<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-11-24 17:16:55"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U576717" ref_strand="+" ref_description="SGN-U576717 Tomato 200607#2 [32 ESTs aligned] (*GB) gi|23343885|gb|AAM51555.1| (e_value=0) metacaspase 1 [Lycopersicon esculentum]; (*ATH) AT1G79340.1 (e_value=5e-150)  Symbol: None | latex-abundant protein, putative (AMC7) / caspase family protein, similar to latex-abundant protein (Hevea brasiliensis) gb:AAD13216; contains Pfam domain, PF00656: ICE-like protease (caspase) p20 domain | chr1:29847668-29849531 FORWA... ; (*SWP) sp|O64517|MCA4_ARATH (e_value=5e-149) Metacaspase-4 OS=Arabidopsis thaliana GN=AMC4; ">
      <seq>agccttttgacttaaaaagatctcaaattattcaatcaacaatcccaaaaaattctctaaactaaaaagatcaattttttttcttgaaaaatttcaatggcgaaaaaagcagtattaattggaatcaattatccaggaacaaaagcagaacttagaggttgtattaacgatgttaagcgaatgtacaattgtttacttaatcgttacggatttgctgaggaagacattactgttcttatagatactgatgattcttacacacaaccaactggtcggaatatacgtaaagctttatcggatcttgttggatctgctgaatcaggggattgtttgtttgtgcattacagtggacatggaactaggttacctgctgaaacgggtgaagaagatgatactggttttgatgagtgtattgttccttgtgatatgaatcttattacagatgatgattttagagagctcgttgacaaagttcctgaaggttgccagatcacaattgtatctgactcatgccacagtggtggcctcattgacaaagctaaagagcagataggggagagccacaagcaaggtgatgacgatgaaggccatggatctggttttggattcaagaatttcttacgtcgaaatgttgaagatgcatttgaatcccggggtatccaccttccaggtcgccaccatcgccgtgaggaagaagaggagaattttgctgagagtagtgtgattgagacggaagacggtgatcaagttcatgtgaagagcaagtccttgcctctttccactctcatcgagatacttaagcagaaaactggtaaggatgatattgatgttgggaaacttaggccaacactctttgacgtctttggcgaagatgcaagtcctaaggtgaagaaattcatgaaaatcatttttaacaagctacaaaagaataacgagcagggtggaggcggcgggttcatgggtatggttggtaacttggctcaagagtttctgaaacagaaacttgatgaaaatgatgagagctatgcaaaaccggccatggaaacacacgttgaaggtaaacaggaggtttatgccggttcaggtaatagaggtcttccagacagtggcattctcgtcagtgggtgccaaacagaccaaacatctgcggatgcaacccctgcaggcggagagtcttatggtgctctaagcaacgcaattcaggaaatcctggccgaatcagatggtccagtcaccaatgaggagcttgttagcaaggctaggaaaaagatgcagaaacaaggcttcacacaacgcccaggcctctactgcgatgatcatcacgttgatgctccttttgtttgttgattctactgtgctatgccttctcgagtagctgttgaaatacgactgtgaagtcaacgaggtgttatatagctacatccttttgtgtatttgtgtgattgtttgtgctaatgttggagtagctcttttactctggtgtttcagtagaaccatgctccatcatgtgaatgtgtactatttggctcttttttttttcttttaaatttggtcagagaataaggtattaaagaaccacagttttcggtattgtttaggatatttgaaagttaaatctggagaacttgtttgtatactgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="-" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="4035" stop="425"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3735" g_stop="3294" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="442" r_length="442" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3293" i_stop="1924" i_length="1370">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1923" g_stop="725" g_length="1199"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="1641" r_length="1199" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="-" ref_id="SGN-U576717" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1641</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U576717" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3735" e_stop="3294"/>
          <exon e_start="1923" e_stop="725"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCTTTTGACTTAAAAAGATCTCAAATTATTCAATCAACAATCCCAAAAAATTCTCTAAACTAAAAAGATCAATTTTTTTTCTTGAAAAATTTCAATGGCGAAAAAAGCAGTATTAATTGGAATCAATTATCCAGGAACAAAAGCAGAACTTAGAGGTTGTATTAACGATGTTAAGCGAATGTACAATTGTTTACTTAATCGTTACGGATTTGCTGAGGAAGACATTACTGTTCTTATAGATACTGATGATTCTTACACACAACCAACTGGTCGGAATATACGTAAAGCTTTATCGGATCTTGTTGGATCTGCTGAATCAGGGGATTGTTTGTTTGTGCATTACAGTGGACATGGAACTAGGTTACCTGCTGAAACGGGTGAAGAAGATGATACTGGTTTTGATGAGTGTATTGTTCCTTGTGATATGAATCTTATTACAGGTAATTCAACATTTTTTTTTACTTAAACCGCTGTTTTTTAAGGATTTGGAGTAGGGGAAATGGGGCGGGGATTATGAGGTGGGGAATCGAGTTGTCAGGTAGTCAATCGACTGAGCTATTTAGATTGTACTTGATCTAAATGATGGGTTTGTTCCAAGATTGTTTTTTTCTTTGTGTTTGTTGAATTATGTTGGGGGTTATTAGTTGTATTGGTTTGATTTAAATGATGGGTTTGTTCCAAAATTTGTTTTTTTTGTGTGTGGTATGCGTTTTAATGCAGCTACTTGAGCATTTCTTTGATCAAAATTAGGAATTGAATACTTAGGTAGTTAATCAACTGAGTTAGTAAGTCTGTACTTGATCTATATCATGAGTTTGTTAAAAAAATGTTTTTTTTTTGTGTGTTGTGTTGAATTTATTGGGGGTTTAGTTGTATTGCTTTGATTTGAAGTATGTATTTGCTCCAAAATTTGTTGTTTTTTGATTTTCTGTGTTGAGTACTTATATGGTTTGATCTAGATCATGGGTGTCTTCGAAAATTTGTTTTTTTTTAATGTGTTGTGTGTGTGATATGAATTTTATTGCAGGTATTTGTATTGCTTTGATCTAAATTTTGGGTTTGTTTCAAATTTCGCTTTTTGTTTGTTTGGGGTTGGGTGTTAGAGTTGATGTGGTAGGGTCTAGGAGATTGAGATCTTCAAATGGTTTTCTCAAAAAATGATCTTGAAAGGTTGAGTTGATCTGTTTTGATGATAATTCAGGTGGATCAAAGATATAAGGAGATTTGTAAAACGAGGAAATGGGATTTTAGAAATGAGAATTTGGGTTTCTAGAGTGATTGAAATAGTTGAATGGGGGACGCGTAACAGTTGGGAAAAAAGGAGGAGTGTAGTTTACTACATTGTGATACGAATCTCATATACAGGAACTTAATCATGGGTTGTTCCAAAATTTGTTTTTTTTTCCGTGTGTGTAAGTAATTTGTAGATTGGTATTAGACTAAGATCATCATAGAATATTGAGTAAAAAAGGATCTTGAAAGTGCTTAGTTGATCTGTTTTGATGATTATTGAGATGGATCCCGAGTTTTAGGAAGATTTGTGAAATGGGGAACTAGGATTTAGAAATGAGAATTTGGATCCAGAGCGATTAAAATTATTGAATGGTGGGAGATCAGAAAAAATTGGCAAAAAAAAGAGAATGGTCGTGATCCCACAAGTGGGATCTTGAAAGGCTAGGATGTACGCAAACCTTACCCTTGATTTCCGACACTTGGCTATACAGTTTATTACCTCTTGCTTATTTAATATTGGAAAAGTAACAGGCAATTAATATTGAACTGTTGGATGTGTTGTTTCATCCTTGATCAGATGATGATTTTAGAGAGCTCGTTGACAAAGTTCCTGAAGGTTGCCAGATCACAATTGTATCTGACTCATGCCACAGTGGTGGCCTCATTGACAAAGCTAAAGAGCAGATAGGGGAGAGCCACAAGCAAGGTGATGACGATGAAGGCCATGGATCTGGTTTTGGATTCAAGAATTTCTTACGTCGAAATGTTGAAGATGCATTTGAATCCCGGGGTATCCACCTTCCAGGTCGCCACCATCGCCGTGAGGAAGAAGAGGAGAATTTTGCTGAGAGTAGTGTGATTGAGACGGAAGACGGTGATCAAGTTCATGTGAAGAGCAAGTCCTTGCCTCTTTCCACTCTCATCGAGATACTTAAGCAGAAAACTGGTAAGGATGATATTGATGTTGGGAAACTTAGGCCAACACTCTTTGACGTCTTTGGCGAAGATGCAAGTCCTAAGGTGAAGAAATTCATGAAAATCATTTTTAACAAGCTACAAAAGAATAACGAGCAGGGTGGAGGCGGCGGGTTCATGGGTATGGTTGGTAACTTGGCTCAAGAGTTTCTGAAACAGAAACTTGATGAAAATGATGAGAGCTATGCAAAACCGGCCATGGAAACACACGTTGAAGGTAAACAGGAGGTTTATGCCGGTTCAGGTAATAGAGGTCTTCCAGACAGTGGCATTCTCGTCAGTGGGTGCCAAACAGACCAAACATCTGCGGATGCAACCCCTGCAGGCGGAGAGTCTTATGGTGCTCTAAGCAACGCAATTCAGGAAATCCTGGCCGAATCAGATGGTCCAGTCACCAATGAGGAGCTTGTTAGCAAGGCTAGGAAAAAGATGCAGAAACAAGGCTTCACACAACGCCCAGGCCTCTACTGCGATGATCATCACGTTGATGCTCCTTTTGTTTGTTGATTCTACTGTGCTATGCCTTCTCGAGTAGCTGTTGAAATACGACTGTGAAGTCAACGAGGTGTTATATAGCTACATCCTTTTGTGTATTTGTGTGATTGTTTGTGCTAATGTTGGAGTAGCTCTTTTACTCTGGTGTTTCAGTAGAACCATGCTCCATCATGTGAATGTGTACTATTTGGCTCTTTTTTTTTTCTTTTAAATTTGGTCAGAGAATAAGGTATTAAAGAACCACAGTTTTCGGTATTGTTTAGGATATTTGAAAGTTAAATCTGGAGAACTTGTTTGTATACTGAA</genome_strand>
        <mrna_strand>AGCCTTTTGACTTAAAAAGATCTCAAATTATTCAATCAACAATCCCAAAAAATTCTCTAAACTAAAAAGATCAATTTTTTTTCTTGAAAAATTTCAATGGCGAAAAAAGCAGTATTAATTGGAATCAATTATCCAGGAACAAAAGCAGAACTTAGAGGTTGTATTAACGATGTTAAGCGAATGTACAATTGTTTACTTAATCGTTACGGATTTGCTGAGGAAGACATTACTGTTCTTATAGATACTGATGATTCTTACACACAACCAACTGGTCGGAATATACGTAAAGCTTTATCGGATCTTGTTGGATCTGCTGAATCAGGGGATTGTTTGTTTGTGCATTACAGTGGACATGGAACTAGGTTACCTGCTGAAACGGGTGAAGAAGATGATACTGGTTTTGATGAGTGTATTGTTCCTTGTGATATGAATCTTATTACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATGATTTTAGAGAGCTCGTTGACAAAGTTCCTGAAGGTTGCCAGATCACAATTGTATCTGACTCATGCCACAGTGGTGGCCTCATTGACAAAGCTAAAGAGCAGATAGGGGAGAGCCACAAGCAAGGTGATGACGATGAAGGCCATGGATCTGGTTTTGGATTCAAGAATTTCTTACGTCGAAATGTTGAAGATGCATTTGAATCCCGGGGTATCCACCTTCCAGGTCGCCACCATCGCCGTGAGGAAGAAGAGGAGAATTTTGCTGAGAGTAGTGTGATTGAGACGGAAGACGGTGATCAAGTTCATGTGAAGAGCAAGTCCTTGCCTCTTTCCACTCTCATCGAGATACTTAAGCAGAAAACTGGTAAGGATGATATTGATGTTGGGAAACTTAGGCCAACACTCTTTGACGTCTTTGGCGAAGATGCAAGTCCTAAGGTGAAGAAATTCATGAAAATCATTTTTAACAAGCTACAAAAGAATAACGAGCAGGGTGGAGGCGGCGGGTTCATGGGTATGGTTGGTAACTTGGCTCAAGAGTTTCTGAAACAGAAACTTGATGAAAATGATGAGAGCTATGCAAAACCGGCCATGGAAACACACGTTGAAGGTAAACAGGAGGTTTATGCCGGTTCAGGTAATAGAGGTCTTCCAGACAGTGGCATTCTCGTCAGTGGGTGCCAAACAGACCAAACATCTGCGGATGCAACCCCTGCAGGCGGAGAGTCTTATGGTGCTCTAAGCAACGCAATTCAGGAAATCCTGGCCGAATCAGATGGTCCAGTCACCAATGAGGAGCTTGTTAGCAAGGCTAGGAAAAAGATGCAGAAACAAGGCTTCACACAACGCCCAGGCCTCTACTGCGATGATCATCACGTTGATGCTCCTTTTGTTTGTTGATTCTACTGTGCTATGCCTTCTCGAGTAGCTGTTGAAATACGACTGTGAAGTCAACGAGGTGTTATATAGCTACATCCTTTTGTGTATTTGTGTGATTGTTTGTGCTAATGTTGGAGTAGCTCTTTTACTCTGGTGTTTCAGTAGAACCATGCTCCATCATGTGAATGTGTACTATTTGGCTCTTTTTTTTTTCTTTTAAATTTGGTCAGAGAATAAGGTATTAAAGAACCACAGTTTTCGGTATTGTTTAGGATATTTGAAAGTTAAATCTGGAGAACTTGTTTGTATACTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U574326" ref_strand="+" ref_description="SGN-U574326 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|14195017|sp|Q9SEE4|PIRL_SOLLC (e_value=4e-169) RecName:; (*ATH) AT2G43120.1 (e_value=3e-112) | Symbol: None | pirin, putative, similar to SP:O00625 Pirin {Homo sapiens}; contains Pfam profile PF02678: Pirin | chr2:17934341-17936061 FORWARD | Aliases: None; (*SWP) sp|Q9SEE4|PIRL_SOLLC (e_value=3e-170) Pirin-like protein OS=Solanum lycopersicum; ">
      <seq>gttgaaacaaacattaaaaacatcaaaatgtctatgtcctctatttttaatagaccaagattggttgttaagaaagttttggctagagctcaaaataaaggtgatggtgctattgttagaagaagcattggaagacctgaattgcagaatcttgatccattcctcatgttagatgagtttagtgtttcacaacctgctggatttcctgaccatccacacagaggttttgagactgtcacttatatgttgcagggagcttttactcatcaagattttgctggtcacaagggtacaatcaggactggtgatgtgcagtggatgacagcaggaagaggtatagttcattcagaaatgcctgctggaccaggtactcaaaaggggttgcagctttggataaatttatcttctaaggacaaaatgattgagccaaggtatcaagaattgctacaccaagacataccaaaggctgaaaaagatggtgtttcggttactattttagcaggggaatccatggggaaaaaatcacaagttttcacgcgaacgcctacaatgtaccttgatttcaccctaaaaccaggttctgagcatcatcaaccgatccccgagacctggaatgccttcctctacatagttgaaggagagggagcgtttggttcttcggattcaaccactacaccagctcaccattgcttggttttaggccctggtgaaggtctaagtgtgtggaacaaatcttcaaagccattgaggtttgttctgataggagggcaaccgattaacgagcctgtcgtgcagtatggtccatttgttatgaacactaagagtgagattatgcaggcttatcaagattatcaacttggaaagaatggatttgaaagatcaagacaatggtattctaaatgagtaaacagagttacatcttatacttcatgaacattaagtgcaatagtcattagttttcttaatgatttcaagttgtgttagtctttgctttcatttgaaatgttatgtgtgttgagtgatgtatattagtgttcatctccttcatttgttaaagattgtatttatagtaatttatgttagagttcttgaattaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="+" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="5165" stop="7844"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5465" g_stop="5598" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5599" i_stop="5792" i_length="194">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5793" g_stop="5842" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="184" r_length="50" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5843" i_stop="5932" i_length="90">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5933" g_stop="6000" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="252" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6001" i_stop="6184" i_length="184">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6185" g_stop="6247" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="315" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6248" i_stop="6452" i_length="205">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6453" g_stop="6556" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="419" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="6557" i_stop="6865" i_length="309">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="6866" g_stop="7550" g_length="685"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="1104" r_length="685" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="+" ref_id="SGN-U574326" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>1104</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U574326" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5465" e_stop="5598"/>
          <exon e_start="5793" e_stop="5842"/>
          <exon e_start="5933" e_stop="6000"/>
          <exon e_start="6185" e_stop="6247"/>
          <exon e_start="6453" e_stop="6556"/>
          <exon e_start="6866" e_stop="7550"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGAAACAAACATTAAAAACATCAAAATGTCTATGTCCTCTATTTTTAGTAGACCAAGATTGGTTGTTAAGAAAGTTTTGGCTAGAGCTCAAAATGAAGGTGATGGTGCTATTGTTAGAAGAAGCATTGGAAGGTAACTATGTTTCTATACTTCTTTCCTTTTTCTTGATTTTTTATCATCGTTGTGATAATCGAGAAATCTCTGACGATCATAAATATGTTGGTGAATAATAATCACATCTTTTTATTTTTCTCCAAATTAGATACCATATATCAGAAACACGACTCGAATACTGATTGTTTTTTTTTTATATAATATTTGATCAGGCCTGAATTGCAGAATCTTGATCCATTCCTCATGTTAGATGAGTTTAGTGGTAATTTTTTTTTCTCTTAGTATATTATTTTGTGGATTTTATTTTGATTTTGACTTATTAAAAAGCTATGTTATTTTTGGCTTCTTGCAGTTTCACAACCTGCTGGATTTCCTGACCATCCACACAGAGGTTTTGAGACTGTCACTTATATGTTGCAGGTAAAAATTCATTTTAATTTCTTTTTTTTTTGGGTGAAAGTTTAACTTTTGTACACCGACCAAAAAAATATTGATATATACTATTAGGTATCGCGATGTATATAAGTTAAACTCTGTATTTGGTGTATGGATTATGGAGATTGAAAATTCTAATGTGATTTAATTTTGTGGTGTTTAATTTTAGGGAGCTTTTACTCATCAAGATTTTGCTGGTCACAAGGGTACAATCAGGACTGGTGATGTGCAGGTAATAAGTTTGCTCACAACACCACTATCAACTTAAGTTACGTACACTGACAGTGTGAAGATTTTTAATAATATCAGTGTAATATAACATAACATGTGATAGTTACCTCCTAAAGTGGGACTTCATGACGCGATAGAATATCGAATTTATGAAATTTAAAGTGTGTTTTATGATTTTATTTTTTTTCCCGTTTGGTTTAATGCAGTGGATGACAGCAGGAAGAGGTATAGTTCATTCAGAAATGCCTGCTGGACCAGGTACTCAAAAGGGGTTGCAGCTTTGGATAAATTTATCTTCTAAGGACAAAATGTAAGTTACATTGATTCAATTTTGACTTTAGTGTTTGAAAAATCTAGTATTTCATTTTTTAACATATTCCTATAAAACATGTACTCTGATCAAAATTCATAAAACTTAAGCGTTTAAGATTTAATATATATGTATTAAAGTATGACTTGACCTATATGAGTCAGACAAAGGGTGTTCGAGTAACCAGTCTTCAATCTGTGTGGCTAAAACATGCTTTAGTCACAACAACTCATGACCCTGTTACTTCACGAGCCTTCATTGCCCCGTTTTTTGTAACTTCACTCATTTTGTCCATCCATATTGATGCAGGATTGAGCCAAGGTATCAAGAATTGCTACACCAAGACATACCAAAGGCTGAAAAAGATGGTGTTTCGGTTACTATTTTAGCAGGGGAATCCATGGGGAAAAAATCACAAGTTTTCACGCGAACGCCTACAATGTACCTTGATTTCACCCTAAAACCAGGTTCTGAGCATCATCAACCGATCCCCGAGACCTGGAATGCCTTCCTCTACATAGTTGAAGGAGAGGGAGCGTTTGGTTCTTCGGATTCAACCACTACACCAGCTCACCATTGCTTGGTTTTAGGCCCTGGTGAAGGTCTAAGTGTGTGGAACAAATCTTCAAAGCCATTGAGGTTTGTTCTGATAGGAGGGCAACCGATTAACGAGCCTGTCGTGCAGTATGGTCCATTTGTTATGAACACTAAGAGTGAGATTATGCAGGCTTATCAAGATTATCAACTTGGAAAGAATGGATTTGAAAGATCAAGACAATGGTATTCTAAATGAGTAAACAGAGTTACATCTTATACTTCATGAACATTAAGTGCAATAGTCATTAGTTTTCTTAATGATTTCAAGTTGTGTTAGTCTTTGCTTTCATTTGAAATGTTATGTGTGTTGAGTGATGTTTATTAGTGTTCATTTCCTTCATTTGTTCAAGATTGTATTTATAGTAATTTATGTTAGAGTTCTTGAATTATATCTTAG</genome_strand>
        <mrna_strand>GTTGAAACAAACATTAAAAACATCAAAATGTCTATGTCCTCTATTTTTAATAGACCAAGATTGGTTGTTAAGAAAGTTTTGGCTAGAGCTCAAAATAAAGGTGATGGTGCTATTGTTAGAAGAAGCATTGGAAG..................................................................................................................................................................................................ACCTGAATTGCAGAATCTTGATCCATTCCTCATGTTAGATGAGTTTAGTG..........................................................................................TTTCACAACCTGCTGGATTTCCTGACCATCCACACAGAGGTTTTGAGACTGTCACTTATATGTTGCAG........................................................................................................................................................................................GGAGCTTTTACTCATCAAGATTTTGCTGGTCACAAGGGTACAATCAGGACTGGTGATGTGCAG.............................................................................................................................................................................................................TGGATGACAGCAGGAAGAGGTATAGTTCATTCAGAAATGCCTGCTGGACCAGGTACTCAAAAGGGGTTGCAGCTTTGGATAAATTTATCTTCTAAGGACAAAAT.....................................................................................................................................................................................................................................................................................................................GATTGAGCCAAGGTATCAAGAATTGCTACACCAAGACATACCAAAGGCTGAAAAAGATGGTGTTTCGGTTACTATTTTAGCAGGGGAATCCATGGGGAAAAAATCACAAGTTTTCACGCGAACGCCTACAATGTACCTTGATTTCACCCTAAAACCAGGTTCTGAGCATCATCAACCGATCCCCGAGACCTGGAATGCCTTCCTCTACATAGTTGAAGGAGAGGGAGCGTTTGGTTCTTCGGATTCAACCACTACACCAGCTCACCATTGCTTGGTTTTAGGCCCTGGTGAAGGTCTAAGTGTGTGGAACAAATCTTCAAAGCCATTGAGGTTTGTTCTGATAGGAGGGCAACCGATTAACGAGCCTGTCGTGCAGTATGGTCCATTTGTTATGAACACTAAGAGTGAGATTATGCAGGCTTATCAAGATTATCAACTTGGAAAGAATGGATTTGAAAGATCAAGACAATGGTATTCTAAATGAGTAAACAGAGTTACATCTTATACTTCATGAACATTAAGTGCAATAGTCATTAGTTTTCTTAATGATTTCAAGTTGTGTTAGTCTTTGCTTTCATTTGAAATGTTATGTGTGTTGAGTGATGTATATTAGTGTTCATCTCCTTCATTTGTTAAAGATTGTATTTATAGTAATTTATGTTAGAGTTCTTGAATTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U564991" ref_strand="+" ref_description="SGN-U564991 Tomato 200607#2 [12 ESTs aligned] (*GB) gi|623584|gb|AAA74116.1| (e_value=7e-109) putative; (*ATH) AT1G05810.1 (e_value=3e-99)  Symbol: ARA | Ras-related protein (ARA-1) (ARA) / small GTP-binding protein, putative, nearly identical to SP:P19892 Ras-related protein ARA-1 (Arabidopsis thaliana) (Gene 76:313-319(1989)) | chr1:1748313-1749459 FORWARD | Aliases: T20M3.8, T20M3_8,... ; (*SWP) sp|P19892|ARA1_ARATH (e_value=6e-96) Ras-related protein ARA-1 OS=Arabidopsis thaliana GN=ARA-1; ">
      <seq>caccccttcccccctctctctctctctagatcaccagtttgcattctttctctctctaaacctcaaaaagtttcaatttttcagcaaatggactcttcagatgatgagggtgaggagtatcttttcaagattgtaatcattggtgattctgcagtaggtaaatctaatttgcttacacgttatgcaagaaatgagtttaatttgcattcaaaagcaactattggagttgagtttcagacccaaactcttgaaattgatggaaaagaagttaaagctcagatttgggatactgctggacaagaaaggtttagagctgtgacttctgcttattatcgtggtgcttttggtgctcttgttgtttatgatatttcaagaaggacaacttttgatagtatccctcgttggcttgatgaactcaaaactcattcggatacaacggttgcaaggatactggtgggaaacaaatgtgacttggagaatataagagctgtgagcgtagaagaaggcaaaagcctggcagaatcagaagggatgttcttcatggagacatctgccctcgattcaacaaacgtgaacaaggctttcgagattgtgattcgagagatctataatagtgttagcagaaaggttttgaattccgattcttataaagccgaattatctgtcaacagagtcaacctggtcaacgatggtaccgatggatcgaaacaaaagcagggctactcttgttgttctaggtgattaatgttatgtttcttgattccccttaagttttacaagaatggttcattaaattatttttgctggtcatactgtttattgatttgttaatggataaagtacttttgtaatggtcaggaacttaatatttatattctatatggcagctgaaatgataaatgtttattttcccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="+" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="8415" stop="12527"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8715" g_stop="9135" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="421" r_length="421" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9136" i_stop="11734" i_length="2599">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11735" g_stop="12227" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="914" r_length="493" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="+" ref_id="SGN-U564991" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>914</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U564991" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8715" e_stop="9135"/>
          <exon e_start="11735" e_stop="12227"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCCCTTCCCCCCTCTCTCTCTCTCTAGATCACCAGTTTGCATTCTTTCTCTCTCTAAACCTCAAAAAGTTTCAATTTTTCAGCAAATGGACTCTTCAGATGATGAGGGTGAGGAGTATCTTTTCAAGATTGTAATCATTGGTGATTCTGCAGTAGGTAAATCTAATTTGCTTACACGTTATGCAAGAAATGAGTTTAATTTGCATTCAAAAGCAACTATTGGAGTTGAGTTTCAGACCCAAACTCTTGAAATTGATGGAAAAGAAGTTAAAGCTCAGATTTGGGATACTGCTGGACAAGAAAGGTTTAGAGCTGTGACTTCTGCTTATTATCGTGGTGCTTTTGGTGCTCTTGTTGTTTATGATATTTCAAGAAGGACAACTTTTGATAGTATCCCTCGTTGGCTTGATGAACTCAAAAGTATGTATCTTTTTTGCTAAAAGTTCCATTTTTTAATTTTTATAAGTTGGTTTTGGTTTATGTTGAATTCTTATTTGTCATTCAAAGTTTTCACCTTTTTTGGTGGATTGGCTTGAGTTTAGTCTTTTGAGATTTGATGATGTTATGATGGAATGGTAATTCTTAGATTTGAATTCTACATTCTAGTTTATGTTGCTAAAAAAAATACTCTTTTGTTTAGCTTGGTTTTGGTTTATGTTGAATTCCCATCCAAGTTTTATGCATTGTCTTTGGTTTGTATATAGAAAATTCTCACCTTTTTGGTGGATTGGCTGTAAAGCTTAGTTTTTTTTAGATTTGATGGTGTTAGGATAGAATGGTAATTCTTAGATTTGACTTCTATATTCTTGTTTATGTTGCTAGTAGTCTTTTCTTTGTTTAGCTTGGTTTTGGTTTATGTTGAATTCCCATCAAAGTTGTATGCATATCTTTTGCTTTGTGCAAGAAAAGTTTTCACCTTTTTCAAATATGGTGAGGTTTTGGTGGATTGGCTATAAAGTTCAGTTCTTGAGGTTTTGATTATGCTATGATATAATGGTAATTCTTAGATTTGGCATTTGTTGCTAAAATTCTTCTCTTTTTCTAGACTTGGTTTTGTTTTATGTTCATCTAAGCTTTATGCATTGTCTTTTCTTTGTGCACAGAAAGTTCTCAACTTTTTGGTGGATTGGCTGTAAAGTCTATTTTTTTGAGAATTGACGGTGTTATGATAGAATGCTAGTTCTTTAGATTTGACTTCTACGTTATTCGTTTTGTTTATAATTAGTTATTGGATAAATTGACAAGTGAGTCGAGATCTGATTGTTGTATTCGTATGTCTCTGTTTCTACAAAAAAAATTGAACTTAATTTTGGTTCATGTTGAATTCCCACTTTTCAACTTGGTTTTGGCATATGTTGAGTTCCCATCAAAGTATGATACACATATTTTCTTTTTTTCATAAAAGTTCCTCACCTTTTTGAGATTTATTGAGGTTGGTAGTATAAAGTTCAGTTTTTGAGATTTGATGGTGTTATGACATGATGGCAATTCTGGAATTTGACTTCCACATTCTTGGTTCTTGATTATAACTTATAAGTATGTAAGATATCTTGTAGATCCGAAAAGTCTTGGCTACTTTAACTATTTAGGACGATGGAATATGCCATAAGGGTAATTTTAATCGAGTTTTTCTAGAATTGAATAATGGATGTGTTCAATCTATATTTTTTGAATCTTGTTTTGGTTCCGATAACTTTTCTCTTTAACTGAATAATGTAAGATTTTACAGTTGCTATTAAGTCTAATTCAATCATTTTAGTAAAAAATTACTTACCAGACATAGAAACAAATGGCAATGTTAGCTAGAAAAATCTTGAGTCTTGATTATGTATCATTGTTACTTGAAGCAATGGCAAAGAAAGCGGTATATATGCCAATGTAGCTGTTATGCTCAATTTTGTCTAGATGCAGTTGGGAACCTATGATAAGAACGAATTAGACAGACTGTCAATTGGATGTATATTAGGAATTGGAATTCAAGTCATGCTTTTCTTTCTCCGAAAAGCCAATCCAAATGAACTTCTCAACGGATCATACTTATATGGAATCTGTTTTATTTGCTTGATTGTGAAAATAATTAGGACCAACAACCTGGCTTACCTACGTATGGTATTATGGTAGACTAAGGAGTCTCACGGATTGATAAAAAATCTCAGAGATTCTTTTGATGTTAAATGGTGCCATATTTATAACTTAGGTAGTCTCTCTGTTAAGCCCTTAGCTAACTAAGTTTTGGCTGGACGGGAGTGTATATTTGTTGCTTTGAGCCGTGAGCTGCTATGTGATACTTGCATGACCTTATTTTGTTATTCAAATCTGTTCTTGTCTTGCAAATATCATTTGAATCTTGAAAATGAATGACTTTGTGCTCACTGTTTCCAAAATTGAGAACTTTTAGAACTTAATGTCCATAATATAGATCGAGGAGTATTAACTCTTGATCTATCAGAATGAGTGGATCAGATACAAGGCCGTTTGCCCAAGTTCAAGATGTTAGCTTGAGCCCTGACATGGTCCGAGATCCCTATCTTTAAGGCCATTAAAGAACCCAGGGCCAGGGAAATGTGATAAACAGAATGTTAACATTTGCAGCATATATAACCACAAATGAGGTTTGTACTCCACAAGCTTCATTTAATCACGAGATGAAATGAGCAGAGGATTATGTCATCAAAATCAAAGTCAGTGTTAATAAGGTGCATCATTTTGCTTCCTGGTGTGATGGAGACAATGAAGTAGTTAATAGCGACTTAAGGAAATTCAGATACATACTTTTGAAGGAAATATATGTAGTAATATTAAGTTTTACAGACTCTTTATAGGTGCAGGTGCTGTACTTGAACTTTGCATTCACGAGCTTATTTATCACACTTTGCCTTGGAATGATACTCTCTGCTGTCGGGAATCCCAACTTTTATTTATACCGTTATAGTATTAGGTGTGCAAATTACATGTTATGGTGGTGTTCTATATGTTCTTCATACTCCCAATCATAACTGAAATAACCATTTTCATGCAGCTCATTCGGATACAACGGTTGCAAGGATACTGGTGGGAAACAAATGTGACTTGGAGAATATAAGAGCTGTGAGCGTAGAAGAAGGCAAAAGCCTGGCAGAATCAGAAGGGATGTTCTTCATGGAGACATCTGCCCTCGATTCAACAAACGTGAACAAGGCTTTCGAGATTGTGATTCGAGAGATCTATAATAGTGTTAGCAGAAAGGTTTTGAATTCCGATTCTTATAAAGCCGAATTATCTGTCAACAGAGTCAACCTGGTCAACGATGGTACCGATGGATCGAAACAAAAGCAGGGCTACTCTTGTTGTTCTAGGTGATTAATGTTATGTTTCTTGATTCCCCTTAAGTTTTACAAGAATGGTTCATTAAATTATTTTTGCTGGTCATACTGTTTATTGATTTGTTAATGGATAAAGTACTTTTGTAATGGTCAGGAACTTAATATTTATATTCTATATGGCAGCTGAAATGATAAATGTTTATTTTCCCC</genome_strand>
        <mrna_strand>CACCCCTTCCCCCCTCTCTCTCTCTCTAGATCACCAGTTTGCATTCTTTCTCTCTCTAAACCTCAAAAAGTTTCAATTTTTCAGCAAATGGACTCTTCAGATGATGAGGGTGAGGAGTATCTTTTCAAGATTGTAATCATTGGTGATTCTGCAGTAGGTAAATCTAATTTGCTTACACGTTATGCAAGAAATGAGTTTAATTTGCATTCAAAAGCAACTATTGGAGTTGAGTTTCAGACCCAAACTCTTGAAATTGATGGAAAAGAAGTTAAAGCTCAGATTTGGGATACTGCTGGACAAGAAAGGTTTAGAGCTGTGACTTCTGCTTATTATCGTGGTGCTTTTGGTGCTCTTGTTGTTTATGATATTTCAAGAAGGACAACTTTTGATAGTATCCCTCGTTGGCTTGATGAACTCAAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCATTCGGATACAACGGTTGCAAGGATACTGGTGGGAAACAAATGTGACTTGGAGAATATAAGAGCTGTGAGCGTAGAAGAAGGCAAAAGCCTGGCAGAATCAGAAGGGATGTTCTTCATGGAGACATCTGCCCTCGATTCAACAAACGTGAACAAGGCTTTCGAGATTGTGATTCGAGAGATCTATAATAGTGTTAGCAGAAAGGTTTTGAATTCCGATTCTTATAAAGCCGAATTATCTGTCAACAGAGTCAACCTGGTCAACGATGGTACCGATGGATCGAAACAAAAGCAGGGCTACTCTTGTTGTTCTAGGTGATTAATGTTATGTTTCTTGATTCCCCTTAAGTTTTACAAGAATGGTTCATTAAATTATTTTTGCTGGTCATACTGTTTATTGATTTGTTAATGGATAAAGTACTTTTGTAATGGTCAGGAACTTAATATTTATATTCTATATGGCAGCTGAAATGATAAATGTTTATTTTCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U604227" ref_strand="+" ref_description="SGN-U604227 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>cggagagtacgagcaacatagactattagcctcaaaacgcacctttgttatgtttcttttttcgattcgtaaatatatccctggtaaagaaataatggctaagtttatcttgatttatcatttgaaaattgtttaggttattgttatttattcttattttcaatgtgggatttaatagcatatttcgtcccttggttgtcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="-" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="13786" stop="12988"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13488" g_stop="13288" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="-" ref_id="SGN-U604227" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>201</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U604227" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13488" e_stop="13288"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAGAGTACGAGCAACATAGACTATTAGCCTCAAAATGCACCTTTTTTATGTTTCTTTTTTCGTTTCGTAAATATATCCCTGGTAAAGAAATAATGGCTAAGTTTATCTTGATTTATCATTTGAAAATTGTTTAGGTTATTGTTATTTATTCTTATTTTCAATGTGGGATTTAATAGCATATTTCGTCCCTTGGTTGTCG</genome_strand>
        <mrna_strand>CGGAGAGTACGAGCAACATAGACTATTAGCCTCAAAACGCACCTTTGTTATGTTTCTTTTTTCGATTCGTAAATATATCCCTGGTAAAGAAATAATGGCTAAGTTTATCTTGATTTATCATTTGAAAATTGTTTAGGTTATTGTTATTTATTCTTATTTTCAATGTGGGATTTAATAGCATATTTCGTCCCTTGGTTGTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U585937" ref_strand="+" ref_description="SGN-U585937 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157353362|emb|CAO45288.1| (e_value=4e-109) unnamed; (*ATH) AT2G43120.1 (e_value=2e-89) | Symbol: None | pirin, putative, similar to SP:O00625 Pirin {Homo sapiens}; contains Pfam profile PF02678: Pirin | chr2:17934341-17936061 FORWARD | Aliases: None; (*SWP) sp|Q9SEE4|PIRL_SOLLC (e_value=2e-106) Pirin-like protein OS=Solanum lycopersicum; ">
      <seq>cgggccgggaacacaaatatttcataatcaagaattggttatatgagagctatttctgaactatttttagtgaaaatcttcccatttgttagaaataaaaaagtttcaagaaagcctattttttttcctattaaaaatattaatatgtctgaatcaaatcaatatgattcttgttttgatagaccaagattggttattaagaaagttttggctaaacctcaaagtgaagggaatggagctgttgttagaagaagcattggaaggcatgaattgaggaatcttgatcctttcctaatgttggatgaattttcagtttctgctcctgctggttttcctgatcatccacacagaggttttgagacagtaacttacatgctacagggagcttttactcatcaagattttgctggtcacaagggcacaattaatactggtgatgtgcagtggatgacagcaggaagaggtataattcattcaaaaatgcctgcaggagaaggcagtcaaaaggggttgcaactttggataaatctctcttctaaggacaaaatgattgagccaaggtatcaagaactgctgaaagaagacataccaagagcagagaatgatggtgttaaagtaaaagttatagcaggtgaagcaatgggagtccaatccccggtttacacacaaacgcctacaatgtacctcgatttcaccctacaaccaacagcttactatcatcaagccatccctgaatcttggaacgccttcgtatatatagttgaaggagaaggtgtcttcggaattccgagttcaggtcctgtatcagctcaccattgcttggttttaggccctggagagggacttagtgtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="-" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="16705" stop="13503"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16405" g_stop="16153" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="263" r_length="253" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16152" i_stop="15749" i_length="404">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15748" g_stop="15699" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="313" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15698" i_stop="15465" i_length="234">
            <donor d_prob="0.843" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15464" g_stop="15397" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="381" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15396" i_stop="15001" i_length="396">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15000" g_stop="14938" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="444" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14937" i_stop="14746" i_length="192">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14745" g_stop="14642" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="548" r_length="104" r_score="0.990"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14641" i_stop="14108" i_length="534">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14107" g_stop="13803" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="853" r_length="305" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="-" ref_id="SGN-U585937" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>843</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U585937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16405" e_stop="16153"/>
