATCCGTCAATTGAAGTAGCCGACCTGATCAAGCTCATTTGCAAAATATTCTGGTCATCCATTTATGTATGTTGCCTTTGATTGTTATTATTTTGTTTGTCTTATAAGGCTACATGTCTGGATGAGGGTTGTTGTTTCTAATTATTTAGCCGAACCCTTTAAAGAAGCGTGTGGTGTGTGTAGCGAGTTTCTGCTTGTTTGCCTTTTCATGTTCTGTTAGTATTTTCAAATATTCTTGATCTGGAAAATAATTCATAGAATTGACCTGGATAAAAATGCTGTCCCCCTGCTGTTCAGATTTATATTCTTATAATATAGATCCTTAAAAAAAAATTTGATAACGTAACTGAAGTGTATGCAACTCTCTCTACCTTTTCCAGTTGGAGATTCCGAAGCAGTTG-TTTGACCCAAATGT-GTTCAATGCCTGGATGGTTCTTTTC</genome_strand>
        <mrna_strand>CAC-TTCTCCAATTTTTCGCTGTCTCTGTCTGCAACTTCTATTCATCCTTTCTTCTCTCTCTTTATATACATAAACTCTAGAAGAAGTCCTTTCTTCTAGGGTTCATACAATCATTTGTTTTCATTATCCTTTTTGCTGAAAGTTGAAGTTATGGATTTTCAGAACCTTGCTGTCATACTTGCAGGTGCTCTAAGTCCGAATCCGGATGAACGGAAAGCTGCTGAGAACAGTCTCAATCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCAGCATACCCCACAACATCTTGTGAGACTGCTGCAAATCATAGTAGATGGGTCCTGTGACATGGCAGTCCGACAGGTGGCTAGTATCCATTTTAAGAACTTTGTTGCAAAGAACTGGTGCCCTCATGATCCTG..............................................................................................................................................................................CTGAGCAATCAAAAATTATGCCAAGTGACAAGGAATTGGTGAGGCAAAATATTCTCATATTTATTGCACAGGTTCCTTCATTGTTGAG.........................................................................................................................................GGTACAGTTGGGGGAATGCATTAAAACAATGATACATGCAGACTACCCGGAGCAGTGGCCAACTCTTCTGCCTTGGATAAAGCATAATCTGCAGGATCAACAAGTATATGGTGCTTTGTTTGTTCTGAGAATACTCTCGAGGAAATATGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCAAATCAGACGAGGAGAGAACACCTGTTTATCATGTCGTTGAGGAAACTTTTCCACATCTTCTCAACATATTCAACAAACTTGTTCAGATAACAAATCCGTCAATTGAAGTAGCCGACCTGATCAAGCTCATTTGCAAAATATTCTGGTCATCCATTTAT..........................................................................................................................................................................................................................................................................................................................TTGGAGATTCCGAAGCAGTTGTTTTGACCCAAATGTGGTTCAATGCCTGGATGGTTCTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E315588" ref_strand="+" ref_description="SGN-E315588 [cTOA-22-K20]">
      <seq>gaaaaagcttgaagaagtcagaagttgcccacttgaattgggggacttgaaaatagttagccttggaaaaatagtagaagattcggagctctttcgagatgaggaatttatctggccagaaggttatactgctgtgaggaagttgccatcagtaacagatcccagtgtacgtgtatcatataagatggaggtactgagagatcctgatttccggacacgacctttatttagagttacatcggatagtcgagaacagtttaagggatcttcaccatctgcttgctggaataaagtttacaaacagatgaggaagacacaagttgacaattttgatgaatcaatatctagccgtaaaagtgaaaggacctttggatcaggttctcatatgtttggcttttctcatcctgaaatttcgaaacttataaaggagttatcaaagtccaagattcttgcaaaatccttgaaattggcgtcttcaaaaaatcaagacttgccggctggttataggtctgtccgtgttaaatggaaagatctggaccaatgcaacgtttgccatatggatgaggagtatgaaaataatttgtttttgcagtgtgacaaatgccgaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="+" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="80898" stop="91375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81198" g_stop="81262" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81263" i_stop="81477" i_length="215">
            <donor d_prob="0.613" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81478" g_stop="81570" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="158" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81571" i_stop="81655" i_length="85">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.738" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81656" g_stop="81753" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="256" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81754" i_stop="88697" i_length="6944">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88698" g_stop="88868" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="427" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="88869" i_stop="90684" i_length="1816">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90685" g_stop="90822" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="565" r_length="138" r_score="0.993"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="90823" i_stop="91030" i_length="208">
            <donor d_prob="0.965" d_score="0.98"/>
            <acceptor a_prob="0.859" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="91031" g_stop="91075" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="566" r_stop="610" r_length="45" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="+" ref_id="SGN-E315588" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315588" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81198" e_stop="81262"/>
          <exon e_start="81478" e_stop="81570"/>
          <exon e_start="81656" e_stop="81753"/>
          <exon e_start="88698" e_stop="88868"/>
          <exon e_start="90685" e_stop="90822"/>
          <exon e_start="91031" e_stop="91075"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAAGCTTGAAGAAGTCAGAAGTTGCCCACTTGAATTGGGGGACTTGAAAATAGTTAGCCTTGGTATTTTCTTTCTTCAAATCTAAGCTAAATACTGATTAGAGAGCAAAAAGAATGCAATAATATTCTATTGAAACACCAAAGTACTGTGGTCTTCATTTTTTTTCCTGTTTTGACGAGAAACATTCCCTATTGTCATAACTTAGGTTGATGTTCTCTGCTCACTTAATCAATAACTGTGATATATCAATTCTTCAATGTGCGAATGTCTTATTTAGGAAAAATAGTAGAAGATTCGGAGCTCTTTCGAGATGAGGAATTTATCTGGCCAGAAGGTTATACTGCTGTGAGGAAGTTGCCATCAGTAACAGGTGACTGTTTTCCATTTCTGCTGTGCCTTTGGTTGAATTTAGTGGTATAAAATTGATCATTTCTTCTACTCCTTAATTGAGTCAGATCCCAGTGTACGTGTATCATATAAGATGGAGGTACTGAGAGATCCTGATTTCCGGACACGACCTTTATTTAGAGTTACATCGGATAGTCGAGAACAGGTATTCTGCAATTTTATGATGTCAAGTAAAGTTTTTATTTTTCTGTATTCAATTTGATGATGTCGAATCAAGTTCTTATTTCTCTCTTTAATTACTTCAGTTGCTCACCTGTATGCTATATACTCCTTTGATTATAATTCAGTTTTTGAATGCTGTATAGTTCTGTGGTCTCTTATCTGACTGAGACACTGACTATATTATCTCATGTCTAATATTATAGCTCACTTATGGTAGATACAGATCAGATTGTAGATTTGATAGGAAGTTTGTAATTGACACTTTTTATTGGTGGCCAGCATGCCCTTAATGCTGAAGAATACAACCTTACCAGTTTTTTTAAAAAAGTAAAATATTATAGCTCACTTTTAAAATAGTGGGTTCCTTGTTCAGATTGTGGATATCCTTTCATGAAAACTTCTGCTCCATAGCTTTTGAGAGGAACTGTTCTTTTTCACATTTTGCTGAGAAATATTGTGTTAAACAAACTACTGCTTGTGATCTTTAAGCATTGGACAAAAGTTATCCTGGGATGTAATAAAGAACTAATTGAGCTATTGAAGCTCATTAAGGTTTTCAGTTAGATGGAAATGACACTGTACTGTTCTCTCTTATGAGATAGATGGATACCCAAAGGTTAAAAGGGTAAATCAAAACTACTTATAAAAGAAAGGGTAATTAAGAAACCAAACTGAAGTTTTCAAGGTTGTCATAAAAGTAGATAAATTGCATTGAACTATGATATGCTCATTTTCTTTTTGATAAGGTTAACTGTATATTCACACCAAAAGACCCATCAGGTAAAAACTGATGGGGTGGGATTTACTCACCCAGGGGTATCATCAAGATCAAAAACTACACATGAGACTTGATAATTGTCCCATGAAATCGACTAAACTATCTATCTCTCCCACTATATCCTCTTTACACCAAAAATACAAAAGCTAAGGCTCCTCATCTTGGTATTCTGGAAACTGCTGGCTATTCCATCATGACCTCTTTCATTTCTCTCTCTTCATAATGTCCACCAAATGCATGCTGAAATGCTCCTCCAGCAGTCTTCTTGTGGCCCTCTTCTCACCACTCCTTCCCAATTTTTCAGCAAATCAAAGGATCACCCAATTTATGCCTAGTATACAAAAGAACATGTTCCACAAATTTGCAGCTGTCCGGCAGTGCAAGAACAAGTGGCTATTTATCTGCCTTTTTCTCACACATCGAACACCTTGAGCAAAATAGGGTCAAGCACACTCTAAGATGAAATAAATGAATGCACATAAGCTGGCTCGAATCGCCATGGTGATAAAAAAATTGTTAAGGTGAAGGACTACACGATGGAGGATAAGACCAAATAGGTTGCAACAACAACAACATACAAGTGGAATCCCATAAGTGACTAGCGAGGGTAGAATGTATGCAAGCCTTACCCTGACTTTTGTGTGGCAGAGAGAGATCCTCAACTCAGAAGAGAAAACAAGAAAAGGAAACAATTGGAAAAGAAGGAAGAGAGGAAAAAAGAACAGGAAGAATGCATGCATGGAGAAAATATATGACAACATATATAGCAGATATAGAGCAAAGGAGATTGTAAAACACATCACAAAATAATAAGTTATGCTAATCCTAAACAATACTACTATTATGAAGAACTGTAGAGGAGGCTAGTCTCCTTCCTATCCTACCTAAAGTGTGACATTATTCAGCTACCTACTAACCTTATATCTCAACCTTCATCATTTGTGTTGCCTATCCCACATAAGACAAGATGAGTTACATTCCATTAAAATGTCAACTACGGATCTCAAGCACTTTGAGATTTCATAGGAATATCTGGAGAAGAGCATGAGTTCTTACTTTGTGTTCTATATAGGTATTTTTGATGAACGCTTAAAACTGTACTTTTTTTACCCTGATCCATATGGAGTAATAAATTCATTTATTTGGTTTGTACACATCTCATACGCAAAACGTTTCTATATCTAATCGAAGATATGACTCTCTACAAGTAAGACATTTTTATCTCACAGAGGTTTAAAAGTTAAAACCATATTTTTTGGGTAAGGGAAAACAACTTTCTTGACGATGGGAAGAAAAACTCATGTTTACAAGTGATATATCAAAAGATAGAGAATTCACAAAGAATATGATTCTCTGTGAAAGACACCCCAAAATTTACAGAAACTAGATTCTCACTGGTGCATCAATAAGAAATAATAGACAAGAACATATTACCTCAAACATAAAACTAGTAATCACTGCATTTCATGCGGTTATAAACATAGATAAATGAATTTTAAAAGCTCTCTTTATAATTTTAATTCTATAAATTGTGATATATTATATTTTTTTTTGGGTTGGCTCTAACATTTCTCATATAATTTGTTTCACAAAAGAAAAATCTTGAAAGAAAATATTGATATTAAGACTACATCAATATTATACATAGTAACTTTACATATACAATCACTAGGTGATGAAGTTTTTTTTGTTTTTGTTGTATAAGTAACAAATATCAACAATAAAGATACATTTGGCAGTATTTTGTTGATTATAAATTGTGAAAGCCTTTTTCTTGGATAAATTAGTTAATGTTTAAATCACCTTATACATTTCTATAGCCCATGTGTTGTTGTTCTTCTTCAATGAATCATCATCAATAATTTACAACAAGACCCTTCATTTACTTTTCGATTACTAAAAGGAAAAAAGAGAGGAAATTTTACTCACTTTAGTCAAATTCATTTATAACCTAAGATTATAAAAACAATCTTATAATGGATAAACTTCGATCAAAATGTCTATATTTTGAGTTATTATCAAGTAGAAAATTATATCTCTAGATAAACAACTTTTTTGATGCATACTTTTTAAAAGTTTTTTAATAAGAAAATTTTAGCATTCAAGTTAGGTGTACTTCCATCATTTTTTTGGAAAAATTTTTTGAAGAGGGAATGAGGAGGATTAAAAGTCAGGAAACATTATTGTCTAGTAAAGGGCCTTTAAAAAAAAAAAAGTAAGAAAGGACAAATTCAATTTGAAATCTTACCCCAAAATGCTGGGATTAAAATGGAACAATAAATTTATATTTTGATGCCAGAGATATGTCGCATCATTTTACCAACCTTATTCATATAAACACAACATTCATACATATATTGCTCTTTGTATCTTTCATTTTTCTAGTAGTTATTTTAGATGAAAGAGAATTACAAATTATGCCATCAATGAGGACCAATAATTGGGAGGAAGTTTAAAAAGTGAAAAAAGAAAATTAAGACACAAATTCAACTGTTTCATATTAGTTAAATAAGGAAAAGAGAACTGTGTACACTCTTTTCTGTTTTGTATACATTCAACACATTTCCATCTTTCCTTTTTTTCTCTACTTTCCTTCTCTTTATTATTAATAATCATAAAAAAAGCTCATTTTTCGTTAACAAATAAAGATAGAGATGTAGTATGTCTTTAAAAAAGTGAGATAATTACATTTTGATCAGATGGAAAAAATTGAGCACCTCGACAACATCCCCACACATGATATAAGACATTTCTAAATTAAAGTTATCCCGTTAAGGATTTATCTCCCAAATTTACTTTTAAGTTTTATAGGATGAAGAGAAGGAATATTATTAACAAGGCAATTCGCGAAATTGGGAAGAAAATTTGAGAAAAGAAGAAGTGGAAGAAAATGGAATTTGGTTTGAAATTTAAAAGAAAGGAAATGGTGCGGCGTTGTAGTGAAATATGGAACCCCTTTCCGAAAGATTATAAATGGTACCTAATAATGAGGAAAGAGATAAATATTAAAAATTATATTAGGTGAAATTTAAGAAAACAAATTTAGAACTATAGGAAATTAGATAAATAAATGGAAGTTAATGCAAAAATCTATTAAATTAGATAATAGCAACCCTAGCCTAGGATAGTGCCTTCTCACATGGCCGAAGTCCTTTTATATAGATATATAGATTATTCTCTACCCTTTCAAAAGCTTCTTTATCTTTCTTTCCTGATGTCTAGCTTAACAAGTCCTTCTTGACATTGTTGGCATCACCCATTGCAAGCCAAATTACCTAGAGATTTTCCACCTTTAGTGAGATATTATTCGACAATGTAAAGGTGATGATCCATTGTGCATCCACACTCTTACACATAAAATACCAAATAAGATATGTAATCCTCAAATTCTTAATTTTCGAAATCATTGTCCTTGTTGGCAACCAACTTAAGAAACACACCTTTCTTGGAACCTTGGAGTCCAAATCGGTGGATAGGGAAAGGCCGACTGTTATGTAATTAAGAATTCTAGTTGTCATACTAGGAATTTATTTATGGAGCAATCGAAGTCTTGAAATTCAGTATTAGACTACTTCCTAGTATTAAAGGTTTCTTCTGACTCTTAAGTTTTGTTGGATCTCTTTCATGTAAAATCTGAACTACCCGTCGTAGTGTAGCCAATCTAGCATTGTATTCTGTAGATGTGTGAAACTTATAAAACAAAAAATGTTAGGAGATGAATCTCAATATGCATATACTCTACCTTAAGAAGTTATGCTACTACTAAACTCTTTACCACCACTTCAAAATATTGCTCCACAGTTTGCTCGCGAAGGGAAGTGTGATATTTTAGTCCTCCAACCCCCTCTCCATAATCTATGTTGCTCAGACTCCCCGAAAATATTGTGGCACCCATGTCTGATCCTCCAAAAGTCACTACTTTTGAAGGATCTGTCATTCACACCGTCAAATTTTTTGAAGAGTTCGAGCAACGTAGACCACAATCCCATATCTTTCTTTTATCACCTAGATCTTGATGCTCTATTTAAATCACGACATCCTTTTTCTTGATGGGGTCTTGTTAATAACCCATAGATCTTTCACCTTCACACTATCCAACTCTTTGGGGTCGTAATAGTCTCCCATGAACCAACTGCAACTTCTTGGCACTTTATATCGACTTCTACAAATAGTTTCTTTGAAGTCTTTTAATTTTCATTAAACAAATAGCTGGTACTTGTAACCTAAAGTATGGCAATTGACAATAGTGCTCTTAAGTCTTGATTAGTACTCCATTTCTCCTTTTGGTTAGTGGTATTGTCTGTTGCTGCAAGATACAAGTAAATAGTTTTTTACAATTTCCATAAGATCTCAGGTTCAGATCCCAGTGGAGGAAAAAAACACTACGCGAGTGCTTTTCACAACACCTGTCAGTCTGATGTATTTCATGTTGTAAGACTATGAACAAGACAACTTATTCTTGCAAAACATCTGAGGCCTTTTTGGTTAATTTATATGGCAGCCTCTTCAGGTTTGACTTGGGTGTGCAAAGTGTCTCAGCTTGAACTTTGGAACTTGGAAGACTATTACCAGCTAAATTGTAGAAGTCTCTACCTTCCATCATCCTTGTTTGAAGTATTGGTTTGTGAAATGTTGAACCTCTGATGAATCGATGAATCGTCTAGTATCTACGCTGTCATATATCAACTTCTTGGCTCTGATGTCTTCTGCTCTTTTTCCTAATAGGGGTTAATTTGACACATTAGTGTGTAAGTTTTTCTTTTTTTTTTTGATGAAGTAACTTTGTATTCATAAAAAATCATCATCAAAAGAATGATGAGTTGGGGCACTTACAACGCACAATGGGTGGAACACATCCTTTAGAAAAACTAAAAAGCTTTACAGTTTGCCTAAGAAATCAACTAGAGTTACTACCTCCCCCCACCATATTCTGTTTACACCAAAAAAATAAAAGGCTTAGGCATTTCATTTTGATCTTCTGTGCATTACAGCTTTTGCCTTTAAAACATCTGGTATTCTTTCCTTCCATAAAGTCCACTAGATACAAATTGGAATGTTCATCCACCAATCTTCGCTCTGGCCTCTTCTTCCAATTCCCTTCCAACTGTTGAGTAGCTCCAGGTTTTTTTGACCTAGTAACATTTGTATTTCAGTCAGTACTTAGGTAGTACTGAAAAACCATATTTACAAAAAGAAGAAAAAGATTAAAGTCCTTCCAATGCTAAGCCTGGAACTAGATGGACCCTAAACCATCTATGATTGACTCAGTCTCATTGGTGTAGACATTTGTACACCAAAAACAGAACAACAAATACATTTAAGCTTGTCTTGCCTCAGGTTGTTGTCCCTATTTTCAAGACATCTATCATTTCTCTCTCTCCATATAGTCCACCATATACAAGCAGGGATCATCCTCCATCTTTCTTTGTTTGTACCCAACTCCAGCCTCCTCCCAACTGAAAAGAGTCTCATCAATCTTACTAGGCATCTTCCAAGAAATGCCTCTGAAATTAAGGAAAATCTGCCACAGATGGTCAGTGAAATTGCAGTGTACAAAGAGGTGTTTTACTGTCTCTGTATCCTTACCACAGCTCCAGGATGGTTTTAGGCATTACCCAACTTACTTCCAGAATACGTAAGAACACGTTCCACATATTTGCAGCTGTATCGCAGTGTAGAAACAAATGACTATTTACCTCTGTTTCCTGATCACACATTAATCACCTTGAGCAAATCTGTGAATCTTAGGATATGGGTGATAGATTTTGTTTTGGATGTCCCTTCATATTTTTGATGTAACTACTTAGGAGCACACTATTGGTGTACTTCCTTCTGTTTATAATACCGTGTTAACTTTCTCAAAAAAATCTGTGAATCTCTTCTTTGTAACATCTCAAGAGTTAGGCATGCTCTTCTGATCATAAGCCAAGCGAAACATGGTCTCTACCGCATCAGCTTGTTACCATTTTCCCTCTTTAATTTGATACATTAGTGTCTAATTAACATTTCATGGTCTCTACCGCAATCTTGGAAAACCTAGTTGATCTGTTCTTTTAATTAGCTGGTATTTTTTGCTTAGACATTAATTTTAGTCCATTAATGTTCAGAGAAGTGCTAATGTTAGTCATTGTGGTGCACTTGTTTTGCAGTTTAAGGGATCTTCACCATCTGCTTGCTGGAATAAAGTTTACAAACAGATGAGGAAGACACAAGTTGACAATTTTGATGAATCAATATCTAGCCGTAAAAGTGAAAGGACCTTTGGATCAGGTTCTCATATGTTTGGCTTTTCTCATCCTGAAATTTCGAAACTTATAAAGGTATTATTAGTTTTCTTCTGTTCAACTTTATCTTTTGGTGGTTCTGTTCTTTCGATTTCTGTTCACCATCTTATTATTGAAAAATCCGAGCATGTTTGATATTATTAAGACCATTGACTTTGCAGTTGTCTTATTACAGTCTTATTTTTCTTTGAATACGATCTAAGTGATTATATTATCTTCTGGTTTGTTTCCTCATTCAACACTTTGAAACCGAATCATATCAATTGATAAGATGAGACAGACATTCTATAAACAAATAAGACCATTAAAATGCACTCTATCTTCAAGTGAAGCTGAATATGGTGGAAAGCATCAATTGACAAATGTTATGCCATATAACTATAATAGAATGTATGAAGAGAACAGACTATCCCATTATCTTGTCGCAATGGAAGGCAGCAGATTCTTGTTATGCCTTCGATGATGCATAAATCAAATATAAGTCTATCTTGAATATTTAGAGTTCTTCTTAAATGTGTCTTTATGTATGGATCACAATCTTTATAAATGTGTCTTTATGTATGGATCACAATCTTTAGTTGACCGACCTCAACTTGTTTGGGATTGAGGTCTAGTTGATTGATTGGTAGATAACTACCATATGTCTGCTTATGTACATACTTTTCTCTTCAGACATCGGACCATATGCTTTTTATTTGGCAGTTACATATCTGATTTCATTTTTTTGCGTGGAAAATCACAGTTTTTCTAGTAGCGCAATATGAACGGGAAGTAAGTCATGGTGGTAAAATAAAAGTTGGTTAGTTTTAGGGGAAGAAATGGCTTAGATGAAAAAATGCAATTTTTTTCTAGAGCCTGTATGACGTAGTGCAACCTTTCCAAAATGTTGGGTCCTGTATTGGTTCACTGCTTTGTTTGGTGTATGCTTATCTTATGTAATTTAGAACCAAGGGTATGGCTGGTTCATTCATAATTGTTTGTTTCTATATGTTAGAACAGGAAGAGGTTTATATAATCCTATTGAAATAGGAATAGGTTTATACAATTCTATTAGAATAGGAATATGTTTATACAATCCTATTAGAATAGGAATATGTCTATACAATCCTATTAGAATAGGAATAGGAATACTAAACAGAATCCTTCTTGATAAAGGATTGTATCCTAGGGTCTATAAATAGGGTCTCAATGTAATAATGTAGACATAACAACAATTCAATAATATTCTTTTTCTATATTTCTCTCACTATATTTGTTGAGAACACTAATTCTTTGCTCATTTAGGCCTTGCTTTCACAAACCTAAGAGTTATGTATTGTTTCAGTTGAACATGTTTTATGAGGTTATTTCTGCAGGTGTTGACAAACATATATTTCTCATTGGAGCAATCTTTATAAGATGTTTATATTATATATATAACGTTAAGCTCACTATGATTTAGAAGCCCTTGAGATGTTTCCATTTGCAGTCGCTCTTTTTTTTTTTTTTTTTGAAATTAGTTTCCATTTGCAGTCTTCTATTGATATATATAAGAGTTTTCTGGACATAATATGTTGCATTGTGAAGGTAGGAAGAGATGCACGGACTGAACAGATTTACGGATTTAACTTTATTATGAAGCGATTAATTATTAATTTGTGTCAGAATTATAGGGCATAGGTTCAGAAGAAGCTTGGTAGACGAATAATAACAAGTTGATGGGCATTTAATTCAGGATGTAATGATCATATGACTGTATAACTGTTGACTGGAGAGTGATTAATCTGTGCATGACTTACTTGTATCAGAAAGCTTTGTTCTATATTTTGCTTATGTTTTTTTCCAGTTTCTAAAGCTTATATTATGCTGTCAGGAGTTATCAAAGTCCAAGATTCTTGCAAAATCCTTGAAATTGGCGTCTTCAAAAAATCAAGACTTGCCGGCTGGTTATAGGTCTGTCCGTGTTAAATGGAAAGATCTGGACAAATGCAACGTTTGCCATATGGATGAGGTTAGGAACTGCTTTCATTACTTATGCTCTTTCTTTTTCAGCTTATGCGCTATTTTTGGAGGACTCTTTTACCTATTTTGGTGTTCTTGTTATATATTACTAGTGAAGTTGCATCTGGATAATCTGTATCTTTTTGACTTTGCCTAATTGAGTAGTAACTACGAAATAGTTATTTTGGATCATGCTGATGTAGGTTTATTTCTTACAGGAGTATGAGAATAATTTGTTTTTGCAGTGTGACAAATGCCGAATG</genome_strand>
        <mrna_strand>GAAAAAGCTTGAAGAAGTCAGAAGTTGCCCACTTGAATTGGGGGACTTGAAAATAGTTAGCCTTG.......................................................................................................................................................................................................................GAAAAATAGTAGAAGATTCGGAGCTCTTTCGAGATGAGGAATTTATCTGGCCAGAAGGTTATACTGCTGTGAGGAAGTTGCCATCAGTAACAG.....................................................................................ATCCCAGTGTACGTGTATCATATAAGATGGAGGTACTGAGAGATCCTGATTTCCGGACACGACCTTTATTTAGAGTTACATCGGATAGTCGAGAACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAAGGGATCTTCACCATCTGCTTGCTGGAATAAAGTTTACAAACAGATGAGGAAGACACAAGTTGACAATTTTGATGAATCAATATCTAGCCGTAAAAGTGAAAGGACCTTTGGATCAGGTTCTCATATGTTTGGCTTTTCTCATCCTGAAATTTCGAAACTTATAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTATCAAAGTCCAAGATTCTTGCAAAATCCTTGAAATTGGCGTCTTCAAAAAATCAAGACTTGCCGGCTGGTTATAGGTCTGTCCGTGTTAAATGGAAAGATCTGGACCAATGCAACGTTTGCCATATGGATGAG................................................................................................................................................................................................................GAGTATGAAAATAATTTGTTTTTGCAGTGTGACAAATGCCGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E336167" ref_strand="+" ref_description="SGN-E336167 [cTOE-12-G16]">
      <seq>gaacagttcgatttcaaaatgtacaaatggaagatgtttcaaatccaatcattatagatcaattctactgcgactcacaaaaaccttgtcaaaatcagacatctgcagttgagataagtgaagtactctatcgtaacgttagtggaacaacaaagagcaaaaaggcaataaattcgcgtgtagtgacactggccttgaccatattactctgacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="+" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="117992" stop="118925"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118292" g_stop="118389" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118390" i_stop="118503" i_length="114">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="118504" g_stop="118625" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="215" r_length="117" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="+" ref_id="SGN-E336167" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>220</cumulative_length_of_scored_exons>
        <coverage percentage="1.023" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336167" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118292" e_stop="118389"/>
          <exon e_start="118504" e_stop="118625"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACAGTTCGATTTCAAAATGTACAAATGGAAGATGTTTCAAATCCAATCATTATAGATCAATTCTACTGCGACTCACAAAAACCTTGTCAAAATCAGGTAGATATACATCCTCTGTTTCAACGTGTTTGTCTTACTTCCCTTTTTAGTCTGTTTTAAAAAGAGTTGTGAGAGAAGTATGACAAAATGTGTGTTGTTTATTTGACATTACAGACATCTGCAGTTGAGATAAGTGAAGTACTCTATCGTAACGTTAGTGGAACAACAAAGAGCAAAAAGGCAATGAAATTCGCGTGTAGTGACACTGTGCCTTGTAGCCATATTACTCTGGACAA</genome_strand>
        <mrna_strand>GAACAGTTCGATTTCAAAATGTACAAATGGAAGATGTTTCAAATCCAATCATTATAGATCAATTCTACTGCGACTCACAAAAACCTTGTCAAAATCAG..................................................................................................................ACATCTGCAGTTGAGATAAGTGAAGTACTCTATCGTAACGTTAGTGGAACAACAAAGAGCAAAAAGGCAAT-AAATTCGCGTGTAGTGACACTG-GCCTTG-A-CCATATTACTCT-GACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E468775" ref_strand="+" ref_description="SGN-E468775 [cSTB-6-G23]">
      <seq>attcggcacgaggtcactttattcctccagcaattagggttttggattttgcttcttgtagaattgctccgaagtcgagaagcttcggattcagtcaattttctgctcaatttctatcatcatggcaaatcctacaggaaggtcgtttttgcaagtggcagctacagaggaggctgttgcgccgccactcagagttgttcagattgaaggactggttattttgaaaataataaagcattgccaggagttttcaccggctttggtcactgggcaactccttggattggatgttgggagtgttcttgaagtcactaactgttttccctttccggttcgcgaggaagatgaggagattgaagccgagggtgctaattatcaacttgaaatgatgcgatgcctgagggaggttaatgttgacaacaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="+" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="119308" stop="121992"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119566" g_stop="119704" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="0.878"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119705" i_stop="119799" i_length="95">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119800" g_stop="119882" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="214" r_length="83" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119883" i_stop="121393" i_length="1511">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.610" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121394" g_stop="121510" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="331" r_length="117" r_score="0.957"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121511" i_stop="121598" i_length="88">
            <donor d_prob="0.838" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121599" g_stop="121692" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="425" r_length="94" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="+" ref_id="SGN-E468775" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.019" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E468775" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119566" e_stop="119704"/>
          <exon e_start="119800" e_stop="119882"/>
          <exon e_start="121394" e_stop="121510"/>
          <exon e_start="121599" e_stop="121692"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCGTCTCGTCTCCTCATTTTGTTCCTCCAGCAATTAGGGTTTTGGATTTTGGATTTGCTTCTTGTGGAATTGCTCCGAAGTCGAGAAGCTTCGGATTCAGTCAATTTTCTGCTCAATTTCTATCATCATGGCAAATCGTACGCATAATTTTCCTTATTTGATTCTTTGCGAGGAATTTTTTGGGTACAATATGTGTAGTTAGCGATTAACCCCTTCAATTTGATTGATACAGCTACAGGACGGTCGTTTTTGCAAGTGGCAGCTACAGAGGAGGCTGTTGCGCCACCACTCAGAGTTGTTCAGATTGAAGGACTGGTACTATGCACTACTATCTATCTCTTTTTTTGTTTTTAGTATCTGTGCTGTCCGGGTCAGCTTATATGTGATTCCTGGGGTATCGGGTGCCTGATACATCCCATTGTGCTAAACGGGTAACTATGTCCACCAAGGTTTGGACAGGTGTGAAAAGATCAGCTTTGTGTTTTTCTTTGGGGGAATTGAACTTGATACGTGATAGTTCCGTACACACTTTATTCACCTCTAGGTTCACCAATAGGTGTACTATCTCTTCATTTTTTAAAAAAAGATTTTTTTTTTGTTTATGTGTATTTAGTTTGTGGAATCATAGATTAAGAAGTTGAGATTTCAATTGAAGCTCAAGAGCTACCTAGTTAGGTTCAGTGACAATCCCAGAAATCCAACTCAAAAGTAGAAACAAAAGGAAAAGAACTGAGTGATCTCTTGCCCTAATGGGGTGGTTTGCAGTCTTCTTGAAAATCAAGTTTCGAATCCCAGAACAGAGAATAATAGGTGAATTGTTACCTCTGCCTAAACTTGGGTGGATTTGATGTTTCTTCCCTGATGGGAGGTAGCATGTACCCTGTGTGTTAGCTTGCTCTTACTAATTTCACTGATGCTAACTGAACTAGCTACCACAACTTCCTGCTAATTGCCTAACTATAGCTGCATATTAGGCTATTAGCTCTTCTATTCCCCAACTATTGTTTGATATGCTGACCTTTCTCCTGTTCTTTCCTCCATATTCTTTAGATTATTTTTTTAGTTATTTATGCATCTGTACCATCCTTGTTGTTTACCCTTTGTTCACAAGAATGACCATTTGGCAAGAATACTTTTCGTCTAAACCATGAGTTATGCAATCAATCCTCAATGTCAATTGCTGCATTACCTTTAACCTTGATGTCTCCTACAAAATAATGTAGATAATTTCTTTGCAAGGATCAAACAAATTATACCCTGCATGCATACATTGCACCCACATAGTTGATAGAATTGTAGTCATCCCAAACTCTGCAAGAGGGGTACAAAAGACTCACAAGCAAAAGAGGGTGAAACAGCCAATTGATGTAAGGAGCAAGATTGTGGGATGAACTTGCTGCAACTACTTAGCCGTACTTGTCTGTTATTTGTTGTTTCTAACAGCATCATTGTGAAAAGTTAGTTCATAGACTAGTAGAGGTTCTTAAGTATCCCGGGCATGCAGAGTTCTTCCTTCTACTGATGTTAGCTTCTGCAACTTTCTTCTATTGAGAAAGGTGGAGCATCAAACCTTTTTCTTTTGATTTAAGTGGACACACTATTTTGGACAAACCACAAGGCATAGTTGGACATGTAAAAAGGGATCAAAGGAGTAATATTAATTTATGCCCTTAATTTTGTATTACAATGTTCCAAGAGATGTGACGTTGCACAGCAATGGGTGGGAAAAAAGTGATTTGTTCTATCTTCTTAGAGTAATAAAATGTATCTGCATCCGTTGACTGCCTTCTCATGTGTAGTTTCCTGAAGTTAACTCTGTAATACAGGTTATTTTGAAAATAATCAAGCATTGCCAAGAGTTTTCACCGGCTTTGGTCACTGGACAACTCCTTGGATTGGATGTTGGAAGTGTTCTTGAAGTCACTAACTGTTTTCCTTTTCCGGTATGGTGAAGTCTGGTGTTTCTTGCTTCTTCTTTATACAGTTTCGATATTATTTGAACTAACTCTTTTTCACATCTATTTTACTCAGGTTCGCGAGGAAGATGAGGAGATTGAAGCCGAGGGTGCTAATTATCAACTTGAAATGATGCGATGCCTGAGGGAGGTTAATGTTGACAACAACA</genome_strand>
        <mrna_strand>ATTCGGCACGA--GGTCACTTTATTCCTCCAGCAATTAGGGTTTTGGA---T---TTTGCTTCTTGTAGAATTGCTCCGAAGTCGAGAAGCTTCGGATTCAGTCAATTTTCTGCTCAATTTCTATCATCATGGCAAATC...............................................................................................CTACAGGAAGGTCGTTTTTGCAAGTGGCAGCTACAGAGGAGGCTGTTGCGCCGCCACTCAGAGTTGTTCAGATTGAAGGACTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTTTGAAAATAATAAAGCATTGCCAGGAGTTTTCACCGGCTTTGGTCACTGGGCAACTCCTTGGATTGGATGTTGGGAGTGTTCTTGAAGTCACTAACTGTTTTCCCTTTCCG........................................................................................GTTCGCGAGGAAGATGAGGAGATTGAAGCCGAGGGTGCTAATTATCAACTTGAAATGATGCGATGCCTGAGGGAGGTTAATGTTGACAACAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E570892" ref_strand="+" ref_description="SGN-E570892 [15547]">
      <seq>ctcgtctcctcactttattcctccagcaattagggttttggattttgcttcttgtagaattgctccgaagtcgagaagcttcggattcagtcaattttctgctcaatttctatcatcatggcaaatcctacaggaaggtcgtttttgcaagtggcagctacagaggaggctgttgcgccgccactcagagttgttcagattgaaggactggttattttgaaaataataaagcattgccaggagttttcaccggctttggtcactgggcaactccttggattggatgttgggagtgttcttgaagtcactaactgttttccctttccggttcgcgaggaagatgaggagattgaagccgagggtgctaattatcaacttgaaatgatgcgatgcctgagggaggttaatgttgacaacaacaccgtgggttggtatcaatcaactttgtttggttcttatcagacagtggaactgatagagaccttcatgaattaccaggagaatataaaacgttgtgtctgcataatttatgatccttctagatccaaccaaggtgtcttagctttgaaagccttgaagctttctgattctttcatggaactctacaagagtaacaactttactggagagaagctgagagaaaagaatctttcatgggttgacatctttgaagagataccactaaaaagtttcgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="+" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="119272" stop="124123"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119572" g_stop="119704" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119705" i_stop="119799" i_length="95">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119800" g_stop="119882" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="210" r_length="83" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119883" i_stop="121393" i_length="1511">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.610" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121394" g_stop="121510" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="327" r_length="117" r_score="0.957"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121511" i_stop="121598" i_length="88">
            <donor d_prob="0.838" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121599" g_stop="121702" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="431" r_length="104" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121703" i_stop="122260" i_length="558">
            <donor d_prob="0.962" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="122261" g_stop="122327" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="498" r_length="67" r_score="0.985"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="122328" i_stop="123522" i_length="1195">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="123523" g_stop="123656" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="632" r_length="134" r_score="0.993"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="123657" i_stop="123771" i_length="115">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="123772" g_stop="123820" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="633" r_stop="681" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="+" ref_id="SGN-E570892" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E570892" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119572" e_stop="119704"/>
          <exon e_start="119800" e_stop="119882"/>
          <exon e_start="121394" e_stop="121510"/>
          <exon e_start="121599" e_stop="121702"/>
          <exon e_start="122261" e_stop="122327"/>
          <exon e_start="123523" e_stop="123656"/>
          <exon e_start="123772" e_stop="123820"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGTCTCCTCATTTTGTTCCTCCAGCAATTAGGGTTTTGGATTTTGGATTTGCTTCTTGTGGAATTGCTCCGAAGTCGAGAAGCTTCGGATTCAGTCAATTTTCTGCTCAATTTCTATCATCATGGCAAATCGTACGCATAATTTTCCTTATTTGATTCTTTGCGAGGAATTTTTTGGGTACAATATGTGTAGTTAGCGATTAACCCCTTCAATTTGATTGATACAGCTACAGGACGGTCGTTTTTGCAAGTGGCAGCTACAGAGGAGGCTGTTGCGCCACCACTCAGAGTTGTTCAGATTGAAGGACTGGTACTATGCACTACTATCTATCTCTTTTTTTGTTTTTAGTATCTGTGCTGTCCGGGTCAGCTTATATGTGATTCCTGGGGTATCGGGTGCCTGATACATCCCATTGTGCTAAACGGGTAACTATGTCCACCAAGGTTTGGACAGGTGTGAAAAGATCAGCTTTGTGTTTTTCTTTGGGGGAATTGAACTTGATACGTGATAGTTCCGTACACACTTTATTCACCTCTAGGTTCACCAATAGGTGTACTATCTCTTCATTTTTTAAAAAAAGATTTTTTTTTTGTTTATGTGTATTTAGTTTGTGGAATCATAGATTAAGAAGTTGAGATTTCAATTGAAGCTCAAGAGCTACCTAGTTAGGTTCAGTGACAATCCCAGAAATCCAACTCAAAAGTAGAAACAAAAGGAAAAGAACTGAGTGATCTCTTGCCCTAATGGGGTGGTTTGCAGTCTTCTTGAAAATCAAGTTTCGAATCCCAGAACAGAGAATAATAGGTGAATTGTTACCTCTGCCTAAACTTGGGTGGATTTGATGTTTCTTCCCTGATGGGAGGTAGCATGTACCCTGTGTGTTAGCTTGCTCTTACTAATTTCACTGATGCTAACTGAACTAGCTACCACAACTTCCTGCTAATTGCCTAACTATAGCTGCATATTAGGCTATTAGCTCTTCTATTCCCCAACTATTGTTTGATATGCTGACCTTTCTCCTGTTCTTTCCTCCATATTCTTTAGATTATTTTTTTAGTTATTTATGCATCTGTACCATCCTTGTTGTTTACCCTTTGTTCACAAGAATGACCATTTGGCAAGAATACTTTTCGTCTAAACCATGAGTTATGCAATCAATCCTCAATGTCAATTGCTGCATTACCTTTAACCTTGATGTCTCCTACAAAATAATGTAGATAATTTCTTTGCAAGGATCAAACAAATTATACCCTGCATGCATACATTGCACCCACATAGTTGATAGAATTGTAGTCATCCCAAACTCTGCAAGAGGGGTACAAAAGACTCACAAGCAAAAGAGGGTGAAACAGCCAATTGATGTAAGGAGCAAGATTGTGGGATGAACTTGCTGCAACTACTTAGCCGTACTTGTCTGTTATTTGTTGTTTCTAACAGCATCATTGTGAAAAGTTAGTTCATAGACTAGTAGAGGTTCTTAAGTATCCCGGGCATGCAGAGTTCTTCCTTCTACTGATGTTAGCTTCTGCAACTTTCTTCTATTGAGAAAGGTGGAGCATCAAACCTTTTTCTTTTGATTTAAGTGGACACACTATTTTGGACAAACCACAAGGCATAGTTGGACATGTAAAAAGGGATCAAAGGAGTAATATTAATTTATGCCCTTAATTTTGTATTACAATGTTCCAAGAGATGTGACGTTGCACAGCAATGGGTGGGAAAAAAGTGATTTGTTCTATCTTCTTAGAGTAATAAAATGTATCTGCATCCGTTGACTGCCTTCTCATGTGTAGTTTCCTGAAGTTAACTCTGTAATACAGGTTATTTTGAAAATAATCAAGCATTGCCAAGAGTTTTCACCGGCTTTGGTCACTGGACAACTCCTTGGATTGGATGTTGGAAGTGTTCTTGAAGTCACTAACTGTTTTCCTTTTCCGGTATGGTGAAGTCTGGTGTTTCTTGCTTCTTCTTTATACAGTTTCGATATTATTTGAACTAACTCTTTTTCACATCTATTTTACTCAGGTTCGCGAGGAAGATGAGGAGATTGAAGCCGAGGGTGCTAATTATCAACTTGAAATGATGCGATGCCTGAGGGAGGTTAATGTTGACAACAACACCGTTGGTTGGTAAGAGAGCTTTTTGACTATTAAGCCATCATTTAATCTGGTTAGAACTATGAGGTTCCTTCTTTCTAATTAAGAAATTATTTTTGTCTTTGTGCTAGTTCTCTATTATACTCATTGCTAACCTTTTATTCAGGCAAACATTCTTTTTCTGGGCTGGTGGTACTGTGTGATATGCATTTTCTTTCATCACTATTTCATTTATATTTAAGTATAAACATCTTTTTTCTTGAAATGCTTAGAATATGTATATCTATACCCTTAAGTCTAGAAATGGACAATGTACGACATTTGATGGCCTGATTGCATTTCCGCAGCCTAAAAAGTTACAGTGTTTAAATTTTGCCAGCTCCAAGGCAGTGAAGAGAAAGTTATTATCAAAAAAGGGAGTAACAAAACTGTCATACATGTTAACAATAATAAAACTGTCTTACTTGTTACACAGTAGTGAGAAAGACATGAAAAGCTTGCTCTACCTTTCTTTCCTACATAATTGTCATCTTAACTTTTACTATTACTAATTTGCTCATAATATGGACCTCATTGATGGTTATTTTCCAGGTATCAATCAACTTTGTTTGGTTCATATCAGACAGTGGAACTGATAGAGACCTTCATGAATTACCAGGTATCCATCTCTATGTCCATCTCTCATTGTTGGATTCTGAACTTTCAGTTTCTGCAGCGACCTTAGGTATACTGCACTTATCCTGCAAGTCATTTTCAGTTTAGATAATGTCATGTGGCAACCCCCTTTGTGCTGGCCCTAGGAAGAAAAGGGAGAAAGGATGAAATTAACAACACTGTAGAACTGTTTTTTGTAGTGATGCTAAATGAGTCCAAGGCATTCCAAACTGTGTTACCATTTTAGTAAAGTTTAAATACCTGGGCTCTATGCGTGATAGACCAGTGCATCATGCAAATGACCTGCAGATTAGCAAGACTAATGCCCTGAAGTTCTTTAACCACCCGTTTGCAGCTTAAGACTCGAACAAAATCTAGTGACTGATCAGACCGCCAACATATGTTAGGTAAAAGATAACTAAAACCTTGTTGCTCTAGTGGAATAACAAATGCAAAATGGTTTTTTTGTTAGCCTTTAATGAATGTAATTAGCTAAGGACAATGTAAATATACTTATCTTTCAATGGATGTAACCGTTTTGATTGGCAAGGATGAGGAAAAGCTCATGGAACCAGATCAAACCTATATGCAGGGAACGAGTCAAGTTTGAGTGTGAGCCTTGTAAATTTCAGATTCCAACAATCAATCATGTTGGATAGTGAACTTTGAAGAAATTAGAAAGTGATCATCCATTACCCAAAATTAGATAGTTTATGCCCCACACTTCAACAGGTACTGAAGGAGTAAATGATTTTTTTTGCGATAATGGAGGTATCTGGTTACCTAGCAAGGCAAGCCCCAAAGACAAGGATATGGAGTCCTTATTATTAAATGTAGCATGGAAATGTAATTCATGTTGGAATTTGAGGGGTAAAATTGCTGCTCAAGGTCCACTGAGATCAATTGCTTGAGTCAAACATCCATGAATAAGATCTTAAAGTCAAATGCCACTAGCTGTTGTCAATTCTTGCCTGAGTTATTTATTATCCTTTGCATGGAAAACCTACTAGCGTTCCTCATTTGTTGATCTTTTAAATATATAACACTTGGTACTGTAAATAAAGTAATATTCTTTCTGATTTTTTTCTTAATCTTTTTTCTTAAGATGTTGGCTTGAATAGGTGCTTCTGTATTTTTCATTAGTTGGTATTGGATGTGAACAATTCATTGTACTTAGACTCTGATGTTTGTGATTGCAGGAGAATATAAAACGTTGTGTCTGCATAATCTATGATCCTTCTAGATCCAACCAAGGTGTCTTAGCTTTGAAAGCCTTGAAGCTTTCTGATTCTTTCATGGAACTCTACAAGAGTAACAACTTTACTGGAGAGAAGTATGTTTATTCTCGAGTTGCTCCTTTTTTACATTCCCTCTCGAAATAGTTGTTGGTACTAGTTTAAGTAAAAGTAAACTCATTTTAATTTCTGATATTTGTTTTTTGGTTTTAGGCTGAGAGAAAAGAATCTTTCATGGGTTGACATCTTTGAAGAGATACCA</genome_strand>
        <mrna_strand>CTCGTCTCCTCACTTTATTCCTCCAGCAATTAGGGTTTTGGA---T---TTTGCTTCTTGTAGAATTGCTCCGAAGTCGAGAAGCTTCGGATTCAGTCAATTTTCTGCTCAATTTCTATCATCATGGCAAATC...............................................................................................CTACAGGAAGGTCGTTTTTGCAAGTGGCAGCTACAGAGGAGGCTGTTGCGCCGCCACTCAGAGTTGTTCAGATTGAAGGACTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTTTGAAAATAATAAAGCATTGCCAGGAGTTTTCACCGGCTTTGGTCACTGGGCAACTCCTTGGATTGGATGTTGGGAGTGTTCTTGAAGTCACTAACTGTTTTCCCTTTCCG........................................................................................GTTCGCGAGGAAGATGAGGAGATTGAAGCCGAGGGTGCTAATTATCAACTTGAAATGATGCGATGCCTGAGGGAGGTTAATGTTGACAACAACACCGTGGGTTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCAATCAACTTTGTTTGGTTCTTATCAGACAGTGGAACTGATAGAGACCTTCATGAATTACCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAATATAAAACGTTGTGTCTGCATAATTTATGATCCTTCTAGATCCAACCAAGGTGTCTTAGCTTTGAAAGCCTTGAAGCTTTCTGATTCTTTCATGGAACTCTACAAGAGTAACAACTTTACTGGAGAGAA...................................................................................................................GCTGAGAGAAAAGAATCTTTCATGGGTTGACATCTTTGAAGAGATACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E343254" ref_strand="+" ref_description="SGN-E343254 [cTOF-17-I16]">
      <seq>caattagggttttggattttggatttgcttcttgtggaattgctccgaagtcgagaagcttcggattcagtcaattttctgctcaatttctatcatcatggcaaatcctacaggacggtcgtttttgcaagtggcagctacagaggaggctgttgcgccaccactcagagttgttcagattgaaggactggttattttgaaaataatcaagcattgccaagagttttcaccggctttggtcactggacaactccttggattggatgttggaagtgttcttgaagtcactaactgttttccttttccggttcgcgaggaagatgaggagattgaagccgagggtgctaattatcaacttgaaatgatgcgatgcctgagggaggttaatgttgacaacaacaccgttggttggtatcaatcaactttgtttggttcatatcagacagtggaactgatagagaccttcatgaattaccaggagaatataaaacgttgtgtctgcataatctatgatccttctagatccaccaaggtgtcttagctttgaaagccttgaagctttctgattctttcatggaactcntacagagtaacaactntactggagagaagctgagagaaaagaatctttcatgggttgacatctttgaagagataccaaataaagtttcaaattctgcactcattagtgcctttatgactgaattggaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="+" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="119298" stop="124608"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119598" g_stop="119704" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119705" i_stop="119799" i_length="95">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119800" g_stop="119882" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="190" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119883" i_stop="121393" i_length="1511">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.610" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121394" g_stop="121510" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="307" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121511" i_stop="121598" i_length="88">
            <donor d_prob="0.838" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121599" g_stop="121702" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="411" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121703" i_stop="122260" i_length="558">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="122261" g_stop="122327" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="478" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="122328" i_stop="123522" i_length="1195">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="123523" g_stop="123656" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="611" r_length="133" r_score="0.963"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="123657" i_stop="123771" i_length="115">
            <donor d_prob="0.949" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="123772" g_stop="123820" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="612" r_stop="660" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="123821" i_stop="124255" i_length="435">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.780" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="124256" g_stop="124308" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="661" r_stop="713" r_length="53" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="+" ref_id="SGN-E343254" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343254" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119598" e_stop="119704"/>
          <exon e_start="119800" e_stop="119882"/>
          <exon e_start="121394" e_stop="121510"/>
          <exon e_start="121599" e_stop="121702"/>
          <exon e_start="122261" e_stop="122327"/>
          <exon e_start="123523" e_stop="123656"/>
          <exon e_start="123772" e_stop="123820"/>
          <exon e_start="124256" e_stop="124308"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTAGGGTTTTGGATTTTGGATTTGCTTCTTGTGGAATTGCTCCGAAGTCGAGAAGCTTCGGATTCAGTCAATTTTCTGCTCAATTTCTATCATCATGGCAAATCGTACGCATAATTTTCCTTATTTGATTCTTTGCGAGGAATTTTTTGGGTACAATATGTGTAGTTAGCGATTAACCCCTTCAATTTGATTGATACAGCTACAGGACGGTCGTTTTTGCAAGTGGCAGCTACAGAGGAGGCTGTTGCGCCACCACTCAGAGTTGTTCAGATTGAAGGACTGGTACTATGCACTACTATCTATCTCTTTTTTTGTTTTTAGTATCTGTGCTGTCCGGGTCAGCTTATATGTGATTCCTGGGGTATCGGGTGCCTGATACATCCCATTGTGCTAAACGGGTAACTATGTCCACCAAGGTTTGGACAGGTGTGAAAAGATCAGCTTTGTGTTTTTCTTTGGGGGAATTGAACTTGATACGTGATAGTTCCGTACACACTTTATTCACCTCTAGGTTCACCAATAGGTGTACTATCTCTTCATTTTTTAAAAAAAGATTTTTTTTTTGTTTATGTGTATTTAGTTTGTGGAATCATAGATTAAGAAGTTGAGATTTCAATTGAAGCTCAAGAGCTACCTAGTTAGGTTCAGTGACAATCCCAGAAATCCAACTCAAAAGTAGAAACAAAAGGAAAAGAACTGAGTGATCTCTTGCCCTAATGGGGTGGTTTGCAGTCTTCTTGAAAATCAAGTTTCGAATCCCAGAACAGAGAATAATAGGTGAATTGTTACCTCTGCCTAAACTTGGGTGGATTTGATGTTTCTTCCCTGATGGGAGGTAGCATGTACCCTGTGTGTTAGCTTGCTCTTACTAATTTCACTGATGCTAACTGAACTAGCTACCACAACTTCCTGCTAATTGCCTAACTATAGCTGCATATTAGGCTATTAGCTCTTCTATTCCCCAACTATTGTTTGATATGCTGACCTTTCTCCTGTTCTTTCCTCCATATTCTTTAGATTATTTTTTTAGTTATTTATGCATCTGTACCATCCTTGTTGTTTACCCTTTGTTCACAAGAATGACCATTTGGCAAGAATACTTTTCGTCTAAACCATGAGTTATGCAATCAATCCTCAATGTCAATTGCTGCATTACCTTTAACCTTGATGTCTCCTACAAAATAATGTAGATAATTTCTTTGCAAGGATCAAACAAATTATACCCTGCATGCATACATTGCACCCACATAGTTGATAGAATTGTAGTCATCCCAAACTCTGCAAGAGGGGTACAAAAGACTCACAAGCAAAAGAGGGTGAAACAGCCAATTGATGTAAGGAGCAAGATTGTGGGATGAACTTGCTGCAACTACTTAGCCGTACTTGTCTGTTATTTGTTGTTTCTAACAGCATCATTGTGAAAAGTTAGTTCATAGACTAGTAGAGGTTCTTAAGTATCCCGGGCATGCAGAGTTCTTCCTTCTACTGATGTTAGCTTCTGCAACTTTCTTCTATTGAGAAAGGTGGAGCATCAAACCTTTTTCTTTTGATTTAAGTGGACACACTATTTTGGACAAACCACAAGGCATAGTTGGACATGTAAAAAGGGATCAAAGGAGTAATATTAATTTATGCCCTTAATTTTGTATTACAATGTTCCAAGAGATGTGACGTTGCACAGCAATGGGTGGGAAAAAAGTGATTTGTTCTATCTTCTTAGAGTAATAAAATGTATCTGCATCCGTTGACTGCCTTCTCATGTGTAGTTTCCTGAAGTTAACTCTGTAATACAGGTTATTTTGAAAATAATCAAGCATTGCCAAGAGTTTTCACCGGCTTTGGTCACTGGACAACTCCTTGGATTGGATGTTGGAAGTGTTCTTGAAGTCACTAACTGTTTTCCTTTTCCGGTATGGTGAAGTCTGGTGTTTCTTGCTTCTTCTTTATACAGTTTCGATATTATTTGAACTAACTCTTTTTCACATCTATTTTACTCAGGTTCGCGAGGAAGATGAGGAGATTGAAGCCGAGGGTGCTAATTATCAACTTGAAATGATGCGATGCCTGAGGGAGGTTAATGTTGACAACAACACCGTTGGTTGGTAAGAGAGCTTTTTGACTATTAAGCCATCATTTAATCTGGTTAGAACTATGAGGTTCCTTCTTTCTAATTAAGAAATTATTTTTGTCTTTGTGCTAGTTCTCTATTATACTCATTGCTAACCTTTTATTCAGGCAAACATTCTTTTTCTGGGCTGGTGGTACTGTGTGATATGCATTTTCTTTCATCACTATTTCATTTATATTTAAGTATAAACATCTTTTTTCTTGAAATGCTTAGAATATGTATATCTATACCCTTAAGTCTAGAAATGGACAATGTACGACATTTGATGGCCTGATTGCATTTCCGCAGCCTAAAAAGTTACAGTGTTTAAATTTTGCCAGCTCCAAGGCAGTGAAGAGAAAGTTATTATCAAAAAAGGGAGTAACAAAACTGTCATACATGTTAACAATAATAAAACTGTCTTACTTGTTACACAGTAGTGAGAAAGACATGAAAAGCTTGCTCTACCTTTCTTTCCTACATAATTGTCATCTTAACTTTTACTATTACTAATTTGCTCATAATATGGACCTCATTGATGGTTATTTTCCAGGTATCAATCAACTTTGTTTGGTTCATATCAGACAGTGGAACTGATAGAGACCTTCATGAATTACCAGGTATCCATCTCTATGTCCATCTCTCATTGTTGGATTCTGAACTTTCAGTTTCTGCAGCGACCTTAGGTATACTGCACTTATCCTGCAAGTCATTTTCAGTTTAGATAATGTCATGTGGCAACCCCCTTTGTGCTGGCCCTAGGAAGAAAAGGGAGAAAGGATGAAATTAACAACACTGTAGAACTGTTTTTTGTAGTGATGCTAAATGAGTCCAAGGCATTCCAAACTGTGTTACCATTTTAGTAAAGTTTAAATACCTGGGCTCTATGCGTGATAGACCAGTGCATCATGCAAATGACCTGCAGATTAGCAAGACTAATGCCCTGAAGTTCTTTAACCACCCGTTTGCAGCTTAAGACTCGAACAAAATCTAGTGACTGATCAGACCGCCAACATATGTTAGGTAAAAGATAACTAAAACCTTGTTGCTCTAGTGGAATAACAAATGCAAAATGGTTTTTTTGTTAGCCTTTAATGAATGTAATTAGCTAAGGACAATGTAAATATACTTATCTTTCAATGGATGTAACCGTTTTGATTGGCAAGGATGAGGAAAAGCTCATGGAACCAGATCAAACCTATATGCAGGGAACGAGTCAAGTTTGAGTGTGAGCCTTGTAAATTTCAGATTCCAACAATCAATCATGTTGGATAGTGAACTTTGAAGAAATTAGAAAGTGATCATCCATTACCCAAAATTAGATAGTTTATGCCCCACACTTCAACAGGTACTGAAGGAGTAAATGATTTTTTTTGCGATAATGGAGGTATCTGGTTACCTAGCAAGGCAAGCCCCAAAGACAAGGATATGGAGTCCTTATTATTAAATGTAGCATGGAAATGTAATTCATGTTGGAATTTGAGGGGTAAAATTGCTGCTCAAGGTCCACTGAGATCAATTGCTTGAGTCAAACATCCATGAATAAGATCTTAAAGTCAAATGCCACTAGCTGTTGTCAATTCTTGCCTGAGTTATTTATTATCCTTTGCATGGAAAACCTACTAGCGTTCCTCATTTGTTGATCTTTTAAATATATAACACTTGGTACTGTAAATAAAGTAATATTCTTTCTGATTTTTTTCTTAATCTTTTTTCTTAAGATGTTGGCTTGAATAGGTGCTTCTGTATTTTTCATTAGTTGGTATTGGATGTGAACAATTCATTGTACTTAGACTCTGATGTTTGTGATTGCAGGAGAATATAAAACGTTGTGTCTGCATAATCTATGATCCTTCTAGATCCAACCAAGGTGTCTTAGCTTTGAAAGCCTTGAAGCTTTCTGATTCTTTCATGGAACTC-TACAAGAGTAACAACTTTACTGGAGAGAAGTATGTTTATTCTCGAGTTGCTCCTTTTTTACATTCCCTCTCGAAATAGTTGTTGGTACTAGTTTAAGTAAAAGTAAACTCATTTTAATTTCTGATATTTGTTTTTTGGTTTTAGGCTGAGAGAAAAGAATCTTTCATGGGTTGACATCTTTGAAGAGATACCAGTATGATTCTTCTAACCATTTGTATTCTGTTTTCTCTTTGGCACTTGCATCATCATATGTAGATTCTTTTTCAAGTGACATTCTCTGCTTCAAAACCTGTTACCATTCTGCATGTCAGAGACAGTTGTATTCGTTTGGAGATCGGTTGTTTGAGAAAATAAAAATATAGTTCTGATACATTAGCCTTTTTTCCCTAGGGGACCCTTTTTCTTTTTTCCTTCGTTGTGTTCTTGAAAATAGTTCTTCCTCCTTTAAGATTTGATACGTGCATTGCTGCCACACATTTTCTTGGTTTGAACATTATTTTGAGTAATACCATCATCATATAGTGATTCTACCTGCCTGGTGTTAGTATAGGTACATTGTTCATAGGTTAGTAATTCAGCAGAAGTCTTCAACTTTACTGCAGAAGTTAATTTCGTCTTTTTTTTACAGATAAAAGTTTCAAATTCTGCACTCATTAGTGCCTTTATGACTGAATTGGAACC</genome_strand>
        <mrna_strand>CAATTAGGGTTTTGGATTTTGGATTTGCTTCTTGTGGAATTGCTCCGAAGTCGAGAAGCTTCGGATTCAGTCAATTTTCTGCTCAATTTCTATCATCATGGCAAATC...............................................................................................CTACAGGACGGTCGTTTTTGCAAGTGGCAGCTACAGAGGAGGCTGTTGCGCCACCACTCAGAGTTGTTCAGATTGAAGGACTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTTTGAAAATAATCAAGCATTGCCAAGAGTTTTCACCGGCTTTGGTCACTGGACAACTCCTTGGATTGGATGTTGGAAGTGTTCTTGAAGTCACTAACTGTTTTCCTTTTCCG........................................................................................GTTCGCGAGGAAGATGAGGAGATTGAAGCCGAGGGTGCTAATTATCAACTTGAAATGATGCGATGCCTGAGGGAGGTTAATGTTGACAACAACACCGTTGGTTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCAATCAACTTTGTTTGGTTCATATCAGACAGTGGAACTGATAGAGACCTTCATGAATTACCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAATATAAAACGTTGTGTCTGCATAATCTATGATCCTTCTAGATCC-ACCAAGGTGTCTTAGCTTTGAAAGCCTTGAAGCTTTCTGATTCTTTCATGGAACTCNTAC-AGAGTAACAACTNTACTGGAGAGAA...................................................................................................................GCTGAGAGAAAAGAATCTTTCATGGGTTGACATCTTTGAAGAGATACCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAAAGTTTCAAATTCTGCACTCATTAGTGCCTTTATGACTGAATTGGAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E317283" ref_strand="+" ref_description="SGN-E317283 [cTOA-28-D6]">
      <seq>ttggattttggatttgcttcttgtggaattgctccgaagtcgagaagcttcggattcagtcaattttctgctcaatttctatcatcatggcaaatcctacaggacggtcgtttttgcaagtggcagctacagaggaggctgttgcgccaccactcagagttgttcagattgaaggactggttattttgaaaataatcaagcattgccaagagttttcaccggctttggtcactggacaactccttggattggatgttggaagtgttcttgaagtcactaactgttttccttttccggttcgcgaggaagatgaggagattgaagccgagggtgctaattatcaacttgaaatgatgcgatgcctgagggaggttaatgttgacaacaacaccgttggttggtatcaatcaactttgtttggttcatatcagacagtgggactgatagagaccttcatgaattaccaggagaatataaaacgttgtgtctgcataatctatgatccttctagatccaaccaaggtgtcttagcttttgaagccttgaagctttctgattctttcatggaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="+" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="119309" stop="123927"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119609" g_stop="119704" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119705" i_stop="119799" i_length="95">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119800" g_stop="119882" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="179" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119883" i_stop="121393" i_length="1511">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.610" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121394" g_stop="121510" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="296" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121511" i_stop="121598" i_length="88">
            <donor d_prob="0.838" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121599" g_stop="121702" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="400" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121703" i_stop="122260" i_length="558">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="122261" g_stop="122327" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="467" r_length="67" r_score="0.985"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="122328" i_stop="123522" i_length="1195">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="123523" g_stop="123627" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="572" r_length="105" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="+" ref_id="SGN-E317283" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317283" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119609" e_stop="119704"/>
          <exon e_start="119800" e_stop="119882"/>
          <exon e_start="121394" e_stop="121510"/>
          <exon e_start="121599" e_stop="121702"/>
          <exon e_start="122261" e_stop="122327"/>
          <exon e_start="123523" e_stop="123627"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGATTTTGGATTTGCTTCTTGTGGAATTGCTCCGAAGTCGAGAAGCTTCGGATTCAGTCAATTTTCTGCTCAATTTCTATCATCATGGCAAATCGTACGCATAATTTTCCTTATTTGATTCTTTGCGAGGAATTTTTTGGGTACAATATGTGTAGTTAGCGATTAACCCCTTCAATTTGATTGATACAGCTACAGGACGGTCGTTTTTGCAAGTGGCAGCTACAGAGGAGGCTGTTGCGCCACCACTCAGAGTTGTTCAGATTGAAGGACTGGTACTATGCACTACTATCTATCTCTTTTTTTGTTTTTAGTATCTGTGCTGTCCGGGTCAGCTTATATGTGATTCCTGGGGTATCGGGTGCCTGATACATCCCATTGTGCTAAACGGGTAACTATGTCCACCAAGGTTTGGACAGGTGTGAAAAGATCAGCTTTGTGTTTTTCTTTGGGGGAATTGAACTTGATACGTGATAGTTCCGTACACACTTTATTCACCTCTAGGTTCACCAATAGGTGTACTATCTCTTCATTTTTTAAAAAAAGATTTTTTTTTTGTTTATGTGTATTTAGTTTGTGGAATCATAGATTAAGAAGTTGAGATTTCAATTGAAGCTCAAGAGCTACCTAGTTAGGTTCAGTGACAATCCCAGAAATCCAACTCAAAAGTAGAAACAAAAGGAAAAGAACTGAGTGATCTCTTGCCCTAATGGGGTGGTTTGCAGTCTTCTTGAAAATCAAGTTTCGAATCCCAGAACAGAGAATAATAGGTGAATTGTTACCTCTGCCTAAACTTGGGTGGATTTGATGTTTCTTCCCTGATGGGAGGTAGCATGTACCCTGTGTGTTAGCTTGCTCTTACTAATTTCACTGATGCTAACTGAACTAGCTACCACAACTTCCTGCTAATTGCCTAACTATAGCTGCATATTAGGCTATTAGCTCTTCTATTCCCCAACTATTGTTTGATATGCTGACCTTTCTCCTGTTCTTTCCTCCATATTCTTTAGATTATTTTTTTAGTTATTTATGCATCTGTACCATCCTTGTTGTTTACCCTTTGTTCACAAGAATGACCATTTGGCAAGAATACTTTTCGTCTAAACCATGAGTTATGCAATCAATCCTCAATGTCAATTGCTGCATTACCTTTAACCTTGATGTCTCCTACAAAATAATGTAGATAATTTCTTTGCAAGGATCAAACAAATTATACCCTGCATGCATACATTGCACCCACATAGTTGATAGAATTGTAGTCATCCCAAACTCTGCAAGAGGGGTACAAAAGACTCACAAGCAAAAGAGGGTGAAACAGCCAATTGATGTAAGGAGCAAGATTGTGGGATGAACTTGCTGCAACTACTTAGCCGTACTTGTCTGTTATTTGTTGTTTCTAACAGCATCATTGTGAAAAGTTAGTTCATAGACTAGTAGAGGTTCTTAAGTATCCCGGGCATGCAGAGTTCTTCCTTCTACTGATGTTAGCTTCTGCAACTTTCTTCTATTGAGAAAGGTGGAGCATCAAACCTTTTTCTTTTGATTTAAGTGGACACACTATTTTGGACAAACCACAAGGCATAGTTGGACATGTAAAAAGGGATCAAAGGAGTAATATTAATTTATGCCCTTAATTTTGTATTACAATGTTCCAAGAGATGTGACGTTGCACAGCAATGGGTGGGAAAAAAGTGATTTGTTCTATCTTCTTAGAGTAATAAAATGTATCTGCATCCGTTGACTGCCTTCTCATGTGTAGTTTCCTGAAGTTAACTCTGTAATACAGGTTATTTTGAAAATAATCAAGCATTGCCAAGAGTTTTCACCGGCTTTGGTCACTGGACAACTCCTTGGATTGGATGTTGGAAGTGTTCTTGAAGTCACTAACTGTTTTCCTTTTCCGGTATGGTGAAGTCTGGTGTTTCTTGCTTCTTCTTTATACAGTTTCGATATTATTTGAACTAACTCTTTTTCACATCTATTTTACTCAGGTTCGCGAGGAAGATGAGGAGATTGAAGCCGAGGGTGCTAATTATCAACTTGAAATGATGCGATGCCTGAGGGAGGTTAATGTTGACAACAACACCGTTGGTTGGTAAGAGAGCTTTTTGACTATTAAGCCATCATTTAATCTGGTTAGAACTATGAGGTTCCTTCTTTCTAATTAAGAAATTATTTTTGTCTTTGTGCTAGTTCTCTATTATACTCATTGCTAACCTTTTATTCAGGCAAACATTCTTTTTCTGGGCTGGTGGTACTGTGTGATATGCATTTTCTTTCATCACTATTTCATTTATATTTAAGTATAAACATCTTTTTTCTTGAAATGCTTAGAATATGTATATCTATACCCTTAAGTCTAGAAATGGACAATGTACGACATTTGATGGCCTGATTGCATTTCCGCAGCCTAAAAAGTTACAGTGTTTAAATTTTGCCAGCTCCAAGGCAGTGAAGAGAAAGTTATTATCAAAAAAGGGAGTAACAAAACTGTCATACATGTTAACAATAATAAAACTGTCTTACTTGTTACACAGTAGTGAGAAAGACATGAAAAGCTTGCTCTACCTTTCTTTCCTACATAATTGTCATCTTAACTTTTACTATTACTAATTTGCTCATAATATGGACCTCATTGATGGTTATTTTCCAGGTATCAATCAACTTTGTTTGGTTCATATCAGACAGTGGAACTGATAGAGACCTTCATGAATTACCAGGTATCCATCTCTATGTCCATCTCTCATTGTTGGATTCTGAACTTTCAGTTTCTGCAGCGACCTTAGGTATACTGCACTTATCCTGCAAGTCATTTTCAGTTTAGATAATGTCATGTGGCAACCCCCTTTGTGCTGGCCCTAGGAAGAAAAGGGAGAAAGGATGAAATTAACAACACTGTAGAACTGTTTTTTGTAGTGATGCTAAATGAGTCCAAGGCATTCCAAACTGTGTTACCATTTTAGTAAAGTTTAAATACCTGGGCTCTATGCGTGATAGACCAGTGCATCATGCAAATGACCTGCAGATTAGCAAGACTAATGCCCTGAAGTTCTTTAACCACCCGTTTGCAGCTTAAGACTCGAACAAAATCTAGTGACTGATCAGACCGCCAACATATGTTAGGTAAAAGATAACTAAAACCTTGTTGCTCTAGTGGAATAACAAATGCAAAATGGTTTTTTTGTTAGCCTTTAATGAATGTAATTAGCTAAGGACAATGTAAATATACTTATCTTTCAATGGATGTAACCGTTTTGATTGGCAAGGATGAGGAAAAGCTCATGGAACCAGATCAAACCTATATGCAGGGAACGAGTCAAGTTTGAGTGTGAGCCTTGTAAATTTCAGATTCCAACAATCAATCATGTTGGATAGTGAACTTTGAAGAAATTAGAAAGTGATCATCCATTACCCAAAATTAGATAGTTTATGCCCCACACTTCAACAGGTACTGAAGGAGTAAATGATTTTTTTTGCGATAATGGAGGTATCTGGTTACCTAGCAAGGCAAGCCCCAAAGACAAGGATATGGAGTCCTTATTATTAAATGTAGCATGGAAATGTAATTCATGTTGGAATTTGAGGGGTAAAATTGCTGCTCAAGGTCCACTGAGATCAATTGCTTGAGTCAAACATCCATGAATAAGATCTTAAAGTCAAATGCCACTAGCTGTTGTCAATTCTTGCCTGAGTTATTTATTATCCTTTGCATGGAAAACCTACTAGCGTTCCTCATTTGTTGATCTTTTAAATATATAACACTTGGTACTGTAAATAAAGTAATATTCTTTCTGATTTTTTTCTTAATCTTTTTTCTTAAGATGTTGGCTTGAATAGGTGCTTCTGTATTTTTCATTAGTTGGTATTGGATGTGAACAATTCATTGTACTTAGACTCTGATGTTTGTGATTGCAGGAGAATATAAAACGTTGTGTCTGCATAATCTATGATCCTTCTAGATCCAACCAAGGTGTCTTAGCTTTGAAAGCCTTGAAGCTTTCTGATTCTTTCATGGAACTC</genome_strand>