          <exon e_start="15748" e_stop="15699"/>
          <exon e_start="15464" e_stop="15397"/>
          <exon e_start="15000" e_stop="14938"/>
          <exon e_start="14745" e_stop="14642"/>
          <exon e_start="14107" e_stop="13803"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACAAATATTTCATAATCAAGAATTGGTTATATGAGAGCTATTTCTGAACTATTTTTAGTGAAAATCTTCCCATTTGTTAGAAATAAAAAAGTTTCAAGAAAGCCTATTTTTTTTCCTATTAGAAATATTAATATGTCTGAATCAAATCAATATGATTCTTGTTTTGATAGACCAAGATTGGTTATTAAGAAAGTTTTGGCTAAACCTCAAAGTGAAGGGAATGGAGCTGTTGTTAGAAGAAGCATTGGAAGGTAATAAAATTTGGGATTTTTATATTTTTCACATTTTCTTTTTGTTGATTTTAAATTTTGTTTCTAAATTTTATGACTTTTTTGTCATTTGGGTATTTTTCATTTTGGACAGTAAAAGAAGTAACTTTAATAGGAAATTGTGTTTTGAAACTTTGACCTTGATGTGTTTTCTTGGTTTCCATATTGTAAAGTCTCTGTCTTTACGTGGTCTCGAATAAAGTTAGCTAGTACCTGTGTTATTAGTGCGAGTTGATAAATATCTCGTGTAATTAGTTAAGGTGCGGAAAAGCCGCCAATACACTACAAATATCAAAAAGAAAAAAAAAGTATGTGTTTGTGATTTTTTCTTTAATCTTGTTGCTTATTGAATGTGGGGATTTTGTTTTAAAAATTTGATCCTGCAGGCATGAATTGAGGAATCTTGATCCTTTCCTAATGTTGGATGAATTTTCAGGTACTGCTTTGAGTAATGTTGCTTGGATCCTCCAAAAATATTGTTCCACATGTGTCGGATTCTCCAAAAAGCCAAAAATACATAGCTTTTGGAGAATCTGAGACACACATGACGTATTTTTGAAGAGTCCGAGCAACTTAAGTTTTGAACATCTTACTGGAATATGTTGTTCATTTTTGCTTAGTTATTTTTTGAGCCAAGAAGAGTTGATAAAGTACTGTTTTATTGTTTCAGTTTCTGCTCCTGCTGGTTTTCCTGATCATCCACACAGAGGTTTTGAGACAGTAACTTACATGCTACAGGTAAAAACAGTTAGTTGCACACTTCAATCCTATATAATAATAGTGAGGGAAAGGGCGGACGAAGGGTGGAAAATGAAAGGCCTTTTCTTGTTCCCTAAGGCTGTGTGTGTGCCACGACCAAACACCTGTTCGATGCTCTTTAACCTCCCAATAATGATGGCTCTTTTGTCTTGGTATCCTAACCATCCAACAAAGAATAAGCAGCAAAGTGCCAAATGACATGTCTTGTTGAATCCATTGAATCGTACTGAGGCAGATGTAGTGTTTACTTGAACCCAATATTTTTGACACAAAACACAAAAATAAACGCACATCAAATTCTGAACTCATAATTTCAAAAGTGAAACGGGCACAGAAGATGTTGATAATGCTAATGTTGTGTTTTCGTTTCCTTAGGGAGCTTTTACTCATCAAGATTTTGCTGGTCACAAGGGCACAATTAATACTGGTGATGTGCAGGTATAGAATATTCAGCTCTTAACATTTTTACTTACAAGATATGTAGTTCGGATTCTCCAAAAATGCATAACTCTTGGAATATCCGACACACGTTCGACAATGTTATTAAAGAATCCAAGCAGCATAGCTTATAAGAACAGAAGAGATATTTTGGTTGCTGATTTATGTTTCTTATATTGGATGATATTGCAGTGGATGACAGCAGGAAGAGGTATAATTCATTCAGAAATGCCTGCAGGAGAAGGCAGTCAAAAGGGGTTGCAACTTTGGATAAATCTCTCTTCTAAGGACAAAATGTAAGTTAGTCATTTAATCATTAGAAGCTTTCGGTCTTATCACTCCTTTTGACCTATGTTGCTCGTACTCTTTGAAAATGCTGGCACACCCGTTTCAGATCCTCCATAAATGCACTATTATTTGGAGATTCTGACACGTGTCTATTGGCATTTTTAAAGAGTACCAGCAACACAACTTTTGACTGACCCCATATAGATACTTTACACACCACTACTTTATTGTACTTGGCTCTAGCATATAGTAGTAAAAAAATAATGTTAGCTCTTATCCTACTTTTATTGTGGGGCGGGGGGTTAGGAGTATTACTAGTATGCAGTATAAAGATTAATCATTCACTTTTCTGTTTCTGCTGTGTTTTGCTAAGCTTAATCATTCACTTTTGACTAACTTCTCAAAATCAAGATTTAGTTTGAACCAATATTTTCCCATGTTCAAGTTTATAGCCCAAAACGAAGACTTTGTGGCGAACACACGTTTGATATGTGATTGCTTTTTCTTTTTCAATTATTATTAAGTTCAAAGTTCAACTACAGGATTGAGCCAAGGTATCAAGAACTGCTGAAAGAAGACATACCAAGAGCAGAGAATGATGGTGTTAAAGTAAAAGTTATAGCAGGTGAAGCAATGGGAGTCCAATCCCCGGTTTACACACAAACGCCTACAATGTACCTCGATTTCACCCTACAACCAACAGCTTACTATCATCAAGCCATCCCTGAATCTTGGAACGCCTTCGTATATATAGTTGAAGGAGAAGGTGTCTTCGGAATTCCGAGTTCAGGTCCTGTATCAGCTCACCATTGCTTGGTTTTAGGCCCTGGAGAGGGACTTAGTGTAT</genome_strand>
        <mrna_strand>ACACAAATATTTCATAATCAAGAATTGGTTATATGAGAGCTATTTCTGAACTATTTTTAGTGAAAATCTTCCCATTTGTTAGAAATAAAAAAGTTTCAAGAAAGCCTATTTTTTTTCCTATTAAAAATATTAATATGTCTGAATCAAATCAATATGATTCTTGTTTTGATAGACCAAGATTGGTTATTAAGAAAGTTTTGGCTAAACCTCAAAGTGAAGGGAATGGAGCTGTTGTTAGAAGAAGCATTGGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................GCATGAATTGAGGAATCTTGATCCTTTCCTAATGTTGGATGAATTTTCAG..........................................................................................................................................................................................................................................TTTCTGCTCCTGCTGGTTTTCCTGATCATCCACACAGAGGTTTTGAGACAGTAACTTACATGCTACAG............................................................................................................................................................................................................................................................................................................................................................................................................GGAGCTTTTACTCATCAAGATTTTGCTGGTCACAAGGGCACAATTAATACTGGTGATGTGCAG................................................................................................................................................................................................TGGATGACAGCAGGAAGAGGTATAATTCATTCAAAAATGCCTGCAGGAGAAGGCAGTCAAAAGGGGTTGCAACTTTGGATAAATCTCTCTTCTAAGGACAAAAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGAGCCAAGGTATCAAGAACTGCTGAAAGAAGACATACCAAGAGCAGAGAATGATGGTGTTAAAGTAAAAGTTATAGCAGGTGAAGCAATGGGAGTCCAATCCCCGGTTTACACACAAACGCCTACAATGTACCTCGATTTCACCCTACAACCAACAGCTTACTATCATCAAGCCATCCCTGAATCTTGGAACGCCTTCGTATATATAGTTGAAGGAGAAGGTGTCTTCGGAATTCCGAGTTCAGGTCCTGTATCAGCTCACCATTGCTTGGTTTTAGGCCCTGGAGAGGGACTTAGTGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U595583" ref_strand="+" ref_description="SGN-U595583 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|212722420|ref|NP_001131711.1| (e_value=1e-47) hypothetical; (*ATH) AT2G43120.1 (e_value=1e-39) | Symbol: None | pirin, putative, similar to SP:O00625 Pirin {Homo sapiens}; contains Pfam profile PF02678: Pirin | chr2:17934341-17936061 FORWARD | Aliases: None; (*SWP) sp|Q9SEE4|PIRL_SOLLC (e_value=2e-48) Pirin-like protein OS=Solanum lycopersicum; ">
      <seq>atcaaaaagaaaaaaaaagtatgtgtttgtgattttttctttaatcttgttgcttattgaatgtggggattttttttaaaaatttgatcctgcaggcatgaattgaggaatcttgatcctttcctaatgttggatgaattttcagtttctgctcctgctggttttcctgatcatccacacagaggttttgagacagtaacttacatgctacagggagcttttactcatcaagattttgctggtcacaagggcacaattaatactggtgatgtgcagtggatgacagcaggaagaggtataattcattcagaaatgcctgcaggagaaggcagtcaaaaggggttgcaactttggataaatctctcttctaaggacaaaatgtaagttagtcatttaatcattagaagctttcggtcttatcactccttttgacctatgttgctcgtactctttgaaaatgctggcacacccgtttcagatcctccataaatgcactattatttggagattctgacacgtgtctattggcatttttaaagagtaccagcaacacaacttttgactgaccccatatagatactttacacaccactactttattgtacttggctctagcatatagtagtaaaaaaataatgttagctcttatcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="-" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="16144" stop="14070"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15844" g_stop="15699" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15698" i_stop="15465" i_length="234">
            <donor d_prob="0.843" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15464" g_stop="15397" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="213" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15396" i_stop="15001" i_length="396">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15000" g_stop="14938" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="276" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14937" i_stop="14746" i_length="192">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14745" g_stop="14370" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="652" r_length="376" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="-" ref_id="SGN-U595583" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U595583" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15844" e_stop="15699"/>
          <exon e_start="15464" e_stop="15397"/>
          <exon e_start="15000" e_stop="14938"/>
          <exon e_start="14745" e_stop="14370"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAAAAGAAAAAAAAAGTATGTGTTTGTGATTTTTTCTTTAATCTTGTTGCTTATTGAATGTGGGGATTTTGTTTTAAAAATTTGATCCTGCAGGCATGAATTGAGGAATCTTGATCCTTTCCTAATGTTGGATGAATTTTCAGGTACTGCTTTGAGTAATGTTGCTTGGATCCTCCAAAAATATTGTTCCACATGTGTCGGATTCTCCAAAAAGCCAAAAATACATAGCTTTTGGAGAATCTGAGACACACATGACGTATTTTTGAAGAGTCCGAGCAACTTAAGTTTTGAACATCTTACTGGAATATGTTGTTCATTTTTGCTTAGTTATTTTTTGAGCCAAGAAGAGTTGATAAAGTACTGTTTTATTGTTTCAGTTTCTGCTCCTGCTGGTTTTCCTGATCATCCACACAGAGGTTTTGAGACAGTAACTTACATGCTACAGGTAAAAACAGTTAGTTGCACACTTCAATCCTATATAATAATAGTGAGGGAAAGGGCGGACGAAGGGTGGAAAATGAAAGGCCTTTTCTTGTTCCCTAAGGCTGTGTGTGTGCCACGACCAAACACCTGTTCGATGCTCTTTAACCTCCCAATAATGATGGCTCTTTTGTCTTGGTATCCTAACCATCCAACAAAGAATAAGCAGCAAAGTGCCAAATGACATGTCTTGTTGAATCCATTGAATCGTACTGAGGCAGATGTAGTGTTTACTTGAACCCAATATTTTTGACACAAAACACAAAAATAAACGCACATCAAATTCTGAACTCATAATTTCAAAAGTGAAACGGGCACAGAAGATGTTGATAATGCTAATGTTGTGTTTTCGTTTCCTTAGGGAGCTTTTACTCATCAAGATTTTGCTGGTCACAAGGGCACAATTAATACTGGTGATGTGCAGGTATAGAATATTCAGCTCTTAACATTTTTACTTACAAGATATGTAGTTCGGATTCTCCAAAAATGCATAACTCTTGGAATATCCGACACACGTTCGACAATGTTATTAAAGAATCCAAGCAGCATAGCTTATAAGAACAGAAGAGATATTTTGGTTGCTGATTTATGTTTCTTATATTGGATGATATTGCAGTGGATGACAGCAGGAAGAGGTATAATTCATTCAGAAATGCCTGCAGGAGAAGGCAGTCAAAAGGGGTTGCAACTTTGGATAAATCTCTCTTCTAAGGACAAAATGTAAGTTAGTCATTTAATCATTAGAAGCTTTCGGTCTTATCACTCCTTTTGACCTATGTTGCTCGTACTCTTTGAAAATGCTGGCACACCCGTTTCAGATCCTCCATAAATGCACTATTATTTGGAGATTCTGACACGTGTCTATTGGCATTTTTAAAGAGTACCAGCAACACAACTTTTGACTGACCCCATATAGATACTTTACACACCACTACTTTATTGTACTTGGCTCTAGCATATAGTAGTAAAAAAATAATGTTAGCTCTTATCCT</genome_strand>
        <mrna_strand>ATCAAAAAGAAAAAAAAAGTATGTGTTTGTGATTTTTTCTTTAATCTTGTTGCTTATTGAATGTGGGGATTTT-TTTTAAAAATTTGATCCTGCAGGCATGAATTGAGGAATCTTGATCCTTTCCTAATGTTGGATGAATTTTCAG..........................................................................................................................................................................................................................................TTTCTGCTCCTGCTGGTTTTCCTGATCATCCACACAGAGGTTTTGAGACAGTAACTTACATGCTACAG............................................................................................................................................................................................................................................................................................................................................................................................................GGAGCTTTTACTCATCAAGATTTTGCTGGTCACAAGGGCACAATTAATACTGGTGATGTGCAG................................................................................................................................................................................................TGGATGACAGCAGGAAGAGGTATAATTCATTCAGAAATGCCTGCAGGAGAAGGCAGTCAAAAGGGGTTGCAACTTTGGATAAATCTCTCTTCTAAGGACAAAATGTAAGTTAGTCATTTAATCATTAGAAGCTTTCGGTCTTATCACTCCTTTTGACCTATGTTGCTCGTACTCTTTGAAAATGCTGGCACACCCGTTTCAGATCCTCCATAAATGCACTATTATTTGGAGATTCTGACACGTGTCTATTGGCATTTTTAAAGAGTACCAGCAACACAACTTTTGACTGACCCCATATAGATACTTTACACACCACTACTTTATTGTACTTGGCTCTAGCATATAGTAGTAAAAAAATAATGTTAGCTCTTATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U566331" ref_strand="+" ref_description="SGN-U566331 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157353366|emb|CAO45292.1| (e_value=1e-43) unnamed; (*ATH) AT1G05820.1 (e_value=8e-38) | Symbol: None | protease-associated (PA) domain-containing protein, contains weak similarity to protease associated (PA) domain proteins, Pfam:PF02225 | chr1:1749775-1753766 FORWARD | Aliases: T20M3.9, T20M3_9; ">
      <seq>gaaagacaggaaaaaaaatttaatgcagaaataggcgaagaaaattggggaaaatattgaggaagataaagggggaatcgacattgaataactaattatggcattttcatggcgttttattggactatctattcttgtttttcttctaaatgtatcatcaatagcacattctgctcctaccaatgcagataagtcttgcagcaatgaaatcaatatgatgctggtgaagttgtgggttaatggtggtgaggaagattcaatagttggcttgagtgcagcatttgggtctgtattacccactgatactaaacgtgcctccaggttgcctgctgttaatacacaacctttgaatggctgttctgcttcctccactaagttatcaggctctattgcactagctcgtcgcggtgaatgtgaatttataaccaaggccacggtcgcccaagcaggaggtgcaggaggtgttgtgctaataaataatgaagcaggtactctggatattgcttgtcctaataattctaccatatcaaatgtaaccattcctgttgtttcaatttcaaaagagggggcagatattattgataaatacatcaattcaggaaagaaagtggagctgctgttatattcgccagatcgccctattgtggactactcggtgtctttcatatggttgatggctgttggaacaatcatttgtgcagctctttggaaaaagtttactcatctaaggaaagtgacgactatgaactatcacaagagcccccttcccctatctcaattgacatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="+" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="23493" stop="27716"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23792" g_stop="24008" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24009" i_stop="25017" i_length="1009">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25018" g_stop="25176" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="376" r_length="159" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25177" i_stop="26257" i_length="1081">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26258" g_stop="26369" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="488" r_length="112" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26370" i_stop="26474" i_length="105">
            <donor d_prob="0.693" d_score="0.98"/>
            <acceptor a_prob="0.704" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26475" g_stop="26594" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="608" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26595" i_stop="27255" i_length="661">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="27256" g_stop="27437" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="609" r_stop="788" r_length="180" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="+" ref_id="SGN-U566331" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>790</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U566331" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23792" e_stop="24008"/>
          <exon e_start="25018" e_stop="25176"/>
          <exon e_start="26258" e_stop="26369"/>
          <exon e_start="26475" e_stop="26594"/>
          <exon e_start="27256" e_stop="27437"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGACAGGAAAAAAAATTTAATGCAGAAATAGGCGAAGAAAATTGGGGAAAATATTGAGGAAGATAAAGGGGGAATCGACATTGAATAACTAATTATGGCATTTTCATGGCGTTTTATTGGACTATCTATTCTTGTTTTTCTTCTAAATGTATCATCAATAGCACATTCTGCTCCTACCAATGCAGATAAGTCTTGCAGCAATGAAATCAATATGGTAAATGTTTTCAACCCTTTAACTAAATAGATAAAATAAATTGTGGGGTTTGTTTTTTGGGTGGATATTGTGTTAAAAATGTAATCTTTCATGGGTTTTGTAGATTTTTTTATTTGATGTTGTCATTTCTTGATTATGTGGAAAGTCATGACGGGGTTATGTATTGTTTTCTTTTGAGGGGGTTCAATAGTTAAGGATCTTTGTTTGGAATGGACATGTTGGTGGGAGGTGATACGTATCTAGTGGAATTAGTTGAGCTGGCCTAGACACCGCGATTATCATAAAAAGAAAAAACAATCTTTTTCGGGTAATGTTAATAAGATGATTTGAAATGGTGAGGATTGGGTTCATGCATTTGGTGGAATTTGTTGTGAAATGGAGTTATTTGATACATCATGTTTTGATCCTGTGCCGGGGTGGTAGAGTTACTCAGTGGAATAGTTGAGGTGTGGGCAAGTTAGCTCGGACACCACCTCCATAAAAAAGTTTAATTTGAGGTTTTGATGTGTGTGTTATAAGATTACTATACAAGGATTTATTCAAAATTTATTATACTCTTTCCATTCACTTTTACTTGTCCATTTTGGACTTTGCGCACCCTTGAGAAACAATGATTGAAATGATTATTTTACCACAATTTCCATGTTAGTTGATGTTTAGTCTCAGCTCTTTGGAAATGATTTGGAGTATAAGTAGTTAATGTGAGGGGTAAAACATGAAATAGATATGTTTTTCTGTTGATATGTTAAAAGTGACGAGTAAAACTGAAAATGTATTTTTAGTATAGACTAAAGTGGAGAAGTAAAAGTGAATTGAGAGCATATATTTAGGGTTGTATTTAGAAATAGGATGTATCGAAACTGCAACTTGATAAGAGATTGCATTTAACATGTAGAAGATTGTTTTGGTCCATTTCTTAACTGGACTTGAAGTATTCTCTATTTCCATCCTGTTTTGCATGTATAGAAACTTACCGTGCTAATCATTCTTTTCCTTTCTTTTGTTAAAGATGCTGGTGAAGTTGTGGGTTAATGGTGGTGAGGAAGATTCAATAGTTGGCTTGAGTGCAGCATTTGGGTCTGTATTACCCACTGATACTAAACGTGCCTCCAGGTTGCCTGCTGTTTATACACAACCTTTGAATGGCTGTTCTGCTTCCTCCACTAAGGTATTTACTCCACATTCCTTACACACCTACTTTTAGGTGGATATCGGACACGAAACATTGTGTTGCTGCTTGATTAAATAATAGTCATAATTCTTTTGCGGCCCAATTTCGGTTCTTTTGATCTTTCTTGATGATATTCCATCTCTCATTTGTTAACTTGCGAATATTTGCCAAGTCCTGCTATAAGAGCGAAGAATTGATGCAAATCTCAGCAAGGTTGAAAAGATTTAAGGAGCTGAATAGTGAACCAATCTCATTTATATAAAGGAGAAGTGAAGAAACAATTTTTTTAAAAATGTAGTTTTGGTGAAAACATCTACATGTGAAGCCATTGACCATCTCTTTGTCTTCTATCAGGAAGTTATAATTCAAACTTCTCAACTCTGCATACAACAACTTATTTTCAGCATATAAGAAAACTTGAAGTGTAAGTTTCACTCGTGAAAATGGAAATATACTTCTTTCTGGTGGATCACAGTGGAGGGTTGAAATAGGAGAAAAGAGTAGTTATGGAGATAGGTTGAGGATGATGTAGCACTATGTACAGGACGGTGAAGGAATGATCTCTTGAGAGCTTAAAAGTAGCCACAATCTTTCCTTCTTCTTTTTGATTAATATGATGAACTAAACACATACTAGATAAATAGTTAAATACCTTACTGAACAACCTTTTGTTCTGTCGTGAGTCTTGTCAACACCCTCACCCCTCTCTGGACAGAAACTCATCTTCATATAAGCTCTTGCTTGAATTGTTTATAAGTTTTTCAAGTGATAATCATTGTTTACATCATCTTCCAAAATTTAGAGGAAAAATATCCTTTTCATGGTAGTTTTCAGAAGTGGAACCAAATAGTAGTGTGGAGTAATTTCAAATTGTAAAATGAGCTGAAAGGGTTACCACTAGGATCTACCAGAAGTTAACTATTACAAACTGAGTTTTTACTTTGAATACCAAAGAAGTCTAAATTTGCTATGTCTGTTTGGCTGTTGTAAAAATAGGCTCGAGAATGTCCTATAAAAAGAAAATAATAGTGTTGTTGTTTGTTATACATTAATAATGCAGAAATATCATTTGTTCTAGTTATCAGGCTCTATTGCACTAGCTCGTCGCGGTGAATGTGAATTTATAACCAAGGCCACGGTCGCCCAAGCAGGAGGTGCAGGAGGTGTTGTGCTAATAAATAATGAAGGAGGTTGTAACCCTGACTCACATTGTCATCTTAGGTCTCAAGGTCTCTTTTATATGTTTCCCTTCATCTCTTTCTGATATGACGCCGCTTTTTCTTGCATTTATTTAGGTACTCTGGATATTGCTTGTCCTAATAATTCTACCATATCAAATGTAACCATTCCTGTTGTTTCAATTTCAAAAGAGGGGGCAGATATTATTGATAAATACATCAATTCAGGAAAGAAAGGTAAGCCCTGGCCTCATATGTATTGCTTAGATGTTTTGATGAAGGTTAGCTTTCTTTTGGATTCTAATTTTGGTTGTCAAGATGTTGATTAGCTTGTGTTGTAATCTACTTTTTCTATATTACATGCATTATAATTCATTTTAATGAGTGCTATTGAAGTATGAAATATCTTTATTATATATCATTGAGATGTAATCCCACTTCTTGCTGGTTAACTTTTGGTGCAAACAAGAGGTCCTTGTTGCATATATTGTTGGGTGTATTCTGTAGGAACTGTATGCCATTTGTGTGTTTGTATAAAGCTTTTAGATGATTCTTCATCTATTTATGGTTGGATCTTGATGATGTGACTTCACCGCAAAAGGCATGTCAGGTTAATACTTTGAAAAAACATTTAAGCAATGAGTTTGGGATGAAGGTTTTGTGTGATGTAACGAAGATAGAAGATCAAAAATTGATTTTCTCTTCAAATTGTCAGACATAGCTGGTGAGAATGTGGACTTAAATGCAGTGTTGGCTAACATCAAATGGCTTTTTTATTTGCAAACGATTATAGTGACTCTGTAATTGATGCATATCTTTTGTTCTGATCTTATTTCTTGTTGTTTGTTTTATTTCACTTGGAATACTTTTGATATATGGAATCCTTTTCTTAATCCAGTGGAGCTGCTGTTATATTCGCCAGATCGCCCTATTGTGGACTACTCGGTGTCTTTCATATGGTTGATGGCTGTTGGAACAATCATTTGTGCAGCTCTTTGGAAAAAGTTTACTCAATCTAAGGAAAGTGACGACTATGAACTATCACAAGAGCCCCCTTCCTAATCTCAAATTTGACATGCT</genome_strand>
        <mrna_strand>GAAAGACAGGAAAAAAAATTTAATGCAGAAATAGGCGAAGAAAATTGGGGAAAATATTGAGGAAGATAAAGGGGGAATCGACATTGAATAACTAATTATGGCATTTTCATGGCGTTTTATTGGACTATCTATTCTTGTTTTTCTTCTAAATGTATCATCAATAGCACATTCTGCTCCTACCAATGCAGATAAGTCTTGCAGCAATGAAATCAATATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTGGTGAAGTTGTGGGTTAATGGTGGTGAGGAAGATTCAATAGTTGGCTTGAGTGCAGCATTTGGGTCTGTATTACCCACTGATACTAAACGTGCCTCCAGGTTGCCTGCTGTTAATACACAACCTTTGAATGGCTGTTCTGCTTCCTCCACTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATCAGGCTCTATTGCACTAGCTCGTCGCGGTGAATGTGAATTTATAACCAAGGCCACGGTCGCCCAAGCAGGAGGTGCAGGAGGTGTTGTGCTAATAAATAATGAAGCAG.........................................................................................................GTACTCTGGATATTGCTTGTCCTAATAATTCTACCATATCAAATGTAACCATTCCTGTTGTTTCAATTTCAAAAGAGGGGGCAGATATTATTGATAAATACATCAATTCAGGAAAGAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCTGCTGTTATATTCGCCAGATCGCCCTATTGTGGACTACTCGGTGTCTTTCATATGGTTGATGGCTGTTGGAACAATCATTTGTGCAGCTCTTTGGAAAAAGTTTACTC-ATCTAAGGAAAGTGACGACTATGAACTATCACAAGAGCCCCCTTCC-CCTATCTCAATTGACATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U594243" ref_strand="+" ref_description="SGN-U594243 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>ctctttggaaaaagtttactcaatctaaagatgatgatatgaccgtcaaggaggaggatgacagtgaaattctgcacattactgcatggactgctattggatttgtcatctcagcatccacatatctggtgctgctttactttttcatgtctacgtggcttgtctggctgctgatattgcttttctgtctcggaggaatctaaggactgcataactgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="+" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="27049" stop="29213"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27349" g_stop="27377" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27378" i_stop="28732" i_length="1355">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28733" g_stop="28906" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="203" r_length="174" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="+" ref_id="SGN-U594243" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>203</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U594243" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27349" e_stop="27377"/>
          <exon e_start="28733" e_stop="28906"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTTGGAAAAAGTTTACTCAATCTAAGGAAAGTGACGACTATGAACTATCACAAGAGCCCCCTTCCTAATCTCAAATTTGACATGCTCAGCTTCTTATATTCTTTTAAATTCAGTTAGTAGCATTCTCAACATTGATTTTGTTTAGGCTATTTGTCTAAGCTTTTCAGCACTGCATCTTGATGATAATGTAGTAAATTTAGTTTACTCCGGCTGTTGGATTTTAGGTAACATAATTGGTAATAGTTGTTGGTCTTTCAAAACTTAGCTGCCTGTGTGACAAGAGCTGCCCCAGAAGTTAACATACATCTAAATTGACCAAGGTTGACATGTCTGTGTTATCTTTTGACTACACTGACCTTTTCCAAATAATTTATCCTTGATACATACTTCCTTTGGATACTTTAGTTCCTGACCAGTGCACTGCTTACATTTTCCCCTTTACTACCACTAATAGGGTGTCGCCTTCTAAGCATCTCCAGCGAAAAAAGAGGTATGCTGAAGCTAAACTGGATCCAGTAAGTCAAGAATTTAAAATGAATGGAATAGAATGTGCTTTCTAAGTATACTTGGCCAGATCGATGGAAAAACTTTTGACATCGAGGAGATGGCTTGTTGTATAGATCCTTTTTCCTTAATGAAAAAGGCAAAGGTGTGTGAGAGACATATTTATCCAGAGAAGAAATTGGAGAGGTCTTGGAGGATCTCAAAAACTGTTGACAATCTTTGTGGTGACAAGACTCAAATAATGATGACCTGTTCGGTTGGTGGAGCTACAATATATCGACTGAGTGGAAATGGTGTAGTGTTAGAAGGCCTAATATTCTCTAAAGTGTCGCAAGGTGTGTAATTTTGAAAACTGCTATATTGAATAGAGGGAAGAGGATGAGAAGGAATAGAAAAGTTTGATCAATCCCTCAAGCTTAGTTGGAAATTATAGTAATTACAAGTACTTACAATTTGGTAAGTGTACAATTCAAGATTAAATCAAATCAGATATAATCTAATTTAATCGCTAATCAAGCTAATAAAATTAAATAAACCCTAATCAGTAGAAATCTTGTCATACCTTAGCACACTAATTTTGTGGAACTCCTTCTTTGTGTTAAAATACAAATTATCTAGTATTGGAGTGAAATATCCCCGAATAGAGCGGGGAATGGAACTGAAGATATATATGACCTTAATTGATCTGATTAAAAAATAGTTGAACAAGTGATCTAGTTATATCTATGATTTACATTTGAATGTTATGAGCGTACTGTGAACATGTCTTTCTTGGTTTTCCTACTTCTAGTGCTTGTGTCAAATATTGATAACACCCAATGATGCCTTGCTTGATTAATAGCTGTAATGTCTTAAAAAGTATATCCTCTCCTTACAGGATGATGATATGACCGTCAAGGAGGAGGATGACAGTGAAATTCTGCACATTACTGCATGGACTGCTATTGGATTTGTCATCTCAGCATCCACATTTCTGGTGCTGCTTTACTTTTTCATGTCTACGTGGTTTGTCTGGCTGCTGATATTGCTTTTCTGTCTCGGTGGAATCGAG</genome_strand>
        <mrna_strand>CTCTTTGGAAAAAGTTTACTCAATCTAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATGATATGACCGTCAAGGAGGAGGATGACAGTGAAATTCTGCACATTACTGCATGGACTGCTATTGGATTTGTCATCTCAGCATCCACATATCTGGTGCTGCTTTACTTTTTCATGTCTACGTGGCTTGTCTGGCTGCTGATATTGCTTTTCTGTCTCGGAGGAATCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U604026" ref_strand="+" ref_description="SGN-U604026 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157360939|emb|CAO70768.1| (e_value=3e-72) unnamed; (*ATH) AT1G79120.1 (e_value=2e-63) | Symbol: None | expressed protein | chr1:29772207-29773448 REVERSE | Aliases: YUP8H12R.26, YUP8H12R_26; ">
      <seq>cattcgtctcactgctctgcaccgtcttatgcataaatgtgtgatggtcttctcgctaattgagtctcgaaaatggttcacagtcaatggaaggcaaagattgtgccatccattgccatatctgagagtagggcatatgtgcatacaaattatgttcaaaaccagtggagggagacctaagaagaaaatgtactatagagtaaatgatctagacagagtcatggagcttcagaaaaaaccatcattgattttacgcttaaaatccataattcaatcacagagaaaacaatgtgtccttcttagagaccttgagaaagaagttggatttgtgcaaaagtggaatttcatgggtattattgaaaaatatcctatgatattccgtgtcaccggtggtaatggaactccaccgatggttatgctgactgaaaaggctgataaaatagcactagaagaagataaagcaagagtgcaaatggaacctattttggtcaagaatctaagggagttgttaatgttgtcggttgattgcacgttgccactggaaaccattcaactgattgagaatgatttgggcttgcctaatgacttcaggcaatcgctgattccaaaatacccacaatttttctcagtgaaagacgtgaatggaanaacatcccttcagttagaaaattgggattcttatctagctgtcactgcccggnnngaangnntg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="+" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="38964" stop="40937"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39264" g_stop="39291" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39292" i_stop="39965" i_length="674">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39966" g_stop="40649" g_length="684"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="712" r_length="684" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="+" ref_id="SGN-U604026" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U604026" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39264" e_stop="39291"/>
          <exon e_start="39966" e_stop="40649"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTCGTCTCACTGCTCTGCACCGTCTTGTAAGTTTCTCTTTTTCTCTTCGATTTCTCTCTAAATTGACCGAAACCCTTGCAATTTACTTGCAATTTGAGTGTATTTAGTAAACTATGAATTCGAGTGAATTTGTTTTTGTTTTCTAATGATGTGTTTGCTCAATTGCTCCAATTTATTGAAGAGCTTCAACTCCGTTGTATTAGTTCATGTTTTTATTTTTTCGTAAATTTAAAGCATGGTATCGTTAATAGTGTAGCTCTAATCTGTGTTTAAGTGTTAACGGTCGAGAAAAAATTGTCCTTTTTTGGGTCATATACAGCTTAAGCTCAATGACACTGTTTAGATCAAATTCCTGTTTTAGACGGATTTAGGGTATTGGAGGTTCCTGGGACCTAGCTACCCGTTTGCGTGGATCCTCTATTTGTATTGAAAATTCCAGTGAATATATAAGAGAAACGGCTTGGGGATGTTGGGTAGTGGCAAAAAGGTAATCTTTTTAAGCGTTGTTGCCCTCTTGGTCAAGGGCGAATCCGTTGGTCGCCACCATGTAGGCATTTTGTTTTTAATTTGAGATGGTTGGGAACCCACAAACTTCACTCTATTTGTAGTTTTCATTTAAGGGAAGACAGTTCTTTTCTCCAAAATCTTATTACGCTTCAATTGTTTAAGCTGAATTGCGCACGTCTCTGTTCTTTTCCAGATGCATAAATGTGTGATGGTCTTCTCGCTAATTGAGTCTCGAAAATGGTTCACAGTCAATGGAAGGCAAAGATTGTGCCATCCATTGCCATATCTGAGAGTAGGGCATATGTGCATACAAATTATGTTCAAAACCAGTGGAGGGAGACCTAAGAAGAAAATGTACTATAGAGTAAATGATCTAGACAGAGTCATGGAGCTTCAGAAAAAACCATCATTGATTTTACGCTTAAAATCCATAATTCAATCACAGAGAAAACAATGTGTCCTTCTTAGAGACCTTGAGAAAGAAGTTGGATTTGTGCAAAAGTGGAATTTCATGGGTATTATTGAAAAATATCCTATGATATTCCGTGTCACCGGTGGTAATGGAACTCCACCGATGGTTATGCTGACTGAAAAGGCTGATAAAATAGCACTAGAAGAAGATAAAGCAAGAGTGCAAATGGAACCTATTTTGGTCAAGAATCTAAGGAAGTTGTTAATGTTGTCGGTTGATTGCACGTTGCCACTGGAAACCATTCAACTGATTGAGAATGATTTGGGCTTGCCTAATGACTTCGGGCAATCGCTGATTCCAAAATACCCACAATTTTTCTCAGTGAAAGACGTGAATGGAAGAACATCCCTTCAGTTAGAAAATTGGGATTCTTATCTAGCTGTCACTGCCCGGGAGGAAAGGTTG</genome_strand>
        <mrna_strand>CATTCGTCTCACTGCTCTGCACCGTCTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCATAAATGTGTGATGGTCTTCTCGCTAATTGAGTCTCGAAAATGGTTCACAGTCAATGGAAGGCAAAGATTGTGCCATCCATTGCCATATCTGAGAGTAGGGCATATGTGCATACAAATTATGTTCAAAACCAGTGGAGGGAGACCTAAGAAGAAAATGTACTATAGAGTAAATGATCTAGACAGAGTCATGGAGCTTCAGAAAAAACCATCATTGATTTTACGCTTAAAATCCATAATTCAATCACAGAGAAAACAATGTGTCCTTCTTAGAGACCTTGAGAAAGAAGTTGGATTTGTGCAAAAGTGGAATTTCATGGGTATTATTGAAAAATATCCTATGATATTCCGTGTCACCGGTGGTAATGGAACTCCACCGATGGTTATGCTGACTGAAAAGGCTGATAAAATAGCACTAGAAGAAGATAAAGCAAGAGTGCAAATGGAACCTATTTTGGTCAAGAATCTAAGGGAGTTGTTAATGTTGTCGGTTGATTGCACGTTGCCACTGGAAACCATTCAACTGATTGAGAATGATTTGGGCTTGCCTAATGACTTCAGGCAATCGCTGATTCCAAAATACCCACAATTTTTCTCAGTGAAAGACGTGAATGGAANAACATCCCTTCAGTTAGAAAATTGGGATTCTTATCTAGCTGTCACTGCCCGGNNNGAANGNNTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U566508" ref_strand="+" ref_description="SGN-U566508 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|157348809|emb|CAO23810.1| (e_value=9e-59) unnamed; (*ATH) AT1G16590.1 (e_value=1e-56) | Symbol: None | mitotic spindle checkpoint protein, putative, similar to Mad2B protein (Homo sapiens) gi:4835900:gb:AAD30290 | chr1:5673788-5674883 FORWARD | Aliases: F19K19.10, F19K19_10; (*SWP) sp|Q9UI95|MD2L2_HUMAN (e_value=9e-11) Mitotic spindle assembly checkpoint protein MAD2B OS=Homo sapiens GN=MAD2L2; ">
      <seq>agagctagacacccggagcttcaacaatatatccattcttctgtcaatggacttcttcctttcatacaaaagggattagttgagagagtggcggtgattttttctggtagcaacaatgtacctatcgagagatttgttttcaagataaatgtaaaccaatcctatggttcaaagttggaggaagctgatctggcgttctctcttaaatcatttttgatcaagcttccattgtcccaatcgttaatgaaggttcttccaccagattacaggtgggagataacagcttacttccgctctctcccgcagagtggtaccagcaaagatgccgaaatttgggtcccaacagatacacagcagtggcagcaagcacctcttataactcctattaagtccatgagtagtgaacctctaggtgtccagctatatcttgaacatccaagtctctctgaaccaaaggcttagaaggaggtcatctcagaggcatttgtcatggatctcttccaacagaattagtaaaggcgtgccaatatcttatcctggtgtggttcctgacatcttcccacttctcataccgttctcttttcaaccatcaactattcgaaactcacttgcctgactaatctggatacagccaagttttcatatcctgcagtggatatagtatatcaaggtagatttgggcatatctgggggcatcaattatgcacagagactcaaataaaacatagttaggtcaccagattatcttgtaaagcttcatttccttacaattacatagagtagtatttaagctggttggccatcattctattcaaaaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="+" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="42188" stop="44019"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42488" g_stop="42559" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42560" i_stop="42861" i_length="302">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42862" g_stop="43051" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="262" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43052" i_stop="43161" i_length="110">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43162" g_stop="43719" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="820" r_length="558" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="+" ref_id="SGN-U566508" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>820</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U566508" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42488" e_stop="42559"/>
          <exon e_start="42862" e_stop="43051"/>
          <exon e_start="43162" e_stop="43719"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGCTAGACACCCGGAGCTTCAACAATATATCCATTCTTCTGTCAATGGACTTCTTCCTTTCATACAAAAGGTGTATTGCATTTCTTTTCAACAGTCCTATAATAGTTAATTGGTCATCTTGGGTACTGGAGCTAATGTGTGAATTGACATTTCTAACTTCCCCCTTCCTCTCGCCACATTGTCCCCCCTTTTTCCTCAGGGGAAAAAACAGAGGAACTTTTTGACATGTCCTTAAACTTATAACAATTTATTGATCTTGTTTATCAGACAAATGCTATTGCTTTTGCAAGGGAAATGAGAGATTGGCACTATAGGCTGTCATTCTTGTGCTATTGTTGTTCTTCAAAAGTAATCATGTTTCTTTTCCTACAGGGATTAGTTGAGAGAGTGGCGGTGATTTTTTCTGGTAGCAACAATGTACCTATCGAGAGATTTGTTTTCAAGATAAATGTAAACCAATCCTATGGTTCAAAGTTGGAGGAAGCTGATCTGGCGTTCTCTCTTAAATCATTTTTGATCAAGCTTCCATTGTCCCAATCGTTAATGAAGGTTCTTCCACCAGGTAAGCTAATTAGGAACTTTATATCAAACGGCACTATAAATCTTCTTAGCTTTTGCAATTAGCCTTTGTGAGAATTCGAAGTGGTTTCCTCAACTTGTTAGCTTTGATAGATTGCAGGTGGGAGATAACAGCTTACTTCCGCTCTCTCCCGCAGAGTGGTACCAGCAAAGATGCCGAAATTTGGGTCCCAACAGATACACAGCAGTGGCAGCAAGCACCTCTTATAACTCCTATTAAGTCCATGAGTAGTGAACCTCTAGGTGTCCAGCTATATCTTGAACATCCAAGTCTCTCTGAACCAAAGGCTTAGAAGGAGGTCATCTCAGAGGCATTTGTCATGGATCTCTTCCAACAGAATTAGTAAAGGCGTGCCAATATCTTATCCTGGTGTGGTTCCTGACATCTTCCCACTTCTCATACCGTTCTCTTTTCAACCATCAACTATTCGAAACTCACTTGCCTGACTAATCTGGATACAGCCAAGTTTTCATATCCTGCAGTGGATATAGTATATCAAGGTAGATTTGGGCATATCTGGGGGCATCAATTATGCACAGAGACTCAAATAAAACATAGTTAGGTCACCAGATTATCTTGTAAAGCTTCATTTCCTTACAATTACATAGAGTAGTATTTAAGCTGGTTGGCCATCATTCTATTCAAAAAGT</genome_strand>
        <mrna_strand>AGAGCTAGACACCCGGAGCTTCAACAATATATCCATTCTTCTGTCAATGGACTTCTTCCTTTCATACAAAAG..............................................................................................................................................................................................................................................................................................................GGATTAGTTGAGAGAGTGGCGGTGATTTTTTCTGGTAGCAACAATGTACCTATCGAGAGATTTGTTTTCAAGATAAATGTAAACCAATCCTATGGTTCAAAGTTGGAGGAAGCTGATCTGGCGTTCTCTCTTAAATCATTTTTGATCAAGCTTCCATTGTCCCAATCGTTAATGAAGGTTCTTCCACCAG..............................................................................................................ATTACAGGTGGGAGATAACAGCTTACTTCCGCTCTCTCCCGCAGAGTGGTACCAGCAAAGATGCCGAAATTTGGGTCCCAACAGATACACAGCAGTGGCAGCAAGCACCTCTTATAACTCCTATTAAGTCCATGAGTAGTGAACCTCTAGGTGTCCAGCTATATCTTGAACATCCAAGTCTCTCTGAACCAAAGGCTTAGAAGGAGGTCATCTCAGAGGCATTTGTCATGGATCTCTTCCAACAGAATTAGTAAAGGCGTGCCAATATCTTATCCTGGTGTGGTTCCTGACATCTTCCCACTTCTCATACCGTTCTCTTTTCAACCATCAACTATTCGAAACTCACTTGCCTGACTAATCTGGATACAGCCAAGTTTTCATATCCTGCAGTGGATATAGTATATCAAGGTAGATTTGGGCATATCTGGGGGCATCAATTATGCACAGAGACTCAAATAAAACATAGTTAGGTCACCAGATTATCTTGTAAAGCTTCATTTCCTTACAATTACATAGAGTAGTATTTAAGCTGGTTGGCCATCATTCTATTCAAAAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U568683" ref_strand="+" ref_description="SGN-U568683 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|112982629|dbj|BAF03493.1| (e_value=4e-107) Ku70; (*ATH) AT1G16970.1 (e_value=4e-89)  Symbol: None | Ku70-like protein, identical to Ku70-like protein GI:12006424 from (Arabidopsis thaliana); contains Pfam profiles PF03731: Ku70/Ku80 N-terminal alpha/beta domain, PF02735: Ku70/Ku80 beta-barrel domain, PF03730: Ku70/Ku80 C-terminal ar... ; (*SWP) sp|O93257|KU70_CHICK (e_value=5e-26) ATP-dependent DNA helicase 2 subunit 1 OS=Gallus gallus GN=XRCC6; ">
      <seq>gcgctgcttaaaagttgctggcttcaggttatgatagtcttttaagcagctcaaaggcttgaagccagcaacttttgtctttcccagtgatgaggaagtggttggaagcacttgtcttttcgttgctctccaaagatcaatgttgcggcttaagcgttttgcagttgctttctatgggaatttaagtcatcctcaattggttgctcttgttgcacaagatgaagtaatgactcctagtggtcaagtcgagccaccagggatgcatctgatttatcttccatattctgatgatatcagacatgttgaagagcttcatactgatcctaattccgtgcctcatgccactgatgaccagataaagaaggcctccgctttagtgagacgtattgacctcaaagatttttctgtgtggcaatttgctaatcctgcattgcagagacattatgcagtattacaagctcttgcacttgatgaagatgagatgcctgaaattaaagatgagactcttccagatgaagaaggaatggctaggcctggtattgtcaaagcattggaggaattcaagctctctgtttatggagagagctataaggacgaggactcaaacattgaaggaaaagctgagccaactaggaaacggaaagcaaatgctataaaagaatatggtaattatgagtgggctgaccttgcagataatgggaagttgaaggacatgacagttgtagaattgaagtattatctaggggcacatgaccttccagtcagtggaaagaaagaagccttgattagtaggatcttaactcacatgggcaagtgagttgtgactttcagatctttggcggtctgccattagtttgtacagaatggttctttttgctgcagcctggtgagtagttagtttttgtttctcgttgaaacttttatgtcttggcattatttatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="-" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="48662" stop="43783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48361" g_stop="48326" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="94" r_length="36" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48325" i_stop="47839" i_length="487">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47838" g_stop="47777" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="156" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47776" i_stop="47192" i_length="585">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.739" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47191" g_stop="47131" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="217" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47130" i_stop="46390" i_length="741">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46389" g_stop="46297" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="310" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="46296" i_stop="46205" i_length="92">
            <donor d_prob="0.709" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="46204" g_stop="46087" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="428" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="46086" i_stop="44984" i_length="1103">
            <donor d_prob="0.878" d_score="1.00"/>
            <acceptor a_prob="0.913" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="44983" g_stop="44881" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="531" r_length="103" r_score="0.990"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="44880" i_stop="44747" i_length="134">
            <donor d_prob="0.926" d_score="0.98"/>
            <acceptor a_prob="0.837" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="44746" g_stop="44575" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="703" r_length="172" r_score="0.988"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="44574" i_stop="44322" i_length="253">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="44321" g_stop="44083" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="704" r_stop="943" r_length="240" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="-" ref_id="SGN-U568683" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>884</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U568683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48361" e_stop="48326"/>
          <exon e_start="47838" e_stop="47777"/>
          <exon e_start="47191" e_stop="47131"/>
          <exon e_start="46389" e_stop="46297"/>
          <exon e_start="46204" e_stop="46087"/>
          <exon e_start="44983" e_stop="44881"/>
          <exon e_start="44746" e_stop="44575"/>
          <exon e_start="44321" e_stop="44083"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAAGCCAGCAACTTTTGTCTTTCCCAGTGATGAGGTGTTCTTTTCAATAATCCACCTTCATTTTTCTTCTTTTGGTTCAGTATATGGTCATTGTTAAAGGTTATTCACAGTCCTCAGGCGTCTTCATTCTCGACAAGCTAAGCTGGTTAATATTGTCCAAATGCTACTAGTTAGATTTTTTTATTTGAAGCACTCTAAAATATGTTAGTTTTGTCAATTTATATTGCTGATAGATGGGATATTGGATTGGATCATTTCACCTTTTAAAACTACATCTAGAAATGAGTCTGATGAGTCAACTTGATTTGTGCTTTATTTCTACGTTTCTATATCTATCTTCATGTCCTTATGGCATAGTTAATCAAATTCAGCTTTTAACAGCTTGGACTATGCAGTACCAATGATTTCTTACCATACAACTTTACCACTTCGATCCATCATTTGGGAATACTTTTCACTATCTCCTATAATATGTCATTTCCATGATGATCAATTCTATTGCTTCTCCTTGGTACTTGCAGGAAGTGGTTGGAAGCACTTGTCTTTTCGTTGCTCTCCAAAGATCAATGTTGCGGCTTAAGCGGTTAGTATGCCTGAAAATTTTGTTAATTTAATTAGCAAACAGGGTTAAGTTAATAGTAGGGAGTGATAAGTTCAGTCTTGCATGTTTTGACCTGTTATCTCTATTTAGAAGTGGCTGGATGCTCTTTTTCTTAGGTAAAAGTCCATCCGTTCTTCATTCAACTGGGTTTTCATTTTCATTTTAGTCACTGTTTATACTGTTTTGTCTATTTAAATACGAAAAATGTGTCTCTAGTCAGCCTTTTGTCTAAAGTAATTCATGCAACTGTTTTGTTGTCTTTCTCTCCTTCTCATTTCACCTTATCTTAGGTAGTTTGAACTACTCTATCAGCATCCCACTGTGCTAAATCTTGTTTGAAGTTGTATATAAGCAGTCTGCAGTAGTGCTAGCTAGCTTTGATCTCAACTATTACGGAAGTGGCACATGTTGCTGACTTACGGACATTTTTCTGCTTGCCTTCTCGCATTAAGATTAGTTTGCAAATGTTTATTTTTGCTCGACTGTAGAAATAAGTTAATAATCTCTCTGTTGCTGTGCTTGCTGAGTGTGTTGCTGTTTTGTGTTTGACTTTAAGTATCATCACAGTTTTGCAGTTGCTTTCTATGGGAATTTAAGTCATCCTCAATTGGTTGCTCTTGTTGCACAAGTAAGACATTGTTTTTCCTCTCCAAATCCTTTCGGATTATATATAGACTAAATCTACCTATTAATGCACCTGTGATTGCGGGGTCAGTGATTGCCAACACCTCTGACATGCACTGAAGGATGTATTGAGTGTGATGGTGAGACAACAATCCAAGTATATAATTTGATACAATCACTAAGAATAGTCTTAACGACTTTATTTGTTCGTGAAATTCAAAAGAGATCTACTAAGAAGTATTAAGTCGGACATTCTTAATCCTTGTGCGATCATAATTTCAGGATTCCAAGAATTAAAAAAACTTCAATTGCTTTTTTGTGTGTTTCACTAATTTTCATGAGAGTTTCTTCTCTCCTTTTTAACAAAATTCTCTTTTCAAATGGCATTGGAGCCTCTGCGATTTCGATAGGGACTTAAGTAGCTTATGCCTACTCGCTTCTCATGCGAGGTGAAAGTTTTCCCTTTTTCGTTTCAGAGTTCAATCACCTCTTTCCTGATCACTTTTTGCAACCATGCATTTTATTTTTTTTGGGGGGGGGGTGTTGGTAACACCAGCACTCTTTTTGATAATTTTTTTCAAGTCCAGCATACCTTGTATAACTTTTTAAGTGCATTCAAACTTCTCAGTGGAAATTGGGTGGAGGGAGTAGCCTTTTTTGGTGTATTCTTTTCTGTGTGAAGTTGTGAATAATGACAAACTTTTACCTGTTGGTCTTCCATTTTCATGGTTTTTGATAAATGCAGGATGAAGTAATGACTCCTAGTGGTCAAGTCGAGCCACCAGGGATGCATCTGATTTATCTTCCATATTCTGATGATATCAGACATGTTGAAGAGGCAGGCAGATTATGTCTTAGTCACAATTGATTTCTTTTTCTATTTTGAAAAATCATGAAGTCTATATCTAACGAATGTGGTTTTACTTGCAGCTTCATACTGATCCTAATTCCGTGCCTCATGCCACTGATGACCAGATAAAGAAGGCCTCCGCTTTAGTGAGACGTATTGACCTCAAAGATTTTTCTGTGTGGCAATTTGCTAATCCTGGTAAGTAATCATAGCTTGGGAAAGGAGATCATTGTTTTGTGCTGCCACTATATATGCAGTTCCGATTCCAAAATGAAGCTTTTTTTTGGTAAGCAAATTATATTATTTACCAAAGGTGGTAGTGTTACATCTCAAGAAGATAAAAACAAACAGAAGAAACCTACTACAAAGAGCCTGCACTGGCTAGTATTTATCCCATGCCAGATGCACCCTGCAGCTCACGTAGACCTCCTAACACCTCGTCCCCAAACAAGCAACATCACTCCGGGTAACAATCCAGTTTAGTCATGTAAGATACTAACTCAGGCACCATTGTAGCTCTATGGAAATCCTCCTGGACAATCTGCCTAATGATAACATGTTGTAGCCTTGTAGATTGCTGAAAAATTCTAAAATTCCTTTCCTACCACACTTGGAACACTGCAGCAGCTAACATCATCTTATAAACACCTGCACCTTTGCTTTTCCCTTTGCAATACCTCTGCGCCCATTGCACTTCATCCTTCCATCCTTGGTTCAATCTTGAGATGCCTTGCCACTGTAATAGCCTTTTCCATATACTACCAGTTACTGGGCAACTAAAGAATAGGTGTTGAATGGGCTGATAATTTACGAGGTGAGATATAAGCCTTTCTGGAGCTTGATGTTACCGTTGGGTTGGACTAACTGATCCATCTCTTTGTTGATCAAATGAAAAGTAATAAGTTCAATTATAGGGTGGACATCCAAAAGAAGCAAAGTTTTTGATGTAATTTGTTAAATATTTCCAGGTAGTTAAAATGTAAATTGCTGAATCTACTTATTAACTTCAAAAAGGGACTTTCAAACACAAGTCTTGCAAAGGTGTTTAATTTATGTTCCAGTGCTTCATATCTTAAAGCAATTAAATGATGCAAAGCAAAGGGTCATCGCTTCATACGTGAAGTCATGCACTTGAAAAGAATTTTCGCTTCAAACAATGACTTGCAGAGTTATTTCATTGGACACCCTTCCAATTGACGTGCACTCATAATTTTTACAGAACTGTATGAAGTGGAATGCCCCTTATATATAGAAGTGGAGTACCCTTTCCATTTGTATTCTTACAAGATTGTTTCTTGCAGCATTGCAGAGACATTATGCAGTATTACAAGCTCTTGCACTTGATGAAGATGAGATGCCTGAAATTAAAGACGAGACTCTTCCAGATGAAGAAGGAATGGCTAGGTAGTGATGAATTTCCACCATCTTAGGTCCCTTTAGTCTGTGGTTTTGGTCCTTTTTAGTCTTCAACTTGCCTCTTATGTTTAGAAAATTTGTTATTCTGAATTTCCTTTGCTTGTATCTTGTTTGGGTGCAAGGCCTGGTATTGTCAAAGCATTGGAGGAATTCAAGCTCTCTGTTTATGGAGAGAGCTATAAGGATGAAGACTCAAACATTGAAGGAAAAGCTGAGCCAACTAGGAAACGGAAAGCAAATGCTATAAAAGAATATGGTAATTATGAGTGGGCTGACCTTGCAGATAATGGGAAGGTAACATTGCCAAGCTTATGATGTTGTGCTATATATATGTTGCCTCAGTTCTGGGCTTTATAACAGATCCAAAATGTAATCAATCTATAATATATGAGGTGATGTGGTTTGGGTCAGATAAATTTGTTGGAACAATTAGTGCTTCAAGTGAATGAGAAGCTTTTAGTGAGATGGCAAGAAGAATACTTTCATAAAATTTCATTTGATTTCTTATTATATATGTATTTCACTTCTTTTTGTTGCGATTTTGCAGTTGAAGGACATGACAGTTGTAGAATTGAAGTATTATCTAGGTGCACATGACCTTCCAGTCAGTGGAAAGAAAGAAGCCTTGATTAGTAGGATCTTAACTCACATGGGCAAGTGAGTTGTGACTTTCAGATCTTTGGCGGTCTGCCATTAGTTTGTACAGAATGGTTCTTTTTGCTGCAGCCTGTTGAGTAGTTAGTTTTTGTTTCTCGTTGAAACCTTTATGTCTTGGCATTA-TTATGG</genome_strand>
        <mrna_strand>TTGAAGCCAGCAACTTTTGTCTTTCCCAGTGATGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGGTTGGAAGCACTTGTCTTTTCGTTGCTCTCCAAAGATCAATGTTGCGGCTTAAGCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGCAGTTGCTTTCTATGGGAATTTAAGTCATCCTCAATTGGTTGCTCTTGTTGCACAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAAGTAATGACTCCTAGTGGTCAAGTCGAGCCACCAGGGATGCATCTGATTTATCTTCCATATTCTGATGATATCAGACATGTTGAAGAG............................................................................................CTTCATACTGATCCTAATTCCGTGCCTCATGCCACTGATGACCAGATAAAGAAGGCCTCCGCTTTAGTGAGACGTATTGACCTCAAAGATTTTTCTGTGTGGCAATTTGCTAATCCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTGCAGAGACATTATGCAGTATTACAAGCTCTTGCACTTGATGAAGATGAGATGCCTGAAATTAAAGATGAGACTCTTCCAGATGAAGAAGGAATGGCTAG......................................................................................................................................GCCTGGTATTGTCAAAGCATTGGAGGAATTCAAGCTCTCTGTTTATGGAGAGAGCTATAAGGACGAGGACTCAAACATTGAAGGAAAAGCTGAGCCAACTAGGAAACGGAAAGCAAATGCTATAAAAGAATATGGTAATTATGAGTGGGCTGACCTTGCAGATAATGGGAAG.............................................................................................................................................................................................................................................................TTGAAGGACATGACAGTTGTAGAATTGAAGTATTATCTAGGGGCACATGACCTTCCAGTCAGTGGAAAGAAAGAAGCCTTGATTAGTAGGATCTTAACTCACATGGGCAAGTGAGTTGTGACTTTCAGATCTTTGGCGGTCTGCCATTAGTTTGTACAGAATGGTTCTTTTTGCTGCAGCCTGGTGAGTAGTTAGTTTTTGTTTCTCGTTGAAACTTTTATGTCTTGGCATTATTTATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U587875" ref_strand="+" ref_description="SGN-U587875 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|112982629|dbj|BAF03493.1| (e_value=4e-86) Ku70; (*ATH) AT1G16970.1 (e_value=9e-79)  Symbol: None | Ku70-like protein, identical to Ku70-like protein GI:12006424 from (Arabidopsis thaliana); contains Pfam profiles PF03731: Ku70/Ku80 N-terminal alpha/beta domain, PF02735: Ku70/Ku80 beta-barrel domain, PF03730: Ku70/Ku80 C-terminal ar... ; (*SWP) sp|O93257|KU70_CHICK (e_value=1e-24) ATP-dependent DNA helicase 2 subunit 1 OS=Gallus gallus GN=XRCC6; ">
      <seq>ggaagatctgaacgaccagcttaggaaacgcatgtttaagaagcgcagagttcgaagacttcgacttgtaatttttaatggattatctatcgaacttaacacctatgctttgatccgtccaactaatccagggacaattacttggcttgattcgatgactaatcttcctttgaagactgagagaaccttcatatgtgctgatactggtgctatagttcaggagcctctaaaacgctttcagtcttacaaaaatgagaatgtcatcttttctgcggatgagctttcagaagtcaaaagagtttcaactggacatcttcgtctgttgggcttcaagcctttgagctgcttaaaagactatcataacctgaagccagcaacttttgtctttcccagtgatgaggaagtggttggaagcacttgtcttttcgttgctctccaaagatcaatgttgcggcttaagcgttttgcagttgctttctatgggaatttaagtcatcctcaattggttgctcttgttgcacaagatgaagtaatgactcctagtggtcaagtcgagccaccagggatgcatctgatttatcttccatattctgatgatatcagacatgttgaagagcttcatactgatcctaattccgtgcctcatgccactgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="-" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="53449" stop="45865"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53150" g_stop="53020" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53019" i_stop="52931" i_length="89">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.806" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52930" g_stop="52887" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="175" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52886" i_stop="49919" i_length="2968">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49918" g_stop="49842" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="252" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49841" i_stop="48474" i_length="1368">
            <donor d_prob="0.612" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48473" g_stop="48326" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="400" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48325" i_stop="47839" i_length="487">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47838" g_stop="47777" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="462" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47776" i_stop="47192" i_length="585">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.739" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47191" g_stop="47131" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="523" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="47130" i_stop="46390" i_length="741">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="46389" g_stop="46297" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="616" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="46296" i_stop="46205" i_length="92">
            <donor d_prob="0.709" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="46204" g_stop="46165" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="617" r_stop="656" r_length="40" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="-" ref_id="SGN-U587875" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U587875" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53150" e_stop="53020"/>
          <exon e_start="52930" e_stop="52887"/>
          <exon e_start="49918" e_stop="49842"/>
          <exon e_start="48473" e_stop="48326"/>
          <exon e_start="47838" e_stop="47777"/>
          <exon e_start="47191" e_stop="47131"/>
          <exon e_start="46389" e_stop="46297"/>
          <exon e_start="46204" e_stop="46165"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGATCTGAACGACCAGCTTAGGAAACGCATGTTTAAGAAGCGCAGAGTTCGAAGACTTCGACTTGTAATTTTTAATGGATTATCTATCGAACTTAACACCTATGCTTTGATCCGTCCAACTAATCCAGGTCTGCCTTTTTTATCCCATCTTTTATTAGGTAATGATTAACGTGAGGCGACTATAAGTAAACGCTATGCCCTTATTATTTTTCTGTAGGGACAATTACTTGGCTTGATTCGATGACTAATCTTCCTTTGAAGGTACTTTTTAGCTTCGTCGTCATGCTTTGTTTTAACCTTGTTTCTTCTGTTCTTTGGAAGTTCCTTATCAATTTTGTTGTGTTTATGTATGTCTCTTGTTTAGTGGGAGGGGGATTAAGAGAATTATTGTTCATAACTAACCTTTGCACTTCTTGGGGTTTTGATTTTTATTAGTTCTGATTGTAATGGATTTGGAGCAATCTTTTGTTTATTCGTTGAGGGTTCATTGTTGTTTTCTTTCTTACGGTCATTTCGTCCAAAGAAAAATCTCATTTGACCATCTATCTTTCAATATATTTGTCAGCCTTTGTAGCTATACATTTTTGTGAAAGAGCCAGTATAAGTTTTTCATTTCACTTCTCTGTACATCCCAATTATACAACAATTTTTTTGGTTTTCCTTGCCGACCAGTCATGTGAAGACACTCTTAGGTCAATGAATATCCTAAGGAGCCAATGAATCCGTAGTTAAACAAACAGGGAACCTTGTAAGAAAATTGTCAGGATATTTATCAAAAATGTTGTTATTTACCAAACAAATCCTTCTATAGCATTTTAGGCGCTCGTATTTCTAATACTATAAGTTTTCTTAGTTCACATTCTATCTTGAAAAAATAATATAGAATCCCGTTATATGTTATTTATGCGACTTATGTGATTATAGGGGAATTAAACAGTGTTACCATTGTAATGCATTTATAGTAATGCAAAGTTTTATACCACAAACTAAATAGTGGTTTTTTTTTAAAGAAAGGTGACGTTTACTTCTATATATCTACAGGTATACTACATTAAAGTGTAGTCCCCCTCCAAAAAGTTCTACTTACATCATTCCTAGGATCTTTTAGTTACAGCCAATCAATAACACATCTTCAATAACTCCTATCACTACTGCTTGCACTAAAATAGTATAGTTCTAGGCAGTTCGTCTTTATCTTCTGAATATTGTTCTGAATTCCTAAAAAACATCTTTGATTCCTTTCCCTCCAAATTTCCACCAAATGCAAGCGGGGAAATCCTCCATCTCTTCTCTTTTTTTTCTCCTGCATTTTCATTCATGTTCCAGCATTGTAGGACTTCTATAATTCTCCCTGGCTTTGTCCACTTGATCTTCCTCTTGCGGATGAACATCTGCCATGATTGATCTGTCCATTTGCAGTGTAGAAAGAGAAGGTTGACCGTCTCCACCTGTTTTTCACATAGATAGCATCTAGAACACAGATTAGATTCCTCTTGTTCAAGTTCTCATGTGTCAAGACTGCCTCCTTTATCAAGAGCCATGTGAAGTAGTTCACCTTGTAGGGAATTTCTGTTCTCCAGATCATCCTCCAGGGCCATCCTGTTTGCTGCACCTCAGTAGAACTGAGTTCTCTGTATGCTGATTTTACAGTGAATTCTCCCCCCCTCCTCCCCTTACATAATAGTCCATGTTCCTCTCCTGTCAGATTGGTAGCCATATGCATTGTGTGATGAAATTCTTGTTATGGTTGTCATTTCCTAATCATTTAGGTTCCTTCTTAGAAACAGGTTCCACCCTTGTCCTGTCCATAATTCTGCGATTGTTTTTATTTGTGCTTGGTTCAGGCTATGTAGCACAGTGAAAGCATGTTTGAGTGTCTCCTTTCCACACCAAATGTCATTCCAGAAAGCTACTTTTTCTCCACTGCCCACCTTACAACTTGTTCTCTCCCTGACTTGTTGCCATAGGTTCCTGATAGATCTCCCATACACTACAATTATAAGGGTTGGTCACCACATCTGTCATCCATTTGTTCCTCCATGCCATATTTTTCTATTATTACTTCCTTCCATAGAGATACTTCTGGTGAGACAAATTTCCACAGTCAATTCATCATCAAGCTCTTGTTTTGGGTAATCAGCTTTCTAATCTAAATGTTTTGTTTTATATTGATTACTACACTGAAATTACTATGTATTATACAGGTAATCAAACAAGCTCGTAGAGCTGATGTAGTTCATTGGAGAAGTTATTGTGTCTACTAGGTCTGTTAGATCTAGGACATAAGTTTTACTAAATGAGAAGAGTATTATAGTTGAAACTGAAATTTTTTTGTGAAAGTTAAAGATGTGTTCGAGAATGAATGGAGAAGTATTTTGTGGTCGTTGAAGATTTGAGATTAGAAACCTGTGTTTCACTTGAAATACACCTTTAAACCAATACCTCAATCTTTCACCTAGCGTTCAAATGCTTATATATTTATGGCCGAACATGTTTTTGCAAATACTGATGTGCCGTATTTGTAAATATTGAAATATTATGACAAACCGGCCCTTGGTTTTAGAATGAAATAGTTTCAGCCTAGAGCGGGTTGGACATAGAGGATTGTTATAGCTGGCCCCAATGAGTTTGAGATTGAGGAGGAGTTGATTGGTTTGGTTTTTATGTAGAGTCTAAGCATTTAAATTTGTATAATGTTTGCATAGTAGAAGATAAAAAACAGTTGGGGGCTGTAGGTGAGAGAGGGTATGCTGGGAAACATTTATGTATAACATAGTTGAAATTGGATAGACTGTTATACATAATGGGATTAACTTCGGGGTGGGCTGTATGTTGGGAAGGTGTTACAGGTGGTTGTGGAGCTACATAATGTCTCATATAGGATATTTTTTTTCAACAAAAAGAAGACTCAACTTCGTATAAGGAATTTCTAAACGTCTGAGCTGTTCCATTGCCTTGTATTGTTTTGTTGGACGCTCAAATTCAACACATGTTTCATGCATGGAGCGACAATAAGTTTTTGCCATGTTATTTTAATATATGGTTAGTTATTGAGGAATTTTGTGTCAGCTTGTTTCTGAATCCCACTTACTAGGGAAAGTCGCCATTTCTAAGTTGTCATTTATCATTGAAGTTGGTAGAAAAGTTGATGAAATGTCAGTTCTGGTTTGTGTTGGGATTTGGTATAAAGCAAGTCTTTAACCTCTTCTATGTTCTTCCTTGTTTACAGACTGAGAGAACCTTCATATGTGCTGATACTGGTGCTATAGTTCAGGAGCCTCTAAAACGCTTTCAGTCTTACAAAAAGTCGGTATCTGTTTCTTAAAAGAATGACTCCCTCTTCTTCTACTCTGAATCTAGATTTCTCTCTTCAATTATTCTTATTTTAGATAAATGTGTGTGGCGGCATTTTTCATGTTTCTTCCAAATCTTCTTATTATGTGTGTGTGTGTGTGTGTGCATATATATATATATATATATATTTATTTATTTATTTTAAAAAATATTATTTTTGGACAAATTATCTTCTTATTATATATATTTAACAATTTAATATGAAACTGCAAATTACTTTTTCTAGTGTTTAATAAATTGGGAATTGGAAATCAATTTGTATCGGAGTACCATTCTATGGCCTACAATTATATTTTACTGATGATCATTTTGAGTGCTTTAATTAAAGTTGTCATTATGAATGTTGAAATTAGTCAGTCTAGCTACAATGTGATGTTACAGGTACTGAATTCATGCATGTTAGTTAAACCTTTTATTTTTGAAAATCCTGCACTACCCTTTGAAGAAGTGTAAGTTCTCTTCTCTTTTCTTAATGCTCCATATGTTTTGTTGACTTTTTTGCTTTGTCCTATAAAAGACTGAAGAATATTATGTTATTAATGAAGTGGTGGGAGAACCATGAGGTTTCAGTTTCATTAGAGATAAAATAAACACAAGGTGATATTTCCTCATTTGCCCAAGCCTTGGGGGAATACCTGATAAGAGTACTGGCAGGATGTAGTAGATATTAGATGAAATTAGTCAAGGTGCACACAATCTGACCATATACCACCATCATAAATAGAATGTGCCATATTTCAGAACCCAAAAAATTGTAGGAGACCTTCCCTATTTCACGTTACTCAACCTCCTATATCCTATTTAGAGAGTGTTCCCATATCTTGTCAACAATCAATTTCAGTAAAACTTTTTCACTTCCAACGGGTAGAGTGAATTATTATTTGTTTCTTTGGAAACACTTCAAAATTTAACCTCTAACGATAGCTCGTACTACCAGAAGATAGTAAAAAAGACAAAATCAAAGGAAGAACAATCTCTTTATAGATTATCCATAGAGAAGTCAAAACATTACCAAGCCTCTCCACAGACTATATTAGTATTCAGCTCCTAACAGTGCTCTTTTGTTGCATTTTGTCCAATTTTTTCTGATTAATTCAAGAGAATATGGATAGATTGTAACATGGAACGGGGTGTTAGATCCTCATCATTTATGTATTGAAAAAGATTATGTAGTGAACTTGGATATCCTAGAAGAAATTCACATTTGAGTTTCCTTGATTTGCTAAATTTTGCTTCACTGAATTACCAAATGACCAGCCCAACTCAACTCTGGTAGACTTATTCAACCGTTCACTGATGTCTTGTGCCTTTTTGTTTCAGTGAGAATGTCATCTTTTCTGCGGATGAGCTTTCAGAAGTCAAAAGAGTTTCAACTGGACATCTTCGTCTGTTGGGCTTCAAGCCTTTGAGCTGCTTAAAAGACTATCATAACCTGAAGCCAGCAACTTTTGTCTTTCCCAGTGATGAGGTGTTCTTTTCAATAATCCACCTTCATTTTTCTTCTTTTGGTTCAGTATATGGTCATTGTTAAAGGTTATTCACAGTCCTCAGGCGTCTTCATTCTCGACAAGCTAAGCTGGTTAATATTGTCCAAATGCTACTAGTTAGATTTTTTTATTTGAAGCACTCTAAAATATGTTAGTTTTGTCAATTTATATTGCTGATAGATGGGATATTGGATTGGATCATTTCACCTTTTAAAACTACATCTAGAAATGAGTCTGATGAGTCAACTTGATTTGTGCTTTATTTCTACGTTTCTATATCTATCTTCATGTCCTTATGGCATAGTTAATCAAATTCAGCTTTTAACAGCTTGGACTATGCAGTACCAATGATTTCTTACCATACAACTTTACCACTTCGATCCATCATTTGGGAATACTTTTCACTATCTCCTATAATATGTCATTTCCATGATGATCAATTCTATTGCTTCTCCTTGGTACTTGCAGGAAGTGGTTGGAAGCACTTGTCTTTTCGTTGCTCTCCAAAGATCAATGTTGCGGCTTAAGCGGTTAGTATGCCTGAAAATTTTGTTAATTTAATTAGCAAACAGGGTTAAGTTAATAGTAGGGAGTGATAAGTTCAGTCTTGCATGTTTTGACCTGTTATCTCTATTTAGAAGTGGCTGGATGCTCTTTTTCTTAGGTAAAAGTCCATCCGTTCTTCATTCAACTGGGTTTTCATTTTCATTTTAGTCACTGTTTATACTGTTTTGTCTATTTAAATACGAAAAATGTGTCTCTAGTCAGCCTTTTGTCTAAAGTAATTCATGCAACTGTTTTGTTGTCTTTCTCTCCTTCTCATTTCACCTTATCTTAGGTAGTTTGAACTACTCTATCAGCATCCCACTGTGCTAAATCTTGTTTGAAGTTGTATATAAGCAGTCTGCAGTAGTGCTAGCTAGCTTTGATCTCAACTATTACGGAAGTGGCACATGTTGCTGACTTACGGACATTTTTCTGCTTGCCTTCTCGCATTAAGATTAGTTTGCAAATGTTTATTTTTGCTCGACTGTAGAAATAAGTTAATAATCTCTCTGTTGCTGTGCTTGCTGAGTGTGTTGCTGTTTTGTGTTTGACTTTAAGTATCATCACAGTTTTGCAGTTGCTTTCTATGGGAATTTAAGTCATCCTCAATTGGTTGCTCTTGTTGCACAAGTAAGACATTGTTTTTCCTCTCCAAATCCTTTCGGATTATATATAGACTAAATCTACCTATTAATGCACCTGTGATTGCGGGGTCAGTGATTGCCAACACCTCTGACATGCACTGAAGGATGTATTGAGTGTGATGGTGAGACAACAATCCAAGTATATAATTTGATACAATCACTAAGAATAGTCTTAACGACTTTATTTGTTCGTGAAATTCAAAAGAGATCTACTAAGAAGTATTAAGTCGGACATTCTTAATCCTTGTGCGATCATAATTTCAGGATTCCAAGAATTAAAAAAACTTCAATTGCTTTTTTGTGTGTTTCACTAATTTTCATGAGAGTTTCTTCTCTCCTTTTTAACAAAATTCTCTTTTCAAATGGCATTGGAGCCTCTGCGATTTCGATAGGGACTTAAGTAGCTTATGCCTACTCGCTTCTCATGCGAGGTGAAAGTTTTCCCTTTTTCGTTTCAGAGTTCAATCACCTCTTTCCTGATCACTTTTTGCAACCATGCATTTTATTTTTTTTGGGGGGGGGGTGTTGGTAACACCAGCACTCTTTTTGATAATTTTTTTCAAGTCCAGCATACCTTGTATAACTTTTTAAGTGCATTCAAACTTCTCAGTGGAAATTGGGTGGAGGGAGTAGCCTTTTTTGGTGTATTCTTTTCTGTGTGAAGTTGTGAATAATGACAAACTTTTACCTGTTGGTCTTCCATTTTCATGGTTTTTGATAAATGCAGGATGAAGTAATGACTCCTAGTGGTCAAGTCGAGCCACCAGGGATGCATCTGATTTATCTTCCATATTCTGATGATATCAGACATGTTGAAGAGGCAGGCAGATTATGTCTTAGTCACAATTGATTTCTTTTTCTATTTTGAAAAATCATGAAGTCTATATCTAACGAATGTGGTTTTACTTGCAGCTTCATACTGATCCTAATTCCGTGCCTCATGCCACTGATG</genome_strand>
        <mrna_strand>GGAAGATCTGAACGACCAGCTTAGGAAACGCATGTTTAAGAAGCGCAGAGTTCGAAGACTTCGACTTGTAATTTTTAATGGATTATCTATCGAACTTAACACCTATGCTTTGATCCGTCCAACTAATCCAG.........................................................................................GGACAATTACTTGGCTTGATTCGATGACTAATCTTCCTTTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGAGAGAACCTTCATATGTGCTGATACTGGTGCTATAGTTCAGGAGCCTCTAAAACGCTTTCAGTCTTACAAAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGAATGTCATCTTTTCTGCGGATGAGCTTTCAGAAGTCAAAAGAGTTTCAACTGGACATCTTCGTCTGTTGGGCTTCAAGCCTTTGAGCTGCTTAAAAGACTATCATAACCTGAAGCCAGCAACTTTTGTCTTTCCCAGTGATGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGGTTGGAAGCACTTGTCTTTTCGTTGCTCTCCAAAGATCAATGTTGCGGCTTAAGCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGCAGTTGCTTTCTATGGGAATTTAAGTCATCCTCAATTGGTTGCTCTTGTTGCACAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAAGTAATGACTCCTAGTGGTCAAGTCGAGCCACCAGGGATGCATCTGATTTATCTTCCATATTCTGATGATATCAGACATGTTGAAGAG............................................................................................CTTCATACTGATCCTAATTCCGTGCCTCATGCCACTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U567086" ref_strand="+" ref_description="SGN-U567086 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|112982629|dbj|BAF03493.1| (e_value=5e-95) Ku70; (*ATH) AT1G16970.1 (e_value=5e-87)  Symbol: None | Ku70-like protein, identical to Ku70-like protein GI:12006424 from (Arabidopsis thaliana); contains Pfam profiles PF03731: Ku70/Ku80 N-terminal alpha/beta domain, PF02735: Ku70/Ku80 beta-barrel domain, PF03730: Ku70/Ku80 C-terminal ar... ; (*SWP) sp|P12956|KU70_HUMAN (e_value=9e-20) ATP-dependent DNA helicase 2 subunit 1 OS=Homo sapiens GN=XRCC6; ">
      <seq>ttgttcaataaaatcttcgatatgtcaatggacctcgacccagatgaagtcttccgtgatgatgaagatgaccctgaaaatgaattcttcaaggaaagagataatactaaggagttcttggtatatcttgtggatgcttcacctaaaatgttttcctctacttgcccaacggatgatgaaaagattgcaactcattttcaagttgccgtcagctcaattgcacagtctctcagaactcagattattaataggtcttatgatgaagtttctatatgcttctttaacactcggggaaaaaagaacttgcaggacctaagtggcgtttatgtatttaatgtccgagaaagagaggatctggacagaccaacagctaggctaattaaagaatttgatcaaatagaagaaagatttgaaaaagaaataggaagtaagtacggcattgtgcctggctctcgtgacaattctctttacaatgctctttgggttgcacaagcccttctccgtaaaggatctgcaaaaactgctgataaacgtattctcttgcttacaaatgaagatgatccttttggtaatctcaaaggtgtcatanaagtggatatgatgaggacaacgatgcagcgtgccaaagatgctcaagatcttggtattacaattgagcttcttccactaagccggccagatgatgagttcaacgtttcccttttttatgctgatttacttggnctggnngngatgaccnngctcagttcnnnctctganagganaanggtttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="-" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="58679" stop="54735"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58379" g_stop="58287" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58286" i_stop="58109" i_length="178">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58108" g_stop="58031" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="171" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58030" i_stop="57017" i_length="1014">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57016" g_stop="56900" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="288" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56899" i_stop="56387" i_length="513">