        <mrna_strand>TTGGATTTTGGATTTGCTTCTTGTGGAATTGCTCCGAAGTCGAGAAGCTTCGGATTCAGTCAATTTTCTGCTCAATTTCTATCATCATGGCAAATC...............................................................................................CTACAGGACGGTCGTTTTTGCAAGTGGCAGCTACAGAGGAGGCTGTTGCGCCACCACTCAGAGTTGTTCAGATTGAAGGACTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTTTGAAAATAATCAAGCATTGCCAAGAGTTTTCACCGGCTTTGGTCACTGGACAACTCCTTGGATTGGATGTTGGAAGTGTTCTTGAAGTCACTAACTGTTTTCCTTTTCCG........................................................................................GTTCGCGAGGAAGATGAGGAGATTGAAGCCGAGGGTGCTAATTATCAACTTGAAATGATGCGATGCCTGAGGGAGGTTAATGTTGACAACAACACCGTTGGTTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCAATCAACTTTGTTTGGTTCATATCAGACAGTGGGACTGATAGAGACCTTCATGAATTACCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAATATAAAACGTTGTGTCTGCATAATCTATGATCCTTCTAGATCCAACCAAGGTGTCTTAGCTTTTGAAGCCTTGAAGCTTTCTGATTCTTTCATGGAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E440266" ref_strand="+" ref_description="SGN-E440266 [cSTA-16-K23]">
      <seq>agggttttggattttgcttcttgtagaattgctccgaagtcgagaagctttggattcagtcaattttctgctcaatttctatcatcatggcaaatcctacaggacggtcgtttttgcaagtggcagctacagaggaggctgttgcgccgccactcagagttgttcagattgaaggactggttattttgaaaataataaagcattgccaggagttttcaccggctttggtcactgggcaactccctggattggatgttgggagtgttcttgaagtcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="+" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="119311" stop="121792"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119610" g_stop="119704" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="0.937"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119705" i_stop="119799" i_length="95">
            <donor d_prob="0.964" d_score="0.98"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119800" g_stop="119882" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="179" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119883" i_stop="121393" i_length="1511">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.610" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121394" g_stop="121492" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="278" r_length="99" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="+" ref_id="SGN-E440266" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>277</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E440266" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119610" e_stop="119704"/>
          <exon e_start="119800" e_stop="119882"/>
          <exon e_start="121394" e_stop="121492"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGATTTTGGA-TTTGCTTCTTGTGGAATTGCTCCGAAGTCGAGAAGCTTCGGATTCAGTCAATTTTCTGCTCAATTTCTATCATCATGGCAAATCGTACGCATAATTTTCCTTATTTGATTCTTTGCGAGGAATTTTTTGGGTACAATATGTGTAGTTAGCGATTAACCCCTTCAATTTGATTGATACAGCTACAGGACGGTCGTTTTTGCAAGTGGCAGCTACAGAGGAGGCTGTTGCGCCACCACTCAGAGTTGTTCAGATTGAAGGACTGGTACTATGCACTACTATCTATCTCTTTTTTTGTTTTTAGTATCTGTGCTGTCCGGGTCAGCTTATATGTGATTCCTGGGGTATCGGGTGCCTGATACATCCCATTGTGCTAAACGGGTAACTATGTCCACCAAGGTTTGGACAGGTGTGAAAAGATCAGCTTTGTGTTTTTCTTTGGGGGAATTGAACTTGATACGTGATAGTTCCGTACACACTTTATTCACCTCTAGGTTCACCAATAGGTGTACTATCTCTTCATTTTTTAAAAAAAGATTTTTTTTTTGTTTATGTGTATTTAGTTTGTGGAATCATAGATTAAGAAGTTGAGATTTCAATTGAAGCTCAAGAGCTACCTAGTTAGGTTCAGTGACAATCCCAGAAATCCAACTCAAAAGTAGAAACAAAAGGAAAAGAACTGAGTGATCTCTTGCCCTAATGGGGTGGTTTGCAGTCTTCTTGAAAATCAAGTTTCGAATCCCAGAACAGAGAATAATAGGTGAATTGTTACCTCTGCCTAAACTTGGGTGGATTTGATGTTTCTTCCCTGATGGGAGGTAGCATGTACCCTGTGTGTTAGCTTGCTCTTACTAATTTCACTGATGCTAACTGAACTAGCTACCACAACTTCCTGCTAATTGCCTAACTATAGCTGCATATTAGGCTATTAGCTCTTCTATTCCCCAACTATTGTTTGATATGCTGACCTTTCTCCTGTTCTTTCCTCCATATTCTTTAGATTATTTTTTTAGTTATTTATGCATCTGTACCATCCTTGTTGTTTACCCTTTGTTCACAAGAATGACCATTTGGCAAGAATACTTTTCGTCTAAACCATGAGTTATGCAATCAATCCTCAATGTCAATTGCTGCATTACCTTTAACCTTGATGTCTCCTACAAAATAATGTAGATAATTTCTTTGCAAGGATCAAACAAATTATACCCTGCATGCATACATTGCACCCACATAGTTGATAGAATTGTAGTCATCCCAAACTCTGCAAGAGGGGTACAAAAGACTCACAAGCAAAAGAGGGTGAAACAGCCAATTGATGTAAGGAGCAAGATTGTGGGATGAACTTGCTGCAACTACTTAGCCGTACTTGTCTGTTATTTGTTGTTTCTAACAGCATCATTGTGAAAAGTTAGTTCATAGACTAGTAGAGGTTCTTAAGTATCCCGGGCATGCAGAGTTCTTCCTTCTACTGATGTTAGCTTCTGCAACTTTCTTCTATTGAGAAAGGTGGAGCATCAAACCTTTTTCTTTTGATTTAAGTGGACACACTATTTTGGACAAACCACAAGGCATAGTTGGACATGTAAAAAGGGATCAAAGGAGTAATATTAATTTATGCCCTTAATTTTGTATTACAATGTTCCAAGAGATGTGACGTTGCACAGCAATGGGTGGGAAAAAAGTGATTTGTTCTATCTTCTTAGAGTAATAAAATGTATCTGCATCCGTTGACTGCCTTCTCATGTGTAGTTTCCTGAAGTTAACTCTGTAATACAGGTTATTTTGAAAATAATCAAGCATTGCCAAGAGTTTTCACCGGCTTTGGTCACTGGACAACTCCTTGGATTGGATGTTGGAAGTGTTCTTGAAGTCACT</genome_strand>
        <mrna_strand>AGGGTTTTGGATTTTGCTTCTTGTAGAATTGCTCCGAAGTCGAGAAGCTTTGGATTCAGTCAATTTTCTGCTCAATTTCTATCATCATGGCAAATC...............................................................................................CTACAGGACGGTCGTTTTTGCAAGTGGCAGCTACAGAGGAGGCTGTTGCGCCGCCACTCAGAGTTGTTCAGATTGAAGGACTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTTTGAAAATAATAAAGCATTGCCAGGAGTTTTCACCGGCTTTGGTCACTGGGCAACTCCCTGGATTGGATGTTGGGAGTGTTCTTGAAGTCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E482958" ref_strand="+" ref_description="SGN-E482958 [cSTE-6-M17]">
      <seq>gggttttggattttgcttcttgtagaattgctccgaagtcgagaagcttcggattcagtcaattttctgctcaatttctatcatcatggcaaatcctacaggaaggtcgtttttgcaagtggcagctacagaggaggctgttgcgccgccactcagagttgttcagattgaaggactggttattttgaaaataataaagcattgccaggagttttcaccggctttggtcactgggcaactccttggattggatgttgggagtgttcttgaagtcactaactgttttccctttccggttcgcgaggaagatgaggagattgaagccgagggtgctaattatcaacttgaaatgatgcgatgcctgagggaggttaatgttgacaacaacaccgtgggttggtatcaatcaactttgtttggctcttatcagacagtggaactgatagagaccttcatgaattaccaggagaatataaaacgctgtgtctgcataatttatgatccttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="+" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="119311" stop="123864"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119611" g_stop="119704" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119705" i_stop="119799" i_length="95">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119800" g_stop="119882" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="178" r_length="83" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119883" i_stop="121393" i_length="1511">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.610" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121394" g_stop="121510" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="295" r_length="117" r_score="0.957"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121511" i_stop="121598" i_length="88">
            <donor d_prob="0.838" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121599" g_stop="121702" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="399" r_length="104" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121703" i_stop="122260" i_length="558">
            <donor d_prob="0.962" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="122261" g_stop="122327" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="466" r_length="67" r_score="0.970"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="122328" i_stop="123522" i_length="1195">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="123523" g_stop="123564" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="508" r_length="42" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="+" ref_id="SGN-E482958" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E482958" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119611" e_stop="119704"/>
          <exon e_start="119800" e_stop="119882"/>
          <exon e_start="121394" e_stop="121510"/>
          <exon e_start="121599" e_stop="121702"/>
          <exon e_start="122261" e_stop="122327"/>
          <exon e_start="123523" e_stop="123564"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATTTTGGATT-TGCTTCTTGTGGAATTGCTCCGAAGTCGAGAAGCTTCGGATTCAGTCAATTTTCTGCTCAATTTCTATCATCATGGCAAATCGTACGCATAATTTTCCTTATTTGATTCTTTGCGAGGAATTTTTTGGGTACAATATGTGTAGTTAGCGATTAACCCCTTCAATTTGATTGATACAGCTACAGGACGGTCGTTTTTGCAAGTGGCAGCTACAGAGGAGGCTGTTGCGCCACCACTCAGAGTTGTTCAGATTGAAGGACTGGTACTATGCACTACTATCTATCTCTTTTTTTGTTTTTAGTATCTGTGCTGTCCGGGTCAGCTTATATGTGATTCCTGGGGTATCGGGTGCCTGATACATCCCATTGTGCTAAACGGGTAACTATGTCCACCAAGGTTTGGACAGGTGTGAAAAGATCAGCTTTGTGTTTTTCTTTGGGGGAATTGAACTTGATACGTGATAGTTCCGTACACACTTTATTCACCTCTAGGTTCACCAATAGGTGTACTATCTCTTCATTTTTTAAAAAAAGATTTTTTTTTTGTTTATGTGTATTTAGTTTGTGGAATCATAGATTAAGAAGTTGAGATTTCAATTGAAGCTCAAGAGCTACCTAGTTAGGTTCAGTGACAATCCCAGAAATCCAACTCAAAAGTAGAAACAAAAGGAAAAGAACTGAGTGATCTCTTGCCCTAATGGGGTGGTTTGCAGTCTTCTTGAAAATCAAGTTTCGAATCCCAGAACAGAGAATAATAGGTGAATTGTTACCTCTGCCTAAACTTGGGTGGATTTGATGTTTCTTCCCTGATGGGAGGTAGCATGTACCCTGTGTGTTAGCTTGCTCTTACTAATTTCACTGATGCTAACTGAACTAGCTACCACAACTTCCTGCTAATTGCCTAACTATAGCTGCATATTAGGCTATTAGCTCTTCTATTCCCCAACTATTGTTTGATATGCTGACCTTTCTCCTGTTCTTTCCTCCATATTCTTTAGATTATTTTTTTAGTTATTTATGCATCTGTACCATCCTTGTTGTTTACCCTTTGTTCACAAGAATGACCATTTGGCAAGAATACTTTTCGTCTAAACCATGAGTTATGCAATCAATCCTCAATGTCAATTGCTGCATTACCTTTAACCTTGATGTCTCCTACAAAATAATGTAGATAATTTCTTTGCAAGGATCAAACAAATTATACCCTGCATGCATACATTGCACCCACATAGTTGATAGAATTGTAGTCATCCCAAACTCTGCAAGAGGGGTACAAAAGACTCACAAGCAAAAGAGGGTGAAACAGCCAATTGATGTAAGGAGCAAGATTGTGGGATGAACTTGCTGCAACTACTTAGCCGTACTTGTCTGTTATTTGTTGTTTCTAACAGCATCATTGTGAAAAGTTAGTTCATAGACTAGTAGAGGTTCTTAAGTATCCCGGGCATGCAGAGTTCTTCCTTCTACTGATGTTAGCTTCTGCAACTTTCTTCTATTGAGAAAGGTGGAGCATCAAACCTTTTTCTTTTGATTTAAGTGGACACACTATTTTGGACAAACCACAAGGCATAGTTGGACATGTAAAAAGGGATCAAAGGAGTAATATTAATTTATGCCCTTAATTTTGTATTACAATGTTCCAAGAGATGTGACGTTGCACAGCAATGGGTGGGAAAAAAGTGATTTGTTCTATCTTCTTAGAGTAATAAAATGTATCTGCATCCGTTGACTGCCTTCTCATGTGTAGTTTCCTGAAGTTAACTCTGTAATACAGGTTATTTTGAAAATAATCAAGCATTGCCAAGAGTTTTCACCGGCTTTGGTCACTGGACAACTCCTTGGATTGGATGTTGGAAGTGTTCTTGAAGTCACTAACTGTTTTCCTTTTCCGGTATGGTGAAGTCTGGTGTTTCTTGCTTCTTCTTTATACAGTTTCGATATTATTTGAACTAACTCTTTTTCACATCTATTTTACTCAGGTTCGCGAGGAAGATGAGGAGATTGAAGCCGAGGGTGCTAATTATCAACTTGAAATGATGCGATGCCTGAGGGAGGTTAATGTTGACAACAACACCGTTGGTTGGTAAGAGAGCTTTTTGACTATTAAGCCATCATTTAATCTGGTTAGAACTATGAGGTTCCTTCTTTCTAATTAAGAAATTATTTTTGTCTTTGTGCTAGTTCTCTATTATACTCATTGCTAACCTTTTATTCAGGCAAACATTCTTTTTCTGGGCTGGTGGTACTGTGTGATATGCATTTTCTTTCATCACTATTTCATTTATATTTAAGTATAAACATCTTTTTTCTTGAAATGCTTAGAATATGTATATCTATACCCTTAAGTCTAGAAATGGACAATGTACGACATTTGATGGCCTGATTGCATTTCCGCAGCCTAAAAAGTTACAGTGTTTAAATTTTGCCAGCTCCAAGGCAGTGAAGAGAAAGTTATTATCAAAAAAGGGAGTAACAAAACTGTCATACATGTTAACAATAATAAAACTGTCTTACTTGTTACACAGTAGTGAGAAAGACATGAAAAGCTTGCTCTACCTTTCTTTCCTACATAATTGTCATCTTAACTTTTACTATTACTAATTTGCTCATAATATGGACCTCATTGATGGTTATTTTCCAGGTATCAATCAACTTTGTTTGGTTCATATCAGACAGTGGAACTGATAGAGACCTTCATGAATTACCAGGTATCCATCTCTATGTCCATCTCTCATTGTTGGATTCTGAACTTTCAGTTTCTGCAGCGACCTTAGGTATACTGCACTTATCCTGCAAGTCATTTTCAGTTTAGATAATGTCATGTGGCAACCCCCTTTGTGCTGGCCCTAGGAAGAAAAGGGAGAAAGGATGAAATTAACAACACTGTAGAACTGTTTTTTGTAGTGATGCTAAATGAGTCCAAGGCATTCCAAACTGTGTTACCATTTTAGTAAAGTTTAAATACCTGGGCTCTATGCGTGATAGACCAGTGCATCATGCAAATGACCTGCAGATTAGCAAGACTAATGCCCTGAAGTTCTTTAACCACCCGTTTGCAGCTTAAGACTCGAACAAAATCTAGTGACTGATCAGACCGCCAACATATGTTAGGTAAAAGATAACTAAAACCTTGTTGCTCTAGTGGAATAACAAATGCAAAATGGTTTTTTTGTTAGCCTTTAATGAATGTAATTAGCTAAGGACAATGTAAATATACTTATCTTTCAATGGATGTAACCGTTTTGATTGGCAAGGATGAGGAAAAGCTCATGGAACCAGATCAAACCTATATGCAGGGAACGAGTCAAGTTTGAGTGTGAGCCTTGTAAATTTCAGATTCCAACAATCAATCATGTTGGATAGTGAACTTTGAAGAAATTAGAAAGTGATCATCCATTACCCAAAATTAGATAGTTTATGCCCCACACTTCAACAGGTACTGAAGGAGTAAATGATTTTTTTTGCGATAATGGAGGTATCTGGTTACCTAGCAAGGCAAGCCCCAAAGACAAGGATATGGAGTCCTTATTATTAAATGTAGCATGGAAATGTAATTCATGTTGGAATTTGAGGGGTAAAATTGCTGCTCAAGGTCCACTGAGATCAATTGCTTGAGTCAAACATCCATGAATAAGATCTTAAAGTCAAATGCCACTAGCTGTTGTCAATTCTTGCCTGAGTTATTTATTATCCTTTGCATGGAAAACCTACTAGCGTTCCTCATTTGTTGATCTTTTAAATATATAACACTTGGTACTGTAAATAAAGTAATATTCTTTCTGATTTTTTTCTTAATCTTTTTTCTTAAGATGTTGGCTTGAATAGGTGCTTCTGTATTTTTCATTAGTTGGTATTGGATGTGAACAATTCATTGTACTTAGACTCTGATGTTTGTGATTGCAGGAGAATATAAAACGTTGTGTCTGCATAATCTATGATCCTTCT</genome_strand>
        <mrna_strand>GGGTTTTGGATTTTGCTTCTTGTAGAATTGCTCCGAAGTCGAGAAGCTTCGGATTCAGTCAATTTTCTGCTCAATTTCTATCATCATGGCAAATC...............................................................................................CTACAGGAAGGTCGTTTTTGCAAGTGGCAGCTACAGAGGAGGCTGTTGCGCCGCCACTCAGAGTTGTTCAGATTGAAGGACTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTTTGAAAATAATAAAGCATTGCCAGGAGTTTTCACCGGCTTTGGTCACTGGGCAACTCCTTGGATTGGATGTTGGGAGTGTTCTTGAAGTCACTAACTGTTTTCCCTTTCCG........................................................................................GTTCGCGAGGAAGATGAGGAGATTGAAGCCGAGGGTGCTAATTATCAACTTGAAATGATGCGATGCCTGAGGGAGGTTAATGTTGACAACAACACCGTGGGTTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCAATCAACTTTGTTTGGCTCTTATCAGACAGTGGAACTGATAGAGACCTTCATGAATTACCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAATATAAAACGCTGTGTCTGCATAATTTATGATCCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E482957" ref_strand="+" ref_description="SGN-E482957 [cSTE-6-M15]">
      <seq>gggttttggattttgcttcttgtagaattgctccgaagtcgagaaagcttcggattcagtcaattttctgctcaatttctatcatcatggcaaatcctacaggaaggtcgtttttgcaagtggcagctacagaggaggctgttgcgccgccactcagagttgttcagattgaaggactggttattttgaaaataataaagcattgccaggagttttcaccggctttggtcactgggcaactccttggattggatgttgggagtgttcttgaagtcactaactgttttccctttccggttcgcgaggaagatgaggagattgaagccgagggtgctaattatcaacttgaaatgatgcgatgcctgagggaggttaatgttgacaacaacaccgtgggttggtatcaatcaactttgtttggttcttatcagacagtggaactgatagagaccttcatgaattaccaggagaatataaaacgttgtgtctgcataattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="+" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="119311" stop="123854"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119611" g_stop="119704" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="0.936"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119705" i_stop="119799" i_length="95">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119800" g_stop="119882" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="179" r_length="83" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119883" i_stop="121393" i_length="1511">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.610" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121394" g_stop="121510" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="296" r_length="117" r_score="0.957"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121511" i_stop="121598" i_length="88">
            <donor d_prob="0.838" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121599" g_stop="121702" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="400" r_length="104" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121703" i_stop="122260" i_length="558">
            <donor d_prob="0.962" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="122261" g_stop="122327" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="467" r_length="67" r_score="0.985"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="122328" i_stop="123522" i_length="1195">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="123523" g_stop="123554" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="499" r_length="32" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="+" ref_id="SGN-E482957" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E482957" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119611" e_stop="119704"/>
          <exon e_start="119800" e_stop="119882"/>
          <exon e_start="121394" e_stop="121510"/>
          <exon e_start="121599" e_stop="121702"/>
          <exon e_start="122261" e_stop="122327"/>
          <exon e_start="123523" e_stop="123554"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATTTTGGATT-TGCTTCTTGTGGAATTGCTCCGAAGTCGAG-AAGCTTCGGATTCAGTCAATTTTCTGCTCAATTTCTATCATCATGGCAAATCGTACGCATAATTTTCCTTATTTGATTCTTTGCGAGGAATTTTTTGGGTACAATATGTGTAGTTAGCGATTAACCCCTTCAATTTGATTGATACAGCTACAGGACGGTCGTTTTTGCAAGTGGCAGCTACAGAGGAGGCTGTTGCGCCACCACTCAGAGTTGTTCAGATTGAAGGACTGGTACTATGCACTACTATCTATCTCTTTTTTTGTTTTTAGTATCTGTGCTGTCCGGGTCAGCTTATATGTGATTCCTGGGGTATCGGGTGCCTGATACATCCCATTGTGCTAAACGGGTAACTATGTCCACCAAGGTTTGGACAGGTGTGAAAAGATCAGCTTTGTGTTTTTCTTTGGGGGAATTGAACTTGATACGTGATAGTTCCGTACACACTTTATTCACCTCTAGGTTCACCAATAGGTGTACTATCTCTTCATTTTTTAAAAAAAGATTTTTTTTTTGTTTATGTGTATTTAGTTTGTGGAATCATAGATTAAGAAGTTGAGATTTCAATTGAAGCTCAAGAGCTACCTAGTTAGGTTCAGTGACAATCCCAGAAATCCAACTCAAAAGTAGAAACAAAAGGAAAAGAACTGAGTGATCTCTTGCCCTAATGGGGTGGTTTGCAGTCTTCTTGAAAATCAAGTTTCGAATCCCAGAACAGAGAATAATAGGTGAATTGTTACCTCTGCCTAAACTTGGGTGGATTTGATGTTTCTTCCCTGATGGGAGGTAGCATGTACCCTGTGTGTTAGCTTGCTCTTACTAATTTCACTGATGCTAACTGAACTAGCTACCACAACTTCCTGCTAATTGCCTAACTATAGCTGCATATTAGGCTATTAGCTCTTCTATTCCCCAACTATTGTTTGATATGCTGACCTTTCTCCTGTTCTTTCCTCCATATTCTTTAGATTATTTTTTTAGTTATTTATGCATCTGTACCATCCTTGTTGTTTACCCTTTGTTCACAAGAATGACCATTTGGCAAGAATACTTTTCGTCTAAACCATGAGTTATGCAATCAATCCTCAATGTCAATTGCTGCATTACCTTTAACCTTGATGTCTCCTACAAAATAATGTAGATAATTTCTTTGCAAGGATCAAACAAATTATACCCTGCATGCATACATTGCACCCACATAGTTGATAGAATTGTAGTCATCCCAAACTCTGCAAGAGGGGTACAAAAGACTCACAAGCAAAAGAGGGTGAAACAGCCAATTGATGTAAGGAGCAAGATTGTGGGATGAACTTGCTGCAACTACTTAGCCGTACTTGTCTGTTATTTGTTGTTTCTAACAGCATCATTGTGAAAAGTTAGTTCATAGACTAGTAGAGGTTCTTAAGTATCCCGGGCATGCAGAGTTCTTCCTTCTACTGATGTTAGCTTCTGCAACTTTCTTCTATTGAGAAAGGTGGAGCATCAAACCTTTTTCTTTTGATTTAAGTGGACACACTATTTTGGACAAACCACAAGGCATAGTTGGACATGTAAAAAGGGATCAAAGGAGTAATATTAATTTATGCCCTTAATTTTGTATTACAATGTTCCAAGAGATGTGACGTTGCACAGCAATGGGTGGGAAAAAAGTGATTTGTTCTATCTTCTTAGAGTAATAAAATGTATCTGCATCCGTTGACTGCCTTCTCATGTGTAGTTTCCTGAAGTTAACTCTGTAATACAGGTTATTTTGAAAATAATCAAGCATTGCCAAGAGTTTTCACCGGCTTTGGTCACTGGACAACTCCTTGGATTGGATGTTGGAAGTGTTCTTGAAGTCACTAACTGTTTTCCTTTTCCGGTATGGTGAAGTCTGGTGTTTCTTGCTTCTTCTTTATACAGTTTCGATATTATTTGAACTAACTCTTTTTCACATCTATTTTACTCAGGTTCGCGAGGAAGATGAGGAGATTGAAGCCGAGGGTGCTAATTATCAACTTGAAATGATGCGATGCCTGAGGGAGGTTAATGTTGACAACAACACCGTTGGTTGGTAAGAGAGCTTTTTGACTATTAAGCCATCATTTAATCTGGTTAGAACTATGAGGTTCCTTCTTTCTAATTAAGAAATTATTTTTGTCTTTGTGCTAGTTCTCTATTATACTCATTGCTAACCTTTTATTCAGGCAAACATTCTTTTTCTGGGCTGGTGGTACTGTGTGATATGCATTTTCTTTCATCACTATTTCATTTATATTTAAGTATAAACATCTTTTTTCTTGAAATGCTTAGAATATGTATATCTATACCCTTAAGTCTAGAAATGGACAATGTACGACATTTGATGGCCTGATTGCATTTCCGCAGCCTAAAAAGTTACAGTGTTTAAATTTTGCCAGCTCCAAGGCAGTGAAGAGAAAGTTATTATCAAAAAAGGGAGTAACAAAACTGTCATACATGTTAACAATAATAAAACTGTCTTACTTGTTACACAGTAGTGAGAAAGACATGAAAAGCTTGCTCTACCTTTCTTTCCTACATAATTGTCATCTTAACTTTTACTATTACTAATTTGCTCATAATATGGACCTCATTGATGGTTATTTTCCAGGTATCAATCAACTTTGTTTGGTTCATATCAGACAGTGGAACTGATAGAGACCTTCATGAATTACCAGGTATCCATCTCTATGTCCATCTCTCATTGTTGGATTCTGAACTTTCAGTTTCTGCAGCGACCTTAGGTATACTGCACTTATCCTGCAAGTCATTTTCAGTTTAGATAATGTCATGTGGCAACCCCCTTTGTGCTGGCCCTAGGAAGAAAAGGGAGAAAGGATGAAATTAACAACACTGTAGAACTGTTTTTTGTAGTGATGCTAAATGAGTCCAAGGCATTCCAAACTGTGTTACCATTTTAGTAAAGTTTAAATACCTGGGCTCTATGCGTGATAGACCAGTGCATCATGCAAATGACCTGCAGATTAGCAAGACTAATGCCCTGAAGTTCTTTAACCACCCGTTTGCAGCTTAAGACTCGAACAAAATCTAGTGACTGATCAGACCGCCAACATATGTTAGGTAAAAGATAACTAAAACCTTGTTGCTCTAGTGGAATAACAAATGCAAAATGGTTTTTTTGTTAGCCTTTAATGAATGTAATTAGCTAAGGACAATGTAAATATACTTATCTTTCAATGGATGTAACCGTTTTGATTGGCAAGGATGAGGAAAAGCTCATGGAACCAGATCAAACCTATATGCAGGGAACGAGTCAAGTTTGAGTGTGAGCCTTGTAAATTTCAGATTCCAACAATCAATCATGTTGGATAGTGAACTTTGAAGAAATTAGAAAGTGATCATCCATTACCCAAAATTAGATAGTTTATGCCCCACACTTCAACAGGTACTGAAGGAGTAAATGATTTTTTTTGCGATAATGGAGGTATCTGGTTACCTAGCAAGGCAAGCCCCAAAGACAAGGATATGGAGTCCTTATTATTAAATGTAGCATGGAAATGTAATTCATGTTGGAATTTGAGGGGTAAAATTGCTGCTCAAGGTCCACTGAGATCAATTGCTTGAGTCAAACATCCATGAATAAGATCTTAAAGTCAAATGCCACTAGCTGTTGTCAATTCTTGCCTGAGTTATTTATTATCCTTTGCATGGAAAACCTACTAGCGTTCCTCATTTGTTGATCTTTTAAATATATAACACTTGGTACTGTAAATAAAGTAATATTCTTTCTGATTTTTTTCTTAATCTTTTTTCTTAAGATGTTGGCTTGAATAGGTGCTTCTGTATTTTTCATTAGTTGGTATTGGATGTGAACAATTCATTGTACTTAGACTCTGATGTTTGTGATTGCAGGAGAATATAAAACGTTGTGTCTGCATAATCTA</genome_strand>
        <mrna_strand>GGGTTTTGGATTTTGCTTCTTGTAGAATTGCTCCGAAGTCGAGAAAGCTTCGGATTCAGTCAATTTTCTGCTCAATTTCTATCATCATGGCAAATC...............................................................................................CTACAGGAAGGTCGTTTTTGCAAGTGGCAGCTACAGAGGAGGCTGTTGCGCCGCCACTCAGAGTTGTTCAGATTGAAGGACTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTTTGAAAATAATAAAGCATTGCCAGGAGTTTTCACCGGCTTTGGTCACTGGGCAACTCCTTGGATTGGATGTTGGGAGTGTTCTTGAAGTCACTAACTGTTTTCCCTTTCCG........................................................................................GTTCGCGAGGAAGATGAGGAGATTGAAGCCGAGGGTGCTAATTATCAACTTGAAATGATGCGATGCCTGAGGGAGGTTAATGTTGACAACAACACCGTGGGTTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCAATCAACTTTGTTTGGTTCTTATCAGACAGTGGAACTGATAGAGACCTTCATGAATTACCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAATATAAAACGTTGTGTCTGCATAATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E568761" ref_strand="+" ref_description="SGN-E568761 [13094]">
      <seq>gttttggattttgcttcttgtagaattgctccgaagtcgagaagcttcggattcagtcaattttctgctcaatttctatcatcatggcaaatcctacaggaaggtcgtttttgcaagtggcagctacagaggaggctgttgcgccgccactcagagttgttcagattgaaggactggttattttgaaaataataaagcattgccaggagttttcaccggctttggtcactgggcaactccttggattggatgttgggagtgttcttgaagtcactaactgttttccctttccggttcgcgaggaagatgaggagattgaagccgagggtgctaattatcaacttgaaatgatgcgatgcctgagggaggttaatgttgacaacaacaccgtgggttggtatcaatcaactttgtttggttcttatcaggacagtggaactgatagagaccttcatgaattaccaggagaatataaaacgttgtgtctgcataatttatgatccttctagatccaaccaaggtgtcttagctttgaaagccttgaagctttctgattctttcatggaactctacaaagagtaacaactttacttggagagaaagctgagagacaaagaatctttcatggggttgacatcctttgaagaagaatacccaattaaaagtttcggaattcttgcactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="+" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="119314" stop="124132"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119613" g_stop="119704" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119705" i_stop="119799" i_length="95">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119800" g_stop="119882" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="176" r_length="83" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119883" i_stop="121393" i_length="1511">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.610" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121394" g_stop="121510" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="293" r_length="117" r_score="0.957"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121511" i_stop="121598" i_length="88">
            <donor d_prob="0.838" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121599" g_stop="121702" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="397" r_length="104" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121703" i_stop="122260" i_length="558">
            <donor d_prob="0.962" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="122261" g_stop="122327" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="465" r_length="68" r_score="0.955"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="122328" i_stop="123522" i_length="1195">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="123523" g_stop="123656" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="601" r_length="136" r_score="0.963"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="123657" i_stop="123771" i_length="115">
            <donor d_prob="0.949" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.78"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="123772" g_stop="123820" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="602" r_stop="653" r_length="52" r_score="0.755"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="+" ref_id="SGN-E568761" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E568761" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119613" e_stop="119704"/>
          <exon e_start="119800" e_stop="119882"/>
          <exon e_start="121394" e_stop="121510"/>
          <exon e_start="121599" e_stop="121702"/>
          <exon e_start="122261" e_stop="122327"/>
          <exon e_start="123523" e_stop="123656"/>
          <exon e_start="123772" e_stop="123820"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTGGA-TTTGCTTCTTGTGGAATTGCTCCGAAGTCGAGAAGCTTCGGATTCAGTCAATTTTCTGCTCAATTTCTATCATCATGGCAAATCGTACGCATAATTTTCCTTATTTGATTCTTTGCGAGGAATTTTTTGGGTACAATATGTGTAGTTAGCGATTAACCCCTTCAATTTGATTGATACAGCTACAGGACGGTCGTTTTTGCAAGTGGCAGCTACAGAGGAGGCTGTTGCGCCACCACTCAGAGTTGTTCAGATTGAAGGACTGGTACTATGCACTACTATCTATCTCTTTTTTTGTTTTTAGTATCTGTGCTGTCCGGGTCAGCTTATATGTGATTCCTGGGGTATCGGGTGCCTGATACATCCCATTGTGCTAAACGGGTAACTATGTCCACCAAGGTTTGGACAGGTGTGAAAAGATCAGCTTTGTGTTTTTCTTTGGGGGAATTGAACTTGATACGTGATAGTTCCGTACACACTTTATTCACCTCTAGGTTCACCAATAGGTGTACTATCTCTTCATTTTTTAAAAAAAGATTTTTTTTTTGTTTATGTGTATTTAGTTTGTGGAATCATAGATTAAGAAGTTGAGATTTCAATTGAAGCTCAAGAGCTACCTAGTTAGGTTCAGTGACAATCCCAGAAATCCAACTCAAAAGTAGAAACAAAAGGAAAAGAACTGAGTGATCTCTTGCCCTAATGGGGTGGTTTGCAGTCTTCTTGAAAATCAAGTTTCGAATCCCAGAACAGAGAATAATAGGTGAATTGTTACCTCTGCCTAAACTTGGGTGGATTTGATGTTTCTTCCCTGATGGGAGGTAGCATGTACCCTGTGTGTTAGCTTGCTCTTACTAATTTCACTGATGCTAACTGAACTAGCTACCACAACTTCCTGCTAATTGCCTAACTATAGCTGCATATTAGGCTATTAGCTCTTCTATTCCCCAACTATTGTTTGATATGCTGACCTTTCTCCTGTTCTTTCCTCCATATTCTTTAGATTATTTTTTTAGTTATTTATGCATCTGTACCATCCTTGTTGTTTACCCTTTGTTCACAAGAATGACCATTTGGCAAGAATACTTTTCGTCTAAACCATGAGTTATGCAATCAATCCTCAATGTCAATTGCTGCATTACCTTTAACCTTGATGTCTCCTACAAAATAATGTAGATAATTTCTTTGCAAGGATCAAACAAATTATACCCTGCATGCATACATTGCACCCACATAGTTGATAGAATTGTAGTCATCCCAAACTCTGCAAGAGGGGTACAAAAGACTCACAAGCAAAAGAGGGTGAAACAGCCAATTGATGTAAGGAGCAAGATTGTGGGATGAACTTGCTGCAACTACTTAGCCGTACTTGTCTGTTATTTGTTGTTTCTAACAGCATCATTGTGAAAAGTTAGTTCATAGACTAGTAGAGGTTCTTAAGTATCCCGGGCATGCAGAGTTCTTCCTTCTACTGATGTTAGCTTCTGCAACTTTCTTCTATTGAGAAAGGTGGAGCATCAAACCTTTTTCTTTTGATTTAAGTGGACACACTATTTTGGACAAACCACAAGGCATAGTTGGACATGTAAAAAGGGATCAAAGGAGTAATATTAATTTATGCCCTTAATTTTGTATTACAATGTTCCAAGAGATGTGACGTTGCACAGCAATGGGTGGGAAAAAAGTGATTTGTTCTATCTTCTTAGAGTAATAAAATGTATCTGCATCCGTTGACTGCCTTCTCATGTGTAGTTTCCTGAAGTTAACTCTGTAATACAGGTTATTTTGAAAATAATCAAGCATTGCCAAGAGTTTTCACCGGCTTTGGTCACTGGACAACTCCTTGGATTGGATGTTGGAAGTGTTCTTGAAGTCACTAACTGTTTTCCTTTTCCGGTATGGTGAAGTCTGGTGTTTCTTGCTTCTTCTTTATACAGTTTCGATATTATTTGAACTAACTCTTTTTCACATCTATTTTACTCAGGTTCGCGAGGAAGATGAGGAGATTGAAGCCGAGGGTGCTAATTATCAACTTGAAATGATGCGATGCCTGAGGGAGGTTAATGTTGACAACAACACCGTTGGTTGGTAAGAGAGCTTTTTGACTATTAAGCCATCATTTAATCTGGTTAGAACTATGAGGTTCCTTCTTTCTAATTAAGAAATTATTTTTGTCTTTGTGCTAGTTCTCTATTATACTCATTGCTAACCTTTTATTCAGGCAAACATTCTTTTTCTGGGCTGGTGGTACTGTGTGATATGCATTTTCTTTCATCACTATTTCATTTATATTTAAGTATAAACATCTTTTTTCTTGAAATGCTTAGAATATGTATATCTATACCCTTAAGTCTAGAAATGGACAATGTACGACATTTGATGGCCTGATTGCATTTCCGCAGCCTAAAAAGTTACAGTGTTTAAATTTTGCCAGCTCCAAGGCAGTGAAGAGAAAGTTATTATCAAAAAAGGGAGTAACAAAACTGTCATACATGTTAACAATAATAAAACTGTCTTACTTGTTACACAGTAGTGAGAAAGACATGAAAAGCTTGCTCTACCTTTCTTTCCTACATAATTGTCATCTTAACTTTTACTATTACTAATTTGCTCATAATATGGACCTCATTGATGGTTATTTTCCAGGTATCAATCAACTTTGTTTGGTTCATATCA-GACAGTGGAACTGATAGAGACCTTCATGAATTACCAGGTATCCATCTCTATGTCCATCTCTCATTGTTGGATTCTGAACTTTCAGTTTCTGCAGCGACCTTAGGTATACTGCACTTATCCTGCAAGTCATTTTCAGTTTAGATAATGTCATGTGGCAACCCCCTTTGTGCTGGCCCTAGGAAGAAAAGGGAGAAAGGATGAAATTAACAACACTGTAGAACTGTTTTTTGTAGTGATGCTAAATGAGTCCAAGGCATTCCAAACTGTGTTACCATTTTAGTAAAGTTTAAATACCTGGGCTCTATGCGTGATAGACCAGTGCATCATGCAAATGACCTGCAGATTAGCAAGACTAATGCCCTGAAGTTCTTTAACCACCCGTTTGCAGCTTAAGACTCGAACAAAATCTAGTGACTGATCAGACCGCCAACATATGTTAGGTAAAAGATAACTAAAACCTTGTTGCTCTAGTGGAATAACAAATGCAAAATGGTTTTTTTGTTAGCCTTTAATGAATGTAATTAGCTAAGGACAATGTAAATATACTTATCTTTCAATGGATGTAACCGTTTTGATTGGCAAGGATGAGGAAAAGCTCATGGAACCAGATCAAACCTATATGCAGGGAACGAGTCAAGTTTGAGTGTGAGCCTTGTAAATTTCAGATTCCAACAATCAATCATGTTGGATAGTGAACTTTGAAGAAATTAGAAAGTGATCATCCATTACCCAAAATTAGATAGTTTATGCCCCACACTTCAACAGGTACTGAAGGAGTAAATGATTTTTTTTGCGATAATGGAGGTATCTGGTTACCTAGCAAGGCAAGCCCCAAAGACAAGGATATGGAGTCCTTATTATTAAATGTAGCATGGAAATGTAATTCATGTTGGAATTTGAGGGGTAAAATTGCTGCTCAAGGTCCACTGAGATCAATTGCTTGAGTCAAACATCCATGAATAAGATCTTAAAGTCAAATGCCACTAGCTGTTGTCAATTCTTGCCTGAGTTATTTATTATCCTTTGCATGGAAAACCTACTAGCGTTCCTCATTTGTTGATCTTTTAAATATATAACACTTGGTACTGTAAATAAAGTAATATTCTTTCTGATTTTTTTCTTAATCTTTTTTCTTAAGATGTTGGCTTGAATAGGTGCTTCTGTATTTTTCATTAGTTGGTATTGGATGTGAACAATTCATTGTACTTAGACTCTGATGTTTGTGATTGCAGGAGAATATAAAACGTTGTGTCTGCATAATCTATGATCCTTCTAGATCCAACCAAGGTGTCTTAGCTTTGAAAGCCTTGAAGCTTTCTGATTCTTTCATGGAACTCTAC-AAGAGTAACAACTTTAC-TGGAGAGAAGTATGTTTATTCTCGAGTTGCTCCTTTTTTACATTCCCTCTCGAAATAGTTGTTGGTACTAGTTTAAGTAAAAGTAAACTCATTTTAATTTCTGATATTTGTTTTTTGGTTTTAG-GCTGAGAGA-AAAGAATCTTTCAT-GGGTTGACAT-CTTTGAAGAGATACCA</genome_strand>
        <mrna_strand>GTTTTGGATTTTGCTTCTTGTAGAATTGCTCCGAAGTCGAGAAGCTTCGGATTCAGTCAATTTTCTGCTCAATTTCTATCATCATGGCAAATC...............................................................................................CTACAGGAAGGTCGTTTTTGCAAGTGGCAGCTACAGAGGAGGCTGTTGCGCCGCCACTCAGAGTTGTTCAGATTGAAGGACTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTTTGAAAATAATAAAGCATTGCCAGGAGTTTTCACCGGCTTTGGTCACTGGGCAACTCCTTGGATTGGATGTTGGGAGTGTTCTTGAAGTCACTAACTGTTTTCCCTTTCCG........................................................................................GTTCGCGAGGAAGATGAGGAGATTGAAGCCGAGGGTGCTAATTATCAACTTGAAATGATGCGATGCCTGAGGGAGGTTAATGTTGACAACAACACCGTGGGTTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCAATCAACTTTGTTTGGTTCTTATCAGGACAGTGGAACTGATAGAGACCTTCATGAATTACCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAATATAAAACGTTGTGTCTGCATAATTTATGATCCTTCTAGATCCAACCAAGGTGTCTTAGCTTTGAAAGCCTTGAAGCTTTCTGATTCTTTCATGGAACTCTACAAAGAGTAACAACTTTACTTGGAGAGAA...................................................................................................................AGCTGAGAGACAAAGAATCTTTCATGGGGTTGACATCCTTTGAAGA-AGAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E601376" ref_strand="+" ref_description="SGN-E601376 [54413]">
      <seq>tttggattttgcttcttgtagaattgctccgaagtcgatgaagcttcggattcagtcaattttctgctcaatttctatcatcatggcaaatcctacaggaaggtcgtttttgcaagtggcagctacagaggaggctgttgcgccgccactcagagttgttcagattgaaggactggttattttgaaaataataaagcattgccaggagttttcaccggcttcggtcactgggcaactccttggattggatgttgggagtgttcttgaagtcactaactgttttccctttccggttcgcgaggaagatgaggagattgaagccgagggtgctaattatcaacttgaaatgatgcgatgcctgagggaggttaatgttgacaacaacaccgtgggttggtatcaatcaactttgtttggttcttatcagacagtggaactgatagagaccttcatgaattaccaggagaatataaaacgttgtgtctgcataatttatgatccttctagatccaaccaaggtgtcttagctttgaaagccttgaagctttctgattctttcatggaactctacaagagtaacaactttactggagagaagctgagagaaaagaatcttgcatgggttgacatctttgaagagataccaataacagtttcgaattctgcactcattagtgccttaatgactgaattggaacccgatacacctgtaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="+" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="119315" stop="124623"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119615" g_stop="119704" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119705" i_stop="119799" i_length="95">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119800" g_stop="119882" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="175" r_length="83" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119883" i_stop="121393" i_length="1511">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.610" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121394" g_stop="121510" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="292" r_length="117" r_score="0.949"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121511" i_stop="121598" i_length="88">
            <donor d_prob="0.838" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121599" g_stop="121702" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="396" r_length="104" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121703" i_stop="122260" i_length="558">
            <donor d_prob="0.962" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="122261" g_stop="122327" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="463" r_length="67" r_score="0.985"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="122328" i_stop="123522" i_length="1195">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="123523" g_stop="123656" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="597" r_length="134" r_score="0.993"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="123657" i_stop="123771" i_length="115">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="123772" g_stop="123820" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="598" r_stop="646" r_length="49" r_score="0.980"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="123821" i_stop="124255" i_length="435">
            <donor d_prob="0.938" d_score="0.98"/>
            <acceptor a_prob="0.780" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="124256" g_stop="124323" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="647" r_stop="714" r_length="68" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="+" ref_id="SGN-E601376" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E601376" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119615" e_stop="119704"/>
          <exon e_start="119800" e_stop="119882"/>
          <exon e_start="121394" e_stop="121510"/>
          <exon e_start="121599" e_stop="121702"/>
          <exon e_start="122261" e_stop="122327"/>
          <exon e_start="123523" e_stop="123656"/>
          <exon e_start="123772" e_stop="123820"/>
          <exon e_start="124256" e_stop="124323"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGA-TTTGCTTCTTGTGGAATTGCTCCGAAGTCGA-GAAGCTTCGGATTCAGTCAATTTTCTGCTCAATTTCTATCATCATGGCAAATCGTACGCATAATTTTCCTTATTTGATTCTTTGCGAGGAATTTTTTGGGTACAATATGTGTAGTTAGCGATTAACCCCTTCAATTTGATTGATACAGCTACAGGACGGTCGTTTTTGCAAGTGGCAGCTACAGAGGAGGCTGTTGCGCCACCACTCAGAGTTGTTCAGATTGAAGGACTGGTACTATGCACTACTATCTATCTCTTTTTTTGTTTTTAGTATCTGTGCTGTCCGGGTCAGCTTATATGTGATTCCTGGGGTATCGGGTGCCTGATACATCCCATTGTGCTAAACGGGTAACTATGTCCACCAAGGTTTGGACAGGTGTGAAAAGATCAGCTTTGTGTTTTTCTTTGGGGGAATTGAACTTGATACGTGATAGTTCCGTACACACTTTATTCACCTCTAGGTTCACCAATAGGTGTACTATCTCTTCATTTTTTAAAAAAAGATTTTTTTTTTGTTTATGTGTATTTAGTTTGTGGAATCATAGATTAAGAAGTTGAGATTTCAATTGAAGCTCAAGAGCTACCTAGTTAGGTTCAGTGACAATCCCAGAAATCCAACTCAAAAGTAGAAACAAAAGGAAAAGAACTGAGTGATCTCTTGCCCTAATGGGGTGGTTTGCAGTCTTCTTGAAAATCAAGTTTCGAATCCCAGAACAGAGAATAATAGGTGAATTGTTACCTCTGCCTAAACTTGGGTGGATTTGATGTTTCTTCCCTGATGGGAGGTAGCATGTACCCTGTGTGTTAGCTTGCTCTTACTAATTTCACTGATGCTAACTGAACTAGCTACCACAACTTCCTGCTAATTGCCTAACTATAGCTGCATATTAGGCTATTAGCTCTTCTATTCCCCAACTATTGTTTGATATGCTGACCTTTCTCCTGTTCTTTCCTCCATATTCTTTAGATTATTTTTTTAGTTATTTATGCATCTGTACCATCCTTGTTGTTTACCCTTTGTTCACAAGAATGACCATTTGGCAAGAATACTTTTCGTCTAAACCATGAGTTATGCAATCAATCCTCAATGTCAATTGCTGCATTACCTTTAACCTTGATGTCTCCTACAAAATAATGTAGATAATTTCTTTGCAAGGATCAAACAAATTATACCCTGCATGCATACATTGCACCCACATAGTTGATAGAATTGTAGTCATCCCAAACTCTGCAAGAGGGGTACAAAAGACTCACAAGCAAAAGAGGGTGAAACAGCCAATTGATGTAAGGAGCAAGATTGTGGGATGAACTTGCTGCAACTACTTAGCCGTACTTGTCTGTTATTTGTTGTTTCTAACAGCATCATTGTGAAAAGTTAGTTCATAGACTAGTAGAGGTTCTTAAGTATCCCGGGCATGCAGAGTTCTTCCTTCTACTGATGTTAGCTTCTGCAACTTTCTTCTATTGAGAAAGGTGGAGCATCAAACCTTTTTCTTTTGATTTAAGTGGACACACTATTTTGGACAAACCACAAGGCATAGTTGGACATGTAAAAAGGGATCAAAGGAGTAATATTAATTTATGCCCTTAATTTTGTATTACAATGTTCCAAGAGATGTGACGTTGCACAGCAATGGGTGGGAAAAAAGTGATTTGTTCTATCTTCTTAGAGTAATAAAATGTATCTGCATCCGTTGACTGCCTTCTCATGTGTAGTTTCCTGAAGTTAACTCTGTAATACAGGTTATTTTGAAAATAATCAAGCATTGCCAAGAGTTTTCACCGGCTTTGGTCACTGGACAACTCCTTGGATTGGATGTTGGAAGTGTTCTTGAAGTCACTAACTGTTTTCCTTTTCCGGTATGGTGAAGTCTGGTGTTTCTTGCTTCTTCTTTATACAGTTTCGATATTATTTGAACTAACTCTTTTTCACATCTATTTTACTCAGGTTCGCGAGGAAGATGAGGAGATTGAAGCCGAGGGTGCTAATTATCAACTTGAAATGATGCGATGCCTGAGGGAGGTTAATGTTGACAACAACACCGTTGGTTGGTAAGAGAGCTTTTTGACTATTAAGCCATCATTTAATCTGGTTAGAACTATGAGGTTCCTTCTTTCTAATTAAGAAATTATTTTTGTCTTTGTGCTAGTTCTCTATTATACTCATTGCTAACCTTTTATTCAGGCAAACATTCTTTTTCTGGGCTGGTGGTACTGTGTGATATGCATTTTCTTTCATCACTATTTCATTTATATTTAAGTATAAACATCTTTTTTCTTGAAATGCTTAGAATATGTATATCTATACCCTTAAGTCTAGAAATGGACAATGTACGACATTTGATGGCCTGATTGCATTTCCGCAGCCTAAAAAGTTACAGTGTTTAAATTTTGCCAGCTCCAAGGCAGTGAAGAGAAAGTTATTATCAAAAAAGGGAGTAACAAAACTGTCATACATGTTAACAATAATAAAACTGTCTTACTTGTTACACAGTAGTGAGAAAGACATGAAAAGCTTGCTCTACCTTTCTTTCCTACATAATTGTCATCTTAACTTTTACTATTACTAATTTGCTCATAATATGGACCTCATTGATGGTTATTTTCCAGGTATCAATCAACTTTGTTTGGTTCATATCAGACAGTGGAACTGATAGAGACCTTCATGAATTACCAGGTATCCATCTCTATGTCCATCTCTCATTGTTGGATTCTGAACTTTCAGTTTCTGCAGCGACCTTAGGTATACTGCACTTATCCTGCAAGTCATTTTCAGTTTAGATAATGTCATGTGGCAACCCCCTTTGTGCTGGCCCTAGGAAGAAAAGGGAGAAAGGATGAAATTAACAACACTGTAGAACTGTTTTTTGTAGTGATGCTAAATGAGTCCAAGGCATTCCAAACTGTGTTACCATTTTAGTAAAGTTTAAATACCTGGGCTCTATGCGTGATAGACCAGTGCATCATGCAAATGACCTGCAGATTAGCAAGACTAATGCCCTGAAGTTCTTTAACCACCCGTTTGCAGCTTAAGACTCGAACAAAATCTAGTGACTGATCAGACCGCCAACATATGTTAGGTAAAAGATAACTAAAACCTTGTTGCTCTAGTGGAATAACAAATGCAAAATGGTTTTTTTGTTAGCCTTTAATGAATGTAATTAGCTAAGGACAATGTAAATATACTTATCTTTCAATGGATGTAACCGTTTTGATTGGCAAGGATGAGGAAAAGCTCATGGAACCAGATCAAACCTATATGCAGGGAACGAGTCAAGTTTGAGTGTGAGCCTTGTAAATTTCAGATTCCAACAATCAATCATGTTGGATAGTGAACTTTGAAGAAATTAGAAAGTGATCATCCATTACCCAAAATTAGATAGTTTATGCCCCACACTTCAACAGGTACTGAAGGAGTAAATGATTTTTTTTGCGATAATGGAGGTATCTGGTTACCTAGCAAGGCAAGCCCCAAAGACAAGGATATGGAGTCCTTATTATTAAATGTAGCATGGAAATGTAATTCATGTTGGAATTTGAGGGGTAAAATTGCTGCTCAAGGTCCACTGAGATCAATTGCTTGAGTCAAACATCCATGAATAAGATCTTAAAGTCAAATGCCACTAGCTGTTGTCAATTCTTGCCTGAGTTATTTATTATCCTTTGCATGGAAAACCTACTAGCGTTCCTCATTTGTTGATCTTTTAAATATATAACACTTGGTACTGTAAATAAAGTAATATTCTTTCTGATTTTTTTCTTAATCTTTTTTCTTAAGATGTTGGCTTGAATAGGTGCTTCTGTATTTTTCATTAGTTGGTATTGGATGTGAACAATTCATTGTACTTAGACTCTGATGTTTGTGATTGCAGGAGAATATAAAACGTTGTGTCTGCATAATCTATGATCCTTCTAGATCCAACCAAGGTGTCTTAGCTTTGAAAGCCTTGAAGCTTTCTGATTCTTTCATGGAACTCTACAAGAGTAACAACTTTACTGGAGAGAAGTATGTTTATTCTCGAGTTGCTCCTTTTTTACATTCCCTCTCGAAATAGTTGTTGGTACTAGTTTAAGTAAAAGTAAACTCATTTTAATTTCTGATATTTGTTTTTTGGTTTTAGGCTGAGAGAAAAGAATCTTTCATGGGTTGACATCTTTGAAGAGATACCAGTATGATTCTTCTAACCATTTGTATTCTGTTTTCTCTTTGGCACTTGCATCATCATATGTAGATTCTTTTTCAAGTGACATTCTCTGCTTCAAAACCTGTTACCATTCTGCATGTCAGAGACAGTTGTATTCGTTTGGAGATCGGTTGTTTGAGAAAATAAAAATATAGTTCTGATACATTAGCCTTTTTTCCCTAGGGGACCCTTTTTCTTTTTTCCTTCGTTGTGTTCTTGAAAATAGTTCTTCCTCCTTTAAGATTTGATACGTGCATTGCTGCCACACATTTTCTTGGTTTGAACATTATTTTGAGTAATACCATCATCATATAGTGATTCTACCTGCCTGGTGTTAGTATAGGTACATTGTTCATAGGTTAGTAATTCAGCAGAAGTCTTCAACTTTACTGCAGAAGTTAATTTCGTCTTTTTTTTACAGATAAAAGTTTCAAATTCTGCACTCATTAGTGCCTTTATGACTGAATTGGAACCCGATACACCTGTAAC</genome_strand>
        <mrna_strand>TTTGGATTTTGCTTCTTGTAGAATTGCTCCGAAGTCGATGAAGCTTCGGATTCAGTCAATTTTCTGCTCAATTTCTATCATCATGGCAAATC...............................................................................................CTACAGGAAGGTCGTTTTTGCAAGTGGCAGCTACAGAGGAGGCTGTTGCGCCGCCACTCAGAGTTGTTCAGATTGAAGGACTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTTTGAAAATAATAAAGCATTGCCAGGAGTTTTCACCGGCTTCGGTCACTGGGCAACTCCTTGGATTGGATGTTGGGAGTGTTCTTGAAGTCACTAACTGTTTTCCCTTTCCG........................................................................................GTTCGCGAGGAAGATGAGGAGATTGAAGCCGAGGGTGCTAATTATCAACTTGAAATGATGCGATGCCTGAGGGAGGTTAATGTTGACAACAACACCGTGGGTTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCAATCAACTTTGTTTGGTTCTTATCAGACAGTGGAACTGATAGAGACCTTCATGAATTACCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAATATAAAACGTTGTGTCTGCATAATTTATGATCCTTCTAGATCCAACCAAGGTGTCTTAGCTTTGAAAGCCTTGAAGCTTTCTGATTCTTTCATGGAACTCTACAAGAGTAACAACTTTACTGGAGAGAA...................................................................................................................GCTGAGAGAAAAGAATCTTGCATGGGTTGACATCTTTGAAGAGATACCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAACAGTTTCGAATTCTGCACTCATTAGTGCCTTAATGACTGAATTGGAACCCGATACACCTGTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E560398" ref_strand="+" ref_description="SGN-E560398 [20045]">
      <seq>tttggattttgcttcttgtagaattgctccgaagtcgagaagcttcggattcagtcaattttctgcccaatttctatcatcatggcaaatcctacaggaaggtcgtttttgcaagtggcagctacagaggaggctgttgcgccgccactcagagttgttcagattgaaggactggttattttgaaaataataaagcattgccaggagttttcaccggctttggtcactgggcaactccttggattggatgttgggagtgttcttgaagtcactaactgttttccctttccggttcgcgaggaagatgaggagattgaagccgagggtgctaattatcaacttgaaatgatgcgatgcctgagggaggttaatgttgacaacaacaccgtgggttggtatcaatcaactttgtttggttcttatcagacagtggaactgatagagaccttcatgaattaccaggagaatattaaacgttgtgtctgtataatctatgatccttctagatccaaccaaggtgtcttagctttgaaagccttgaagctttctgattctttcatggaactctacaagagtaacaactttactggggagaagctgagagaaaagaatctttcatgggttgacatctttgaagagataccaaataaaagtttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="+" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="119315" stop="124120"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119615" g_stop="119704" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119705" i_stop="119799" i_length="95">
            <donor d_prob="0.964" d_score="0.98"/>
            <acceptor a_prob="0.975" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119800" g_stop="119882" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="174" r_length="83" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119883" i_stop="121393" i_length="1511">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.610" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121394" g_stop="121510" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="291" r_length="117" r_score="0.957"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121511" i_stop="121598" i_length="88">
            <donor d_prob="0.838" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121599" g_stop="121702" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="395" r_length="104" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121703" i_stop="122260" i_length="558">
            <donor d_prob="0.962" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="122261" g_stop="122327" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="462" r_length="67" r_score="0.985"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="122328" i_stop="123522" i_length="1195">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="123523" g_stop="123656" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="596" r_length="134" r_score="0.978"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="123657" i_stop="123771" i_length="115">
            <donor d_prob="0.949" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="123772" g_stop="123820" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="597" r_stop="645" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="+" ref_id="SGN-E560398" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E560398" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119615" e_stop="119704"/>
          <exon e_start="119800" e_stop="119882"/>
          <exon e_start="121394" e_stop="121510"/>
          <exon e_start="121599" e_stop="121702"/>
          <exon e_start="122261" e_stop="122327"/>
          <exon e_start="123523" e_stop="123656"/>
          <exon e_start="123772" e_stop="123820"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGA-TTTGCTTCTTGTGGAATTGCTCCGAAGTCGAGAAGCTTCGGATTCAGTCAATTTTCTGCTCAATTTCTATCATCATGGCAAATCGTACGCATAATTTTCCTTATTTGATTCTTTGCGAGGAATTTTTTGGGTACAATATGTGTAGTTAGCGATTAACCCCTTCAATTTGATTGATACAGCTACAGGACGGTCGTTTTTGCAAGTGGCAGCTACAGAGGAGGCTGTTGCGCCACCACTCAGAGTTGTTCAGATTGAAGGACTGGTACTATGCACTACTATCTATCTCTTTTTTTGTTTTTAGTATCTGTGCTGTCCGGGTCAGCTTATATGTGATTCCTGGGGTATCGGGTGCCTGATACATCCCATTGTGCTAAACGGGTAACTATGTCCACCAAGGTTTGGACAGGTGTGAAAAGATCAGCTTTGTGTTTTTCTTTGGGGGAATTGAACTTGATACGTGATAGTTCCGTACACACTTTATTCACCTCTAGGTTCACCAATAGGTGTACTATCTCTTCATTTTTTAAAAAAAGATTTTTTTTTTGTTTATGTGTATTTAGTTTGTGGAATCATAGATTAAGAAGTTGAGATTTCAATTGAAGCTCAAGAGCTACCTAGTTAGGTTCAGTGACAATCCCAGAAATCCAACTCAAAAGTAGAAACAAAAGGAAAAGAACTGAGTGATCTCTTGCCCTAATGGGGTGGTTTGCAGTCTTCTTGAAAATCAAGTTTCGAATCCCAGAACAGAGAATAATAGGTGAATTGTTACCTCTGCCTAAACTTGGGTGGATTTGATGTTTCTTCCCTGATGGGAGGTAGCATGTACCCTGTGTGTTAGCTTGCTCTTACTAATTTCACTGATGCTAACTGAACTAGCTACCACAACTTCCTGCTAATTGCCTAACTATAGCTGCATATTAGGCTATTAGCTCTTCTATTCCCCAACTATTGTTTGATATGCTGACCTTTCTCCTGTTCTTTCCTCCATATTCTTTAGATTATTTTTTTAGTTATTTATGCATCTGTACCATCCTTGTTGTTTACCCTTTGTTCACAAGAATGACCATTTGGCAAGAATACTTTTCGTCTAAACCATGAGTTATGCAATCAATCCTCAATGTCAATTGCTGCATTACCTTTAACCTTGATGTCTCCTACAAAATAATGTAGATAATTTCTTTGCAAGGATCAAACAAATTATACCCTGCATGCATACATTGCACCCACATAGTTGATAGAATTGTAGTCATCCCAAACTCTGCAAGAGGGGTACAAAAGACTCACAAGCAAAAGAGGGTGAAACAGCCAATTGATGTAAGGAGCAAGATTGTGGGATGAACTTGCTGCAACTACTTAGCCGTACTTGTCTGTTATTTGTTGTTTCTAACAGCATCATTGTGAAAAGTTAGTTCATAGACTAGTAGAGGTTCTTAAGTATCCCGGGCATGCAGAGTTCTTCCTTCTACTGATGTTAGCTTCTGCAACTTTCTTCTATTGAGAAAGGTGGAGCATCAAACCTTTTTCTTTTGATTTAAGTGGACACACTATTTTGGACAAACCACAAGGCATAGTTGGACATGTAAAAAGGGATCAAAGGAGTAATATTAATTTATGCCCTTAATTTTGTATTACAATGTTCCAAGAGATGTGACGTTGCACAGCAATGGGTGGGAAAAAAGTGATTTGTTCTATCTTCTTAGAGTAATAAAATGTATCTGCATCCGTTGACTGCCTTCTCATGTGTAGTTTCCTGAAGTTAACTCTGTAATACAGGTTATTTTGAAAATAATCAAGCATTGCCAAGAGTTTTCACCGGCTTTGGTCACTGGACAACTCCTTGGATTGGATGTTGGAAGTGTTCTTGAAGTCACTAACTGTTTTCCTTTTCCGGTATGGTGAAGTCTGGTGTTTCTTGCTTCTTCTTTATACAGTTTCGATATTATTTGAACTAACTCTTTTTCACATCTATTTTACTCAGGTTCGCGAGGAAGATGAGGAGATTGAAGCCGAGGGTGCTAATTATCAACTTGAAATGATGCGATGCCTGAGGGAGGTTAATGTTGACAACAACACCGTTGGTTGGTAAGAGAGCTTTTTGACTATTAAGCCATCATTTAATCTGGTTAGAACTATGAGGTTCCTTCTTTCTAATTAAGAAATTATTTTTGTCTTTGTGCTAGTTCTCTATTATACTCATTGCTAACCTTTTATTCAGGCAAACATTCTTTTTCTGGGCTGGTGGTACTGTGTGATATGCATTTTCTTTCATCACTATTTCATTTATATTTAAGTATAAACATCTTTTTTCTTGAAATGCTTAGAATATGTATATCTATACCCTTAAGTCTAGAAATGGACAATGTACGACATTTGATGGCCTGATTGCATTTCCGCAGCCTAAAAAGTTACAGTGTTTAAATTTTGCCAGCTCCAAGGCAGTGAAGAGAAAGTTATTATCAAAAAAGGGAGTAACAAAACTGTCATACATGTTAACAATAATAAAACTGTCTTACTTGTTACACAGTAGTGAGAAAGACATGAAAAGCTTGCTCTACCTTTCTTTCCTACATAATTGTCATCTTAACTTTTACTATTACTAATTTGCTCATAATATGGACCTCATTGATGGTTATTTTCCAGGTATCAATCAACTTTGTTTGGTTCATATCAGACAGTGGAACTGATAGAGACCTTCATGAATTACCAGGTATCCATCTCTATGTCCATCTCTCATTGTTGGATTCTGAACTTTCAGTTTCTGCAGCGACCTTAGGTATACTGCACTTATCCTGCAAGTCATTTTCAGTTTAGATAATGTCATGTGGCAACCCCCTTTGTGCTGGCCCTAGGAAGAAAAGGGAGAAAGGATGAAATTAACAACACTGTAGAACTGTTTTTTGTAGTGATGCTAAATGAGTCCAAGGCATTCCAAACTGTGTTACCATTTTAGTAAAGTTTAAATACCTGGGCTCTATGCGTGATAGACCAGTGCATCATGCAAATGACCTGCAGATTAGCAAGACTAATGCCCTGAAGTTCTTTAACCACCCGTTTGCAGCTTAAGACTCGAACAAAATCTAGTGACTGATCAGACCGCCAACATATGTTAGGTAAAAGATAACTAAAACCTTGTTGCTCTAGTGGAATAACAAATGCAAAATGGTTTTTTTGTTAGCCTTTAATGAATGTAATTAGCTAAGGACAATGTAAATATACTTATCTTTCAATGGATGTAACCGTTTTGATTGGCAAGGATGAGGAAAAGCTCATGGAACCAGATCAAACCTATATGCAGGGAACGAGTCAAGTTTGAGTGTGAGCCTTGTAAATTTCAGATTCCAACAATCAATCATGTTGGATAGTGAACTTTGAAGAAATTAGAAAGTGATCATCCATTACCCAAAATTAGATAGTTTATGCCCCACACTTCAACAGGTACTGAAGGAGTAAATGATTTTTTTTGCGATAATGGAGGTATCTGGTTACCTAGCAAGGCAAGCCCCAAAGACAAGGATATGGAGTCCTTATTATTAAATGTAGCATGGAAATGTAATTCATGTTGGAATTTGAGGGGTAAAATTGCTGCTCAAGGTCCACTGAGATCAATTGCTTGAGTCAAACATCCATGAATAAGATCTTAAAGTCAAATGCCACTAGCTGTTGTCAATTCTTGCCTGAGTTATTTATTATCCTTTGCATGGAAAACCTACTAGCGTTCCTCATTTGTTGATCTTTTAAATATATAACACTTGGTACTGTAAATAAAGTAATATTCTTTCTGATTTTTTTCTTAATCTTTTTTCTTAAGATGTTGGCTTGAATAGGTGCTTCTGTATTTTTCATTAGTTGGTATTGGATGTGAACAATTCATTGTACTTAGACTCTGATGTTTGTGATTGCAGGAGAATATAAAACGTTGTGTCTGCATAATCTATGATCCTTCTAGATCCAACCAAGGTGTCTTAGCTTTGAAAGCCTTGAAGCTTTCTGATTCTTTCATGGAACTCTACAAGAGTAACAACTTTACTGGAGAGAAGTATGTTTATTCTCGAGTTGCTCCTTTTTTACATTCCCTCTCGAAATAGTTGTTGGTACTAGTTTAAGTAAAAGTAAACTCATTTTAATTTCTGATATTTGTTTTTTGGTTTTAGGCTGAGAGAAAAGAATCTTTCATGGGTTGACATCTTTGAAGAGATACCA</genome_strand>