            <donor d_prob="0.865" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56386" g_stop="56272" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="403" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56271" i_stop="55602" i_length="670">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="55601" g_stop="55496" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="509" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="55495" i_stop="55414" i_length="82">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.424" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="55413" g_stop="55296" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="627" r_length="118" r_score="0.992"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="55295" i_stop="55123" i_length="173">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="55122" g_stop="55039" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="628" r_stop="711" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="55038" i_stop="54966" i_length="73">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.76"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="54965" g_stop="54907" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="712" r_stop="768" r_length="57" r_score="0.763"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="-" ref_id="SGN-U567086" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>770</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U567086" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58379" e_stop="58287"/>
          <exon e_start="58108" e_stop="58031"/>
          <exon e_start="57016" e_stop="56900"/>
          <exon e_start="56386" e_stop="56272"/>
          <exon e_start="55601" e_stop="55496"/>
          <exon e_start="55413" e_stop="55296"/>
          <exon e_start="55122" e_stop="55039"/>
          <exon e_start="54965" e_stop="54907"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTCAATAAAATCTTCGATATGTCAATGGACCTCGACCCAGATGAAGTCTTCCGTGATGATGAAGATGACCCTGAAAATGAATTCTTCAAGGTAAGCCCCCTTAACCTTTTTTGTTTGTTTTTTTAAAAAATTAGTGGAAATGGGTAAAATAAACATGCAGGAAAGAGATTCCTATAAGGAATTATTATGATTTTTCACTTTCTTGTTTGGGCTAAGATTGATTATCAAGCTCTTTGATATTTTTTATTTATCAAAACTAAACATTCAGGAAAGAGATAATACTAAGGAGTTCTTGGTATATCTTGTGGATGCTTCACCTAAAATGTTTTCCTCTACTTGCCCAACGGTTAGTCCTTTTTACCAGCTGTTTTTGTCATTTTGATTGATTTTGGTCATTTCCCGTTACTTCACTTCACTTCAAACTGATGAAGTTGACTTATTTCACTGTTAATTTCTGTTAGACATTAATTTATAATCTGATCGAGTAGAGTTCAAGGTGCCTTATCATTACATAGTAGTAAAGTCAGGTCCATTCATGTTTTGACCTCTTGGTCCATGCTCCAGTAGGACCTGGGCGTAAAGGGGTTGGTTGGTTAGAGTTGGCTTGATTTTCACATTTATTGGGGAATGGACCAGCGGTCTGCTTATATAGACTTGATCAATCACTCCCTCTTGAACTAACTTTTGGCGTTGCAAAGCACCACAATTAGGAGTTGTTTTTTCTGGAAAGGGACATCTCCTTGATGTTGGATTTCTATTGCTTTTTGTTAAATGGTAATGTGCATTTTAAGCTGTATGGTTAACAAACTGTTCATTTGGTAGAGATGAATAGAGAGACTTGGTGATAAGTTATTAAGCTAATAAAGATGGAACTTATATTAGAAGTCTAATTTATTATTATATAGAAAGGCATTTCTTGCAAAGCACATTTTTTTTTGAAACTTGTAATGAATATATATATTACAGTTGCACCATAACAGGGCAAAAGGACTTTACAAAATCCCAACCAAGCTTAAGCTACTGCTTCCCGAGGATCCTATCATATTAATAATCAACTAGTGATTAACCTTCTTAGCATATCTTTCAAAGCACAATTGTTAAAATGGTTCATGCGATATTCCTGGTGTCTTGTTGGTGTAATTTGAACTTGCTAGCTGGAGCTTGGAGGAACGAAAGGCTTAATTGGGCTAACAGCAGGTTCCGAATCAATATTTGGCACCTTGTTTGTGTTACTTTCATTAAAATATTCTAAAGGGATCCTAGGAGGCCTATTTTTCTTAAAAGCATCTTCTCAATTTCCTTTAGCATTTTCACCTTTTGATTGTAAATGTGGAATCCCACTCTTTCTTCATTTTTGCAGGATGATGAAAAGATTGCAACTCATTTTCAAGTTGCCGTCAGCTCAATTGCACAGTCTCTCAGAACTCAGATTATTAATAGGTCTTATGATGAAGTTTCTATATGCTTCTTTAACACTGTAAGCCCTTGTTCTCTAAAAGCTGTGACTTTGACAACCCTTTTATGATAATATCCTTAATCTCTGCTTTTCTCTATCTACAAAATTATTTCAGAGTTATACACCCCCCCCCCCACCCCCCAAAAAAAGAGGAAGAAAACAAAAAAATTAAATCCTGATGAATTAAGCTTTGCTGGACCTTCTTTTCCACCTTGGTTGTAACTTGAGAATTCTGTGTGGATTTGTATTTTTCTTTACTTGTGGGATCGAAGTCTTCCTTGTACTATATAAGTTTGATCAAATACTATTTAGGTGGGCCAGATGTATGTGCTCTTGTTATGCAGCAGACTAGGTGGGTTAAAATCTACTTCTATCAAGGCAAATTTGTTTTTGCTATTTCCCCCCTAATTAACACCTGTTTCAAGTTTTTGTTTGCTATTATTAGTATTTCCAAATTTTGATAAGGAAAAACCAAATTAGAGAATTTGTTTTTAGGTGATAATTTTTTCTTATGTTCTTTTTGTGTGATTTCAGCGGGGAAAAAAGAACTTGCAGGACCTAAGTGGCGTTTATGTATTTAATGTCCGAGAAAGAGAGGATCTGGACAGACCAACAGCTAGGCTAATTAAAGAATTTGATCAAATAGAAGGTAAATCATCATATTGGTCTCTAATTTAATTTTTGGTGGGCGTGTAGTATTGCACCTTTCTCTGTTTTGACTAGATTCAACATTGGTCCTCAATTTGCTTCATCATAGTCACATCATTACAGTCAAGATGCGCATAAGCAAAGTGACTCGTGCCAAGTTGTCGTATCATCATTTCGTCTTTTTTTCCCTTGTAAATATGAGCTGTTTCTCAGACTTAAGAGGAAAACTCATCCATGAAGGTGCTCTTAATTTTTCTTCATTAGCAACTTTAACTCCACACTTAAATTTCAGTTTTTGCAGTTAAACCTTAGTGCTTCCTATACTTTGCACTCTGAGGACTCTGGCTTGTTGTCAATCTTCCTAAAGGAACATAGGCTCTTGAATATATGTAGAAGCAGTCATTTTTACTGACTCTTCACAATCGTCTTATGGAGTACTTTATTAGTCCTTGTTTGACCAGCAAACTGGAAAACCCTAAAATGATGTTATTTCATACTTAATTAATAATTATGCGTAGAATTTTCTGCTATGTCAAAATGGACTAAGAATTCATCCTCTATACAATCAGTTAAATGTCTTGCCTCATCAATGAATAAACTCAAGGAAAAACAGTGTGAACTTTTTTGGTTTTTAGACTTGTACTGCAATTACCTGTTTAATTTGTTTGCAGAAAGATTTGAAAAAGAAATAGGAAGTAAGTACGGCATTGTGCCTGGCTCTCGTGACAATTCTCTTTACAATGCTCTTTGGGTTGCACAAGCCCTTCTCCGTAAAGGGTAAAATTTGCTCATTTCCTTTTTGTTTTCCCCTGAAATGATGTGCACCCTCTTCATTTACTGGTGTTCAAACCATTTCCAGATCTGCAAAAACTGCTGATAAACGTATTCTCTTGCTTACAAATGAAGATGATCCTTTTGGTAATCTCAAAGGTGTCATAAAAGTGGATATGATGAGGACAACGATGCAGCGTGCCAAAGTATAGTATCTTGCCACATATTTATATATTAATATTATAGTCAGTTGAAAACAAGTCCCAAAAGAAAAAGTAAATTTATGTGAAGATAAATAACTCTGAGTGACTGTGATTGTTTTGTGACTTCTTGAACGATTATTACACAATTATTCTACTCATAGCGCTAATGGTTGCAGGATGCTCAAGATCTTGGTATTACAATTGAGCTTCTTCCACTAAGCCGGCCAGATGATGAGTTCAACGTTTCCCTTTTTTATGCTGTATGACCATTATTTATTTTTGAGATCCTTTGTTGCATGTTGTTATTATCTAATTCTAGATCTTTGGCTTCAGGATTTACTTGGTCTGGAGGGTGATGACCTTGCTCAGTTCAAAGCTCTGATAGGAGAAAG</genome_strand>
        <mrna_strand>TTGTTCAATAAAATCTTCGATATGTCAATGGACCTCGACCCAGATGAAGTCTTCCGTGATGATGAAGATGACCCTGAAAATGAATTCTTCAAG..................................................................................................................................................................................GAAAGAGATAATACTAAGGAGTTCTTGGTATATCTTGTGGATGCTTCACCTAAAATGTTTTCCTCTACTTGCCCAACG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATGAAAAGATTGCAACTCATTTTCAAGTTGCCGTCAGCTCAATTGCACAGTCTCTCAGAACTCAGATTATTAATAGGTCTTATGATGAAGTTTCTATATGCTTCTTTAACACT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGGGAAAAAAGAACTTGCAGGACCTAAGTGGCGTTTATGTATTTAATGTCCGAGAAAGAGAGGATCTGGACAGACCAACAGCTAGGCTAATTAAAGAATTTGATCAAATAGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGATTTGAAAAAGAAATAGGAAGTAAGTACGGCATTGTGCCTGGCTCTCGTGACAATTCTCTTTACAATGCTCTTTGGGTTGCACAAGCCCTTCTCCGTAAAGG..................................................................................ATCTGCAAAAACTGCTGATAAACGTATTCTCTTGCTTACAAATGAAGATGATCCTTTTGGTAATCTCAAAGGTGTCATANAAGTGGATATGATGAGGACAACGATGCAGCGTGCCAAA.............................................................................................................................................................................GATGCTCAAGATCTTGGTATTACAATTGAGCTTCTTCCACTAAGCCGGCCAGATGATGAGTTCAACGTTTCCCTTTTTTATGCT.........................................................................GATTTACTTGGNCTGG-NNGNGATGACCNNGCTCAGTTC-NNNCTCTGANAGGANAANG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U564933" ref_strand="+" ref_description="SGN-U564933 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|157353361|emb|CAO45287.1| (e_value=4e-68) unnamed; (*ATH) AT2G31660.1 (e_value=9e-59) | Symbol: None | importin beta-2 subunit family protein, similar to D-Importin 7/RanBP7 (Drosophila melanogaster) GI:7542336; contains Pfam profile PF03810: Importin-beta N-terminal domain | chr2:13471375-13478898 FORWARD | Aliases: T9H9.18, T9H9_18; ">
      <seq>cagtttaagtcgagctgaaaaatcacatctgaagtgtctctcggtccaagtgatagctgatgctctttactacaatgcacccttgacatggaacatccttcaaaagcttggccttgctctagaggtgtttaatctctggtttctgatgttgggacaaacaaaaaagagcggaaaacgggttaacttcaaaagggaacatgacaaaaaggtttgctgcttgggcttgacatctttgctccctcttcctgtggatcaattcccaagggaagccttagatcgtgttttcaaagcaactctagatctgcttattgcctacaaagatcaagtagcagaagcggctaaggaggatgaggcagaagacgatgatgatatgaatggcttgcaaactgatgaggatgacgatgaagatgacgagtctgacaaggaaatgggggatgatgctgaggaaggggatgaagctgacagtactaggcttcaaaaattggctgcacaggcaaaggctttccgctcacatgacgaggatgatgatgatgatgactctgatgacgattttagtgatgatgatgaagagatgcagtcaccccttgatgaggtggaccctttcattttctttgtggaaacaattaaagctatgcaagcatctgatccagtgaagttccagagcctgacccagactttggacttccgttatcaagcattggcaaatggtgttgctgtgcatgctgaggagagaagagcngagatagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="-" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="62409" stop="59249"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62111" g_stop="62060" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="0.885"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62059" i_stop="61043" i_length="1017">
            <donor d_prob="0.984" d_score="0.92"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61042" g_stop="60903" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="192" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60902" i_stop="60785" i_length="118">
            <donor d_prob="0.708" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60784" g_stop="60645" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="332" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60644" i_stop="60559" i_length="86">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60558" g_stop="60398" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="493" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="60397" i_stop="59912" i_length="486">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59911" g_stop="59776" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="629" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="59775" i_stop="59668" i_length="108">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="59667" g_stop="59549" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="630" r_stop="748" r_length="119" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="-" ref_id="SGN-U564933" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>748</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U564933" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62111" e_stop="62060"/>
          <exon e_start="61042" e_stop="60903"/>
          <exon e_start="60784" e_stop="60645"/>
          <exon e_start="60558" e_stop="60398"/>
          <exon e_start="59911" e_stop="59776"/>
          <exon e_start="59667" e_stop="59549"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGTCTCCGTCGAGCTGAAAAATCACATCTGAAGTGTCTCTTGGTCCAAGTGGTAATTTACTTAATGTTCAAACTTACTTTTGGGTATGTTTCTCTATTAAGTGTGTACTCTTGTTGGTATGTGGTAATTGGATGCTTCCTGAAACAGTAATATAGGAGTGCTAGCTATCTTGCGTCAGAGACTCCCTATGTGTCTTTTTGTTTCTGTTTTGCTAACCGTTGATCTATGAAATGTATTGTCTGTCATTTTCATATGACATATGCAGATGGATGCTTTCTTTGCTGCAGCAACATGCACATTCTTCATTTGTTATGAAAACAACGTTTTGATGAAATTGAATTCAATTGCATTGTGGTTGATCACATGAATCCTATATAGCAATGCTAGTATTGGAACCATTTCATTGGCATACTCAATTTCTTTTCCGCAACAAATGTTGTGGTTCTCTAAAACTAGAGTGCTCTACATCTCACACTTGTCACTCTACTGGCTTACATATGTCCTAAACAAATTATGATAATATTCTTAGAGCTGGACTGGTTGTGTGTGCAATTGGGCTAGGCAAGCTAGTTGGTATTCTTCCCATGTTTTGTTCTTTATTTATTTCCAAATGGCTCCAGAGAGATGGTAGCTTTCTGGAGCTCCGTGTGCTTTTAGGTGTATTAAGTCCCCTTTTAATTCCTTCAATCACCACAGTGTTGCGCATAGTGAATACTGCATTTGGAGATTTACGAGGTGGTGTGTATCAGTTTTGGGAAGAATTTGATTCTTCTTTTTCTCGTTCATTGTCAGAAGGCAATATAACAACCATGAATTTATATTTAATATGGGGTGTATCTGTTGAGTGTAGACCCTTCAAGAGCCGTCTGTGTACTTTCCCCTTCTCCCTTCTAACTGATCATCAAATTTGATGCACGTAGAATATATCTATACATATGATAAATTGCTGATGTTTCTATTTGCTTTAAGTGTTGGTACTCAGATTGTTCATAGCTTATTGTTCTTTTCTAGATTTTGTTTCACAGGTTGCTGATGTTTCTATTGTTTTGATAATTTTCCTTTTGGCAGATAGCTGATGCTCTTTACTACAATGCACCCTTGACATGGAACATCCTTCAAAAGCTTGGCCTTGCTCTAGAGGTGTTTAATCTCTGGTTTCTGATGTTGGGACAAACAAAAAAGAGCGGAAAACGGGTTAACTTCAAAAGGTGAAGAAGGCCTGTTACTCTTGCTGTTTCCAATGAAAAAGGAGAAGTTTAAACAATTTTGAATGAATTAGCAGGTAAACAGTCCCATTAATGTTATGCTCCTTATATTGTTTTGCAGGGAACATGACAAAAAGGTTTGCTGCTTGGGCTTGACATCTTTGCTCCCTCTTCCTGTGGATCAATTCCCAAGGGAAGCCTTAGATCGTGTTTTCAAAGCAACTCTAGATCTGCTTATTGCCTACAAAGATCAAGTAGCAGGTTAAACTTATTTTAGCATTTTCCTCATTTTCTGGTACATTACTACACCATGTACACTCATCTAATATTTTTATCATCGTTTTTAGAAGCGGCTAAGGAGGATGAGGCAGAAGACGATGATGATATGAATGGCTTGCAAACTGATGAGGATGACGATGAAGATGACGAGTCTGACAAGGAAATGGGGGATGATGCTGAGGAAGGGGATGAAGCTGACAGTACTAGGCTTCAAAAATTGGCTGCACAGGTACTAAAATTGTACTTGTACTGCTGATGCATATTTTTGGTGGAGTAGAGTCATCTATTACTTTCTGCTTTATTTTAACCAGAATGGGGGTCATAAGACAGCCTCTCTACCTGCACAATGTAGGAGTAAGGTTTGCGTACATACACTCCTGGACCCCATTGTTGGATTACACTGGGTGTGTTGTTGTTGAGGATTCGGAATTTATATTTTTAAATAGTGAATTAGCAGCTTGAGATGGGATCTGGTTTCTATCCTTCATATGACAACAGTTGAGCAACTTATTGCAGAGAAAGCACAAGATTTTTATTTGAATGTGGTTGAACAAGAGAACACATAGGGTTTTATGTCAGTTGTGTACTTGTTGACATGAGTTTGTTGGAGAATTTATTACAGATGGAGGGCTGGACGTCTCTAGTTCAAGACAACGATGGCCGCCATTAGAGTTAGCATCTCTAAAAGCTTTGACATCTTGTTCTGCTTTTGTAGGCAAAGGCTTTCCGCTCACATGACGAGGATGATGATGATGATGACTCTGATGACGATTTTAGTGATGATGATGAAGAGATGCAGTCACCCCTTGATGAGGTGGACCCTTTCATTTTCTTTGTGGAAACAATTAAAGGTATGATGCTCTGCTTGCCTATTTTGTTTTCAGAAATGACTTTTTGCTTGGTATGAGGCAATGGGCTCACTTATTTCGTCCCTTCTAACATTGGACTGTTGGATCCAGCTATGCAAGCATCTGATCCAGTGAAGTTCCAGAGCCTGACCCAGACTTTGGACTTCCGTTATCAAGCATTGGCAAATGGTGTTGCTGTGCATGCTGAGGAGAGAAGAGCAGAGATAGAG</genome_strand>
        <mrna_strand>CAGTTTAAGTCGAGCTGAAAAATCACATCTGAAGTGTCTCTCGGTCCAAGTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCTGATGCTCTTTACTACAATGCACCCTTGACATGGAACATCCTTCAAAAGCTTGGCCTTGCTCTAGAGGTGTTTAATCTCTGGTTTCTGATGTTGGGACAAACAAAAAAGAGCGGAAAACGGGTTAACTTCAAAAG......................................................................................................................GGAACATGACAAAAAGGTTTGCTGCTTGGGCTTGACATCTTTGCTCCCTCTTCCTGTGGATCAATTCCCAAGGGAAGCCTTAGATCGTGTTTTCAAAGCAACTCTAGATCTGCTTATTGCCTACAAAGATCAAGTAGCAG......................................................................................AAGCGGCTAAGGAGGATGAGGCAGAAGACGATGATGATATGAATGGCTTGCAAACTGATGAGGATGACGATGAAGATGACGAGTCTGACAAGGAAATGGGGGATGATGCTGAGGAAGGGGATGAAGCTGACAGTACTAGGCTTCAAAAATTGGCTGCACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAGGCTTTCCGCTCACATGACGAGGATGATGATGATGATGACTCTGATGACGATTTTAGTGATGATGATGAAGAGATGCAGTCACCCCTTGATGAGGTGGACCCTTTCATTTTCTTTGTGGAAACAATTAAAG............................................................................................................CTATGCAAGCATCTGATCCAGTGAAGTTCCAGAGCCTGACCCAGACTTTGGACTTCCGTTATCAAGCATTGGCAAATGGTGTTGCTGTGCATGCTGAGGAGAGAAGAGCNGAGATAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U585741" ref_strand="+" ref_description="SGN-U585741 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|147799666|emb|CAN64023.1| (e_value=1e-102) hypothetical; (*ATH) AT2G31660.1 (e_value=1e-89) | Symbol: None | importin beta-2 subunit family protein, similar to D-Importin 7/RanBP7 (Drosophila melanogaster) GI:7542336; contains Pfam profile PF03810: Importin-beta N-terminal domain | chr2:13471375-13478898 FORWARD | Aliases: T9H9.18, T9H9_18; (*SWP) sp|O15397|IPO8_HUMAN (e_value=6e-23) Importin-8 OS=Homo sapiens GN=IPO8; ">
      <seq>gcacttctccaatttttcgctgtctctgtctgcaacttctattcatcctttcttctctctctttatatacataaactctagaagaagtcctttcttctagggttcatacaatcatttgttttcattatcctttttgctgaaagttgaagttatggattttcagaaccttgctgtcatacttgcaggtgctctaagtccgaatccggatgaacggaaagctgctgagaacagtctcaatcagtttcagcataccccacaacatcttgtgagactgctgcaaatcatagtagatgggtcctgtgacatggcagtccgacaggtggctagtatccattttaagaactttgttgcaaagaactggtgccctcatgatcctgctgagcaatcaaaaattatgccaagtgacaaggaattggtgaggcaaaatattctcatatttattgcacaggttccttcattgttgagggtacagttgggggaatgcattaaaacaatgatacatgcagactacccggagcagtggccaactcttctgccttggataaagcataatctgcaggatcaacaagtatatggtgctttgtttgttctgagaatactctcgaggaaatatgaattcaaatcagacgaggagagaacacctgtttatcatgtcgttgaggaaacttttccacatcttctcaacatattcaacaaacttgttcagataacaaatccgtcaattgaagtagccgacctgatcaagctcatttgcaaaatattctggtcatccatttatttggagattccgaagcagttgttttgacccaaatgtggttcaatgcctggatggttcttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="-" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="71762" stop="67294"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71467" g_stop="71228" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71227" i_stop="69362" i_length="1866">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69361" g_stop="69226" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="377" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69225" i_stop="69052" i_length="174">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69051" g_stop="68964" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="465" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68963" i_stop="68827" i_length="137">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68826" g_stop="68677" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="615" r_length="150" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68676" i_stop="68131" i_length="546">
            <donor d_prob="0.429" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68130" g_stop="67968" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="616" r_stop="778" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67967" i_stop="67654" i_length="314">
            <donor d_prob="0.146" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67653" g_stop="67594" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="779" r_stop="840" r_length="62" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="-" ref_id="SGN-U585741" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>837</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U585741" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71467" e_stop="71228"/>
          <exon e_start="69361" e_stop="69226"/>
          <exon e_start="69051" e_stop="68964"/>
          <exon e_start="68826" e_stop="68677"/>
          <exon e_start="68130" e_stop="67968"/>
          <exon e_start="67653" e_stop="67594"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAC-ACTCCAATTTTTCGCTGTCTCTGTCTGCAACTTCTATTCATCCTTTCTTCTCTCTCTTTATATACATAAACTCTAGAAGAAGTCCTTTCTTCTAGGGTTCATACAATCATTTGTTTTCATTATCCTTTTTGCTGAAAGTTGAAGTTATGGATTTTCAGAACCTTGCTGTCATACTTGCAGGTGCTCTAAGTCCGAATCCGGATGAACGGAAAGCTGCTGAGAACAGTCTCAATCAGGTTTCATTTGCTTACAAGCTGCTTAAGTATTGTTTTGTTAATTTAAGTTGATTGAGAATAAGCTGAATTTGATTGGATTTGTTGTTACGATTGAATTATGATTCAATTTTACATATCAGAGAGTTATGATATGGTTAATGTTAGTCCTGGATAGCCAGATGAATGTAAAAGCTGCTGAAAACAGGGCTGATCAGGTTTAGTTTGCTTATAAGCAGCAAAAGTATTGATTCTTTTTTCCAAGTTGTTTGGGAATAAACTAAATTTGATCGGATTTGTTGTTATGATTTAATTGTGATTAAATCCATGTTGTTATTTCAAGTTGGATCAGTTTACATGTCAGAAATGTAAAGCTGCTGAAAACAGTGTCCATCTGGTTTAATTTGCTTATAAGCAGCACAAGTTTGATTCTCTTTTATTCAAGTTGCTTGAGAATTAACTGAATTTGATTGGATTTGCTGTTTTGATTGAATTATGATTAAATCTATGTGGTTATTTAAGTTGCATTACATATCAGAGAATTATGATATAATTGATGTTTTTGTTTGTGTTAATCCTGGATATCCAGATGAATGTAAAGCTGCTGAAAACAGTGTCTATCAGGTTTAATTTGCTTATAAGCAGCAAAAGTAAGAATAAACTGAATTTGATTGGATTTGTTGTTATGATTGAATTATGATTAAATCTATGCGGTTATTTGATGTGCAACAAATATGCTGATCAGAGAGTTATGGTATAGTTGATATTGTTGGTAGATTTTGTCCTGAATATCTGGATGAATGTAAAGCTGCTGAAAACAGTCTTCACAAGGTTCAATTTTCTTATATCAAGAGTATTGAATTTTTGTTTCAAGTTGGTTGAGAAAAAAATGAATTTGATTGAAGTTGTTGTTATGATTGAATAATTATTAAATCTATGTGGTTATTTAATTTGTGATCACATATACTGATCAGAGAGTTATGGTACAAATTGTTATTTTTGGTAGTGTTGTGCTGTATATACGATGAACATAAAGCTGCTAAAAACAGTTGAAGCATTAGTATTGAATTTTTCAGGTTGCTCAATTTAATAAGATCTGTAGTAATGATTGAGTTATCATTAAATTCATGTGCTTAGTTGATTGACATCAAACATACTGTATCATAGAGATATGGTAATATTTTTGTAGTTTTATTAGACCTGAATATCATGATGAACGTAAAGCTGCTGAAAATTGTCTCAATCAGGTTTAGTTTACTTATAGAAAGTATATTTTGTTTCTGGTTGCTTCAGATAAAAACTCAATTTGATCAAATTTGTTGTTATGATTGAATTATGATTAGATCTATGTGGTTATTCGATTTGCATCAAGTATACTGATCAGAGAGTTATGTGTAATATTTTTTTCCAGAACTATGGATATGTGGTGTTTGGAAATTGTAGGTAATTGGATTGGGTTTGTGATGTTGGACGTGCAAGTGTATTAAACTATTTAATGATTGACAAATCATATTGCCTGTTTCAAGTTGGATTTTTTTACTTCTGACTCAGGTGTTCTCCTCATGTTCAATTTATTTGACAAAGAAATATATTTGAATTCTCCAATAAAAATAAACAGAGTTTCTTAATTTTGCTGATAGGAAATTGTTTTTCTTAGTTCTGTAATCTGAAGAATGTGGTTTACTTTTTTCTGTACTTTGTTTATTATAAGAGCGTGGTTCTTATTTTAGCTATTTATGTATGTTTAATTTTAAATCATCTCTGTCCTCATGGATTAAAGCTCACAGGTTGACATTATAGGATGTTCAGCACTTGAATTATGGGGAAAAAATTTGTGGACATTGGATTATTTTTAATTTTGTATATTCCTGAGTGCATCTATGTTTGCAGTTTCAGCATACCCCACAACATCTTGTGAGACTGCTGCAAATCATAGTAGATGGGTCCTGTGACATGGCAGTCCGACAGGTGGCTAGTATCCATTTTAAGAACTTTGTTGCAAAGAACTGGTGCCCTCATGATCCTGGTAATGACCTTATTATATACCCCTATAAAGGAGAAATAGAAGAATAATATATTATTTTTTAAAAATATTTATAAGATTTTTTTAATATGCAATAAAATGACAAAGTACATTTCATGATATTTTCATTATGGTTGTGTAAAATTGATATTTACGGAGAAATTGGTGTTGATGTAGCTGAGCAATCAAAAATTATGCCAAGTGACAAGGAATTGGTGAGGCAAAATATTCTCATATTTATTGCACAGGTTCCTTCATTGTTGAGGTATTCTTTATCATCTGTATTTGCTGTAATATGTTTTTTATGGTAATCCTATTTGAAAAATAAAATGTTCATAGTAATTTTCTTTTCTTTTTTGACACTGAACTCTTCTAACTAAACAAGTTTGTTGCTGTGAACAGGGTACAGTTGGGGGAATGCATTAAAACAATGATACATGCAGACTACCCGGAGCAGTGGCCAACTCTTCTGCCTTGGATAAAGCATAATCTGCAGGATCAGCAAGTATATGGTGCTTTGTTTGTTCTGAGAATACTCTCGAGGAAATATGAGTAAGTTGTTGATTTAGAATGGTGCTCTTCTTGACAATCTCTATTTTTCTTTGTTTTGGCTACTCTAGAAATTGTTTCTATGTGCTGCGCTTTACATTCTTCTGCTGATTCATGACCAATGAGTTTGCCTACAGAAAATGCCTTTCATGTATTACACAGTGTATCCCGCCCCCCCTGCTTTGTCTAATGGTAAGATCGTAATTTGTCATGTGTGGCTAAGCCACACATTATGGGTCTGACGCTGCTGCATACAAAAGTTTTATATTTAAGTCGGAAAAAAGTTGAGGGGTGGGGTCATTGTCTACCGAGTTGCAAACTGTGCACCACTGACCCATTAAAATATGTATTATATAGTTTCTCTGAGTTCTCAGCGATGGATGAATAGTATTGAAGTGCAGGGATCTCCTTCTATCTGTTTAGAGATGAAAAACCCTTTTTGAGTGTTTTTGTTATCTATGAATATTCATTCTGTGTCCTAGATCAACTGGATGGTGAAACTCCATTATAACTTCTTCTGTGTATGCACATCTTTTTTCTATTTAACAGATTCAAATCAGACGAGGAGAGAACACCTGTTTATCATGTCGTTGAGGAAACTTTTCCACATCTTCTCAACATATTCAACAAACTTGTTCAGATAACAAATCCGTCAATTGAAGTAGCCGACCTGATCAAGCTCATTTGCAAAATATTCTGGTCATCCATTTATGTATGTTGCCTTTGATTGTTATTATTTTGTTTGTCTTATAAGGCTACATGTCTGGATGAGGGTTGTTGTTTCTAATTATTTAGCCGAACCCTTTAAAGAAGCGTGTGGTGTGTGTAGCGAGTTTCTGCTTGTTTGCCTTTTCATGTTCTGTTAGTATTTTCAAATATTCTTGATCTGGAAAATAATTCATAGAATTGACCTGGATAAAAATGCTGTCCCCCTGCTGTTCAGATTTATATTCTTATAATATAGATCCTTAAAAAAAAATTTGATAACGTAACTGAAGTGTATGCAACTCTCTCTACCTTTTCCAGTTGGAGATTCCGAAGCAGTTG-TTTGACCCAAATGT-GTTCAATGCCTGGATGGTTCTTTTC</genome_strand>
        <mrna_strand>GCACTTCTCCAATTTTTCGCTGTCTCTGTCTGCAACTTCTATTCATCCTTTCTTCTCTCTCTTTATATACATAAACTCTAGAAGAAGTCCTTTCTTCTAGGGTTCATACAATCATTTGTTTTCATTATCCTTTTTGCTGAAAGTTGAAGTTATGGATTTTCAGAACCTTGCTGTCATACTTGCAGGTGCTCTAAGTCCGAATCCGGATGAACGGAAAGCTGCTGAGAACAGTCTCAATCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCAGCATACCCCACAACATCTTGTGAGACTGCTGCAAATCATAGTAGATGGGTCCTGTGACATGGCAGTCCGACAGGTGGCTAGTATCCATTTTAAGAACTTTGTTGCAAAGAACTGGTGCCCTCATGATCCTG..............................................................................................................................................................................CTGAGCAATCAAAAATTATGCCAAGTGACAAGGAATTGGTGAGGCAAAATATTCTCATATTTATTGCACAGGTTCCTTCATTGTTGAG.........................................................................................................................................GGTACAGTTGGGGGAATGCATTAAAACAATGATACATGCAGACTACCCGGAGCAGTGGCCAACTCTTCTGCCTTGGATAAAGCATAATCTGCAGGATCAACAAGTATATGGTGCTTTGTTTGTTCTGAGAATACTCTCGAGGAAATATGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCAAATCAGACGAGGAGAGAACACCTGTTTATCATGTCGTTGAGGAAACTTTTCCACATCTTCTCAACATATTCAACAAACTTGTTCAGATAACAAATCCGTCAATTGAAGTAGCCGACCTGATCAAGCTCATTTGCAAAATATTCTGGTCATCCATTTAT..........................................................................................................................................................................................................................................................................................................................TTGGAGATTCCGAAGCAGTTGTTTTGACCCAAATGTGGTTCAATGCCTGGATGGTTCTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U573891" ref_strand="+" ref_description="SGN-U573891 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|157359557|emb|CAO67769.1| (e_value=1e-69) unnamed; (*ATH) AT2G31650.1 (e_value=8e-69)  Symbol: None | trithorax 1 (ATX-1) (TRX1), identical to trithorax-like protein 1 GI:12659210 from (Arabidopsis thaliana); characterized in Alvarez-Venegas R,et al, ATX-1, an Arabidopsis Homolog of Trithorax, Activates Flower Homeotic Genes.(Curr Bio... ; (*SWP) sp|Q9C5X4|ATX1_ARATH (e_value=7e-68) Histone-lysine N-methyltransferase ATX1 OS=Arabidopsis thaliana GN=ATX1; ">
      <seq>tctcagttgcggcgggaaacgccattctcccttaatccgccgttctatcgaaccctagaaacccaaattccagtgccaattcagttaaaaatctatcctttttgacggaatcaaagagaaaaatcaaattaatttggttttgtgcatctttttgttcaattatggcttttccgctaactgattcaactctttcgcccaatgatgatacgaatgctaaccagttgttggaagaggaggaacgaaatcaacaggtggatggagaggatgacgatcgagagagagttactcctttgagatatgtcccattgtgcgatgtgtactccgctacttccccttacgtgggcgctagtgggtcgaaaaaagttaaagctgctcgcaaaatcctcccacatttggagaccgaagatcaccacaagcattcgctaacacatcacatttcttcaatgtctggaagggaactccctattattcacttctacactcgccgtcgcaaaaggaaacgacacgaaccttctttttacgactcgttaatctctcgatcggtgaaattagctaatggtgacagagaaagtggggttgatgacggtgaaggaaatgaagtgggtgtgaaatttaaagagaatcagaggagaaaggagcgttattcaaacccattttctccgcagatgaaattagggaatttctccaatggaaatagagaagacgagggaagagaccatgaaatggttttaaataataagcagaagcgaaaagtgggcaattcgaaccaagttcctcacccgaaaaaattagccaatatcttcaatggaaacatagaagatgagagtgaagacaaggagaagcttataaagagtagggataagcagaataagaatgtaggagatttaaagctagtttctcactctgtcagattagccaattcttccaagggaaacagaatagacgagggggaaactgaggacggagaagaggaagtggttattaagaataaggagaaggtggaaaatttagaagtagtggatttttgcatcgagagtgagcgggatgaccatggagaatatgatggagcagtggttgtgaaacatattatgaagaaggagaagaagaggagtaaggtggttaattcagagctggaaaaaaatttgggggtagaagctaatgtaattagtctgttggatgagtcttgttcgagaggaactcgaaataatgctggtaaaaataaaatcgacaccaatcatggtagcaattccaaagattttaactcaacgggcaacatgaaggaacaaaaagaacattgtattttggggaatagtttgaataaaaaatgcttagggtcaattcggacaaagaaatgggtttggctgagttttgaaggagttgatcccaagaaatttattggactacaatgtaaggcgtattggccattagatgctgtttggtacactggtcgtataactgggtacaactcagagactggacgacatcatgtgaaatatgtagatggggatgaagaagatctgctcttatcaaatgaaaggatcaagttttctgttacacttgaggaaatgaatcgtctgaagttgagaccccgcgatacgagtcctgaaactgatgtaatcggtgttgatgaaatgattgtattagctgctagtttggctgattgtgaagctcttgagcctggagatattatatgggccaagctgactggtcatgccatgtggcctgccattgttttagatgaatcttgtgctggcgggtgtaaaggtctaaacaaagtttcaggggaaaaatcagttcttgtgcagttttttggcacgcatgattttgctagggtcaagttaaagcaagttatctctttcttaagagggcttctttcttcctttcacctcaagtgcaaaaagccaaaatttattcaaagtttggaggaagcaaaaatgtgagccttgtcgatctgaattcaattttagtagttttccctctttcaggccctttgctgattttgttgatctttcccattttctgactgtcaatacttgaattgggggaaaaacttgtagaaataattgtctcaataaataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="+" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="76453" stop="79759"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76753" g_stop="78112" g_length="1360"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1360" r_length="1360" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78113" i_stop="78195" i_length="83">
            <donor d_prob="0.945" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78196" g_stop="78247" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1361" r_stop="1412" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78248" i_stop="78333" i_length="86">
            <donor d_prob="0.879" d_score="1.00"/>
            <acceptor a_prob="0.535" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78334" g_stop="78408" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1413" r_stop="1487" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78409" i_stop="78502" i_length="94">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78503" g_stop="78722" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1488" r_stop="1707" r_length="220" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="78723" i_stop="78974" i_length="252">
            <donor d_prob="0.957" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78975" g_stop="79098" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1708" r_stop="1831" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="79099" i_stop="79211" i_length="113">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.892" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="79212" g_stop="79459" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1832" r_stop="2079" r_length="248" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="+" ref_id="SGN-U573891" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>2079</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U573891" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76753" e_stop="78112"/>
          <exon e_start="78196" e_stop="78247"/>
          <exon e_start="78334" e_stop="78408"/>
          <exon e_start="78503" e_stop="78722"/>
          <exon e_start="78975" e_stop="79098"/>
          <exon e_start="79212" e_stop="79459"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCAGTTGCGGCGGGAAACGCCATTCTCCCTTAATCCGCCGTTCTATCGAACCCTAGAAACCCAAATTCCAGTGCCAATTCAGTTAAAAATCTATCCTTTTTGACGGAATCAAAGAGAAAAATCAAATTAATTTGGTTTTGTGCATCTTTTTGTTCAATTATGGCTTTTCCGTTAACTGATTCAACTCTTTCGCCCAATGATGATACGAATGCTAAGCAGTTGTTGGAAGAGGAGGAACGAAATCAACAGGTGGATGGAGAGGATGACGATCGAGAGAGAGTTACTCCTTTGAGATATGTCCCATTGTGCGATGTGTACTCCGCTACTTCCCCTTACGTGGGCGCTAGTGGGTCGAAAAAAGTTAAAGCTGCTCGCAAAATCCTCCCACATTTGGAGACCGAAGATCACCACAAGCATTCGCTAACCCATCACATTTCTTCAATGTCTGGAAGGGAACTCCCTATTATTCACTTCTACACTCGCCGTCGCAAAAGGAAACGACACGAACCTTCTTTTTACGACTCGTTAATCTCTCGATCGGTGAAATTAGCTAATGGTGACAGAGAAAGTGGGGTTGATGACGGTGAAGGAAATGAAGTGGGTGTGAAATTTAAAGAGAATCAGAGGAGAAAGGAGCGTTATTCAAACCCATTTTCTCCGCAGATGAAATTAGGGAATTTCTCCAATGGAAATAGAGAAGACGAGGGAAGAGACCATGAAATGGTTTTAAATAATAAGCAGAAGCGAAAAGTGGGCAATTCGAACCAAGTTCCTCACCCGAAAAAATTAGCCAATATCTTCAATGGAAACATAGAAGATGAGAGTGAAGACAAGGAGAAGCTTATAAAGAGTAGGGATAAGCAGAATAAGAATGTAGGAGATTTAAAGCTAGTTTCTCACTCTGTCAGATTAGCCAATTCTTCCAAGGGAAACAGAATAGACGAGGGGGAAACTGAGGACGGAGAAGAGGAAGTGGTTATTAAGAATAAGGAGAAGGTGGAAAATTTAGAAGTAGTGGATTTTTGCATCGAGAGTGAGCGGGATGACCACGGAGAATATGATGGAGCAGTGGTTGTGAAACATATTATGAAGAAGGAGAAGAAGAGGAGTAAGGTGGTTAATTCAGAGCTGGAAAAAAATTTGGGGGTAGAAGCTAATGTAATTAGTCTGTTGGATGAGTCTTGTTCGAGAGGAACTCGAAATAATGCTGGTAAAAATAAAATCGACACCAATCATGGTAGCAATTCCAAAGATTTTAACTCAACGGGCAACATGAAGGAACAAAAAGAACATTGTATTTTGGGGAATAGTTTGAATAAAAAATGCTCAGGGTCAATTCGGACAAAGAAATGGGTTTGGTACTTTTTTTTTCCCTGCTCAATTTTGTGTTTTATATATGTGTGCTGTCATGAATAGAAGTGTTCTTTTATGTGTACTACAGGCTGAGTTTTGAAGGAGTTGATCCCAAGAAATTTATTGGACTACAATGTAAGGTGTGAATTGATCAAACTTGGAATAATTAGAATTTACTATTGTTATTATCAGTTTAAACAACTCATTGAGGAGTCTTATTTCATAGGCGTATTGGCCATTAGATGCTGTTTGGTACACTGGTCGTATAACTGGGTACAACTCAGAGACTGGACGACATCATGTAATTGATTTTCTGGTTCCTTTTTATATAAATTATGTTTGATCTTTTGATGGTCGAGTGTATGAAACATGTTCCGTGTTCGAGTCCATTGCAGGTGAAATATGTAGATGGGGATGAAGAAGATCTGCTCTTATCAAATGAAAGGATCAAGTTTTCTGTTACACTTGAGGAAATGAATCGTCTGAAGTTGAGACCCCGCGATACGAGTCCTGAAACTGATGTAATCGGTGTTGATGAAATGATTGTATTAGCTGCTAGTTTAGCTGATTGTGAAGCTCTTGAGCCCGGAGATATTATATGGGCCAAGCTGACTGGTAAATTATGGCTTCCCTTTTCTACTTCTGACTATCGATCAGGTCTTATTTGTAACTTTATCACATCCACTCGTGGTTATGCACAAATTAGATAGCAGCCTGAGCTCTCGAAGAAGAATTAATAACAAAGATAAAATCTTTTTACCAACTCAATTATGCATGATCTTTTACTTCCTGGAACATAATGGGAGATCAAAATCTCTCAAATGTAGCAACTATCTATTTTTTCATTGATTTTCTTTGTCAATACAGGTCATGCCATGTGGCCTGCCATTGTTTTAGATGAATCTTGTGCTGGCGGGTGTAAAGGTCTAAACAAAGTTTCAGGGGAAAAATCAGTTCTTGTGCAGTTTTTTGGCACGCATGATTTTGCTAGGTGTGTTAATTGGAAGTTTGTTGTGGATCTAATTGGAGTTCTATTTACCATTTAAGCAGCAGTATGCTCAGCTTTTCCTTGTGCGCTTATGAAACTTTATTATTGGATTTCAGGGTCAAGTTAAAGCAAGTTATCTCTTTCTTAAGAGGGCTTCTTTCTTCCTTTCACCTCAAGTGCAAAAAGCCAAAATTTATTCAAAGTTTGGAGGAAGCAAAAATGTGAGCCTTGTCGATCTGAATTCAATTTTAGTAGTTTTCCCTCTTTCAGGCCCTTTGCTGATTTTGTTGATCTTTCCCATTTTCTGACTGTCAATACTTGAATTGGGGGAAAAACTTGTAGAAATAATTGTCTCAATAAATAA</genome_strand>
        <mrna_strand>TCTCAGTTGCGGCGGGAAACGCCATTCTCCCTTAATCCGCCGTTCTATCGAACCCTAGAAACCCAAATTCCAGTGCCAATTCAGTTAAAAATCTATCCTTTTTGACGGAATCAAAGAGAAAAATCAAATTAATTTGGTTTTGTGCATCTTTTTGTTCAATTATGGCTTTTCCGCTAACTGATTCAACTCTTTCGCCCAATGATGATACGAATGCTAACCAGTTGTTGGAAGAGGAGGAACGAAATCAACAGGTGGATGGAGAGGATGACGATCGAGAGAGAGTTACTCCTTTGAGATATGTCCCATTGTGCGATGTGTACTCCGCTACTTCCCCTTACGTGGGCGCTAGTGGGTCGAAAAAAGTTAAAGCTGCTCGCAAAATCCTCCCACATTTGGAGACCGAAGATCACCACAAGCATTCGCTAACACATCACATTTCTTCAATGTCTGGAAGGGAACTCCCTATTATTCACTTCTACACTCGCCGTCGCAAAAGGAAACGACACGAACCTTCTTTTTACGACTCGTTAATCTCTCGATCGGTGAAATTAGCTAATGGTGACAGAGAAAGTGGGGTTGATGACGGTGAAGGAAATGAAGTGGGTGTGAAATTTAAAGAGAATCAGAGGAGAAAGGAGCGTTATTCAAACCCATTTTCTCCGCAGATGAAATTAGGGAATTTCTCCAATGGAAATAGAGAAGACGAGGGAAGAGACCATGAAATGGTTTTAAATAATAAGCAGAAGCGAAAAGTGGGCAATTCGAACCAAGTTCCTCACCCGAAAAAATTAGCCAATATCTTCAATGGAAACATAGAAGATGAGAGTGAAGACAAGGAGAAGCTTATAAAGAGTAGGGATAAGCAGAATAAGAATGTAGGAGATTTAAAGCTAGTTTCTCACTCTGTCAGATTAGCCAATTCTTCCAAGGGAAACAGAATAGACGAGGGGGAAACTGAGGACGGAGAAGAGGAAGTGGTTATTAAGAATAAGGAGAAGGTGGAAAATTTAGAAGTAGTGGATTTTTGCATCGAGAGTGAGCGGGATGACCATGGAGAATATGATGGAGCAGTGGTTGTGAAACATATTATGAAGAAGGAGAAGAAGAGGAGTAAGGTGGTTAATTCAGAGCTGGAAAAAAATTTGGGGGTAGAAGCTAATGTAATTAGTCTGTTGGATGAGTCTTGTTCGAGAGGAACTCGAAATAATGCTGGTAAAAATAAAATCGACACCAATCATGGTAGCAATTCCAAAGATTTTAACTCAACGGGCAACATGAAGGAACAAAAAGAACATTGTATTTTGGGGAATAGTTTGAATAAAAAATGCTTAGGGTCAATTCGGACAAAGAAATGGGTTTG...................................................................................GCTGAGTTTTGAAGGAGTTGATCCCAAGAAATTTATTGGACTACAATGTAAG......................................................................................GCGTATTGGCCATTAGATGCTGTTTGGTACACTGGTCGTATAACTGGGTACAACTCAGAGACTGGACGACATCAT..............................................................................................GTGAAATATGTAGATGGGGATGAAGAAGATCTGCTCTTATCAAATGAAAGGATCAAGTTTTCTGTTACACTTGAGGAAATGAATCGTCTGAAGTTGAGACCCCGCGATACGAGTCCTGAAACTGATGTAATCGGTGTTGATGAAATGATTGTATTAGCTGCTAGTTTGGCTGATTGTGAAGCTCTTGAGCCTGGAGATATTATATGGGCCAAGCTGACTG............................................................................................................................................................................................................................................................GTCATGCCATGTGGCCTGCCATTGTTTTAGATGAATCTTGTGCTGGCGGGTGTAAAGGTCTAAACAAAGTTTCAGGGGAAAAATCAGTTCTTGTGCAGTTTTTTGGCACGCATGATTTTGCTAG.................................................................................................................GGTCAAGTTAAAGCAAGTTATCTCTTTCTTAAGAGGGCTTCTTTCTTCCTTTCACCTCAAGTGCAAAAAGCCAAAATTTATTCAAAGTTTGGAGGAAGCAAAAATGTGAGCCTTGTCGATCTGAATTCAATTTTAGTAGTTTTCCCTCTTTCAGGCCCTTTGCTGATTTTGTTGATCTTTCCCATTTTCTGACTGTCAATACTTGAATTGGGGGAAAAACTTGTAGAAATAATTGTCTCAATAAATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U599958" ref_strand="+" ref_description="SGN-U599958 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157359557|emb|CAO67769.1| (e_value=1e-54) unnamed; (*ATH) AT1G05830.1 (e_value=1e-55)  Symbol: None | trithorax protein, putative / PHD finger family protein / SET domain-containing protein, similar to trithorax-like protein 1 (Arabidopsis thaliana) GI:12659210; contains Pfam domain, PF00628: PHD-finger and PF00856: SET domain | chr1:... ; (*SWP) sp|Q9MA43|ATX2_ARATH (e_value=1e-54) Histone-lysine N-methyltransferase ATX2 OS=Arabidopsis thaliana GN=ATX2; ">
      <seq>gggaaaaagcttgaagaagtcagaagttgcccacttgaattgggggacttgaaaatagttagccttggaaaaatagtagaagattcggagctctttcgagatgaggaatttatctggccagaaggttatactgctgtgaggaagttgccatcagtaacagatcccagtgtacgtgtatcatataagatggaggtactgagagatcctgatttccggacacgacctttatttagagttacatcggatagtcgagaacagtttaagggatcttcaccatctgcttgctggaataaagtttacaaacagatgaggaagacacaagttgacaattttgatgaatcaatatctagccgtaaaagtgaaaggacctttggatcaggttctcatatgtttggcttttctcatcctgaaatttcgaaacttataaaggagttatcaaagtccaagattcttgcaaaatccttgaaattggcgtcttcaaaaaatcaagacttgccggctggttataggtctgtccgtgttaaatggaaagatctggaccaatgcaacgtttgccatatggatgaggagtatgaaaataatttgtttttgcagtgtgacaaatgccgaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="+" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="80897" stop="91375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81196" g_stop="81262" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81263" i_stop="81477" i_length="215">
            <donor d_prob="0.613" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81478" g_stop="81570" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="160" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81571" i_stop="81655" i_length="85">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.738" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81656" g_stop="81753" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="258" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81754" i_stop="88697" i_length="6944">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88698" g_stop="88868" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="429" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="88869" i_stop="90684" i_length="1816">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90685" g_stop="90822" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="567" r_length="138" r_score="0.993"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="90823" i_stop="91030" i_length="208">
            <donor d_prob="0.965" d_score="0.98"/>
            <acceptor a_prob="0.859" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="91031" g_stop="91075" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="612" r_length="45" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="+" ref_id="SGN-U599958" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U599958" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81196" e_stop="81262"/>
          <exon e_start="81478" e_stop="81570"/>
          <exon e_start="81656" e_stop="81753"/>
          <exon e_start="88698" e_stop="88868"/>
          <exon e_start="90685" e_stop="90822"/>
          <exon e_start="91031" e_stop="91075"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAAAAAGCTTGAAGAAGTCAGAAGTTGCCCACTTGAATTGGGGGACTTGAAAATAGTTAGCCTTGGTATTTTCTTTCTTCAAATCTAAGCTAAATACTGATTAGAGAGCAAAAAGAATGCAATAATATTCTATTGAAACACCAAAGTACTGTGGTCTTCATTTTTTTTCCTGTTTTGACGAGAAACATTCCCTATTGTCATAACTTAGGTTGATGTTCTCTGCTCACTTAATCAATAACTGTGATATATCAATTCTTCAATGTGCGAATGTCTTATTTAGGAAAAATAGTAGAAGATTCGGAGCTCTTTCGAGATGAGGAATTTATCTGGCCAGAAGGTTATACTGCTGTGAGGAAGTTGCCATCAGTAACAGGTGACTGTTTTCCATTTCTGCTGTGCCTTTGGTTGAATTTAGTGGTATAAAATTGATCATTTCTTCTACTCCTTAATTGAGTCAGATCCCAGTGTACGTGTATCATATAAGATGGAGGTACTGAGAGATCCTGATTTCCGGACACGACCTTTATTTAGAGTTACATCGGATAGTCGAGAACAGGTATTCTGCAATTTTATGATGTCAAGTAAAGTTTTTATTTTTCTGTATTCAATTTGATGATGTCGAATCAAGTTCTTATTTCTCTCTTTAATTACTTCAGTTGCTCACCTGTATGCTATATACTCCTTTGATTATAATTCAGTTTTTGAATGCTGTATAGTTCTGTGGTCTCTTATCTGACTGAGACACTGACTATATTATCTCATGTCTAATATTATAGCTCACTTATGGTAGATACAGATCAGATTGTAGATTTGATAGGAAGTTTGTAATTGACACTTTTTATTGGTGGCCAGCATGCCCTTAATGCTGAAGAATACAACCTTACCAGTTTTTTTAAAAAAGTAAAATATTATAGCTCACTTTTAAAATAGTGGGTTCCTTGTTCAGATTGTGGATATCCTTTCATGAAAACTTCTGCTCCATAGCTTTTGAGAGGAACTGTTCTTTTTCACATTTTGCTGAGAAATATTGTGTTAAACAAACTACTGCTTGTGATCTTTAAGCATTGGACAAAAGTTATCCTGGGATGTAATAAAGAACTAATTGAGCTATTGAAGCTCATTAAGGTTTTCAGTTAGATGGAAATGACACTGTACTGTTCTCTCTTATGAGATAGATGGATACCCAAAGGTTAAAAGGGTAAATCAAAACTACTTATAAAAGAAAGGGTAATTAAGAAACCAAACTGAAGTTTTCAAGGTTGTCATAAAAGTAGATAAATTGCATTGAACTATGATATGCTCATTTTCTTTTTGATAAGGTTAACTGTATATTCACACCAAAAGACCCATCAGGTAAAAACTGATGGGGTGGGATTTACTCACCCAGGGGTATCATCAAGATCAAAAACTACACATGAGACTTGATAATTGTCCCATGAAATCGACTAAACTATCTATCTCTCCCACTATATCCTCTTTACACCAAAAATACAAAAGCTAAGGCTCCTCATCTTGGTATTCTGGAAACTGCTGGCTATTCCATCATGACCTCTTTCATTTCTCTCTCTTCATAATGTCCACCAAATGCATGCTGAAATGCTCCTCCAGCAGTCTTCTTGTGGCCCTCTTCTCACCACTCCTTCCCAATTTTTCAGCAAATCAAAGGATCACCCAATTTATGCCTAGTATACAAAAGAACATGTTCCACAAATTTGCAGCTGTCCGGCAGTGCAAGAACAAGTGGCTATTTATCTGCCTTTTTCTCACACATCGAACACCTTGAGCAAAATAGGGTCAAGCACACTCTAAGATGAAATAAATGAATGCACATAAGCTGGCTCGAATCGCCATGGTGATAAAAAAATTGTTAAGGTGAAGGACTACACGATGGAGGATAAGACCAAATAGGTTGCAACAACAACAACATACAAGTGGAATCCCATAAGTGACTAGCGAGGGTAGAATGTATGCAAGCCTTACCCTGACTTTTGTGTGGCAGAGAGAGATCCTCAACTCAGAAGAGAAAACAAGAAAAGGAAACAATTGGAAAAGAAGGAAGAGAGGAAAAAAGAACAGGAAGAATGCATGCATGGAGAAAATATATGACAACATATATAGCAGATATAGAGCAAAGGAGATTGTAAAACACATCACAAAATAATAAGTTATGCTAATCCTAAACAATACTACTATTATGAAGAACTGTAGAGGAGGCTAGTCTCCTTCCTATCCTACCTAAAGTGTGACATTATTCAGCTACCTACTAACCTTATATCTCAACCTTCATCATTTGTGTTGCCTATCCCACATAAGACAAGATGAGTTACATTCCATTAAAATGTCAACTACGGATCTCAAGCACTTTGAGATTTCATAGGAATATCTGGAGAAGAGCATGAGTTCTTACTTTGTGTTCTATATAGGTATTTTTGATGAACGCTTAAAACTGTACTTTTTTTACCCTGATCCATATGGAGTAATAAATTCATTTATTTGGTTTGTACACATCTCATACGCAAAACGTTTCTATATCTAATCGAAGATATGACTCTCTACAAGTAAGACATTTTTATCTCACAGAGGTTTAAAAGTTAAAACCATATTTTTTGGGTAAGGGAAAACAACTTTCTTGACGATGGGAAGAAAAACTCATGTTTACAAGTGATATATCAAAAGATAGAGAATTCACAAAGAATATGATTCTCTGTGAAAGACACCCCAAAATTTACAGAAACTAGATTCTCACTGGTGCATCAATAAGAAATAATAGACAAGAACATATTACCTCAAACATAAAACTAGTAATCACTGCATTTCATGCGGTTATAAACATAGATAAATGAATTTTAAAAGCTCTCTTTATAATTTTAATTCTATAAATTGTGATATATTATATTTTTTTTTGGGTTGGCTCTAACATTTCTCATATAATTTGTTTCACAAAAGAAAAATCTTGAAAGAAAATATTGATATTAAGACTACATCAATATTATACATAGTAACTTTACATATACAATCACTAGGTGATGAAGTTTTTTTTGTTTTTGTTGTATAAGTAACAAATATCAACAATAAAGATACATTTGGCAGTATTTTGTTGATTATAAATTGTGAAAGCCTTTTTCTTGGATAAATTAGTTAATGTTTAAATCACCTTATACATTTCTATAGCCCATGTGTTGTTGTTCTTCTTCAATGAATCATCATCAATAATTTACAACAAGACCCTTCATTTACTTTTCGATTACTAAAAGGAAAAAAGAGAGGAAATTTTACTCACTTTAGTCAAATTCATTTATAACCTAAGATTATAAAAACAATCTTATAATGGATAAACTTCGATCAAAATGTCTATATTTTGAGTTATTATCAAGTAGAAAATTATATCTCTAGATAAACAACTTTTTTGATGCATACTTTTTAAAAGTTTTTTAATAAGAAAATTTTAGCATTCAAGTTAGGTGTACTTCCATCATTTTTTTGGAAAAATTTTTTGAAGAGGGAATGAGGAGGATTAAAAGTCAGGAAACATTATTGTCTAGTAAAGGGCCTTTAAAAAAAAAAAAGTAAGAAAGGACAAATTCAATTTGAAATCTTACCCCAAAATGCTGGGATTAAAATGGAACAATAAATTTATATTTTGATGCCAGAGATATGTCGCATCATTTTACCAACCTTATTCATATAAACACAACATTCATACATATATTGCTCTTTGTATCTTTCATTTTTCTAGTAGTTATTTTAGATGAAAGAGAATTACAAATTATGCCATCAATGAGGACCAATAATTGGGAGGAAGTTTAAAAAGTGAAAAAAGAAAATTAAGACACAAATTCAACTGTTTCATATTAGTTAAATAAGGAAAAGAGAACTGTGTACACTCTTTTCTGTTTTGTATACATTCAACACATTTCCATCTTTCCTTTTTTTCTCTACTTTCCTTCTCTTTATTATTAATAATCATAAAAAAAGCTCATTTTTCGTTAACAAATAAAGATAGAGATGTAGTATGTCTTTAAAAAAGTGAGATAATTACATTTTGATCAGATGGAAAAAATTGAGCACCTCGACAACATCCCCACACATGATATAAGACATTTCTAAATTAAAGTTATCCCGTTAAGGATTTATCTCCCAAATTTACTTTTAAGTTTTATAGGATGAAGAGAAGGAATATTATTAACAAGGCAATTCGCGAAATTGGGAAGAAAATTTGAGAAAAGAAGAAGTGGAAGAAAATGGAATTTGGTTTGAAATTTAAAAGAAAGGAAATGGTGCGGCGTTGTAGTGAAATATGGAACCCCTTTCCGAAAGATTATAAATGGTACCTAATAATGAGGAAAGAGATAAATATTAAAAATTATATTAGGTGAAATTTAAGAAAACAAATTTAGAACTATAGGAAATTAGATAAATAAATGGAAGTTAATGCAAAAATCTATTAAATTAGATAATAGCAACCCTAGCCTAGGATAGTGCCTTCTCACATGGCCGAAGTCCTTTTATATAGATATATAGATTATTCTCTACCCTTTCAAAAGCTTCTTTATCTTTCTTTCCTGATGTCTAGCTTAACAAGTCCTTCTTGACATTGTTGGCATCACCCATTGCAAGCCAAATTACCTAGAGATTTTCCACCTTTAGTGAGATATTATTCGACAATGTAAAGGTGATGATCCATTGTGCATCCACACTCTTACACATAAAATACCAAATAAGATATGTAATCCTCAAATTCTTAATTTTCGAAATCATTGTCCTTGTTGGCAACCAACTTAAGAAACACACCTTTCTTGGAACCTTGGAGTCCAAATCGGTGGATAGGGAAAGGCCGACTGTTATGTAATTAAGAATTCTAGTTGTCATACTAGGAATTTATTTATGGAGCAATCGAAGTCTTGAAATTCAGTATTAGACTACTTCCTAGTATTAAAGGTTTCTTCTGACTCTTAAGTTTTGTTGGATCTCTTTCATGTAAAATCTGAACTACCCGTCGTAGTGTAGCCAATCTAGCATTGTATTCTGTAGATGTGTGAAACTTATAAAACAAAAAATGTTAGGAGATGAATCTCAATATGCATATACTCTACCTTAAGAAGTTATGCTACTACTAAACTCTTTACCACCACTTCAAAATATTGCTCCACAGTTTGCTCGCGAAGGGAAGTGTGATATTTTAGTCCTCCAACCCCCTCTCCATAATCTATGTTGCTCAGACTCCCCGAAAATATTGTGGCACCCATGTCTGATCCTCCAAAAGTCACTACTTTTGAAGGATCTGTCATTCACACCGTCAAATTTTTTGAAGAGTTCGAGCAACGTAGACCACAATCCCATATCTTTCTTTTATCACCTAGATCTTGATGCTCTATTTAAATCACGACATCCTTTTTCTTGATGGGGTCTTGTTAATAACCCATAGATCTTTCACCTTCACACTATCCAACTCTTTGGGGTCGTAATAGTCTCCCATGAACCAACTGCAACTTCTTGGCACTTTATATCGACTTCTACAAATAGTTTCTTTGAAGTCTTTTAATTTTCATTAAACAAATAGCTGGTACTTGTAACCTAAAGTATGGCAATTGACAATAGTGCTCTTAAGTCTTGATTAGTACTCCATTTCTCCTTTTGGTTAGTGGTATTGTCTGTTGCTGCAAGATACAAGTAAATAGTTTTTTACAATTTCCATAAGATCTCAGGTTCAGATCCCAGTGGAGGAAAAAAACACTACGCGAGTGCTTTTCACAACACCTGTCAGTCTGATGTATTTCATGTTGTAAGACTATGAACAAGACAACTTATTCTTGCAAAACATCTGAGGCCTTTTTGGTTAATTTATATGGCAGCCTCTTCAGGTTTGACTTGGGTGTGCAAAGTGTCTCAGCTTGAACTTTGGAACTTGGAAGACTATTACCAGCTAAATTGTAGAAGTCTCTACCTTCCATCATCCTTGTTTGAAGTATTGGTTTGTGAAATGTTGAACCTCTGATGAATCGATGAATCGTCTAGTATCTACGCTGTCATATATCAACTTCTTGGCTCTGATGTCTTCTGCTCTTTTTCCTAATAGGGGTTAATTTGACACATTAGTGTGTAAGTTTTTCTTTTTTTTTTTGATGAAGTAACTTTGTATTCATAAAAAATCATCATCAAAAGAATGATGAGTTGGGGCACTTACAACGCACAATGGGTGGAACACATCCTTTAGAAAAACTAAAAAGCTTTACAGTTTGCCTAAGAAATCAACTAGAGTTACTACCTCCCCCCACCATATTCTGTTTACACCAAAAAAATAAAAGGCTTAGGCATTTCATTTTGATCTTCTGTGCATTACAGCTTTTGCCTTTAAAACATCTGGTATTCTTTCCTTCCATAAAGTCCACTAGATACAAATTGGAATGTTCATCCACCAATCTTCGCTCTGGCCTCTTCTTCCAATTCCCTTCCAACTGTTGAGTAGCTCCAGGTTTTTTTGACCTAGTAACATTTGTATTTCAGTCAGTACTTAGGTAGTACTGAAAAACCATATTTACAAAAAGAAGAAAAAGATTAAAGTCCTTCCAATGCTAAGCCTGGAACTAGATGGACCCTAAACCATCTATGATTGACTCAGTCTCATTGGTGTAGACATTTGTACACCAAAAACAGAACAACAAATACATTTAAGCTTGTCTTGCCTCAGGTTGTTGTCCCTATTTTCAAGACATCTATCATTTCTCTCTCTCCATATAGTCCACCATATACAAGCAGGGATCATCCTCCATCTTTCTTTGTTTGTACCCAACTCCAGCCTCCTCCCAACTGAAAAGAGTCTCATCAATCTTACTAGGCATCTTCCAAGAAATGCCTCTGAAATTAAGGAAAATCTGCCACAGATGGTCAGTGAAATTGCAGTGTACAAAGAGGTGTTTTACTGTCTCTGTATCCTTACCACAGCTCCAGGATGGTTTTAGGCATTACCCAACTTACTTCCAGAATACGTAAGAACACGTTCCACATATTTGCAGCTGTATCGCAGTGTAGAAACAAATGACTATTTACCTCTGTTTCCTGATCACACATTAATCACCTTGAGCAAATCTGTGAATCTTAGGATATGGGTGATAGATTTTGTTTTGGATGTCCCTTCATATTTTTGATGTAACTACTTAGGAGCACACTATTGGTGTACTTCCTTCTGTTTATAATACCGTGTTAACTTTCTCAAAAAAATCTGTGAATCTCTTCTTTGTAACATCTCAAGAGTTAGGCATGCTCTTCTGATCATAAGCCAAGCGAAACATGGTCTCTACCGCATCAGCTTGTTACCATTTTCCCTCTTTAATTTGATACATTAGTGTCTAATTAACATTTCATGGTCTCTACCGCAATCTTGGAAAACCTAGTTGATCTGTTCTTTTAATTAGCTGGTATTTTTTGCTTAGACATTAATTTTAGTCCATTAATGTTCAGAGAAGTGCTAATGTTAGTCATTGTGGTGCACTTGTTTTGCAGTTTAAGGGATCTTCACCATCTGCTTGCTGGAATAAAGTTTACAAACAGATGAGGAAGACACAAGTTGACAATTTTGATGAATCAATATCTAGCCGTAAAAGTGAAAGGACCTTTGGATCAGGTTCTCATATGTTTGGCTTTTCTCATCCTGAAATTTCGAAACTTATAAAGGTATTATTAGTTTTCTTCTGTTCAACTTTATCTTTTGGTGGTTCTGTTCTTTCGATTTCTGTTCACCATCTTATTATTGAAAAATCCGAGCATGTTTGATATTATTAAGACCATTGACTTTGCAGTTGTCTTATTACAGTCTTATTTTTCTTTGAATACGATCTAAGTGATTATATTATCTTCTGGTTTGTTTCCTCATTCAACACTTTGAAACCGAATCATATCAATTGATAAGATGAGACAGACATTCTATAAACAAATAAGACCATTAAAATGCACTCTATCTTCAAGTGAAGCTGAATATGGTGGAAAGCATCAATTGACAAATGTTATGCCATATAACTATAATAGAATGTATGAAGAGAACAGACTATCCCATTATCTTGTCGCAATGGAAGGCAGCAGATTCTTGTTATGCCTTCGATGATGCATAAATCAAATATAAGTCTATCTTGAATATTTAGAGTTCTTCTTAAATGTGTCTTTATGTATGGATCACAATCTTTATAAATGTGTCTTTATGTATGGATCACAATCTTTAGTTGACCGACCTCAACTTGTTTGGGATTGAGGTCTAGTTGATTGATTGGTAGATAACTACCATATGTCTGCTTATGTACATACTTTTCTCTTCAGACATCGGACCATATGCTTTTTATTTGGCAGTTACATATCTGATTTCATTTTTTTGCGTGGAAAATCACAGTTTTTCTAGTAGCGCAATATGAACGGGAAGTAAGTCATGGTGGTAAAATAAAAGTTGGTTAGTTTTAGGGGAAGAAATGGCTTAGATGAAAAAATGCAATTTTTTTCTAGAGCCTGTATGACGTAGTGCAACCTTTCCAAAATGTTGGGTCCTGTATTGGTTCACTGCTTTGTTTGGTGTATGCTTATCTTATGTAATTTAGAACCAAGGGTATGGCTGGTTCATTCATAATTGTTTGTTTCTATATGTTAGAACAGGAAGAGGTTTATATAATCCTATTGAAATAGGAATAGGTTTATACAATTCTATTAGAATAGGAATATGTTTATACAATCCTATTAGAATAGGAATATGTCTATACAATCCTATTAGAATAGGAATAGGAATACTAAACAGAATCCTTCTTGATAAAGGATTGTATCCTAGGGTCTATAAATAGGGTCTCAATGTAATAATGTAGACATAACAACAATTCAATAATATTCTTTTTCTATATTTCTCTCACTATATTTGTTGAGAACACTAATTCTTTGCTCATTTAGGCCTTGCTTTCACAAACCTAAGAGTTATGTATTGTTTCAGTTGAACATGTTTTATGAGGTTATTTCTGCAGGTGTTGACAAACATATATTTCTCATTGGAGCAATCTTTATAAGATGTTTATATTATATATATAACGTTAAGCTCACTATGATTTAGAAGCCCTTGAGATGTTTCCATTTGCAGTCGCTCTTTTTTTTTTTTTTTTTGAAATTAGTTTCCATTTGCAGTCTTCTATTGATATATATAAGAGTTTTCTGGACATAATATGTTGCATTGTGAAGGTAGGAAGAGATGCACGGACTGAACAGATTTACGGATTTAACTTTATTATGAAGCGATTAATTATTAATTTGTGTCAGAATTATAGGGCATAGGTTCAGAAGAAGCTTGGTAGACGAATAATAACAAGTTGATGGGCATTTAATTCAGGATGTAATGATCATATGACTGTATAACTGTTGACTGGAGAGTGATTAATCTGTGCATGACTTACTTGTATCAGAAAGCTTTGTTCTATATTTTGCTTATGTTTTTTTCCAGTTTCTAAAGCTTATATTATGCTGTCAGGAGTTATCAAAGTCCAAGATTCTTGCAAAATCCTTGAAATTGGCGTCTTCAAAAAATCAAGACTTGCCGGCTGGTTATAGGTCTGTCCGTGTTAAATGGAAAGATCTGGACAAATGCAACGTTTGCCATATGGATGAGGTTAGGAACTGCTTTCATTACTTATGCTCTTTCTTTTTCAGCTTATGCGCTATTTTTGGAGGACTCTTTTACCTATTTTGGTGTTCTTGTTATATATTACTAGTGAAGTTGCATCTGGATAATCTGTATCTTTTTGACTTTGCCTAATTGAGTAGTAACTACGAAATAGTTATTTTGGATCATGCTGATGTAGGTTTATTTCTTACAGGAGTATGAGAATAATTTGTTTTTGCAGTGTGACAAATGCCGAATG</genome_strand>
        <mrna_strand>GGGAAAAAGCTTGAAGAAGTCAGAAGTTGCCCACTTGAATTGGGGGACTTGAAAATAGTTAGCCTTG.......................................................................................................................................................................................................................GAAAAATAGTAGAAGATTCGGAGCTCTTTCGAGATGAGGAATTTATCTGGCCAGAAGGTTATACTGCTGTGAGGAAGTTGCCATCAGTAACAG.....................................................................................ATCCCAGTGTACGTGTATCATATAAGATGGAGGTACTGAGAGATCCTGATTTCCGGACACGACCTTTATTTAGAGTTACATCGGATAGTCGAGAACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................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      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U600408" ref_strand="+" ref_description="SGN-U600408 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|15223166|ref|NP_177207.1| (e_value=2e-18) polygalacturonase, putative [Arabidopsis thaliana]; (*ATH) AT1G70500.1 (e_value=8e-21)  Symbol: None | polygalacturonase, putative / pectinase, putative, similar to polygalacturonase (Cucumis sativus)  GI:6624205; contains Pfam profile PF00295: Glycosyl hydrolases family 28 (polygalacturonases) | chr1:26570242-26572392 REVERSE | Aliase... ; (*SWP) sp|P35336|PGLR_ACTDE (e_value=1e-13) Polygalacturonase OS=Actinidia deliciosa; ">
      <seq>gcgaacagttcgatttcaaaatgtacaaatggaagatgtttcaaatccaatcattatagatcaattctactgcgactcacaaaaaccttgtcaaaatcagacatctgcagttgagataagtgaagtactctatcgtaacgttagtggaacaacaaagagcaaaaaggcaataaattcgcgtgtagtgacactggccttgaccatattactctgacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="+" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="117991" stop="118925"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118290" g_stop="118389" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118390" i_stop="118503" i_length="114">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="118504" g_stop="118625" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="217" r_length="117" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="+" ref_id="SGN-U600408" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>222</cumulative_length_of_scored_exons>
        <coverage percentage="1.023" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U600408" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118290" e_stop="118389"/>
          <exon e_start="118504" e_stop="118625"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAACAGTTCGATTTCAAAATGTACAAATGGAAGATGTTTCAAATCCAATCATTATAGATCAATTCTACTGCGACTCACAAAAACCTTGTCAAAATCAGGTAGATATACATCCTCTGTTTCAACGTGTTTGTCTTACTTCCCTTTTTAGTCTGTTTTAAAAAGAGTTGTGAGAGAAGTATGACAAAATGTGTGTTGTTTATTTGACATTACAGACATCTGCAGTTGAGATAAGTGAAGTACTCTATCGTAACGTTAGTGGAACAACAAAGAGCAAAAAGGCAATGAAATTCGCGTGTAGTGACACTGTGCCTTGTAGCCATATTACTCTGGACAA</genome_strand>
        <mrna_strand>GCGAACAGTTCGATTTCAAAATGTACAAATGGAAGATGTTTCAAATCCAATCATTATAGATCAATTCTACTGCGACTCACAAAAACCTTGTCAAAATCAG..................................................................................................................ACATCTGCAGTTGAGATAAGTGAAGTACTCTATCGTAACGTTAGTGGAACAACAAAGAGCAAAAAGGCAAT-AAATTCGCGTGTAGTGACACTG-GCCTTG-A-CCATATTACTCT-GACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U579206" ref_strand="+" ref_description="SGN-U579206 Tomato 200607#2 [18 ESTs aligned] (*GB) gi|157353351|emb|CAO45277.1| (e_value=5e-167) unnamed; (*ATH) AT1G10840.1 (e_value=4e-157)  Symbol: None | eukaryotic translation initiation factor 3 subunit 3 / eIF-3 gamma / eIF3h (TIF3H1), identical to SP:Q9C5Z2 Eukaryotic translation initiation factor 3 subunit 3 (eIF-3 gamma) (eIF3 p38 subunit) (eIF3h) {Arabidopsis thaliana}; contains... ; (*SWP) sp|Q9C5Z2|EIF3H_ARATH (e_value=4e-156) Eukaryotic translation initiation factor 3 subunit H OS=Arabidopsis thaliana GN=TIF3H1; ">
      <seq>gtattgcaaggagtgggctggcccattaatagtaattgccgctttcgtctcgtctcctcattttgttcctccagcaattagggttttggattttggatttgcttcttgtagaattgctccgaagtcgagaagcttcggattcagtcaattttctgctcaatttctatcatcatggcaaatcctacaggacggtcgtttttgcaagtggcagctacagaggaggctgttgcgccaccactcagagttgttcagattgaaggactggttattttgaaaataatcaagcattgccaagagttttcaccggctttggtcactggacaactccttggattggatgttggaagtgttcttgaagtcactaactgttttccttttccggttcgcgaggaagatgaggagattgaagccgagggtgctaattatcaacttgaaatgatgcgatgcctgagggaggttaatgttgacaacaacaccgttggttggtatcaatcaactttgtttggttcatatcagacagtggaactgatagagaccttcatgaattaccaggagaatataaaacgttgtgtctgcataatctatgatccttctagatccaaccaaggtgtcttagctttgaaagccttgaagctttctgattctttcatggaactctacaagagtaacaactttactggagagaagctgagagaaaagaatctttcatgggttgacatctttgaagagataccaataaaagtttcgaattctgcactcattagtgcctttatgactgaattggaacccgatacacctgtaactcagtgtgattatgaacgcttacaattatcaaccaatccatatttggagaggaatgtggaatttttgattgaatgcatggatgacttgtcgatggagcagcaaaagttccaattctattaccggaatctttctcgtcaacaagctcagcagcaagcttggcttcagaagaggaggactgagaacatggcacgtaaagctgcaggagaagagctactgccagaagaggatccctctaatcctgtctttaagccactcccagagccctcacggttggatagctttctcataactaatcaaatttcaaattactgcaaccagattaatggagttgcgggacaaagcctcagtagactacatctgatgaaggctttgcacgagaactgagcaagttttgcgttggcaatttgtaccttagatttttgtgccttttttttcaactttactgatgtgagagggaaagagaatgacctttatctctgttaggtgtctttagtttttgcttttacattcttctatgattggcaatcaagtgtagcctaccttgaatcatatatgtgaagatttacatctagtccacagagaaggaatagggatctatgtatcgatgaccttattgttttttgatcgattgtgtggaaatggaagattaaaaatctctcaattaccctcaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="+" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="119224" stop="125759"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119524" g_stop="119704" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119705" i_stop="119799" i_length="95">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119800" g_stop="119882" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="264" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119883" i_stop="121393" i_length="1511">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.610" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121394" g_stop="121510" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="381" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121511" i_stop="121598" i_length="88">