        <mrna_strand>TTTGGATTTTGCTTCTTGTAGAATTGCTCCGAAGTCGAGAAGCTTCGGATTCAGTCAATTTTCTGCCCAATTTCTATCATCATGGCAAATC...............................................................................................CTACAGGAAGGTCGTTTTTGCAAGTGGCAGCTACAGAGGAGGCTGTTGCGCCGCCACTCAGAGTTGTTCAGATTGAAGGACTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTTTGAAAATAATAAAGCATTGCCAGGAGTTTTCACCGGCTTTGGTCACTGGGCAACTCCTTGGATTGGATGTTGGGAGTGTTCTTGAAGTCACTAACTGTTTTCCCTTTCCG........................................................................................GTTCGCGAGGAAGATGAGGAGATTGAAGCCGAGGGTGCTAATTATCAACTTGAAATGATGCGATGCCTGAGGGAGGTTAATGTTGACAACAACACCGTGGGTTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCAATCAACTTTGTTTGGTTCTTATCAGACAGTGGAACTGATAGAGACCTTCATGAATTACCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAATATTAAACGTTGTGTCTGTATAATCTATGATCCTTCTAGATCCAACCAAGGTGTCTTAGCTTTGAAAGCCTTGAAGCTTTCTGATTCTTTCATGGAACTCTACAAGAGTAACAACTTTACTGGGGAGAA...................................................................................................................GCTGAGAGAAAAGAATCTTTCATGGGTTGACATCTTTGAAGAGATACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E470406" ref_strand="+" ref_description="SGN-E470406 [cSTB-18-I9]">
      <seq>ggattttgcttcttgtagaattgctccgaagtcgagaagcttcggattcagtcaattttctgctcaatttctatcatcatggcaaatcctacaggaaggtcgtttttgcaagtggcagctacagaggaggctgttgcgccgccactcagagttgttcagattgaaggactggttattttgaaaataataaagcattgccaggagttttcaccggctttggtcactgggcaactccttggattggatgttgggagtgttcttgaagtcactaactgttttccctttccggttcgcgaggaagatgaggagattgaagccgagggtgctaattatcaacttgaaatgatgcgatgcctgagggaggttaatgttgacaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="+" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="119318" stop="121989"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119618" g_stop="119704" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119705" i_stop="119799" i_length="95">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119800" g_stop="119882" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="171" r_length="83" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119883" i_stop="121393" i_length="1511">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.610" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121394" g_stop="121510" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="288" r_length="117" r_score="0.957"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121511" i_stop="121598" i_length="88">
            <donor d_prob="0.838" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121599" g_stop="121689" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="379" r_length="91" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="+" ref_id="SGN-E470406" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>378</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E470406" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119618" e_stop="119704"/>
          <exon e_start="119800" e_stop="119882"/>
          <exon e_start="121394" e_stop="121510"/>
          <exon e_start="121599" e_stop="121689"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGA-TTTGCTTCTTGTGGAATTGCTCCGAAGTCGAGAAGCTTCGGATTCAGTCAATTTTCTGCTCAATTTCTATCATCATGGCAAATCGTACGCATAATTTTCCTTATTTGATTCTTTGCGAGGAATTTTTTGGGTACAATATGTGTAGTTAGCGATTAACCCCTTCAATTTGATTGATACAGCTACAGGACGGTCGTTTTTGCAAGTGGCAGCTACAGAGGAGGCTGTTGCGCCACCACTCAGAGTTGTTCAGATTGAAGGACTGGTACTATGCACTACTATCTATCTCTTTTTTTGTTTTTAGTATCTGTGCTGTCCGGGTCAGCTTATATGTGATTCCTGGGGTATCGGGTGCCTGATACATCCCATTGTGCTAAACGGGTAACTATGTCCACCAAGGTTTGGACAGGTGTGAAAAGATCAGCTTTGTGTTTTTCTTTGGGGGAATTGAACTTGATACGTGATAGTTCCGTACACACTTTATTCACCTCTAGGTTCACCAATAGGTGTACTATCTCTTCATTTTTTAAAAAAAGATTTTTTTTTTGTTTATGTGTATTTAGTTTGTGGAATCATAGATTAAGAAGTTGAGATTTCAATTGAAGCTCAAGAGCTACCTAGTTAGGTTCAGTGACAATCCCAGAAATCCAACTCAAAAGTAGAAACAAAAGGAAAAGAACTGAGTGATCTCTTGCCCTAATGGGGTGGTTTGCAGTCTTCTTGAAAATCAAGTTTCGAATCCCAGAACAGAGAATAATAGGTGAATTGTTACCTCTGCCTAAACTTGGGTGGATTTGATGTTTCTTCCCTGATGGGAGGTAGCATGTACCCTGTGTGTTAGCTTGCTCTTACTAATTTCACTGATGCTAACTGAACTAGCTACCACAACTTCCTGCTAATTGCCTAACTATAGCTGCATATTAGGCTATTAGCTCTTCTATTCCCCAACTATTGTTTGATATGCTGACCTTTCTCCTGTTCTTTCCTCCATATTCTTTAGATTATTTTTTTAGTTATTTATGCATCTGTACCATCCTTGTTGTTTACCCTTTGTTCACAAGAATGACCATTTGGCAAGAATACTTTTCGTCTAAACCATGAGTTATGCAATCAATCCTCAATGTCAATTGCTGCATTACCTTTAACCTTGATGTCTCCTACAAAATAATGTAGATAATTTCTTTGCAAGGATCAAACAAATTATACCCTGCATGCATACATTGCACCCACATAGTTGATAGAATTGTAGTCATCCCAAACTCTGCAAGAGGGGTACAAAAGACTCACAAGCAAAAGAGGGTGAAACAGCCAATTGATGTAAGGAGCAAGATTGTGGGATGAACTTGCTGCAACTACTTAGCCGTACTTGTCTGTTATTTGTTGTTTCTAACAGCATCATTGTGAAAAGTTAGTTCATAGACTAGTAGAGGTTCTTAAGTATCCCGGGCATGCAGAGTTCTTCCTTCTACTGATGTTAGCTTCTGCAACTTTCTTCTATTGAGAAAGGTGGAGCATCAAACCTTTTTCTTTTGATTTAAGTGGACACACTATTTTGGACAAACCACAAGGCATAGTTGGACATGTAAAAAGGGATCAAAGGAGTAATATTAATTTATGCCCTTAATTTTGTATTACAATGTTCCAAGAGATGTGACGTTGCACAGCAATGGGTGGGAAAAAAGTGATTTGTTCTATCTTCTTAGAGTAATAAAATGTATCTGCATCCGTTGACTGCCTTCTCATGTGTAGTTTCCTGAAGTTAACTCTGTAATACAGGTTATTTTGAAAATAATCAAGCATTGCCAAGAGTTTTCACCGGCTTTGGTCACTGGACAACTCCTTGGATTGGATGTTGGAAGTGTTCTTGAAGTCACTAACTGTTTTCCTTTTCCGGTATGGTGAAGTCTGGTGTTTCTTGCTTCTTCTTTATACAGTTTCGATATTATTTGAACTAACTCTTTTTCACATCTATTTTACTCAGGTTCGCGAGGAAGATGAGGAGATTGAAGCCGAGGGTGCTAATTATCAACTTGAAATGATGCGATGCCTGAGGGAGGTTAATGTTGACAACA</genome_strand>
        <mrna_strand>GGATTTTGCTTCTTGTAGAATTGCTCCGAAGTCGAGAAGCTTCGGATTCAGTCAATTTTCTGCTCAATTTCTATCATCATGGCAAATC...............................................................................................CTACAGGAAGGTCGTTTTTGCAAGTGGCAGCTACAGAGGAGGCTGTTGCGCCGCCACTCAGAGTTGTTCAGATTGAAGGACTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTTTGAAAATAATAAAGCATTGCCAGGAGTTTTCACCGGCTTTGGTCACTGGGCAACTCCTTGGATTGGATGTTGGGAGTGTTCTTGAAGTCACTAACTGTTTTCCCTTTCCG........................................................................................GTTCGCGAGGAAGATGAGGAGATTGAAGCCGAGGGTGCTAATTATCAACTTGAAATGATGCGATGCCTGAGGGAGGTTAATGTTGACAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E448598" ref_strand="+" ref_description="SGN-E448598 [cSTS-3-N9]">
      <seq>tttgcttcttgtagaattgctccgaagtcgagaagcttcggattcagtcaattttctgctcaatttctatcatcatggcaaatcctacaggaaggtcgtttttgcaagtggcagctacagaggaggctgttgcgccgccactcagagttgttcagattgaaggactggttattttgaaaataataaagcattgccaggagttttcaccggctttggtcactgggcaactccttggattggatgttgggagtgttcttgaagtcactaactgttttccctttccggttcgcgaggaagatgaggagattgaagccgagggtgctaattatcaacttgaaatgatgcgatgcctgagggaggttaatgttgacaacaacaccgtgggttggtatcaatcaactttgtttggttcttatcagacagtggaactgatagagaccttcatgaattaccaggagaatataaaacgttgtgtctgcataatttatgatccttctagatccaaccaaggtgtcttagctttgaaagccttgaagctttctgattctttcatggaactctacaagagtaacaactttactggagagaagctgagagaaaagaatctttcatgggttgacatctttgaagagataccaattaaagtttcgaattctgcactcattagtgcctttatgactgaattggaacccgatacacctgtaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="+" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="119321" stop="124623"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119621" g_stop="119704" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119705" i_stop="119799" i_length="95">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119800" g_stop="119882" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="167" r_length="83" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119883" i_stop="121393" i_length="1511">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.610" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121394" g_stop="121510" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="284" r_length="117" r_score="0.957"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121511" i_stop="121598" i_length="88">
            <donor d_prob="0.838" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121599" g_stop="121702" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="388" r_length="104" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121703" i_stop="122260" i_length="558">
            <donor d_prob="0.962" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="122261" g_stop="122327" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="455" r_length="67" r_score="0.985"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="122328" i_stop="123522" i_length="1195">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="123523" g_stop="123656" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="589" r_length="134" r_score="0.993"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="123657" i_stop="123771" i_length="115">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="123772" g_stop="123820" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="590" r_stop="638" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="123821" i_stop="124255" i_length="435">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.780" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="124256" g_stop="124323" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="639" r_stop="706" r_length="68" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="+" ref_id="SGN-E448598" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E448598" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119621" e_stop="119704"/>
          <exon e_start="119800" e_stop="119882"/>
          <exon e_start="121394" e_stop="121510"/>
          <exon e_start="121599" e_stop="121702"/>
          <exon e_start="122261" e_stop="122327"/>
          <exon e_start="123523" e_stop="123656"/>
          <exon e_start="123772" e_stop="123820"/>
          <exon e_start="124256" e_stop="124323"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCTTCTTGTGGAATTGCTCCGAAGTCGAGAAGCTTCGGATTCAGTCAATTTTCTGCTCAATTTCTATCATCATGGCAAATCGTACGCATAATTTTCCTTATTTGATTCTTTGCGAGGAATTTTTTGGGTACAATATGTGTAGTTAGCGATTAACCCCTTCAATTTGATTGATACAGCTACAGGACGGTCGTTTTTGCAAGTGGCAGCTACAGAGGAGGCTGTTGCGCCACCACTCAGAGTTGTTCAGATTGAAGGACTGGTACTATGCACTACTATCTATCTCTTTTTTTGTTTTTAGTATCTGTGCTGTCCGGGTCAGCTTATATGTGATTCCTGGGGTATCGGGTGCCTGATACATCCCATTGTGCTAAACGGGTAACTATGTCCACCAAGGTTTGGACAGGTGTGAAAAGATCAGCTTTGTGTTTTTCTTTGGGGGAATTGAACTTGATACGTGATAGTTCCGTACACACTTTATTCACCTCTAGGTTCACCAATAGGTGTACTATCTCTTCATTTTTTAAAAAAAGATTTTTTTTTTGTTTATGTGTATTTAGTTTGTGGAATCATAGATTAAGAAGTTGAGATTTCAATTGAAGCTCAAGAGCTACCTAGTTAGGTTCAGTGACAATCCCAGAAATCCAACTCAAAAGTAGAAACAAAAGGAAAAGAACTGAGTGATCTCTTGCCCTAATGGGGTGGTTTGCAGTCTTCTTGAAAATCAAGTTTCGAATCCCAGAACAGAGAATAATAGGTGAATTGTTACCTCTGCCTAAACTTGGGTGGATTTGATGTTTCTTCCCTGATGGGAGGTAGCATGTACCCTGTGTGTTAGCTTGCTCTTACTAATTTCACTGATGCTAACTGAACTAGCTACCACAACTTCCTGCTAATTGCCTAACTATAGCTGCATATTAGGCTATTAGCTCTTCTATTCCCCAACTATTGTTTGATATGCTGACCTTTCTCCTGTTCTTTCCTCCATATTCTTTAGATTATTTTTTTAGTTATTTATGCATCTGTACCATCCTTGTTGTTTACCCTTTGTTCACAAGAATGACCATTTGGCAAGAATACTTTTCGTCTAAACCATGAGTTATGCAATCAATCCTCAATGTCAATTGCTGCATTACCTTTAACCTTGATGTCTCCTACAAAATAATGTAGATAATTTCTTTGCAAGGATCAAACAAATTATACCCTGCATGCATACATTGCACCCACATAGTTGATAGAATTGTAGTCATCCCAAACTCTGCAAGAGGGGTACAAAAGACTCACAAGCAAAAGAGGGTGAAACAGCCAATTGATGTAAGGAGCAAGATTGTGGGATGAACTTGCTGCAACTACTTAGCCGTACTTGTCTGTTATTTGTTGTTTCTAACAGCATCATTGTGAAAAGTTAGTTCATAGACTAGTAGAGGTTCTTAAGTATCCCGGGCATGCAGAGTTCTTCCTTCTACTGATGTTAGCTTCTGCAACTTTCTTCTATTGAGAAAGGTGGAGCATCAAACCTTTTTCTTTTGATTTAAGTGGACACACTATTTTGGACAAACCACAAGGCATAGTTGGACATGTAAAAAGGGATCAAAGGAGTAATATTAATTTATGCCCTTAATTTTGTATTACAATGTTCCAAGAGATGTGACGTTGCACAGCAATGGGTGGGAAAAAAGTGATTTGTTCTATCTTCTTAGAGTAATAAAATGTATCTGCATCCGTTGACTGCCTTCTCATGTGTAGTTTCCTGAAGTTAACTCTGTAATACAGGTTATTTTGAAAATAATCAAGCATTGCCAAGAGTTTTCACCGGCTTTGGTCACTGGACAACTCCTTGGATTGGATGTTGGAAGTGTTCTTGAAGTCACTAACTGTTTTCCTTTTCCGGTATGGTGAAGTCTGGTGTTTCTTGCTTCTTCTTTATACAGTTTCGATATTATTTGAACTAACTCTTTTTCACATCTATTTTACTCAGGTTCGCGAGGAAGATGAGGAGATTGAAGCCGAGGGTGCTAATTATCAACTTGAAATGATGCGATGCCTGAGGGAGGTTAATGTTGACAACAACACCGTTGGTTGGTAAGAGAGCTTTTTGACTATTAAGCCATCATTTAATCTGGTTAGAACTATGAGGTTCCTTCTTTCTAATTAAGAAATTATTTTTGTCTTTGTGCTAGTTCTCTATTATACTCATTGCTAACCTTTTATTCAGGCAAACATTCTTTTTCTGGGCTGGTGGTACTGTGTGATATGCATTTTCTTTCATCACTATTTCATTTATATTTAAGTATAAACATCTTTTTTCTTGAAATGCTTAGAATATGTATATCTATACCCTTAAGTCTAGAAATGGACAATGTACGACATTTGATGGCCTGATTGCATTTCCGCAGCCTAAAAAGTTACAGTGTTTAAATTTTGCCAGCTCCAAGGCAGTGAAGAGAAAGTTATTATCAAAAAAGGGAGTAACAAAACTGTCATACATGTTAACAATAATAAAACTGTCTTACTTGTTACACAGTAGTGAGAAAGACATGAAAAGCTTGCTCTACCTTTCTTTCCTACATAATTGTCATCTTAACTTTTACTATTACTAATTTGCTCATAATATGGACCTCATTGATGGTTATTTTCCAGGTATCAATCAACTTTGTTTGGTTCATATCAGACAGTGGAACTGATAGAGACCTTCATGAATTACCAGGTATCCATCTCTATGTCCATCTCTCATTGTTGGATTCTGAACTTTCAGTTTCTGCAGCGACCTTAGGTATACTGCACTTATCCTGCAAGTCATTTTCAGTTTAGATAATGTCATGTGGCAACCCCCTTTGTGCTGGCCCTAGGAAGAAAAGGGAGAAAGGATGAAATTAACAACACTGTAGAACTGTTTTTTGTAGTGATGCTAAATGAGTCCAAGGCATTCCAAACTGTGTTACCATTTTAGTAAAGTTTAAATACCTGGGCTCTATGCGTGATAGACCAGTGCATCATGCAAATGACCTGCAGATTAGCAAGACTAATGCCCTGAAGTTCTTTAACCACCCGTTTGCAGCTTAAGACTCGAACAAAATCTAGTGACTGATCAGACCGCCAACATATGTTAGGTAAAAGATAACTAAAACCTTGTTGCTCTAGTGGAATAACAAATGCAAAATGGTTTTTTTGTTAGCCTTTAATGAATGTAATTAGCTAAGGACAATGTAAATATACTTATCTTTCAATGGATGTAACCGTTTTGATTGGCAAGGATGAGGAAAAGCTCATGGAACCAGATCAAACCTATATGCAGGGAACGAGTCAAGTTTGAGTGTGAGCCTTGTAAATTTCAGATTCCAACAATCAATCATGTTGGATAGTGAACTTTGAAGAAATTAGAAAGTGATCATCCATTACCCAAAATTAGATAGTTTATGCCCCACACTTCAACAGGTACTGAAGGAGTAAATGATTTTTTTTGCGATAATGGAGGTATCTGGTTACCTAGCAAGGCAAGCCCCAAAGACAAGGATATGGAGTCCTTATTATTAAATGTAGCATGGAAATGTAATTCATGTTGGAATTTGAGGGGTAAAATTGCTGCTCAAGGTCCACTGAGATCAATTGCTTGAGTCAAACATCCATGAATAAGATCTTAAAGTCAAATGCCACTAGCTGTTGTCAATTCTTGCCTGAGTTATTTATTATCCTTTGCATGGAAAACCTACTAGCGTTCCTCATTTGTTGATCTTTTAAATATATAACACTTGGTACTGTAAATAAAGTAATATTCTTTCTGATTTTTTTCTTAATCTTTTTTCTTAAGATGTTGGCTTGAATAGGTGCTTCTGTATTTTTCATTAGTTGGTATTGGATGTGAACAATTCATTGTACTTAGACTCTGATGTTTGTGATTGCAGGAGAATATAAAACGTTGTGTCTGCATAATCTATGATCCTTCTAGATCCAACCAAGGTGTCTTAGCTTTGAAAGCCTTGAAGCTTTCTGATTCTTTCATGGAACTCTACAAGAGTAACAACTTTACTGGAGAGAAGTATGTTTATTCTCGAGTTGCTCCTTTTTTACATTCCCTCTCGAAATAGTTGTTGGTACTAGTTTAAGTAAAAGTAAACTCATTTTAATTTCTGATATTTGTTTTTTGGTTTTAGGCTGAGAGAAAAGAATCTTTCATGGGTTGACATCTTTGAAGAGATACCAGTATGATTCTTCTAACCATTTGTATTCTGTTTTCTCTTTGGCACTTGCATCATCATATGTAGATTCTTTTTCAAGTGACATTCTCTGCTTCAAAACCTGTTACCATTCTGCATGTCAGAGACAGTTGTATTCGTTTGGAGATCGGTTGTTTGAGAAAATAAAAATATAGTTCTGATACATTAGCCTTTTTTCCCTAGGGGACCCTTTTTCTTTTTTCCTTCGTTGTGTTCTTGAAAATAGTTCTTCCTCCTTTAAGATTTGATACGTGCATTGCTGCCACACATTTTCTTGGTTTGAACATTATTTTGAGTAATACCATCATCATATAGTGATTCTACCTGCCTGGTGTTAGTATAGGTACATTGTTCATAGGTTAGTAATTCAGCAGAAGTCTTCAACTTTACTGCAGAAGTTAATTTCGTCTTTTTTTTACAGATAAAAGTTTCAAATTCTGCACTCATTAGTGCCTTTATGACTGAATTGGAACCCGATACACCTGTAAC</genome_strand>
        <mrna_strand>TTTGCTTCTTGTAGAATTGCTCCGAAGTCGAGAAGCTTCGGATTCAGTCAATTTTCTGCTCAATTTCTATCATCATGGCAAATC...............................................................................................CTACAGGAAGGTCGTTTTTGCAAGTGGCAGCTACAGAGGAGGCTGTTGCGCCGCCACTCAGAGTTGTTCAGATTGAAGGACTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTTTGAAAATAATAAAGCATTGCCAGGAGTTTTCACCGGCTTTGGTCACTGGGCAACTCCTTGGATTGGATGTTGGGAGTGTTCTTGAAGTCACTAACTGTTTTCCCTTTCCG........................................................................................GTTCGCGAGGAAGATGAGGAGATTGAAGCCGAGGGTGCTAATTATCAACTTGAAATGATGCGATGCCTGAGGGAGGTTAATGTTGACAACAACACCGTGGGTTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCAATCAACTTTGTTTGGTTCTTATCAGACAGTGGAACTGATAGAGACCTTCATGAATTACCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAATATAAAACGTTGTGTCTGCATAATTTATGATCCTTCTAGATCCAACCAAGGTGTCTTAGCTTTGAAAGCCTTGAAGCTTTCTGATTCTTTCATGGAACTCTACAAGAGTAACAACTTTACTGGAGAGAA...................................................................................................................GCTGAGAGAAAAGAATCTTTCATGGGTTGACATCTTTGAAGAGATACCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAAAGTTTCGAATTCTGCACTCATTAGTGCCTTTATGACTGAATTGGAACCCGATACACCTGTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E471597" ref_strand="+" ref_description="SGN-E471597 [cSTB-24-H3]">
      <seq>gtagaattgctccgaagtcgagaagcttcggattcagtcaattttctgctcaatttctatcatcatggcaaatcctacaggaaggtcgtttttgcaagtggcagctacagaggaggctgttgcgccgccactcagagttgttcacattgaaggactggttattttgaaaataataaagcattgccaggagttttcaccggctttggtcactgggcaactccttggattggatgttgggagtgctcttgaagtcactaactgttttccctttccggttcgcgaggaaaatgaggagattgaagccgagggtgctaattatcaacttgaaatgatgcgatgcctgagggaggctaatgttgacaacaacaccgcgggttggtatcaatcaactttgtttggttcttatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="+" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="119331" stop="122589"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119631" g_stop="119704" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119705" i_stop="119799" i_length="95">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119800" g_stop="119882" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="157" r_length="83" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119883" i_stop="121393" i_length="1511">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.610" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121394" g_stop="121510" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="274" r_length="117" r_score="0.949"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121511" i_stop="121598" i_length="88">
            <donor d_prob="0.838" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121599" g_stop="121702" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="378" r_length="104" r_score="0.962"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121703" i_stop="122260" i_length="558">
            <donor d_prob="0.962" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="122261" g_stop="122289" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="407" r_length="29" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="+" ref_id="SGN-E471597" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>407</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E471597" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119631" e_stop="119704"/>
          <exon e_start="119800" e_stop="119882"/>
          <exon e_start="121394" e_stop="121510"/>
          <exon e_start="121599" e_stop="121702"/>
          <exon e_start="122261" e_stop="122289"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGAATTGCTCCGAAGTCGAGAAGCTTCGGATTCAGTCAATTTTCTGCTCAATTTCTATCATCATGGCAAATCGTACGCATAATTTTCCTTATTTGATTCTTTGCGAGGAATTTTTTGGGTACAATATGTGTAGTTAGCGATTAACCCCTTCAATTTGATTGATACAGCTACAGGACGGTCGTTTTTGCAAGTGGCAGCTACAGAGGAGGCTGTTGCGCCACCACTCAGAGTTGTTCAGATTGAAGGACTGGTACTATGCACTACTATCTATCTCTTTTTTTGTTTTTAGTATCTGTGCTGTCCGGGTCAGCTTATATGTGATTCCTGGGGTATCGGGTGCCTGATACATCCCATTGTGCTAAACGGGTAACTATGTCCACCAAGGTTTGGACAGGTGTGAAAAGATCAGCTTTGTGTTTTTCTTTGGGGGAATTGAACTTGATACGTGATAGTTCCGTACACACTTTATTCACCTCTAGGTTCACCAATAGGTGTACTATCTCTTCATTTTTTAAAAAAAGATTTTTTTTTTGTTTATGTGTATTTAGTTTGTGGAATCATAGATTAAGAAGTTGAGATTTCAATTGAAGCTCAAGAGCTACCTAGTTAGGTTCAGTGACAATCCCAGAAATCCAACTCAAAAGTAGAAACAAAAGGAAAAGAACTGAGTGATCTCTTGCCCTAATGGGGTGGTTTGCAGTCTTCTTGAAAATCAAGTTTCGAATCCCAGAACAGAGAATAATAGGTGAATTGTTACCTCTGCCTAAACTTGGGTGGATTTGATGTTTCTTCCCTGATGGGAGGTAGCATGTACCCTGTGTGTTAGCTTGCTCTTACTAATTTCACTGATGCTAACTGAACTAGCTACCACAACTTCCTGCTAATTGCCTAACTATAGCTGCATATTAGGCTATTAGCTCTTCTATTCCCCAACTATTGTTTGATATGCTGACCTTTCTCCTGTTCTTTCCTCCATATTCTTTAGATTATTTTTTTAGTTATTTATGCATCTGTACCATCCTTGTTGTTTACCCTTTGTTCACAAGAATGACCATTTGGCAAGAATACTTTTCGTCTAAACCATGAGTTATGCAATCAATCCTCAATGTCAATTGCTGCATTACCTTTAACCTTGATGTCTCCTACAAAATAATGTAGATAATTTCTTTGCAAGGATCAAACAAATTATACCCTGCATGCATACATTGCACCCACATAGTTGATAGAATTGTAGTCATCCCAAACTCTGCAAGAGGGGTACAAAAGACTCACAAGCAAAAGAGGGTGAAACAGCCAATTGATGTAAGGAGCAAGATTGTGGGATGAACTTGCTGCAACTACTTAGCCGTACTTGTCTGTTATTTGTTGTTTCTAACAGCATCATTGTGAAAAGTTAGTTCATAGACTAGTAGAGGTTCTTAAGTATCCCGGGCATGCAGAGTTCTTCCTTCTACTGATGTTAGCTTCTGCAACTTTCTTCTATTGAGAAAGGTGGAGCATCAAACCTTTTTCTTTTGATTTAAGTGGACACACTATTTTGGACAAACCACAAGGCATAGTTGGACATGTAAAAAGGGATCAAAGGAGTAATATTAATTTATGCCCTTAATTTTGTATTACAATGTTCCAAGAGATGTGACGTTGCACAGCAATGGGTGGGAAAAAAGTGATTTGTTCTATCTTCTTAGAGTAATAAAATGTATCTGCATCCGTTGACTGCCTTCTCATGTGTAGTTTCCTGAAGTTAACTCTGTAATACAGGTTATTTTGAAAATAATCAAGCATTGCCAAGAGTTTTCACCGGCTTTGGTCACTGGACAACTCCTTGGATTGGATGTTGGAAGTGTTCTTGAAGTCACTAACTGTTTTCCTTTTCCGGTATGGTGAAGTCTGGTGTTTCTTGCTTCTTCTTTATACAGTTTCGATATTATTTGAACTAACTCTTTTTCACATCTATTTTACTCAGGTTCGCGAGGAAGATGAGGAGATTGAAGCCGAGGGTGCTAATTATCAACTTGAAATGATGCGATGCCTGAGGGAGGTTAATGTTGACAACAACACCGTTGGTTGGTAAGAGAGCTTTTTGACTATTAAGCCATCATTTAATCTGGTTAGAACTATGAGGTTCCTTCTTTCTAATTAAGAAATTATTTTTGTCTTTGTGCTAGTTCTCTATTATACTCATTGCTAACCTTTTATTCAGGCAAACATTCTTTTTCTGGGCTGGTGGTACTGTGTGATATGCATTTTCTTTCATCACTATTTCATTTATATTTAAGTATAAACATCTTTTTTCTTGAAATGCTTAGAATATGTATATCTATACCCTTAAGTCTAGAAATGGACAATGTACGACATTTGATGGCCTGATTGCATTTCCGCAGCCTAAAAAGTTACAGTGTTTAAATTTTGCCAGCTCCAAGGCAGTGAAGAGAAAGTTATTATCAAAAAAGGGAGTAACAAAACTGTCATACATGTTAACAATAATAAAACTGTCTTACTTGTTACACAGTAGTGAGAAAGACATGAAAAGCTTGCTCTACCTTTCTTTCCTACATAATTGTCATCTTAACTTTTACTATTACTAATTTGCTCATAATATGGACCTCATTGATGGTTATTTTCCAGGTATCAATCAACTTTGTTTGGTTCATATC</genome_strand>
        <mrna_strand>GTAGAATTGCTCCGAAGTCGAGAAGCTTCGGATTCAGTCAATTTTCTGCTCAATTTCTATCATCATGGCAAATC...............................................................................................CTACAGGAAGGTCGTTTTTGCAAGTGGCAGCTACAGAGGAGGCTGTTGCGCCGCCACTCAGAGTTGTTCACATTGAAGGACTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTTTGAAAATAATAAAGCATTGCCAGGAGTTTTCACCGGCTTTGGTCACTGGGCAACTCCTTGGATTGGATGTTGGGAGTGCTCTTGAAGTCACTAACTGTTTTCCCTTTCCG........................................................................................GTTCGCGAGGAAAATGAGGAGATTGAAGCCGAGGGTGCTAATTATCAACTTGAAATGATGCGATGCCTGAGGGAGGCTAATGTTGACAACAACACCGCGGGTTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCAATCAACTTTGTTTGGTTCTTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E255062" ref_strand="+" ref_description="SGN-E255062 [cLEG-31-G18]">
      <seq>tggaattgctccgaagtcgagaagcttcggattcagtcaattttctgctcaatttctatcatcatggcaaatcctacaggacggtcgtttttgcaagtggcagctacagaggaggctgttgcgccaccactcagagttgttcagattgaaggactggttattttgaaaataatcaagcattgccaagagttttcaccggctttggtcactggacaactccttggattggatgttggaagtgttcttgaagtcactaactgttttccttttccggttcgcgaggaagatgaggagattgaagccgagggtgctaattatcaacttgaaatgatgcgatgcctgagggaggttaatgttgacaacaacaccgttggttggtatcaatcaactttgtttggttcatatcagacagtggaactgatagagaccttcatgaattaccaggagaatataaaacgttgtgtctgcataatctatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="+" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="119332" stop="123858"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119632" g_stop="119704" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119705" i_stop="119799" i_length="95">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119800" g_stop="119882" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="156" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119883" i_stop="121393" i_length="1511">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.610" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121394" g_stop="121510" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="273" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121511" i_stop="121598" i_length="88">
            <donor d_prob="0.838" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121599" g_stop="121702" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="377" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121703" i_stop="122260" i_length="558">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="122261" g_stop="122327" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="444" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="122328" i_stop="123522" i_length="1195">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="123523" g_stop="123558" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="480" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="+" ref_id="SGN-E255062" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E255062" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119632" e_stop="119704"/>
          <exon e_start="119800" e_stop="119882"/>
          <exon e_start="121394" e_stop="121510"/>
          <exon e_start="121599" e_stop="121702"/>
          <exon e_start="122261" e_stop="122327"/>
          <exon e_start="123523" e_stop="123558"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAATTGCTCCGAAGTCGAGAAGCTTCGGATTCAGTCAATTTTCTGCTCAATTTCTATCATCATGGCAAATCGTACGCATAATTTTCCTTATTTGATTCTTTGCGAGGAATTTTTTGGGTACAATATGTGTAGTTAGCGATTAACCCCTTCAATTTGATTGATACAGCTACAGGACGGTCGTTTTTGCAAGTGGCAGCTACAGAGGAGGCTGTTGCGCCACCACTCAGAGTTGTTCAGATTGAAGGACTGGTACTATGCACTACTATCTATCTCTTTTTTTGTTTTTAGTATCTGTGCTGTCCGGGTCAGCTTATATGTGATTCCTGGGGTATCGGGTGCCTGATACATCCCATTGTGCTAAACGGGTAACTATGTCCACCAAGGTTTGGACAGGTGTGAAAAGATCAGCTTTGTGTTTTTCTTTGGGGGAATTGAACTTGATACGTGATAGTTCCGTACACACTTTATTCACCTCTAGGTTCACCAATAGGTGTACTATCTCTTCATTTTTTAAAAAAAGATTTTTTTTTTGTTTATGTGTATTTAGTTTGTGGAATCATAGATTAAGAAGTTGAGATTTCAATTGAAGCTCAAGAGCTACCTAGTTAGGTTCAGTGACAATCCCAGAAATCCAACTCAAAAGTAGAAACAAAAGGAAAAGAACTGAGTGATCTCTTGCCCTAATGGGGTGGTTTGCAGTCTTCTTGAAAATCAAGTTTCGAATCCCAGAACAGAGAATAATAGGTGAATTGTTACCTCTGCCTAAACTTGGGTGGATTTGATGTTTCTTCCCTGATGGGAGGTAGCATGTACCCTGTGTGTTAGCTTGCTCTTACTAATTTCACTGATGCTAACTGAACTAGCTACCACAACTTCCTGCTAATTGCCTAACTATAGCTGCATATTAGGCTATTAGCTCTTCTATTCCCCAACTATTGTTTGATATGCTGACCTTTCTCCTGTTCTTTCCTCCATATTCTTTAGATTATTTTTTTAGTTATTTATGCATCTGTACCATCCTTGTTGTTTACCCTTTGTTCACAAGAATGACCATTTGGCAAGAATACTTTTCGTCTAAACCATGAGTTATGCAATCAATCCTCAATGTCAATTGCTGCATTACCTTTAACCTTGATGTCTCCTACAAAATAATGTAGATAATTTCTTTGCAAGGATCAAACAAATTATACCCTGCATGCATACATTGCACCCACATAGTTGATAGAATTGTAGTCATCCCAAACTCTGCAAGAGGGGTACAAAAGACTCACAAGCAAAAGAGGGTGAAACAGCCAATTGATGTAAGGAGCAAGATTGTGGGATGAACTTGCTGCAACTACTTAGCCGTACTTGTCTGTTATTTGTTGTTTCTAACAGCATCATTGTGAAAAGTTAGTTCATAGACTAGTAGAGGTTCTTAAGTATCCCGGGCATGCAGAGTTCTTCCTTCTACTGATGTTAGCTTCTGCAACTTTCTTCTATTGAGAAAGGTGGAGCATCAAACCTTTTTCTTTTGATTTAAGTGGACACACTATTTTGGACAAACCACAAGGCATAGTTGGACATGTAAAAAGGGATCAAAGGAGTAATATTAATTTATGCCCTTAATTTTGTATTACAATGTTCCAAGAGATGTGACGTTGCACAGCAATGGGTGGGAAAAAAGTGATTTGTTCTATCTTCTTAGAGTAATAAAATGTATCTGCATCCGTTGACTGCCTTCTCATGTGTAGTTTCCTGAAGTTAACTCTGTAATACAGGTTATTTTGAAAATAATCAAGCATTGCCAAGAGTTTTCACCGGCTTTGGTCACTGGACAACTCCTTGGATTGGATGTTGGAAGTGTTCTTGAAGTCACTAACTGTTTTCCTTTTCCGGTATGGTGAAGTCTGGTGTTTCTTGCTTCTTCTTTATACAGTTTCGATATTATTTGAACTAACTCTTTTTCACATCTATTTTACTCAGGTTCGCGAGGAAGATGAGGAGATTGAAGCCGAGGGTGCTAATTATCAACTTGAAATGATGCGATGCCTGAGGGAGGTTAATGTTGACAACAACACCGTTGGTTGGTAAGAGAGCTTTTTGACTATTAAGCCATCATTTAATCTGGTTAGAACTATGAGGTTCCTTCTTTCTAATTAAGAAATTATTTTTGTCTTTGTGCTAGTTCTCTATTATACTCATTGCTAACCTTTTATTCAGGCAAACATTCTTTTTCTGGGCTGGTGGTACTGTGTGATATGCATTTTCTTTCATCACTATTTCATTTATATTTAAGTATAAACATCTTTTTTCTTGAAATGCTTAGAATATGTATATCTATACCCTTAAGTCTAGAAATGGACAATGTACGACATTTGATGGCCTGATTGCATTTCCGCAGCCTAAAAAGTTACAGTGTTTAAATTTTGCCAGCTCCAAGGCAGTGAAGAGAAAGTTATTATCAAAAAAGGGAGTAACAAAACTGTCATACATGTTAACAATAATAAAACTGTCTTACTTGTTACACAGTAGTGAGAAAGACATGAAAAGCTTGCTCTACCTTTCTTTCCTACATAATTGTCATCTTAACTTTTACTATTACTAATTTGCTCATAATATGGACCTCATTGATGGTTATTTTCCAGGTATCAATCAACTTTGTTTGGTTCATATCAGACAGTGGAACTGATAGAGACCTTCATGAATTACCAGGTATCCATCTCTATGTCCATCTCTCATTGTTGGATTCTGAACTTTCAGTTTCTGCAGCGACCTTAGGTATACTGCACTTATCCTGCAAGTCATTTTCAGTTTAGATAATGTCATGTGGCAACCCCCTTTGTGCTGGCCCTAGGAAGAAAAGGGAGAAAGGATGAAATTAACAACACTGTAGAACTGTTTTTTGTAGTGATGCTAAATGAGTCCAAGGCATTCCAAACTGTGTTACCATTTTAGTAAAGTTTAAATACCTGGGCTCTATGCGTGATAGACCAGTGCATCATGCAAATGACCTGCAGATTAGCAAGACTAATGCCCTGAAGTTCTTTAACCACCCGTTTGCAGCTTAAGACTCGAACAAAATCTAGTGACTGATCAGACCGCCAACATATGTTAGGTAAAAGATAACTAAAACCTTGTTGCTCTAGTGGAATAACAAATGCAAAATGGTTTTTTTGTTAGCCTTTAATGAATGTAATTAGCTAAGGACAATGTAAATATACTTATCTTTCAATGGATGTAACCGTTTTGATTGGCAAGGATGAGGAAAAGCTCATGGAACCAGATCAAACCTATATGCAGGGAACGAGTCAAGTTTGAGTGTGAGCCTTGTAAATTTCAGATTCCAACAATCAATCATGTTGGATAGTGAACTTTGAAGAAATTAGAAAGTGATCATCCATTACCCAAAATTAGATAGTTTATGCCCCACACTTCAACAGGTACTGAAGGAGTAAATGATTTTTTTTGCGATAATGGAGGTATCTGGTTACCTAGCAAGGCAAGCCCCAAAGACAAGGATATGGAGTCCTTATTATTAAATGTAGCATGGAAATGTAATTCATGTTGGAATTTGAGGGGTAAAATTGCTGCTCAAGGTCCACTGAGATCAATTGCTTGAGTCAAACATCCATGAATAAGATCTTAAAGTCAAATGCCACTAGCTGTTGTCAATTCTTGCCTGAGTTATTTATTATCCTTTGCATGGAAAACCTACTAGCGTTCCTCATTTGTTGATCTTTTAAATATATAACACTTGGTACTGTAAATAAAGTAATATTCTTTCTGATTTTTTTCTTAATCTTTTTTCTTAAGATGTTGGCTTGAATAGGTGCTTCTGTATTTTTCATTAGTTGGTATTGGATGTGAACAATTCATTGTACTTAGACTCTGATGTTTGTGATTGCAGGAGAATATAAAACGTTGTGTCTGCATAATCTATGAT</genome_strand>
        <mrna_strand>TGGAATTGCTCCGAAGTCGAGAAGCTTCGGATTCAGTCAATTTTCTGCTCAATTTCTATCATCATGGCAAATC...............................................................................................CTACAGGACGGTCGTTTTTGCAAGTGGCAGCTACAGAGGAGGCTGTTGCGCCACCACTCAGAGTTGTTCAGATTGAAGGACTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTTTGAAAATAATCAAGCATTGCCAAGAGTTTTCACCGGCTTTGGTCACTGGACAACTCCTTGGATTGGATGTTGGAAGTGTTCTTGAAGTCACTAACTGTTTTCCTTTTCCG........................................................................................GTTCGCGAGGAAGATGAGGAGATTGAAGCCGAGGGTGCTAATTATCAACTTGAAATGATGCGATGCCTGAGGGAGGTTAATGTTGACAACAACACCGTTGGTTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCAATCAACTTTGTTTGGTTCATATCAGACAGTGGAACTGATAGAGACCTTCATGAATTACCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAATATAAAACGTTGTGTCTGCATAATCTATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E475050" ref_strand="+" ref_description="SGN-E475050 [cSTB-39-G17]">
      <seq>ccgaagtcgagaagcttcggattcagtcaattttctgctcaatttctatcatcatggcaaatcctacaggaaggtcgtttttgcaagtggcagctacagaggaggctgttgcgccgccactcagagttgttcagattgaaggactggttattttgaaaataataaagcattgccaggagttttcaccggctttggtcactgggcaactccttggattggatgttgggagtgttcttgaagtcactaactgttttccctttccggttcgcgaggaagatgaggagattgaagccgagggtgctaattatcaacttgaaatgatgcgatgcctgagggaggttaatgttgacaacaacaccgtgggttggtatcaatcaactttgtttggttcttatcagacagtggaactgatagagaccttcatgaattaccaggagaatataaaacgttgtgtctgcataatttatgatccttctagatccaaccaaggtgtcttagctttgaaagccttgaagctttctgattctttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="+" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="119342" stop="123919"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119642" g_stop="119704" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119705" i_stop="119799" i_length="95">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119800" g_stop="119882" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="146" r_length="83" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119883" i_stop="121393" i_length="1511">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.610" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121394" g_stop="121510" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="263" r_length="117" r_score="0.957"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121511" i_stop="121598" i_length="88">
            <donor d_prob="0.838" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121599" g_stop="121702" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="367" r_length="104" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121703" i_stop="122260" i_length="558">
            <donor d_prob="0.962" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="122261" g_stop="122327" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="434" r_length="67" r_score="0.985"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="122328" i_stop="123522" i_length="1195">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="123523" g_stop="123619" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="531" r_length="97" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="+" ref_id="SGN-E475050" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E475050" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119642" e_stop="119704"/>
          <exon e_start="119800" e_stop="119882"/>
          <exon e_start="121394" e_stop="121510"/>
          <exon e_start="121599" e_stop="121702"/>
          <exon e_start="122261" e_stop="122327"/>
          <exon e_start="123523" e_stop="123619"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGAAGTCGAGAAGCTTCGGATTCAGTCAATTTTCTGCTCAATTTCTATCATCATGGCAAATCGTACGCATAATTTTCCTTATTTGATTCTTTGCGAGGAATTTTTTGGGTACAATATGTGTAGTTAGCGATTAACCCCTTCAATTTGATTGATACAGCTACAGGACGGTCGTTTTTGCAAGTGGCAGCTACAGAGGAGGCTGTTGCGCCACCACTCAGAGTTGTTCAGATTGAAGGACTGGTACTATGCACTACTATCTATCTCTTTTTTTGTTTTTAGTATCTGTGCTGTCCGGGTCAGCTTATATGTGATTCCTGGGGTATCGGGTGCCTGATACATCCCATTGTGCTAAACGGGTAACTATGTCCACCAAGGTTTGGACAGGTGTGAAAAGATCAGCTTTGTGTTTTTCTTTGGGGGAATTGAACTTGATACGTGATAGTTCCGTACACACTTTATTCACCTCTAGGTTCACCAATAGGTGTACTATCTCTTCATTTTTTAAAAAAAGATTTTTTTTTTGTTTATGTGTATTTAGTTTGTGGAATCATAGATTAAGAAGTTGAGATTTCAATTGAAGCTCAAGAGCTACCTAGTTAGGTTCAGTGACAATCCCAGAAATCCAACTCAAAAGTAGAAACAAAAGGAAAAGAACTGAGTGATCTCTTGCCCTAATGGGGTGGTTTGCAGTCTTCTTGAAAATCAAGTTTCGAATCCCAGAACAGAGAATAATAGGTGAATTGTTACCTCTGCCTAAACTTGGGTGGATTTGATGTTTCTTCCCTGATGGGAGGTAGCATGTACCCTGTGTGTTAGCTTGCTCTTACTAATTTCACTGATGCTAACTGAACTAGCTACCACAACTTCCTGCTAATTGCCTAACTATAGCTGCATATTAGGCTATTAGCTCTTCTATTCCCCAACTATTGTTTGATATGCTGACCTTTCTCCTGTTCTTTCCTCCATATTCTTTAGATTATTTTTTTAGTTATTTATGCATCTGTACCATCCTTGTTGTTTACCCTTTGTTCACAAGAATGACCATTTGGCAAGAATACTTTTCGTCTAAACCATGAGTTATGCAATCAATCCTCAATGTCAATTGCTGCATTACCTTTAACCTTGATGTCTCCTACAAAATAATGTAGATAATTTCTTTGCAAGGATCAAACAAATTATACCCTGCATGCATACATTGCACCCACATAGTTGATAGAATTGTAGTCATCCCAAACTCTGCAAGAGGGGTACAAAAGACTCACAAGCAAAAGAGGGTGAAACAGCCAATTGATGTAAGGAGCAAGATTGTGGGATGAACTTGCTGCAACTACTTAGCCGTACTTGTCTGTTATTTGTTGTTTCTAACAGCATCATTGTGAAAAGTTAGTTCATAGACTAGTAGAGGTTCTTAAGTATCCCGGGCATGCAGAGTTCTTCCTTCTACTGATGTTAGCTTCTGCAACTTTCTTCTATTGAGAAAGGTGGAGCATCAAACCTTTTTCTTTTGATTTAAGTGGACACACTATTTTGGACAAACCACAAGGCATAGTTGGACATGTAAAAAGGGATCAAAGGAGTAATATTAATTTATGCCCTTAATTTTGTATTACAATGTTCCAAGAGATGTGACGTTGCACAGCAATGGGTGGGAAAAAAGTGATTTGTTCTATCTTCTTAGAGTAATAAAATGTATCTGCATCCGTTGACTGCCTTCTCATGTGTAGTTTCCTGAAGTTAACTCTGTAATACAGGTTATTTTGAAAATAATCAAGCATTGCCAAGAGTTTTCACCGGCTTTGGTCACTGGACAACTCCTTGGATTGGATGTTGGAAGTGTTCTTGAAGTCACTAACTGTTTTCCTTTTCCGGTATGGTGAAGTCTGGTGTTTCTTGCTTCTTCTTTATACAGTTTCGATATTATTTGAACTAACTCTTTTTCACATCTATTTTACTCAGGTTCGCGAGGAAGATGAGGAGATTGAAGCCGAGGGTGCTAATTATCAACTTGAAATGATGCGATGCCTGAGGGAGGTTAATGTTGACAACAACACCGTTGGTTGGTAAGAGAGCTTTTTGACTATTAAGCCATCATTTAATCTGGTTAGAACTATGAGGTTCCTTCTTTCTAATTAAGAAATTATTTTTGTCTTTGTGCTAGTTCTCTATTATACTCATTGCTAACCTTTTATTCAGGCAAACATTCTTTTTCTGGGCTGGTGGTACTGTGTGATATGCATTTTCTTTCATCACTATTTCATTTATATTTAAGTATAAACATCTTTTTTCTTGAAATGCTTAGAATATGTATATCTATACCCTTAAGTCTAGAAATGGACAATGTACGACATTTGATGGCCTGATTGCATTTCCGCAGCCTAAAAAGTTACAGTGTTTAAATTTTGCCAGCTCCAAGGCAGTGAAGAGAAAGTTATTATCAAAAAAGGGAGTAACAAAACTGTCATACATGTTAACAATAATAAAACTGTCTTACTTGTTACACAGTAGTGAGAAAGACATGAAAAGCTTGCTCTACCTTTCTTTCCTACATAATTGTCATCTTAACTTTTACTATTACTAATTTGCTCATAATATGGACCTCATTGATGGTTATTTTCCAGGTATCAATCAACTTTGTTTGGTTCATATCAGACAGTGGAACTGATAGAGACCTTCATGAATTACCAGGTATCCATCTCTATGTCCATCTCTCATTGTTGGATTCTGAACTTTCAGTTTCTGCAGCGACCTTAGGTATACTGCACTTATCCTGCAAGTCATTTTCAGTTTAGATAATGTCATGTGGCAACCCCCTTTGTGCTGGCCCTAGGAAGAAAAGGGAGAAAGGATGAAATTAACAACACTGTAGAACTGTTTTTTGTAGTGATGCTAAATGAGTCCAAGGCATTCCAAACTGTGTTACCATTTTAGTAAAGTTTAAATACCTGGGCTCTATGCGTGATAGACCAGTGCATCATGCAAATGACCTGCAGATTAGCAAGACTAATGCCCTGAAGTTCTTTAACCACCCGTTTGCAGCTTAAGACTCGAACAAAATCTAGTGACTGATCAGACCGCCAACATATGTTAGGTAAAAGATAACTAAAACCTTGTTGCTCTAGTGGAATAACAAATGCAAAATGGTTTTTTTGTTAGCCTTTAATGAATGTAATTAGCTAAGGACAATGTAAATATACTTATCTTTCAATGGATGTAACCGTTTTGATTGGCAAGGATGAGGAAAAGCTCATGGAACCAGATCAAACCTATATGCAGGGAACGAGTCAAGTTTGAGTGTGAGCCTTGTAAATTTCAGATTCCAACAATCAATCATGTTGGATAGTGAACTTTGAAGAAATTAGAAAGTGATCATCCATTACCCAAAATTAGATAGTTTATGCCCCACACTTCAACAGGTACTGAAGGAGTAAATGATTTTTTTTGCGATAATGGAGGTATCTGGTTACCTAGCAAGGCAAGCCCCAAAGACAAGGATATGGAGTCCTTATTATTAAATGTAGCATGGAAATGTAATTCATGTTGGAATTTGAGGGGTAAAATTGCTGCTCAAGGTCCACTGAGATCAATTGCTTGAGTCAAACATCCATGAATAAGATCTTAAAGTCAAATGCCACTAGCTGTTGTCAATTCTTGCCTGAGTTATTTATTATCCTTTGCATGGAAAACCTACTAGCGTTCCTCATTTGTTGATCTTTTAAATATATAACACTTGGTACTGTAAATAAAGTAATATTCTTTCTGATTTTTTTCTTAATCTTTTTTCTTAAGATGTTGGCTTGAATAGGTGCTTCTGTATTTTTCATTAGTTGGTATTGGATGTGAACAATTCATTGTACTTAGACTCTGATGTTTGTGATTGCAGGAGAATATAAAACGTTGTGTCTGCATAATCTATGATCCTTCTAGATCCAACCAAGGTGTCTTAGCTTTGAAAGCCTTGAAGCTTTCTGATTCTTTCA</genome_strand>
        <mrna_strand>CCGAAGTCGAGAAGCTTCGGATTCAGTCAATTTTCTGCTCAATTTCTATCATCATGGCAAATC...............................................................................................CTACAGGAAGGTCGTTTTTGCAAGTGGCAGCTACAGAGGAGGCTGTTGCGCCGCCACTCAGAGTTGTTCAGATTGAAGGACTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTTTGAAAATAATAAAGCATTGCCAGGAGTTTTCACCGGCTTTGGTCACTGGGCAACTCCTTGGATTGGATGTTGGGAGTGTTCTTGAAGTCACTAACTGTTTTCCCTTTCCG........................................................................................GTTCGCGAGGAAGATGAGGAGATTGAAGCCGAGGGTGCTAATTATCAACTTGAAATGATGCGATGCCTGAGGGAGGTTAATGTTGACAACAACACCGTGGGTTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCAATCAACTTTGTTTGGTTCTTATCAGACAGTGGAACTGATAGAGACCTTCATGAATTACCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAATATAAAACGTTGTGTCTGCATAATTTATGATCCTTCTAGATCCAACCAAGGTGTCTTAGCTTTGAAAGCCTTGAAGCTTTCTGATTCTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E705681" ref_strand="+" ref_description="SGN-E705681 [FA27DD06]">
      <seq>aggcaacttcttgggttggatgtcggaagtgttcttgaagtcacaaactgttttccatttccggttcgtgaagaggatgaggagatcgaggctgagggcgctaattatcagcttgaaatgatgagatgcctaagggaggttaatgttgacaacaacaccgttggttggtatcaatcaactttatttggttcatttcaaactgttgaattgatagagaccttcatgaattaccaggagaatattaaacgttgtgtttgcatcatctatgatccttcaagatccaaccaaggtgtcttagcattgaaggccttaaagctttctgattctttcatggaactctataggagtaataactttactggagagaagttgagggaaaagaatctttcatgggtcgacatcttcgaagagataccatttaaagtttcaaactcggctctcataagtgcctttatgactgaacttgaacctgatacacctgtaactcagtgtgattatgagcgcctacaattgtcaaccaatccatacttggaaaggaatgttgagtttttgatcgagtgtatggatgacttgtcaatggagcagcaaaagttccaattttactatcggaacctttcccgtcaacaagctcagcagcaagcttggcttcaaaagaggagggctgacaacatggcacgtaaagcttctggagaagagccactgccggaggaggatccttctaatcctgcctttaagccaatcccagaaccctcacgattggacagctttctcataactaatcaaatagcaaactactgcaaccagattaacggtgttgctggacagagcttcagtagactctatctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="+" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="121148" stop="125305"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121448" g_stop="121510" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="0.889"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121511" i_stop="121598" i_length="88">
            <donor d_prob="0.838" d_score="0.92"/>
            <acceptor a_prob="0.997" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121599" g_stop="121702" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="167" r_length="104" r_score="0.904"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121703" i_stop="122260" i_length="558">
            <donor d_prob="0.962" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="122261" g_stop="122327" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="234" r_length="67" r_score="0.910"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="122328" i_stop="123522" i_length="1195">
            <donor d_prob="0.996" d_score="0.90"/>
            <acceptor a_prob="0.990" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123523" g_stop="123656" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="368" r_length="134" r_score="0.925"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="123657" i_stop="123771" i_length="115">
            <donor d_prob="0.949" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="123772" g_stop="123820" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="417" r_length="49" r_score="0.918"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="123821" i_stop="124255" i_length="435">
            <donor d_prob="0.938" d_score="0.92"/>
            <acceptor a_prob="0.780" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="124256" g_stop="124327" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="489" r_length="72" r_score="0.875"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="124328" i_stop="124412" i_length="85">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.869" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="124413" g_stop="124514" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="591" r_length="102" r_score="0.892"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="124515" i_stop="124594" i_length="80">
            <donor d_prob="0.999" d_score="0.88"/>
            <acceptor a_prob="0.993" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="124595" g_stop="124662" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="592" r_stop="659" r_length="68" r_score="0.912"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="124663" i_stop="124850" i_length="188">
            <donor d_prob="0.987" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="124851" g_stop="125003" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="660" r_stop="812" r_length="153" r_score="0.889"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="125004" i_stop="125111" i_length="108">
            <donor d_prob="0.899" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="125112" g_stop="125147" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="813" r_stop="848" r_length="36" r_score="0.833"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="+" ref_id="SGN-E705681" ref_strand="+">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>848</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705681" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121448" e_stop="121510"/>
          <exon e_start="121599" e_stop="121702"/>
          <exon e_start="122261" e_stop="122327"/>
          <exon e_start="123523" e_stop="123656"/>
          <exon e_start="123772" e_stop="123820"/>
          <exon e_start="124256" e_stop="124327"/>
          <exon e_start="124413" e_stop="124514"/>
          <exon e_start="124595" e_stop="124662"/>
          <exon e_start="124851" e_stop="125003"/>
          <exon e_start="125112" e_stop="125147"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACAACTCCTTGGATTGGATGTTGGAAGTGTTCTTGAAGTCACTAACTGTTTTCCTTTTCCGGTATGGTGAAGTCTGGTGTTTCTTGCTTCTTCTTTATACAGTTTCGATATTATTTGAACTAACTCTTTTTCACATCTATTTTACTCAGGTTCGCGAGGAAGATGAGGAGATTGAAGCCGAGGGTGCTAATTATCAACTTGAAATGATGCGATGCCTGAGGGAGGTTAATGTTGACAACAACACCGTTGGTTGGTAAGAGAGCTTTTTGACTATTAAGCCATCATTTAATCTGGTTAGAACTATGAGGTTCCTTCTTTCTAATTAAGAAATTATTTTTGTCTTTGTGCTAGTTCTCTATTATACTCATTGCTAACCTTTTATTCAGGCAAACATTCTTTTTCTGGGCTGGTGGTACTGTGTGATATGCATTTTCTTTCATCACTATTTCATTTATATTTAAGTATAAACATCTTTTTTCTTGAAATGCTTAGAATATGTATATCTATACCCTTAAGTCTAGAAATGGACAATGTACGACATTTGATGGCCTGATTGCATTTCCGCAGCCTAAAAAGTTACAGTGTTTAAATTTTGCCAGCTCCAAGGCAGTGAAGAGAAAGTTATTATCAAAAAAGGGAGTAACAAAACTGTCATACATGTTAACAATAATAAAACTGTCTTACTTGTTACACAGTAGTGAGAAAGACATGAAAAGCTTGCTCTACCTTTCTTTCCTACATAATTGTCATCTTAACTTTTACTATTACTAATTTGCTCATAATATGGACCTCATTGATGGTTATTTTCCAGGTATCAATCAACTTTGTTTGGTTCATATCAGACAGTGGAACTGATAGAGACCTTCATGAATTACCAGGTATCCATCTCTATGTCCATCTCTCATTGTTGGATTCTGAACTTTCAGTTTCTGCAGCGACCTTAGGTATACTGCACTTATCCTGCAAGTCATTTTCAGTTTAGATAATGTCATGTGGCAACCCCCTTTGTGCTGGCCCTAGGAAGAAAAGGGAGAAAGGATGAAATTAACAACACTGTAGAACTGTTTTTTGTAGTGATGCTAAATGAGTCCAAGGCATTCCAAACTGTGTTACCATTTTAGTAAAGTTTAAATACCTGGGCTCTATGCGTGATAGACCAGTGCATCATGCAAATGACCTGCAGATTAGCAAGACTAATGCCCTGAAGTTCTTTAACCACCCGTTTGCAGCTTAAGACTCGAACAAAATCTAGTGACTGATCAGACCGCCAACATATGTTAGGTAAAAGATAACTAAAACCTTGTTGCTCTAGTGGAATAACAAATGCAAAATGGTTTTTTTGTTAGCCTTTAATGAATGTAATTAGCTAAGGACAATGTAAATATACTTATCTTTCAATGGATGTAACCGTTTTGATTGGCAAGGATGAGGAAAAGCTCATGGAACCAGATCAAACCTATATGCAGGGAACGAGTCAAGTTTGAGTGTGAGCCTTGTAAATTTCAGATTCCAACAATCAATCATGTTGGATAGTGAACTTTGAAGAAATTAGAAAGTGATCATCCATTACCCAAAATTAGATAGTTTATGCCCCACACTTCAACAGGTACTGAAGGAGTAAATGATTTTTTTTGCGATAATGGAGGTATCTGGTTACCTAGCAAGGCAAGCCCCAAAGACAAGGATATGGAGTCCTTATTATTAAATGTAGCATGGAAATGTAATTCATGTTGGAATTTGAGGGGTAAAATTGCTGCTCAAGGTCCACTGAGATCAATTGCTTGAGTCAAACATCCATGAATAAGATCTTAAAGTCAAATGCCACTAGCTGTTGTCAATTCTTGCCTGAGTTATTTATTATCCTTTGCATGGAAAACCTACTAGCGTTCCTCATTTGTTGATCTTTTAAATATATAACACTTGGTACTGTAAATAAAGTAATATTCTTTCTGATTTTTTTCTTAATCTTTTTTCTTAAGATGTTGGCTTGAATAGGTGCTTCTGTATTTTTCATTAGTTGGTATTGGATGTGAACAATTCATTGTACTTAGACTCTGATGTTTGTGATTGCAGGAGAATATAAAACGTTGTGTCTGCATAATCTATGATCCTTCTAGATCCAACCAAGGTGTCTTAGCTTTGAAAGCCTTGAAGCTTTCTGATTCTTTCATGGAACTCTACAAGAGTAACAACTTTACTGGAGAGAAGTATGTTTATTCTCGAGTTGCTCCTTTTTTACATTCCCTCTCGAAATAGTTGTTGGTACTAGTTTAAGTAAAAGTAAACTCATTTTAATTTCTGATATTTGTTTTTTGGTTTTAGGCTGAGAGAAAAGAATCTTTCATGGGTTGACATCTTTGAAGAGATACCAGTATGATTCTTCTAACCATTTGTATTCTGTTTTCTCTTTGGCACTTGCATCATCATATGTAGATTCTTTTTCAAGTGACATTCTCTGCTTCAAAACCTGTTACCATTCTGCATGTCAGAGACAGTTGTATTCGTTTGGAGATCGGTTGTTTGAGAAAATAAAAATATAGTTCTGATACATTAGCCTTTTTTCCCTAGGGGACCCTTTTTCTTTTTTCCTTCGTTGTGTTCTTGAAAATAGTTCTTCCTCCTTTAAGATTTGATACGTGCATTGCTGCCACACATTTTCTTGGTTTGAACATTATTTTGAGTAATACCATCATCATATAGTGATTCTACCTGCCTGGTGTTAGTATAGGTACATTGTTCATAGGTTAGTAATTCAGCAGAAGTCTTCAACTTTACTGCAGAAGTTAATTTCGTCTTTTTTTTACAGATAAAAGTTTCAAATTCTGCACTCATTAGTGCCTTTATGACTGAATTGGAACCCGATACACCTGTAACTCAGGTAATGTAACTTAAGTTTGGCAGAATACTGAATATTTATATATGTGGCCAATCTGTAATACTGACAATTTTCTTCCTTTTGTCAGTGTGATTATGAACGCTTACAATTATCAACCAATCCATATTTGGAGAGGAATGTGGAATTTTTGATTGAATGCATGGATGACTTGTCGATGGAGCAGCAAAAGGTTTGTCTTTCCTCTTCCTGGGTCAATCTTTCCTTTTATTGTGTTGTGATTGTTTACTAACACTAGTGCTTTATTTGCAGTTCCAATTCTATTACCGGAATCTTTCTCGTCAACAAGCTCAGCAGCAAGCTTGGCTTCAGAAGAGGAGGTATCTTTTTTATAATGGCATATTCGAGTAGTTTGTCACTTATTTAGATCCTCAGATGCTTTGTCACCTTGCGGTTAAGCTTGAATCTTTTGCTGTGCTATAATTCTGGCGAACTTTGTATATTATAATTCTTTATGATTAAAGATGCTTCGCTGTTCACATTTTGTACTGGCCTCTGTTATTTACAGGACTGAGAACATGGCACGTAAAGCTGCAGGAGAAGAGCTACTGCCAGAAGAGGATCCCTCTAATCCTGTCTTTAAGCCACTCCCAGAGCCCTCACGGTTGGATAGCTTTCTCATAACTAATCAAATTTCAAATTACTGCAACCAGATTAATGGGTAAGTTGCGGTCTTGTTTGCCATTATCTTTTCTGTTGCTGGGTTTTTTTTTCTAGCCTGTGATATTTCGTTTCTTCTTGTATGAACTTGTTTATATGTTGATTGCAGAGTTGCGGGACAAAGCCTCAGTAGACTACATCTGAT</genome_strand>
        <mrna_strand>AGGCAACTTCTTGGGTTGGATGTCGGAAGTGTTCTTGAAGTCACAAACTGTTTTCCATTTCCG........................................................................................GTTCGTGAAGAGGATGAGGAGATCGAGGCTGAGGGCGCTAATTATCAGCTTGAAATGATGAGATGCCTAAGGGAGGTTAATGTTGACAACAACACCGTTGGTTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCAATCAACTTTATTTGGTTCATTTCAAACTGTTGAATTGATAGAGACCTTCATGAATTACCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAATATTAAACGTTGTGTTTGCATCATCTATGATCCTTCAAGATCCAACCAAGGTGTCTTAGCATTGAAGGCCTTAAAGCTTTCTGATTCTTTCATGGAACTCTATAGGAGTAATAACTTTACTGGAGAGAA...................................................................................................................GTTGAGGGAAAAGAATCTTTCATGGGTCGACATCTTCGAAGAGATACCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAAAGTTTCAAACTCGGCTCTCATAAGTGCCTTTATGACTGAACTTGAACCTGATACACCTGTAACTCAG.....................................................................................TGTGATTATGAGCGCCTACAATTGTCAACCAATCCATACTTGGAAAGGAATGTTGAGTTTTTGATCGAGTGTATGGATGACTTGTCAATGGAGCAGCAAAAG................................................................................TTCCAATTTTACTATCGGAACCTTTCCCGTCAACAAGCTCAGCAGCAAGCTTGGCTTCAAAAGAGGAG............................................................................................................................................................................................GGCTGACAACATGGCACGTAAAGCTTCTGGAGAAGAGCCACTGCCGGAGGAGGATCCTTCTAATCCTGCCTTTAAGCCAATCCCAGAACCCTCACGATTGGACAGCTTTCTCATAACTAATCAAATAGCAAACTACTGCAACCAGATTAACGG............................................................................................................TGTTGCTGGACAGAGCTTCAGTAGACTCTATCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E611186" ref_strand="+" ref_description="SGN-E611186 [60934]">