            <donor d_prob="0.838" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121599" g_stop="121702" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="485" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121703" i_stop="122260" i_length="558">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="122261" g_stop="122327" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="552" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="122328" i_stop="123522" i_length="1195">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="123523" g_stop="123656" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="553" r_stop="686" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="123657" i_stop="123771" i_length="115">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="123772" g_stop="123820" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="687" r_stop="735" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="123821" i_stop="124255" i_length="435">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.780" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="124256" g_stop="124327" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="736" r_stop="807" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="124328" i_stop="124412" i_length="85">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.869" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="124413" g_stop="124514" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="808" r_stop="909" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="124515" i_stop="124594" i_length="80">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="124595" g_stop="124662" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="910" r_stop="977" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="124663" i_stop="124850" i_length="188">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="124851" g_stop="125003" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="978" r_stop="1130" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="125004" i_stop="125111" i_length="108">
            <donor d_prob="0.899" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="125112" g_stop="125460" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="1131" r_stop="1479" r_length="349" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="+" ref_id="SGN-U579206" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1479</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U579206" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119524" e_stop="119704"/>
          <exon e_start="119800" e_stop="119882"/>
          <exon e_start="121394" e_stop="121510"/>
          <exon e_start="121599" e_stop="121702"/>
          <exon e_start="122261" e_stop="122327"/>
          <exon e_start="123523" e_stop="123656"/>
          <exon e_start="123772" e_stop="123820"/>
          <exon e_start="124256" e_stop="124327"/>
          <exon e_start="124413" e_stop="124514"/>
          <exon e_start="124595" e_stop="124662"/>
          <exon e_start="124851" e_stop="125003"/>
          <exon e_start="125112" e_stop="125460"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATTGCAAGGAGTGGGCTGGCCCATTAATAGTAATTGCCGCTTTCGTCTCGTCTCCTCATTTTGTTCCTCCAGCAATTAGGGTTTTGGATTTTGGATTTGCTTCTTGTGGAATTGCTCCGAAGTCGAGAAGCTTCGGATTCAGTCAATTTTCTGCTCAATTTCTATCATCATGGCAAATCGTACGCATAATTTTCCTTATTTGATTCTTTGCGAGGAATTTTTTGGGTACAATATGTGTAGTTAGCGATTAACCCCTTCAATTTGATTGATACAGCTACAGGACGGTCGTTTTTGCAAGTGGCAGCTACAGAGGAGGCTGTTGCGCCACCACTCAGAGTTGTTCAGATTGAAGGACTGGTACTATGCACTACTATCTATCTCTTTTTTTGTTTTTAGTATCTGTGCTGTCCGGGTCAGCTTATATGTGATTCCTGGGGTATCGGGTGCCTGATACATCCCATTGTGCTAAACGGGTAACTATGTCCACCAAGGTTTGGACAGGTGTGAAAAGATCAGCTTTGTGTTTTTCTTTGGGGGAATTGAACTTGATACGTGATAGTTCCGTACACACTTTATTCACCTCTAGGTTCACCAATAGGTGTACTATCTCTTCATTTTTTAAAAAAAGATTTTTTTTTTGTTTATGTGTATTTAGTTTGTGGAATCATAGATTAAGAAGTTGAGATTTCAATTGAAGCTCAAGAGCTACCTAGTTAGGTTCAGTGACAATCCCAGAAATCCAACTCAAAAGTAGAAACAAAAGGAAAAGAACTGAGTGATCTCTTGCCCTAATGGGGTGGTTTGCAGTCTTCTTGAAAATCAAGTTTCGAATCCCAGAACAGAGAATAATAGGTGAATTGTTACCTCTGCCTAAACTTGGGTGGATTTGATGTTTCTTCCCTGATGGGAGGTAGCATGTACCCTGTGTGTTAGCTTGCTCTTACTAATTTCACTGATGCTAACTGAACTAGCTACCACAACTTCCTGCTAATTGCCTAACTATAGCTGCATATTAGGCTATTAGCTCTTCTATTCCCCAACTATTGTTTGATATGCTGACCTTTCTCCTGTTCTTTCCTCCATATTCTTTAGATTATTTTTTTAGTTATTTATGCATCTGTACCATCCTTGTTGTTTACCCTTTGTTCACAAGAATGACCATTTGGCAAGAATACTTTTCGTCTAAACCATGAGTTATGCAATCAATCCTCAATGTCAATTGCTGCATTACCTTTAACCTTGATGTCTCCTACAAAATAATGTAGATAATTTCTTTGCAAGGATCAAACAAATTATACCCTGCATGCATACATTGCACCCACATAGTTGATAGAATTGTAGTCATCCCAAACTCTGCAAGAGGGGTACAAAAGACTCACAAGCAAAAGAGGGTGAAACAGCCAATTGATGTAAGGAGCAAGATTGTGGGATGAACTTGCTGCAACTACTTAGCCGTACTTGTCTGTTATTTGTTGTTTCTAACAGCATCATTGTGAAAAGTTAGTTCATAGACTAGTAGAGGTTCTTAAGTATCCCGGGCATGCAGAGTTCTTCCTTCTACTGATGTTAGCTTCTGCAACTTTCTTCTATTGAGAAAGGTGGAGCATCAAACCTTTTTCTTTTGATTTAAGTGGACACACTATTTTGGACAAACCACAAGGCATAGTTGGACATGTAAAAAGGGATCAAAGGAGTAATATTAATTTATGCCCTTAATTTTGTATTACAATGTTCCAAGAGATGTGACGTTGCACAGCAATGGGTGGGAAAAAAGTGATTTGTTCTATCTTCTTAGAGTAATAAAATGTATCTGCATCCGTTGACTGCCTTCTCATGTGTAGTTTCCTGAAGTTAACTCTGTAATACAGGTTATTTTGAAAATAATCAAGCATTGCCAAGAGTTTTCACCGGCTTTGGTCACTGGACAACTCCTTGGATTGGATGTTGGAAGTGTTCTTGAAGTCACTAACTGTTTTCCTTTTCCGGTATGGTGAAGTCTGGTGTTTCTTGCTTCTTCTTTATACAGTTTCGATATTATTTGAACTAACTCTTTTTCACATCTATTTTACTCAGGTTCGCGAGGAAGATGAGGAGATTGAAGCCGAGGGTGCTAATTATCAACTTGAAATGATGCGATGCCTGAGGGAGGTTAATGTTGACAACAACACCGTTGGTTGGTAAGAGAGCTTTTTGACTATTAAGCCATCATTTAATCTGGTTAGAACTATGAGGTTCCTTCTTTCTAATTAAGAAATTATTTTTGTCTTTGTGCTAGTTCTCTATTATACTCATTGCTAACCTTTTATTCAGGCAAACATTCTTTTTCTGGGCTGGTGGTACTGTGTGATATGCATTTTCTTTCATCACTATTTCATTTATATTTAAGTATAAACATCTTTTTTCTTGAAATGCTTAGAATATGTATATCTATACCCTTAAGTCTAGAAATGGACAATGTACGACATTTGATGGCCTGATTGCATTTCCGCAGCCTAAAAAGTTACAGTGTTTAAATTTTGCCAGCTCCAAGGCAGTGAAGAGAAAGTTATTATCAAAAAAGGGAGTAACAAAACTGTCATACATGTTAACAATAATAAAACTGTCTTACTTGTTACACAGTAGTGAGAAAGACATGAAAAGCTTGCTCTACCTTTCTTTCCTACATAATTGTCATCTTAACTTTTACTATTACTAATTTGCTCATAATATGGACCTCATTGATGGTTATTTTCCAGGTATCAATCAACTTTGTTTGGTTCATATCAGACAGTGGAACTGATAGAGACCTTCATGAATTACCAGGTATCCATCTCTATGTCCATCTCTCATTGTTGGATTCTGAACTTTCAGTTTCTGCAGCGACCTTAGGTATACTGCACTTATCCTGCAAGTCATTTTCAGTTTAGATAATGTCATGTGGCAACCCCCTTTGTGCTGGCCCTAGGAAGAAAAGGGAGAAAGGATGAAATTAACAACACTGTAGAACTGTTTTTTGTAGTGATGCTAAATGAGTCCAAGGCATTCCAAACTGTGTTACCATTTTAGTAAAGTTTAAATACCTGGGCTCTATGCGTGATAGACCAGTGCATCATGCAAATGACCTGCAGATTAGCAAGACTAATGCCCTGAAGTTCTTTAACCACCCGTTTGCAGCTTAAGACTCGAACAAAATCTAGTGACTGATCAGACCGCCAACATATGTTAGGTAAAAGATAACTAAAACCTTGTTGCTCTAGTGGAATAACAAATGCAAAATGGTTTTTTTGTTAGCCTTTAATGAATGTAATTAGCTAAGGACAATGTAAATATACTTATCTTTCAATGGATGTAACCGTTTTGATTGGCAAGGATGAGGAAAAGCTCATGGAACCAGATCAAACCTATATGCAGGGAACGAGTCAAGTTTGAGTGTGAGCCTTGTAAATTTCAGATTCCAACAATCAATCATGTTGGATAGTGAACTTTGAAGAAATTAGAAAGTGATCATCCATTACCCAAAATTAGATAGTTTATGCCCCACACTTCAACAGGTACTGAAGGAGTAAATGATTTTTTTTGCGATAATGGAGGTATCTGGTTACCTAGCAAGGCAAGCCCCAAAGACAAGGATATGGAGTCCTTATTATTAAATGTAGCATGGAAATGTAATTCATGTTGGAATTTGAGGGGTAAAATTGCTGCTCAAGGTCCACTGAGATCAATTGCTTGAGTCAAACATCCATGAATAAGATCTTAAAGTCAAATGCCACTAGCTGTTGTCAATTCTTGCCTGAGTTATTTATTATCCTTTGCATGGAAAACCTACTAGCGTTCCTCATTTGTTGATCTTTTAAATATATAACACTTGGTACTGTAAATAAAGTAATATTCTTTCTGATTTTTTTCTTAATCTTTTTTCTTAAGATGTTGGCTTGAATAGGTGCTTCTGTATTTTTCATTAGTTGGTATTGGATGTGAACAATTCATTGTACTTAGACTCTGATGTTTGTGATTGCAGGAGAATATAAAACGTTGTGTCTGCATAATCTATGATCCTTCTAGATCCAACCAAGGTGTCTTAGCTTTGAAAGCCTTGAAGCTTTCTGATTCTTTCATGGAACTCTACAAGAGTAACAACTTTACTGGAGAGAAGTATGTTTATTCTCGAGTTGCTCCTTTTTTACATTCCCTCTCGAAATAGTTGTTGGTACTAGTTTAAGTAAAAGTAAACTCATTTTAATTTCTGATATTTGTTTTTTGGTTTTAGGCTGAGAGAAAAGAATCTTTCATGGGTTGACATCTTTGAAGAGATACCAGTATGATTCTTCTAACCATTTGTATTCTGTTTTCTCTTTGGCACTTGCATCATCATATGTAGATTCTTTTTCAAGTGACATTCTCTGCTTCAAAACCTGTTACCATTCTGCATGTCAGAGACAGTTGTATTCGTTTGGAGATCGGTTGTTTGAGAAAATAAAAATATAGTTCTGATACATTAGCCTTTTTTCCCTAGGGGACCCTTTTTCTTTTTTCCTTCGTTGTGTTCTTGAAAATAGTTCTTCCTCCTTTAAGATTTGATACGTGCATTGCTGCCACACATTTTCTTGGTTTGAACATTATTTTGAGTAATACCATCATCATATAGTGATTCTACCTGCCTGGTGTTAGTATAGGTACATTGTTCATAGGTTAGTAATTCAGCAGAAGTCTTCAACTTTACTGCAGAAGTTAATTTCGTCTTTTTTTTACAGATAAAAGTTTCAAATTCTGCACTCATTAGTGCCTTTATGACTGAATTGGAACCCGATACACCTGTAACTCAGGTAATGTAACTTAAGTTTGGCAGAATACTGAATATTTATATATGTGGCCAATCTGTAATACTGACAATTTTCTTCCTTTTGTCAGTGTGATTATGAACGCTTACAATTATCAACCAATCCATATTTGGAGAGGAATGTGGAATTTTTGATTGAATGCATGGATGACTTGTCGATGGAGCAGCAAAAGGTTTGTCTTTCCTCTTCCTGGGTCAATCTTTCCTTTTATTGTGTTGTGATTGTTTACTAACACTAGTGCTTTATTTGCAGTTCCAATTCTATTACCGGAATCTTTCTCGTCAACAAGCTCAGCAGCAAGCTTGGCTTCAGAAGAGGAGGTATCTTTTTTATAATGGCATATTCGAGTAGTTTGTCACTTATTTAGATCCTCAGATGCTTTGTCACCTTGCGGTTAAGCTTGAATCTTTTGCTGTGCTATAATTCTGGCGAACTTTGTATATTATAATTCTTTATGATTAAAGATGCTTCGCTGTTCACATTTTGTACTGGCCTCTGTTATTTACAGGACTGAGAACATGGCACGTAAAGCTGCAGGAGAAGAGCTACTGCCAGAAGAGGATCCCTCTAATCCTGTCTTTAAGCCACTCCCAGAGCCCTCACGGTTGGATAGCTTTCTCATAACTAATCAAATTTCAAATTACTGCAACCAGATTAATGGGTAAGTTGCGGTCTTGTTTGCCATTATCTTTTCTGTTGCTGGGTTTTTTTTTCTAGCCTGTGATATTTCGTTTCTTCTTGTATGAACTTGTTTATATGTTGATTGCAGAGTTGCGGGACAAAGCCTCAGTAGACTACATCTGATGAAGGCTTTGCACGAGAACTGAGCAAGTTTTGCGTTGGCAATTTGTACCTTAGATTTTTGTGCCTTTTTTTTCAACTTTACTGATGTGAGAGGGAAAGAGAATGACCTTTATCTCTGTTAGGTGTCTTTAGTTTTTGCTTTTACATTCTTCTATGATTGGCAATCAAGTGTAGCCTACCTTGAATCATATATGTGAAGATTTACATCTAGTCCACAGAGAAGGAATAGGGATCTATGTATCGATGACCTTATTGTTTTTTGATCGATTGTGTGGAAATGGAAGATTAAAAATCTCTCAATTACCCTCATTAAT</genome_strand>
        <mrna_strand>GTATTGCAAGGAGTGGGCTGGCCCATTAATAGTAATTGCCGCTTTCGTCTCGTCTCCTCATTTTGTTCCTCCAGCAATTAGGGTTTTGGATTTTGGATTTGCTTCTTGTAGAATTGCTCCGAAGTCGAGAAGCTTCGGATTCAGTCAATTTTCTGCTCAATTTCTATCATCATGGCAAATC...............................................................................................CTACAGGACGGTCGTTTTTGCAAGTGGCAGCTACAGAGGAGGCTGTTGCGCCACCACTCAGAGTTGTTCAGATTGAAGGACTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTTTGAAAATAATCAAGCATTGCCAAGAGTTTTCACCGGCTTTGGTCACTGGACAACTCCTTGGATTGGATGTTGGAAGTGTTCTTGAAGTCACTAACTGTTTTCCTTTTCCG........................................................................................GTTCGCGAGGAAGATGAGGAGATTGAAGCCGAGGGTGCTAATTATCAACTTGAAATGATGCGATGCCTGAGGGAGGTTAATGTTGACAACAACACCGTTGGTTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCAATCAACTTTGTTTGGTTCATATCAGACAGTGGAACTGATAGAGACCTTCATGAATTACCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAATATAAAACGTTGTGTCTGCATAATCTATGATCCTTCTAGATCCAACCAAGGTGTCTTAGCTTTGAAAGCCTTGAAGCTTTCTGATTCTTTCATGGAACTCTACAAGAGTAACAACTTTACTGGAGAGAA...................................................................................................................GCTGAGAGAAAAGAATCTTTCATGGGTTGACATCTTTGAAGAGATACCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAAGTTTCGAATTCTGCACTCATTAGTGCCTTTATGACTGAATTGGAACCCGATACACCTGTAACTCAG.....................................................................................TGTGATTATGAACGCTTACAATTATCAACCAATCCATATTTGGAGAGGAATGTGGAATTTTTGATTGAATGCATGGATGACTTGTCGATGGAGCAGCAAAAG................................................................................TTCCAATTCTATTACCGGAATCTTTCTCGTCAACAAGCTCAGCAGCAAGCTTGGCTTCAGAAGAGGAG............................................................................................................................................................................................GACTGAGAACATGGCACGTAAAGCTGCAGGAGAAGAGCTACTGCCAGAAGAGGATCCCTCTAATCCTGTCTTTAAGCCACTCCCAGAGCCCTCACGGTTGGATAGCTTTCTCATAACTAATCAAATTTCAAATTACTGCAACCAGATTAATGG............................................................................................................AGTTGCGGGACAAAGCCTCAGTAGACTACATCTGATGAAGGCTTTGCACGAGAACTGAGCAAGTTTTGCGTTGGCAATTTGTACCTTAGATTTTTGTGCCTTTTTTTTCAACTTTACTGATGTGAGAGGGAAAGAGAATGACCTTTATCTCTGTTAGGTGTCTTTAGTTTTTGCTTTTACATTCTTCTATGATTGGCAATCAAGTGTAGCCTACCTTGAATCATATATGTGAAGATTTACATCTAGTCCACAGAGAAGGAATAGGGATCTATGTATCGATGACCTTATTGTTTTTTGATCGATTGTGTGGAAATGGAAGATTAAAAATCTCTCAATTACCCTCAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U599077" ref_strand="+" ref_description="SGN-U599077 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157353350|emb|CAO45276.1| (e_value=6e-32) unnamed; (*ATH) AT3G28040.1 (e_value=2e-26) | Symbol: None | leucine-rich repeat transmembrane protein kinase, putative, contains Pfam profiles: PF00560 leucine rich repeat, PF00069 eukaryotic protein kinase domain | chr3:10436294-10439628 FORWARD | Aliases: MMG15.21; ">
      <seq>gtgatactcaatgatcatgtgagagttttgcttgagcaaggcaatgtgttggagtgtgttgatccaactatgaatacttatcctgaagaggaagttttgcctgttctgaagttggcattggtgtgcacttctcaaataccatcaagtaggccttcaatggctgaagtggttcaaatcttgcaggtcatcaaaacacctgttcctcaaagaatggaagtatactaaaacttgttacaaacttgatgaatttccctttctctttgactttctatcatatcctattgttgttatcttaacctcctaatctgatgtttttggactagatagtgatagagagagttttgtacttctctgtcatttgatgaaatatatgagaggttggttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0059I05-058dX/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0059I05.3" temp_strand="-" temp_description="C09HBa0059I05.3  EF647599.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0059I05 upload_account_name:spain">
        <position start="126812" stop="125829"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126513" g_stop="126129" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0059I05.3" gen_strand="-" ref_id="SGN-U599077" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0059I05.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U599077" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126513" e_stop="126129"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATACTCAATGATCATGTGAGAGTTTTGCTTGAGCAAGGCAATGTGTTGGAGTGTGTTGATCCAACTATGAATACTTATCCTGAAGAGGAAGTTTTGCCTGTTCTGAAGTTGGCATTGGTGTGCACTTCTCAAATACCATCAAGTAGGCCTTCAATGGCTGAAGTGGTTCAAATCTTGCAGGTCATCAAAACACCTGTTCCTCAAAGAATGGAAGTATACTAAAACTTGTTACAAACTTGATGAATTTCCCTTTCTCTTTGACTTTCTATCATATCCTATTGTTGTTATCTTAACCTCCTAATCTGATGTTTTTGGACTAGATAGTGATAGAGAGAGTTTTGTACTTCTCTGTCATTTGATGAAATATATGAGAGGTTGGTTC</genome_strand>
        <mrna_strand>GTGATACTCAATGATCATGTGAGAGTTTTGCTTGAGCAAGGCAATGTGTTGGAGTGTGTTGATCCAACTATGAATACTTATCCTGAAGAGGAAGTTTTGCCTGTTCTGAAGTTGGCATTGGTGTGCACTTCTCAAATACCATCAAGTAGGCCTTCAATGGCTGAAGTGGTTCAAATCTTGCAGGTCATCAAAACACCTGTTCCTCAAAGAATGGAAGTATACTAAAACTTGTTACAAACTTGATGAATTTCCCTTTCTCTTTGACTTTCTATCATATCCTATTGTTGTTATCTTAACCTCCTAATCTGATGTTTTTGGACTAGATAGTGATAGAGAGAGTTTTGTACTTCTCTGTCATTTGATGAAATATATGAGAGGTTGGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>20</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="3735" PGL_stop="725"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3735" e_stop="3294"/>
            <exon e_start="1923" e_stop="725"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.986" acc_prob="0.956" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="3735" e_stop="3294" e_length="442"/>
          </exon>
          <intron i_serial="1" don_prob="0.986" acc_prob="0.956">
            <gDNA_intron_boundary i_start="3293" i_stop="1924" i_length="1370"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="1923" e_stop="725" e_length="1199"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3735" stop="3294"/>
              <exon start="1923" stop="725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U576717" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGCCTTTTGACTTAAAAAGATCTCAAATTATTCAATCAACAATCCCAAAAAATTCTCTAAACTAAAAAGATCAATTTTTTTTCTTGAAAAATTTCAATGGCGAAAAAAGCAGTATTAATTGGAATCAATTATCCAGGAACAAAAGCAGAACTTAGAGGTTGTATTAACGATGTTAAGCGAATGTACAATTGTTTACTTAATCGTTACGGATTTGCTGAGGAAGACATTACTGTTCTTATAGATACTGATGATTCTTACACACAACCAACTGGTCGGAATATACGTAAAGCTTTATCGGATCTTGTTGGATCTGCTGAATCAGGGGATTGTTTGTTTGTGCATTACAGTGGACATGGAACTAGGTTACCTGCTGAAACGGGTGAAGAAGATGATACTGGTTTTGATGAGTGTATTGTTCCTTGTGATATGAATCTTATTACAG : ATGATGATTTTAGAGAGCTCGTTGACAAAGTTCCTGAAGGTTGCCAGATCACAATTGTATCTGACTCATGCCACAGTGGTGGCCTCATTGACAAAGCTAAAGAGCAGATAGGGGAGAGCCACAAGCAAGGTGATGACGATGAAGGCCATGGATCTGGTTTTGGATTCAAGAATTTCTTACGTCGAAATGTTGAAGATGCATTTGAATCCCGGGGTATCCACCTTCCAGGTCGCCACCATCGCCGTGAGGAAGAAGAGGAGAATTTTGCTGAGAGTAGTGTGATTGAGACGGAAGACGGTGATCAAGTTCATGTGAAGAGCAAGTCCTTGCCTCTTTCCACTCTCATCGAGATACTTAAGCAGAAAACTGGTAAGGATGATATTGATGTTGGGAAACTTAGGCCAACACTCTTTGACGTCTTTGGCGAAGATGCAAGTCCTAAGGTGAAGAAATTCATGAAAATCATTTTTAACAAGCTACAAAAGAATAACGAGCAGGGTGGAGGCGGCGGGTTCATGGGTATGGTTGGTAACTTGGCTCAAGAGTTTCTGAAACAGAAACTTGATGAAAATGATGAGAGCTATGCAAAACCGGCCATGGAAACACACGTTGAAGGTAAACAGGAGGTTTATGCCGGTTCAGGTAATAGAGGTCTTCCAGACAGTGGCATTCTCGTCAGTGGGTGCCAAACAGACCAAACATCTGCGGATGCAACCCCTGCAGGCGGAGAGTCTTATGGTGCTCTAAGCAACGCAATTCAGGAAATCCTGGCCGAATCAGATGGTCCAGTCACCAATGAGGAGCTTGTTAGCAAGGCTAGGAAAAAGATGCAGAAACAAGGCTTCACACAACGCCCAGGCCTCTACTGCGATGATCATCACGTTGATGCTCCTTTTGTTTGTTGATTCTACTGTGCTATGCCTTCTCGAGTAGCTGTTGAAATACGACTGTGAAGTCAACGAGGTGTTATATAGCTACATCCTTTTGTGTATTTGTGTGATTGTTTGTGCTAATGTTGGAGTAGCTCTTTTACTCTGGTGTTTCAGTAGAACCATGCTCCATCATGTGAATGTGTACTATTTGGCTCTTTTTTTTTTCTTTTAAATTTGGTCAGAGAATAAGGTATTAAAGAACCACAGTTTTCGGTATTGTTTAGGATATTTGAAAGTTAAATCTGGAGAACTTGTTTGTATACTGAA</gDNA_template>
            <first_frame> S  L  L  T  *  K  D  L  K  L  F  N  Q  Q  S  Q  K  I  L  *  T  K  K  I  N  F  F  S  *  K  I  S  M  A  K  K  A  V  L  I  G  I  N  Y  P  G  T  K  A  E  L  R  G  C  I  N  D  V  K  R  M  Y  N  C  L  L  N  R  Y  G  F  A  E  E  D  I  T  V  L  I  D  T  D  D  S  Y  T  Q  P  T  G  R  N  I  R  K  A  L  S  D  L  V  G  S  A  E  S  G  D  C  L  F  V  H  Y  S  G  H  G  T  R  L  P  A  E  T  G  E  E  D  D  T  G  F  D  E  C  I  V  P  C  D  M  N  L  I  T   : D  D  D  F  R  E  L  V  D  K  V  P  E  G  C  Q  I  T  I  V  S  D  S  C  H  S  G  G  L  I  D  K  A  K  E  Q  I  G  E  S  H  K  Q  G  D  D  D  E  G  H  G  S  G  F  G  F  K  N  F  L  R  R  N  V  E  D  A  F  E  S  R  G  I  H  L  P  G  R  H  H  R  R  E  E  E  E  E  N  F  A  E  S  S  V  I  E  T  E  D  G  D  Q  V  H  V  K  S  K  S  L  P  L  S  T  L  I  E  I  L  K  Q  K  T  G  K  D  D  I  D  V  G  K  L  R  P  T  L  F  D  V  F  G  E  D  A  S  P  K  V  K  K  F  M  K  I  I  F  N  K  L  Q  K  N  N  E  Q  G  G  G  G  G  F  M  G  M  V  G  N  L  A  Q  E  F  L  K  Q  K  L  D  E  N  D  E  S  Y  A  K  P  A  M  E  T  H  V  E  G  K  Q  E  V  Y  A  G  S  G  N  R  G  L  P  D  S  G  I  L  V  S  G  C  Q  T  D  Q  T  S  A  D  A  T  P  A  G  G  E  S  Y  G  A  L  S  N  A  I  Q  E  I  L  A  E  S  D  G  P  V  T  N  E  E  L  V  S  K  A  R  K  K  M  Q  K  Q  G  F  T  Q  R  P  G  L  Y  C  D  D  H  H  V  D  A  P  F  V  C  *  F  Y  C  A  M  P  S  R  V  A  V  E  I  R  L  *  S  Q  R  G  V  I  *  L  H  P  F  V  Y  L  C  D  C  L  C  *  C  W  S  S  S  F  T  L  V  F  Q  *  N  H  A  P  S  C  E  C  V  L  F  G  S  F  F  F  L  L  N  L  V  R  E  *  G  I  K  E  P  Q  F  S  V  L  F  R  I  F  E  S  *  I  W  R  T  C  L  Y  T  E </first_frame>
            <second_frame>  A  F  *  L  K  K  I  S  N  Y  S  I  N  N  P  K  K  F  S  K  L  K  R  S  I  F  F  L  E  K  F  Q  W  R  K  K  Q  Y  *  L  E  S  I  I  Q  E  Q  K  Q  N  L  E  V  V  L  T  M  L  S  E  C  T  I  V  Y  L  I  V  T  D  L  L  R  K  T  L  L  F  L  *  I  L  M  I  L  T  H  N  Q  L  V  G  I  Y  V  K  L  Y  R  I  L  L  D  L  L  N  Q  G  I  V  C  L  C  I  T  V  D  M  E  L  G  Y  L  L  K  R  V  K  K  M  I  L  V  L  M  S  V  L  F  L  V  I  *  I  L  L  Q  :  M  M  I  L  E  S  S  L  T  K  F  L  K  V  A  R  S  Q  L  Y  L  T  H  A  T  V  V  A  S  L  T  K  L  K  S  R  *  G  R  A  T  S  K  V  M  T  M  K  A  M  D  L  V  L  D  S  R  I  S  Y  V  E  M  L  K  M  H  L  N  P  G  V  S  T  F  Q  V  A  T  I  A  V  R  K  K  R  R  I  L  L  R  V  V  *  L  R  R  K  T  V  I  K  F  M  *  R  A  S  P  C  L  F  P  L  S  S  R  Y  L  S  R  K  L  V  R  M  I  L  M  L  G  N  L  G  Q  H  S  L  T  S  L  A  K  M  Q  V  L  R  *  R  N  S  *  K  S  F  L  T  S  Y  K  R  I  T  S  R  V  E  A  A  G  S  W  V  W  L  V  T  W  L  K  S  F  *  N  R  N  L  M  K  M  M  R  A  M  Q  N  R  P  W  K  H  T  L  K  V  N  R  R  F  M  P  V  Q  V  I  E  V  F  Q  T  V  A  F  S  S  V  G  A  K  Q  T  K  H  L  R  M  Q  P  L  Q  A  E  S  L  M  V  L  *  A  T  Q  F  R  K  S  W  P  N  Q  M  V  Q  S  P  M  R  S  L  L  A  R  L  G  K  R  C  R  N  K  A  S  H  N  A  Q  A  S  T  A  M  I  I  T  L  M  L  L  L  F  V  D  S  T  V  L  C  L  L  E  *  L  L  K  Y  D  C  E  V  N  E  V  L  Y  S  Y  I  L  L  C  I  C  V  I  V  C  A  N  V  G  V  A  L  L  L  W  C  F  S  R  T  M  L  H  H  V  N  V  Y  Y  L  A  L  F  F  F  F  *  I  W  S  E  N  K  V  L  K  N  H  S  F  R  Y  C  L  G  Y  L  K  V  K  S  G  E  L  V  C  I  L   </second_frame>
            <third_frame>   P  F  D  L  K  R  S  Q  I  I  Q  S  T  I  P  K  N  S  L  N  *  K  D  Q  F  F  F  L  K  N  F  N  G  E  K  S  S  I  N  W  N  Q  L  S  R  N  K  S  R  T  *  R  L  Y  *  R  C  *  A  N  V  Q  L  F  T  *  S  L  R  I  C  *  G  R  H  Y  C  S  Y  R  Y  *  *  F  L  H  T  T  N  W  S  E  Y  T  *  S  F  I  G  S  C  W  I  C  *  I  R  G  L  F  V  C  A  L  Q  W  T  W  N  *  V  T  C  *  N  G  *  R  R  *  Y  W  F  *  *  V  Y  C  S  L  *  Y  E  S  Y  Y  R :   *  *  F  *  R  A  R  *  Q  S  S  *  R  L  P  D  H  N  C  I  *  L  M  P  Q  W  W  P  H  *  Q  S  *  R  A  D  R  G  E  P  Q  A  R  *  *  R  *  R  P  W  I  W  F  W  I  Q  E  F  L  T  S  K  C  *  R  C  I  *  I  P  G  Y  P  P  S  R  S  P  P  S  P  *  G  R  R  G  E  F  C  *  E  *  C  D  *  D  G  R  R  *  S  S  S  C  E  E  Q  V  L  A  S  F  H  S  H  R  D  T  *  A  E  N  W  *  G  *  Y  *  C  W  E  T  *  A  N  T  L  *  R  L  W  R  R  C  K  S  *  G  E  E  I  H  E  N  H  F  *  Q  A  T  K  E  *  R  A  G  W  R  R  R  V  H  G  Y  G  W  *  L  G  S  R  V  S  E  T  E  T  *  *  K  *  *  E  L  C  K  T  G  H  G  N  T  R  *  R  *  T  G  G  L  C  R  F  R  *  *  R  S  S  R  Q  W  H  S  R  Q  W  V  P  N  R  P  N  I  C  G  C  N  P  C  R  R  R  V  L  W  C  S  K  Q  R  N  S  G  N  P  G  R  I  R  W  S  S  H  Q  *  G  A  C  *  Q  G  *  E  K  D  A  E  T  R  L  H  T  T  P  R  P  L  L  R  *  S  S  R  *  C  S  F  C  L  L  I  L  L  C  Y  A  F  S  S  S  C  *  N  T  T  V  K  S  T  R  C  Y  I  A  T  S  F  C  V  F  V  *  L  F  V  L  M  L  E  *  L  F  Y  S  G  V  S  V  E  P  C  S  I  M  *  M  C  T  I  W  L  F  F  F  S  F  K  F  G  Q  R  I  R  Y  *  R  T  T  V  F  G  I  V  *  D  I  *  K  L  N  L  E  N  L  F  V  Y  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0059I05.3" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3648" stop="3294"/>
                    <exon start="1923" stop="1019"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1257</number_coding_nucleotides>
                  <number_encoded_amino_acids>419</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KISMAKKAVLIGINYPGTKAELRGCINDVKRMYNCLLNRYGFAEEDITVLIDTDDSYTQPTGRNIRKALSDLVGSAESGDCLFVHYSGHGTRLPAETGEEDDTGFDECIVPCDMNLITDDDFRELVDKVPEGCQITIVSDSCHSGGLIDKAKEQIGESHKQGDDDEGHGSGFGFKNFLRRNVEDAFESRGIHLPGRHHRREEEEENFAESSVIETEDGDQVHVKSKSLPLSTLIEILKQKTGKDDIDVGKLRPTLFDVFGEDASPKVKKFMKIIFNKLQKNNEQGGGGGFMGMVGNLAQEFLKQKLDENDESYAKPAMETHVEGKQEVYAGSGNRGLPDSGILVSGCQTDQTSADATPAGGESYGALSNAIQEILAESDGPVTNEELVSKARKKMQKQGFTQRPGLYCDDHHVDAPFVC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="5465" PGL_stop="7550"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5465" e_stop="5598"/>
            <exon e_start="5793" e_stop="5842"/>
            <exon e_start="5933" e_stop="6000"/>
            <exon e_start="6185" e_stop="6247"/>
            <exon e_start="6453" e_stop="6556"/>
            <exon e_start="6866" e_stop="7550"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.993" e_score="0.985"/>
          <exon-intron don_prob="0.987" acc_prob="1.000" e_score="0.980"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="5465" e_stop="5598" e_length="134"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="5599" i_stop="5792" i_length="194"/>
          </intron>
          <exon e_serial="2" e_score="0.980">
            <gDNA_exon_boundary e_start="5793" e_stop="5842" e_length="50"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="1.000">
            <gDNA_intron_boundary i_start="5843" i_stop="5932" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="5933" e_stop="6000" e_length="68"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="6001" i_stop="6184" i_length="184"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="6185" e_stop="6247" e_length="63"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="6248" i_stop="6452" i_length="205"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="6453" e_stop="6556" e_length="104"/>
          </exon>
          <intron i_serial="5" don_prob="0.985" acc_prob="0.999">
            <gDNA_intron_boundary i_start="6557" i_stop="6865" i_length="309"/>
          </intron>
          <exon e_serial="6" e_score="0.987">
            <gDNA_exon_boundary e_start="6866" e_stop="7550" e_length="685"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5465" stop="5598"/>
              <exon start="5793" stop="5842"/>
              <exon start="5933" stop="6000"/>
              <exon start="6185" stop="6247"/>
              <exon start="6453" stop="6556"/>
              <exon start="6866" stop="7550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U574326" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTGAAACAAACATTAAAAACATCAAAATGTCTATGTCCTCTATTTTTAGTAGACCAAGATTGGTTGTTAAGAAAGTTTTGGCTAGAGCTCAAAATGAAGGTGATGGTGCTATTGTTAGAAGAAGCATTGGAAG : GCCTGAATTGCAGAATCTTGATCCATTCCTCATGTTAGATGAGTTTAGTG : TTTCACAACCTGCTGGATTTCCTGACCATCCACACAGAGGTTTTGAGACTGTCACTTATATGTTGCAG : GGAGCTTTTACTCATCAAGATTTTGCTGGTCACAAGGGTACAATCAGGACTGGTGATGTGCAG : TGGATGACAGCAGGAAGAGGTATAGTTCATTCAGAAATGCCTGCTGGACCAGGTACTCAAAAGGGGTTGCAGCTTTGGATAAATTTATCTTCTAAGGACAAAAT : GATTGAGCCAAGGTATCAAGAATTGCTACACCAAGACATACCAAAGGCTGAAAAAGATGGTGTTTCGGTTACTATTTTAGCAGGGGAATCCATGGGGAAAAAATCACAAGTTTTCACGCGAACGCCTACAATGTACCTTGATTTCACCCTAAAACCAGGTTCTGAGCATCATCAACCGATCCCCGAGACCTGGAATGCCTTCCTCTACATAGTTGAAGGAGAGGGAGCGTTTGGTTCTTCGGATTCAACCACTACACCAGCTCACCATTGCTTGGTTTTAGGCCCTGGTGAAGGTCTAAGTGTGTGGAACAAATCTTCAAAGCCATTGAGGTTTGTTCTGATAGGAGGGCAACCGATTAACGAGCCTGTCGTGCAGTATGGTCCATTTGTTATGAACACTAAGAGTGAGATTATGCAGGCTTATCAAGATTATCAACTTGGAAAGAATGGATTTGAAAGATCAAGACAATGGTATTCTAAATGAGTAAACAGAGTTACATCTTATACTTCATGAACATTAAGTGCAATAGTCATTAGTTTTCTTAATGATTTCAAGTTGTGTTAGTCTTTGCTTTCATTTGAAATGTTATGTGTGTTGAGTGATGTTTATTAGTGTTCATTTCCTTCATTTGTTCAAGATTGTATTTATAGTAATTTATGTTAGAGTTCTTGAATTATATCTTAG</gDNA_template>
            <first_frame> V  E  T  N  I  K  N  I  K  M  S  M  S  S  I  F  S  R  P  R  L  V  V  K  K  V  L  A  R  A  Q  N  E  G  D  G  A  I  V  R  R  S  I  G  R :   P  E  L  Q  N  L  D  P  F  L  M  L  D  E  F  S   : V  S  Q  P  A  G  F  P  D  H  P  H  R  G  F  E  T  V  T  Y  M  L  Q  :  G  A  F  T  H  Q  D  F  A  G  H  K  G  T  I  R  T  G  D  V  Q  :  W  M  T  A  G  R  G  I  V  H  S  E  M  P  A  G  P  G  T  Q  K  G  L  Q  L  W  I  N  L  S  S  K  D  K  M :   I  E  P  R  Y  Q  E  L  L  H  Q  D  I  P  K  A  E  K  D  G  V  S  V  T  I  L  A  G  E  S  M  G  K  K  S  Q  V  F  T  R  T  P  T  M  Y  L  D  F  T  L  K  P  G  S  E  H  H  Q  P  I  P  E  T  W  N  A  F  L  Y  I  V  E  G  E  G  A  F  G  S  S  D  S  T  T  T  P  A  H  H  C  L  V  L  G  P  G  E  G  L  S  V  W  N  K  S  S  K  P  L  R  F  V  L  I  G  G  Q  P  I  N  E  P  V  V  Q  Y  G  P  F  V  M  N  T  K  S  E  I  M  Q  A  Y  Q  D  Y  Q  L  G  K  N  G  F  E  R  S  R  Q  W  Y  S  K  *  V  N  R  V  T  S  Y  T  S  *  T  L  S  A  I  V  I  S  F  L  N  D  F  K  L  C  *  S  L  L  S  F  E  M  L  C  V  L  S  D  V  Y  *  C  S  F  P  S  F  V  Q  D  C  I  Y  S  N  L  C  *  S  S  *  I  I  S  * </first_frame>
            <second_frame>  L  K  Q  T  L  K  T  S  K  C  L  C  P  L  F  L  V  D  Q  D  W  L  L  R  K  F  W  L  E  L  K  M  K  V  M  V  L  L  L  E  E  A  L  E   : G  L  N  C  R  I  L  I  H  S  S  C  *  M  S  L  V  :  F  H  N  L  L  D  F  L  T  I  H  T  E  V  L  R  L  S  L  I  C  C  R :   E  L  L  L  I  K  I  L  L  V  T  R  V  Q  S  G  L  V  M  C  S :   G  *  Q  Q  E  E  V  *  F  I  Q  K  C  L  L  D  Q  V  L  K  R  G  C  S  F  G  *  I  Y  L  L  R  T  K   : *  L  S  Q  G  I  K  N  C  Y  T  K  T  Y  Q  R  L  K  K  M  V  F  R  L  L  F  *  Q  G  N  P  W  G  K  N  H  K  F  S  R  E  R  L  Q  C  T  L  I  S  P  *  N  Q  V  L  S  I  I  N  R  S  P  R  P  G  M  P  S  S  T  *  L  K  E  R  E  R  L  V  L  R  I  Q  P  L  H  Q  L  T  I  A  W  F  *  A  L  V  K  V  *  V  C  G  T  N  L  Q  S  H  *  G  L  F  *  *  E  G  N  R  L  T  S  L  S  C  S  M  V  H  L  L  *  T  L  R  V  R  L  C  R  L  I  K  I  I  N  L  E  R  M  D  L  K  D  Q  D  N  G  I  L  N  E  *  T  E  L  H  L  I  L  H  E  H  *  V  Q  *  S  L  V  F  L  M  I  S  S  C  V  S  L  C  F  H  L  K  C  Y  V  C  *  V  M  F  I  S  V  H  F  L  H  L  F  K  I  V  F  I  V  I  Y  V  R  V  L  E  L  Y  L   </second_frame>
            <third_frame>   *  N  K  H  *  K  H  Q  N  V  Y  V  L  Y  F  *  *  T  K  I  G  C  *  E  S  F  G  *  S  S  K  *  R  *  W  C  Y  C  *  K  K  H  W  K  :  A  *  I  A  E  S  *  S  I  P  H  V  R  *  V  *  C :   F  T  T  C  W  I  S  *  P  S  T  Q  R  F  *  D  C  H  L  Y  V  A   : G  S  F  Y  S  S  R  F  C  W  S  Q  G  Y  N  Q  D  W  *  C  A   : V  D  D  S  R  K  R  Y  S  S  F  R  N  A  C  W  T  R  Y  S  K  G  V  A  A  L  D  K  F  I  F  *  G  Q  N  :  D  *  A  K  V  S  R  I  A  T  P  R  H  T  K  G  *  K  R  W  C  F  G  Y  Y  F  S  R  G  I  H  G  E  K  I  T  S  F  H  A  N  A  Y  N  V  P  *  F  H  P  K  T  R  F  *  A  S  S  T  D  P  R  D  L  E  C  L  P  L  H  S  *  R  R  G  S  V  W  F  F  G  F  N  H  Y  T  S  S  P  L  L  G  F  R  P  W  *  R  S  K  C  V  E  Q  I  F  K  A  I  E  V  C  S  D  R  R  A  T  D  *  R  A  C  R  A  V  W  S  I  C  Y  E  H  *  E  *  D  Y  A  G  L  S  R  L  S  T  W  K  E  W  I  *  K  I  K  T  M  V  F  *  M  S  K  Q  S  Y  I  L  Y  F  M  N  I  K  C  N  S  H  *  F  S  *  *  F  Q  V  V  L  V  F  A  F  I  *  N  V  M  C  V  E  *  C  L  L  V  F  I  S  F  I  C  S  R  L  Y  L  *  *  F  M  L  E  F  L  N  Y  I  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0059I05.3" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5465" stop="5598"/>
                    <exon start="5793" stop="5842"/>
                    <exon start="5933" stop="6000"/>
                    <exon start="6185" stop="6247"/>
                    <exon start="6453" stop="6556"/>
                    <exon start="6866" stop="7349"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>900</number_coding_nucleotides>
                  <number_encoded_amino_acids>300</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VETNIKNIKMSMSSIFSRPRLVVKKVLARAQNEGDGAIVRRSIGRPELQNLDPFLMLDEFSVSQPAGFPDHPHRGFETVTYMLQGAFTHQDFAGHKGTIRTGDVQWMTAGRGIVHSEMPAGPGTQKGLQLWINLSSKDKMIEPRYQELLHQDIPKAEKDGVSVTILAGESMGKKSQVFTRTPTMYLDFTLKPGSEHHQPIPETWNAFLYIVEGEGAFGSSDSTTTPAHHCLVLGPGEGLSVWNKSSKPLRFVLIGGQPINEPVVQYGPFVMNTKSEIMQAYQDYQLGKNGFERSRQWYSK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="8715" PGL_stop="12227"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8715" e_stop="9135"/>
            <exon e_start="11735" e_stop="12227"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="8715" e_stop="9135" e_length="421"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.992">
            <gDNA_intron_boundary i_start="9136" i_stop="11734" i_length="2599"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="11735" e_stop="12227" e_length="493"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8715" stop="9135"/>
              <exon start="11735" stop="12227"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U564991" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACCCCTTCCCCCCTCTCTCTCTCTCTAGATCACCAGTTTGCATTCTTTCTCTCTCTAAACCTCAAAAAGTTTCAATTTTTCAGCAAATGGACTCTTCAGATGATGAGGGTGAGGAGTATCTTTTCAAGATTGTAATCATTGGTGATTCTGCAGTAGGTAAATCTAATTTGCTTACACGTTATGCAAGAAATGAGTTTAATTTGCATTCAAAAGCAACTATTGGAGTTGAGTTTCAGACCCAAACTCTTGAAATTGATGGAAAAGAAGTTAAAGCTCAGATTTGGGATACTGCTGGACAAGAAAGGTTTAGAGCTGTGACTTCTGCTTATTATCGTGGTGCTTTTGGTGCTCTTGTTGTTTATGATATTTCAAGAAGGACAACTTTTGATAGTATCCCTCGTTGGCTTGATGAACTCAAAA : CTCATTCGGATACAACGGTTGCAAGGATACTGGTGGGAAACAAATGTGACTTGGAGAATATAAGAGCTGTGAGCGTAGAAGAAGGCAAAAGCCTGGCAGAATCAGAAGGGATGTTCTTCATGGAGACATCTGCCCTCGATTCAACAAACGTGAACAAGGCTTTCGAGATTGTGATTCGAGAGATCTATAATAGTGTTAGCAGAAAGGTTTTGAATTCCGATTCTTATAAAGCCGAATTATCTGTCAACAGAGTCAACCTGGTCAACGATGGTACCGATGGATCGAAACAAAAGCAGGGCTACTCTTGTTGTTCTAGGTGATTAATGTTATGTTTCTTGATTCCCCTTAAGTTTTACAAGAATGGTTCATTAAATTATTTTTGCTGGTCATACTGTTTATTGATTTGTTAATGGATAAAGTACTTTTGTAATGGTCAGGAACTTAATATTTATATTCTATATGGCAGCTGAAATGATAAATGTTTATTTTCCCC</gDNA_template>
            <first_frame> H  P  F  P  P  L  S  L  S  R  S  P  V  C  I  L  S  L  S  K  P  Q  K  V  S  I  F  Q  Q  M  D  S  S  D  D  E  G  E  E  Y  L  F  K  I  V  I  I  G  D  S  A  V  G  K  S  N  L  L  T  R  Y  A  R  N  E  F  N  L  H  S  K  A  T  I  G  V  E  F  Q  T  Q  T  L  E  I  D  G  K  E  V  K  A  Q  I  W  D  T  A  G  Q  E  R  F  R  A  V  T  S  A  Y  Y  R  G  A  F  G  A  L  V  V  Y  D  I  S  R  R  T  T  F  D  S  I  P  R  W  L  D  E  L  K   : T  H  S  D  T  T  V  A  R  I  L  V  G  N  K  C  D  L  E  N  I  R  A  V  S  V  E  E  G  K  S  L  A  E  S  E  G  M  F  F  M  E  T  S  A  L  D  S  T  N  V  N  K  A  F  E  I  V  I  R  E  I  Y  N  S  V  S  R  K  V  L  N  S  D  S  Y  K  A  E  L  S  V  N  R  V  N  L  V  N  D  G  T  D  G  S  K  Q  K  Q  G  Y  S  C  C  S  R  *  L  M  L  C  F  L  I  P  L  K  F  Y  K  N  G  S  L  N  Y  F  C  W  S  Y  C  L  L  I  C  *  W  I  K  Y  F  C  N  G  Q  E  L  N  I  Y  I  L  Y  G  S  *  N  D  K  C  L  F  S   </first_frame>
            <second_frame>  T  P  S  P  L  S  L  S  L  D  H  Q  F  A  F  F  L  S  L  N  L  K  K  F  Q  F  F  S  K  W  T  L  Q  M  M  R  V  R  S  I  F  S  R  L  *  S  L  V  I  L  Q  *  V  N  L  I  C  L  H  V  M  Q  E  M  S  L  I  C  I  Q  K  Q  L  L  E  L  S  F  R  P  K  L  L  K  L  M  E  K  K  L  K  L  R  F  G  I  L  L  D  K  K  G  L  E  L  *  L  L  L  I  I  V  V  L  L  V  L  L  L  F  M  I  F  Q  E  G  Q  L  L  I  V  S  L  V  G  L  M  N  S  K  :  L  I  R  I  Q  R  L  Q  G  Y  W  W  E  T  N  V  T  W  R  I  *  E  L  *  A  *  K  K  A  K  A  W  Q  N  Q  K  G  C  S  S  W  R  H  L  P  S  I  Q  Q  T  *  T  R  L  S  R  L  *  F  E  R  S  I  I  V  L  A  E  R  F  *  I  P  I  L  I  K  P  N  Y  L  S  T  E  S  T  W  S  T  M  V  P  M  D  R  N  K  S  R  A  T  L  V  V  L  G  D  *  C  Y  V  S  *  F  P  L  S  F  T  R  M  V  H  *  I  I  F  A  G  H  T  V  Y  *  F  V  N  G  *  S  T  F  V  M  V  R  N  L  I  F  I  F  Y  M  A  A  E  M  I  N  V  Y  F  P  </second_frame>
            <third_frame>   P  L  P  P  S  L  S  L  *  I  T  S  L  H  S  F  S  L  *  T  S  K  S  F  N  F  S  A  N  G  L  F  R  *  *  G  *  G  V  S  F  Q  D  C  N  H  W  *  F  C  S  R  *  I  *  F  A  Y  T  L  C  K  K  *  V  *  F  A  F  K  S  N  Y  W  S  *  V  S  D  P  N  S  *  N  *  W  K  R  S  *  S  S  D  L  G  Y  C  W  T  R  K  V  *  S  C  D  F  C  L  L  S  W  C  F  W  C  S  C  C  L  *  Y  F  K  K  D  N  F  *  *  Y  P  S  L  A  *  *  T  Q  N :   S  F  G  Y  N  G  C  K  D  T  G  G  K  Q  M  *  L  G  E  Y  K  S  C  E  R  R  R  R  Q  K  P  G  R  I  R  R  D  V  L  H  G  D  I  C  P  R  F  N  K  R  E  Q  G  F  R  D  C  D  S  R  D  L  *  *  C  *  Q  K  G  F  E  F  R  F  L  *  S  R  I  I  C  Q  Q  S  Q  P  G  Q  R  W  Y  R  W  I  E  T  K  A  G  L  L  L  L  F  *  V  I  N  V  M  F  L  D  S  P  *  V  L  Q  E  W  F  I  K  L  F  L  L  V  I  L  F  I  D  L  L  M  D  K  V  L  L  *  W  S  G  T  *  Y  L  Y  S  I  W  Q  L  K  *  *  M  F  I  F  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0059I05.3" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8715" stop="9135"/>
                    <exon start="11735" stop="12054"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>738</number_coding_nucleotides>
                  <number_encoded_amino_acids>246</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HPFPPLSLSRSPVCILSLSKPQKVSIFQQMDSSDDEGEEYLFKIVIIGDSAVGKSNLLTRYARNEFNLHSKATIGVEFQTQTLEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAFGALVVYDISRRTTFDSIPRWLDELKTHSDTTVARILVGNKCDLENIRAVSVEEGKSLAESEGMFFMETSALDSTNVNKAFEIVIREIYNSVSRKVLNSDSYKAELSVNRVNLVNDGTDGSKQKQGYSCCSR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="13488" PGL_stop="13288"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13488" e_stop="13288"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.975"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.975">
            <gDNA_exon_boundary e_start="13488" e_stop="13288" e_length="201"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13488" stop="13288"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U604227" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACGAGAGTACGAGCAACATAGACTATTAGCCTCAAAATGCACCTTTTTTATGTTTCTTTTTTCGTTTCGTAAATATATCCCTGGTAAAGAAATAATGGCTAAGTTTATCTTGATTTATCATTTGAAAATTGTTTAGGTTATTGTTATTTATTCTTATTTTCAATGTGGGATTTAATAGCATATTTCGTCCCTTGGTTGTCG</gDNA_template>
            <first_frame> T  R  V  R  A  T  *  T  I  S  L  K  M  H  L  F  Y  V  S  F  F  V  S  *  I  Y  P  W  *  R  N  N  G  *  V  Y  L  D  L  S  F  E  N  C  L  G  Y  C  Y  L  F  L  F  S  M  W  D  L  I  A  Y  F  V  P  W  L  S </first_frame>
            <second_frame>  R  E  Y  E  Q  H  R  L  L  A  S  K  C  T  F  F  M  F  L  F  S  F  R  K  Y  I  P  G  K  E  I  M  A  K  F  I  L  I  Y  H  L  K  I  V  *  V  I  V  I  Y  S  Y  F  Q  C  G  I  *  *  H  I  S  S  L  G  C   </second_frame>
            <third_frame>   E  S  T  S  N  I  D  Y  *  P  Q  N  A  P  F  L  C  F  F  F  R  F  V  N  I  S  L  V  K  K  *  W  L  S  L  S  *  F  I  I  *  K  L  F  R  L  L  L  F  I  L  I  F  N  V  G  F  N  S  I  F  R  P  L  V  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0059I05.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="16405" PGL_stop="13803"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16405" e_stop="16153"/>
            <exon e_start="15748" e_stop="15699"/>
            <exon e_start="15464" e_stop="15397"/>
            <exon e_start="15000" e_stop="14938"/>
            <exon e_start="14745" e_stop="14642"/>
            <exon e_start="14107" e_stop="13803"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.996"/>
          <exon-intron don_prob="0.843" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.947" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.982" e_score="0.990"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="16405" e_stop="16153" e_length="253"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="16152" i_stop="15749" i_length="404"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15748" e_stop="15699" e_length="50"/>
          </exon>
          <intron i_serial="2" don_prob="0.843" acc_prob="0.989">
            <gDNA_intron_boundary i_start="15698" i_stop="15465" i_length="234"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="15464" e_stop="15397" e_length="68"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="0.947">
            <gDNA_intron_boundary i_start="15396" i_stop="15001" i_length="396"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="15000" e_stop="14938" e_length="63"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="14937" i_stop="14746" i_length="192"/>
          </intron>
          <exon e_serial="5" e_score="0.990">
            <gDNA_exon_boundary e_start="14745" e_stop="14642" e_length="104"/>
          </exon>
          <intron i_serial="5" don_prob="0.969" acc_prob="0.982">
            <gDNA_intron_boundary i_start="14641" i_stop="14108" i_length="534"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="14107" e_stop="13803" e_length="305"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16405" stop="16153"/>
              <exon start="15748" stop="15699"/>
              <exon start="15464" stop="15397"/>
              <exon start="15000" stop="14938"/>
              <exon start="14745" stop="14642"/>
              <exon start="14107" stop="13803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U585937" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACACAAATATTTCATAATCAAGAATTGGTTATATGAGAGCTATTTCTGAACTATTTTTAGTGAAAATCTTCCCATTTGTTAGAAATAAAAAAGTTTCAAGAAAGCCTATTTTTTTTCCTATTAGAAATATTAATATGTCTGAATCAAATCAATATGATTCTTGTTTTGATAGACCAAGATTGGTTATTAAGAAAGTTTTGGCTAAACCTCAAAGTGAAGGGAATGGAGCTGTTGTTAGAAGAAGCATTGGAAG : GCATGAATTGAGGAATCTTGATCCTTTCCTAATGTTGGATGAATTTTCAG : TTTCTGCTCCTGCTGGTTTTCCTGATCATCCACACAGAGGTTTTGAGACAGTAACTTACATGCTACAG : GGAGCTTTTACTCATCAAGATTTTGCTGGTCACAAGGGCACAATTAATACTGGTGATGTGCAG : TGGATGACAGCAGGAAGAGGTATAATTCATTCAGAAATGCCTGCAGGAGAAGGCAGTCAAAAGGGGTTGCAACTTTGGATAAATCTCTCTTCTAAGGACAAAAT : GATTGAGCCAAGGTATCAAGAACTGCTGAAAGAAGACATACCAAGAGCAGAGAATGATGGTGTTAAAGTAAAAGTTATAGCAGGTGAAGCAATGGGAGTCCAATCCCCGGTTTACACACAAACGCCTACAATGTACCTCGATTTCACCCTACAACCAACAGCTTACTATCATCAAGCCATCCCTGAATCTTGGAACGCCTTCGTATATATAGTTGAAGGAGAAGGTGTCTTCGGAATTCCGAGTTCAGGTCCTGTATCAGCTCACCATTGCTTGGTTTTAGGCCCTGGAGAGGGACTTAGTGTAT</gDNA_template>
            <first_frame> T  Q  I  F  H  N  Q  E  L  V  I  *  E  L  F  L  N  Y  F  *  *  K  S  S  H  L  L  E  I  K  K  F  Q  E  S  L  F  F  F  L  L  E  I  L  I  C  L  N  Q  I  N  M  I  L  V  L  I  D  Q  D  W  L  L  R  K  F  W  L  N  L  K  V  K  G  M  E  L  L  L  E  E  A  L  E   : G  M  N  *  G  I  L  I  L  S  *  C  W  M  N  F  Q  :  F  L  L  L  L  V  F  L  I  I  H  T  E  V  L  R  Q  *  L  T  C  Y  R :   E  L  L  L  I  K  I  L  L  V  T  R  A  Q  L  I  L  V  M  C  S :   G  *  Q  Q  E  E  V  *  F  I  Q  K  C  L  Q  E  K  A  V  K  R  G  C  N  F  G  *  I  S  L  L  R  T  K   : *  L  S  Q  G  I  K  N  C  *  K  K  T  Y  Q  E  Q  R  M  M  V  L  K  *  K  L  *  Q  V  K  Q  W  E  S  N  P  R  F  T  H  K  R  L  Q  C  T  S  I  S  P  Y  N  Q  Q  L  T  I  I  K  P  S  L  N  L  G  T  P  S  Y  I  *  L  K  E  K  V  S  S  E  F  R  V  Q  V  L  Y  Q  L  T  I  A  W  F  *  A  L  E  R  D  L  V  Y </first_frame>
            <second_frame>  H  K  Y  F  I  I  K  N  W  L  Y  E  S  Y  F  *  T  I  F  S  E  N  L  P  I  C  *  K  *  K  S  F  K  K  A  Y  F  F  S  Y  *  K  Y  *  Y  V  *  I  K  S  I  *  F  L  F  *  *  T  K  I  G  Y  *  E  S  F  G  *  T  S  K  *  R  E  W  S  C  C  *  K  K  H  W  K  :  A  *  I  E  E  S  *  S  F  P  N  V  G  *  I  F  S :   F  C  S  C  W  F  S  *  S  S  T  Q  R  F  *  D  S  N  L  H  A  T   : G  S  F  Y  S  S  R  F  C  W  S  Q  G  H  N  *  Y  W  *  C  A   : V  D  D  S  R  K  R  Y  N  S  F  R  N  A  C  R  R  R  Q  S  K  G  V  A  T  L  D  K  S  L  F  *  G  Q  N  :  D  *  A  K  V  S  R  T  A  E  R  R  H  T  K  S  R  E  *  W  C  *  S  K  S  Y  S  R  *  S  N  G  S  P  I  P  G  L  H  T  N  A  Y  N  V  P  R  F  H  P  T  T  N  S  L  L  S  S  S  H  P  *  I  L  E  R  L  R  I  Y  S  *  R  R  R  C  L  R  N  S  E  F  R  S  C  I  S  S  P  L  L  G  F  R  P  W  R  G  T  *  C   </second_frame>
            <third_frame>   T  N  I  S  *  S  R  I  G  Y  M  R  A  I  S  E  L  F  L  V  K  I  F  P  F  V  R  N  K  K  V  S  R  K  P  I  F  F  P  I  R  N  I  N  M  S  E  S  N  Q  Y  D  S  C  F  D  R  P  R  L  V  I  K  K  V  L  A  K  P  Q  S  E  G  N  G  A  V  V  R  R  S  I  G  R :   H  E  L  R  N  L  D  P  F  L  M  L  D  E  F  S   : V  S  A  P  A  G  F  P  D  H  P  H  R  G  F  E  T  V  T  Y  M  L  Q  :  G  A  F  T  H  Q  D  F  A  G  H  K  G  T  I  N  T  G  D  V  Q  :  W  M  T  A  G  R  G  I  I  H  S  E  M  P  A  G  E  G  S  Q  K  G  L  Q  L  W  I  N  L  S  S  K  D  K  M :   I  E  P  R  Y  Q  E  L  L  K  E  D  I  P  R  A  E  N  D  G  V  K  V  K  V  I  A  G  E  A  M  G  V  Q  S  P  V  Y  T  Q  T  P  T  M  Y  L  D  F  T  L  Q  P  T  A  Y  Y  H  Q  A  I  P  E  S  W  N  A  F  V  Y  I  V  E  G  E  G  V  F  G  I  P  S  S  G  P  V  S  A  H  H  C  L  V  L  G  P  G  E  G  L  S  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0059I05.3" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16388" stop="16153"/>
                    <exon start="15748" stop="15699"/>
                    <exon start="15464" stop="15397"/>
                    <exon start="15000" stop="14938"/>
                    <exon start="14745" stop="14642"/>
                    <exon start="14107" stop="13804"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>825</number_coding_nucleotides>
                  <number_encoded_amino_acids>275</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SRIGYMRAISELFLVKIFPFVRNKKVSRKPIFFPIRNINMSESNQYDSCFDRPRLVIKKVLAKPQSEGNGAVVRRSIGRHELRNLDPFLMLDEFSVSAPAGFPDHPHRGFETVTYMLQGAFTHQDFAGHKGTINTGDVQWMTAGRGIIHSEMPAGEGSQKGLQLWINLSSKDKMIEPRYQELLKEDIPRAENDGVKVKVIAGEAMGVQSPVYTQTPTMYLDFTLQPTAYYHQAIPESWNAFVYIVEGEGVFGIPSSGPVSAHHCLVLGPGEGLSV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="15844" e_stop="15699"/>
            <exon e_start="15464" e_stop="15397"/>
            <exon e_start="15000" e_stop="14938"/>
            <exon e_start="14745" e_stop="14370"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.843" acc_prob="0.989" e_score="0.993"/>
          <exon-intron don_prob="0.991" acc_prob="0.947" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="15844" e_stop="15699" e_length="146"/>
          </exon>
          <intron i_serial="1" don_prob="0.843" acc_prob="0.989">
            <gDNA_intron_boundary i_start="15698" i_stop="15465" i_length="234"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15464" e_stop="15397" e_length="68"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.947">
            <gDNA_intron_boundary i_start="15396" i_stop="15001" i_length="396"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="15000" e_stop="14938" e_length="63"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="14937" i_stop="14746" i_length="192"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="14745" e_stop="14370" e_length="376"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15844" stop="15699"/>
              <exon start="15464" stop="15397"/>
              <exon start="15000" stop="14938"/>
              <exon start="14745" stop="14370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U595583" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCAAAAAGAAAAAAAAAGTATGTGTTTGTGATTTTTTCTTTAATCTTGTTGCTTATTGAATGTGGGGATTTTGTTTTAAAAATTTGATCCTGCAGGCATGAATTGAGGAATCTTGATCCTTTCCTAATGTTGGATGAATTTTCAG : TTTCTGCTCCTGCTGGTTTTCCTGATCATCCACACAGAGGTTTTGAGACAGTAACTTACATGCTACAG : GGAGCTTTTACTCATCAAGATTTTGCTGGTCACAAGGGCACAATTAATACTGGTGATGTGCAG : TGGATGACAGCAGGAAGAGGTATAATTCATTCAGAAATGCCTGCAGGAGAAGGCAGTCAAAAGGGGTTGCAACTTTGGATAAATCTCTCTTCTAAGGACAAAATGTAAGTTAGTCATTTAATCATTAGAAGCTTTCGGTCTTATCACTCCTTTTGACCTATGTTGCTCGTACTCTTTGAAAATGCTGGCACACCCGTTTCAGATCCTCCATAAATGCACTATTATTTGGAGATTCTGACACGTGTCTATTGGCATTTTTAAAGAGTACCAGCAACACAACTTTTGACTGACCCCATATAGATACTTTACACACCACTACTTTATTGTACTTGGCTCTAGCATATAGTAGTAAAAAAATAATGTTAGCTCTTATCCT</gDNA_template>
            <first_frame> I  K  K  K  K  K  V  C  V  C  D  F  F  F  N  L  V  A  Y  *  M  W  G  F  C  F  K  N  L  I  L  Q  A  *  I  E  E  S  *  S  F  P  N  V  G  *  I  F  S :   F  C  S  C  W  F  S  *  S  S  T  Q  R  F  *  D  S  N  L  H  A  T   : G  S  F  Y  S  S  R  F  C  W  S  Q  G  H  N  *  Y  W  *  C  A   : V  D  D  S  R  K  R  Y  N  S  F  R  N  A  C  R  R  R  Q  S  K  G  V  A  T  L  D  K  S  L  F  *  G  Q  N  V  S  *  S  F  N  H  *  K  L  S  V  L  S  L  L  L  T  Y  V  A  R  T  L  *  K  C  W  H  T  R  F  R  S  S  I  N  A  L  L  F  G  D  S  D  T  C  L  L  A  F  L  K  S  T  S  N  T  T  F  D  *  P  H  I  D  T  L  H  T  T  T  L  L  Y  L  A  L  A  Y  S  S  K  K  I  M  L  A  L  I   </first_frame>
            <second_frame>  S  K  R  K  K  K  Y  V  F  V  I  F  S  L  I  L  L  L  I  E  C  G  D  F  V  L  K  I  *  S  C  R  H  E  L  R  N  L  D  P  F  L  M  L  D  E  F  S   : V  S  A  P  A  G  F  P  D  H  P  H  R  G  F  E  T  V  T  Y  M  L  Q  :  G  A  F  T  H  Q  D  F  A  G  H  K  G  T  I  N  T  G  D  V  Q  :  W  M  T  A  G  R  G  I  I  H  S  E  M  P  A  G  E  G  S  Q  K  G  L  Q  L  W  I  N  L  S  S  K  D  K  M  *  V  S  H  L  I  I  R  S  F  R  S  Y  H  S  F  *  P  M  L  L  V  L  F  E  N  A  G  T  P  V  S  D  P  P  *  M  H  Y  Y  L  E  I  L  T  R  V  Y  W  H  F  *  R  V  P  A  T  Q  L  L  T  D  P  I  *  I  L  Y  T  P  L  L  Y  C  T  W  L  *  H  I  V  V  K  K  *  C  *  L  L  S  </second_frame>
            <third_frame>   Q  K  E  K  K  S  M  C  L  *  F  F  L  *  S  C  C  L  L  N  V  G  I  L  F  *  K  F  D  P  A  G  M  N  *  G  I  L  I  L  S  *  C  W  M  N  F  Q  :  F  L  L  L  L  V  F  L  I  I  H  T  E  V  L  R  Q  *  L  T  C  Y  R :   E  L  L  L  I  K  I  L  L  V  T  R  A  Q  L  I  L  V  M  C  S :   G  *  Q  Q  E  E  V  *  F  I  Q  K  C  L  Q  E  K  A  V  K  R  G  C  N  F  G  *  I  S  L  L  R  T  K  C  K  L  V  I  *  S  L  E  A  F  G  L  I  T  P  F  D  L  C  C  S  Y  S  L  K  M  L  A  H  P  F  Q  I  L  H  K  C  T  I  I  W  R  F  *  H  V  S  I  G  I  F  K  E  Y  Q  Q  H  N  F  *  L  T  P  Y  R  Y  F  T  H  H  Y  F  I  V  L  G  S  S  I  *  *  *  K  N  N  V  S  S  Y  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0059I05.3" strand="-"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15756" stop="15699"/>
                    <exon start="15464" stop="15397"/>
                    <exon start="15000" stop="14938"/>
                    <exon start="14745" stop="14638"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>294</number_coding_nucleotides>
                  <number_encoded_amino_acids>98</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SCRHELRNLDPFLMLDEFSVSAPAGFPDHPHRGFETVTYMLQGAFTHQDFAGHKGTINTGDVQWMTAGRGIIHSEMPAGEGSQKGLQLWINLSSKDKM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="23792" PGL_stop="28906"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23792" e_stop="24008"/>
            <exon e_start="25018" e_stop="25176"/>
            <exon e_start="26258" e_stop="26369"/>
            <exon e_start="26475" e_stop="26594"/>
            <exon e_start="27256" e_stop="27437"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.975" e_score="0.995"/>
          <exon-intron don_prob="0.982" acc_prob="0.908" e_score="0.994"/>
          <exon-intron don_prob="0.693" acc_prob="0.704" e_score="0.991"/>
          <exon-intron don_prob="0.991" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.956"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="23792" e_stop="24008" e_length="217"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.975">
            <gDNA_intron_boundary i_start="24009" i_stop="25017" i_length="1009"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="25018" e_stop="25176" e_length="159"/>
          </exon>
          <intron i_serial="2" don_prob="0.982" acc_prob="0.908">
            <gDNA_intron_boundary i_start="25177" i_stop="26257" i_length="1081"/>
          </intron>
          <exon e_serial="3" e_score="0.991">
            <gDNA_exon_boundary e_start="26258" e_stop="26369" e_length="112"/>
          </exon>
          <intron i_serial="3" don_prob="0.693" acc_prob="0.704">
            <gDNA_intron_boundary i_start="26370" i_stop="26474" i_length="105"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="26475" e_stop="26594" e_length="120"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.997">
            <gDNA_intron_boundary i_start="26595" i_stop="27255" i_length="661"/>
          </intron>
          <exon e_serial="5" e_score="0.956">
            <gDNA_exon_boundary e_start="27256" e_stop="27437" e_length="182"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23792" stop="24008"/>
              <exon start="25018" stop="25176"/>
              <exon start="26258" stop="26369"/>
              <exon start="26475" stop="26594"/>
              <exon start="27256" stop="27437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U566331" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAGACAGGAAAAAAAATTTAATGCAGAAATAGGCGAAGAAAATTGGGGAAAATATTGAGGAAGATAAAGGGGGAATCGACATTGAATAACTAATTATGGCATTTTCATGGCGTTTTATTGGACTATCTATTCTTGTTTTTCTTCTAAATGTATCATCAATAGCACATTCTGCTCCTACCAATGCAGATAAGTCTTGCAGCAATGAAATCAATATG : ATGCTGGTGAAGTTGTGGGTTAATGGTGGTGAGGAAGATTCAATAGTTGGCTTGAGTGCAGCATTTGGGTCTGTATTACCCACTGATACTAAACGTGCCTCCAGGTTGCCTGCTGTTTATACACAACCTTTGAATGGCTGTTCTGCTTCCTCCACTAAG : TTATCAGGCTCTATTGCACTAGCTCGTCGCGGTGAATGTGAATTTATAACCAAGGCCACGGTCGCCCAAGCAGGAGGTGCAGGAGGTGTTGTGCTAATAAATAATGAAGGAG : GTACTCTGGATATTGCTTGTCCTAATAATTCTACCATATCAAATGTAACCATTCCTGTTGTTTCAATTTCAAAAGAGGGGGCAGATATTATTGATAAATACATCAATTCAGGAAAGAAAG : TGGAGCTGCTGTTATATTCGCCAGATCGCCCTATTGTGGACTACTCGGTGTCTTTCATATGGTTGATGGCTGTTGGAACAATCATTTGTGCAGCTCTTTGGAAAAAGTTTACTCAATCTAAGGAAAGTGACGACTATGAACTATCACAAGAGCCCCCTTCCTAATCTCAAATTTGACATGCT</gDNA_template>
            <first_frame> K  R  Q  E  K  K  F  N  A  E  I  G  E  E  N  W  G  K  Y  *  G  R  *  R  G  N  R  H  *  I  T  N  Y  G  I  F  M  A  F  Y  W  T  I  Y  S  C  F  S  S  K  C  I  I  N  S  T  F  C  S  Y  Q  C  R  *  V  L  Q  Q  *  N  Q  Y   : D  A  G  E  V  V  G  *  W  W  *  G  R  F  N  S  W  L  E  C  S  I  W  V  C  I  T  H  *  Y  *  T  C  L  Q  V  A  C  C  L  Y  T  T  F  E  W  L  F  C  F  L  H  *   : V  I  R  L  Y  C  T  S  S  S  R  *  M  *  I  Y  N  Q  G  H  G  R  P  S  R  R  C  R  R  C  C  A  N  K  *  *  R  R :   Y  S  G  Y  C  L  S  *  *  F  Y  H  I  K  C  N  H  S  C  C  F  N  F  K  R  G  G  R  Y  Y  *  *  I  H  Q  F  R  K  E  S :   G  A  A  V  I  F  A  R  S  P  Y  C  G  L  L  G  V  F  H  M  V  D  G  C  W  N  N  H  L  C  S  S  L  E  K  V  Y  S  I  *  G  K  *  R  L  *  T  I  T  R  A  P  F  L  I  S  N  L  T  C  </first_frame>
            <second_frame>  K  D  R  K  K  N  L  M  Q  K  *  A  K  K  I  G  E  N  I  E  E  D  K  G  G  I  D  I  E  *  L  I  M  A  F  S  W  R  F  I  G  L  S  I  L  V  F  L  L  N  V  S  S  I  A  H  S  A  P  T  N  A  D  K  S  C  S  N  E  I  N  M  :  M  L  V  K  L  W  V  N  G  G  E  E  D  S  I  V  G  L  S  A  A  F  G  S  V  L  P  T  D  T  K  R  A  S  R  L  P  A  V  Y  T  Q  P  L  N  G  C  S  A  S  S  T  K  :  L  S  G  S  I  A  L  A  R  R  G  E  C  E  F  I  T  K  A  T  V  A  Q  A  G  G  A  G  G  V  V  L  I  N  N  E  G   : G  T  L  D  I  A  C  P  N  N  S  T  I  S  N  V  T  I  P  V  V  S  I  S  K  E  G  A  D  I  I  D  K  Y  I  N  S  G  K  K   : V  E  L  L  L  Y  S  P  D  R  P  I  V  D  Y  S  V  S  F  I  W  L  M  A  V  G  T  I  I  C  A  A  L  W  K  K  F  T  Q  S  K  E  S  D  D  Y  E  L  S  Q  E  P  P  S  *  S  Q  I  *  H  A </second_frame>
            <third_frame>   K  T  G  K  K  I  *  C  R  N  R  R  R  K  L  G  K  I  L  R  K  I  K  G  E  S  T  L  N  N  *  L  W  H  F  H  G  V  L  L  D  Y  L  F  L  F  F  F  *  M  Y  H  Q  *  H  I  L  L  L  P  M  Q  I  S  L  A  A  M  K  S  I  * :   C  W  *  S  C  G  L  M  V  V  R  K  I  Q  *  L  A  *  V  Q  H  L  G  L  Y  Y  P  L  I  L  N  V  P  P  G  C  L  L  F  I  H  N  L  *  M  A  V  L  L  P  P  L  S :   Y  Q  A  L  L  H  *  L  V  A  V  N  V  N  L  *  P  R  P  R  S  P  K  Q  E  V  Q  E  V  L  C  *  *  I  M  K  E  :  V  L  W  I  L  L  V  L  I  I  L  P  Y  Q  M  *  P  F  L  L  F  Q  F  Q  K  R  G  Q  I  L  L  I  N  T  S  I  Q  E  R  K  :  W  S  C  C  Y  I  R  Q  I  A  L  L  W  T  T  R  C  L  S  Y  G  *  W  L  L  E  Q  S  F  V  Q  L  F  G  K  S  L  L  N  L  R  K  V  T  T  M  N  Y  H  K  S  P  L  P  N  L  K  F  D  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0059I05.3" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23883" stop="24008"/>
                    <exon start="25018" stop="25176"/>
                    <exon start="26258" stop="26369"/>
                    <exon start="26475" stop="26594"/>
                    <exon start="27256" stop="27419"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>678</number_coding_nucleotides>
                  <number_encoded_amino_acids>226</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIMAFSWRFIGLSILVFLLNVSSIAHSAPTNADKSCSNEINMMLVKLWVNGGEEDSIVGLSAAFGSVLPTDTKRASRLPAVYTQPLNGCSASSTKLSGSIALARRGECEFITKATVAQAGGAGGVVLINNEGGTLDIACPNNSTISNVTIPVVSISKEGADIIDKYINSGKKVELLLYSPDRPIVDYSVSFIWLMAVGTIICAALWKKFTQSKESDDYELSQEPPS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="27349" e_stop="27377"/>