      <seq>gttgacaacaacaccgtgggttggtatcaatcaactttgtttggttcttatcagacagtggaactgatagagaccttcatgaattaccaggagaatattaaacgttgtgtctgtataatctatgatccttctagatccaaccaaggtgtcttagctttgaaagccttgaagctttctgattctttcatggaactctacaagagtaacaactttactggggagaagctgagagaaaagaatctttcatgggttgacatctttgaagagataccaataaaagtttcgaattctgcactcattagtgcctttatgactgaattggaacccgatacacctgtaactcagtgtgattatgaacgcctacaattatcaaccaatccatatttggagaggaatgtggaattcttgattgaatgcatggatgacttgtcgatggaacagcaaaagttccaattctattaccggaatctttctcgtcaacaagctcagcagcaagcttggcttcaaaagaggaggactgagaacatggcacgtaaagctgcacgagaagagctactgccaaaagaggatccctctaatcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="+" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="121380" stop="125217"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121680" g_stop="121702" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121703" i_stop="122260" i_length="558">
            <donor d_prob="0.962" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="122261" g_stop="122327" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="90" r_length="67" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="122328" i_stop="123522" i_length="1195">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="123523" g_stop="123656" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="224" r_length="134" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="123657" i_stop="123771" i_length="115">
            <donor d_prob="0.949" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123772" g_stop="123820" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="273" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="123821" i_stop="124255" i_length="435">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.780" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="124256" g_stop="124327" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="345" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="124328" i_stop="124412" i_length="85">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.869" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="124413" g_stop="124514" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="447" r_length="102" r_score="0.971"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="124515" i_stop="124594" i_length="80">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="124595" g_stop="124662" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="515" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="124663" i_stop="124850" i_length="188">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="124851" g_stop="124917" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="582" r_length="67" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="+" ref_id="SGN-E611186" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E611186" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121680" e_stop="121702"/>
          <exon e_start="122261" e_stop="122327"/>
          <exon e_start="123523" e_stop="123656"/>
          <exon e_start="123772" e_stop="123820"/>
          <exon e_start="124256" e_stop="124327"/>
          <exon e_start="124413" e_stop="124514"/>
          <exon e_start="124595" e_stop="124662"/>
          <exon e_start="124851" e_stop="124917"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGACAACAACACCGTTGGTTGGTAAGAGAGCTTTTTGACTATTAAGCCATCATTTAATCTGGTTAGAACTATGAGGTTCCTTCTTTCTAATTAAGAAATTATTTTTGTCTTTGTGCTAGTTCTCTATTATACTCATTGCTAACCTTTTATTCAGGCAAACATTCTTTTTCTGGGCTGGTGGTACTGTGTGATATGCATTTTCTTTCATCACTATTTCATTTATATTTAAGTATAAACATCTTTTTTCTTGAAATGCTTAGAATATGTATATCTATACCCTTAAGTCTAGAAATGGACAATGTACGACATTTGATGGCCTGATTGCATTTCCGCAGCCTAAAAAGTTACAGTGTTTAAATTTTGCCAGCTCCAAGGCAGTGAAGAGAAAGTTATTATCAAAAAAGGGAGTAACAAAACTGTCATACATGTTAACAATAATAAAACTGTCTTACTTGTTACACAGTAGTGAGAAAGACATGAAAAGCTTGCTCTACCTTTCTTTCCTACATAATTGTCATCTTAACTTTTACTATTACTAATTTGCTCATAATATGGACCTCATTGATGGTTATTTTCCAGGTATCAATCAACTTTGTTTGGTTCATATCAGACAGTGGAACTGATAGAGACCTTCATGAATTACCAGGTATCCATCTCTATGTCCATCTCTCATTGTTGGATTCTGAACTTTCAGTTTCTGCAGCGACCTTAGGTATACTGCACTTATCCTGCAAGTCATTTTCAGTTTAGATAATGTCATGTGGCAACCCCCTTTGTGCTGGCCCTAGGAAGAAAAGGGAGAAAGGATGAAATTAACAACACTGTAGAACTGTTTTTTGTAGTGATGCTAAATGAGTCCAAGGCATTCCAAACTGTGTTACCATTTTAGTAAAGTTTAAATACCTGGGCTCTATGCGTGATAGACCAGTGCATCATGCAAATGACCTGCAGATTAGCAAGACTAATGCCCTGAAGTTCTTTAACCACCCGTTTGCAGCTTAAGACTCGAACAAAATCTAGTGACTGATCAGACCGCCAACATATGTTAGGTAAAAGATAACTAAAACCTTGTTGCTCTAGTGGAATAACAAATGCAAAATGGTTTTTTTGTTAGCCTTTAATGAATGTAATTAGCTAAGGACAATGTAAATATACTTATCTTTCAATGGATGTAACCGTTTTGATTGGCAAGGATGAGGAAAAGCTCATGGAACCAGATCAAACCTATATGCAGGGAACGAGTCAAGTTTGAGTGTGAGCCTTGTAAATTTCAGATTCCAACAATCAATCATGTTGGATAGTGAACTTTGAAGAAATTAGAAAGTGATCATCCATTACCCAAAATTAGATAGTTTATGCCCCACACTTCAACAGGTACTGAAGGAGTAAATGATTTTTTTTGCGATAATGGAGGTATCTGGTTACCTAGCAAGGCAAGCCCCAAAGACAAGGATATGGAGTCCTTATTATTAAATGTAGCATGGAAATGTAATTCATGTTGGAATTTGAGGGGTAAAATTGCTGCTCAAGGTCCACTGAGATCAATTGCTTGAGTCAAACATCCATGAATAAGATCTTAAAGTCAAATGCCACTAGCTGTTGTCAATTCTTGCCTGAGTTATTTATTATCCTTTGCATGGAAAACCTACTAGCGTTCCTCATTTGTTGATCTTTTAAATATATAACACTTGGTACTGTAAATAAAGTAATATTCTTTCTGATTTTTTTCTTAATCTTTTTTCTTAAGATGTTGGCTTGAATAGGTGCTTCTGTATTTTTCATTAGTTGGTATTGGATGTGAACAATTCATTGTACTTAGACTCTGATGTTTGTGATTGCAGGAGAATATAAAACGTTGTGTCTGCATAATCTATGATCCTTCTAGATCCAACCAAGGTGTCTTAGCTTTGAAAGCCTTGAAGCTTTCTGATTCTTTCATGGAACTCTACAAGAGTAACAACTTTACTGGAGAGAAGTATGTTTATTCTCGAGTTGCTCCTTTTTTACATTCCCTCTCGAAATAGTTGTTGGTACTAGTTTAAGTAAAAGTAAACTCATTTTAATTTCTGATATTTGTTTTTTGGTTTTAGGCTGAGAGAAAAGAATCTTTCATGGGTTGACATCTTTGAAGAGATACCAGTATGATTCTTCTAACCATTTGTATTCTGTTTTCTCTTTGGCACTTGCATCATCATATGTAGATTCTTTTTCAAGTGACATTCTCTGCTTCAAAACCTGTTACCATTCTGCATGTCAGAGACAGTTGTATTCGTTTGGAGATCGGTTGTTTGAGAAAATAAAAATATAGTTCTGATACATTAGCCTTTTTTCCCTAGGGGACCCTTTTTCTTTTTTCCTTCGTTGTGTTCTTGAAAATAGTTCTTCCTCCTTTAAGATTTGATACGTGCATTGCTGCCACACATTTTCTTGGTTTGAACATTATTTTGAGTAATACCATCATCATATAGTGATTCTACCTGCCTGGTGTTAGTATAGGTACATTGTTCATAGGTTAGTAATTCAGCAGAAGTCTTCAACTTTACTGCAGAAGTTAATTTCGTCTTTTTTTTACAGATAAAAGTTTCAAATTCTGCACTCATTAGTGCCTTTATGACTGAATTGGAACCCGATACACCTGTAACTCAGGTAATGTAACTTAAGTTTGGCAGAATACTGAATATTTATATATGTGGCCAATCTGTAATACTGACAATTTTCTTCCTTTTGTCAGTGTGATTATGAACGCTTACAATTATCAACCAATCCATATTTGGAGAGGAATGTGGAATTTTTGATTGAATGCATGGATGACTTGTCGATGGAGCAGCAAAAGGTTTGTCTTTCCTCTTCCTGGGTCAATCTTTCCTTTTATTGTGTTGTGATTGTTTACTAACACTAGTGCTTTATTTGCAGTTCCAATTCTATTACCGGAATCTTTCTCGTCAACAAGCTCAGCAGCAAGCTTGGCTTCAGAAGAGGAGGTATCTTTTTTATAATGGCATATTCGAGTAGTTTGTCACTTATTTAGATCCTCAGATGCTTTGTCACCTTGCGGTTAAGCTTGAATCTTTTGCTGTGCTATAATTCTGGCGAACTTTGTATATTATAATTCTTTATGATTAAAGATGCTTCGCTGTTCACATTTTGTACTGGCCTCTGTTATTTACAGGACTGAGAACATGGCACGTAAAGCTGCAGGAGAAGAGCTACTGCCAGAAGAGGATCCCTCTAATCCT</genome_strand>
        <mrna_strand>GTTGACAACAACACCGTGGGTTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCAATCAACTTTGTTTGGTTCTTATCAGACAGTGGAACTGATAGAGACCTTCATGAATTACCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAATATTAAACGTTGTGTCTGTATAATCTATGATCCTTCTAGATCCAACCAAGGTGTCTTAGCTTTGAAAGCCTTGAAGCTTTCTGATTCTTTCATGGAACTCTACAAGAGTAACAACTTTACTGGGGAGAA...................................................................................................................GCTGAGAGAAAAGAATCTTTCATGGGTTGACATCTTTGAAGAGATACCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAAGTTTCGAATTCTGCACTCATTAGTGCCTTTATGACTGAATTGGAACCCGATACACCTGTAACTCAG.....................................................................................TGTGATTATGAACGCCTACAATTATCAACCAATCCATATTTGGAGAGGAATGTGGAATTCTTGATTGAATGCATGGATGACTTGTCGATGGAACAGCAAAAG................................................................................TTCCAATTCTATTACCGGAATCTTTCTCGTCAACAAGCTCAGCAGCAAGCTTGGCTTCAAAAGAGGAG............................................................................................................................................................................................GACTGAGAACATGGCACGTAAAGCTGCACGAGAAGAGCTACTGCCAAAAGAGGATCCCTCTAATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E441509" ref_strand="+" ref_description="SGN-E441509 [cSTA-30-P3]">
      <seq>gggagaaagttattatcaaaaaagggagtaacaaaactgtcatacatgttaacattaaaaaaaactgtcttatgcattacacagtagtgagaaagacatgtaaagcttgctctatttacctttctttcctacattattgtcatcttaacgtttacttcattgctaatttgttcataatatggatctcattggtggttattttccaggtatcaatcaactttgtttggttcttatcagacagtggaactgatagagaccttcatgaattaccaggagaatataaaacgttgtgtctgcataatttatgatccttctagatccaaccaaggtgtcttagctttgaaagccttgaagctttctgattctttcatggaactctacaagagtaacaactttactggagagaagctgagagaaaagaatctttcatgggttgacatcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="+" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="121764" stop="124108"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122062" g_stop="122327" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="273" r_length="273" r_score="0.887"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122328" i_stop="123522" i_length="1195">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="123523" g_stop="123656" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="407" r_length="134" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="123657" i_stop="123771" i_length="115">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="123772" g_stop="123808" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="444" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="+" ref_id="SGN-E441509" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E441509" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122062" e_stop="122327"/>
          <exon e_start="123523" e_stop="123656"/>
          <exon e_start="123772" e_stop="123808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGAAAGTTATTATCAAAAAAGGGAGTAACAAAACTGTCATACATGTTAACAAT-AATAAAACTGTCTTACTTGTTACACAGTAGTGAGAAAGACATGAAAAGCTTGCTC----TACCTTTCTTTCCTACATAATTGTCATCTTAACTTTTAC-T-ATTACTAATTTGCTCATAATATGGACCTCATTGATGGTTATTTTCCAGGTATCAATCAACTTTGTTTGGTTCATATCAGACAGTGGAACTGATAGAGACCTTCATGAATTACCAGGTATCCATCTCTATGTCCATCTCTCATTGTTGGATTCTGAACTTTCAGTTTCTGCAGCGACCTTAGGTATACTGCACTTATCCTGCAAGTCATTTTCAGTTTAGATAATGTCATGTGGCAACCCCCTTTGTGCTGGCCCTAGGAAGAAAAGGGAGAAAGGATGAAATTAACAACACTGTAGAACTGTTTTTTGTAGTGATGCTAAATGAGTCCAAGGCATTCCAAACTGTGTTACCATTTTAGTAAAGTTTAAATACCTGGGCTCTATGCGTGATAGACCAGTGCATCATGCAAATGACCTGCAGATTAGCAAGACTAATGCCCTGAAGTTCTTTAACCACCCGTTTGCAGCTTAAGACTCGAACAAAATCTAGTGACTGATCAGACCGCCAACATATGTTAGGTAAAAGATAACTAAAACCTTGTTGCTCTAGTGGAATAACAAATGCAAAATGGTTTTTTTGTTAGCCTTTAATGAATGTAATTAGCTAAGGACAATGTAAATATACTTATCTTTCAATGGATGTAACCGTTTTGATTGGCAAGGATGAGGAAAAGCTCATGGAACCAGATCAAACCTATATGCAGGGAACGAGTCAAGTTTGAGTGTGAGCCTTGTAAATTTCAGATTCCAACAATCAATCATGTTGGATAGTGAACTTTGAAGAAATTAGAAAGTGATCATCCATTACCCAAAATTAGATAGTTTATGCCCCACACTTCAACAGGTACTGAAGGAGTAAATGATTTTTTTTGCGATAATGGAGGTATCTGGTTACCTAGCAAGGCAAGCCCCAAAGACAAGGATATGGAGTCCTTATTATTAAATGTAGCATGGAAATGTAATTCATGTTGGAATTTGAGGGGTAAAATTGCTGCTCAAGGTCCACTGAGATCAATTGCTTGAGTCAAACATCCATGAATAAGATCTTAAAGTCAAATGCCACTAGCTGTTGTCAATTCTTGCCTGAGTTATTTATTATCCTTTGCATGGAAAACCTACTAGCGTTCCTCATTTGTTGATCTTTTAAATATATAACACTTGGTACTGTAAATAAAGTAATATTCTTTCTGATTTTTTTCTTAATCTTTTTTCTTAAGATGTTGGCTTGAATAGGTGCTTCTGTATTTTTCATTAGTTGGTATTGGATGTGAACAATTCATTGTACTTAGACTCTGATGTTTGTGATTGCAGGAGAATATAAAACGTTGTGTCTGCATAATCTATGATCCTTCTAGATCCAACCAAGGTGTCTTAGCTTTGAAAGCCTTGAAGCTTTCTGATTCTTTCATGGAACTCTACAAGAGTAACAACTTTACTGGAGAGAAGTATGTTTATTCTCGAGTTGCTCCTTTTTTACATTCCCTCTCGAAATAGTTGTTGGTACTAGTTTAAGTAAAAGTAAACTCATTTTAATTTCTGATATTTGTTTTTTGGTTTTAGGCTGAGAGAAAAGAATCTTTCATGGGTTGACATCTTT</genome_strand>
        <mrna_strand>GGGAGAAAGTTATTATCAAAAAAGGGAGTAACAAAACTGTCATACATGTTAACATTAAAAAAAACTGTCTTATGCATTACACAGTAGTGAGAAAGACATGTAAAGCTTGCTCTATTTACCTTTCTTTCCTACATTATTGTCATCTTAACGTTTACTTCATTGCTAATTTGTTCATAATATGGATCTCATTGGTGGTTATTTTCCAGGTATCAATCAACTTTGTTTGGTTCTTATCAGACAGTGGAACTGATAGAGACCTTCATGAATTACCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAATATAAAACGTTGTGTCTGCATAATTTATGATCCTTCTAGATCCAACCAAGGTGTCTTAGCTTTGAAAGCCTTGAAGCTTTCTGATTCTTTCATGGAACTCTACAAGAGTAACAACTTTACTGGAGAGAA...................................................................................................................GCTGAGAGAAAAGAATCTTTCATGGGTTGACATCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E581588" ref_strand="+" ref_description="SGN-E581588 [6744]">
      <seq>ctttgtttggttcttatcagacagtggaactgatagagaccttcatgaattaccaggagaatattaaacgttgtgtctgtataatctatgatccttctagatccaaccaaggtgtcttagctttgaaagccttgaagctttctgattctttcatggaactctacaagagtaacaactttactggggagaagctgcagagaaaagaatctttcatgggttgacatctttgaagagataccaataaaagtttcgaattctgcactcattagtgcctttatgactgaattggaacccgatacacctgtaactcagtgtgattatgaacgcctacaattatcaaccaatccatatttggagaggaatgtggaatttttgattgaatgcatggatgacttgtcgatggaacagcaaaagttccaattctattaccggaatctttctcgtcaacaagctcagcagcaagcttggcttcaaaaagaggaggactgaggaacatggcacgtaaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="+" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="121972" stop="125175"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122272" g_stop="122327" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122328" i_stop="123522" i_length="1195">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="123523" g_stop="123656" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="190" r_length="134" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="123657" i_stop="123771" i_length="115">
            <donor d_prob="0.949" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="123772" g_stop="123820" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="240" r_length="50" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="123821" i_stop="124255" i_length="435">
            <donor d_prob="0.938" d_score="0.96"/>
            <acceptor a_prob="0.780" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="124256" g_stop="124327" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="312" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="124328" i_stop="124412" i_length="85">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.869" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="124413" g_stop="124514" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="414" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="124515" i_stop="124594" i_length="80">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="124595" g_stop="124662" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="483" r_length="69" r_score="0.956"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="124663" i_stop="124850" i_length="188">
            <donor d_prob="0.987" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="124851" g_stop="124875" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="509" r_length="26" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="+" ref_id="SGN-E581588" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E581588" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122272" e_stop="122327"/>
          <exon e_start="123523" e_stop="123656"/>
          <exon e_start="123772" e_stop="123820"/>
          <exon e_start="124256" e_stop="124327"/>
          <exon e_start="124413" e_stop="124514"/>
          <exon e_start="124595" e_stop="124662"/>
          <exon e_start="124851" e_stop="124875"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGTTTGGTTCATATCAGACAGTGGAACTGATAGAGACCTTCATGAATTACCAGGTATCCATCTCTATGTCCATCTCTCATTGTTGGATTCTGAACTTTCAGTTTCTGCAGCGACCTTAGGTATACTGCACTTATCCTGCAAGTCATTTTCAGTTTAGATAATGTCATGTGGCAACCCCCTTTGTGCTGGCCCTAGGAAGAAAAGGGAGAAAGGATGAAATTAACAACACTGTAGAACTGTTTTTTGTAGTGATGCTAAATGAGTCCAAGGCATTCCAAACTGTGTTACCATTTTAGTAAAGTTTAAATACCTGGGCTCTATGCGTGATAGACCAGTGCATCATGCAAATGACCTGCAGATTAGCAAGACTAATGCCCTGAAGTTCTTTAACCACCCGTTTGCAGCTTAAGACTCGAACAAAATCTAGTGACTGATCAGACCGCCAACATATGTTAGGTAAAAGATAACTAAAACCTTGTTGCTCTAGTGGAATAACAAATGCAAAATGGTTTTTTTGTTAGCCTTTAATGAATGTAATTAGCTAAGGACAATGTAAATATACTTATCTTTCAATGGATGTAACCGTTTTGATTGGCAAGGATGAGGAAAAGCTCATGGAACCAGATCAAACCTATATGCAGGGAACGAGTCAAGTTTGAGTGTGAGCCTTGTAAATTTCAGATTCCAACAATCAATCATGTTGGATAGTGAACTTTGAAGAAATTAGAAAGTGATCATCCATTACCCAAAATTAGATAGTTTATGCCCCACACTTCAACAGGTACTGAAGGAGTAAATGATTTTTTTTGCGATAATGGAGGTATCTGGTTACCTAGCAAGGCAAGCCCCAAAGACAAGGATATGGAGTCCTTATTATTAAATGTAGCATGGAAATGTAATTCATGTTGGAATTTGAGGGGTAAAATTGCTGCTCAAGGTCCACTGAGATCAATTGCTTGAGTCAAACATCCATGAATAAGATCTTAAAGTCAAATGCCACTAGCTGTTGTCAATTCTTGCCTGAGTTATTTATTATCCTTTGCATGGAAAACCTACTAGCGTTCCTCATTTGTTGATCTTTTAAATATATAACACTTGGTACTGTAAATAAAGTAATATTCTTTCTGATTTTTTTCTTAATCTTTTTTCTTAAGATGTTGGCTTGAATAGGTGCTTCTGTATTTTTCATTAGTTGGTATTGGATGTGAACAATTCATTGTACTTAGACTCTGATGTTTGTGATTGCAGGAGAATATAAAACGTTGTGTCTGCATAATCTATGATCCTTCTAGATCCAACCAAGGTGTCTTAGCTTTGAAAGCCTTGAAGCTTTCTGATTCTTTCATGGAACTCTACAAGAGTAACAACTTTACTGGAGAGAAGTATGTTTATTCTCGAGTTGCTCCTTTTTTACATTCCCTCTCGAAATAGTTGTTGGTACTAGTTTAAGTAAAAGTAAACTCATTTTAATTTCTGATATTTGTTTTTTGGTTTTAGGCTG-AGAGAAAAGAATCTTTCATGGGTTGACATCTTTGAAGAGATACCAGTATGATTCTTCTAACCATTTGTATTCTGTTTTCTCTTTGGCACTTGCATCATCATATGTAGATTCTTTTTCAAGTGACATTCTCTGCTTCAAAACCTGTTACCATTCTGCATGTCAGAGACAGTTGTATTCGTTTGGAGATCGGTTGTTTGAGAAAATAAAAATATAGTTCTGATACATTAGCCTTTTTTCCCTAGGGGACCCTTTTTCTTTTTTCCTTCGTTGTGTTCTTGAAAATAGTTCTTCCTCCTTTAAGATTTGATACGTGCATTGCTGCCACACATTTTCTTGGTTTGAACATTATTTTGAGTAATACCATCATCATATAGTGATTCTACCTGCCTGGTGTTAGTATAGGTACATTGTTCATAGGTTAGTAATTCAGCAGAAGTCTTCAACTTTACTGCAGAAGTTAATTTCGTCTTTTTTTTACAGATAAAAGTTTCAAATTCTGCACTCATTAGTGCCTTTATGACTGAATTGGAACCCGATACACCTGTAACTCAGGTAATGTAACTTAAGTTTGGCAGAATACTGAATATTTATATATGTGGCCAATCTGTAATACTGACAATTTTCTTCCTTTTGTCAGTGTGATTATGAACGCTTACAATTATCAACCAATCCATATTTGGAGAGGAATGTGGAATTTTTGATTGAATGCATGGATGACTTGTCGATGGAGCAGCAAAAGGTTTGTCTTTCCTCTTCCTGGGTCAATCTTTCCTTTTATTGTGTTGTGATTGTTTACTAACACTAGTGCTTTATTTGCAGTTCCAATTCTATTACCGGAATCTTTCTCGTCAACAAGCTCAGCAGCAAGCTTGGCTTC-AGAAGAGGAGGTATCTTTTTTATAATGGCATATTCGAGTAGTTTGTCACTTATTTAGATCCTCAGATGCTTTGTCACCTTGCGGTTAAGCTTGAATCTTTTGCTGTGCTATAATTCTGGCGAACTTTGTATATTATAATTCTTTATGATTAAAGATGCTTCGCTGTTCACATTTTGTACTGGCCTCTGTTATTTACAGGACTGA-GAACATGGCACGTAAAGCT</genome_strand>
        <mrna_strand>CTTTGTTTGGTTCTTATCAGACAGTGGAACTGATAGAGACCTTCATGAATTACCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAATATTAAACGTTGTGTCTGTATAATCTATGATCCTTCTAGATCCAACCAAGGTGTCTTAGCTTTGAAAGCCTTGAAGCTTTCTGATTCTTTCATGGAACTCTACAAGAGTAACAACTTTACTGGGGAGAA...................................................................................................................GCTGCAGAGAAAAGAATCTTTCATGGGTTGACATCTTTGAAGAGATACCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAAGTTTCGAATTCTGCACTCATTAGTGCCTTTATGACTGAATTGGAACCCGATACACCTGTAACTCAG.....................................................................................TGTGATTATGAACGCCTACAATTATCAACCAATCCATATTTGGAGAGGAATGTGGAATTTTTGATTGAATGCATGGATGACTTGTCGATGGAACAGCAAAAG................................................................................TTCCAATTCTATTACCGGAATCTTTCTCGTCAACAAGCTCAGCAGCAAGCTTGGCTTCAAAAAGAGGAG............................................................................................................................................................................................GACTGAGGAACATGGCACGTAAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E727526" ref_strand="+" ref_description="SGN-E727526 [LA14DH02]">
      <seq>agacagtggaactgatagagaccttcttgaattaccaggagaatataaaacgttgtgtctgcataatctatgatccttctagatccaaccaaggtgtcttatctttgaaagccttgaagctttctgattctttcatggaactctacaagagtaacaactttactggagagaagctgagagaaaagaatctttcatgggttgacatctttgaagagataccaataaaagtttcgaattctgcactcattaatgcctttatgactgaattggaacccgatacacctgtaactcagtgtgattatgaacgcttacaattatcaaccaatccatatttggagaggaatgtggaatttttgattgaatgcatggatgacttgtcgatggagcagcaaaagttccaattctattaccggaatctttctcgtcaacaagctcagcagcaagcttggcttcagaagaggaggactgagaacatggcacgtaaagctgcaggagaagagctactgccagaagaggatccctctaatcctgtctttaagccactcccagagccctcacggttggatagctttctcataactaatcaaatttcagattactgcaaccagattaatggagttgcgggacaaagcctcactagactacatctgatgaaggctttgcacgagaactgagcaagttttgcgttggcaatttgtaccttagatttttgtgcctttttttcaactatactgatgtgagagggaaagacaatgacctttatctctgttacgtgtctttaggttttgcttttacattcttctatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="+" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="121990" stop="125604"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122290" g_stop="122327" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122328" i_stop="123522" i_length="1195">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="123523" g_stop="123656" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="172" r_length="134" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="123657" i_stop="123771" i_length="115">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="123772" g_stop="123820" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="221" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="123821" i_stop="124255" i_length="435">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.780" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="124256" g_stop="124327" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="293" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="124328" i_stop="124412" i_length="85">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.869" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="124413" g_stop="124514" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="395" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="124515" i_stop="124594" i_length="80">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="124595" g_stop="124662" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="463" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="124663" i_stop="124850" i_length="188">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="124851" g_stop="125003" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="616" r_length="153" r_score="0.993"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="125004" i_stop="125111" i_length="108">
            <donor d_prob="0.899" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="125112" g_stop="125304" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="617" r_stop="808" r_length="192" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="+" ref_id="SGN-E727526" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>809</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727526" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122290" e_stop="122327"/>
          <exon e_start="123523" e_stop="123656"/>
          <exon e_start="123772" e_stop="123820"/>
          <exon e_start="124256" e_stop="124327"/>
          <exon e_start="124413" e_stop="124514"/>
          <exon e_start="124595" e_stop="124662"/>
          <exon e_start="124851" e_stop="125003"/>
          <exon e_start="125112" e_stop="125304"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACAGTGGAACTGATAGAGACCTTCATGAATTACCAGGTATCCATCTCTATGTCCATCTCTCATTGTTGGATTCTGAACTTTCAGTTTCTGCAGCGACCTTAGGTATACTGCACTTATCCTGCAAGTCATTTTCAGTTTAGATAATGTCATGTGGCAACCCCCTTTGTGCTGGCCCTAGGAAGAAAAGGGAGAAAGGATGAAATTAACAACACTGTAGAACTGTTTTTTGTAGTGATGCTAAATGAGTCCAAGGCATTCCAAACTGTGTTACCATTTTAGTAAAGTTTAAATACCTGGGCTCTATGCGTGATAGACCAGTGCATCATGCAAATGACCTGCAGATTAGCAAGACTAATGCCCTGAAGTTCTTTAACCACCCGTTTGCAGCTTAAGACTCGAACAAAATCTAGTGACTGATCAGACCGCCAACATATGTTAGGTAAAAGATAACTAAAACCTTGTTGCTCTAGTGGAATAACAAATGCAAAATGGTTTTTTTGTTAGCCTTTAATGAATGTAATTAGCTAAGGACAATGTAAATATACTTATCTTTCAATGGATGTAACCGTTTTGATTGGCAAGGATGAGGAAAAGCTCATGGAACCAGATCAAACCTATATGCAGGGAACGAGTCAAGTTTGAGTGTGAGCCTTGTAAATTTCAGATTCCAACAATCAATCATGTTGGATAGTGAACTTTGAAGAAATTAGAAAGTGATCATCCATTACCCAAAATTAGATAGTTTATGCCCCACACTTCAACAGGTACTGAAGGAGTAAATGATTTTTTTTGCGATAATGGAGGTATCTGGTTACCTAGCAAGGCAAGCCCCAAAGACAAGGATATGGAGTCCTTATTATTAAATGTAGCATGGAAATGTAATTCATGTTGGAATTTGAGGGGTAAAATTGCTGCTCAAGGTCCACTGAGATCAATTGCTTGAGTCAAACATCCATGAATAAGATCTTAAAGTCAAATGCCACTAGCTGTTGTCAATTCTTGCCTGAGTTATTTATTATCCTTTGCATGGAAAACCTACTAGCGTTCCTCATTTGTTGATCTTTTAAATATATAACACTTGGTACTGTAAATAAAGTAATATTCTTTCTGATTTTTTTCTTAATCTTTTTTCTTAAGATGTTGGCTTGAATAGGTGCTTCTGTATTTTTCATTAGTTGGTATTGGATGTGAACAATTCATTGTACTTAGACTCTGATGTTTGTGATTGCAGGAGAATATAAAACGTTGTGTCTGCATAATCTATGATCCTTCTAGATCCAACCAAGGTGTCTTAGCTTTGAAAGCCTTGAAGCTTTCTGATTCTTTCATGGAACTCTACAAGAGTAACAACTTTACTGGAGAGAAGTATGTTTATTCTCGAGTTGCTCCTTTTTTACATTCCCTCTCGAAATAGTTGTTGGTACTAGTTTAAGTAAAAGTAAACTCATTTTAATTTCTGATATTTGTTTTTTGGTTTTAGGCTGAGAGAAAAGAATCTTTCATGGGTTGACATCTTTGAAGAGATACCAGTATGATTCTTCTAACCATTTGTATTCTGTTTTCTCTTTGGCACTTGCATCATCATATGTAGATTCTTTTTCAAGTGACATTCTCTGCTTCAAAACCTGTTACCATTCTGCATGTCAGAGACAGTTGTATTCGTTTGGAGATCGGTTGTTTGAGAAAATAAAAATATAGTTCTGATACATTAGCCTTTTTTCCCTAGGGGACCCTTTTTCTTTTTTCCTTCGTTGTGTTCTTGAAAATAGTTCTTCCTCCTTTAAGATTTGATACGTGCATTGCTGCCACACATTTTCTTGGTTTGAACATTATTTTGAGTAATACCATCATCATATAGTGATTCTACCTGCCTGGTGTTAGTATAGGTACATTGTTCATAGGTTAGTAATTCAGCAGAAGTCTTCAACTTTACTGCAGAAGTTAATTTCGTCTTTTTTTTACAGATAAAAGTTTCAAATTCTGCACTCATTAGTGCCTTTATGACTGAATTGGAACCCGATACACCTGTAACTCAGGTAATGTAACTTAAGTTTGGCAGAATACTGAATATTTATATATGTGGCCAATCTGTAATACTGACAATTTTCTTCCTTTTGTCAGTGTGATTATGAACGCTTACAATTATCAACCAATCCATATTTGGAGAGGAATGTGGAATTTTTGATTGAATGCATGGATGACTTGTCGATGGAGCAGCAAAAGGTTTGTCTTTCCTCTTCCTGGGTCAATCTTTCCTTTTATTGTGTTGTGATTGTTTACTAACACTAGTGCTTTATTTGCAGTTCCAATTCTATTACCGGAATCTTTCTCGTCAACAAGCTCAGCAGCAAGCTTGGCTTCAGAAGAGGAGGTATCTTTTTTATAATGGCATATTCGAGTAGTTTGTCACTTATTTAGATCCTCAGATGCTTTGTCACCTTGCGGTTAAGCTTGAATCTTTTGCTGTGCTATAATTCTGGCGAACTTTGTATATTATAATTCTTTATGATTAAAGATGCTTCGCTGTTCACATTTTGTACTGGCCTCTGTTATTTACAGGACTGAGAACATGGCACGTAAAGCTGCAGGAGAAGAGCTACTGCCAGAAGAGGATCCCTCTAATCCTGTCTTTAAGCCACTCCCAGAGCCCTCACGGTTGGATAGCTTTCTCATAACTAATCAAATTTCAAATTACTGCAACCAGATTAATGGGTAAGTTGCGGTCTTGTTTGCCATTATCTTTTCTGTTGCTGGGTTTTTTTTTCTAGCCTGTGATATTTCGTTTCTTCTTGTATGAACTTGTTTATATGTTGATTGCAGAGTTGCGGGACAAAGCCTCAGTAGACTACATCTGATGAAGGCTTTGCACGAGAACTGAGCAAGTTTTGCGTTGGCAATTTGTACCTTAGATTTTTGTGCCTTTTTTTTCAACTTTACTGATGTGAGAGGGAAAGAGAATGACCTTTATCTCTGTTAGGTGTCTTTAGTTTTTGCTTTTACATTCTTCTATGAT</genome_strand>
        <mrna_strand>AGACAGTGGAACTGATAGAGACCTTCTTGAATTACCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAATATAAAACGTTGTGTCTGCATAATCTATGATCCTTCTAGATCCAACCAAGGTGTCTTATCTTTGAAAGCCTTGAAGCTTTCTGATTCTTTCATGGAACTCTACAAGAGTAACAACTTTACTGGAGAGAA...................................................................................................................GCTGAGAGAAAAGAATCTTTCATGGGTTGACATCTTTGAAGAGATACCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAAGTTTCGAATTCTGCACTCATTAATGCCTTTATGACTGAATTGGAACCCGATACACCTGTAACTCAG.....................................................................................TGTGATTATGAACGCTTACAATTATCAACCAATCCATATTTGGAGAGGAATGTGGAATTTTTGATTGAATGCATGGATGACTTGTCGATGGAGCAGCAAAAG................................................................................TTCCAATTCTATTACCGGAATCTTTCTCGTCAACAAGCTCAGCAGCAAGCTTGGCTTCAGAAGAGGAG............................................................................................................................................................................................GACTGAGAACATGGCACGTAAAGCTGCAGGAGAAGAGCTACTGCCAGAAGAGGATCCCTCTAATCCTGTCTTTAAGCCACTCCCAGAGCCCTCACGGTTGGATAGCTTTCTCATAACTAATCAAATTTCAGATTACTGCAACCAGATTAATGG............................................................................................................AGTTGCGGGACAAAGCCTCACTAGACTACATCTGATGAAGGCTTTGCACGAGAACTGAGCAAGTTTTGCGTTGGCAATTTGTACCTTAGATTTTTGTGCC-TTTTTTTCAACTATACTGATGTGAGAGGGAAAGACAATGACCTTTATCTCTGTTACGTGTCTTTAGGTTTTGCTTTTACATTCTTCTATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E581589" ref_strand="+" ref_description="SGN-E581589 [6744]">
      <seq>agtggaactgatagagacttcatgaattaccaggagaatattaaacgttgtgtctgtataatctatgatccttctagatccaaccaaggtgtcttagctttgaaagccttgaagctttctgattctttcatggaactctacaagagtaacaactttactggggagaagctgagagaaaagaatctttcatgggttgacatctttgaagagataccaataaaagtttcgaattctgcactcattagtgcctttatgactgaattggaacccgatacacctgtaactcagtgtgattatgaacgcctacaattatcaaccaatccatatttggagaggaatgtggaatttttgattgaatgcatggatgacttgtcgatggaacagcaaaagttccaattctattaccggaatctttctcgtcaacaagctcagcagcaagcttggcttcaaaagaggaggactgagaacatggcacgtaaagctgcaggagaagagctactgccagaagaggatccctctaatcctgtctttaagccactcccagagccttcacggttggatagctttctcataactaatcaaatttcaaattactgcaaccagattaatggagttgcgggacaaagcctcagtagactacatctgatgaaggctttgcacgaggaactgagcaagttttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="+" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="121994" stop="125479"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122294" g_stop="122327" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122328" i_stop="123522" i_length="1195">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="123523" g_stop="123656" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="167" r_length="134" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="123657" i_stop="123771" i_length="115">
            <donor d_prob="0.949" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="123772" g_stop="123820" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="216" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="123821" i_stop="124255" i_length="435">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.780" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="124256" g_stop="124327" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="288" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="124328" i_stop="124412" i_length="85">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.869" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="124413" g_stop="124514" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="390" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="124515" i_stop="124594" i_length="80">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="124595" g_stop="124662" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="458" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="124663" i_stop="124850" i_length="188">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="124851" g_stop="125003" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="611" r_length="153" r_score="0.993"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="125004" i_stop="125111" i_length="108">
            <donor d_prob="0.899" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="125112" g_stop="125180" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="612" r_stop="681" r_length="70" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="+" ref_id="SGN-E581589" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E581589" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122294" e_stop="122327"/>
          <exon e_start="123523" e_stop="123656"/>
          <exon e_start="123772" e_stop="123820"/>
          <exon e_start="124256" e_stop="124327"/>
          <exon e_start="124413" e_stop="124514"/>
          <exon e_start="124595" e_stop="124662"/>
          <exon e_start="124851" e_stop="125003"/>
          <exon e_start="125112" e_stop="125180"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGGAACTGATAGAGACCTTCATGAATTACCAGGTATCCATCTCTATGTCCATCTCTCATTGTTGGATTCTGAACTTTCAGTTTCTGCAGCGACCTTAGGTATACTGCACTTATCCTGCAAGTCATTTTCAGTTTAGATAATGTCATGTGGCAACCCCCTTTGTGCTGGCCCTAGGAAGAAAAGGGAGAAAGGATGAAATTAACAACACTGTAGAACTGTTTTTTGTAGTGATGCTAAATGAGTCCAAGGCATTCCAAACTGTGTTACCATTTTAGTAAAGTTTAAATACCTGGGCTCTATGCGTGATAGACCAGTGCATCATGCAAATGACCTGCAGATTAGCAAGACTAATGCCCTGAAGTTCTTTAACCACCCGTTTGCAGCTTAAGACTCGAACAAAATCTAGTGACTGATCAGACCGCCAACATATGTTAGGTAAAAGATAACTAAAACCTTGTTGCTCTAGTGGAATAACAAATGCAAAATGGTTTTTTTGTTAGCCTTTAATGAATGTAATTAGCTAAGGACAATGTAAATATACTTATCTTTCAATGGATGTAACCGTTTTGATTGGCAAGGATGAGGAAAAGCTCATGGAACCAGATCAAACCTATATGCAGGGAACGAGTCAAGTTTGAGTGTGAGCCTTGTAAATTTCAGATTCCAACAATCAATCATGTTGGATAGTGAACTTTGAAGAAATTAGAAAGTGATCATCCATTACCCAAAATTAGATAGTTTATGCCCCACACTTCAACAGGTACTGAAGGAGTAAATGATTTTTTTTGCGATAATGGAGGTATCTGGTTACCTAGCAAGGCAAGCCCCAAAGACAAGGATATGGAGTCCTTATTATTAAATGTAGCATGGAAATGTAATTCATGTTGGAATTTGAGGGGTAAAATTGCTGCTCAAGGTCCACTGAGATCAATTGCTTGAGTCAAACATCCATGAATAAGATCTTAAAGTCAAATGCCACTAGCTGTTGTCAATTCTTGCCTGAGTTATTTATTATCCTTTGCATGGAAAACCTACTAGCGTTCCTCATTTGTTGATCTTTTAAATATATAACACTTGGTACTGTAAATAAAGTAATATTCTTTCTGATTTTTTTCTTAATCTTTTTTCTTAAGATGTTGGCTTGAATAGGTGCTTCTGTATTTTTCATTAGTTGGTATTGGATGTGAACAATTCATTGTACTTAGACTCTGATGTTTGTGATTGCAGGAGAATATAAAACGTTGTGTCTGCATAATCTATGATCCTTCTAGATCCAACCAAGGTGTCTTAGCTTTGAAAGCCTTGAAGCTTTCTGATTCTTTCATGGAACTCTACAAGAGTAACAACTTTACTGGAGAGAAGTATGTTTATTCTCGAGTTGCTCCTTTTTTACATTCCCTCTCGAAATAGTTGTTGGTACTAGTTTAAGTAAAAGTAAACTCATTTTAATTTCTGATATTTGTTTTTTGGTTTTAGGCTGAGAGAAAAGAATCTTTCATGGGTTGACATCTTTGAAGAGATACCAGTATGATTCTTCTAACCATTTGTATTCTGTTTTCTCTTTGGCACTTGCATCATCATATGTAGATTCTTTTTCAAGTGACATTCTCTGCTTCAAAACCTGTTACCATTCTGCATGTCAGAGACAGTTGTATTCGTTTGGAGATCGGTTGTTTGAGAAAATAAAAATATAGTTCTGATACATTAGCCTTTTTTCCCTAGGGGACCCTTTTTCTTTTTTCCTTCGTTGTGTTCTTGAAAATAGTTCTTCCTCCTTTAAGATTTGATACGTGCATTGCTGCCACACATTTTCTTGGTTTGAACATTATTTTGAGTAATACCATCATCATATAGTGATTCTACCTGCCTGGTGTTAGTATAGGTACATTGTTCATAGGTTAGTAATTCAGCAGAAGTCTTCAACTTTACTGCAGAAGTTAATTTCGTCTTTTTTTTACAGATAAAAGTTTCAAATTCTGCACTCATTAGTGCCTTTATGACTGAATTGGAACCCGATACACCTGTAACTCAGGTAATGTAACTTAAGTTTGGCAGAATACTGAATATTTATATATGTGGCCAATCTGTAATACTGACAATTTTCTTCCTTTTGTCAGTGTGATTATGAACGCTTACAATTATCAACCAATCCATATTTGGAGAGGAATGTGGAATTTTTGATTGAATGCATGGATGACTTGTCGATGGAGCAGCAAAAGGTTTGTCTTTCCTCTTCCTGGGTCAATCTTTCCTTTTATTGTGTTGTGATTGTTTACTAACACTAGTGCTTTATTTGCAGTTCCAATTCTATTACCGGAATCTTTCTCGTCAACAAGCTCAGCAGCAAGCTTGGCTTCAGAAGAGGAGGTATCTTTTTTATAATGGCATATTCGAGTAGTTTGTCACTTATTTAGATCCTCAGATGCTTTGTCACCTTGCGGTTAAGCTTGAATCTTTTGCTGTGCTATAATTCTGGCGAACTTTGTATATTATAATTCTTTATGATTAAAGATGCTTCGCTGTTCACATTTTGTACTGGCCTCTGTTATTTACAGGACTGAGAACATGGCACGTAAAGCTGCAGGAGAAGAGCTACTGCCAGAAGAGGATCCCTCTAATCCTGTCTTTAAGCCACTCCCAGAGCCCTCACGGTTGGATAGCTTTCTCATAACTAATCAAATTTCAAATTACTGCAACCAGATTAATGGGTAAGTTGCGGTCTTGTTTGCCATTATCTTTTCTGTTGCTGGGTTTTTTTTTCTAGCCTGTGATATTTCGTTTCTTCTTGTATGAACTTGTTTATATGTTGATTGCAGAGTTGCGGGACAAAGCCTCAGTAGACTACATCTGATGAAGGCTTTGCACGA-GAACTGAGCAAGTTTTGC</genome_strand>
        <mrna_strand>AGTGGAACTGATAGAGA-CTTCATGAATTACCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAATATTAAACGTTGTGTCTGTATAATCTATGATCCTTCTAGATCCAACCAAGGTGTCTTAGCTTTGAAAGCCTTGAAGCTTTCTGATTCTTTCATGGAACTCTACAAGAGTAACAACTTTACTGGGGAGAA...................................................................................................................GCTGAGAGAAAAGAATCTTTCATGGGTTGACATCTTTGAAGAGATACCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAAGTTTCGAATTCTGCACTCATTAGTGCCTTTATGACTGAATTGGAACCCGATACACCTGTAACTCAG.....................................................................................TGTGATTATGAACGCCTACAATTATCAACCAATCCATATTTGGAGAGGAATGTGGAATTTTTGATTGAATGCATGGATGACTTGTCGATGGAACAGCAAAAG................................................................................TTCCAATTCTATTACCGGAATCTTTCTCGTCAACAAGCTCAGCAGCAAGCTTGGCTTCAAAAGAGGAG............................................................................................................................................................................................GACTGAGAACATGGCACGTAAAGCTGCAGGAGAAGAGCTACTGCCAGAAGAGGATCCCTCTAATCCTGTCTTTAAGCCACTCCCAGAGCCTTCACGGTTGGATAGCTTTCTCATAACTAATCAAATTTCAAATTACTGCAACCAGATTAATGG............................................................................................................AGTTGCGGGACAAAGCCTCAGTAGACTACATCTGATGAAGGCTTTGCACGAGGAACTGAGCAAGTTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E696207" ref_strand="+" ref_description="SGN-E696207 [LH_Ea08I13](-)">
      <seq>gattctttcatggaactctacaagagtaacaactttactggagagaagctgagagaaaagaatctttcatgggttgacatctttgaagagataccaataaaagtttcgaattctgcactcattagtgcctttatgactgaattggaacccgatacacctgtaactcagtgtgattatgaacgcttacaattatcaaccaatccatatttggagaggaatgtggaatttttgattgaatgcatggatgacttgtcgatggagcagcaaaagttccaattctattaccggaatctttctcgtcaacaagctcagcagcaagcttggcttcagaagaggaggactgagaacatggcacgtaaagctgcaggagaagagctactgccagaagaggatccctctaatcctgtctttaagccactcccagagccctcacggttggatagctttctcataactaatcaaatttcaaattactgcaaccagattaatggagttgcgggacaaagcctcagtagactacatctgatgaaggctttgcacgagaactgagcaagttttgcgttggcaatttgtaccttagatttttgtgccttttttttcaacttactgatgtgagagggaaagagaatgacctttatctctgttaggtgtctttctttctttaatttttgcttttacattcttctatgattggcaatcaagtgtagcctaccttgaatcatatatgtgaagatttacatctagtccacaaagaaggaatagggatatgtgtatcgatgaccttattgttttttgatcgattgtttaagatggaagattaaaaatctctcaattaccctcaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="+" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="123310" stop="125759"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123610" g_stop="123656" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123657" i_stop="123771" i_length="115">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="123772" g_stop="123820" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="96" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="123821" i_stop="124255" i_length="435">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.780" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124256" g_stop="124327" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="168" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="124328" i_stop="124412" i_length="85">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.869" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="124413" g_stop="124514" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="270" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="124515" i_stop="124594" i_length="80">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="124595" g_stop="124662" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="338" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="124663" i_stop="124850" i_length="188">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="124851" g_stop="125003" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="491" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="125004" i_stop="125111" i_length="108">
            <donor d_prob="0.899" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="125112" g_stop="125460" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="846" r_length="355" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="+" ref_id="SGN-E696207" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>840</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E696207" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123610" e_stop="123656"/>
          <exon e_start="123772" e_stop="123820"/>
          <exon e_start="124256" e_stop="124327"/>
          <exon e_start="124413" e_stop="124514"/>
          <exon e_start="124595" e_stop="124662"/>
          <exon e_start="124851" e_stop="125003"/>
          <exon e_start="125112" e_stop="125460"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTCTTTCATGGAACTCTACAAGAGTAACAACTTTACTGGAGAGAAGTATGTTTATTCTCGAGTTGCTCCTTTTTTACATTCCCTCTCGAAATAGTTGTTGGTACTAGTTTAAGTAAAAGTAAACTCATTTTAATTTCTGATATTTGTTTTTTGGTTTTAGGCTGAGAGAAAAGAATCTTTCATGGGTTGACATCTTTGAAGAGATACCAGTATGATTCTTCTAACCATTTGTATTCTGTTTTCTCTTTGGCACTTGCATCATCATATGTAGATTCTTTTTCAAGTGACATTCTCTGCTTCAAAACCTGTTACCATTCTGCATGTCAGAGACAGTTGTATTCGTTTGGAGATCGGTTGTTTGAGAAAATAAAAATATAGTTCTGATACATTAGCCTTTTTTCCCTAGGGGACCCTTTTTCTTTTTTCCTTCGTTGTGTTCTTGAAAATAGTTCTTCCTCCTTTAAGATTTGATACGTGCATTGCTGCCACACATTTTCTTGGTTTGAACATTATTTTGAGTAATACCATCATCATATAGTGATTCTACCTGCCTGGTGTTAGTATAGGTACATTGTTCATAGGTTAGTAATTCAGCAGAAGTCTTCAACTTTACTGCAGAAGTTAATTTCGTCTTTTTTTTACAGATAAAAGTTTCAAATTCTGCACTCATTAGTGCCTTTATGACTGAATTGGAACCCGATACACCTGTAACTCAGGTAATGTAACTTAAGTTTGGCAGAATACTGAATATTTATATATGTGGCCAATCTGTAATACTGACAATTTTCTTCCTTTTGTCAGTGTGATTATGAACGCTTACAATTATCAACCAATCCATATTTGGAGAGGAATGTGGAATTTTTGATTGAATGCATGGATGACTTGTCGATGGAGCAGCAAAAGGTTTGTCTTTCCTCTTCCTGGGTCAATCTTTCCTTTTATTGTGTTGTGATTGTTTACTAACACTAGTGCTTTATTTGCAGTTCCAATTCTATTACCGGAATCTTTCTCGTCAACAAGCTCAGCAGCAAGCTTGGCTTCAGAAGAGGAGGTATCTTTTTTATAATGGCATATTCGAGTAGTTTGTCACTTATTTAGATCCTCAGATGCTTTGTCACCTTGCGGTTAAGCTTGAATCTTTTGCTGTGCTATAATTCTGGCGAACTTTGTATATTATAATTCTTTATGATTAAAGATGCTTCGCTGTTCACATTTTGTACTGGCCTCTGTTATTTACAGGACTGAGAACATGGCACGTAAAGCTGCAGGAGAAGAGCTACTGCCAGAAGAGGATCCCTCTAATCCTGTCTTTAAGCCACTCCCAGAGCCCTCACGGTTGGATAGCTTTCTCATAACTAATCAAATTTCAAATTACTGCAACCAGATTAATGGGTAAGTTGCGGTCTTGTTTGCCATTATCTTTTCTGTTGCTGGGTTTTTTTTTCTAGCCTGTGATATTTCGTTTCTTCTTGTATGAACTTGTTTATATGTTGATTGCAGAGTTGCGGGACAAAGCCTCAGTAGACTACATCTGATGAAGGCTTTGCACGAGAACTGAGCAAGTTTTGCGTTGGCAATTTGTACCTTAGATTTTTGTGCCTTTTTTTTCAACTTTACTGATGTGAGAGGGAAAGAGAATGACCTTTATCTCTGTTAGGTG--------TCTTTAGTTTTTGCTTTTACATTCTTCTATGATTGGCAATCAAGTGTAGCCTACCTTGAATCATATATGTGAAGATTTACATCTAGTCCACAGAGAAGGAATAGGGATCTATGTATCGATGACCTTATTGTTTTTTGATCGATTGTGTGGAAATGGAAGATTAAAAATCTCTCAATTACCCTCATTAAT</genome_strand>
        <mrna_strand>GATTCTTTCATGGAACTCTACAAGAGTAACAACTTTACTGGAGAGAA...................................................................................................................GCTGAGAGAAAAGAATCTTTCATGGGTTGACATCTTTGAAGAGATACCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAAGTTTCGAATTCTGCACTCATTAGTGCCTTTATGACTGAATTGGAACCCGATACACCTGTAACTCAG.....................................................................................TGTGATTATGAACGCTTACAATTATCAACCAATCCATATTTGGAGAGGAATGTGGAATTTTTGATTGAATGCATGGATGACTTGTCGATGGAGCAGCAAAAG................................................................................TTCCAATTCTATTACCGGAATCTTTCTCGTCAACAAGCTCAGCAGCAAGCTTGGCTTCAGAAGAGGAG............................................................................................................................................................................................GACTGAGAACATGGCACGTAAAGCTGCAGGAGAAGAGCTACTGCCAGAAGAGGATCCCTCTAATCCTGTCTTTAAGCCACTCCCAGAGCCCTCACGGTTGGATAGCTTTCTCATAACTAATCAAATTTCAAATTACTGCAACCAGATTAATGG............................................................................................................AGTTGCGGGACAAAGCCTCAGTAGACTACATCTGATGAAGGCTTTGCACGAGAACTGAGCAAGTTTTGCGTTGGCAATTTGTACCTTAGATTTTTGTGCCTTTTTTTTCAAC-TTACTGATGTGAGAGGGAAAGAGAATGACCTTTATCTCTGTTAGGTGTCTTTCTTTCTTTAATTTTTGCTTTTACATTCTTCTATGATTGGCAATCAAGTGTAGCCTACCTTGAATCATATATGTGAAGATTTACATCTAGTCCACAAAGAAGGAATAGGGATATGTGTATCGATGACCTTATTGTTTTTTGATCGATTGT-TTAAGATGGAAGATTAAAAATCTCTCAATTACCCTCAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E692367" ref_strand="+" ref_description="SGN-E692367 [LH_Ea08I13]">
      <seq>tattctttcatggaactctacaagagtaacaactttactggagagaagctgagagaaaagaatctttcatgggttgacatctttgaagagataccaataaaagtttcgaattctgcactcattagtgcctttatgactgaattggaacccgatacacctgtaactcagtgtgattatgaacgcttacaattatcaaccaatccatatttggagaggaatgtggaatttttgattgaatgcatggatgacttgtcgatggagcagcaaaagttccaattctattaccggaatctttctcgtcaacaagctcagcagcaagcttggcttcagaagaggaggactgagaacatggcacgtaaagctgcaggagaagagctactgccagaagaggatccctctaatcctgtctttaagccactcccagagccctcacggttggatagctttctcataactaatcaaatttcaaattactgcaaccagattaatggagttgcgggacaaagcctcagtagactacatctgatgaaggctttgcacgagaactgagcaagttttgcgttggcaatttgtaccttagatttttgtgccttttttttcaacttactgatgtgagagggaaagagaatgacctttatctctgttaggtgtctttctttctttaatttttgcttttacattcttctatgattggcaatcaagtgtagcctaccttgaatcatatatgtgaagatttacatctagtccacaaagaaggaatagggatctatgtatcgatgaccttattgttttttgatcgattgtctggaaatggaagattaaaaatctctcaattaccctcaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="+" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="123311" stop="125759"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123610" g_stop="123656" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123657" i_stop="123771" i_length="115">
            <donor d_prob="0.949" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="123772" g_stop="123820" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="96" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="123821" i_stop="124255" i_length="435">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.780" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124256" g_stop="124327" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="168" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="124328" i_stop="124412" i_length="85">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.869" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="124413" g_stop="124514" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="270" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="124515" i_stop="124594" i_length="80">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="124595" g_stop="124662" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="338" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="124663" i_stop="124850" i_length="188">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="124851" g_stop="125003" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="491" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="125004" i_stop="125111" i_length="108">
            <donor d_prob="0.899" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="125112" g_stop="125460" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="847" r_length="356" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="+" ref_id="SGN-E692367" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>840</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E692367" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123610" e_stop="123656"/>
          <exon e_start="123772" e_stop="123820"/>
          <exon e_start="124256" e_stop="124327"/>
          <exon e_start="124413" e_stop="124514"/>
          <exon e_start="124595" e_stop="124662"/>
          <exon e_start="124851" e_stop="125003"/>
          <exon e_start="125112" e_stop="125460"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTCTTTCATGGAACTCTACAAGAGTAACAACTTTACTGGAGAGAAGTATGTTTATTCTCGAGTTGCTCCTTTTTTACATTCCCTCTCGAAATAGTTGTTGGTACTAGTTTAAGTAAAAGTAAACTCATTTTAATTTCTGATATTTGTTTTTTGGTTTTAGGCTGAGAGAAAAGAATCTTTCATGGGTTGACATCTTTGAAGAGATACCAGTATGATTCTTCTAACCATTTGTATTCTGTTTTCTCTTTGGCACTTGCATCATCATATGTAGATTCTTTTTCAAGTGACATTCTCTGCTTCAAAACCTGTTACCATTCTGCATGTCAGAGACAGTTGTATTCGTTTGGAGATCGGTTGTTTGAGAAAATAAAAATATAGTTCTGATACATTAGCCTTTTTTCCCTAGGGGACCCTTTTTCTTTTTTCCTTCGTTGTGTTCTTGAAAATAGTTCTTCCTCCTTTAAGATTTGATACGTGCATTGCTGCCACACATTTTCTTGGTTTGAACATTATTTTGAGTAATACCATCATCATATAGTGATTCTACCTGCCTGGTGTTAGTATAGGTACATTGTTCATAGGTTAGTAATTCAGCAGAAGTCTTCAACTTTACTGCAGAAGTTAATTTCGTCTTTTTTTTACAGATAAAAGTTTCAAATTCTGCACTCATTAGTGCCTTTATGACTGAATTGGAACCCGATACACCTGTAACTCAGGTAATGTAACTTAAGTTTGGCAGAATACTGAATATTTATATATGTGGCCAATCTGTAATACTGACAATTTTCTTCCTTTTGTCAGTGTGATTATGAACGCTTACAATTATCAACCAATCCATATTTGGAGAGGAATGTGGAATTTTTGATTGAATGCATGGATGACTTGTCGATGGAGCAGCAAAAGGTTTGTCTTTCCTCTTCCTGGGTCAATCTTTCCTTTTATTGTGTTGTGATTGTTTACTAACACTAGTGCTTTATTTGCAGTTCCAATTCTATTACCGGAATCTTTCTCGTCAACAAGCTCAGCAGCAAGCTTGGCTTCAGAAGAGGAGGTATCTTTTTTATAATGGCATATTCGAGTAGTTTGTCACTTATTTAGATCCTCAGATGCTTTGTCACCTTGCGGTTAAGCTTGAATCTTTTGCTGTGCTATAATTCTGGCGAACTTTGTATATTATAATTCTTTATGATTAAAGATGCTTCGCTGTTCACATTTTGTACTGGCCTCTGTTATTTACAGGACTGAGAACATGGCACGTAAAGCTGCAGGAGAAGAGCTACTGCCAGAAGAGGATCCCTCTAATCCTGTCTTTAAGCCACTCCCAGAGCCCTCACGGTTGGATAGCTTTCTCATAACTAATCAAATTTCAAATTACTGCAACCAGATTAATGGGTAAGTTGCGGTCTTGTTTGCCATTATCTTTTCTGTTGCTGGGTTTTTTTTTCTAGCCTGTGATATTTCGTTTCTTCTTGTATGAACTTGTTTATATGTTGATTGCAGAGTTGCGGGACAAAGCCTCAGTAGACTACATCTGATGAAGGCTTTGCACGAGAACTGAGCAAGTTTTGCGTTGGCAATTTGTACCTTAGATTTTTGTGCCTTTTTTTTCAACTTTACTGATGTGAGAGGGAAAGAGAATGACCTTTATCTCTGTTAGGTG--------TCTTTAGTTTTTGCTTTTACATTCTTCTATGATTGGCAATCAAGTGTAGCCTACCTTGAATCATATATGTGAAGATTTACATCTAGTCCACAGAGAAGGAATAGGGATCTATGTATCGATGACCTTATTGTTTTTTGATCGATTGTGTGGAAATGGAAGATTAAAAATCTCTCAATTACCCTCATTAAT</genome_strand>
        <mrna_strand>TATTCTTTCATGGAACTCTACAAGAGTAACAACTTTACTGGAGAGAA...................................................................................................................GCTGAGAGAAAAGAATCTTTCATGGGTTGACATCTTTGAAGAGATACCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAAGTTTCGAATTCTGCACTCATTAGTGCCTTTATGACTGAATTGGAACCCGATACACCTGTAACTCAG.....................................................................................TGTGATTATGAACGCTTACAATTATCAACCAATCCATATTTGGAGAGGAATGTGGAATTTTTGATTGAATGCATGGATGACTTGTCGATGGAGCAGCAAAAG................................................................................TTCCAATTCTATTACCGGAATCTTTCTCGTCAACAAGCTCAGCAGCAAGCTTGGCTTCAGAAGAGGAG............................................................................................................................................................................................GACTGAGAACATGGCACGTAAAGCTGCAGGAGAAGAGCTACTGCCAGAAGAGGATCCCTCTAATCCTGTCTTTAAGCCACTCCCAGAGCCCTCACGGTTGGATAGCTTTCTCATAACTAATCAAATTTCAAATTACTGCAACCAGATTAATGG............................................................................................................AGTTGCGGGACAAAGCCTCAGTAGACTACATCTGATGAAGGCTTTGCACGAGAACTGAGCAAGTTTTGCGTTGGCAATTTGTACCTTAGATTTTTGTGCCTTTTTTTTCAAC-TTACTGATGTGAGAGGGAAAGAGAATGACCTTTATCTCTGTTAGGTGTCTTTCTTTCTTTAATTTTTGCTTTTACATTCTTCTATGATTGGCAATCAAGTGTAGCCTACCTTGAATCATATATGTGAAGATTTACATCTAGTCCACAAAGAAGGAATAGGGATCTATGTATCGATGACCTTATTGTTTTTTGATCGATTGTCTGGAAATGGAAGATTAAAAATCTCTCAATTACCCTCAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E243251" ref_strand="+" ref_description="SGN-E243251 [cLEE-2-F18]">
      <seq>tttactggagagaagctgagagaaaagaatctttcatgggttgacatctttgaagagataccaataaaagtttcaaattctgcactcattagtgcctttatgactgaattggaacccgatacacctgtaactcagtgtgattatgaacgcttacaattatcaaccaatccatatttggagaggaatgtggaatttttgattgaatgcatggatgacttgtcgatggagcagcaaaagttccaattctattaccggaatctttctcgtcaacaagctcagcagcaagcttggcttcagaagaggaggactgagaacatggcacgtaaagctgcaggagaagagctactgccagaagaggatccctctaatcctgtctttaagccactcccagagccctcacggttggatagctttctcataactaatcaaatttcaaattactgcaaccagattaatggagttgcgggacaaagcctcagtagactacatctgatgaaggctttgcacgagaactgagcaagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="+" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="123470" stop="125476"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123643" g_stop="123656" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123657" i_stop="123771" i_length="115">
            <donor d_prob="0.949" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="123772" g_stop="123820" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="63" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="123821" i_stop="124255" i_length="435">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.780" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124256" g_stop="124327" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="135" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="124328" i_stop="124412" i_length="85">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.869" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="124413" g_stop="124514" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="237" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="124515" i_stop="124594" i_length="80">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="124595" g_stop="124662" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="305" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="124663" i_stop="124850" i_length="188">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="124851" g_stop="125003" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="458" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="125004" i_stop="125111" i_length="108">
            <donor d_prob="0.899" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="125112" g_stop="125176" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="523" r_length="65" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="+" ref_id="SGN-E243251" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243251" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123643" e_stop="123656"/>
          <exon e_start="123772" e_stop="123820"/>
          <exon e_start="124256" e_stop="124327"/>
          <exon e_start="124413" e_stop="124514"/>
          <exon e_start="124595" e_stop="124662"/>
          <exon e_start="124851" e_stop="125003"/>
          <exon e_start="125112" e_stop="125176"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTACTGGAGAGAAGTATGTTTATTCTCGAGTTGCTCCTTTTTTACATTCCCTCTCGAAATAGTTGTTGGTACTAGTTTAAGTAAAAGTAAACTCATTTTAATTTCTGATATTTGTTTTTTGGTTTTAGGCTGAGAGAAAAGAATCTTTCATGGGTTGACATCTTTGAAGAGATACCAGTATGATTCTTCTAACCATTTGTATTCTGTTTTCTCTTTGGCACTTGCATCATCATATGTAGATTCTTTTTCAAGTGACATTCTCTGCTTCAAAACCTGTTACCATTCTGCATGTCAGAGACAGTTGTATTCGTTTGGAGATCGGTTGTTTGAGAAAATAAAAATATAGTTCTGATACATTAGCCTTTTTTCCCTAGGGGACCCTTTTTCTTTTTTCCTTCGTTGTGTTCTTGAAAATAGTTCTTCCTCCTTTAAGATTTGATACGTGCATTGCTGCCACACATTTTCTTGGTTTGAACATTATTTTGAGTAATACCATCATCATATAGTGATTCTACCTGCCTGGTGTTAGTATAGGTACATTGTTCATAGGTTAGTAATTCAGCAGAAGTCTTCAACTTTACTGCAGAAGTTAATTTCGTCTTTTTTTTACAGATAAAAGTTTCAAATTCTGCACTCATTAGTGCCTTTATGACTGAATTGGAACCCGATACACCTGTAACTCAGGTAATGTAACTTAAGTTTGGCAGAATACTGAATATTTATATATGTGGCCAATCTGTAATACTGACAATTTTCTTCCTTTTGTCAGTGTGATTATGAACGCTTACAATTATCAACCAATCCATATTTGGAGAGGAATGTGGAATTTTTGATTGAATGCATGGATGACTTGTCGATGGAGCAGCAAAAGGTTTGTCTTTCCTCTTCCTGGGTCAATCTTTCCTTTTATTGTGTTGTGATTGTTTACTAACACTAGTGCTTTATTTGCAGTTCCAATTCTATTACCGGAATCTTTCTCGTCAACAAGCTCAGCAGCAAGCTTGGCTTCAGAAGAGGAGGTATCTTTTTTATAATGGCATATTCGAGTAGTTTGTCACTTATTTAGATCCTCAGATGCTTTGTCACCTTGCGGTTAAGCTTGAATCTTTTGCTGTGCTATAATTCTGGCGAACTTTGTATATTATAATTCTTTATGATTAAAGATGCTTCGCTGTTCACATTTTGTACTGGCCTCTGTTATTTACAGGACTGAGAACATGGCACGTAAAGCTGCAGGAGAAGAGCTACTGCCAGAAGAGGATCCCTCTAATCCTGTCTTTAAGCCACTCCCAGAGCCCTCACGGTTGGATAGCTTTCTCATAACTAATCAAATTTCAAATTACTGCAACCAGATTAATGGGTAAGTTGCGGTCTTGTTTGCCATTATCTTTTCTGTTGCTGGGTTTTTTTTTCTAGCCTGTGATATTTCGTTTCTTCTTGTATGAACTTGTTTATATGTTGATTGCAGAGTTGCGGGACAAAGCCTCAGTAGACTACATCTGATGAAGGCTTTGCACGAGAACTGAGCAAGTT</genome_strand>
        <mrna_strand>TTTACTGGAGAGAA...................................................................................................................GCTGAGAGAAAAGAATCTTTCATGGGTTGACATCTTTGAAGAGATACCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAAGTTTCAAATTCTGCACTCATTAGTGCCTTTATGACTGAATTGGAACCCGATACACCTGTAACTCAG.....................................................................................TGTGATTATGAACGCTTACAATTATCAACCAATCCATATTTGGAGAGGAATGTGGAATTTTTGATTGAATGCATGGATGACTTGTCGATGGAGCAGCAAAAG................................................................................TTCCAATTCTATTACCGGAATCTTTCTCGTCAACAAGCTCAGCAGCAAGCTTGGCTTCAGAAGAGGAG............................................................................................................................................................................................GACTGAGAACATGGCACGTAAAGCTGCAGGAGAAGAGCTACTGCCAGAAGAGGATCCCTCTAATCCTGTCTTTAAGCCACTCCCAGAGCCCTCACGGTTGGATAGCTTTCTCATAACTAATCAAATTTCAAATTACTGCAACCAGATTAATGG............................................................................................................AGTTGCGGGACAAAGCCTCAGTAGACTACATCTGATGAAGGCTTTGCACGAGAACTGAGCAAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E560217" ref_strand="-" ref_description="SGN-E560217 [19837]">
      <seq>cgatacacctgtaactcagtgtgattatgaacgcctacaattatcaaccaatccatatttggagaggaatgtggaatttttgattgaatgcatggatgacttgtcaatggaacagcaaaagttccaattctattaccggaatctttctcgtcaacaagctcagcagcaagcttggcttcaaaagaggaggactgagaacatggcacgtaaagctgcaggagaagagctactgccagaagaggatccctctaatcctgtctttaagccactcccagagccttcacggttggatagctttctcataactaatcaaatttcaaattactgcaaccagattaatggagttgcgggacaaagcctcagtagactacatctcgatgaaggctttgcacgagaactgagcaagttttgagttggcaatttgtaccttagatttgatttttgtgccttttttttaaattactgatgtgagagggaaagagaatgacctttatctctgtaggcgtcttattctttctgtagttttacttttatattcttctgtgattggcaatcaagtgtagcctgcctggaattatatatgtgaagatttacatctagtccaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="+" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="124009" stop="125663"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124309" g_stop="124327" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="124328" i_stop="124412" i_length="85">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.869" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="124413" g_stop="124514" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="121" r_length="102" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="124515" i_stop="124594" i_length="80">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124595" g_stop="124662" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="189" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="124663" i_stop="124850" i_length="188">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="124851" g_stop="125003" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="342" r_length="153" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="125004" i_stop="125111" i_length="108">
            <donor d_prob="0.899" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="125112" g_stop="125363" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="606" r_length="264" r_score="0.833"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="+" ref_id="SGN-E560217" ref_strand="-">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E560217" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="124309" e_stop="124327"/>
          <exon e_start="124413" e_stop="124514"/>
          <exon e_start="124595" e_stop="124662"/>
          <exon e_start="124851" e_stop="125003"/>
          <exon e_start="125112" e_stop="125363"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATACACCTGTAACTCAGGTAATGTAACTTAAGTTTGGCAGAATACTGAATATTTATATATGTGGCCAATCTGTAATACTGACAATTTTCTTCCTTTTGTCAGTGTGATTATGAACGCTTACAATTATCAACCAATCCATATTTGGAGAGGAATGTGGAATTTTTGATTGAATGCATGGATGACTTGTCGATGGAGCAGCAAAAGGTTTGTCTTTCCTCTTCCTGGGTCAATCTTTCCTTTTATTGTGTTGTGATTGTTTACTAACACTAGTGCTTTATTTGCAGTTCCAATTCTATTACCGGAATCTTTCTCGTCAACAAGCTCAGCAGCAAGCTTGGCTTCAGAAGAGGAGGTATCTTTTTTATAATGGCATATTCGAGTAGTTTGTCACTTATTTAGATCCTCAGATGCTTTGTCACCTTGCGGTTAAGCTTGAATCTTTTGCTGTGCTATAATTCTGGCGAACTTTGTATATTATAATTCTTTATGATTAAAGATGCTTCGCTGTTCACATTTTGTACTGGCCTCTGTTATTTACAGGACTGAGAACATGGCACGTAAAGCTGCAGGAGAAGAGCTACTGCCAGAAGAGGATCCCTCTAATCCTGTCTTTAAGCCACTCCCAGAGCCCTCACGGTTGGATAGCTTTCTCATAACTAATCAAATTTCAAATTACTGCAACCAGATTAATGGGTAAGTTGCGGTCTTGTTTGCCATTATCTTTTCTGTTGCTGGGTTTTTTTTTCTAGCCTGTGATATTTCGTTTCTTCTTGTATGAACTTGTTTATATGTTGATTGCAGAGTTGCGGGACAAAGCCTCAGTAGACTACATCT-GATGAAGGCTTTGCACGAGAACTGAGCAAGTTTTGCGTTGGCAATTTGTACCTT--A---GATTTTTGTGCCTTTTTTTTCAACTTTACTGATGTGAGAGGGAAAGAGAATGACCTTTATCTCTGTTAG-G---T-GTCTTT-AGT--TTTTGCTTTTACATTCTTCTATGATTGGCAATCAAGTGTAGCCTACCTTGAATCATATATGTGAAGATTTACATCTAGTCCACA</genome_strand>
        <mrna_strand>CGATACACCTGTAACTCAG.....................................................................................TGTGATTATGAACGCCTACAATTATCAACCAATCCATATTTGGAGAGGAATGTGGAATTTTTGATTGAATGCATGGATGACTTGTCAATGGAACAGCAAAAG................................................................................TTCCAATTCTATTACCGGAATCTTTCTCGTCAACAAGCTCAGCAGCAAGCTTGGCTTCAAAAGAGGAG............................................................................................................................................................................................GACTGAGAACATGGCACGTAAAGCTGCAGGAGAAGAGCTACTGCCAGAAGAGGATCCCTCTAATCCTGTCTTTAAGCCACTCCCAGAGCCTTCACGGTTGGATAGCTTTCTCATAACTAATCAAATTTCAAATTACTGCAACCAGATTAATGG............................................................................................................AGTTGCGGGACAAAGCCTCAGTAGACTACATCTCGATGAAGGCTTTGCACGAGAACTGAGCAAGTTTTGAGTTGGCAATTTGTACCTTAGATTTGATTTTTGTGCCTTTTTTTT-AA-ATTACTGATGTGAGAGGGAAAGAGAATGACCTTTATCTCTGTAGGCGTCTTATTCTTTCTGTAGTTTTACTTTTATATTCTTCTGTGATTGGCAATCAAGTGTAGCCTGCCTGGAATTATATATGTGAAGATTTACATCTAGTCCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E421248" ref_strand="+" ref_description="SGN-E421248 [STM-32-F9]">
      <seq>cacctgtgactcagtgtgattatgaacgcctacaattatcaaccaatccatatttggagaggaatgtggaatttttgattgaatgcatggatgacttgtcgatggaacagcaaaagttccaattctattaccgtaatctttctcgtcaacaagctcagcagcaagcttggcttcaaaagaggaggactgagaacatggcacgtaaagctgctggagaagagctactgccagaagaggatccctctaatcccgtctttaagccactcccagagccctcacggctggatagctttctcataactaatcagatttcaaattactgcaaccagattaatggagttgcgggacaaagcctcagtagactacatctgatgaaggctttgcacgataactgagcaagttttgagttggcaatttgtaccttagatttttgtgcccttttttttgacttactgatgtgagagggaaagagaatgacctttatctctgtaggcgtcttattctttctttagtttttgcttttacattcttctatgattggcaatcaagtgtagcctgctggaattatatatgtgaagatttancactagtccacaaagaaggatanggatctatgtatcgatgaccttatcggtttttgatcaattgtctggaaatggaagattaaaaaatctcccaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="+" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="124109" stop="125746"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124314" g_stop="124327" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="124328" i_stop="124412" i_length="85">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.869" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="124413" g_stop="124514" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="116" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="124515" i_stop="124594" i_length="80">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124595" g_stop="124662" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="184" r_length="68" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="124663" i_stop="124850" i_length="188">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="124851" g_stop="125003" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="337" r_length="153" r_score="0.974"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="125004" i_stop="125111" i_length="108">
            <donor d_prob="0.899" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="125112" g_stop="125437" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="669" r_length="332" r_score="0.874"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="678" polyA_stop="689"/>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="+" ref_id="SGN-E421248" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E421248" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124314" e_stop="124327"/>
          <exon e_start="124413" e_stop="124514"/>
          <exon e_start="124595" e_stop="124662"/>
          <exon e_start="124851" e_stop="125003"/>
          <exon e_start="125112" e_stop="125437"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCTGTAACTCAGGTAATGTAACTTAAGTTTGGCAGAATACTGAATATTTATATATGTGGCCAATCTGTAATACTGACAATTTTCTTCCTTTTGTCAGTGTGATTATGAACGCTTACAATTATCAACCAATCCATATTTGGAGAGGAATGTGGAATTTTTGATTGAATGCATGGATGACTTGTCGATGGAGCAGCAAAAGGTTTGTCTTTCCTCTTCCTGGGTCAATCTTTCCTTTTATTGTGTTGTGATTGTTTACTAACACTAGTGCTTTATTTGCAGTTCCAATTCTATTACCGGAATCTTTCTCGTCAACAAGCTCAGCAGCAAGCTTGGCTTCAGAAGAGGAGGTATCTTTTTTATAATGGCATATTCGAGTAGTTTGTCACTTATTTAGATCCTCAGATGCTTTGTCACCTTGCGGTTAAGCTTGAATCTTTTGCTGTGCTATAATTCTGGCGAACTTTGTATATTATAATTCTTTATGATTAAAGATGCTTCGCTGTTCACATTTTGTACTGGCCTCTGTTATTTACAGGACTGAGAACATGGCACGTAAAGCTGCAGGAGAAGAGCTACTGCCAGAAGAGGATCCCTCTAATCCTGTCTTTAAGCCACTCCCAGAGCCCTCACGGTTGGATAGCTTTCTCATAACTAATCAAATTTCAAATTACTGCAACCAGATTAATGGGTAAGTTGCGGTCTTGTTTGCCATTATCTTTTCTGTTGCTGGGTTTTTTTTTCTAGCCTGTGATATTTCGTTTCTTCTTGTATGAACTTGTTTATATGTTGATTGCAGAGTTGCGGGACAAAGCCTCAGTAGACTACATCTGATGAAGGCTTTGCACGAGAACTGAGCAAGTTTTGCGTTGGCAATTTGTACCTTAGATTTTTGTGCCTTTTTTTTCAACTTTACTGATGTGAGAGGGAAAGAGAATGACCTTTATCTC--T-G-----TTA-GGTGTCTTTAGTTTTTGCTTTTACATTCTTCTATGATTGGCAATCAAGTGTAGCCTACCTTGAATCATATATGTGAAGATTTACATCTAGTCCACAGAGAAGGAATAGGGATCTATGTATCGATGACCTTATTGTTTTTTGATCGATTGTGTGGAAATGGAAGATTAAAA</genome_strand>
        <mrna_strand>CACCTGTGACTCAG.....................................................................................TGTGATTATGAACGCCTACAATTATCAACCAATCCATATTTGGAGAGGAATGTGGAATTTTTGATTGAATGCATGGATGACTTGTCGATGGAACAGCAAAAG................................................................................TTCCAATTCTATTACCGTAATCTTTCTCGTCAACAAGCTCAGCAGCAAGCTTGGCTTCAAAAGAGGAG............................................................................................................................................................................................GACTGAGAACATGGCACGTAAAGCTGCTGGAGAAGAGCTACTGCCAGAAGAGGATCCCTCTAATCCCGTCTTTAAGCCACTCCCAGAGCCCTCACGGCTGGATAGCTTTCTCATAACTAATCAGATTTCAAATTACTGCAACCAGATTAATGG............................................................................................................AGTTGCGGGACAAAGCCTCAGTAGACTACATCTGATGAAGGCTTTGCACGATAACTGAGCAAGTTTTGAGTTGGCAATTTGTACCTTAGATTTTTGTGCCCTTTTTTTTGAC-TTACTGATGTGAGAGGGAAAGAGAATGACCTTTATCTCTGTAGGCGTCTTATTCTTTCTTTAGTTTTTGCTTTTACATTCTTCTATGATTGGCAATCAAGTGTAGCCT-GCTGGAATTATATATGTGAAGATTTANCACTAGTCCACAAAGAAGG-ATANGGATCTATGTATCGATGACCTTATCGGTTTTTGATCAATTGTCTGGAAATGGAAGATTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E452960" ref_strand="-" ref_description="SGN-E452960 [cSTS-18-O16]">
      <seq>gtaactcagtgtgattatgaacgccntacaattatcaaccaatccatatttggagaggaatgtggaatttttgattgaatgcatggatgacttgtcaatggaacagcaaaagttccaattctattaccggaatctttctcgtcaacaagctcagcagcaagcttggcttcaaaagaggaggactgagaacatggcacgtaaagctgcaggagaagagctactgccagaagaggatccctctaatcctgtctttaagccactcccagagccttcacggttggatagctttctcataactaatcaaatttcaaattactgcaaccagattaatggagttgcgggacaaagcctcagtagactacatctgatgaaggctttgcacgagaactgagcaagttttgagttggcaatttgtaccttagatttgatttttgtgccttttttttaaattactgatgtgagagggaaagagaatgacctttatctctgtaggcgtcttattctttctgtagttttacttttatattcttctgtgattggcaatcaagtgtagcctgcctggaattatatatgtgaagatttacatctagtccacaaagaaggaatagggatctatgtatcgatgaccttatcatttttgatcgattgtctggatatggaagattaaaaatctctcaattaaaaaaaaaaaaaaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="+" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="124109" stop="125749"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124319" g_stop="124327" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="9" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="124328" i_stop="124412" i_length="85">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.869" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="124413" g_stop="124514" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="112" r_length="103" r_score="0.951"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="124515" i_stop="124594" i_length="80">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124595" g_stop="124662" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="180" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="124663" i_stop="124850" i_length="188">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="124851" g_stop="125003" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="333" r_length="153" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="125004" i_stop="125111" i_length="108">
            <donor d_prob="0.899" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="125112" g_stop="125460" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="692" r_length="359" r_score="0.845"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="+" ref_id="SGN-E452960" ref_strand="-">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E452960" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="124319" e_stop="124327"/>
          <exon e_start="124413" e_stop="124514"/>
          <exon e_start="124595" e_stop="124662"/>
          <exon e_start="124851" e_stop="125003"/>
          <exon e_start="125112" e_stop="125460"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAACTCAGGTAATGTAACTTAAGTTTGGCAGAATACTGAATATTTATATATGTGGCCAATCTGTAATACTGACAATTTTCTTCCTTTTGTCAGTGTGATTATGAACG-CTTACAATTATCAACCAATCCATATTTGGAGAGGAATGTGGAATTTTTGATTGAATGCATGGATGACTTGTCGATGGAGCAGCAAAAGGTTTGTCTTTCCTCTTCCTGGGTCAATCTTTCCTTTTATTGTGTTGTGATTGTTTACTAACACTAGTGCTTTATTTGCAGTTCCAATTCTATTACCGGAATCTTTCTCGTCAACAAGCTCAGCAGCAAGCTTGGCTTCAGAAGAGGAGGTATCTTTTTTATAATGGCATATTCGAGTAGTTTGTCACTTATTTAGATCCTCAGATGCTTTGTCACCTTGCGGTTAAGCTTGAATCTTTTGCTGTGCTATAATTCTGGCGAACTTTGTATATTATAATTCTTTATGATTAAAGATGCTTCGCTGTTCACATTTTGTACTGGCCTCTGTTATTTACAGGACTGAGAACATGGCACGTAAAGCTGCAGGAGAAGAGCTACTGCCAGAAGAGGATCCCTCTAATCCTGTCTTTAAGCCACTCCCAGAGCCCTCACGGTTGGATAGCTTTCTCATAACTAATCAAATTTCAAATTACTGCAACCAGATTAATGGGTAAGTTGCGGTCTTGTTTGCCATTATCTTTTCTGTTGCTGGGTTTTTTTTTCTAGCCTGTGATATTTCGTTTCTTCTTGTATGAACTTGTTTATATGTTGATTGCAGAGTTGCGGGACAAAGCCTCAGTAGACTACATCTGATGAAGGCTTTGCACGAGAACTGAGCAAGTTTTGCGTTGGCAATTTGTACCTT--A---GATTTTTGTGCCTTTTTTTTCAACTTTACTGATGTGAGAGGGAAAGAGAATGACCTTTATCTCTGTTAG-G---T-GTCTTT-AGT--TTTTGCTTTTACATTCTTCTATGATTGGCAATCAAGTGTAGCCTACCTTGAATCATATATGTGAAGATTTACATCTAGTCCACAGAGAAGGAATAGGGATCTATGTATCGATGACCTTATTGTTTTTTGATCGATTGTGTGGAAATGGAAGATTAAAAATCTCTCAATTACCCTCATTAAT</genome_strand>
        <mrna_strand>GTAACTCAG.....................................................................................TGTGATTATGAACGCCNTACAATTATCAACCAATCCATATTTGGAGAGGAATGTGGAATTTTTGATTGAATGCATGGATGACTTGTCAATGGAACAGCAAAAG................................................................................TTCCAATTCTATTACCGGAATCTTTCTCGTCAACAAGCTCAGCAGCAAGCTTGGCTTCAAAAGAGGAG............................................................................................................................................................................................GACTGAGAACATGGCACGTAAAGCTGCAGGAGAAGAGCTACTGCCAGAAGAGGATCCCTCTAATCCTGTCTTTAAGCCACTCCCAGAGCCTTCACGGTTGGATAGCTTTCTCATAACTAATCAAATTTCAAATTACTGCAACCAGATTAATGG............................................................................................................AGTTGCGGGACAAAGCCTCAGTAGACTACATCTGATGAAGGCTTTGCACGAGAACTGAGCAAGTTTTGAGTTGGCAATTTGTACCTTAGATTTGATTTTTGTGCCTTTTTTTT-AA-ATTACTGATGTGAGAGGGAAAGAGAATGACCTTTATCTCTGTAGGCGTCTTATTCTTTCTGTAGTTTTACTTTTATATTCTTCTGTGATTGGCAATCAAGTGTAGCCTGCCTGGAATTATATATGTGAAGATTTACATCTAGTCCACAAAGAAGGAATAGGGATCTATGTATCGATGACCTTA-TCATTTTTGATCGATTGTCTGGATATGGAAGATTAAAAATCTCTCAATTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E598422" ref_strand="-" ref_description="SGN-E598422 [74094]">
      <seq>ctttctcgtcaacaagctcagcagcaagcttggcttcaaaagaggaggactgagaacatggcacgtaaagctgcaggagaagagctactgccagaagaggatccctctaatcctgtctttaagccactcccagagccttcacggttggatagctttctcataactaatcaaatttcaaattactgcaaccagattaatggagttgcgggacaaagcctcagtagactacatctgatgaaggctttgcacgagaactgagcaagttttgagttggcaatttgtaccttagatttgatttttgtgccttttttttaaattactgatgtgagagggaaagagaatgacctttatctctgtaggcgtcttattctttctgtagttttacttttatattcttctgtgattggcaatcaagtgtagcctgcctggaattatatatgtgaagatttacatctagtccacaaagaaggaatagggatctatgtatcgatgaccttatcatttttgatcgaaaaaaaaaaaaaaaaaactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="+" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="124316" stop="125713"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124616" g_stop="124662" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="124663" i_stop="124850" i_length="188">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="124851" g_stop="125003" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="200" r_length="153" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125004" i_stop="125111" i_length="108">
            <donor d_prob="0.899" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="125112" g_stop="125412" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="511" r_length="311" r_score="0.854"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="512" polyA_stop="530"/>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="+" ref_id="SGN-E598422" ref_strand="-">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E598422" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="124616" e_stop="124662"/>
          <exon e_start="124851" e_stop="125003"/>
          <exon e_start="125112" e_stop="125412"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCTCGTCAACAAGCTCAGCAGCAAGCTTGGCTTCAGAAGAGGAGGTATCTTTTTTATAATGGCATATTCGAGTAGTTTGTCACTTATTTAGATCCTCAGATGCTTTGTCACCTTGCGGTTAAGCTTGAATCTTTTGCTGTGCTATAATTCTGGCGAACTTTGTATATTATAATTCTTTATGATTAAAGATGCTTCGCTGTTCACATTTTGTACTGGCCTCTGTTATTTACAGGACTGAGAACATGGCACGTAAAGCTGCAGGAGAAGAGCTACTGCCAGAAGAGGATCCCTCTAATCCTGTCTTTAAGCCACTCCCAGAGCCCTCACGGTTGGATAGCTTTCTCATAACTAATCAAATTTCAAATTACTGCAACCAGATTAATGGGTAAGTTGCGGTCTTGTTTGCCATTATCTTTTCTGTTGCTGGGTTTTTTTTTCTAGCCTGTGATATTTCGTTTCTTCTTGTATGAACTTGTTTATATGTTGATTGCAGAGTTGCGGGACAAAGCCTCAGTAGACTACATCTGATGAAGGCTTTGCACGAGAACTGAGCAAGTTTTGCGTTGGCAATTTGTACCTT--A---GATTTTTGTGCCTTTTTTTTCAACTTTACTGATGTGAGAGGGAAAGAGAATGACCTTTATCTCTGTTAG-G---T-GTCTTT-AGT--TTTTGCTTTTACATTCTTCTATGATTGGCAATCAAGTGTAGCCTACCTTGAATCATATATGTGAAGATTTACATCTAGTCCACAGAGAAGGAATAGGGATCTATGTATCGATGACCTTATTGTTTTTTGATCG</genome_strand>
        <mrna_strand>CTTTCTCGTCAACAAGCTCAGCAGCAAGCTTGGCTTCAAAAGAGGAG............................................................................................................................................................................................GACTGAGAACATGGCACGTAAAGCTGCAGGAGAAGAGCTACTGCCAGAAGAGGATCCCTCTAATCCTGTCTTTAAGCCACTCCCAGAGCCTTCACGGTTGGATAGCTTTCTCATAACTAATCAAATTTCAAATTACTGCAACCAGATTAATGG............................................................................................................AGTTGCGGGACAAAGCCTCAGTAGACTACATCTGATGAAGGCTTTGCACGAGAACTGAGCAAGTTTTGAGTTGGCAATTTGTACCTTAGATTTGATTTTTGTGCCTTTTTTTT-AA-ATTACTGATGTGAGAGGGAAAGAGAATGACCTTTATCTCTGTAGGCGTCTTATTCTTTCTGTAGTTTTACTTTTATATTCTTCTGTGATTGGCAATCAAGTGTAGCCTGCCTGGAATTATATATGTGAAGATTTACATCTAGTCCACAAAGAAGGAATAGGGATCTATGTATCGATGACCTTA-TCATTTTTGATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E553967" ref_strand="+" ref_description="SGN-E553967 [cTSC-2-M24]">
      <seq>ggatccctctaatcctgtctttaagccactcccagagccctcacggttggatagctttctcataactaatcaaatttcaaattactgcaaccagattaatggagttgcgggacaaagcctcagtagactacatctgatgaaggctttgcacgagaactgagcaagttttgcgttggcaatttgtaccttagatttttgtgccttttttttcaactttactgatgtgagagggaaagagaatgacctttatctctgttaggtgtctttagtttttgcttttacattcttctatgattggcaatcaagtgtagcctaccttgaatcatatatgtgaagatttacatctagtccacagagaaggaatagggatctatgtatcgatgaccttattgttttttgatcgattgtgtggaaatggaagattaaaaatctctcaattaccctcattcaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="+" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="124602" stop="125759"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124902" g_stop="125003" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="125004" i_stop="125111" i_length="108">
            <donor d_prob="0.899" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125112" g_stop="125460" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="451" r_length="349" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="+" ref_id="SGN-E553967" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E553967" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124902" e_stop="125003"/>
          <exon e_start="125112" e_stop="125460"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATCCCTCTAATCCTGTCTTTAAGCCACTCCCAGAGCCCTCACGGTTGGATAGCTTTCTCATAACTAATCAAATTTCAAATTACTGCAACCAGATTAATGGGTAAGTTGCGGTCTTGTTTGCCATTATCTTTTCTGTTGCTGGGTTTTTTTTTCTAGCCTGTGATATTTCGTTTCTTCTTGTATGAACTTGTTTATATGTTGATTGCAGAGTTGCGGGACAAAGCCTCAGTAGACTACATCTGATGAAGGCTTTGCACGAGAACTGAGCAAGTTTTGCGTTGGCAATTTGTACCTTAGATTTTTGTGCCTTTTTTTTCAACTTTACTGATGTGAGAGGGAAAGAGAATGACCTTTATCTCTGTTAGGTGTCTTTAGTTTTTGCTTTTACATTCTTCTATGATTGGCAATCAAGTGTAGCCTACCTTGAATCATATATGTGAAGATTTACATCTAGTCCACAGAGAAGGAATAGGGATCTATGTATCGATGACCTTATTGTTTTTTGATCGATTGTGTGGAAATGGAAGATTAAAAATCTCTCAATTACCCTCATTAAT</genome_strand>
        <mrna_strand>GGATCCCTCTAATCCTGTCTTTAAGCCACTCCCAGAGCCCTCACGGTTGGATAGCTTTCTCATAACTAATCAAATTTCAAATTACTGCAACCAGATTAATGG............................................................................................................AGTTGCGGGACAAAGCCTCAGTAGACTACATCTGATGAAGGCTTTGCACGAGAACTGAGCAAGTTTTGCGTTGGCAATTTGTACCTTAGATTTTTGTGCCTTTTTTTTCAACTTTACTGATGTGAGAGGGAAAGAGAATGACCTTTATCTCTGTTAGGTGTCTTTAGTTTTTGCTTTTACATTCTTCTATGATTGGCAATCAAGTGTAGCCTACCTTGAATCATATATGTGAAGATTTACATCTAGTCCACAGAGAAGGAATAGGGATCTATGTATCGATGACCTTATTGTTTTTTGATCGATTGTGTGGAAATGGAAGATTAAAAATCTCTCAATTACCCTCATTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E553141" ref_strand="+" ref_description="SGN-E553141 [cTSB-1-M24]">
      <seq>ggatccctctaatcctgtctttaagccactcccagagccctcacggttggatagctttctcataactaatcaaatttcaaattactgcaaccagattaatggagttgcgggacaaagcctcagtagactacatctgatgaaggctttgcacgagaactgagcaagttttgcgttggcaatttgtaccttagatttttgtgccttttttttcaactttactgatgtgagagggaaagagaatgacctttatctctgttaggtgtctttagtttttgcttttacattcttctatgattggcaatcaagtgtagcctaccttgaatcatatatgtgaagatttacatctagtccacagagaaggaatagggatctatgtatcgatgaccttattgttttttgatcgattgtgtggaaatggaagattaaaaatctctcaattaccctcattaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="+" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="124602" stop="125759"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124902" g_stop="125003" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="125004" i_stop="125111" i_length="108">
            <donor d_prob="0.899" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125112" g_stop="125460" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="451" r_length="349" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="452" polyA_stop="473"/>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="+" ref_id="SGN-E553141" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E553141" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124902" e_stop="125003"/>
          <exon e_start="125112" e_stop="125460"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATCCCTCTAATCCTGTCTTTAAGCCACTCCCAGAGCCCTCACGGTTGGATAGCTTTCTCATAACTAATCAAATTTCAAATTACTGCAACCAGATTAATGGGTAAGTTGCGGTCTTGTTTGCCATTATCTTTTCTGTTGCTGGGTTTTTTTTTCTAGCCTGTGATATTTCGTTTCTTCTTGTATGAACTTGTTTATATGTTGATTGCAGAGTTGCGGGACAAAGCCTCAGTAGACTACATCTGATGAAGGCTTTGCACGAGAACTGAGCAAGTTTTGCGTTGGCAATTTGTACCTTAGATTTTTGTGCCTTTTTTTTCAACTTTACTGATGTGAGAGGGAAAGAGAATGACCTTTATCTCTGTTAGGTGTCTTTAGTTTTTGCTTTTACATTCTTCTATGATTGGCAATCAAGTGTAGCCTACCTTGAATCATATATGTGAAGATTTACATCTAGTCCACAGAGAAGGAATAGGGATCTATGTATCGATGACCTTATTGTTTTTTGATCGATTGTGTGGAAATGGAAGATTAAAAATCTCTCAATTACCCTCATTAAT</genome_strand>
        <mrna_strand>GGATCCCTCTAATCCTGTCTTTAAGCCACTCCCAGAGCCCTCACGGTTGGATAGCTTTCTCATAACTAATCAAATTTCAAATTACTGCAACCAGATTAATGG............................................................................................................AGTTGCGGGACAAAGCCTCAGTAGACTACATCTGATGAAGGCTTTGCACGAGAACTGAGCAAGTTTTGCGTTGGCAATTTGTACCTTAGATTTTTGTGCCTTTTTTTTCAACTTTACTGATGTGAGAGGGAAAGAGAATGACCTTTATCTCTGTTAGGTGTCTTTAGTTTTTGCTTTTACATTCTTCTATGATTGGCAATCAAGTGTAGCCTACCTTGAATCATATATGTGAAGATTTACATCTAGTCCACAGAGAAGGAATAGGGATCTATGTATCGATGACCTTATTGTTTTTTGATCGATTGTGTGGAAATGGAAGATTAAAAATCTCTCAATTACCCTCATTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E238812" ref_strand="+" ref_description="SGN-E238812 [cLEL-9-N13](-)">
      <seq>ggcacgagctacatctgatgaaggctttgcacgagaactgagcaagttttgcgttggcaatttgtaccttagatttttgtgccttttttttcaactttactgatgtgagagggaaagagaatgacctttatctctgttaggtgtctttagtttttgcttttacattcttctatgattggcaatcaagtgtagcctaccttgaatcatatatgtgaagatttacatctagtccccagagaaggaatagggatctatgtatcgatgaccttattgttttttgatcgattgtgtggaaatggaagattaaaaatctctcaattaccctccaaacaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="+" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="124830" stop="125754"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125128" g_stop="125460" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="332" polyA_stop="350"/>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="+" ref_id="SGN-E238812" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>333</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E238812" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125128" e_stop="125460"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAGTAGACTACATCTGATGAAGGCTTTGCACGAGAACTGAGCAAGTTTTGCGTTGGCAATTTGTACCTTAGATTTTTGTGCCTTTTTTTTCAACTTTACTGATGTGAGAGGGAAAGAGAATGACCTTTATCTCTGTTAGGTGTCTTTAGTTTTTGCTTTTACATTCTTCTATGATTGGCAATCAAGTGTAGCCTACCTTGAATCATATATGTGAAGATTTACATCTAGTCCACAGAGAAGGAATAGGGATCTATGTATCGATGACCTTATTGTTTTTTGATCGATTGTGTGGAAATGGAAGATTAAAAATCTCTCAATTACCCTCATTAAT</genome_strand>
        <mrna_strand>GGCACGAG-CTACATCTGATGAAGGCTTTGCACGAGAACTGAGCAAGTTTTGCGTTGGCAATTTGTACCTTAGATTTTTGTGCCTTTTTTTTCAACTTTACTGATGTGAGAGGGAAAGAGAATGACCTTTATCTCTGTTAGGTGTCTTTAGTTTTTGCTTTTACATTCTTCTATGATTGGCAATCAAGTGTAGCCTACCTTGAATCATATATGTGAAGATTTACATCTAGTCCCCAGAGAAGGAATAGGGATCTATGTATCGATGACCTTATTGTTTTTTGATCGATTGTGTGGAAATGGAAGATTAAAAATCTCTCAATTACCCTC-CAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E600064" ref_strand="+" ref_description="SGN-E600064 [53066]">
      <seq>ctctcatatatttcatcaaatgacagagaagtacaaaactctctctatcactatctagtccaaaaacatcaaattaggaggttaacataacaacaataggatgatagaaagccaaagagaaagggaaattcatcaagtttgtgacatgttttagtatgctgccattctttgaggaacaggtgttttgatgacctgcaagatttgaaccacttcagccattgaaggcctacttgatggtatttgagaagtgcacaccaatgccaacttcaaaacaggcaaaacttcctcttcaggataagtattcatagttggatcaacacattccaacacattgccttgctcaagcaaaactctcacatgatcattgagtatcaacacattgtcctctccatactcaactggccttctacctgtgacaatttcaagaatcaacattccaaaaccatacacgtcgcacttttcgttcacccttaagctctggcatgccaattcaggtgctacatagcctagtgcactctggaacctgttgcttatcatgtgcttatcgagttttgtcactagccttgccagcccgaaatctgatattctcggattgaagttttcatcaaggaggatgttgctaggctttatgttgtagtgtatgattgctggcctaaacgcgtggtgcaaatgtgctaatcccttggctgttccgagaacaatgttgaatcgagtggaccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="+" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="125837" stop="127064"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126137" g_stop="126859" g_length="723"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="721" r_length="721" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="+" ref_id="SGN-E600064" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E600064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126137" e_stop="126859"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCATATATTTCATCAAATGACAGAGAAGTACAAAACTCTCTCTATCACTATCTAGTCCAAAAACATCAGATTAGGAGGTTAAGATAACAACAATAGGATATGATAGAAAGTCAAAGAGAAAGGGAAATTCATCAAGTTTGTAACAAGTTTTAGTATACTTCCATTCTTTGAGGAACAGGTGTTTTGATGACCTGCAAGATTTGAACCACTTCAGCCATTGAAGGCCTACTTGATGGTATTTGAGAAGTGCACACCAATGCCAACTTCAGAACAGGCAAAACTTCCTCTTCAGGATAAGTATTCATAGTTGGATCAACACACTCCAACACATTGCCTTGCTCAAGCAAAACTCTCACATGATCATTGAGTATCAACACATTGTCCTCTCCATACTCAACTGGCCTTCTCCCAGTGACAATTTCAAGAATCAACATCCCAAAACCATAAACGTCACACTTCTCATTCACCCTTAAGCTCTGGCATGCCAATTCAGGGGCTACATAGCCTAGTGCACTCTGGAACCTGCTGCTTATCATGTGCTTATCGAGCTTTGTCACTAGCCTTGCCAGCCCGAAATCAGATATTCTCGGGTTGAAGTTCTCATCAAGGAGAATGTTGCTAGGCTTTATGTTGTAGTGTATGATTGCTGGCCTAAACGCGTGGTGCAAATGTGCTAGTCCCTTGGCTGTTCCAAGCACAATGTTGAATCGAGTGGACCAA</genome_strand>
        <mrna_strand>CTCTCATATATTTCATCAAATGACAGAGAAGTACAAAACTCTCTCTATCACTATCTAGTCCAAAAACATCAAATTAGGAGGTTAACATAACAACAATAGG--ATGATAGAAAGCCAAAGAGAAAGGGAAATTCATCAAGTTTGTGACATGTTTTAGTATGCTGCCATTCTTTGAGGAACAGGTGTTTTGATGACCTGCAAGATTTGAACCACTTCAGCCATTGAAGGCCTACTTGATGGTATTTGAGAAGTGCACACCAATGCCAACTTCAAAACAGGCAAAACTTCCTCTTCAGGATAAGTATTCATAGTTGGATCAACACATTCCAACACATTGCCTTGCTCAAGCAAAACTCTCACATGATCATTGAGTATCAACACATTGTCCTCTCCATACTCAACTGGCCTTCTACCTGTGACAATTTCAAGAATCAACATTCCAAAACCATACACGTCGCACTTTTCGTTCACCCTTAAGCTCTGGCATGCCAATTCAGGTGCTACATAGCCTAGTGCACTCTGGAACCTGTTGCTTATCATGTGCTTATCGAGTTTTGTCACTAGCCTTGCCAGCCCGAAATCTGATATTCTCGGATTGAAGTTTTCATCAAGGAGGATGTTGCTAGGCTTTATGTTGTAGTGTATGATTGCTGGCCTAAACGCGTGGTGCAAATGTGCTAATCCCTTGGCTGTTCCGAGAACAATGTTGAATCGAGTGGACCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E347721" ref_strand="+" ref_description="SGN-E347721 [cTOF-26-M21]">
      <seq>gatactcaatgatcatgtgagagttttgcttgagcaaggcaatgtgttggagtgtgttgatccaactatgaatacttatcctgaagaggaagttttgcctgttctgaagttggcattggtgtgcacttctcaaataccatcaagtaggccttcaatggctgaagtggttcaaatcttgcaggtcatcaaaacacctgttcctcaaagaatggaagtatactaaaacttgttacaaacttgatgaatttccctttctctttgactttctatcatatcctattgttgttatcttaacctcctaatctgatgtttttggactagatagtgatagagagagttttgtacttctctgtcatttgatgaaatatatgagaggttggttcannnaanaaaaaaanaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="-" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="126811" stop="125828"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126511" g_stop="126137" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="375" r_length="375" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="-" ref_id="SGN-E347721" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347721" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126511" e_stop="126137"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATACTCAATGATCATGTGAGAGTTTTGCTTGAGCAAGGCAATGTGTTGGAGTGTGTTGATCCAACTATGAATACTTATCCTGAAGAGGAAGTTTTGCCTGTTCTGAAGTTGGCATTGGTGTGCACTTCTCAAATACCATCAAGTAGGCCTTCAATGGCTGAAGTGGTTCAAATCTTGCAGGTCATCAAAACACCTGTTCCTCAAAGAATGGAAGTATACTAAAACTTGTTACAAACTTGATGAATTTCCCTTTCTCTTTGACTTTCTATCATATCCTATTGTTGTTATCTTAACCTCCTAATCTGATGTTTTTGGACTAGATAGTGATAGAGAGAGTTTTGTACTTCTCTGTCATTTGATGAAATATATGAGAG</genome_strand>
        <mrna_strand>GATACTCAATGATCATGTGAGAGTTTTGCTTGAGCAAGGCAATGTGTTGGAGTGTGTTGATCCAACTATGAATACTTATCCTGAAGAGGAAGTTTTGCCTGTTCTGAAGTTGGCATTGGTGTGCACTTCTCAAATACCATCAAGTAGGCCTTCAATGGCTGAAGTGGTTCAAATCTTGCAGGTCATCAAAACACCTGTTCCTCAAAGAATGGAAGTATACTAAAACTTGTTACAAACTTGATGAATTTCCCTTTCTCTTTGACTTTCTATCATATCCTATTGTTGTTATCTTAACCTCCTAATCTGATGTTTTTGGACTAGATAGTGATAGAGAGAGTTTTGTACTTCTCTGTCATTTGATGAAATATATGAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>115</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="113" PGL_stop="460"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="113" e_stop="460"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.943"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.943">
            <gDNA_exon_boundary e_start="113" e_stop="460" e_length="348"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113" stop="460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466732" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGATGGGTAAAGTTAATAAAGAGAGGTTGGCTGAGTACCTTGGCGAACTGCAGAGAAAGGAGAACACAAATGACAGATATGTTGCAGCTCTAAAGGGCGAAACGTTGACAAGGAAACCTTACCAAAGAATTCAACCAGTCCCAAATCCAAGTGATATTGAAGCAAAGAAGGAACAGAAGTAGATCGTGGCTTAACCGGTTTTGTTGATTTAGTTTGGTACTTCTACTTTTTCCAATGGATAAAGCTTTGGAATGGAATCATGGACACAACTGGAGTTATTGCTATATATCTTTGAAACTTGTACAAGTAAAATTTGAAGAACGACTGTTGTCGAATGAGTGAAATCT</gDNA_template>
            <first_frame> M  M  G  K  V  N  K  E  R  L  A  E  Y  L  G  E  L  Q  R  K  E  N  T  N  D  R  Y  V  A  A  L  K  G  E  T  L  T  R  K  P  Y  Q  R  I  Q  P  V  P  N  P  S  D  I  E  A  K  K  E  Q  K  *  I  V  A  *  P  V  L  L  I  *  F  G  T  S  T  F  S  N  G  *  S  F  G  M  E  S  W  T  Q  L  E  L  L  L  Y  I  F  E  T  C  T  S  K  I  *  R  T  T  V  V  E  *  V  K  S </first_frame>
            <second_frame>  *  W  V  K  L  I  K  R  G  W  L  S  T  L  A  N  C  R  E  R  R  T  Q  M  T  D  M  L  Q  L  *  R  A  K  R  *  Q  G  N  L  T  K  E  F  N  Q  S  Q  I  Q  V  I  L  K  Q  R  R  N  R  S  R  S  W  L  N  R  F  C  *  F  S  L  V  L  L  L  F  P  M  D  K  A  L  E  W  N  H  G  H  N  W  S  Y  C  Y  I  S  L  K  L  V  Q  V  K  F  E  E  R  L  L  S  N  E  *  N   </second_frame>
            <third_frame>   D  G  *  S  *  *  R  E  V  G  *  V  P  W  R  T  A  E  K  G  E  H  K  *  Q  I  C  C  S  S  K  G  R  N  V  D  K  E  T  L  P  K  N  S  T  S  P  K  S  K  *  Y  *  S  K  E  G  T  E  V  D  R  G  L  T  G  F  V  D  L  V  W  Y  F  Y  F  F  Q  W  I  K  L  W  N  G  I  M  D  T  T  G  V  I  A  I  Y  L  *  N  L  Y  K  *  N  L  K  N  D  C  C  R  M  S  E  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0059I05.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="3705" PGL_stop="684"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3705" e_stop="3294"/>
            <exon e_start="1923" e_stop="684"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.986" acc_prob="0.956" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="3705" e_stop="3294" e_length="412"/>
          </exon>
          <intron i_serial="1" don_prob="0.986" acc_prob="0.956">
            <gDNA_intron_boundary i_start="3293" i_stop="1924" i_length="1370"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="1923" e_stop="684" e_length="1240"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3705" stop="3294"/>
              <exon start="1923" stop="1904"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3696" stop="3294"/>
              <exon start="1923" stop="1574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724234" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3695" stop="3294"/>
              <exon start="1923" stop="779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745841" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3678" stop="3294"/>
              <exon start="1923" stop="1715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275986" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3678" stop="3294"/>
              <exon start="1923" stop="1718"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276087" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3678" stop="3381"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228220" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3676" stop="3294"/>
              <exon start="1923" stop="1450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690897" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3670" stop="3294"/>
              <exon start="1923" stop="1829"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285333" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3666" stop="3294"/>
              <exon start="1923" stop="1759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578689" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3665" stop="3294"/>
              <exon start="1923" stop="1577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585437" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3665" stop="3294"/>
              <exon start="1923" stop="1598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585436" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3649" stop="3294"/>
              <exon start="1923" stop="1493"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585449" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3649" stop="3294"/>
              <exon start="1923" stop="1552"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585438" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3649" stop="3362"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699233" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3619" stop="3294"/>
              <exon start="1923" stop="1609"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454667" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3618" stop="3294"/>
              <exon start="1923" stop="733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746750" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3481" stop="3294"/>
              <exon start="1923" stop="1485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479247" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3368" stop="3294"/>
              <exon start="1923" stop="1655"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485509" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1704" stop="1003"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341713" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1685" stop="1166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329560" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1674" stop="995"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E614712" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1628" stop="723"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705305" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1548" stop="1000"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E579961" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1490" stop="725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713755" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1477" stop="735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694737" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1399" stop="684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711778" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1386" stop="945"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236344" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1365" stop="721"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371712" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1332" stop="718"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567357" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1332" stop="808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567419" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1273" stop="777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288843" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1248" stop="705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273465" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1193" stop="786"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221447" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1193" stop="786"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222019" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1136" stop="733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223125" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1136" stop="733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222748" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1124" stop="745"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E598335" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1124" stop="967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E598336" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1007" stop="699"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E580406" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCAATCAACAATCCCAAAAAATTCTCTAAACTAAAAAGATCAATTTTTTTTCTTGAAAAATTTCAATGGCGAAAAAAGCAGTATTAATTGGAATCAATTATCCAGGAACAAAAGCAGAACTTAGAGGTTGTATTAACGATGTTAAGCGAATGTACAATTGTTTACTTAATCGTTACGGATTTGCTGAGGAAGACATTACTGTTCTTATAGATACTGATGATTCTTACACACAACCAACTGGTCGGAATATACGTAAAGCTTTATCGGATCTTGTTGGATCTGCTGAATCAGGGGATTGTTTGTTTGTGCATTACAGTGGACATGGAACTAGGTTACCTGCTGAAACGGGTGAAGAAGATGATACTGGTTTTGATGAGTGTATTGTTCCTTGTGATATGAATCTTATTACAG : ATGATGATTTTAGAGAGCTCGTTGACAAAGTTCCTGAAGGTTGCCAGATCACAATTGTATCTGACTCATGCCACAGTGGTGGCCTCATTGACAAAGCTAAAGAGCAGATAGGGGAGAGCCACAAGCAAGGTGATGACGATGAAGGCCATGGATCTGGTTTTGGATTCAAGAATTTCTTACGTCGAAATGTTGAAGATGCATTTGAATCCCGGGGTATCCACCTTCCAGGTCGCCACCATCGCCGTGAGGAAGAAGAGGAGAATTTTGCTGAGAGTAGTGTGATTGAGACGGAAGACGGTGATCAAGTTCATGTGAAGAGCAAGTCCTTGCCTCTTTCCACTCTCATCGAGATACTTAAGCAGAAAACTGGTAAGGATGATATTGATGTTGGGAAACTTAGGCCAACACTCTTTGACGTCTTTGGCGAAGATGCAAGTCCTAAGGTGAAGAAATTCATGAAAATCATTTTTAACAAGCTACAAAAGAATAACGAGCAGGGTGGAGGCGGCGGGTTCATGGGTATGGTTGGTAACTTGGCTCAAGAGTTTCTGAAACAGAAACTTGATGAAAATGATGAGAGCTATGCAAAACCGGCCATGGAAACACACGTTGAAGGTAAACAGGAGGTTTATGCCGGTTCAGGTAATAGAGGTCTTCCAGACAGTGGCATTCTCGTCAGTGGGTGCCAAACAGACCAAACATCTGCGGATGCAACCCCTGCAGGCGGAGAGTCTTATGGTGCTCTAAGCAACGCAATTCAGGAAATCCTGGCCGAATCAGATGGTCCAGTCACCAATGAGGAGCTTGTTAGCAAGGCTAGGAAAAAGATGCAGAAACAAGGCTTCACACAACGCCCAGGCCTCTACTGCGATGATCATCACGTTGATGCTCCTTTTGTTTGTTGATTCTACTGTGCTATGCCTTCTCGAGTAGCTGTTGAAATACGACTGTGAAGTCAACGAGGTGTTATATAGCTACATCCTTTTGTGTATTTGTGTGATTGTTTGTGCTAATGTTGGAGTAGCTCTTTTACTCTGGTGTTTCAGTAGAACCATGCTCCATCATGTGAATGTGTACTATTTGGCTCTTTTTTTTTTCTTTTAAATTTGGTCAGAGAATAAGGTATTAAAGAACCACAGTTTTCGGTATTGTTTAGGATATTTGAAAGTTAAATCTGGAGAACTTGTTTGTATACTGAATGAGTTATATTTTAATGCAACTGAATGTATCATGTGCCAAC</gDNA_template>
            <first_frame> F  N  Q  Q  S  Q  K  I  L  *  T  K  K  I  N  F  F  S  *  K  I  S  M  A  K  K  A  V  L  I  G  I  N  Y  P  G  T  K  A  E  L  R  G  C  I  N  D  V  K  R  M  Y  N  C  L  L  N  R  Y  G  F  A  E  E  D  I  T  V  L  I  D  T  D  D  S  Y  T  Q  P  T  G  R  N  I  R  K  A  L  S  D  L  V  G  S  A  E  S  G  D  C  L  F  V  H  Y  S  G  H  G  T  R  L  P  A  E  T  G  E  E  D  D  T  G  F  D  E  C  I  V  P  C  D  M  N  L  I  T   : D  D  D  F  R  E  L  V  D  K  V  P  E  G  C  Q  I  T  I  V  S  D  S  C  H  S  G  G  L  I  D  K  A  K  E  Q  I  G  E  S  H  K  Q  G  D  D  D  E  G  H  G  S  G  F  G  F  K  N  F  L  R  R  N  V  E  D  A  F  E  S  R  G  I  H  L  P  G  R  H  H  R  R  E  E  E  E  E  N  F  A  E  S  S  V  I  E  T  E  D  G  D  Q  V  H  V  K  S  K  S  L  P  L  S  T  L  I  E  I  L  K  Q  K  T  G  K  D  D  I  D  V  G  K  L  R  P  T  L  F  D  V  F  G  E  D  A  S  P  K  V  K  K  F  M  K  I  I  F  N  K  L  Q  K  N  N  E  Q  G  G  G  G  G  F  M  G  M  V  G  N  L  A  Q  E  F  L  K  Q  K  L  D  E  N  D  E  S  Y  A  K  P  A  M  E  T  H  V  E  G  K  Q  E  V  Y  A  G  S  G  N  R  G  L  P  D  S  G  I  L  V  S  G  C  Q  T  D  Q  T  S  A  D  A  T  P  A  G  G  E  S  Y  G  A  L  S  N  A  I  Q  E  I  L  A  E  S  D  G  P  V  T  N  E  E  L  V  S  K  A  R  K  K  M  Q  K  Q  G  F  T  Q  R  P  G  L  Y  C  D  D  H  H  V  D  A  P  F  V  C  *  F  Y  C  A  M  P  S  R  V  A  V  E  I  R  L  *  S  Q  R  G  V  I  *  L  H  P  F  V  Y  L  C  D  C  L  C  *  C  W  S  S  S  F  T  L  V  F  Q  *  N  H  A  P  S  C  E  C  V  L  F  G  S  F  F  F  L  L  N  L  V  R  E  *  G  I  K  E  P  Q  F  S  V  L  F  R  I  F  E  S  *  I  W  R  T  C  L  Y  T  E  *  V  I  F  *  C  N  *  M  Y  H  V  P   </first_frame>
            <second_frame>  S  I  N  N  P  K  K  F  S  K  L  K  R  S  I  F  F  L  E  K  F  Q  W  R  K  K  Q  Y  *  L  E  S  I  I  Q  E  Q  K  Q  N  L  E  V  V  L  T  M  L  S  E  C  T  I  V  Y  L  I  V  T  D  L  L  R  K  T  L  L  F  L  *  I  L  M  I  L  T  H  N  Q  L  V  G  I  Y  V  K  L  Y  R  I  L  L  D  L  L  N  Q  G  I  V  C  L  C  I  T  V  D  M  E  L  G  Y  L  L  K  R  V  K  K  M  I  L  V  L  M  S  V  L  F  L  V  I  *  I  L  L  Q  :  M  M  I  L  E  S  S  L  T  K  F  L  K  V  A  R  S  Q  L  Y  L  T  H  A  T  V  V  A  S  L  T  K  L  K  S  R  *  G  R  A  T  S  K  V  M  T  M  K  A  M  D  L  V  L  D  S  R  I  S  Y  V  E  M  L  K  M  H  L  N  P  G  V  S  T  F  Q  V  A  T  I  A  V  R  K  K  R  R  I  L  L  R  V  V  *  L  R  R  K  T  V  I  K  F  M  *  R  A  S  P  C  L  F  P  L  S  S  R  Y  L  S  R  K  L  V  R  M  I  L  M  L  G  N  L  G  Q  H  S  L  T  S  L  A  K  M  Q  V  L  R  *  R  N  S  *  K  S  F  L  T  S  Y  K  R  I  T  S  R  V  E  A  A  G  S  W  V  W  L  V  T  W  L  K  S  F  *  N  R  N  L  M  K  M  M  R  A  M  Q  N  R  P  W  K  H  T  L  K  V  N  R  R  F  M  P  V  Q  V  I  E  V  F  Q  T  V  A  F  S  S  V  G  A  K  Q  T  K  H  L  R  M  Q  P  L  Q  A  E  S  L  M  V  L  *  A  T  Q  F  R  K  S  W  P  N  Q  M  V  Q  S  P  M  R  S  L  L  A  R  L  G  K  R  C  R  N  K  A  S  H  N  A  Q  A  S  T  A  M  I  I  T  L  M  L  L  L  F  V  D  S  T  V  L  C  L  L  E  *  L  L  K  Y  D  C  E  V  N  E  V  L  Y  S  Y  I  L  L  C  I  C  V  I  V  C  A  N  V  G  V  A  L  L  L  W  C  F  S  R  T  M  L  H  H  V  N  V  Y  Y  L  A  L  F  F  F  F  *  I  W  S  E  N  K  V  L  K  N  H  S  F  R  Y  C  L  G  Y  L  K  V  K  S  G  E  L  V  C  I  L  N  E  L  Y  F  N  A  T  E  C  I  M  C  Q  </second_frame>
            <third_frame>   Q  S  T  I  P  K  N  S  L  N  *  K  D  Q  F  F  F  L  K  N  F  N  G  E  K  S  S  I  N  W  N  Q  L  S  R  N  K  S  R  T  *  R  L  Y  *  R  C  *  A  N  V  Q  L  F  T  *  S  L  R  I  C  *  G  R  H  Y  C  S  Y  R  Y  *  *  F  L  H  T  T  N  W  S  E  Y  T  *  S  F  I  G  S  C  W  I  C  *  I  R  G  L  F  V  C  A  L  Q  W  T  W  N  *  V  T  C  *  N  G  *  R  R  *  Y  W  F  *  *  V  Y  C  S  L  *  Y  E  S  Y  Y  R :   *  *  F  *  R  A  R  *  Q  S  S  *  R  L  P  D  H  N  C  I  *  L  M  P  Q  W  W  P  H  *  Q  S  *  R  A  D  R  G  E  P  Q  A  R  *  *  R  *  R  P  W  I  W  F  W  I  Q  E  F  L  T  S  K  C  *  R  C  I  *  I  P  G  Y  P  P  S  R  S  P  P  S  P  *  G  R  R  G  E  F  C  *  E  *  C  D  *  D  G  R  R  *  S  S  S  C  E  E  Q  V  L  A  S  F  H  S  H  R  D  T  *  A  E  N  W  *  G  *  Y  *  C  W  E  T  *  A  N  T  L  *  R  L  W  R  R  C  K  S  *  G  E  E  I  H  E  N  H  F  *  Q  A  T  K  E  *  R  A  G  W  R  R  R  V  H  G  Y  G  W  *  L  G  S  R  V  S  E  T  E  T  *  *  K  *  *  E  L  C  K  T  G  H  G  N  T  R  *  R  *  T  G  G  L  C  R  F  R  *  *  R  S  S  R  Q  W  H  S  R  Q  W  V  P  N  R  P  N  I  C  G  C  N  P  C  R  R  R  V  L  W  C  S  K  Q  R  N  S  G  N  P  G  R  I  R  W  S  S  H  Q  *  G  A  C  *  Q  G  *  E  K  D  A  E  T  R  L  H  T  T  P  R  P  L  L  R  *  S  S  R  *  C  S  F  C  L  L  I  L  L  C  Y  A  F  S  S  S  C  *  N  T  T  V  K  S  T  R  C  Y  I  A  T  S  F  C  V  F  V  *  L  F  V  L  M  L  E  *  L  F  Y  S  G  V  S  V  E  P  C  S  I  M  *  M  C  T  I  W  L  F  F  F  S  F  K  F  G  Q  R  I  R  Y  *  R  T  T  V  F  G  I  V  *  D  I  *  K  L  N  L  E  N  L  F  V  Y  *  M  S  Y  I  L  M  Q  L  N  V  S  C  A  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0059I05.3" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3648" stop="3294"/>
                    <exon start="1923" stop="1019"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1257</number_coding_nucleotides>
                  <number_encoded_amino_acids>419</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KISMAKKAVLIGINYPGTKAELRGCINDVKRMYNCLLNRYGFAEEDITVLIDTDDSYTQPTGRNIRKALSDLVGSAESGDCLFVHYSGHGTRLPAETGEEDDTGFDECIVPCDMNLITDDDFRELVDKVPEGCQITIVSDSCHSGGLIDKAKEQIGESHKQGDDDEGHGSGFGFKNFLRRNVEDAFESRGIHLPGRHHRREEEEENFAESSVIETEDGDQVHVKSKSLPLSTLIEILKQKTGKDDIDVGKLRPTLFDVFGEDASPKVKKFMKIIFNKLQKNNEQGGGGGFMGMVGNLAQEFLKQKLDENDESYAKPAMETHVEGKQEVYAGSGNRGLPDSGILVSGCQTDQTSADATPAGGESYGALSNAIQEILAESDGPVTNEELVSKARKKMQKQGFTQRPGLYCDDHHVDAPFVC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="699" PGL_stop="1327"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="699" e_stop="1327"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.930"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.930">
            <gDNA_exon_boundary e_start="699" e_stop="1327" e_length="629"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="699" stop="1327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E568100" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTCAGTTGCATTAAAATATAACTCATTCAGTATACAAACAAGTTCTCCAGATTTAACTTTCAAATATCCTAAACAATACCGAAAACTGTGGTTCTTTAATACCTTATTCTCTGACCAAATTTAAAAGAAAAAAAAAAGAGCCAAATAGTACACATTCACATGATGGAGCATGGTTCTACTGAAACACCAGAGTAAAAGAGCTACTCCAACATTAGCACAAACAATCACACAAATACACAAAAGGATGTAGCTATATAACACCTCGTTGACTTCACAGTCGTATTTCAACAGCTACTCGAGAAGGCATAGCACAGTAGAATCAACAAACAAAAGGAGCATCAACGTGATGATCATCGCAGTAGAGGCCTGGGCGTTGTGTGAAGCCTTGTTTCTGCATCTTTTTCCTAGCCTTGCTAACAAGCTCCTCATTGGTGACTGGACCATCTGATTCGGCCAGGATTTCCTGAATTGCGTTGCTTAGAGCACCATAAGACTCTCCGCCTGCAGGGGTTGCATCCGCAGATGTTTGGTCTGTTTGGCACCCACTGACGAGAATGCCACTGTCTGGAAGACCTCTATTACCTGAACCGGCATAAACCTCCTGTTTACCTTCAACGTGTGTTTCCAT</gDNA_template>
            <first_frame> I  Q  L  H  *  N  I  T  H  S  V  Y  K  Q  V  L  Q  I  *  L  S  N  I  L  N  N  T  E  N  C  G  S  L  I  P  Y  S  L  T  K  F  K  R  K  K  K  E  P  N  S  T  H  S  H  D  G  A  W  F  Y  *  N  T  R  V  K  E  L  L  Q  H  *  H  K  Q  S  H  K  Y  T  K  G  C  S  Y  I  T  P  R  *  L  H  S  R  I  S  T  A  T  R  E  G  I  A  Q  *  N  Q  Q  T  K  G  A  S  T  *  *  S  S  Q  *  R  P  G  R  C  V  K  P  C  F  C  I  F  F  L  A  L  L  T  S  S  S  L  V  T  G  P  S  D  S  A  R  I  S  *  I  A  L  L  R  A  P  *  D  S  P  P  A  G  V  A  S  A  D  V  W  S  V  W  H  P  L  T  R  M  P  L  S  G  R  P  L  L  P  E  P  A  *  T  S  C  L  P  S  T  C  V  S   </first_frame>
            <second_frame>  F  S  C  I  K  I  *  L  I  Q  Y  T  N  K  F  S  R  F  N  F  Q  I  S  *  T  I  P  K  T  V  V  L  *  Y  L  I  L  *  P  N  L  K  E  K  K  K  S  Q  I  V  H  I  H  M  M  E  H  G  S  T  E  T  P  E  *  K  S  Y  S  N  I  S  T  N  N  H  T  N  T  Q  K  D  V  A  I  *  H  L  V  D  F  T  V  V  F  Q  Q  L  L  E  K  A  *  H  S  R  I  N  K  Q  K  E  H  Q  R  D  D  H  R  S  R  G  L  G  V  V  *  S  L  V  S  A  S  F  S  *  P  C  *  Q  A  P  H  W  *  L  D  H  L  I  R  P  G  F  P  E  L  R  C  L  E  H  H  K  T  L  R  L  Q  G  L  H  P  Q  M  F  G  L  F  G  T  H  *  R  E  C  H  C  L  E  D  L  Y  Y  L  N  R  H  K  P  P  V  Y  L  Q  R  V  F  P  </second_frame>
            <third_frame>   S  V  A  L  K  Y  N  S  F  S  I  Q  T  S  S  P  D  L  T  F  K  Y  P  K  Q  Y  R  K  L  W  F  F  N  T  L  F  S  D  Q  I  *  K  K  K  K  R  A  K  *  Y  T  F  T  *  W  S  M  V  L  L  K  H  Q  S  K  R  A  T  P  T  L  A  Q  T  I  T  Q  I  H  K  R  M  *  L  Y  N  T  S  L  T  S  Q  S  Y  F  N  S  Y  S  R  R  H  S  T  V  E  S  T  N  K  R  S  I  N  V  M  I  I  A  V  E  A  W  A  L  C  E  A  L  F  L  H  L  F  P  S  L  A  N  K  L  L  I  G  D  W  T  I  *  F  G  Q  D  F  L  N  C  V  A  *  S  T  I  R  L  S  A  C  R  G  C  I  R  R  C  L  V  C  L  A  P  T  D  E  N  A  T  V  W  K  T  S  I  T  *  T  G  I  N  L  L  F  T  F  N  V  C  F  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0059I05.3" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="950" stop="1147"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LYNTSLTSQSYFNSYSRRHSTVESTNKRSINVMIIAVEAWALCEALFLHLFPSLANKLLIGDWTI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="5465" PGL_stop="7551"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5465" e_stop="5598"/>
            <exon e_start="5793" e_stop="5842"/>
            <exon e_start="5933" e_stop="6000"/>
            <exon e_start="6185" e_stop="6247"/>
            <exon e_start="6453" e_stop="6556"/>
            <exon e_start="6866" e_stop="7551"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="5465" e_stop="5598" e_length="134"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="5599" i_stop="5792" i_length="194"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="5793" e_stop="5842" e_length="50"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="1.000">
            <gDNA_intron_boundary i_start="5843" i_stop="5932" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="5933" e_stop="6000" e_length="68"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="6001" i_stop="6184" i_length="184"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="6185" e_stop="6247" e_length="63"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="6248" i_stop="6452" i_length="205"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="6453" e_stop="6556" e_length="104"/>
          </exon>
          <intron i_serial="5" don_prob="0.985" acc_prob="0.999">
            <gDNA_intron_boundary i_start="6557" i_stop="6865" i_length="309"/>
          </intron>
          <exon e_serial="6" e_score="0.987">
            <gDNA_exon_boundary e_start="6866" e_stop="7551" e_length="686"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5465" stop="5598"/>
              <exon start="5793" stop="5842"/>
              <exon start="5933" stop="6000"/>
              <exon start="6185" stop="6247"/>
              <exon start="6453" stop="6469"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5479" stop="5598"/>
              <exon start="5793" stop="5842"/>
              <exon start="5933" stop="6000"/>
              <exon start="6185" stop="6247"/>
              <exon start="6453" stop="6556"/>
              <exon start="6866" stop="7550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747543" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7238" stop="7551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744760" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTGAAACAAACATTAAAAACATCAAAATGTCTATGTCCTCTATTTTTAGTAGACCAAGATTGGTTGTTAAGAAAGTTTTGGCTAGAGCTCAAAATGAAGGTGATGGTGCTATTGTTAGAAGAAGCATTGGAAG : GCCTGAATTGCAGAATCTTGATCCATTCCTCATGTTAGATGAGTTTAGTG : TTTCACAACCTGCTGGATTTCCTGACCATCCACACAGAGGTTTTGAGACTGTCACTTATATGTTGCAG : GGAGCTTTTACTCATCAAGATTTTGCTGGTCACAAGGGTACAATCAGGACTGGTGATGTGCAG : TGGATGACAGCAGGAAGAGGTATAGTTCATTCAGAAATGCCTGCTGGACCAGGTACTCAAAAGGGGTTGCAGCTTTGGATAAATTTATCTTCTAAGGACAAAAT : GATTGAGCCAAGGTATCAAGAATTGCTACACCAAGACATACCAAAGGCTGAAAAAGATGGTGTTTCGGTTACTATTTTAGCAGGGGAATCCATGGGGAAAAAATCACAAGTTTTCACGCGAACGCCTACAATGTACCTTGATTTCACCCTAAAACCAGGTTCTGAGCATCATCAACCGATCCCCGAGACCTGGAATGCCTTCCTCTACATAGTTGAAGGAGAGGGAGCGTTTGGTTCTTCGGATTCAACCACTACACCAGCTCACCATTGCTTGGTTTTAGGCCCTGGTGAAGGTCTAAGTGTGTGGAACAAATCTTCAAAGCCATTGAGGTTTGTTCTGATAGGAGGGCAACCGATTAACGAGCCTGTCGTGCAGTATGGTCCATTTGTTATGAACACTAAGAGTGAGATTATGCAGGCTTATCAAGATTATCAACTTGGAAAGAATGGATTTGAAAGATCAAGACAATGGTATTCTAAATGAGTAAACAGAGTTACATCTTATACTTCATGAACATTAAGTGCAATAGTCATTAGTTTTCTTAATGATTTCAAGTTGTGTTAGTCTTTGCTTTCATTTGAAATGTTATGTGTGTTGAGTGATGTTTATTAGTGTTCATTTCCTTCATTTGTTCAAGATTGTATTTATAGTAATTTATGTTAGAGTTCTTGAATTATATCTTAGC</gDNA_template>
            <first_frame> V  E  T  N  I  K  N  I  K  M  S  M  S  S  I  F  S  R  P  R  L  V  V  K  K  V  L  A  R  A  Q  N  E  G  D  G  A  I  V  R  R  S  I  G  R :   P  E  L  Q  N  L  D  P  F  L  M  L  D  E  F  S   : V  S  Q  P  A  G  F  P  D  H  P  H  R  G  F  E  T  V  T  Y  M  L  Q  :  G  A  F  T  H  Q  D  F  A  G  H  K  G  T  I  R  T  G  D  V  Q  :  W  M  T  A  G  R  G  I  V  H  S  E  M  P  A  G  P  G  T  Q  K  G  L  Q  L  W  I  N  L  S  S  K  D  K  M :   I  E  P  R  Y  Q  E  L  L  H  Q  D  I  P  K  A  E  K  D  G  V  S  V  T  I  L  A  G  E  S  M  G  K  K  S  Q  V  F  T  R  T  P  T  M  Y  L  D  F  T  L  K  P  G  S  E  H  H  Q  P  I  P  E  T  W  N  A  F  L  Y  I  V  E  G  E  G  A  F  G  S  S  D  S  T  T  T  P  A  H  H  C  L  V  L  G  P  G  E  G  L  S  V  W  N  K  S  S  K  P  L  R  F  V  L  I  G  G  Q  P  I  N  E  P  V  V  Q  Y  G  P  F  V  M  N  T  K  S  E  I  M  Q  A  Y  Q  D  Y  Q  L  G  K  N  G  F  E  R  S  R  Q  W  Y  S  K  *  V  N  R  V  T  S  Y  T  S  *  T  L  S  A  I  V  I  S  F  L  N  D  F  K  L  C  *  S  L  L  S  F  E  M  L  C  V  L  S  D  V  Y  *  C  S  F  P  S  F  V  Q  D  C  I  Y  S  N  L  C  *  S  S  *  I  I  S  *  </first_frame>
            <second_frame>  L  K  Q  T  L  K  T  S  K  C  L  C  P  L  F  L  V  D  Q  D  W  L  L  R  K  F  W  L  E  L  K  M  K  V  M  V  L  L  L  E  E  A  L  E   : G  L  N  C  R  I  L  I  H  S  S  C  *  M  S  L  V  :  F  H  N  L  L  D  F  L  T  I  H  T  E  V  L  R  L  S  L  I  C  C  R :   E  L  L  L  I  K  I  L  L  V  T  R  V  Q  S  G  L  V  M  C  S :   G  *  Q  Q  E  E  V  *  F  I  Q  K  C  L  L  D  Q  V  L  K  R  G  C  S  F  G  *  I  Y  L  L  R  T  K   : *  L  S  Q  G  I  K  N  C  Y  T  K  T  Y  Q  R  L  K  K  M  V  F  R  L  L  F  *  Q  G  N  P  W  G  K  N  H  K  F  S  R  E  R  L  Q  C  T  L  I  S  P  *  N  Q  V  L  S  I  I  N  R  S  P  R  P  G  M  P  S  S  T  *  L  K  E  R  E  R  L  V  L  R  I  Q  P  L  H  Q  L  T  I  A  W  F  *  A  L  V  K  V  *  V  C  G  T  N  L  Q  S  H  *  G  L  F  *  *  E  G  N  R  L  T  S  L  S  C  S  M  V  H  L  L  *  T  L  R  V  R  L  C  R  L  I  K  I  I  N  L  E  R  M  D  L  K  D  Q  D  N  G  I  L  N  E  *  T  E  L  H  L  I  L  H  E  H  *  V  Q  *  S  L  V  F  L  M  I  S  S  C  V  S  L  C  F  H  L  K  C  Y  V  C  *  V  M  F  I  S  V  H  F  L  H  L  F  K  I  V  F  I  V  I  Y  V  R  V  L  E  L  Y  L  S </second_frame>
            <third_frame>   *  N  K  H  *  K  H  Q  N  V  Y  V  L  Y  F  *  *  T  K  I  G  C  *  E  S  F  G  *  S  S  K  *  R  *  W  C  Y  C  *  K  K  H  W  K  :  A  *  I  A  E  S  *  S  I  P  H  V  R  *  V  *  C :   F  T  T  C  W  I  S  *  P  S  T  Q  R  F  *  D  C  H  L  Y  V  A   : G  S  F  Y  S  S  R  F  C  W  S  Q  G  Y  N  Q  D  W  *  C  A   : V  D  D  S  R  K  R  Y  S  S  F  R  N  A  C  W  T  R  Y  S  K  G  V  A  A  L  D  K  F  I  F  *  G  Q  N  :  D  *  A  K  V  S  R  I  A  T  P  R  H  T  K  G  *  K  R  W  C  F  G  Y  Y  F  S  R  G  I  H  G  E  K  I  T  S  F  H  A  N  A  Y  N  V  P  *  F  H  P  K  T  R  F  *  A  S  S  T  D  P  R  D  L  E  C  L  P  L  H  S  *  R  R  G  S  V  W  F  F  G  F  N  H  Y  T  S  S  P  L  L  G  F  R  P  W  *  R  S  K  C  V  E  Q  I  F  K  A  I  E  V  C  S  D  R  R  A  T  D  *  R  A  C  R  A  V  W  S  I  C  Y  E  H  *  E  *  D  Y  A  G  L  S  R  L  S  T  W  K  E  W  I  *  K  I  K  T  M  V  F  *  M  S  K  Q  S  Y  I  L  Y  F  M  N  I  K  C  N  S  H  *  F  S  *  *  F  Q  V  V  L  V  F  A  F  I  *  N  V  M  C  V  E  *  C  L  L  V  F  I  S  F  I  C  S  R  L  Y  L  *  *  F  M  L  E  F  L  N  Y  I  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0059I05.3" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5465" stop="5598"/>
                    <exon start="5793" stop="5842"/>
                    <exon start="5933" stop="6000"/>
                    <exon start="6185" stop="6247"/>
                    <exon start="6453" stop="6556"/>
                    <exon start="6866" stop="7349"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>900</number_coding_nucleotides>
                  <number_encoded_amino_acids>300</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VETNIKNIKMSMSSIFSRPRLVVKKVLARAQNEGDGAIVRRSIGRPELQNLDPFLMLDEFSVSQPAGFPDHPHRGFETVTYMLQGAFTHQDFAGHKGTIRTGDVQWMTAGRGIVHSEMPAGPGTQKGLQLWINLSSKDKMIEPRYQELLHQDIPKAEKDGVSVTILAGESMGKKSQVFTRTPTMYLDFTLKPGSEHHQPIPETWNAFLYIVEGEGAFGSSDSTTTPAHHCLVLGPGEGLSVWNKSSKPLRFVLIGGQPINEPVVQYGPFVMNTKSEIMQAYQDYQLGKNGFERSRQWYSK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="8716" PGL_stop="12235"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8716" e_stop="9135"/>
            <exon e_start="11735" e_stop="12235"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="8716" e_stop="9135" e_length="420"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.992">
            <gDNA_intron_boundary i_start="9136" i_stop="11734" i_length="2599"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="11735" e_stop="12235" e_length="501"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8716" stop="9009"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206630" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8717" stop="9135"/>
              <exon start="11735" stop="11953"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459584" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8717" stop="9135"/>
              <exon start="11735" stop="11899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E435922" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8720" stop="9135"/>
              <exon start="11735" stop="11813"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204292" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8720" stop="9057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375387" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8721" stop="9135"/>
              <exon start="11735" stop="11857"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8748" stop="8935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261008" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8752" stop="9135"/>
              <exon start="11735" stop="12022"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344534" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8761" stop="9135"/>
              <exon start="11735" stop="12020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348365" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8761" stop="9135"/>
              <exon start="11735" stop="11794"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311658" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8765" stop="9135"/>
              <exon start="11735" stop="12205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715395" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8949" stop="9135"/>
              <exon start="11735" stop="12228"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612350" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8974" stop="9135"/>
              <exon start="11735" stop="12235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E435923" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACCCCTTCCCCCCTCTCTCTCTCTCTAGATCACCAGTTTGCATTCTTTCTCTCTCTAAACCTCAAAAAGTTTCAATTTTTCAGCAAATGGACTCTTCAGATGATGAGGGTGAGGAGTATCTTTTCAAGATTGTAATCATTGGTGATTCTGCAGTAGGTAAATCTAATTTGCTTACACGTTATGCAAGAAATGAGTTTAATTTGCATTCAAAAGCAACTATTGGAGTTGAGTTTCAGACCCAAACTCTTGAAATTGATGGAAAAGAAGTTAAAGCTCAGATTTGGGATACTGCTGGACAAGAAAGGTTTAGAGCTGTGACTTCTGCTTATTATCGTGGTGCTTTTGGTGCTCTTGTTGTTTATGATATTTCAAGAAGGACAACTTTTGATAGTATCCCTCGTTGGCTTGATGAACTCAAAA : CTCATTCGGATACAACGGTTGCAAGGATACTGGTGGGAAACAAATGTGACTTGGAGAATATAAGAGCTGTGAGCGTAGAAGAAGGCAAAAGCCTGGCAGAATCAGAAGGGATGTTCTTCATGGAGACATCTGCCCTCGATTCAACAAACGTGAACAAGGCTTTCGAGATTGTGATTCGAGAGATCTATAATAGTGTTAGCAGAAAGGTTTTGAATTCCGATTCTTATAAAGCCGAATTATCTGTCAACAGAGTCAACCTGGTCAACGATGGTACCGATGGATCGAAACAAAAGCAGGGCTACTCTTGTTGTTCTAGGTGATTAATGTTATGTTTCTTGATTCCCCTTAAGTTTTACAAGAATGGTTCATTAAATTATTTTTGCTGGTCATACTGTTTATTGATTTGTTAATGGATAAAGTACTTTTGTAATGGTCAGGAACTTAATATTTATATTCTATATGGCAGCTGAAATGATAAATGTTTATTTTCCCCAATGCAAA</gDNA_template>
            <first_frame> T  P  S  P  L  S  L  S  L  D  H  Q  F  A  F  F  L  S  L  N  L  K  K  F  Q  F  F  S  K  W  T  L  Q  M  M  R  V  R  S  I  F  S  R  L  *  S  L  V  I  L  Q  *  V  N  L  I  C  L  H  V  M  Q  E  M  S  L  I  C  I  Q  K  Q  L  L  E  L  S  F  R  P  K  L  L  K  L  M  E  K  K  L  K  L  R  F  G  I  L  L  D  K  K  G  L  E  L  *  L  L  L  I  I  V  V  L  L  V  L  L  L  F  M  I  F  Q  E  G  Q  L  L  I  V  S  L  V  G  L  M  N  S  K  :  L  I  R  I  Q  R  L  Q  G  Y  W  W  E  T  N  V  T  W  R  I  *  E  L  *  A  *  K  K  A  K  A  W  Q  N  Q  K  G  C  S  S  W  R  H  L  P  S  I  Q  Q  T  *  T  R  L  S  R  L  *  F  E  R  S  I  I  V  L  A  E  R  F  *  I  P  I  L  I  K  P  N  Y  L  S  T  E  S  T  W  S  T  M  V  P  M  D  R  N  K  S  R  A  T  L  V  V  L  G  D  *  C  Y  V  S  *  F  P  L  S  F  T  R  M  V  H  *  I  I  F  A  G  H  T  V  Y  *  F  V  N  G  *  S  T  F  V  M  V  R  N  L  I  F  I  F  Y  M  A  A  E  M  I  N  V  Y  F  P  Q  C  K </first_frame>
            <second_frame>  P  L  P  P  S  L  S  L  *  I  T  S  L  H  S  F  S  L  *  T  S  K  S  F  N  F  S  A  N  G  L  F  R  *  *  G  *  G  V  S  F  Q  D  C  N  H  W  *  F  C  S  R  *  I  *  F  A  Y  T  L  C  K  K  *  V  *  F  A  F  K  S  N  Y  W  S  *  V  S  D  P  N  S  *  N  *  W  K  R  S  *  S  S  D  L  G  Y  C  W  T  R  K  V  *  S  C  D  F  C  L  L  S  W  C  F  W  C  S  C  C  L  *  Y  F  K  K  D  N  F  *  *  Y  P  S  L  A  *  *  T  Q  N :   S  F  G  Y  N  G  C  K  D  T  G  G  K  Q  M  *  L  G  E  Y  K  S  C  E  R  R  R  R  Q  K  P  G  R  I  R  R  D  V  L  H  G  D  I  C  P  R  F  N  K  R  E  Q  G  F  R  D  C  D  S  R  D  L  *  *  C  *  Q  K  G  F  E  F  R  F  L  *  S  R  I  I  C  Q  Q  S  Q  P  G  Q  R  W  Y  R  W  I  E  T  K  A  G  L  L  L  L  F  *  V  I  N  V  M  F  L  D  S  P  *  V  L  Q  E  W  F  I  K  L  F  L  L  V  I  L  F  I  D  L  L  M  D  K  V  L  L  *  W  S  G  T  *  Y  L  Y  S  I  W  Q  L  K  *  *  M  F  I  F  P  N  A   </second_frame>
            <third_frame>   P  F  P  P  L  S  L  S  R  S  P  V  C  I  L  S  L  S  K  P  Q  K  V  S  I  F  Q  Q  M  D  S  S  D  D  E  G  E  E  Y  L  F  K  I  V  I  I  G  D  S  A  V  G  K  S  N  L  L  T  R  Y  A  R  N  E  F  N  L  H  S  K  A  T  I  G  V  E  F  Q  T  Q  T  L  E  I  D  G  K  E  V  K  A  Q  I  W  D  T  A  G  Q  E  R  F  R  A  V  T  S  A  Y  Y  R  G  A  F  G  A  L  V  V  Y  D  I  S  R  R  T  T  F  D  S  I  P  R  W  L  D  E  L  K   : T  H  S  D  T  T  V  A  R  I  L  V  G  N  K  C  D  L  E  N  I  R  A  V  S  V  E  E  G  K  S  L  A  E  S  E  G  M  F  F  M  E  T  S  A  L  D  S  T  N  V  N  K  A  F  E  I  V  I  R  E  I  Y  N  S  V  S  R  K  V  L  N  S  D  S  Y  K  A  E  L  S  V  N  R  V  N  L  V  N  D  G  T  D  G  S  K  Q  K  Q  G  Y  S  C  C  S  R  *  L  M  L  C  F  L  I  P  L  K  F  Y  K  N  G  S  L  N  Y  F  C  W  S  Y  C  L  L  I  C  *  W  I  K  Y  F  C  N  G  Q  E  L  N  I  Y  I  L  Y  G  S  *  N  D  K  C  L  F  S  P  M  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0059I05.3" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8718" stop="9135"/>
                    <exon start="11735" stop="12054"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>735</number_coding_nucleotides>
                  <number_encoded_amino_acids>245</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PFPPLSLSRSPVCILSLSKPQKVSIFQQMDSSDDEGEEYLFKIVIIGDSAVGKSNLLTRYARNEFNLHSKATIGVEFQTQTLEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAFGALVVYDISRRTTFDSIPRWLDELKTHSDTTVARILVGNKCDLENIRAVSVEEGKSLAESEGMFFMETSALDSTNVNKAFEIVIREIYNSVSRKVLNSDSYKAELSVNRVNLVNDGTDGSKQKQGYSCCSR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="13308" PGL_stop="14039"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13308" e_stop="14039"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.947"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.947">
            <gDNA_exon_boundary e_start="13308" e_stop="14039" e_length="732"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13308" stop="13950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E571953" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13383" stop="14039"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E423686" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGCTATTAAATCCCACATTGAAAATAAGAATAAATAACAATAACCTAAACAATTTTCAAATGATAAATCAAGATAAACTTAGCCATTATTTCTTTACCAGGGATATATTTACGAAACGAAAAAAGAAACATAAAAAAGGTGCATTTTGAGGCTAATAGTCTATGTTGCTCGTACTCTCGTAAAATGTTGCCACACCAACGTCGAATCCTCCAAAAGAAATACACTACTTTTGAAGAATTCAACACACACCTGTCGGCAGTTTTTAAAGACTCCGACCAACATAACTTGTATTATTGTTTCAGTTCCATTTCTTCAGTGCCCTGATCTCCAGTATCTAGCATTCTCAAAACCATTCTTGCAATATTGATAATCTTCAAATGTTTGATCAATTTCATCTTGTGAGTTCATCACAAAAGGACCATGTTGAACCACAGGTTCATTAAGAGGTTGTCCACCTAAAAGAACAAATCTTAATGGCTTTGAAGACTTGTTCCATACACTAAGTCCCTCTCCAGGGCCTAAAACCAAGCAATGGTGAGCTGATACAGGACCTGAACTCGGAATTCCGAAGACACCTTCTCCTTCAACTATATATACGAAGGCGTTCCAAGATTCAGGGATGGCTTGATGATAGTAAGCTGTTGGTTGTAGGGTGAAATCGAGGTACATTGTAGGCGTTTGTGTGTAAACCGGGGATTGGACTCCCATTGCTTCACCTGCTATAACTTTTA</gDNA_template>
            <first_frame> M  L  L  N  P  T  L  K  I  R  I  N  N  N  N  L  N  N  F  Q  M  I  N  Q  D  K  L  S  H  Y  F  F  T  R  D  I  F  T  K  R  K  K  K  H  K  K  G  A  F  *  G  *  *  S  M  L  L  V  L  S  *  N  V  A  T  P  T  S  N  P  P  K  E  I  H  Y  F  *  R  I  Q  H  T  P  V  G  S  F  *  R  L  R  P  T  *  L  V  L  L  F  Q  F  H  F  F  S  A  L  I  S  S  I  *  H  S  Q  N  H  S  C  N  I  D  N  L  Q  M  F  D  Q  F  H  L  V  S  S  S  Q  K  D  H  V  E  P  Q  V  H  *  E  V  V  H  L  K  E  Q  I  L  M  A  L  K  T  C  S  I  H  *  V  P  L  Q  G  L  K  P  S  N  G  E  L  I  Q  D  L  N  S  E  F  R  R  H  L  L  L  Q  L  Y  I  R  R  R  S  K  I  Q  G  W  L  D  D  S  K  L  L  V  V  G  *  N  R  G  T  L  *  A  F  V  C  K  P  G  I  G  L  P  L  L  H  L  L  *  L  L </first_frame>
            <second_frame>  C  Y  *  I  P  H  *  K  *  E  *  I  T  I  T  *  T  I  F  K  *  *  I  K  I  N  L  A  I  I  S  L  P  G  I  Y  L  R  N  E  K  R  N  I  K  K  V  H  F  E  A  N  S  L  C  C  S  Y  S  R  K  M  L  P  H  Q  R  R  I  L  Q  K  K  Y  T  T  F  E  E  F  N  T  H  L  S  A  V  F  K  D  S  D  Q  H  N  L  Y  Y  C  F  S  S  I  S  S  V  P  *  S  P  V  S  S  I  L  K  T  I  L  A  I  L  I  I  F  K  C  L  I  N  F  I  L  *  V  H  H  K  R  T  M  L  N  H  R  F  I  K  R  L  S  T  *  K  N  K  S  *  W  L  *  R  L  V  P  Y  T  K  S  L  S  R  A  *  N  Q  A  M  V  S  *  Y  R  T  *  T  R  N  S  E  D  T  F  S  F  N  Y  I  Y  E  G  V  P  R  F  R  D  G  L  M  I  V  S  C  W  L  *  G  E  I  E  V  H  C  R  R  L  C  V  N  R  G  L  D  S  H  C  F  T  C  Y  N  F   </second_frame>
            <third_frame>   A  I  K  S  H  I  E  N  K  N  K  *  Q  *  P  K  Q  F  S  N  D  K  S  R  *  T  *  P  L  F  L  Y  Q  G  Y  I  Y  E  T  K  K  E  T  *  K  R  C  I  L  R  L  I  V  Y  V  A  R  T  L  V  K  C  C  H  T  N  V  E  S  S  K  R  N  T  L  L  L  K  N  S  T  H  T  C  R  Q  F  L  K  T  P  T  N  I  T  C  I  I  V  S  V  P  F  L  Q  C  P  D  L  Q  Y  L  A  F  S  K  P  F  L  Q  Y  *  *  S  S  N  V  *  S  I  S  S  C  E  F  I  T  K  G  P  C  *  T  T  G  S  L  R  G  C  P  P  K  R  T  N  L  N  G  F  E  D  L  F  H  T  L  S  P  S  P  G  P  K  T  K  Q  W  *  A  D  T  G  P  E  L  G  I  P  K  T  P  S  P  S  T  I  Y  T  K  A  F  Q  D  S  G  M  A  *  *  *  *  A  V  G  C  R  V  K  S  R  Y  I  V  G  V  C  V  *  T  G  D  W  T  P  I  A  S  P  A  I  T  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0059I05.3" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13375" stop="13632"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>255</number_coding_nucleotides>
                  <number_encoded_amino_acids>85</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IKINLAIISLPGIYLRNEKRNIKKVHFEANSLCCSYSRKMLPHQRRILQKKYTTFEEFNTHLSAVFKDSDQHNLYYCFSSISSVP*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0059I05.3" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13442" stop="13675"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KRCILRLIVYVARTLVKCCHTNVESSKRNTLLLKNSTHTCRQFLKTPTNITCIIVSVPFLQCPDLQYLAFSKPFLQY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="16376" PGL_stop="13679"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16376" e_stop="16153"/>
            <exon e_start="15748" e_stop="15699"/>
            <exon e_start="15464" e_stop="15397"/>
            <exon e_start="15000" e_stop="14938"/>
            <exon e_start="14745" e_stop="14642"/>
            <exon e_start="14107" e_stop="13679"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.843" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.947" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.982" e_score="1.000"/>
          <exon-only e_score="0.956"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="16376" e_stop="16153" e_length="224"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="16152" i_stop="15749" i_length="404"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15748" e_stop="15699" e_length="50"/>
          </exon>
          <intron i_serial="2" don_prob="0.843" acc_prob="0.989">
            <gDNA_intron_boundary i_start="15698" i_stop="15465" i_length="234"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="15464" e_stop="15397" e_length="68"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="0.947">
            <gDNA_intron_boundary i_start="15396" i_stop="15001" i_length="396"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="15000" e_stop="14938" e_length="63"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="14937" i_stop="14746" i_length="192"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="14745" e_stop="14642" e_length="104"/>
          </exon>
          <intron i_serial="5" don_prob="0.969" acc_prob="0.982">
            <gDNA_intron_boundary i_start="14641" i_stop="14108" i_length="534"/>
          </intron>
          <exon e_serial="6" e_score="0.956">
            <gDNA_exon_boundary e_start="14107" e_stop="13679" e_length="429"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16376" stop="16153"/>
              <exon start="15748" stop="15699"/>
              <exon start="15464" stop="15397"/>
              <exon start="15000" stop="14938"/>
              <exon start="14745" stop="14642"/>
              <exon start="14107" stop="13834"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213196" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15725" stop="15699"/>
              <exon start="15464" stop="15397"/>
              <exon start="15000" stop="14938"/>
              <exon start="14745" stop="14642"/>
              <exon start="14107" stop="13679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451029" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15725" stop="15699"/>
              <exon start="15464" stop="15397"/>
              <exon start="15000" stop="14938"/>
              <exon start="14745" stop="14642"/>
              <exon start="14107" stop="13780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E423685" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATATGAGAGCTATTTCTGAACTATTTTTAGTGAAAATCTTCCCATTTGTTAGAAATAAAAAAGTTTCAAGAAAGCCTATTTTTTTTCCTATTAGAAATATTAATATGTCTGAATCAAATCAATATGATTCTTGTTTTGATAGACCAAGATTGGTTATTAAGAAAGTTTTGGCTAAACCTCAAAGTGAAGGGAATGGAGCTGTTGTTAGAAGAAGCATTGGAAG : GCATGAATTGAGGAATCTTGATCCTTTCCTAATGTTGGATGAATTTTCAG : TTTCTGCTCCTGCTGGTTTTCCTGATCATCCACACAGAGGTTTTGAGACAGTAACTTACATGCTACAG : GGAGCTTTTACTCATCAAGATTTTGCTGGTCACAAGGGCACAATTAATACTGGTGATGTGCAG : TGGATGACAGCAGGAAGAGGTATAATTCATTCAGAAATGCCTGCAGGAGAAGGCAGTCAAAAGGGGTTGCAACTTTGGATAAATCTCTCTTCTAAGGACAAAAT : GATTGAGCCAAGGTATCAAGAACTGCTGAAAGAAGACATACCAAGAGCAGAGAATGATGGTGTTAAAGTAAAAGTTATAGCAGGTGAAGCAATGGGAGTCCAATCCCCGGTTTACACACAAACGCCTACAATGTACCTCGATTTCACCCTACAACCAACAGCTTACTATCATCAAGCCATCCCTGAATCTTGGAACGCCTTCGTATATATAGTTGAAGGAGAAGGTGTCTTCGGAATTCCGAGTTCAGGTCCTGTATCAGCTCACCATTGCTTGGTTTTAGGCCCTGGAGAGGGACTTAGTGTATGGAACAAGTCTTCAAAGCCATTAAGATTTGTTCTTTTAGGTGGACAACCTCTTAATGAACCTGTGGTTCAACATGGTCCTTTTGTGATGAACTCACAAGATGAAATTGATCAAACATTTGAAGA</gDNA_template>
            <first_frame> Y  M  R  A  I  S  E  L  F  L  V  K  I  F  P  F  V  R  N  K  K  V  S  R  K  P  I  F  F  P  I  R  N  I  N  M  S  E  S  N  Q  Y  D  S  C  F  D  R  P  R  L  V  I  K  K  V  L  A  K  P  Q  S  E  G  N  G  A  V  V  R  R  S  I  G  R :   H  E  L  R  N  L  D  P  F  L  M  L  D  E  F  S   : V  S  A  P  A  G  F  P  D  H  P  H  R  G  F  E  T  V  T  Y  M  L  Q  :  G  A  F  T  H  Q  D  F  A  G  H  K  G  T  I  N  T  G  D  V  Q  :  W  M  T  A  G  R  G  I  I  H  S  E  M  P  A  G  E  G  S  Q  K  G  L  Q  L  W  I  N  L  S  S  K  D  K  M :   I  E  P  R  Y  Q  E  L  L  K  E  D  I  P  R  A  E  N  D  G  V  K  V  K  V  I  A  G  E  A  M  G  V  Q  S  P  V  Y  T  Q  T  P  T  M  Y  L  D  F  T  L  Q  P  T  A  Y  Y  H  Q  A  I  P  E  S  W  N  A  F  V  Y  I  V  E  G  E  G  V  F  G  I  P  S  S  G  P  V  S  A  H  H  C  L  V  L  G  P  G  E  G  L  S  V  W  N  K  S  S  K  P  L  R  F  V  L  L  G  G  Q  P  L  N  E  P  V  V  Q  H  G  P  F  V  M  N  S  Q  D  E  I  D  Q  T  F  E   </first_frame>
            <second_frame>  I  *  E  L  F  L  N  Y  F  *  *  K  S  S  H  L  L  E  I  K  K  F  Q  E  S  L  F  F  F  L  L  E  I  L  I  C  L  N  Q  I  N  M  I  L  V  L  I  D  Q  D  W  L  L  R  K  F  W  L  N  L  K  V  K  G  M  E  L  L  L  E  E  A  L  E   : G  M  N  *  G  I  L  I  L  S  *  C  W  M  N  F  Q  :  F  L  L  L  L  V  F  L  I  I  H  T  E  V  L  R  Q  *  L  T  C  Y  R :   E  L  L  L  I  K  I  L  L  V  T  R  A  Q  L  I  L  V  M  C  S :   G  *  Q  Q  E  E  V  *  F  I  Q  K  C  L  Q  E  K  A  V  K  R  G  C  N  F  G  *  I  S  L  L  R  T  K   : *  L  S  Q  G  I  K  N  C  *  K  K  T  Y  Q  E  Q  R  M  M  V  L  K  *  K  L  *  Q  V  K  Q  W  E  S  N  P  R  F  T  H  K  R  L  Q  C  T  S  I  S  P  Y  N  Q  Q  L  T  I  I  K  P  S  L  N  L  G  T  P  S  Y  I  *  L  K  E  K  V  S  S  E  F  R  V  Q  V  L  Y  Q  L  T  I  A  W  F  *  A  L  E  R  D  L  V  Y  G  T  S  L  Q  S  H  *  D  L  F  F  *  V  D  N  L  L  M  N  L  W  F  N  M  V  L  L  *  *  T  H  K  M  K  L  I  K  H  L  K  </second_frame>
            <third_frame>   Y  E  S  Y  F  *  T  I  F  S  E  N  L  P  I  C  *  K  *  K  S  F  K  K  A  Y  F  F  S  Y  *  K  Y  *  Y  V  *  I  K  S  I  *  F  L  F  *  *  T  K  I  G  Y  *  E  S  F  G  *  T  S  K  *  R  E  W  S  C  C  *  K  K  H  W  K  :  A  *  I  E  E  S  *  S  F  P  N  V  G  *  I  F  S :   F  C  S  C  W  F  S  *  S  S  T  Q  R  F  *  D  S  N  L  H  A  T   : G  S  F  Y  S  S  R  F  C  W  S  Q  G  H  N  *  Y  W  *  C  A   : V  D  D  S  R  K  R  Y  N  S  F  R  N  A  C  R  R  R  Q  S  K  G  V  A  T  L  D  K  S  L  F  *  G  Q  N  :  D  *  A  K  V  S  R  T  A  E  R  R  H  T  K  S  R  E  *  W  C  *  S  K  S  Y  S  R  *  S  N  G  S  P  I  P  G  L  H  T  N  A  Y  N  V  P  R  F  H  P  T  T  N  S  L  L  S  S  S  H  P  *  I  L  E  R  L  R  I  Y  S  *  R  R  R  C  L  R  N  S  E  F  R  S  C  I  S  S  P  L  L  G  F  R  P  W  R  G  T  *  C  M  E  Q  V  F  K  A  I  K  I  C  S  F  R  W  T  T  S  *  *  T  C  G  S  T  W  S  F  C  D  E  L  T  R  *  N  *  S  N  I  *  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0059I05.3" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16376" stop="16153"/>
                    <exon start="15748" stop="15699"/>
                    <exon start="15464" stop="15397"/>
                    <exon start="15000" stop="14938"/>
                    <exon start="14745" stop="14642"/>
                    <exon start="14107" stop="13681"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>936</number_coding_nucleotides>
                  <number_encoded_amino_acids>312</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YMRAISELFLVKIFPFVRNKKVSRKPIFFPIRNINMSESNQYDSCFDRPRLVIKKVLAKPQSEGNGAVVRRSIGRHELRNLDPFLMLDEFSVSAPAGFPDHPHRGFETVTYMLQGAFTHQDFAGHKGTINTGDVQWMTAGRGIIHSEMPAGEGSQKGLQLWINLSSKDKMIEPRYQELLKEDIPRAENDGVKVKVIAGEAMGVQSPVYTQTPTMYLDFTLQPTAYYHQAIPESWNAFVYIVEGEGVFGIPSSGPVSAHHCLVLGPGEGLSVWNKSSKPLRFVLLGGQPLNEPVVQHGPFVMNSQDEIDQTFE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="23794" PGL_stop="27437"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23794" e_stop="24008"/>
            <exon e_start="25018" e_stop="25176"/>
            <exon e_start="26258" e_stop="26369"/>
            <exon e_start="26475" e_stop="26594"/>
            <exon e_start="27256" e_stop="27437"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.908" e_score="1.000"/>
          <exon-intron don_prob="0.693" acc_prob="0.704" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.951"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="23794" e_stop="24008" e_length="215"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.975">
            <gDNA_intron_boundary i_start="24009" i_stop="25017" i_length="1009"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="25018" e_stop="25176" e_length="159"/>
          </exon>
          <intron i_serial="2" don_prob="0.982" acc_prob="0.908">
            <gDNA_intron_boundary i_start="25177" i_stop="26257" i_length="1081"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="26258" e_stop="26369" e_length="112"/>
          </exon>
          <intron i_serial="3" don_prob="0.693" acc_prob="0.704">
            <gDNA_intron_boundary i_start="26370" i_stop="26474" i_length="105"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="26475" e_stop="26594" e_length="120"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.997">
            <gDNA_intron_boundary i_start="26595" i_stop="27255" i_length="661"/>
          </intron>
          <exon e_serial="5" e_score="0.951">
            <gDNA_exon_boundary e_start="27256" e_stop="27437" e_length="182"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23794" stop="24008"/>
              <exon start="25018" stop="25176"/>
              <exon start="26258" stop="26369"/>
              <exon start="26475" stop="26594"/>
              <exon start="27256" stop="27437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316028" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25077" stop="25176"/>
              <exon start="26258" stop="26369"/>
              <exon start="26475" stop="26594"/>
              <exon start="27256" stop="27388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361106" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGACAGGAAAAAAAATTTAATGCAGAAATAGGCGAAGAAAATTGGGGAAAATATTGAGGAAGATAAAGGGGGAATCGACATTGAATAACTAATTATGGCATTTTCATGGCGTTTTATTGGACTATCTATTCTTGTTTTTCTTCTAAATGTATCATCAATAGCACATTCTGCTCCTACCAATGCAGATAAGTCTTGCAGCAATGAAATCAATATG : ATGCTGGTGAAGTTGTGGGTTAATGGTGGTGAGGAAGATTCAATAGTTGGCTTGAGTGCAGCATTTGGGTCTGTATTACCCACTGATACTAAACGTGCCTCCAGGTTGCCTGCTGTTTATACACAACCTTTGAATGGCTGTTCTGCTTCCTCCACTAAG : TTATCAGGCTCTATTGCACTAGCTCGTCGCGGTGAATGTGAATTTATAACCAAGGCCACGGTCGCCCAAGCAGGAGGTGCAGGAGGTGTTGTGCTAATAAATAATGAAGGAG : GTACTCTGGATATTGCTTGTCCTAATAATTCTACCATATCAAATGTAACCATTCCTGTTGTTTCAATTTCAAAAGAGGGGGCAGATATTATTGATAAATACATCAATTCAGGAAAGAAAG : TGGAGCTGCTGTTATATTCGCCAGATCGCCCTATTGTGGACTACTCGGTGTCTTTCATATGGTTGATGGCTGTTGGAACAATCATTTGTGCAGCTCTTTGGAAAAAGTTTACTCAATCTAAGGAAAGTGACGACTATGAACTATCACAAGAGCCCCCTTCCTAATCTCAAATTTGACATGCT</gDNA_template>
            <first_frame> K  T  G  K  K  I  *  C  R  N  R  R  R  K  L  G  K  I  L  R  K  I  K  G  E  S  T  L  N  N  *  L  W  H  F  H  G  V  L  L  D  Y  L  F  L  F  F  F  *  M  Y  H  Q  *  H  I  L  L  L  P  M  Q  I  S  L  A  A  M  K  S  I  * :   C  W  *  S  C  G  L  M  V  V  R  K  I  Q  *  L  A  *  V  Q  H  L  G  L  Y  Y  P  L  I  L  N  V  P  P  G  C  L  L  F  I  H  N  L  *  M  A  V  L  L  P  P  L  S :   Y  Q  A  L  L  H  *  L  V  A  V  N  V  N  L  *  P  R  P  R  S  P  K  Q  E  V  Q  E  V  L  C  *  *  I  M  K  E  :  V  L  W  I  L  L  V  L  I  I  L  P  Y  Q  M  *  P  F  L  L  F  Q  F  Q  K  R  G  Q  I  L  L  I  N  T  S  I  Q  E  R  K  :  W  S  C  C  Y  I  R  Q  I  A  L  L  W  T  T  R  C  L  S  Y  G  *  W  L  L  E  Q  S  F  V  Q  L  F  G  K  S  L  L  N  L  R  K  V  T  T  M  N  Y  H  K  S  P  L  P  N  L  K  F  D  M   </first_frame>
            <second_frame>  R  Q  E  K  K  F  N  A  E  I  G  E  E  N  W  G  K  Y  *  G  R  *  R  G  N  R  H  *  I  T  N  Y  G  I  F  M  A  F  Y  W  T  I  Y  S  C  F  S  S  K  C  I  I  N  S  T  F  C  S  Y  Q  C  R  *  V  L  Q  Q  *  N  Q  Y   : D  A  G  E  V  V  G  *  W  W  *  G  R  F  N  S  W  L  E  C  S  I  W  V  C  I  T  H  *  Y  *  T  C  L  Q  V  A  C  C  L  Y  T  T  F  E  W  L  F  C  F  L  H  *   : V  I  R  L  Y  C  T  S  S  S  R  *  M  *  I  Y  N  Q  G  H  G  R  P  S  R  R  C  R  R  C  C  A  N  K  *  *  R  R :   Y  S  G  Y  C  L  S  *  *  F  Y  H  I  K  C  N  H  S  C  C  F  N  F  K  R  G  G  R  Y  Y  *  *  I  H  Q  F  R  K  E  S :   G  A  A  V  I  F  A  R  S  P  Y  C  G  L  L  G  V  F  H  M  V  D  G  C  W  N  N  H  L  C  S  S  L  E  K  V  Y  S  I  *  G  K  *  R  L  *  T  I  T  R  A  P  F  L  I  S  N  L  T  C  </second_frame>
            <third_frame>   D  R  K  K  N  L  M  Q  K  *  A  K  K  I  G  E  N  I  E  E  D  K  G  G  I  D  I  E  *  L  I  M  A  F  S  W  R  F  I  G  L  S  I  L  V  F  L  L  N  V  S  S  I  A  H  S  A  P  T  N  A  D  K  S  C  S  N  E  I  N  M  :  M  L  V  K  L  W  V  N  G  G  E  E  D  S  I  V  G  L  S  A  A  F  G  S  V  L  P  T  D  T  K  R  A  S  R  L  P  A  V  Y  T  Q  P  L  N  G  C  S  A  S  S  T  K  :  L  S  G  S  I  A  L  A  R  R  G  E  C  E  F  I  T  K  A  T  V  A  Q  A  G  G  A  G  G  V  V  L  I  N  N  E  G   : G  T  L  D  I  A  C  P  N  N  S  T  I  S  N  V  T  I  P  V  V  S  I  S  K  E  G  A  D  I  I  D  K  Y  I  N  S  G  K  K   : V  E  L  L  L  Y  S  P  D  R  P  I  V  D  Y  S  V  S  F  I  W  L  M  A  V  G  T  I  I  C  A  A  L  W  K  K  F  T  Q  S  K  E  S  D  D  Y  E  L  S  Q  E  P  P  S  *  S  Q  I  *  H  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0059I05.3" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23883" stop="24008"/>
                    <exon start="25018" stop="25176"/>
                    <exon start="26258" stop="26369"/>
                    <exon start="26475" stop="26594"/>
                    <exon start="27256" stop="27419"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>678</number_coding_nucleotides>
                  <number_encoded_amino_acids>226</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIMAFSWRFIGLSILVFLLNVSSIAHSAPTNADKSCSNEINMMLVKLWVNGGEEDSIVGLSAAFGSVLPTDTKRASRLPAVYTQPLNGCSASSTKLSGSIALARRGECEFITKATVAQAGGAGGVVLINNEGGTLDIACPNNSTISNVTIPVVSISKEGADIIDKYINSGKKVELLLYSPDRPIVDYSVSFIWLMAVGTIICAALWKKFTQSKESDDYELSQEPPS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="42488" PGL_stop="43301"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42488" e_stop="42559"/>
            <exon e_start="42862" e_stop="43051"/>
            <exon e_start="43162" e_stop="43301"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.872" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="42488" e_stop="42559" e_length="72"/>
          </exon>
          <intron i_serial="1" don_prob="0.872" acc_prob="0.999">
            <gDNA_intron_boundary i_start="42560" i_stop="42861" i_length="302"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42862" e_stop="43051" e_length="190"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="43052" i_stop="43161" i_length="110"/>
          </intron>
          <exon e_serial="3" e_score="0.993">
            <gDNA_exon_boundary e_start="43162" e_stop="43301" e_length="140"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42488" stop="42559"/>
              <exon start="42862" stop="43051"/>
              <exon start="43162" stop="43301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366537" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAGCTAGACACCCGGAGCTTCAACAATATATCCATTCTTCTGTCAATGGACTTCTTCCTTTCATACAAAAG : GGATTAGTTGAGAGAGTGGCGGTGATTTTTTCTGGTAGCAACAATGTACCTATCGAGAGATTTGTTTTCAAGATAAATGTAAACCAATCCTATGGTTCAAAGTTGGAGGAAGCTGATCTGGCGTTCTCTCTTAAATCATTTTTGATCAAGCTTCCATTGTCCCAATCGTTAATGAAGGTTCTTCCACCAG : ATTGCAGGTGGGAGATAACAGCTTACTTCCGCTCTCTCCCGCAGAGTGGTACCAGCAAAGATGCCGAAATTTGGGTCCCAACAGATACACAGCAGTGGCAGCAAGCACCTCTTATAACTCCTATTAAGTCCATGAGTAGT</gDNA_template>
            <first_frame> R  A  R  H  P  E  L  Q  Q  Y  I  H  S  S  V  N  G  L  L  P  F  I  Q  K  :  G  L  V  E  R  V  A  V  I  F  S  G  S  N  N  V  P  I  E  R  F  V  F  K  I  N  V  N  Q  S  Y  G  S  K  L  E  E  A  D  L  A  F  S  L  K  S  F  L  I  K  L  P  L  S  Q  S  L  M  K  V  L  P  P   : D  C  R  W  E  I  T  A  Y  F  R  S  L  P  Q  S  G  T  S  K  D  A  E  I  W  V  P  T  D  T  Q  Q  W  Q  Q  A  P  L  I  T  P  I  K  S  M  S  S </first_frame>
            <second_frame>  E  L  D  T  R  S  F  N  N  I  S  I  L  L  S  M  D  F  F  L  S  Y  K  R :   D  *  L  R  E  W  R  *  F  F  L  V  A  T  M  Y  L  S  R  D  L  F  S  R  *  M  *  T  N  P  M  V  Q  S  W  R  K  L  I  W  R  S  L  L  N  H  F  *  S  S  F  H  C  P  N  R  *  *  R  F  F  H  Q  :  I  A  G  G  R  *  Q  L  T  S  A  L  S  R  R  V  V  P  A  K  M  P  K  F  G  S  Q  Q  I  H  S  S  G  S  K  H  L  L  *  L  L  L  S  P  *  V   </second_frame>
            <third_frame>   S  *  T  P  G  A  S  T  I  Y  P  F  F  C  Q  W  T  S  S  F  H  T  K   : G  I  S  *  E  S  G  G  D  F  F  W  *  Q  Q  C  T  Y  R  E  I  C  F  Q  D  K  C  K  P  I  L  W  F  K  V  G  G  S  *  S  G  V  L  S  *  I  I  F  D  Q  A  S  I  V  P  I  V  N  E  G  S  S  T  R :   L  Q  V  G  D  N  S  L  L  P  L  S  P  A  E  W  Y  Q  Q  R  C  R  N  L  G  P  N  R  Y  T  A  V  A  A  S  T  S  Y  N  S  Y  *  V  H  E  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0059I05.3" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42488" stop="42559"/>
                    <exon start="42862" stop="43051"/>
                    <exon start="43162" stop="43301"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>402</number_coding_nucleotides>
                  <number_encoded_amino_acids>134</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RARHPELQQYIHSSVNGLLPFIQKGLVERVAVIFSGSNNVPIERFVFKINVNQSYGSKLEEADLAFSLKSFLIKLPLSQSLMKVLPPDCRWEITAYFRSLPQSGTSKDAEIWVPTDTQQWQQAPLITPIKSMSS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="58379" PGL_stop="44120"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58379" e_stop="58287"/>
            <exon e_start="58108" e_stop="58031"/>
            <exon e_start="57016" e_stop="56900"/>
            <exon e_start="56386" e_stop="56272"/>
            <exon e_start="55601" e_stop="55496"/>
            <exon e_start="55413" e_stop="55397"/>
            <exon e_start="55322" e_stop="55296"/>
            <exon e_start="55122" e_stop="55039"/>
            <exon e_start="54965" e_stop="54907"/>
            <exon e_start="53153" e_stop="53020"/>
            <exon e_start="52930" e_stop="52887"/>
            <exon e_start="49918" e_stop="49842"/>
            <exon e_start="48473" e_stop="48326"/>
            <exon e_start="47838" e_stop="47777"/>
            <exon e_start="47191" e_stop="47131"/>
            <exon e_start="46389" e_stop="46297"/>
            <exon e_start="46204" e_stop="46087"/>
            <exon e_start="44983" e_stop="44881"/>
            <exon e_start="44746" e_stop="44575"/>
            <exon e_start="44321" e_stop="44120"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.865" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.424" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.954" acc_prob="0.806" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.612" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.831" acc_prob="0.739" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.709" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.878" acc_prob="0.913" e_score="1.000"/>
          <exon-intron don_prob="0.926" acc_prob="0.837" e_score="0.990"/>
          <exon-intron don_prob="0.994" acc_prob="1.000" e_score="0.988"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="58379" e_stop="58287" e_length="93"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.958">
            <gDNA_intron_boundary i_start="58286" i_stop="58109" i_length="178"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="58108" e_stop="58031" e_length="78"/>
          </exon>
          <intron i_serial="2" don_prob="0.960" acc_prob="1.000">
            <gDNA_intron_boundary i_start="58030" i_stop="57017" i_length="1014"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="57016" e_stop="56900" e_length="117"/>
          </exon>
          <intron i_serial="3" don_prob="0.865" acc_prob="0.998">
            <gDNA_intron_boundary i_start="56899" i_stop="56387" i_length="513"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="56386" e_stop="56272" e_length="115"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="56271" i_stop="55602" i_length="670"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="55601" e_stop="55496" e_length="106"/>
          </exon>
          <intron i_serial="5" don_prob="0.994" acc_prob="0.424">
            <gDNA_intron_boundary i_start="55495" i_stop="55414" i_length="82"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="55413" e_stop="55397" e_length="17"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="55396" i_stop="55323" i_length="74"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="55322" e_stop="55296" e_length="27"/>
          </exon>
          <intron i_serial="7" don_prob="0.985" acc_prob="0.998">
            <gDNA_intron_boundary i_start="55295" i_stop="55123" i_length="173"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="55122" e_stop="55039" e_length="84"/>
          </exon>
          <intron i_serial="8" don_prob="0.965" acc_prob="0.999">
            <gDNA_intron_boundary i_start="55038" i_stop="54966" i_length="73"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="54965" e_stop="54907" e_length="59"/>
          </exon>
          <intron i_serial="9" don_prob="0.900" acc_prob="1.000">
            <gDNA_intron_boundary i_start="54906" i_stop="53154" i_length="1753"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="53153" e_stop="53020" e_length="134"/>
          </exon>
          <intron i_serial="10" don_prob="0.954" acc_prob="0.806">
            <gDNA_intron_boundary i_start="53019" i_stop="52931" i_length="89"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="52930" e_stop="52887" e_length="44"/>
          </exon>
          <intron i_serial="11" don_prob="0.994" acc_prob="0.997">
            <gDNA_intron_boundary i_start="52886" i_stop="49919" i_length="2968"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="49918" e_stop="49842" e_length="77"/>
          </exon>
          <intron i_serial="12" don_prob="0.612" acc_prob="0.993">
            <gDNA_intron_boundary i_start="49841" i_stop="48474" i_length="1368"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="48473" e_stop="48326" e_length="148"/>
          </exon>
          <intron i_serial="13" don_prob="0.990" acc_prob="0.995">
            <gDNA_intron_boundary i_start="48325" i_stop="47839" i_length="487"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="47838" e_stop="47777" e_length="62"/>
          </exon>
          <intron i_serial="14" don_prob="0.831" acc_prob="0.739">
            <gDNA_intron_boundary i_start="47776" i_stop="47192" i_length="585"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="47191" e_stop="47131" e_length="61"/>
          </exon>
          <intron i_serial="15" don_prob="0.991" acc_prob="1.000">
            <gDNA_intron_boundary i_start="47130" i_stop="46390" i_length="741"/>
          </intron>
          <exon e_serial="16" e_score="1.000">
            <gDNA_exon_boundary e_start="46389" e_stop="46297" e_length="93"/>
          </exon>
          <intron i_serial="16" don_prob="0.709" acc_prob="0.998">
            <gDNA_intron_boundary i_start="46296" i_stop="46205" i_length="92"/>
          </intron>
          <exon e_serial="17" e_score="1.000">
            <gDNA_exon_boundary e_start="46204" e_stop="46087" e_length="118"/>
          </exon>
          <intron i_serial="17" don_prob="0.878" acc_prob="0.913">
            <gDNA_intron_boundary i_start="46086" i_stop="44984" i_length="1103"/>
          </intron>
          <exon e_serial="18" e_score="0.990">
            <gDNA_exon_boundary e_start="44983" e_stop="44881" e_length="103"/>
          </exon>
          <intron i_serial="18" don_prob="0.926" acc_prob="0.837">
            <gDNA_intron_boundary i_start="44880" i_stop="44747" i_length="134"/>
          </intron>
          <exon e_serial="19" e_score="0.988">
            <gDNA_exon_boundary e_start="44746" e_stop="44575" e_length="172"/>
          </exon>
          <intron i_serial="19" don_prob="0.994" acc_prob="1.000">
            <gDNA_intron_boundary i_start="44574" i_stop="44322" i_length="253"/>
          </intron>
          <exon e_serial="20" e_score="0.995">
            <gDNA_exon_boundary e_start="44321" e_stop="44120" e_length="202"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58379" stop="58287"/>
              <exon start="58108" stop="58031"/>
              <exon start="57016" stop="56900"/>
              <exon start="56386" stop="56272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437090" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58378" stop="58287"/>
              <exon start="58108" stop="58031"/>
              <exon start="57016" stop="56900"/>
              <exon start="56386" stop="56272"/>
              <exon start="55601" stop="55496"/>
              <exon start="55413" stop="55397"/>
              <exon start="55322" stop="55296"/>
              <exon start="55122" stop="55039"/>
              <exon start="54965" stop="54907"/>
              <exon start="53153" stop="53035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315857" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58339" stop="58287"/>
              <exon start="58108" stop="58031"/>
              <exon start="57016" stop="56900"/>
              <exon start="56386" stop="56272"/>
              <exon start="55601" stop="55496"/>
              <exon start="55413" stop="55409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337280" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53148" stop="53020"/>
              <exon start="52930" stop="52887"/>
              <exon start="49918" stop="49842"/>
              <exon start="48473" stop="48326"/>
              <exon start="47838" stop="47777"/>
              <exon start="47191" stop="47131"/>
              <exon start="46389" stop="46297"/>
              <exon start="46204" stop="46165"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344253" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48361" stop="48326"/>
              <exon start="47838" stop="47777"/>
              <exon start="47191" stop="47131"/>
              <exon start="46389" stop="46297"/>
              <exon start="46204" stop="46087"/>
              <exon start="44983" stop="44881"/>
              <exon start="44746" stop="44575"/>
              <exon start="44321" stop="44120"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48361" stop="48326"/>
              <exon start="47838" stop="47777"/>
              <exon start="47191" stop="47131"/>
              <exon start="46389" stop="46297"/>
              <exon start="46204" stop="46087"/>
              <exon start="44983" stop="44881"/>
              <exon start="44746" stop="44575"/>
              <exon start="44321" stop="44284"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737315" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGTTCAATAAAATCTTCGATATGTCAATGGACCTCGACCCAGATGAAGTCTTCCGTGATGATGAAGATGACCCTGAAAATGAATTCTTCAAG : GAAAGAGATAATACTAAGGAGTTCTTGGTATATCTTGTGGATGCTTCACCTAAAATGTTTTCCTCTACTTGCCCAACG : GATGATGAAAAGATTGCAACTCATTTTCAAGTTGCCGTCAGCTCAATTGCACAGTCTCTCAGAACTCAGATTATTAATAGGTCTTATGATGAAGTTTCTATATGCTTCTTTAACACT : CGGGGAAAAAAGAACTTGCAGGACCTAAGTGGCGTTTATGTATTTAATGTCCGAGAAAGAGAGGATCTGGACAGACCAACAGCTAGGCTAATTAAAGAATTTGATCAAATAGAAG : AAAGATTTGAAAAAGAAATAGGAAGTAAGTACGGCATTGTGCCTGGCTCTCGTGACAATTCTCTTTACAATGCTCTTTGGGTTGCACAAGCCCTTCTCCGTAAAGG : ATCTGCAAAAACTGCTG : ATGAGGACAACGATGCAGCGTGCCAAA : GATGCTCAAGATCTTGGTATTACAATTGAGCTTCTTCCACTAAGCCGGCCAGATGATGAGTTCAACGTTTCCCTTTTTTATGCT : GATTTACTTGGTCTGGAGGGTGATGACCTTGCTCAGTTCAAAGCTCTGATAGGAGAAAG : GTTTGAAGATCTGAACGACCAGCTTAGGAAACGCATGTTTAAGAAGCGCAGAGTTCGAAGACTTCGACTTGTAATTTTTAATGGATTATCTATCGAACTTAACACCTATGCTTTGATCCGTCCAACTAATCCAG : GGACAATTACTTGGCTTGATTCGATGACTAATCTTCCTTTGAAG : ACTGAGAGAACCTTCATATGTGCTGATACTGGTGCTATAGTTCAGGAGCCTCTAAAACGCTTTCAGTCTTACAAAAA : TGAGAATGTCATCTTTTCTGCGGATGAGCTTTCAGAAGTCAAAAGAGTTTCAACTGGACATCTTCGTCTGTTGGGCTTCAAGCCTTTGAGCTGCTTAAAAGACTATCATAACCTGAAGCCAGCAACTTTTGTCTTTCCCAGTGATGAG : GAAGTGGTTGGAAGCACTTGTCTTTTCGTTGCTCTCCAAAGATCAATGTTGCGGCTTAAGCG : TTTTGCAGTTGCTTTCTATGGGAATTTAAGTCATCCTCAATTGGTTGCTCTTGTTGCACAA : GATGAAGTAATGACTCCTAGTGGTCAAGTCGAGCCACCAGGGATGCATCTGATTTATCTTCCATATTCTGATGATATCAGACATGTTGAAGAG : CTTCATACTGATCCTAATTCCGTGCCTCATGCCACTGATGACCAGATAAAGAAGGCCTCCGCTTTAGTGAGACGTATTGACCTCAAAGATTTTTCTGTGTGGCAATTTGCTAATCCTG : CATTGCAGAGACATTATGCAGTATTACAAGCTCTTGCACTTGATGAAGATGAGATGCCTGAAATTAAAGACGAGACTCTTCCAGATGAAGAAGGAATGGCTAG : GCCTGGTATTGTCAAAGCATTGGAGGAATTCAAGCTCTCTGTTTATGGAGAGAGCTATAAGGATGAAGACTCAAACATTGAAGGAAAAGCTGAGCCAACTAGGAAACGGAAAGCAAATGCTATAAAAGAATATGGTAATTATGAGTGGGCTGACCTTGCAGATAATGGGAAG : TTGAAGGACATGACAGTTGTAGAATTGAAGTATTATCTAGGTGCACATGACCTTCCAGTCAGTGGAAAGAAAGAAGCCTTGATTAGTAGGATCTTAACTCACATGGGCAAGTGAGTTGTGACTTTCAGATCTTTGGCGGTCTGCCATTAGTTTGTACAGAATGGTTCTTTTTGCTGCAGCCTGTTGAGTAGTTAGTTTTTGT</gDNA_template>
            <first_frame> L  F  N  K  I  F  D  M  S  M  D  L  D  P  D  E  V  F  R  D  D  E  D  D  P  E  N  E  F  F  K  :  E  R  D  N  T  K  E  F  L  V  Y  L  V  D  A  S  P  K  M  F  S  S  T  C  P  T  :  D  D  E  K  I  A  T  H  F  Q  V  A  V  S  S  I  A  Q  S  L  R  T  Q  I  I  N  R  S  Y  D  E  V  S  I  C  F  F  N  T  :  R  G  K  K  N  L  Q  D  L  S  G  V  Y  V  F  N  V  R  E  R  E  D  L  D  R  P  T  A  R  L  I  K  E  F  D  Q  I  E   : E  R  F  E  K  E  I  G  S  K  Y  G  I  V  P  G  S  R  D  N  S  L  Y  N  A  L  W  V  A  Q  A  L  L  R  K  G :   S  A  K  T  A   : D  E  D  N  D  A  A  C  Q   : R  C  S  R  S  W  Y  Y  N  *  A  S  S  T  K  P  A  R  *  *  V  Q  R  F  P  F  L  C   : *  F  T  W  S  G  G  *  *  P  C  S  V  Q  S  S  D  R  R  K  :  V  *  R  S  E  R  P  A  *  E  T  H  V  *  E  A  Q  S  S  K  T  S  T  C  N  F  *  W  I  I  Y  R  T  *  H  L  C  F  D  P  S  N  *  S  R :   D  N  Y  L  A  *  F  D  D  *  S  S  F  E   : D  *  E  N  L  H  M  C  *  Y  W  C  Y  S  S  G  A  S  K  T  L  S  V  L  Q  K  :  *  E  C  H  L  F  C  G  *  A  F  R  S  Q  K  S  F  N  W  T  S  S  S  V  G  L  Q  A  F  E  L  L  K  R  L  S  *  P  E  A  S  N  F  C  L  S  Q  *  *   : G  S  G  W  K  H  L  S  F  R  C  S  P  K  I  N  V  A  A  *  A  :  F  C  S  C  F  L  W  E  F  K  S  S  S  I  G  C  S  C  C  T   : R  *  S  N  D  S  *  W  S  S  R  A  T  R  D  A  S  D  L  S  S  I  F  *  *  Y  Q  T  C  *  R   : A  S  Y  *  S  *  F  R  A  S  C  H  *  *  P  D  K  E  G  L  R  F  S  E  T  Y  *  P  Q  R  F  F  C  V  A  I  C  *  S  C :   I  A  E  T  L  C  S  I  T  S  S  C  T  *  *  R  *  D  A  *  N  *  R  R  D  S  S  R  *  R  R  N  G  *  :  A  W  Y  C  Q  S  I  G  G  I  Q  A  L  C  L  W  R  E  L  *  G  *  R  L  K  H  *  R  K  S  *  A  N  *  E  T  E  S  K  C  Y  K  R  I  W  *  L  *  V  G  *  P  C  R  *  W  E   : V  E  G  H  D  S  C  R  I  E  V  L  S  R  C  T  *  P  S  S  Q  W  K  E  R  S  L  D  *  *  D  L  N  S  H  G  Q  V  S  C  D  F  Q  I  F  G  G  L  P  L  V  C  T  E  W  F  F  L  L  Q  P  V  E  *  L  V  F   </first_frame>
            <second_frame>  C  S  I  K  S  S  I  C  Q  W  T  S  T  Q  M  K  S  S  V  M  M  K  M  T  L  K  M  N  S  S  R :   K  E  I  I  L  R  S  S  W  Y  I  L  W  M  L  H  L  K  C  F  P  L  L  A  Q  R :   M  M  K  R  L  Q  L  I  F  K  L  P  S  A  Q  L  H  S  L  S  E  L  R  L  L  I  G  L  M  M  K  F  L  Y  A  S  L  T  L :   G  E  K  R  T  C  R  T  *  V  A  F  M  Y  L  M  S  E  K  E  R  I  W  T  D  Q  Q  L  G  *  L  K  N  L  I  K  *  K  :  K  D  L  K  K  K  *  E  V  S  T  A  L  C  L  A  L  V  T  I  L  F  T  M  L  F  G  L  H  K  P  F  S  V  K   : D  L  Q  K  L  L  :  M  R  T  T  M  Q  R  A  K  :  D  A  Q  D  L  G  I  T  I  E  L  L  P  L  S  R  P  D  D  E  F  N  V  S  L  F  Y  A  :  D  L  L  G  L  E  G  D  D  L  A  Q  F  K  A  L  I  G  E  R :   F  E  D  L  N  D  Q  L  R  K  R  M  F  K  K  R  R  V  R  R  L  R  L  V  I  F  N  G  L  S  I  E  L  N  T  Y  A  L  I  R  P  T  N  P   : G  T  I  T  W  L  D  S  M  T  N  L  P  L  K  :  T  E  R  T  F  I  C  A  D  T  G  A  I  V  Q  E  P  L  K  R  F  Q  S  Y  K  N :   E  N  V  I  F  S  A  D  E  L  S  E  V  K  R  V  S  T  G  H  L  R  L  L  G  F  K  P  L  S  C  L  K  D  Y  H  N  L  K  P  A  T  F  V  F  P  S  D  E  :  E  V  V  G  S  T  C  L  F  V  A  L  Q  R  S  M  L  R  L  K  R :   F  A  V  A  F  Y  G  N  L  S  H  P  Q  L  V  A  L  V  A  Q  :  D  E  V  M  T  P  S  G  Q  V  E  P  P  G  M  H  L  I  Y  L  P  Y  S  D  D  I  R  H  V  E  E  :  L  H  T  D  P  N  S  V  P  H  A  T  D  D  Q  I  K  K  A  S  A  L  V  R  R  I  D  L  K  D  F  S  V  W  Q  F  A  N  P   : A  L  Q  R  H  Y  A  V  L  Q  A  L  A  L  D  E  D  E  M  P  E  I  K  D  E  T  L  P  D  E  E  G  M  A  R :   P  G  I  V  K  A  L  E  E  F  K  L  S  V  Y  G  E  S  Y  K  D  E  D  S  N  I  E  G  K  A  E  P  T  R  K  R  K  A  N  A  I  K  E  Y  G  N  Y  E  W  A  D  L  A  D  N  G  K  :  L  K  D  M  T  V  V  E  L  K  Y  Y  L  G  A  H  D  L  P  V  S  G  K  K  E  A  L  I  S  R  I  L  T  H  M  G  K  *  V  V  T  F  R  S  L  A  V  C  H  *  F  V  Q  N  G  S  F  C  C  S  L  L  S  S  *  F  L  </second_frame>
            <third_frame>   V  Q  *  N  L  R  Y  V  N  G  P  R  P  R  *  S  L  P  *  *  *  R  *  P  *  K  *  I  L  Q   : G  K  R  *  Y  *  G  V  L  G  I  S  C  G  C  F  T  *  N  V  F  L  Y  L  P  N   : G  *  *  K  D  C  N  S  F  S  S  C  R  Q  L  N  C  T  V  S  Q  N  S  D  Y  *  *  V  L  *  *  S  F  Y  M  L  L  *  H   : S  G  K  K  E  L  A  G  P  K  W  R  L  C  I  *  C  P  R  K  R  G  S  G  Q  T  N  S  *  A  N  *  R  I  *  S  N  R  R :   K  I  *  K  R  N  R  K  *  V  R  H  C  A  W  L  S  *  Q  F  S  L  Q  C  S  L  G  C  T  S  P  S  P  *  R  :  I  C  K  N  C  * :   *  G  Q  R  C  S  V  P  K :   M  L  K  I  L  V  L  Q  L  S  F  F  H  *  A  G  Q  M  M  S  S  T  F  P  F  F  M  L :   I  Y  L  V  W  R  V  M  T  L  L  S  S  K  L  *  *  E  K   : G  L  K  I  *  T  T  S  L  G  N  A  C  L  R  S  A  E  F  E  D  F  D  L  *  F  L  M  D  Y  L  S  N  L  T  P  M  L  *  S  V  Q  L  I  Q  :  G  Q  L  L  G  L  I  R  *  L  I  F  L  *  R :   L  R  E  P  S  Y  V  L  I  L  V  L  *  F  R  S  L  *  N  A  F  S  L  T  K   : M  R  M  S  S  F  L  R  M  S  F  Q  K  S  K  E  F  Q  L  D  I  F  V  C  W  A  S  S  L  *  A  A  *  K  T  I  I  T  *  S  Q  Q  L  L  S  F  P  V  M  R :   K  W  L  E  A  L  V  F  S  L  L  S  K  D  Q  C  C  G  L  S   : V  L  Q  L  L  S  M  G  I  *  V  I  L  N  W  L  L  L  L  H  K :   M  K  *  *  L  L  V  V  K  S  S  H  Q  G  C  I  *  F  I  F  H  I  L  M  I  S  D  M  L  K  S :   F  I  L  I  L  I  P  C  L  M  P  L  M  T  R  *  R  R  P  P  L  *  *  D  V  L  T  S  K  I  F  L  C  G  N  L  L  I  L  :  H  C  R  D  I  M  Q  Y  Y  K  L  L  H  L  M  K  M  R  C  L  K  L  K  T  R  L  F  Q  M  K  K  E  W  L   : G  L  V  L  S  K  H  W  R  N  S  S  S  L  F  M  E  R  A  I  R  M  K  T  Q  T  L  K  E  K  L  S  Q  L  G  N  G  K  Q  M  L  *  K  N  M  V  I  M  S  G  L  T  L  Q  I  M  G  S :   *  R  T  *  Q  L  *  N  *  S  I  I  *  V  H  M  T  F  Q  S  V  E  R  K  K  P  *  L  V  G  S  *  L  T  W  A  S  E  L  *  L  S  D  L  W  R  S  A  I  S  L  Y  R  M  V  L  F  A  A  A  C  *  V  V  S  F  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0059I05.3" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55580" stop="55496"/>
                    <exon start="55413" stop="55397"/>
                    <exon start="55322" stop="55296"/>
                    <exon start="55122" stop="55039"/>
                    <exon start="54965" stop="54907"/>
                    <exon start="53153" stop="53020"/>
                    <exon start="52930" stop="52887"/>
                    <exon start="49918" stop="49842"/>
                    <exon start="48473" stop="48326"/>
                    <exon start="47838" stop="47777"/>
                    <exon start="47191" stop="47131"/>
                    <exon start="46389" stop="46297"/>
                    <exon start="46204" stop="46087"/>
                    <exon start="44983" stop="44881"/>
                    <exon start="44746" stop="44575"/>
                    <exon start="44321" stop="44208"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1395</number_coding_nucleotides>
                  <number_encoded_amino_acids>465</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EVSTALCLALVTILFTMLFGLHKPFSVKDLQKLLMRTTMQRAKDAQDLGITIELLPLSRPDDEFNVSLFYADLLGLEGDDLAQFKALIGERFEDLNDQLRKRMFKKRRVRRLRLVIFNGLSIELNTYALIRPTNPGTITWLDSMTNLPLKTERTFICADTGAIVQEPLKRFQSYKNENVIFSADELSEVKRVSTGHLRLLGFKPLSCLKDYHNLKPATFVFPSDEEVVGSTCLFVALQRSMLRLKRFAVAFYGNLSHPQLVALVAQDEVMTPSGQVEPPGMHLIYLPYSDDIRHVEELHTDPNSVPHATDDQIKKASALVRRIDLKDFSVWQFANPALQRHYAVLQALALDEDEMPEIKDETLPDEEGMARPGIVKALEEFKLSVYGESYKDEDSNIEGKAEPTRKRKANAIKEYGNYEWADLADNGKLKDMTVVELKYYLGAHDLPVSGKKEALISRILTHMGK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0059I05.3" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58378" stop="58287"/>
                    <exon start="58108" stop="58031"/>
                    <exon start="57016" stop="56900"/>
                    <exon start="56386" stop="56359"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>312</number_coding_nucleotides>
                  <number_encoded_amino_acids>104</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CSIKSSICQWTSTQMKSSVMMKMTLKMNSSRKEIILRSSWYILWMLHLKCFPLLAQRMMKRLQLIFKLPSAQLHSLSELRLLIGLMMKFLYASLTLGEKRTCRT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="58379" e_stop="58287"/>
            <exon e_start="58108" e_stop="58031"/>
            <exon e_start="57016" e_stop="56900"/>
            <exon e_start="56386" e_stop="56272"/>
            <exon e_start="55601" e_stop="55496"/>
            <exon e_start="55413" e_stop="55364"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.958" e_score="0.987"/>
          <exon-intron don_prob="0.960" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.865" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.424" e_score="1.000"/>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="58379" e_stop="58287" e_length="93"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.958">
            <gDNA_intron_boundary i_start="58286" i_stop="58109" i_length="178"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="58108" e_stop="58031" e_length="78"/>
          </exon>
          <intron i_serial="2" don_prob="0.960" acc_prob="1.000">
            <gDNA_intron_boundary i_start="58030" i_stop="57017" i_length="1014"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="57016" e_stop="56900" e_length="117"/>
          </exon>
          <intron i_serial="3" don_prob="0.865" acc_prob="0.998">
            <gDNA_intron_boundary i_start="56899" i_stop="56387" i_length="513"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="56386" e_stop="56272" e_length="115"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="56271" i_stop="55602" i_length="670"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="55601" e_stop="55496" e_length="106"/>
          </exon>
          <intron i_serial="5" don_prob="0.994" acc_prob="0.424">
            <gDNA_intron_boundary i_start="55495" i_stop="55414" i_length="82"/>
          </intron>
          <exon e_serial="6" e_score="0.980">
            <gDNA_exon_boundary e_start="55413" e_stop="55364" e_length="50"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58379" stop="58287"/>
              <exon start="58108" stop="58031"/>
              <exon start="57016" stop="56900"/>
              <exon start="56386" stop="56272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437090" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58365" stop="58287"/>
              <exon start="58108" stop="58031"/>
              <exon start="57016" stop="56900"/>
              <exon start="56386" stop="56272"/>
              <exon start="55601" stop="55496"/>
              <exon start="55413" stop="55364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342637" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58339" stop="58287"/>
              <exon start="58108" stop="58031"/>
              <exon start="57016" stop="56900"/>
              <exon start="56386" stop="56272"/>
              <exon start="55601" stop="55496"/>
              <exon start="55413" stop="55409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337280" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGTTCAATAAAATCTTCGATATGTCAATGGACCTCGACCCAGATGAAGTCTTCCGTGATGATGAAGATGACCCTGAAAATGAATTCTTCAAG : GAAAGAGATAATACTAAGGAGTTCTTGGTATATCTTGTGGATGCTTCACCTAAAATGTTTTCCTCTACTTGCCCAACG : GATGATGAAAAGATTGCAACTCATTTTCAAGTTGCCGTCAGCTCAATTGCACAGTCTCTCAGAACTCAGATTATTAATAGGTCTTATGATGAAGTTTCTATATGCTTCTTTAACACT : CGGGGAAAAAAGAACTTGCAGGACCTAAGTGGCGTTTATGTATTTAATGTCCGAGAAAGAGAGGATCTGGACAGACCAACAGCTAGGCTAATTAAAGAATTTGATCAAATAGAAG : AAAGATTTGAAAAAGAAATAGGAAGTAAGTACGGCATTGTGCCTGGCTCTCGTGACAATTCTCTTTACAATGCTCTTTGGGTTGCACAAGCCCTTCTCCGTAAAGG : ATCTGCAAAAACTGCTGATAAACGTATTCTCTTGCTTACAAATGAAGATG</gDNA_template>
            <first_frame> L  F  N  K  I  F  D  M  S  M  D  L  D  P  D  E  V  F  R  D  D  E  D  D  P  E  N  E  F  F  K  :  E  R  D  N  T  K  E  F  L  V  Y  L  V  D  A  S  P  K  M  F  S  S  T  C  P  T  :  D  D  E  K  I  A  T  H  F  Q  V  A  V  S  S  I  A  Q  S  L  R  T  Q  I  I  N  R  S  Y  D  E  V  S  I  C  F  F  N  T  :  R  G  K  K  N  L  Q  D  L  S  G  V  Y  V  F  N  V  R  E  R  E  D  L  D  R  P  T  A  R  L  I  K  E  F  D  Q  I  E   : E  R  F  E  K  E  I  G  S  K  Y  G  I  V  P  G  S  R  D  N  S  L  Y  N  A  L  W  V  A  Q  A  L  L  R  K  G :   S  A  K  T  A  D  K  R  I  L  L  L  T  N  E  D  </first_frame>
            <second_frame>  C  S  I  K  S  S  I  C  Q  W  T  S  T  Q  M  K  S  S  V  M  M  K  M  T  L  K  M  N  S  S  R :   K  E  I  I  L  R  S  S  W  Y  I  L  W  M  L  H  L  K  C  F  P  L  L  A  Q  R :   M  M  K  R  L  Q  L  I  F  K  L  P  S  A  Q  L  H  S  L  S  E  L  R  L  L  I  G  L  M  M  K  F  L  Y  A  S  L  T  L :   G  E  K  R  T  C  R  T  *  V  A  F  M  Y  L  M  S  E  K  E  R  I  W  T  D  Q  Q  L  G  *  L  K  N  L  I  K  *  K  :  K  D  L  K  K  K  *  E  V  S  T  A  L  C  L  A  L  V  T  I  L  F  T  M  L  F  G  L  H  K  P  F  S  V  K   : D  L  Q  K  L  L  I  N  V  F  S  C  L  Q  M  K  M </second_frame>
            <third_frame>   V  Q  *  N  L  R  Y  V  N  G  P  R  P  R  *  S  L  P  *  *  *  R  *  P  *  K  *  I  L  Q   : G  K  R  *  Y  *  G  V  L  G  I  S  C  G  C  F  T  *  N  V  F  L  Y  L  P  N   : G  *  *  K  D  C  N  S  F  S  S  C  R  Q  L  N  C  T  V  S  Q  N  S  D  Y  *  *  V  L  *  *  S  F  Y  M  L  L  *  H   : S  G  K  K  E  L  A  G  P  K  W  R  L  C  I  *  C  P  R  K  R  G  S  G  Q  T  N  S  *  A  N  *  R  I  *  S  N  R  R :   K  I  *  K  R  N  R  K  *  V  R  H  C  A  W  L  S  *  Q  F  S  L  Q  C  S  L  G  C  T  S  P  S  P  *  R  :  I  C  K  N  C  *  *  T  Y  S  L  A  Y  K  *  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0059I05.3" strand="-"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58379" stop="58287"/>
                    <exon start="58108" stop="58031"/>
                    <exon start="57016" stop="56900"/>
                    <exon start="56386" stop="56272"/>
                    <exon start="55601" stop="55496"/>
                    <exon start="55413" stop="55365"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>558</number_coding_nucleotides>
                  <number_encoded_amino_acids>186</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFNKIFDMSMDLDPDEVFRDDEDDPENEFFKERDNTKEFLVYLVDASPKMFSSTCPTDDEKIATHFQVAVSSIAQSLRTQIINRSYDEVSICFFNTRGKKNLQDLSGVYVFNVREREDLDRPTARLIKEFDQIEERFEKEIGSKYGIVPGSRDNSLYNALWVAQALLRKGSAKTADKRILLLTNED</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="59431" PGL_stop="59041"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59431" e_stop="59041"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.969"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.969">
            <gDNA_exon_boundary e_start="59431" e_stop="59041" e_length="391"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59431" stop="59041"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560774" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAAGATGAACTTGCAGCTAGGCCTGCTTTTTCTTTTGCTGTGTGGTCTTGATGAGTCGCCGTGAAGTGGGCTATTCTATGTCAGAAGATGCCCTTCTTTGCTGGATGTCATTGTCTTTTTTCCCGAGTGTCTTGGTAGTAGTTCATTTTTATACAGATGAAAACGTTAGGATTATTCATTGGTGGCCTTTCTATTTGGTATAGGAGGGTTTGGGGGTTGAGGGATGGTCGTAAATGCACACAGCATTTATCATGTATTATATTTGTTTGGGTACCAGATGATGCATATACTGTCTGAATTGGGTGAATTACTACCCTAAAAGTTTTGTAAGCCCCGGTTGTAGTTTATGTTCAGTATTTATACATCATTGGTTTATTTTTGGGTCTAAAG</gDNA_template>
            <first_frame> R  R  *  T  C  S  *  A  C  F  F  F  C  C  V  V  L  M  S  R  R  E  V  G  Y  S  M  S  E  D  A  L  L  C  W  M  S  L  S  F  F  P  S  V  L  V  V  V  H  F  Y  T  D  E  N  V  R  I  I  H  W  W  P  F  Y  L  V  *  E  G  L  G  V  E  G  W  S  *  M  H  T  A  F  I  M  Y  Y  I  C  L  G  T  R  *  C  I  Y  C  L  N  W  V  N  Y  Y  P  K  S  F  V  S  P  G  C  S  L  C  S  V  F  I  H  H  W  F  I  F  G  S  K  </first_frame>
            <second_frame>  E  D  E  L  A  A  R  P  A  F  S  F  A  V  W  S  *  *  V  A  V  K  W  A  I  L  C  Q  K  M  P  F  F  A  G  C  H  C  L  F  S  R  V  S  W  *  *  F  I  F  I  Q  M  K  T  L  G  L  F  I  G  G  L  S  I  W  Y  R  R  V  W  G  L  R  D  G  R  K  C  T  Q  H  L  S  C  I  I  F  V  W  V  P  D  D  A  Y  T  V  *  I  G  *  I  T  T  L  K  V  L  *  A  P  V  V  V  Y  V  Q  Y  L  Y  I  I  G  L  F  L  G  L  K </second_frame>
            <third_frame>   K  M  N  L  Q  L  G  L  L  F  L  L  L  C  G  L  D  E  S  P  *  S  G  L  F  Y  V  R  R  C  P  S  L  L  D  V  I  V  F  F  P  E  C  L  G  S  S  S  F  L  Y  R  *  K  R  *  D  Y  S  L  V  A  F  L  F  G  I  G  G  F  G  G  *  G  M  V  V  N  A  H  S  I  Y  H  V  L  Y  L  F  G  Y  Q  M  M  H  I  L  S  E  L  G  E  L  L  P  *  K  F  C  K  P  R  L  *  F  M  F  S  I  Y  T  S  L  V  Y  F  W  V  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0059I05.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="62108" PGL_stop="59549"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62108" e_stop="62060"/>
            <exon e_start="61042" e_stop="60903"/>
            <exon e_start="60784" e_stop="60645"/>
            <exon e_start="60558" e_stop="60398"/>
            <exon e_start="59911" e_stop="59776"/>
            <exon e_start="59667" e_stop="59549"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.708" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="62108" e_stop="62060" e_length="49"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="0.997">
            <gDNA_intron_boundary i_start="62059" i_stop="61043" i_length="1017"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="61042" e_stop="60903" e_length="140"/>
          </exon>
          <intron i_serial="2" don_prob="0.708" acc_prob="0.996">
            <gDNA_intron_boundary i_start="60902" i_stop="60785" i_length="118"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="60784" e_stop="60645" e_length="140"/>
          </exon>
          <intron i_serial="3" don_prob="0.989" acc_prob="0.997">
            <gDNA_intron_boundary i_start="60644" i_stop="60559" i_length="86"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="60558" e_stop="60398" e_length="161"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="60397" i_stop="59912" i_length="486"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="59911" e_stop="59776" e_length="136"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.000">
            <gDNA_intron_boundary i_start="59775" i_stop="59668" i_length="108"/>
          </intron>
          <exon e_serial="6" e_score="0.992">
            <gDNA_exon_boundary e_start="59667" e_stop="59549" e_length="119"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62108" stop="62060"/>
              <exon start="61042" stop="60903"/>
              <exon start="60784" stop="60645"/>
              <exon start="60558" stop="60398"/>
              <exon start="59911" stop="59776"/>
              <exon start="59667" stop="59584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689351" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62106" stop="62060"/>
              <exon start="61042" stop="60903"/>
              <exon start="60784" stop="60645"/>
              <exon start="60558" stop="60398"/>
              <exon start="59911" stop="59838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332894" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60738" stop="60645"/>
              <exon start="60558" stop="60398"/>
              <exon start="59911" stop="59776"/>
              <exon start="59667" stop="59549"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333447" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTCCGTCGAGCTGAAAAATCACATCTGAAGTGTCTCTTGGTCCAAGTG : ATAGCTGATGCTCTTTACTACAATGCACCCTTGACATGGAACATCCTTCAAAAGCTTGGCCTTGCTCTAGAGGTGTTTAATCTCTGGTTTCTGATGTTGGGACAAACAAAAAAGAGCGGAAAACGGGTTAACTTCAAAAG : GGAACATGACAAAAAGGTTTGCTGCTTGGGCTTGACATCTTTGCTCCCTCTTCCTGTGGATCAATTCCCAAGGGAAGCCTTAGATCGTGTTTTCAAAGCAACTCTAGATCTGCTTATTGCCTACAAAGATCAAGTAGCAG : AAGCGGCTAAGGAGGATGAGGCAGAAGACGATGATGATATGAATGGCTTGCAAACTGATGAGGATGACGATGAAGATGACGAGTCTGACAAGGAAATGGGGGATGATGCTGAGGAAGGGGATGAAGCTGACAGTACTAGGCTTCAAAAATTGGCTGCACAG : GCAAAGGCTTTCCGCTCACATGACGAGGATGATGATGATGATGACTCTGATGACGATTTTAGTGATGATGATGAAGAGATGCAGTCACCCCTTGATGAGGTGGACCCTTTCATTTTCTTTGTGGAAACAATTAAAG : CTATGCAAGCATCTGATCCAGTGAAGTTCCAGAGCCTGACCCAGACTTTGGACTTCCGTTATCAAGCATTGGCAAATGGTGTTGCTGTGCATGCTGAGGAGAGAAGAGCAGAGATAGAG</gDNA_template>
            <first_frame> S  P  S  S  *  K  I  T  S  E  V  S  L  G  P  S   : D  S  *  C  S  L  L  Q  C  T  L  D  M  E  H  P  S  K  A  W  P  C  S  R  G  V  *  S  L  V  S  D  V  G  T  N  K  K  E  R  K  T  G  *  L  Q  K  :  G  T  *  Q  K  G  L  L  L  G  L  D  I  F  A  P  S  S  C  G  S  I  P  K  G  S  L  R  S  C  F  Q  S  N  S  R  S  A  Y  C  L  Q  R  S  S  S  R :   S  G  *  G  G  *  G  R  R  R  *  *  Y  E  W  L  A  N  *  *  G  *  R  *  R  *  R  V  *  Q  G  N  G  G  *  C  *  G  R  G  *  S  *  Q  Y  *  A  S  K  I  G  C  T   : G  K  G  F  P  L  T  *  R  G  *  *  *  *  *  L  *  *  R  F  *  *  *  *  *  R  D  A  V  T  P  *  *  G  G  P  F  H  F  L  C  G  N  N  *  S :   Y  A  S  I  *  S  S  E  V  P  E  P  D  P  D  F  G  L  P  L  S  S  I  G  K  W  C  C  C  A  C  *  G  E  K  S  R  D  R  </first_frame>
            <second_frame>  L  R  R  A  E  K  S  H  L  K  C  L  L  V  Q  V  :  I  A  D  A  L  Y  Y  N  A  P  L  T  W  N  I  L  Q  K  L  G  L  A  L  E  V  F  N  L  W  F  L  M  L  G  Q  T  K  K  S  G  K  R  V  N  F  K  R :   E  H  D  K  K  V  C  C  L  G  L  T  S  L  L  P  L  P  V  D  Q  F  P  R  E  A  L  D  R  V  F  K  A  T  L  D  L  L  I  A  Y  K  D  Q  V  A   : E  A  A  K  E  D  E  A  E  D  D  D  D  M  N  G  L  Q  T  D  E  D  D  D  E  D  D  E  S  D  K  E  M  G  D  D  A  E  E  G  D  E  A  D  S  T  R  L  Q  K  L  A  A  Q  :  A  K  A  F  R  S  H  D  E  D  D  D  D  D  D  S  D  D  D  F  S  D  D  D  E  E  M  Q  S  P  L  D  E  V  D  P  F  I  F  F  V  E  T  I  K   : A  M  Q  A  S  D  P  V  K  F  Q  S  L  T  Q  T  L  D  F  R  Y  Q  A  L  A  N  G  V  A  V  H  A  E  E  R  R  A  E  I  E </second_frame>
            <third_frame>   S  V  E  L  K  N  H  I  *  S  V  S  W  S  K  * :   *  L  M  L  F  T  T  M  H  P  *  H  G  T  S  F  K  S  L  A  L  L  *  R  C  L  I  S  G  F  *  C  W  D  K  Q  K  R  A  E  N  G  L  T  S  K   : G  N  M  T  K  R  F  A  A  W  A  *  H  L  C  S  L  F  L  W  I  N  S  Q  G  K  P  *  I  V  F  S  K  Q  L  *  I  C  L  L  P  T  K  I  K  *  Q  :  K  R  L  R  R  M  R  Q  K  T  M  M  I  *  M  A  C  K  L  M  R  M  T  M  K  M  T  S  L  T  R  K  W  G  M  M  L  R  K  G  M  K  L  T  V  L  G  F  K  N  W  L  H  R :   Q  R  L  S  A  H  M  T  R  M  M  M  M  M  T  L  M  T  I  L  V  M  M  M  K  R  C  S  H  P  L  M  R  W  T  L  S  F  S  L  W  K  Q  L  K  :  L  C  K  H  L  I  Q  *  S  S  R  A  *  P  R  L  W  T  S  V  I  K  H  W  Q  M  V  L  L  C  M  L  R  R  E  E  Q  R  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0059I05.3" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62107" stop="62060"/>
                    <exon start="61042" stop="60903"/>
                    <exon start="60784" stop="60645"/>
                    <exon start="60558" stop="60398"/>
                    <exon start="59911" stop="59776"/>
                    <exon start="59667" stop="59549"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>744</number_coding_nucleotides>
                  <number_encoded_amino_acids>248</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRRAEKSHLKCLLVQVIADALYYNAPLTWNILQKLGLALEVFNLWFLMLGQTKKSGKRVNFKREHDKKVCCLGLTSLLPLPVDQFPREALDRVFKATLDLLIAYKDQVAEAAKEDEAEDDDDMNGLQTDEDDDEDDESDKEMGDDAEEGDEADSTRLQKLAAQAKAFRSHDEDDDDDDSDDDFSDDDEEMQSPLDEVDPFIFFVETIKAMQASDPVKFQSLTQTLDFRYQALANGVAVHAEERRAEIE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="71468" PGL_stop="67492"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="71468" e_stop="71228"/>
            <exon e_start="69361" e_stop="69226"/>
            <exon e_start="69051" e_stop="68964"/>
            <exon e_start="68826" e_stop="68677"/>
            <exon e_start="68130" e_stop="67968"/>
            <exon e_start="67653" e_stop="67492"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.980" e_score="0.988"/>
          <exon-intron don_prob="0.942" acc_prob="0.957" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.429" acc_prob="0.998" e_score="0.993"/>
          <exon-intron don_prob="0.146" acc_prob="0.942" e_score="1.000"/>
          <exon-only e_score="0.975"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="71468" e_stop="71228" e_length="241"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.980">
            <gDNA_intron_boundary i_start="71227" i_stop="69362" i_length="1866"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="69361" e_stop="69226" e_length="136"/>
          </exon>
          <intron i_serial="2" don_prob="0.942" acc_prob="0.957">
            <gDNA_intron_boundary i_start="69225" i_stop="69052" i_length="174"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="69051" e_stop="68964" e_length="88"/>
          </exon>
          <intron i_serial="3" don_prob="0.962" acc_prob="0.997">
            <gDNA_intron_boundary i_start="68963" i_stop="68827" i_length="137"/>
          </intron>
          <exon e_serial="4" e_score="0.993">
            <gDNA_exon_boundary e_start="68826" e_stop="68677" e_length="150"/>
          </exon>
          <intron i_serial="4" don_prob="0.429" acc_prob="0.998">
            <gDNA_intron_boundary i_start="68676" i_stop="68131" i_length="546"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="68130" e_stop="67968" e_length="163"/>
          </exon>
          <intron i_serial="5" don_prob="0.146" acc_prob="0.942">
            <gDNA_intron_boundary i_start="67967" i_stop="67654" i_length="314"/>
          </intron>
          <exon e_serial="6" e_score="0.975">
            <gDNA_exon_boundary e_start="67653" e_stop="67492" e_length="162"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71468" stop="71228"/>
              <exon start="69361" stop="69226"/>
              <exon start="69051" stop="68964"/>
              <exon start="68826" stop="68677"/>
              <exon start="68130" stop="67968"/>
              <exon start="67653" stop="67594"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738400" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68130" stop="67968"/>
              <exon start="67653" stop="67492"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E422421" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68130" stop="67968"/>
              <exon start="67653" stop="67492"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E422420" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68130" stop="67968"/>
              <exon start="67653" stop="67492"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448343" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACACACTCCAATTTTTCGCTGTCTCTGTCTGCAACTTCTATTCATCCTTTCTTCTCTCTCTTTATATACATAAACTCTAGAAGAAGTCCTTTCTTCTAGGGTTCATACAATCATTTGTTTTCATTATCCTTTTTGCTGAAAGTTGAAGTTATGGATTTTCAGAACCTTGCTGTCATACTTGCAGGTGCTCTAAGTCCGAATCCGGATGAACGGAAAGCTGCTGAGAACAGTCTCAATCAG : TTTCAGCATACCCCACAACATCTTGTGAGACTGCTGCAAATCATAGTAGATGGGTCCTGTGACATGGCAGTCCGACAGGTGGCTAGTATCCATTTTAAGAACTTTGTTGCAAAGAACTGGTGCCCTCATGATCCTG : CTGAGCAATCAAAAATTATGCCAAGTGACAAGGAATTGGTGAGGCAAAATATTCTCATATTTATTGCACAGGTTCCTTCATTGTTGAG : GGTACAGTTGGGGGAATGCATTAAAACAATGATACATGCAGACTACCCGGAGCAGTGGCCAACTCTTCTGCCTTGGATAAAGCATAATCTGCAGGATCAGCAAGTATATGGTGCTTTGTTTGTTCTGAGAATACTCTCGAGGAAATATGA : ATTCAAATCAGACGAGGAGAGAACACCTGTTTATCATGTCGTTGAGGAAACTTTTCCACATCTTCTCAACATATTCAACAAACTTGTTCAGATAACAAATCCGTCAATTGAAGTAGCCGACCTGATCAAGCTCATTTGCAAAATATTCTGGTCATCCATTTAT : TTGGAGATTCCGAAGCAGTTGTTTGACCCAAATGTGTTCAATGCCTGGATGGTTCTTTTCTTGAACATGTTGGAGAGGCCTGTCCCTGTGGAAGGCCAACCAGCTGATCCAGAGCTAAGAAAGTCGTGGGGTTGGTGGAAGGTGAAAAAGTGGACAGTCCAT</gDNA_template>
            <first_frame> H  T  L  Q  F  F  A  V  S  V  C  N  F  Y  S  S  F  L  L  S  L  Y  I  H  K  L  *  K  K  S  F  L  L  G  F  I  Q  S  F  V  F  I  I  L  F  A  E  S  *  S  Y  G  F  S  E  P  C  C  H  T  C  R  C  S  K  S  E  S  G  *  T  E  S  C  *  E  Q  S  Q  S   : V  S  A  Y  P  T  T  S  C  E  T  A  A  N  H  S  R  W  V  L  *  H  G  S  P  T  G  G  *  Y  P  F  *  E  L  C  C  K  E  L  V  P  S  *  S  C :   *  A  I  K  N  Y  A  K  *  Q  G  I  G  E  A  K  Y  S  H  I  Y  C  T  G  S  F  I  V  E  :  G  T  V  G  G  M  H  *  N  N  D  T  C  R  L  P  G  A  V  A  N  S  S  A  L  D  K  A  *  S  A  G  S  A  S  I  W  C  F  V  C  S  E  N  T  L  E  E  I  *  :  I  Q  I  R  R  G  E  N  T  C  L  S  C  R  *  G  N  F  S  T  S  S  Q  H  I  Q  Q  T  C  S  D  N  K  S  V  N  *  S  S  R  P  D  Q  A  H  L  Q  N  I  L  V  I  H  L   : F  G  D  S  E  A  V  V  *  P  K  C  V  Q  C  L  D  G  S  F  L  E  H  V  G  E  A  C  P  C  G  R  P  T  S  *  S  R  A  K  K  V  V  G  L  V  E  G  E  K  V  D  S  P  </first_frame>
            <second_frame>  T  H  S  N  F  S  L  S  L  S  A  T  S  I  H  P  F  F  S  L  F  I  Y  I  N  S  R  R  S  P  F  F  *  G  S  Y  N  H  L  F  S  L  S  F  L  L  K  V  E  V  M  D  F  Q  N  L  A  V  I  L  A  G  A  L  S  P  N  P  D  E  R  K  A  A  E  N  S  L  N  Q  :  F  Q  H  T  P  Q  H  L  V  R  L  L  Q  I  I  V  D  G  S  C  D  M  A  V  R  Q  V  A  S  I  H  F  K  N  F  V  A  K  N  W  C  P  H  D  P   : A  E  Q  S  K  I  M  P  S  D  K  E  L  V  R  Q  N  I  L  I  F  I  A  Q  V  P  S  L  L  R :   V  Q  L  G  E  C  I  K  T  M  I  H  A  D  Y  P  E  Q  W  P  T  L  L  P  W  I  K  H  N  L  Q  D  Q  Q  V  Y  G  A  L  F  V  L  R  I  L  S  R  K  Y  E :   F  K  S  D  E  E  R  T  P  V  Y  H  V  V  E  E  T  F  P  H  L  L  N  I  F  N  K  L  V  Q  I  T  N  P  S  I  E  V  A  D  L  I  K  L  I  C  K  I  F  W  S  S  I  Y  :  L  E  I  P  K  Q  L  F  D  P  N  V  F  N  A  W  M  V  L  F  L  N  M  L  E  R  P  V  P  V  E  G  Q  P  A  D  P  E  L  R  K  S  W  G  W  W  K  V  K  K  W  T  V  H </second_frame>
            <third_frame>   H  T  P  I  F  R  C  L  C  L  Q  L  L  F  I  L  S  S  L  S  L  Y  T  *  T  L  E  E  V  L  S  S  R  V  H  T  I  I  C  F  H  Y  P  F  C  *  K  L  K  L  W  I  F  R  T  L  L  S  Y  L  Q  V  L  *  V  R  I  R  M  N  G  K  L  L  R  T  V  S  I  S :   F  S  I  P  H  N  I  L  *  D  C  C  K  S  *  *  M  G  P  V  T  W  Q  S  D  R  W  L  V  S  I  L  R  T  L  L  Q  R  T  G  A  L  M  I  L  :  L  S  N  Q  K  L  C  Q  V  T  R  N  W  *  G  K  I  F  S  Y  L  L  H  R  F  L  H  C  *   : G  Y  S  W  G  N  A  L  K  Q  *  Y  M  Q  T  T  R  S  S  G  Q  L  F  C  L  G  *  S  I  I  C  R  I  S  K  Y  M  V  L  C  L  F  *  E  Y  S  R  G  N  M   : N  S  N  Q  T  R  R  E  H  L  F  I  M  S  L  R  K  L  F  H  I  F  S  T  Y  S  T  N  L  F  R  *  Q  I  R  Q  L  K  *  P  T  *  S  S  S  F  A  K  Y  S  G  H  P  F  I :   W  R  F  R  S  S  C  L  T  Q  M  C  S  M  P  G  W  F  F  S  *  T  C  W  R  G  L  S  L  W  K  A  N  Q  L  I  Q  S  *  E  S  R  G  V  G  G  R  *  K  S  G  Q  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0059I05.3" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71368" stop="71228"/>
                    <exon start="69361" stop="69226"/>
                    <exon start="69051" stop="68964"/>
                    <exon start="68826" stop="68677"/>
                    <exon start="68130" stop="67968"/>
                    <exon start="67653" stop="67492"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>840</number_coding_nucleotides>
                  <number_encoded_amino_acids>280</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GSYNHLFSLSFLLKVEVMDFQNLAVILAGALSPNPDERKAAENSLNQFQHTPQHLVRLLQIIVDGSCDMAVRQVASIHFKNFVAKNWCPHDPAEQSKIMPSDKELVRQNILIFIAQVPSLLRVQLGECIKTMIHADYPEQWPTLLPWIKHNLQDQQVYGALFVLRILSRKYEFKSDEERTPVYHVVEETFPHLLNIFNKLVQITNPSIEVADLIKLICKIFWSSIYLEIPKQLFDPNVFNAWMVLFLNMLERPVPVEGQPADPELRKSWGWWKVKKWTVH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="81198" PGL_stop="91075"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="81198" e_stop="81262"/>
            <exon e_start="81478" e_stop="81570"/>
            <exon e_start="81656" e_stop="81753"/>
            <exon e_start="88698" e_stop="88868"/>
            <exon e_start="90685" e_stop="90822"/>
            <exon e_start="91031" e_stop="91075"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.613" acc_prob="0.929" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.738" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.779" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.859" e_score="0.993"/>
          <exon-only e_score="0.978"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="81198" e_stop="81262" e_length="65"/>
          </exon>
          <intron i_serial="1" don_prob="0.613" acc_prob="0.929">
            <gDNA_intron_boundary i_start="81263" i_stop="81477" i_length="215"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="81478" e_stop="81570" e_length="93"/>
          </exon>
          <intron i_serial="2" don_prob="0.969" acc_prob="0.738">
            <gDNA_intron_boundary i_start="81571" i_stop="81655" i_length="85"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="81656" e_stop="81753" e_length="98"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="0.964">
            <gDNA_intron_boundary i_start="81754" i_stop="88697" i_length="6944"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="88698" e_stop="88868" e_length="171"/>
          </exon>
          <intron i_serial="4" don_prob="0.992" acc_prob="0.779">
            <gDNA_intron_boundary i_start="88869" i_stop="90684" i_length="1816"/>
          </intron>
          <exon e_serial="5" e_score="0.993">
            <gDNA_exon_boundary e_start="90685" e_stop="90822" e_length="138"/>
          </exon>
          <intron i_serial="5" don_prob="0.965" acc_prob="0.859">
            <gDNA_intron_boundary i_start="90823" i_stop="91030" i_length="208"/>
          </intron>
          <exon e_serial="6" e_score="0.978">
            <gDNA_exon_boundary e_start="91031" e_stop="91075" e_length="45"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81198" stop="81262"/>
              <exon start="81478" stop="81570"/>
              <exon start="81656" stop="81753"/>
              <exon start="88698" stop="88868"/>
              <exon start="90685" stop="90822"/>
              <exon start="91031" stop="91075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315588" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAAAAGCTTGAAGAAGTCAGAAGTTGCCCACTTGAATTGGGGGACTTGAAAATAGTTAGCCTTG : GAAAAATAGTAGAAGATTCGGAGCTCTTTCGAGATGAGGAATTTATCTGGCCAGAAGGTTATACTGCTGTGAGGAAGTTGCCATCAGTAACAG : ATCCCAGTGTACGTGTATCATATAAGATGGAGGTACTGAGAGATCCTGATTTCCGGACACGACCTTTATTTAGAGTTACATCGGATAGTCGAGAACAG : TTTAAGGGATCTTCACCATCTGCTTGCTGGAATAAAGTTTACAAACAGATGAGGAAGACACAAGTTGACAATTTTGATGAATCAATATCTAGCCGTAAAAGTGAAAGGACCTTTGGATCAGGTTCTCATATGTTTGGCTTTTCTCATCCTGAAATTTCGAAACTTATAAAG : GAGTTATCAAAGTCCAAGATTCTTGCAAAATCCTTGAAATTGGCGTCTTCAAAAAATCAAGACTTGCCGGCTGGTTATAGGTCTGTCCGTGTTAAATGGAAAGATCTGGACAAATGCAACGTTTGCCATATGGATGAG : GAGTATGAGAATAATTTGTTTTTGCAGTGTGACAAATGCCGAATG</gDNA_template>
            <first_frame> E  K  A  *  R  S  Q  K  L  P  T  *  I  G  G  L  E  N  S  *  P  W :   K  N  S  R  R  F  G  A  L  S  R  *  G  I  Y  L  A  R  R  L  Y  C  C  E  E  V  A  I  S  N  R :   S  Q  C  T  C  I  I  *  D  G  G  T  E  R  S  *  F  P  D  T  T  F  I  *  S  Y  I  G  *  S  R  T   : V  *  G  I  F  T  I  C  L  L  E  *  S  L  Q  T  D  E  E  D  T  S  *  Q  F  *  *  I  N  I  *  P  *  K  *  K  D  L  W  I  R  F  S  Y  V  W  L  F  S  S  *  N  F  E  T  Y  K   : G  V  I  K  V  Q  D  S  C  K  I  L  E  I  G  V  F  K  K  S  R  L  A  G  W  L  *  V  C  P  C  *  M  E  R  S  G  Q  M  Q  R  L  P  Y  G  *   : G  V  *  E  *  F  V  F  A  V  *  Q  M  P  N  </first_frame>
            <second_frame>  K  K  L  E  E  V  R  S  C  P  L  E  L  G  D  L  K  I  V  S  L   : G  K  I  V  E  D  S  E  L  F  R  D  E  E  F  I  W  P  E  G  Y  T  A  V  R  K  L  P  S  V  T   : D  P  S  V  R  V  S  Y  K  M  E  V  L  R  D  P  D  F  R  T  R  P  L  F  R  V  T  S  D  S  R  E  Q  :  F  K  G  S  S  P  S  A  C  W  N  K  V  Y  K  Q  M  R  K  T  Q  V  D  N  F  D  E  S  I  S  S  R  K  S  E  R  T  F  G  S  G  S  H  M  F  G  F  S  H  P  E  I  S  K  L  I  K  :  E  L  S  K  S  K  I  L  A  K  S  L  K  L  A  S  S  K  N  Q  D  L  P  A  G  Y  R  S  V  R  V  K  W  K  D  L  D  K  C  N  V  C  H  M  D  E  :  E  Y  E  N  N  L  F  L  Q  C  D  K  C  R  M </second_frame>
            <third_frame>   K  S  L  K  K  S  E  V  A  H  L  N  W  G  T  *  K  *  L  A  L  :  E  K  *  *  K  I  R  S  S  F  E  M  R  N  L  S  G  Q  K  V  I  L  L  *  G  S  C  H  Q  *  Q  :  I  P  V  Y  V  Y  H  I  R  W  R  Y  *  E  I  L  I  S  G  H  D  L  Y  L  E  L  H  R  I  V  E  N  S :   L  R  D  L  H  H  L  L  A  G  I  K  F  T  N  R  *  G  R  H  K  L  T  I  L  M  N  Q  Y  L  A  V  K  V  K  G  P  L  D  Q  V  L  I  C  L  A  F  L  I  L  K  F  R  N  L  *  R :   S  Y  Q  S  P  R  F  L  Q  N  P  *  N  W  R  L  Q  K  I  K  T  C  R  L  V  I  G  L  S  V  L  N  G  K  I  W  T  N  A  T  F  A  I  W  M  R :   S  M  R  I  I  C  F  C  S  V  T  N  A  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0059I05.3" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81199" stop="81262"/>
                    <exon start="81478" stop="81570"/>
                    <exon start="81656" stop="81753"/>
                    <exon start="88698" stop="88868"/>
                    <exon start="90685" stop="90822"/>
                    <exon start="91031" stop="91075"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>609</number_coding_nucleotides>
                  <number_encoded_amino_acids>203</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKLEEVRSCPLELGDLKIVSLGKIVEDSELFRDEEFIWPEGYTAVRKLPSVTDPSVRVSYKMEVLRDPDFRTRPLFRVTSDSREQFKGSSPSACWNKVYKQMRKTQVDNFDESISSRKSERTFGSGSHMFGFSHPEISKLIKELSKSKILAKSLKLASSKNQDLPAGYRSVRVKWKDLDKCNVCHMDEEYENNLFLQCDKCRM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="118292" PGL_stop="118625"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="118292" e_stop="118389"/>
            <exon e_start="118504" e_stop="118625"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="0.959"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="118292" e_stop="118389" e_length="98"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.994">
            <gDNA_intron_boundary i_start="118390" i_stop="118503" i_length="114"/>
          </intron>
          <exon e_serial="2" e_score="0.959">
            <gDNA_exon_boundary e_start="118504" e_stop="118625" e_length="122"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118292" stop="118389"/>
              <exon start="118504" stop="118625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336167" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAACAGTTCGATTTCAAAATGTACAAATGGAAGATGTTTCAAATCCAATCATTATAGATCAATTCTACTGCGACTCACAAAAACCTTGTCAAAATCAG : ACATCTGCAGTTGAGATAAGTGAAGTACTCTATCGTAACGTTAGTGGAACAACAAAGAGCAAAAAGGCAATGAAATTCGCGTGTAGTGACACTGTGCCTTGTAGCCATATTACTCTGGACAA</gDNA_template>
            <first_frame> E  Q  F  D  F  K  M  Y  K  W  K  M  F  Q  I  Q  S  L  *  I  N  S  T  A  T  H  K  N  L  V  K  I  R :   H  L  Q  L  R  *  V  K  Y  S  I  V  T  L  V  E  Q  Q  R  A  K  R  Q  *  N  S  R  V  V  T  L  C  L  V  A  I  L  L  W  T  </first_frame>
            <second_frame>  N  S  S  I  S  K  C  T  N  G  R  C  F  K  S  N  H  Y  R  S  I  L  L  R  L  T  K  T  L  S  K  S   : D  I  C  S  *  D  K  *  S  T  L  S  *  R  *  W  N  N  K  E  Q  K  G  N  E  I  R  V  *  *  H  C  A  L  *  P  Y  Y  S  G  Q </second_frame>
            <third_frame>   T  V  R  F  Q  N  V  Q  M  E  D  V  S  N  P  I  I  I  D  Q  F  Y  C  D  S  Q  K  P  C  Q  N  Q  :  T  S  A  V  E  I  S  E  V  L  Y  R  N  V  S  G  T  T  K  S  K  K  A  M  K  F  A  C  S  D  T  V  P  C  S  H  I  T  L  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0059I05.3" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="118294" stop="118389"/>
                    <exon start="118504" stop="118623"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TVRFQNVQMEDVSNPIIIDQFYCDSQKPCQNQTSAVEISEVLYRNVSGTTKSKKAMKFACSDTVPCSHITLD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="119566" PGL_stop="125460"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="119566" e_stop="119704"/>
            <exon e_start="119800" e_stop="119882"/>
            <exon e_start="121394" e_stop="121510"/>
            <exon e_start="121599" e_stop="121702"/>
            <exon e_start="122261" e_stop="122327"/>
            <exon e_start="123523" e_stop="123656"/>
            <exon e_start="123772" e_stop="123820"/>
            <exon e_start="124256" e_stop="124327"/>
            <exon e_start="124413" e_stop="124514"/>
            <exon e_start="124595" e_stop="124662"/>
            <exon e_start="124851" e_stop="125003"/>
            <exon e_start="125112" e_stop="125460"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.964" acc_prob="0.975" e_score="0.932"/>
          <exon-intron don_prob="1.000" acc_prob="0.610" e_score="1.000"/>
          <exon-intron don_prob="0.838" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.949" acc_prob="0.999" e_score="0.993"/>
          <exon-intron don_prob="0.938" acc_prob="0.780" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.869" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.899" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.932">
            <gDNA_exon_boundary e_start="119566" e_stop="119704" e_length="139"/>
          </exon>
          <intron i_serial="1" don_prob="0.964" acc_prob="0.975">
            <gDNA_intron_boundary i_start="119705" i_stop="119799" i_length="95"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="119800" e_stop="119882" e_length="83"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.610">
            <gDNA_intron_boundary i_start="119883" i_stop="121393" i_length="1511"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="121394" e_stop="121510" e_length="117"/>
          </exon>
          <intron i_serial="3" don_prob="0.838" acc_prob="0.997">
            <gDNA_intron_boundary i_start="121511" i_stop="121598" i_length="88"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="121599" e_stop="121702" e_length="104"/>
          </exon>
          <intron i_serial="4" don_prob="0.962" acc_prob="0.997">
            <gDNA_intron_boundary i_start="121703" i_stop="122260" i_length="558"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="122261" e_stop="122327" e_length="67"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="0.990">
            <gDNA_intron_boundary i_start="122328" i_stop="123522" i_length="1195"/>
          </intron>
          <exon e_serial="6" e_score="0.993">
            <gDNA_exon_boundary e_start="123523" e_stop="123656" e_length="134"/>
          </exon>
          <intron i_serial="6" don_prob="0.949" acc_prob="0.999">
            <gDNA_intron_boundary i_start="123657" i_stop="123771" i_length="115"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="123772" e_stop="123820" e_length="49"/>
          </exon>
          <intron i_serial="7" don_prob="0.938" acc_prob="0.780">
            <gDNA_intron_boundary i_start="123821" i_stop="124255" i_length="435"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="124256" e_stop="124327" e_length="72"/>
          </exon>
          <intron i_serial="8" don_prob="0.998" acc_prob="0.869">
            <gDNA_intron_boundary i_start="124328" i_stop="124412" i_length="85"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="124413" e_stop="124514" e_length="102"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="0.993">
            <gDNA_intron_boundary i_start="124515" i_stop="124594" i_length="80"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="124595" e_stop="124662" e_length="68"/>
          </exon>
          <intron i_serial="10" don_prob="0.987" acc_prob="0.999">
            <gDNA_intron_boundary i_start="124663" i_stop="124850" i_length="188"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="124851" e_stop="125003" e_length="153"/>
          </exon>
          <intron i_serial="11" don_prob="0.899" acc_prob="1.000">
            <gDNA_intron_boundary i_start="125004" i_stop="125111" i_length="108"/>
          </intron>
          <exon e_serial="12" e_score="0.994">
            <gDNA_exon_boundary e_start="125112" e_stop="125460" e_length="349"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119566" stop="119704"/>
              <exon start="119800" stop="119882"/>
              <exon start="121394" stop="121510"/>
              <exon start="121599" stop="121692"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E468775" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119572" stop="119704"/>
              <exon start="119800" stop="119882"/>
              <exon start="121394" stop="121510"/>
              <exon start="121599" stop="121702"/>
              <exon start="122261" stop="122327"/>
              <exon start="123523" stop="123656"/>
              <exon start="123772" stop="123820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570892" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119598" stop="119704"/>
              <exon start="119800" stop="119882"/>
              <exon start="121394" stop="121510"/>
              <exon start="121599" stop="121702"/>
              <exon start="122261" stop="122327"/>
              <exon start="123523" stop="123656"/>
              <exon start="123772" stop="123820"/>
              <exon start="124256" stop="124308"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343254" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119609" stop="119704"/>
              <exon start="119800" stop="119882"/>
              <exon start="121394" stop="121510"/>
              <exon start="121599" stop="121702"/>
              <exon start="122261" stop="122327"/>
              <exon start="123523" stop="123627"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317283" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119610" stop="119704"/>
              <exon start="119800" stop="119882"/>
              <exon start="121394" stop="121492"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440266" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119611" stop="119704"/>
              <exon start="119800" stop="119882"/>
              <exon start="121394" stop="121510"/>
              <exon start="121599" stop="121702"/>
              <exon start="122261" stop="122327"/>
              <exon start="123523" stop="123564"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E482958" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119611" stop="119704"/>
              <exon start="119800" stop="119882"/>
              <exon start="121394" stop="121510"/>
              <exon start="121599" stop="121702"/>
              <exon start="122261" stop="122327"/>
              <exon start="123523" stop="123554"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E482957" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119613" stop="119704"/>
              <exon start="119800" stop="119882"/>
              <exon start="121394" stop="121510"/>
              <exon start="121599" stop="121702"/>
              <exon start="122261" stop="122327"/>
              <exon start="123523" stop="123656"/>
              <exon start="123772" stop="123820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E568761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119615" stop="119704"/>
              <exon start="119800" stop="119882"/>
              <exon start="121394" stop="121510"/>
              <exon start="121599" stop="121702"/>
              <exon start="122261" stop="122327"/>
              <exon start="123523" stop="123656"/>
              <exon start="123772" stop="123820"/>
              <exon start="124256" stop="124323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E601376" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119615" stop="119704"/>
              <exon start="119800" stop="119882"/>
              <exon start="121394" stop="121510"/>
              <exon start="121599" stop="121702"/>
              <exon start="122261" stop="122327"/>
              <exon start="123523" stop="123656"/>
              <exon start="123772" stop="123820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560398" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119618" stop="119704"/>
              <exon start="119800" stop="119882"/>
              <exon start="121394" stop="121510"/>
              <exon start="121599" stop="121689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119621" stop="119704"/>
              <exon start="119800" stop="119882"/>
              <exon start="121394" stop="121510"/>
              <exon start="121599" stop="121702"/>
              <exon start="122261" stop="122327"/>
              <exon start="123523" stop="123656"/>
              <exon start="123772" stop="123820"/>
              <exon start="124256" stop="124323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448598" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119631" stop="119704"/>
              <exon start="119800" stop="119882"/>
              <exon start="121394" stop="121510"/>
              <exon start="121599" stop="121702"/>
              <exon start="122261" stop="122289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E471597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119632" stop="119704"/>
              <exon start="119800" stop="119882"/>
              <exon start="121394" stop="121510"/>
              <exon start="121599" stop="121702"/>
              <exon start="122261" stop="122327"/>
              <exon start="123523" stop="123558"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255062" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119642" stop="119704"/>
              <exon start="119800" stop="119882"/>
              <exon start="121394" stop="121510"/>
              <exon start="121599" stop="121702"/>
              <exon start="122261" stop="122327"/>
              <exon start="123523" stop="123619"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475050" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121448" stop="121510"/>
              <exon start="121599" stop="121702"/>
              <exon start="122261" stop="122327"/>
              <exon start="123523" stop="123656"/>
              <exon start="123772" stop="123820"/>
              <exon start="124256" stop="124327"/>
              <exon start="124413" stop="124514"/>
              <exon start="124595" stop="124662"/>
              <exon start="124851" stop="125003"/>
              <exon start="125112" stop="125147"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705681" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121680" stop="121702"/>
              <exon start="122261" stop="122327"/>
              <exon start="123523" stop="123656"/>
              <exon start="123772" stop="123820"/>
              <exon start="124256" stop="124327"/>
              <exon start="124413" stop="124514"/>
              <exon start="124595" stop="124662"/>
              <exon start="124851" stop="124917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E611186" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122272" stop="122327"/>
              <exon start="123523" stop="123656"/>
              <exon start="123772" stop="123820"/>
              <exon start="124256" stop="124327"/>
              <exon start="124413" stop="124514"/>
              <exon start="124595" stop="124662"/>
              <exon start="124851" stop="124875"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E581588" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122290" stop="122327"/>
              <exon start="123523" stop="123656"/>
              <exon start="123772" stop="123820"/>
              <exon start="124256" stop="124327"/>
              <exon start="124413" stop="124514"/>
              <exon start="124595" stop="124662"/>
              <exon start="124851" stop="125003"/>
              <exon start="125112" stop="125304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727526" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122294" stop="122327"/>
              <exon start="123523" stop="123656"/>
              <exon start="123772" stop="123820"/>
              <exon start="124256" stop="124327"/>
              <exon start="124413" stop="124514"/>
              <exon start="124595" stop="124662"/>
              <exon start="124851" stop="125003"/>
              <exon start="125112" stop="125180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E581589" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123610" stop="123656"/>
              <exon start="123772" stop="123820"/>
              <exon start="124256" stop="124327"/>
              <exon start="124413" stop="124514"/>
              <exon start="124595" stop="124662"/>
              <exon start="124851" stop="125003"/>
              <exon start="125112" stop="125460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123610" stop="123656"/>
              <exon start="123772" stop="123820"/>
              <exon start="124256" stop="124327"/>
              <exon start="124413" stop="124514"/>
              <exon start="124595" stop="124662"/>
              <exon start="124851" stop="125003"/>
              <exon start="125112" stop="125460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692367" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123643" stop="123656"/>
              <exon start="123772" stop="123820"/>
              <exon start="124256" stop="124327"/>
              <exon start="124413" stop="124514"/>
              <exon start="124595" stop="124662"/>
              <exon start="124851" stop="125003"/>
              <exon start="125112" stop="125176"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243251" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124309" stop="124327"/>
              <exon start="124413" stop="124514"/>
              <exon start="124595" stop="124662"/>
              <exon start="124851" stop="125003"/>
              <exon start="125112" stop="125363"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560217" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124314" stop="124327"/>
              <exon start="124413" stop="124514"/>
              <exon start="124595" stop="124662"/>
              <exon start="124851" stop="125003"/>
              <exon start="125112" stop="125437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E421248" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124319" stop="124327"/>
              <exon start="124413" stop="124514"/>
              <exon start="124595" stop="124662"/>
              <exon start="124851" stop="125003"/>
              <exon start="125112" stop="125460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452960" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124616" stop="124662"/>
              <exon start="124851" stop="125003"/>
              <exon start="125112" stop="125412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E598422" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124902" stop="125003"/>
              <exon start="125112" stop="125460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553967" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124902" stop="125003"/>
              <exon start="125112" stop="125460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553141" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125128" stop="125460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238812" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTCGTCTCGTCTCCTCATTTTGTTCCTCCAGCAATTAGGGTTTTGGATTTTGGATTTGCTTCTTGTGGAATTGCTCCGAAGTCGAGAAGCTTCGGATTCAGTCAATTTTCTGCTCAATTTCTATCATCATGGCAAATC : CTACAGGACGGTCGTTTTTGCAAGTGGCAGCTACAGAGGAGGCTGTTGCGCCACCACTCAGAGTTGTTCAGATTGAAGGACTG : GTTATTTTGAAAATAATCAAGCATTGCCAAGAGTTTTCACCGGCTTTGGTCACTGGACAACTCCTTGGATTGGATGTTGGAAGTGTTCTTGAAGTCACTAACTGTTTTCCTTTTCCG : GTTCGCGAGGAAGATGAGGAGATTGAAGCCGAGGGTGCTAATTATCAACTTGAAATGATGCGATGCCTGAGGGAGGTTAATGTTGACAACAACACCGTTGGTTG : GTATCAATCAACTTTGTTTGGTTCATATCAGACAGTGGAACTGATAGAGACCTTCATGAATTACCAG : GAGAATATAAAACGTTGTGTCTGCATAATCTATGATCCTTCTAGATCCAACCAAGGTGTCTTAGCTTTGAAAGCCTTGAAGCTTTCTGATTCTTTCATGGAACTCTACAAGAGTAACAACTTTACTGGAGAGAA : GCTGAGAGAAAAGAATCTTTCATGGGTTGACATCTTTGAAGAGATACCA : ATAAAAGTTTCAAATTCTGCACTCATTAGTGCCTTTATGACTGAATTGGAACCCGATACACCTGTAACTCAG : TGTGATTATGAACGCTTACAATTATCAACCAATCCATATTTGGAGAGGAATGTGGAATTTTTGATTGAATGCATGGATGACTTGTCGATGGAGCAGCAAAAG : TTCCAATTCTATTACCGGAATCTTTCTCGTCAACAAGCTCAGCAGCAAGCTTGGCTTCAGAAGAGGAG : GACTGAGAACATGGCACGTAAAGCTGCAGGAGAAGAGCTACTGCCAGAAGAGGATCCCTCTAATCCTGTCTTTAAGCCACTCCCAGAGCCCTCACGGTTGGATAGCTTTCTCATAACTAATCAAATTTCAAATTACTGCAACCAGATTAATGG : AGTTGCGGGACAAAGCCTCAGTAGACTACATCTGATGAAGGCTTTGCACGAGAACTGAGCAAGTTTTGCGTTGGCAATTTGTACCTTAGATTTTTGTGCCTTTTTTTTCAACTTTACTGATGTGAGAGGGAAAGAGAATGACCTTTATCTCTGTTAGGTGTCTTTAGTTTTTGCTTTTACATTCTTCTATGATTGGCAATCAAGTGTAGCCTACCTTGAATCATATATGTGAAGATTTACATCTAGTCCACAGAGAAGGAATAGGGATCTATGTATCGATGACCTTATTGTTTTTTGATCGATTGTGTGGAAATGGAAGATTAAAAATCTCTCAATTACCCTCATTAAT</gDNA_template>
            <first_frame> F  R  L  V  S  S  F  C  S  S  S  N  *  G  F  G  F  W  I  C  F  L  W  N  C  S  E  V  E  K  L  R  I  Q  S  I  F  C  S  I  S  I  I  M  A  N   : P  T  G  R  S  F  L  Q  V  A  A  T  E  E  A  V  A  P  P  L  R  V  V  Q  I  E  G  L  :  V  I  L  K  I  I  K  H  C  Q  E  F  S  P  A  L  V  T  G  Q  L  L  G  L  D  V  G  S  V  L  E  V  T  N  C  F  P  F  P  :  V  R  E  E  D  E  E  I  E  A  E  G  A  N  Y  Q  L  E  M  M  R  C  L  R  E  V  N  V  D  N  N  T  V  G  W :   Y  Q  S  T  L  F  G  S  Y  Q  T  V  E  L  I  E  T  F  M  N  Y  Q  :  E  N  I  K  R  C  V  C  I  I  Y  D  P  S  R  S  N  Q  G  V  L  A  L  K  A  L  K  L  S  D  S  F  M  E  L  Y  K  S  N  N  F  T  G  E  K :   L  R  E  K  N  L  S  W  V  D  I  F  E  E  I  P  :  I  K  V  S  N  S  A  L  I  S  A  F  M  T  E  L  E  P  D  T  P  V  T  Q  :  C  D  Y  E  R  L  Q  L  S  T  N  P  Y  L  E  R  N  V  E  F  L  I  E  C  M  D  D  L  S  M  E  Q  Q  K  :  F  Q  F  Y  Y  R  N  L  S  R  Q  Q  A  Q  Q  Q  A  W  L  Q  K  R  R :   T  E  N  M  A  R  K  A  A  G  E  E  L  L  P  E  E  D  P  S  N  P  V  F  K  P  L  P  E  P  S  R  L  D  S  F  L  I  T  N  Q  I  S  N  Y  C  N  Q  I  N  G :   V  A  G  Q  S  L  S  R  L  H  L  M  K  A  L  H  E  N  *  A  S  F  A  L  A  I  C  T  L  D  F  C  A  F  F  F  N  F  T  D  V  R  G  K  E  N  D  L  Y  L  C  *  V  S  L  V  F  A  F  T  F  F  Y  D  W  Q  S  S  V  A  Y  L  E  S  Y  M  *  R  F  T  S  S  P  Q  R  R  N  R  D  L  C  I  D  D  L  I  V  F  *  S  I  V  W  K  W  K  I  K  N  L  S  I  T  L  I  N </first_frame>
            <second_frame>  F  V  S  S  P  H  F  V  P  P  A  I  R  V  L  D  F  G  F  A  S  C  G  I  A  P  K  S  R  S  F  G  F  S  Q  F  S  A  Q  F  L  S  S  W  Q  I  :  L  Q  D  G  R  F  C  K  W  Q  L  Q  R  R  L  L  R  H  H  S  E  L  F  R  L  K  D  W :   L  F  *  K  *  S  S  I  A  K  S  F  H  R  L  W  S  L  D  N  S  L  D  W  M  L  E  V  F  L  K  S  L  T  V  F  L  F  R :   F  A  R  K  M  R  R  L  K  P  R  V  L  I  I  N  L  K  *  C  D  A  *  G  R  L  M  L  T  T  T  P  L  V   : G  I  N  Q  L  C  L  V  H  I  R  Q  W  N  *  *  R  P  S  *  I  T  R :   R  I  *  N  V  V  S  A  *  S  M  I  L  L  D  P  T  K  V  S  *  L  *  K  P  *  S  F  L  I  L  S  W  N  S  T  R  V  T  T  L  L  E  R   : S  *  E  K  R  I  F  H  G  L  T  S  L  K  R  Y  Q :   *  K  F  Q  I  L  H  S  L  V  P  L  *  L  N  W  N  P  I  H  L  *  L  S :   V  I  M  N  A  Y  N  Y  Q  P  I  H  I  W  R  G  M  W  N  F  *  L  N  A  W  M  T  C  R  W  S  S  K  S :   S  N  S  I  T  G  I  F  L  V  N  K  L  S  S  K  L  G  F  R  R  G   : G  L  R  T  W  H  V  K  L  Q  E  K  S  Y  C  Q  K  R  I  P  L  I  L  S  L  S  H  S  Q  S  P  H  G  W  I  A  F  S  *  L  I  K  F  Q  I  T  A  T  R  L  M   : E  L  R  D  K  A  S  V  D  Y  I  *  *  R  L  C  T  R  T  E  Q  V  L  R  W  Q  F  V  P  *  I  F  V  P  F  F  S  T  L  L  M  *  E  G  K  R  M  T  F  I  S  V  R  C  L  *  F  L  L  L  H  S  S  M  I  G  N  Q  V  *  P  T  L  N  H  I  C  E  D  L  H  L  V  H  R  E  G  I  G  I  Y  V  S  M  T  L  L  F  F  D  R  L  C  G  N  G  R  L  K  I  S  Q  L  P  S  L   </second_frame>
            <third_frame>   S  S  R  L  L  I  L  F  L  Q  Q  L  G  F  W  I  L  D  L  L  L  V  E  L  L  R  S  R  E  A  S  D  S  V  N  F  L  L  N  F  Y  H  H  G  K  S :   Y  R  T  V  V  F  A  S  G  S  Y  R  G  G  C  C  A  T  T  Q  S  C  S  D  *  R  T   : G  Y  F  E  N  N  Q  A  L  P  R  V  F  T  G  F  G  H  W  T  T  P  W  I  G  C  W  K  C  S  *  S  H  *  L  F  S  F  S   : G  S  R  G  R  *  G  D  *  S  R  G  C  *  L  S  T  *  N  D  A  M  P  E  G  G  *  C  *  Q  Q  H  R  W  L  :  V  S  I  N  F  V  W  F  I  S  D  S  G  T  D  R  D  L  H  E  L  P   : G  E  Y  K  T  L  C  L  H  N  L  *  S  F  *  I  Q  P  R  C  L  S  F  E  S  L  E  A  F  *  F  F  H  G  T  L  Q  E  *  Q  L  Y  W  R  E  :  A  E  R  K  E  S  F  M  G  *  H  L  *  R  D  T   : N  K  S  F  K  F  C  T  H  *  C  L  Y  D  *  I  G  T  R  Y  T  C  N  S   : V  *  L  *  T  L  T  I  I  N  Q  S  I  F  G  E  E  C  G  I  F  D  *  M  H  G  *  L  V  D  G  A  A  K   : V  P  I  L  L  P  E  S  F  S  S  T  S  S  A  A  S  L  A  S  E  E  E  :  D  *  E  H  G  T  *  S  C  R  R  R  A  T  A  R  R  G  S  L  *  S  C  L  *  A  T  P  R  A  L  T  V  G  *  L  S  H  N  *  S  N  F  K  L  L  Q  P  D  *  W  :  S  C  G  T  K  P  Q  *  T  T  S  D  E  G  F  A  R  E  L  S  K  F  C  V  G  N  L  Y  L  R  F  L  C  L  F  F  Q  L  Y  *  C  E  R  E  R  E  *  P  L  S  L  L  G  V  F  S  F  C  F  Y  I  L  L  *  L  A  I  K  C  S  L  P  *  I  I  Y  V  K  I  Y  I  *  S  T  E  K  E  *  G  S  M  Y  R  *  P  Y  C  F  L  I  D  C  V  E  M  E  D  *  K  S  L  N  Y  P  H  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0059I05.3" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="119605" stop="119704"/>
                    <exon start="119800" stop="119882"/>
                    <exon start="121394" stop="121510"/>
                    <exon start="121599" stop="121702"/>
                    <exon start="122261" stop="122327"/>
                    <exon start="123523" stop="123656"/>
                    <exon start="123772" stop="123820"/>
                    <exon start="124256" stop="124327"/>
                    <exon start="124413" stop="124514"/>
                    <exon start="124595" stop="124662"/>
                    <exon start="124851" stop="125003"/>
                    <exon start="125112" stop="125169"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1104</number_coding_nucleotides>
                  <number_encoded_amino_acids>368</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFGFWICFLWNCSEVEKLRIQSIFCSISIIMANPTGRSFLQVAATEEAVAPPLRVVQIEGLVILKIIKHCQEFSPALVTGQLLGLDVGSVLEVTNCFPFPVREEDEEIEAEGANYQLEMMRCLREVNVDNNTVGWYQSTLFGSYQTVELIETFMNYQENIKRCVCIIYDPSRSNQGVLALKALKLSDSFMELYKSNNFTGEKLREKNLSWVDIFEEIPIKVSNSALISAFMTELEPDTPVTQCDYERLQLSTNPYLERNVEFLIECMDDLSMEQQKFQFYYRNLSRQQAQQQAWLQKRRTENMARKAAGEELLPEEDPSNPVFKPLPEPSRLDSFLITNQISNYCNQINGVAGQSLSRLHLMKALHEN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="122062" e_stop="122327"/>
            <exon e_start="123523" e_stop="123656"/>
            <exon e_start="123772" e_stop="123820"/>
            <exon e_start="124256" e_stop="124327"/>
            <exon e_start="124413" e_stop="124514"/>
            <exon e_start="124595" e_stop="124662"/>
            <exon e_start="124851" e_stop="125003"/>
            <exon e_start="125112" e_stop="125460"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.990" e_score="0.887"/>
          <exon-intron don_prob="0.949" acc_prob="0.999" e_score="0.993"/>
          <exon-intron don_prob="0.938" acc_prob="0.780" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.869" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.899" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.887">
            <gDNA_exon_boundary e_start="122062" e_stop="122327" e_length="266"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.990">
            <gDNA_intron_boundary i_start="122328" i_stop="123522" i_length="1195"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="123523" e_stop="123656" e_length="134"/>
          </exon>
          <intron i_serial="2" don_prob="0.949" acc_prob="0.999">
            <gDNA_intron_boundary i_start="123657" i_stop="123771" i_length="115"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="123772" e_stop="123820" e_length="49"/>
          </exon>
          <intron i_serial="3" don_prob="0.938" acc_prob="0.780">
            <gDNA_intron_boundary i_start="123821" i_stop="124255" i_length="435"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="124256" e_stop="124327" e_length="72"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.869">
            <gDNA_intron_boundary i_start="124328" i_stop="124412" i_length="85"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="124413" e_stop="124514" e_length="102"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.993">
            <gDNA_intron_boundary i_start="124515" i_stop="124594" i_length="80"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="124595" e_stop="124662" e_length="68"/>
          </exon>
          <intron i_serial="6" don_prob="0.987" acc_prob="0.999">
            <gDNA_intron_boundary i_start="124663" i_stop="124850" i_length="188"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="124851" e_stop="125003" e_length="153"/>
          </exon>
          <intron i_serial="7" don_prob="0.899" acc_prob="1.000">
            <gDNA_intron_boundary i_start="125004" i_stop="125111" i_length="108"/>
          </intron>
          <exon e_serial="8" e_score="0.994">
            <gDNA_exon_boundary e_start="125112" e_stop="125460" e_length="349"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122062" stop="122327"/>
              <exon start="123523" stop="123656"/>
              <exon start="123772" stop="123808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441509" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122272" stop="122327"/>
              <exon start="123523" stop="123656"/>
              <exon start="123772" stop="123820"/>
              <exon start="124256" stop="124327"/>
              <exon start="124413" stop="124514"/>
              <exon start="124595" stop="124662"/>
              <exon start="124851" stop="124875"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E581588" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122290" stop="122327"/>
              <exon start="123523" stop="123656"/>
              <exon start="123772" stop="123820"/>
              <exon start="124256" stop="124327"/>
              <exon start="124413" stop="124514"/>
              <exon start="124595" stop="124662"/>
              <exon start="124851" stop="125003"/>
              <exon start="125112" stop="125304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727526" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122294" stop="122327"/>
              <exon start="123523" stop="123656"/>
              <exon start="123772" stop="123820"/>
              <exon start="124256" stop="124327"/>
              <exon start="124413" stop="124514"/>
              <exon start="124595" stop="124662"/>
              <exon start="124851" stop="125003"/>
              <exon start="125112" stop="125180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E581589" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123610" stop="123656"/>
              <exon start="123772" stop="123820"/>
              <exon start="124256" stop="124327"/>
              <exon start="124413" stop="124514"/>
              <exon start="124595" stop="124662"/>
              <exon start="124851" stop="125003"/>
              <exon start="125112" stop="125460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123610" stop="123656"/>
              <exon start="123772" stop="123820"/>
              <exon start="124256" stop="124327"/>
              <exon start="124413" stop="124514"/>
              <exon start="124595" stop="124662"/>
              <exon start="124851" stop="125003"/>
              <exon start="125112" stop="125460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692367" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123643" stop="123656"/>
              <exon start="123772" stop="123820"/>
              <exon start="124256" stop="124327"/>
              <exon start="124413" stop="124514"/>
              <exon start="124595" stop="124662"/>
              <exon start="124851" stop="125003"/>
              <exon start="125112" stop="125176"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243251" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124309" stop="124327"/>
              <exon start="124413" stop="124514"/>
              <exon start="124595" stop="124662"/>
              <exon start="124851" stop="125003"/>
              <exon start="125112" stop="125363"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560217" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124314" stop="124327"/>
              <exon start="124413" stop="124514"/>
              <exon start="124595" stop="124662"/>
              <exon start="124851" stop="125003"/>
              <exon start="125112" stop="125437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E421248" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124319" stop="124327"/>
              <exon start="124413" stop="124514"/>
              <exon start="124595" stop="124662"/>
              <exon start="124851" stop="125003"/>
              <exon start="125112" stop="125460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452960" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124616" stop="124662"/>
              <exon start="124851" stop="125003"/>
              <exon start="125112" stop="125412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E598422" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124902" stop="125003"/>
              <exon start="125112" stop="125460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553967" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124902" stop="125003"/>
              <exon start="125112" stop="125460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553141" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125128" stop="125460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238812" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGAGAAAGTTATTATCAAAAAAGGGAGTAACAAAACTGTCATACATGTTAACAATAATAAAACTGTCTTACTTGTTACACAGTAGTGAGAAAGACATGAAAAGCTTGCTCTACCTTTCTTTCCTACATAATTGTCATCTTAACTTTTACTATTACTAATTTGCTCATAATATGGACCTCATTGATGGTTATTTTCCAGGTATCAATCAACTTTGTTTGGTTCATATCAGACAGTGGAACTGATAGAGACCTTCATGAATTACCAG : GAGAATATAAAACGTTGTGTCTGCATAATCTATGATCCTTCTAGATCCAACCAAGGTGTCTTAGCTTTGAAAGCCTTGAAGCTTTCTGATTCTTTCATGGAACTCTACAAGAGTAACAACTTTACTGGAGAGAA : GCTGAGAGAAAAGAATCTTTCATGGGTTGACATCTTTGAAGAGATACCA : ATAAAAGTTTCAAATTCTGCACTCATTAGTGCCTTTATGACTGAATTGGAACCCGATACACCTGTAACTCAG : TGTGATTATGAACGCTTACAATTATCAACCAATCCATATTTGGAGAGGAATGTGGAATTTTTGATTGAATGCATGGATGACTTGTCGATGGAGCAGCAAAAG : TTCCAATTCTATTACCGGAATCTTTCTCGTCAACAAGCTCAGCAGCAAGCTTGGCTTCAGAAGAGGAG : GACTGAGAACATGGCACGTAAAGCTGCAGGAGAAGAGCTACTGCCAGAAGAGGATCCCTCTAATCCTGTCTTTAAGCCACTCCCAGAGCCCTCACGGTTGGATAGCTTTCTCATAACTAATCAAATTTCAAATTACTGCAACCAGATTAATGG : AGTTGCGGGACAAAGCCTCAGTAGACTACATCTGATGAAGGCTTTGCACGAGAACTGAGCAAGTTTTGCGTTGGCAATTTGTACCTTAGATTTTTGTGCCTTTTTTTTCAACTTTACTGATGTGAGAGGGAAAGAGAATGACCTTTATCTCTGTTAGGTGTCTTTAGTTTTTGCTTTTACATTCTTCTATGATTGGCAATCAAGTGTAGCCTACCTTGAATCATATATGTGAAGATTTACATCTAGTCCACAGAGAAGGAATAGGGATCTATGTATCGATGACCTTATTGTTTTTTGATCGATTGTGTGGAAATGGAAGATTAAAAATCTCTCAATTACCCTCATTAAT</gDNA_template>
            <first_frame> K  R  K  L  L  S  K  K  G  V  T  K  L  S  Y  M  L  T  I  I  K  L  S  Y  L  L  H  S  S  E  K  D  M  K  S  L  L  Y  L  S  F  L  H  N  C  H  L  N  F  Y  Y  Y  *  F  A  H  N  M  D  L  I  D  G  Y  F  P  G  I  N  Q  L  C  L  V  H  I  R  Q  W  N  *  *  R  P  S  *  I  T  R :   R  I  *  N  V  V  S  A  *  S  M  I  L  L  D  P  T  K  V  S  *  L  *  K  P  *  S  F  L  I  L  S  W  N  S  T  R  V  T  T  L  L  E  R   : S  *  E  K  R  I  F  H  G  L  T  S  L  K  R  Y  Q :   *  K  F  Q  I  L  H  S  L  V  P  L  *  L  N  W  N  P  I  H  L  *  L  S :   V  I  M  N  A  Y  N  Y  Q  P  I  H  I  W  R  G  M  W  N  F  *  L  N  A  W  M  T  C  R  W  S  S  K  S :   S  N  S  I  T  G  I  F  L  V  N  K  L  S  S  K  L  G  F  R  R  G   : G  L  R  T  W  H  V  K  L  Q  E  K  S  Y  C  Q  K  R  I  P  L  I  L  S  L  S  H  S  Q  S  P  H  G  W  I  A  F  S  *  L  I  K  F  Q  I  T  A  T  R  L  M   : E  L  R  D  K  A  S  V  D  Y  I  *  *  R  L  C  T  R  T  E  Q  V  L  R  W  Q  F  V  P  *  I  F  V  P  F  F  S  T  L  L  M  *  E  G  K  R  M  T  F  I  S  V  R  C  L  *  F  L  L  L  H  S  S  M  I  G  N  Q  V  *  P  T  L  N  H  I  C  E  D  L  H  L  V  H  R  E  G  I  G  I  Y  V  S  M  T  L  L  F  F  D  R  L  C  G  N  G  R  L  K  I  S  Q  L  P  S  L   </first_frame>
            <second_frame>  R  E  S  Y  Y  Q  K  R  E  *  Q  N  C  H  T  C  *  Q  *  *  N  C  L  T  C  Y  T  V  V  R  K  T  *  K  A  C  S  T  F  L  S  Y  I  I  V  I  L  T  F  T  I  T  N  L  L  I  I  W  T  S  L  M  V  I  F  Q  V  S  I  N  F  V  W  F  I  S  D  S  G  T  D  R  D  L  H  E  L  P   : G  E  Y  K  T  L  C  L  H  N  L  *  S  F  *  I  Q  P  R  C  L  S  F  E  S  L  E  A  F  *  F  F  H  G  T  L  Q  E  *  Q  L  Y  W  R  E  :  A  E  R  K  E  S  F  M  G  *  H  L  *  R  D  T   : N  K  S  F  K  F  C  T  H  *  C  L  Y  D  *  I  G  T  R  Y  T  C  N  S   : V  *  L  *  T  L  T  I  I  N  Q  S  I  F  G  E  E  C  G  I  F  D  *  M  H  G  *  L  V  D  G  A  A  K   : V  P  I  L  L  P  E  S  F  S  S  T  S  S  A  A  S  L  A  S  E  E  E  :  D  *  E  H  G  T  *  S  C  R  R  R  A  T  A  R  R  G  S  L  *  S  C  L  *  A  T  P  R  A  L  T  V  G  *  L  S  H  N  *  S  N  F  K  L  L  Q  P  D  *  W  :  S  C  G  T  K  P  Q  *  T  T  S  D  E  G  F  A  R  E  L  S  K  F  C  V  G  N  L  Y  L  R  F  L  C  L  F  F  Q  L  Y  *  C  E  R  E  R  E  *  P  L  S  L  L  G  V  F  S  F  C  F  Y  I  L  L  *  L  A  I  K  C  S  L  P  *  I  I  Y  V  K  I  Y  I  *  S  T  E  K  E  *  G  S  M  Y  R  *  P  Y  C  F  L  I  D  C  V  E  M  E  D  *  K  S  L  N  Y  P  H  *  </second_frame>
            <third_frame>   E  K  V  I  I  K  K  G  S  N  K  T  V  I  H  V  N  N  N  K  T  V  L  L  V  T  Q  *  *  E  R  H  E  K  L  A  L  P  F  F  P  T  *  L  S  S  *  L  L  L  L  L  I  C  S  *  Y  G  P  H  *  W  L  F  S  R  Y  Q  S  T  L  F  G  S  Y  Q  T  V  E  L  I  E  T  F  M  N  Y  Q  :  E  N  I  K  R  C  V  C  I  I  Y  D  P  S  R  S  N  Q  G  V  L  A  L  K  A  L  K  L  S  D  S  F  M  E  L  Y  K  S  N  N  F  T  G  E  K :   L  R  E  K  N  L  S  W  V  D  I  F  E  E  I  P  :  I  K  V  S  N  S  A  L  I  S  A  F  M  T  E  L  E  P  D  T  P  V  T  Q  :  C  D  Y  E  R  L  Q  L  S  T  N  P  Y  L  E  R  N  V  E  F  L  I  E  C  M  D  D  L  S  M  E  Q  Q  K  :  F  Q  F  Y  Y  R  N  L  S  R  Q  Q  A  Q  Q  Q  A  W  L  Q  K  R  R :   T  E  N  M  A  R  K  A  A  G  E  E  L  L  P  E  E  D  P  S  N  P  V  F  K  P  L  P  E  P  S  R  L  D  S  F  L  I  T  N  Q  I  S  N  Y  C  N  Q  I  N  G :   V  A  G  Q  S  L  S  R  L  H  L  M  K  A  L  H  E  N  *  A  S  F  A  L  A  I  C  T  L  D  F  C  A  F  F  F  N  F  T  D  V  R  G  K  E  N  D  L  Y  L  C  *  V  S  L  V  F  A  F  T  F  F  Y  D  W  Q  S  S  V  A  Y  L  E  S  Y  M  *  R  F  T  S  S  P  Q  R  R  N  R  D  L  C  I  D  D  L  I  V  F  *  S  I  V  W  K  W  K  I  K  N  L  S  I  T  L  I  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0059I05.3" strand="+"/>
                <serials PGL_serial="16" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="122247" stop="122327"/>
                    <exon start="123523" stop="123656"/>
                    <exon start="123772" stop="123820"/>
                    <exon start="124256" stop="124327"/>
                    <exon start="124413" stop="124514"/>
                    <exon start="124595" stop="124662"/>
                    <exon start="124851" stop="125003"/>
                    <exon start="125112" stop="125169"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>714</number_coding_nucleotides>
                  <number_encoded_amino_acids>238</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WLFSRYQSTLFGSYQTVELIETFMNYQENIKRCVCIIYDPSRSNQGVLALKALKLSDSFMELYKSNNFTGEKLREKNLSWVDIFEEIPIKVSNSALISAFMTELEPDTPVTQCDYERLQLSTNPYLERNVEFLIECMDDLSMEQQKFQFYYRNLSRQQAQQQAWLQKRRTENMARKAAGEELLPEEDPSNPVFKPLPEPSRLDSFLITNQISNYCNQINGVAGQSLSRLHLMKALHEN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="126137" PGL_stop="126859"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="126137" e_stop="126859"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.961"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.961">
            <gDNA_exon_boundary e_start="126137" e_stop="126859" e_length="723"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126137" stop="126859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E600064" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCTCATATATTTCATCAAATGACAGAGAAGTACAAAACTCTCTCTATCACTATCTAGTCCAAAAACATCAGATTAGGAGGTTAAGATAACAACAATAGGATATGATAGAAAGTCAAAGAGAAAGGGAAATTCATCAAGTTTGTAACAAGTTTTAGTATACTTCCATTCTTTGAGGAACAGGTGTTTTGATGACCTGCAAGATTTGAACCACTTCAGCCATTGAAGGCCTACTTGATGGTATTTGAGAAGTGCACACCAATGCCAACTTCAGAACAGGCAAAACTTCCTCTTCAGGATAAGTATTCATAGTTGGATCAACACACTCCAACACATTGCCTTGCTCAAGCAAAACTCTCACATGATCATTGAGTATCAACACATTGTCCTCTCCATACTCAACTGGCCTTCTCCCAGTGACAATTTCAAGAATCAACATCCCAAAACCATAAACGTCACACTTCTCATTCACCCTTAAGCTCTGGCATGCCAATTCAGGGGCTACATAGCCTAGTGCACTCTGGAACCTGCTGCTTATCATGTGCTTATCGAGCTTTGTCACTAGCCTTGCCAGCCCGAAATCAGATATTCTCGGGTTGAAGTTCTCATCAAGGAGAATGTTGCTAGGCTTTATGTTGTAGTGTATGATTGCTGGCCTAAACGCGTGGTGCAAATGTGCTAGTCCCTTGGCTGTTCCAAGCACAATGTTGAATCGAGTGGACCAA</gDNA_template>
            <first_frame> L  S  Y  I  S  S  N  D  R  E  V  Q  N  S  L  Y  H  Y  L  V  Q  K  H  Q  I  R  R  L  R  *  Q  Q  *  D  M  I  E  S  Q  R  E  R  E  I  H  Q  V  C  N  K  F  *  Y  T  S  I  L  *  G  T  G  V  L  M  T  C  K  I  *  T  T  S  A  I  E  G  L  L  D  G  I  *  E  V  H  T  N  A  N  F  R  T  G  K  T  S  S  S  G  *  V  F  I  V  G  S  T  H  S  N  T  L  P  C  S  S  K  T  L  T  *  S  L  S  I  N  T  L  S  S  P  Y  S  T  G  L  L  P  V  T  I  S  R  I  N  I  P  K  P  *  T  S  H  F  S  F  T  L  K  L  W  H  A  N  S  G  A  T  *  P  S  A  L  W  N  L  L  L  I  M  C  L  S  S  F  V  T  S  L  A  S  P  K  S  D  I  L  G  L  K  F  S  S  R  R  M  L  L  G  F  M  L  *  C  M  I  A  G  L  N  A  W  C  K  C  A  S  P  L  A  V  P  S  T  M  L  N  R  V  D  Q </first_frame>
            <second_frame>  S  H  I  F  H  Q  M  T  E  K  Y  K  T  L  S  I  T  I  *  S  K  N  I  R  L  G  G  *  D  N  N  N  R  I  *  *  K  V  K  E  K  G  K  F  I  K  F  V  T  S  F  S  I  L  P  F  F  E  E  Q  V  F  *  *  P  A  R  F  E  P  L  Q  P  L  K  A  Y  L  M  V  F  E  K  C  T  P  M  P  T  S  E  Q  A  K  L  P  L  Q  D  K  Y  S  *  L  D  Q  H  T  P  T  H  C  L  A  Q  A  K  L  S  H  D  H  *  V  S  T  H  C  P  L  H  T  Q  L  A  F  S  Q  *  Q  F  Q  E  S  T  S  Q  N  H  K  R  H  T  S  H  S  P  L  S  S  G  M  P  I  Q  G  L  H  S  L  V  H  S  G  T  C  C  L  S  C  A  Y  R  A  L  S  L  A  L  P  A  R  N  Q  I  F  S  G  *  S  S  H  Q  G  E  C  C  *  A  L  C  C  S  V  *  L  L  A  *  T  R  G  A  N  V  L  V  P  W  L  F  Q  A  Q  C  *  I  E  W  T   </second_frame>
            <third_frame>   L  I  Y  F  I  K  *  Q  R  S  T  K  L  S  L  S  L  S  S  P  K  T  S  D  *  E  V  K  I  T  T  I  G  Y  D  R  K  S  K  R  K  G  N  S  S  S  L  *  Q  V  L  V  Y  F  H  S  L  R  N  R  C  F  D  D  L  Q  D  L  N  H  F  S  H  *  R  P  T  *  W  Y  L  R  S  A  H  Q  C  Q  L  Q  N  R  Q  N  F  L  F  R  I  S  I  H  S  W  I  N  T  L  Q  H  I  A  L  L  K  Q  N  S  H  M  I  I  E  Y  Q  H  I  V  L  S  I  L  N  W  P  S  P  S  D  N  F  K  N  Q  H  P  K  T  I  N  V  T  L  L  I  H  P  *  A  L  A  C  Q  F  R  G  Y  I  A  *  C  T  L  E  P  A  A  Y  H  V  L  I  E  L  C  H  *  P  C  Q  P  E  I  R  Y  S  R  V  E  V  L  I  K  E  N  V  A  R  L  Y  V  V  V  Y  D  C  W  P  K  R  V  V  Q  M  C  *  S  L  G  C  S  K  H  N  V  E  S  S  G  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0059I05.3" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="126373" stop="126612"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WYLRSAHQCQLQNRQNFLFRISIHSWINTLQHIALLKQNSHMIIEYQHIVLSILNWPSPSDNFKNQHPKTINVTLLIHP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="126511" PGL_stop="126137"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="126511" e_stop="126137"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="126511" e_stop="126137" e_length="375"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126511" stop="126137"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347721" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATACTCAATGATCATGTGAGAGTTTTGCTTGAGCAAGGCAATGTGTTGGAGTGTGTTGATCCAACTATGAATACTTATCCTGAAGAGGAAGTTTTGCCTGTTCTGAAGTTGGCATTGGTGTGCACTTCTCAAATACCATCAAGTAGGCCTTCAATGGCTGAAGTGGTTCAAATCTTGCAGGTCATCAAAACACCTGTTCCTCAAAGAATGGAAGTATACTAAAACTTGTTACAAACTTGATGAATTTCCCTTTCTCTTTGACTTTCTATCATATCCTATTGTTGTTATCTTAACCTCCTAATCTGATGTTTTTGGACTAGATAGTGATAGAGAGAGTTTTGTACTTCTCTGTCATTTGATGAAATATATGAGAG</gDNA_template>
            <first_frame> D  T  Q  *  S  C  E  S  F  A  *  A  R  Q  C  V  G  V  C  *  S  N  Y  E  Y  L  S  *  R  G  S  F  A  C  S  E  V  G  I  G  V  H  F  S  N  T  I  K  *  A  F  N  G  *  S  G  S  N  L  A  G  H  Q  N  T  C  S  S  K  N  G  S  I  L  K  L  V  T  N  L  M  N  F  P  F  S  L  T  F  Y  H  I  L  L  L  L  S  *  P  P  N  L  M  F  L  D  *  I  V  I  E  R  V  L  Y  F  S  V  I  *  *  N  I  *  E </first_frame>
            <second_frame>  I  L  N  D  H  V  R  V  L  L  E  Q  G  N  V  L  E  C  V  D  P  T  M  N  T  Y  P  E  E  E  V  L  P  V  L  K  L  A  L  V  C  T  S  Q  I  P  S  S  R  P  S  M  A  E  V  V  Q  I  L  Q  V  I  K  T  P  V  P  Q  R  M  E  V  Y  *  N  L  L  Q  T  *  *  I  S  L  S  L  *  L  S  I  I  S  Y  C  C  Y  L  N  L  L  I  *  C  F  W  T  R  *  *  *  R  E  F  C  T  S  L  S  F  D  E  I  Y  E   </second_frame>
            <third_frame>   Y  S  M  I  M  *  E  F  C  L  S  K  A  M  C  W  S  V  L  I  Q  L  *  I  L  I  L  K  R  K  F  C  L  F  *  S  W  H  W  C  A  L  L  K  Y  H  Q  V  G  L  Q  W  L  K  W  F  K  S  C  R  S  S  K  H  L  F  L  K  E  W  K  Y  T  K  T  C  Y  K  L  D  E  F  P  F  L  F  D  F  L  S  Y  P  I  V  V  I  L  T  S  *  S  D  V  F  G  L  D  S  D  R  E  S  F  V  L  L  C  H  L  M  K  Y  M  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0059I05.3" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="126510" stop="126289"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILNDHVRVLLEQGNVLECVDPTMNTYPEEEVLPVLKLALVCTSQIPSSRPSMAEVVQILQVIKTPVPQRMEVY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0059I05.3" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="126404" stop="126210"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SWHWCALLKYHQVGLQWLKWFKSCRSSKHLFLKEWKYTKTCYKLDEFPFLFDFLSYPIVVILTS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 201 chains have been computed
$ 
$ memory statistics:
$ 239464 bytes spliced alignments in total
$ 115 spliced alignments have been stored
$ 2082 bytes was the average size of a spliced alignment
$ 28960 bytes predicted gene locations in total
$ 18 predicted gene locations have been stored
$ 1608 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 225 backtrace matrices have been allocated
$ 
$ date finished: 2009-11-24 17:16:51
-->