            <exon e_start="28733" e_stop="28906"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.999" e_score="0.966"/>
          <exon-only e_score="0.971"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.966">
            <gDNA_exon_boundary e_start="27349" e_stop="27377" e_length="29"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="27378" i_stop="28732" i_length="1355"/>
          </intron>
          <exon e_serial="2" e_score="0.971">
            <gDNA_exon_boundary e_start="28733" e_stop="28906" e_length="174"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27349" stop="27377"/>
              <exon start="28733" stop="28906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U594243" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCTTTGGAAAAAGTTTACTCAATCTAAG : GATGATGATATGACCGTCAAGGAGGAGGATGACAGTGAAATTCTGCACATTACTGCATGGACTGCTATTGGATTTGTCATCTCAGCATCCACATTTCTGGTGCTGCTTTACTTTTTCATGTCTACGTGGTTTGTCTGGCTGCTGATATTGCTTTTCTGTCTCGGTGGAATCGAG</gDNA_template>
            <first_frame> L  F  G  K  S  L  L  N  L  R :   M  M  I  *  P  S  R  R  R  M  T  V  K  F  C  T  L  L  H  G  L  L  L  D  L  S  S  Q  H  P  H  F  W  C  C  F  T  F  S  C  L  R  G  L  S  G  C  *  Y  C  F  S  V  S  V  E  S   </first_frame>
            <second_frame>  S  L  E  K  V  Y  S  I  *   : G  *  *  Y  D  R  Q  G  G  G  *  Q  *  N  S  A  H  Y  C  M  D  C  Y  W  I  C  H  L  S  I  H  I  S  G  A  A  L  L  F  H  V  Y  V  V  C  L  A  A  D  I  A  F  L  S  R  W  N  R  </second_frame>
            <third_frame>   L  W  K  K  F  T  Q  S  K  :  D  D  D  M  T  V  K  E  E  D  D  S  E  I  L  H  I  T  A  W  T  A  I  G  F  V  I  S  A  S  T  F  L  V  L  L  Y  F  F  M  S  T  W  F  V  W  L  L  I  L  L  F  C  L  G  G  I  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0059I05.3" strand="+"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27351" stop="27377"/>
                    <exon start="28733" stop="28906"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LWKKFTQSKDDDMTVKEEDDSEILHITAWTAIGFVISASTFLVLLYFFMSTWFVWLLILLFCLGGIE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="39264" PGL_stop="40649"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39264" e_stop="39291"/>
            <exon e_start="39966" e_stop="40649"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.823" e_score="1.000"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="39264" e_stop="39291" e_length="28"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.823">
            <gDNA_intron_boundary i_start="39292" i_stop="39965" i_length="674"/>
          </intron>
          <exon e_serial="2" e_score="0.987">
            <gDNA_exon_boundary e_start="39966" e_stop="40649" e_length="684"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39264" stop="39291"/>
              <exon start="39966" stop="40649"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U604026" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATTCGTCTCACTGCTCTGCACCGTCTT : ATGCATAAATGTGTGATGGTCTTCTCGCTAATTGAGTCTCGAAAATGGTTCACAGTCAATGGAAGGCAAAGATTGTGCCATCCATTGCCATATCTGAGAGTAGGGCATATGTGCATACAAATTATGTTCAAAACCAGTGGAGGGAGACCTAAGAAGAAAATGTACTATAGAGTAAATGATCTAGACAGAGTCATGGAGCTTCAGAAAAAACCATCATTGATTTTACGCTTAAAATCCATAATTCAATCACAGAGAAAACAATGTGTCCTTCTTAGAGACCTTGAGAAAGAAGTTGGATTTGTGCAAAAGTGGAATTTCATGGGTATTATTGAAAAATATCCTATGATATTCCGTGTCACCGGTGGTAATGGAACTCCACCGATGGTTATGCTGACTGAAAAGGCTGATAAAATAGCACTAGAAGAAGATAAAGCAAGAGTGCAAATGGAACCTATTTTGGTCAAGAATCTAAGGAAGTTGTTAATGTTGTCGGTTGATTGCACGTTGCCACTGGAAACCATTCAACTGATTGAGAATGATTTGGGCTTGCCTAATGACTTCGGGCAATCGCTGATTCCAAAATACCCACAATTTTTCTCAGTGAAAGACGTGAATGGAAGAACATCCCTTCAGTTAGAAAATTGGGATTCTTATCTAGCTGTCACTGCCCGGGAGGAAAGGTTG</gDNA_template>
            <first_frame> H  S  S  H  C  S  A  P  S   : Y  A  *  M  C  D  G  L  L  A  N  *  V  S  K  M  V  H  S  Q  W  K  A  K  I  V  P  S  I  A  I  S  E  S  R  A  Y  V  H  T  N  Y  V  Q  N  Q  W  R  E  T  *  E  E  N  V  L  *  S  K  *  S  R  Q  S  H  G  A  S  E  K  T  I  I  D  F  T  L  K  I  H  N  S  I  T  E  K  T  M  C  P  S  *  R  P  *  E  R  S  W  I  C  A  K  V  E  F  H  G  Y  Y  *  K  I  S  Y  D  I  P  C  H  R  W  *  W  N  S  T  D  G  Y  A  D  *  K  G  *  *  N  S  T  R  R  R  *  S  K  S  A  N  G  T  Y  F  G  Q  E  S  K  E  V  V  N  V  V  G  *  L  H  V  A  T  G  N  H  S  T  D  *  E  *  F  G  L  A  *  *  L  R  A  I  A  D  S  K  I  P  T  I  F  L  S  E  R  R  E  W  K  N  I  P  S  V  R  K  L  G  F  L  S  S  C  H  C  P  G  G  K  V  </first_frame>
            <second_frame>  I  R  L  T  A  L  H  R  L  :  M  H  K  C  V  M  V  F  S  L  I  E  S  R  K  W  F  T  V  N  G  R  Q  R  L  C  H  P  L  P  Y  L  R  V  G  H  M  C  I  Q  I  M  F  K  T  S  G  G  R  P  K  K  K  M  Y  Y  R  V  N  D  L  D  R  V  M  E  L  Q  K  K  P  S  L  I  L  R  L  K  S  I  I  Q  S  Q  R  K  Q  C  V  L  L  R  D  L  E  K  E  V  G  F  V  Q  K  W  N  F  M  G  I  I  E  K  Y  P  M  I  F  R  V  T  G  G  N  G  T  P  P  M  V  M  L  T  E  K  A  D  K  I  A  L  E  E  D  K  A  R  V  Q  M  E  P  I  L  V  K  N  L  R  K  L  L  M  L  S  V  D  C  T  L  P  L  E  T  I  Q  L  I  E  N  D  L  G  L  P  N  D  F  G  Q  S  L  I  P  K  Y  P  Q  F  F  S  V  K  D  V  N  G  R  T  S  L  Q  L  E  N  W  D  S  Y  L  A  V  T  A  R  E  E  R  L </second_frame>
            <third_frame>   F  V  S  L  L  C  T  V  L :   C  I  N  V  *  W  S  S  R  *  L  S  L  E  N  G  S  Q  S  M  E  G  K  D  C  A  I  H  C  H  I  *  E  *  G  I  C  A  Y  K  L  C  S  K  P  V  E  G  D  L  R  R  K  C  T  I  E  *  M  I  *  T  E  S  W  S  F  R  K  N  H  H  *  F  Y  A  *  N  P  *  F  N  H  R  E  N  N  V  S  F  L  E  T  L  R  K  K  L  D  L  C  K  S  G  I  S  W  V  L  L  K  N  I  L  *  Y  S  V  S  P  V  V  M  E  L  H  R  W  L  C  *  L  K  R  L  I  K  *  H  *  K  K  I  K  Q  E  C  K  W  N  L  F  W  S  R  I  *  G  S  C  *  C  C  R  L  I  A  R  C  H  W  K  P  F  N  *  L  R  M  I  W  A  C  L  M  T  S  G  N  R  *  F  Q  N  T  H  N  F  S  Q  *  K  T  *  M  E  E  H  P  F  S  *  K  I  G  I  L  I  *  L  S  L  P  G  R  K  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0059I05.3" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39265" stop="39291"/>
                    <exon start="39966" stop="40649"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>711</number_coding_nucleotides>
                  <number_encoded_amino_acids>237</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IRLTALHRLMHKCVMVFSLIESRKWFTVNGRQRLCHPLPYLRVGHMCIQIMFKTSGGRPKKKMYYRVNDLDRVMELQKKPSLILRLKSIIQSQRKQCVLLRDLEKEVGFVQKWNFMGIIEKYPMIFRVTGGNGTPPMVMLTEKADKIALEEDKARVQMEPILVKNLRKLLMLSVDCTLPLETIQLIENDLGLPNDFGQSLIPKYPQFFSVKDVNGRTSLQLENWDSYLAVTAREERL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="42488" PGL_stop="43719"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42488" e_stop="42559"/>
            <exon e_start="42862" e_stop="43051"/>
            <exon e_start="43162" e_stop="43719"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.872" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="42488" e_stop="42559" e_length="72"/>
          </exon>
          <intron i_serial="1" don_prob="0.872" acc_prob="0.999">
            <gDNA_intron_boundary i_start="42560" i_stop="42861" i_length="302"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42862" e_stop="43051" e_length="190"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="43052" i_stop="43161" i_length="110"/>
          </intron>
          <exon e_serial="3" e_score="0.998">
            <gDNA_exon_boundary e_start="43162" e_stop="43719" e_length="558"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42488" stop="42559"/>
              <exon start="42862" stop="43051"/>
              <exon start="43162" stop="43719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U566508" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAGCTAGACACCCGGAGCTTCAACAATATATCCATTCTTCTGTCAATGGACTTCTTCCTTTCATACAAAAG : GGATTAGTTGAGAGAGTGGCGGTGATTTTTTCTGGTAGCAACAATGTACCTATCGAGAGATTTGTTTTCAAGATAAATGTAAACCAATCCTATGGTTCAAAGTTGGAGGAAGCTGATCTGGCGTTCTCTCTTAAATCATTTTTGATCAAGCTTCCATTGTCCCAATCGTTAATGAAGGTTCTTCCACCAG : ATTGCAGGTGGGAGATAACAGCTTACTTCCGCTCTCTCCCGCAGAGTGGTACCAGCAAAGATGCCGAAATTTGGGTCCCAACAGATACACAGCAGTGGCAGCAAGCACCTCTTATAACTCCTATTAAGTCCATGAGTAGTGAACCTCTAGGTGTCCAGCTATATCTTGAACATCCAAGTCTCTCTGAACCAAAGGCTTAGAAGGAGGTCATCTCAGAGGCATTTGTCATGGATCTCTTCCAACAGAATTAGTAAAGGCGTGCCAATATCTTATCCTGGTGTGGTTCCTGACATCTTCCCACTTCTCATACCGTTCTCTTTTCAACCATCAACTATTCGAAACTCACTTGCCTGACTAATCTGGATACAGCCAAGTTTTCATATCCTGCAGTGGATATAGTATATCAAGGTAGATTTGGGCATATCTGGGGGCATCAATTATGCACAGAGACTCAAATAAAACATAGTTAGGTCACCAGATTATCTTGTAAAGCTTCATTTCCTTACAATTACATAGAGTAGTATTTAAGCTGGTTGGCCATCATTCTATTCAAAAAGT</gDNA_template>
            <first_frame> R  A  R  H  P  E  L  Q  Q  Y  I  H  S  S  V  N  G  L  L  P  F  I  Q  K  :  G  L  V  E  R  V  A  V  I  F  S  G  S  N  N  V  P  I  E  R  F  V  F  K  I  N  V  N  Q  S  Y  G  S  K  L  E  E  A  D  L  A  F  S  L  K  S  F  L  I  K  L  P  L  S  Q  S  L  M  K  V  L  P  P   : D  C  R  W  E  I  T  A  Y  F  R  S  L  P  Q  S  G  T  S  K  D  A  E  I  W  V  P  T  D  T  Q  Q  W  Q  Q  A  P  L  I  T  P  I  K  S  M  S  S  E  P  L  G  V  Q  L  Y  L  E  H  P  S  L  S  E  P  K  A  *  K  E  V  I  S  E  A  F  V  M  D  L  F  Q  Q  N  *  *  R  R  A  N  I  L  S  W  C  G  S  *  H  L  P  T  S  H  T  V  L  F  S  T  I  N  Y  S  K  L  T  C  L  T  N  L  D  T  A  K  F  S  Y  P  A  V  D  I  V  Y  Q  G  R  F  G  H  I  W  G  H  Q  L  C  T  E  T  Q  I  K  H  S  *  V  T  R  L  S  C  K  A  S  F  P  Y  N  Y  I  E  *  Y  L  S  W  L  A  I  I  L  F  K  K  </first_frame>
            <second_frame>  E  L  D  T  R  S  F  N  N  I  S  I  L  L  S  M  D  F  F  L  S  Y  K  R :   D  *  L  R  E  W  R  *  F  F  L  V  A  T  M  Y  L  S  R  D  L  F  S  R  *  M  *  T  N  P  M  V  Q  S  W  R  K  L  I  W  R  S  L  L  N  H  F  *  S  S  F  H  C  P  N  R  *  *  R  F  F  H  Q  :  I  A  G  G  R  *  Q  L  T  S  A  L  S  R  R  V  V  P  A  K  M  P  K  F  G  S  Q  Q  I  H  S  S  G  S  K  H  L  L  *  L  L  L  S  P  *  V  V  N  L  *  V  S  S  Y  I  L  N  I  Q  V  S  L  N  Q  R  L  R  R  R  S  S  Q  R  H  L  S  W  I  S  S  N  R  I  S  K  G  V  P  I  S  Y  P  G  V  V  P  D  I  F  P  L  L  I  P  F  S  F  Q  P  S  T  I  R  N  S  L  A  *  L  I  W  I  Q  P  S  F  H  I  L  Q  W  I  *  Y  I  K  V  D  L  G  I  S  G  G  I  N  Y  A  Q  R  L  K  *  N  I  V  R  S  P  D  Y  L  V  K  L  H  F  L  T  I  T  *  S  S  I  *  A  G  W  P  S  F  Y  S  K  S </second_frame>
            <third_frame>   S  *  T  P  G  A  S  T  I  Y  P  F  F  C  Q  W  T  S  S  F  H  T  K   : G  I  S  *  E  S  G  G  D  F  F  W  *  Q  Q  C  T  Y  R  E  I  C  F  Q  D  K  C  K  P  I  L  W  F  K  V  G  G  S  *  S  G  V  L  S  *  I  I  F  D  Q  A  S  I  V  P  I  V  N  E  G  S  S  T  R :   L  Q  V  G  D  N  S  L  L  P  L  S  P  A  E  W  Y  Q  Q  R  C  R  N  L  G  P  N  R  Y  T  A  V  A  A  S  T  S  Y  N  S  Y  *  V  H  E  *  *  T  S  R  C  P  A  I  S  *  T  S  K  S  L  *  T  K  G  L  E  G  G  H  L  R  G  I  C  H  G  S  L  P  T  E  L  V  K  A  C  Q  Y  L  I  L  V  W  F  L  T  S  S  H  F  S  Y  R  S  L  F  N  H  Q  L  F  E  T  H  L  P  D  *  S  G  Y  S  Q  V  F  I  S  C  S  G  Y  S  I  S  R  *  I  W  A  Y  L  G  A  S  I  M  H  R  D  S  N  K  T  *  L  G  H  Q  I  I  L  *  S  F  I  S  L  Q  L  H  R  V  V  F  K  L  V  G  H  H  S  I  Q  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0059I05.3" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42488" stop="42559"/>
                    <exon start="42862" stop="43051"/>
                    <exon start="43162" stop="43361"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>459</number_coding_nucleotides>
                  <number_encoded_amino_acids>153</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RARHPELQQYIHSSVNGLLPFIQKGLVERVAVIFSGSNNVPIERFVFKINVNQSYGSKLEEADLAFSLKSFLIKLPLSQSLMKVLPPDCRWEITAYFRSLPQSGTSKDAEIWVPTDTQQWQQAPLITPIKSMSSEPLGVQLYLEHPSLSEPKA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="53150" PGL_stop="44083"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53150" e_stop="53020"/>
            <exon e_start="52930" e_stop="52887"/>
            <exon e_start="49918" e_stop="49842"/>
            <exon e_start="48473" e_stop="48326"/>
            <exon e_start="47838" e_stop="47777"/>
            <exon e_start="47191" e_stop="47131"/>
            <exon e_start="46389" e_stop="46297"/>
            <exon e_start="46204" e_stop="46087"/>
            <exon e_start="44983" e_stop="44881"/>
            <exon e_start="44746" e_stop="44575"/>
            <exon e_start="44321" e_stop="44083"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.954" acc_prob="0.806" e_score="0.992"/>
          <exon-intron don_prob="0.994" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.612" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.831" acc_prob="0.739" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.709" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.878" acc_prob="0.913" e_score="1.000"/>
          <exon-intron don_prob="0.926" acc_prob="0.837" e_score="0.990"/>
          <exon-intron don_prob="0.994" acc_prob="1.000" e_score="0.988"/>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="53150" e_stop="53020" e_length="131"/>
          </exon>
          <intron i_serial="1" don_prob="0.954" acc_prob="0.806">
            <gDNA_intron_boundary i_start="53019" i_stop="52931" i_length="89"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="52930" e_stop="52887" e_length="44"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.997">
            <gDNA_intron_boundary i_start="52886" i_stop="49919" i_length="2968"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="49918" e_stop="49842" e_length="77"/>
          </exon>
          <intron i_serial="3" don_prob="0.612" acc_prob="0.993">
            <gDNA_intron_boundary i_start="49841" i_stop="48474" i_length="1368"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="48473" e_stop="48326" e_length="148"/>
          </exon>
          <intron i_serial="4" don_prob="0.990" acc_prob="0.995">
            <gDNA_intron_boundary i_start="48325" i_stop="47839" i_length="487"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="47838" e_stop="47777" e_length="62"/>
          </exon>
          <intron i_serial="5" don_prob="0.831" acc_prob="0.739">
            <gDNA_intron_boundary i_start="47776" i_stop="47192" i_length="585"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="47191" e_stop="47131" e_length="61"/>
          </exon>
          <intron i_serial="6" don_prob="0.991" acc_prob="1.000">
            <gDNA_intron_boundary i_start="47130" i_stop="46390" i_length="741"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="46389" e_stop="46297" e_length="93"/>
          </exon>
          <intron i_serial="7" don_prob="0.709" acc_prob="0.998">
            <gDNA_intron_boundary i_start="46296" i_stop="46205" i_length="92"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="46204" e_stop="46087" e_length="118"/>
          </exon>
          <intron i_serial="8" don_prob="0.878" acc_prob="0.913">
            <gDNA_intron_boundary i_start="46086" i_stop="44984" i_length="1103"/>
          </intron>
          <exon e_serial="9" e_score="0.990">
            <gDNA_exon_boundary e_start="44983" e_stop="44881" e_length="103"/>
          </exon>
          <intron i_serial="9" don_prob="0.926" acc_prob="0.837">
            <gDNA_intron_boundary i_start="44880" i_stop="44747" i_length="134"/>
          </intron>
          <exon e_serial="10" e_score="0.988">
            <gDNA_exon_boundary e_start="44746" e_stop="44575" e_length="172"/>
          </exon>
          <intron i_serial="10" don_prob="0.994" acc_prob="1.000">
            <gDNA_intron_boundary i_start="44574" i_stop="44322" i_length="253"/>
          </intron>
          <exon e_serial="11" e_score="0.979">
            <gDNA_exon_boundary e_start="44321" e_stop="44083" e_length="239"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53150" stop="53020"/>
              <exon start="52930" stop="52887"/>
              <exon start="49918" stop="49842"/>
              <exon start="48473" stop="48326"/>
              <exon start="47838" stop="47777"/>
              <exon start="47191" stop="47131"/>
              <exon start="46389" stop="46297"/>
              <exon start="46204" stop="46165"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U587875" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48361" stop="48326"/>
              <exon start="47838" stop="47777"/>
              <exon start="47191" stop="47131"/>
              <exon start="46389" stop="46297"/>
              <exon start="46204" stop="46087"/>
              <exon start="44983" stop="44881"/>
              <exon start="44746" stop="44575"/>
              <exon start="44321" stop="44083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U568683" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGAAGATCTGAACGACCAGCTTAGGAAACGCATGTTTAAGAAGCGCAGAGTTCGAAGACTTCGACTTGTAATTTTTAATGGATTATCTATCGAACTTAACACCTATGCTTTGATCCGTCCAACTAATCCAG : GGACAATTACTTGGCTTGATTCGATGACTAATCTTCCTTTGAAG : ACTGAGAGAACCTTCATATGTGCTGATACTGGTGCTATAGTTCAGGAGCCTCTAAAACGCTTTCAGTCTTACAAAAA : TGAGAATGTCATCTTTTCTGCGGATGAGCTTTCAGAAGTCAAAAGAGTTTCAACTGGACATCTTCGTCTGTTGGGCTTCAAGCCTTTGAGCTGCTTAAAAGACTATCATAACCTGAAGCCAGCAACTTTTGTCTTTCCCAGTGATGAG : GAAGTGGTTGGAAGCACTTGTCTTTTCGTTGCTCTCCAAAGATCAATGTTGCGGCTTAAGCG : TTTTGCAGTTGCTTTCTATGGGAATTTAAGTCATCCTCAATTGGTTGCTCTTGTTGCACAA : GATGAAGTAATGACTCCTAGTGGTCAAGTCGAGCCACCAGGGATGCATCTGATTTATCTTCCATATTCTGATGATATCAGACATGTTGAAGAG : CTTCATACTGATCCTAATTCCGTGCCTCATGCCACTGATGACCAGATAAAGAAGGCCTCCGCTTTAGTGAGACGTATTGACCTCAAAGATTTTTCTGTGTGGCAATTTGCTAATCCTG : CATTGCAGAGACATTATGCAGTATTACAAGCTCTTGCACTTGATGAAGATGAGATGCCTGAAATTAAAGACGAGACTCTTCCAGATGAAGAAGGAATGGCTAG : GCCTGGTATTGTCAAAGCATTGGAGGAATTCAAGCTCTCTGTTTATGGAGAGAGCTATAAGGATGAAGACTCAAACATTGAAGGAAAAGCTGAGCCAACTAGGAAACGGAAAGCAAATGCTATAAAAGAATATGGTAATTATGAGTGGGCTGACCTTGCAGATAATGGGAAG : TTGAAGGACATGACAGTTGTAGAATTGAAGTATTATCTAGGTGCACATGACCTTCCAGTCAGTGGAAAGAAAGAAGCCTTGATTAGTAGGATCTTAACTCACATGGGCAAGTGAGTTGTGACTTTCAGATCTTTGGCGGTCTGCCATTAGTTTGTACAGAATGGTTCTTTTTGCTGCAGCCTGTTGAGTAGTTAGTTTTTGTTTCTCGTTGAAACCTTTATGTCTTGGCATTATTATGG</gDNA_template>
            <first_frame> *  R  S  E  R  P  A  *  E  T  H  V  *  E  A  Q  S  S  K  T  S  T  C  N  F  *  W  I  I  Y  R  T  *  H  L  C  F  D  P  S  N  *  S  R :   D  N  Y  L  A  *  F  D  D  *  S  S  F  E   : D  *  E  N  L  H  M  C  *  Y  W  C  Y  S  S  G  A  S  K  T  L  S  V  L  Q  K  :  *  E  C  H  L  F  C  G  *  A  F  R  S  Q  K  S  F  N  W  T  S  S  S  V  G  L  Q  A  F  E  L  L  K  R  L  S  *  P  E  A  S  N  F  C  L  S  Q  *  *   : G  S  G  W  K  H  L  S  F  R  C  S  P  K  I  N  V  A  A  *  A  :  F  C  S  C  F  L  W  E  F  K  S  S  S  I  G  C  S  C  C  T   : R  *  S  N  D  S  *  W  S  S  R  A  T  R  D  A  S  D  L  S  S  I  F  *  *  Y  Q  T  C  *  R   : A  S  Y  *  S  *  F  R  A  S  C  H  *  *  P  D  K  E  G  L  R  F  S  E  T  Y  *  P  Q  R  F  F  C  V  A  I  C  *  S  C :   I  A  E  T  L  C  S  I  T  S  S  C  T  *  *  R  *  D  A  *  N  *  R  R  D  S  S  R  *  R  R  N  G  *  :  A  W  Y  C  Q  S  I  G  G  I  Q  A  L  C  L  W  R  E  L  *  G  *  R  L  K  H  *  R  K  S  *  A  N  *  E  T  E  S  K  C  Y  K  R  I  W  *  L  *  V  G  *  P  C  R  *  W  E   : V  E  G  H  D  S  C  R  I  E  V  L  S  R  C  T  *  P  S  S  Q  W  K  E  R  S  L  D  *  *  D  L  N  S  H  G  Q  V  S  C  D  F  Q  I  F  G  G  L  P  L  V  C  T  E  W  F  F  L  L  Q  P  V  E  *  L  V  F  V  S  R  *  N  L  Y  V  L  A  L  L  W </first_frame>
            <second_frame>  E  D  L  N  D  Q  L  R  K  R  M  F  K  K  R  R  V  R  R  L  R  L  V  I  F  N  G  L  S  I  E  L  N  T  Y  A  L  I  R  P  T  N  P   : G  T  I  T  W  L  D  S  M  T  N  L  P  L  K  :  T  E  R  T  F  I  C  A  D  T  G  A  I  V  Q  E  P  L  K  R  F  Q  S  Y  K  N :   E  N  V  I  F  S  A  D  E  L  S  E  V  K  R  V  S  T  G  H  L  R  L  L  G  F  K  P  L  S  C  L  K  D  Y  H  N  L  K  P  A  T  F  V  F  P  S  D  E  :  E  V  V  G  S  T  C  L  F  V  A  L  Q  R  S  M  L  R  L  K  R :   F  A  V  A  F  Y  G  N  L  S  H  P  Q  L  V  A  L  V  A  Q  :  D  E  V  M  T  P  S  G  Q  V  E  P  P  G  M  H  L  I  Y  L  P  Y  S  D  D  I  R  H  V  E  E  :  L  H  T  D  P  N  S  V  P  H  A  T  D  D  Q  I  K  K  A  S  A  L  V  R  R  I  D  L  K  D  F  S  V  W  Q  F  A  N  P   : A  L  Q  R  H  Y  A  V  L  Q  A  L  A  L  D  E  D  E  M  P  E  I  K  D  E  T  L  P  D  E  E  G  M  A  R :   P  G  I  V  K  A  L  E  E  F  K  L  S  V  Y  G  E  S  Y  K  D  E  D  S  N  I  E  G  K  A  E  P  T  R  K  R  K  A  N  A  I  K  E  Y  G  N  Y  E  W  A  D  L  A  D  N  G  K  :  L  K  D  M  T  V  V  E  L  K  Y  Y  L  G  A  H  D  L  P  V  S  G  K  K  E  A  L  I  S  R  I  L  T  H  M  G  K  *  V  V  T  F  R  S  L  A  V  C  H  *  F  V  Q  N  G  S  F  C  C  S  L  L  S  S  *  F  L  F  L  V  E  T  F  M  S  W  H  Y  Y   </second_frame>
            <third_frame>   K  I  *  T  T  S  L  G  N  A  C  L  R  S  A  E  F  E  D  F  D  L  *  F  L  M  D  Y  L  S  N  L  T  P  M  L  *  S  V  Q  L  I  Q  :  G  Q  L  L  G  L  I  R  *  L  I  F  L  *  R :   L  R  E  P  S  Y  V  L  I  L  V  L  *  F  R  S  L  *  N  A  F  S  L  T  K   : M  R  M  S  S  F  L  R  M  S  F  Q  K  S  K  E  F  Q  L  D  I  F  V  C  W  A  S  S  L  *  A  A  *  K  T  I  I  T  *  S  Q  Q  L  L  S  F  P  V  M  R :   K  W  L  E  A  L  V  F  S  L  L  S  K  D  Q  C  C  G  L  S   : V  L  Q  L  L  S  M  G  I  *  V  I  L  N  W  L  L  L  L  H  K :   M  K  *  *  L  L  V  V  K  S  S  H  Q  G  C  I  *  F  I  F  H  I  L  M  I  S  D  M  L  K  S :   F  I  L  I  L  I  P  C  L  M  P  L  M  T  R  *  R  R  P  P  L  *  *  D  V  L  T  S  K  I  F  L  C  G  N  L  L  I  L  :  H  C  R  D  I  M  Q  Y  Y  K  L  L  H  L  M  K  M  R  C  L  K  L  K  T  R  L  F  Q  M  K  K  E  W  L   : G  L  V  L  S  K  H  W  R  N  S  S  S  L  F  M  E  R  A  I  R  M  K  T  Q  T  L  K  E  K  L  S  Q  L  G  N  G  K  Q  M  L  *  K  N  M  V  I  M  S  G  L  T  L  Q  I  M  G  S :   *  R  T  *  Q  L  *  N  *  S  I  I  *  V  H  M  T  F  Q  S  V  E  R  K  K  P  *  L  V  G  S  *  L  T  W  A  S  E  L  *  L  S  D  L  W  R  S  A  I  S  L  Y  R  M  V  L  F  A  A  A  C  *  V  V  S  F  C  F  S  L  K  P  L  C  L  G  I  I  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0059I05.3" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53149" stop="53020"/>
                    <exon start="52930" stop="52887"/>
                    <exon start="49918" stop="49842"/>
                    <exon start="48473" stop="48326"/>
                    <exon start="47838" stop="47777"/>
                    <exon start="47191" stop="47131"/>
                    <exon start="46389" stop="46297"/>
                    <exon start="46204" stop="46087"/>
                    <exon start="44983" stop="44881"/>
                    <exon start="44746" stop="44575"/>
                    <exon start="44321" stop="44208"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1119</number_coding_nucleotides>
                  <number_encoded_amino_acids>373</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EDLNDQLRKRMFKKRRVRRLRLVIFNGLSIELNTYALIRPTNPGTITWLDSMTNLPLKTERTFICADTGAIVQEPLKRFQSYKNENVIFSADELSEVKRVSTGHLRLLGFKPLSCLKDYHNLKPATFVFPSDEEVVGSTCLFVALQRSMLRLKRFAVAFYGNLSHPQLVALVAQDEVMTPSGQVEPPGMHLIYLPYSDDIRHVEELHTDPNSVPHATDDQIKKASALVRRIDLKDFSVWQFANPALQRHYAVLQALALDEDEMPEIKDETLPDEEGMARPGIVKALEEFKLSVYGESYKDEDSNIEGKAEPTRKRKANAIKEYGNYEWADLADNGKLKDMTVVELKYYLGAHDLPVSGKKEALISRILTHMGK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="58379" PGL_stop="54907"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58379" e_stop="58287"/>
            <exon e_start="58108" e_stop="58031"/>
            <exon e_start="57016" e_stop="56900"/>
            <exon e_start="56386" e_stop="56272"/>
            <exon e_start="55601" e_stop="55496"/>
            <exon e_start="55413" e_stop="55296"/>
            <exon e_start="55122" e_stop="55039"/>
            <exon e_start="54965" e_stop="54907"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.865" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.424" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.998" e_score="0.992"/>
          <exon-intron don_prob="0.965" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.763"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="58379" e_stop="58287" e_length="93"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.958">
            <gDNA_intron_boundary i_start="58286" i_stop="58109" i_length="178"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="58108" e_stop="58031" e_length="78"/>
          </exon>
          <intron i_serial="2" don_prob="0.960" acc_prob="1.000">
            <gDNA_intron_boundary i_start="58030" i_stop="57017" i_length="1014"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="57016" e_stop="56900" e_length="117"/>
          </exon>
          <intron i_serial="3" don_prob="0.865" acc_prob="0.998">
            <gDNA_intron_boundary i_start="56899" i_stop="56387" i_length="513"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="56386" e_stop="56272" e_length="115"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="56271" i_stop="55602" i_length="670"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="55601" e_stop="55496" e_length="106"/>
          </exon>
          <intron i_serial="5" don_prob="0.994" acc_prob="0.424">
            <gDNA_intron_boundary i_start="55495" i_stop="55414" i_length="82"/>
          </intron>
          <exon e_serial="6" e_score="0.992">
            <gDNA_exon_boundary e_start="55413" e_stop="55296" e_length="118"/>
          </exon>
          <intron i_serial="6" don_prob="0.985" acc_prob="0.998">
            <gDNA_intron_boundary i_start="55295" i_stop="55123" i_length="173"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="55122" e_stop="55039" e_length="84"/>
          </exon>
          <intron i_serial="7" don_prob="0.965" acc_prob="0.999">
            <gDNA_intron_boundary i_start="55038" i_stop="54966" i_length="73"/>
          </intron>
          <exon e_serial="8" e_score="0.763">
            <gDNA_exon_boundary e_start="54965" e_stop="54907" e_length="59"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58379" stop="58287"/>
              <exon start="58108" stop="58031"/>
              <exon start="57016" stop="56900"/>
              <exon start="56386" stop="56272"/>
              <exon start="55601" stop="55496"/>
              <exon start="55413" stop="55296"/>
              <exon start="55122" stop="55039"/>
              <exon start="54965" stop="54907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U567086" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGTTCAATAAAATCTTCGATATGTCAATGGACCTCGACCCAGATGAAGTCTTCCGTGATGATGAAGATGACCCTGAAAATGAATTCTTCAAG : GAAAGAGATAATACTAAGGAGTTCTTGGTATATCTTGTGGATGCTTCACCTAAAATGTTTTCCTCTACTTGCCCAACG : GATGATGAAAAGATTGCAACTCATTTTCAAGTTGCCGTCAGCTCAATTGCACAGTCTCTCAGAACTCAGATTATTAATAGGTCTTATGATGAAGTTTCTATATGCTTCTTTAACACT : CGGGGAAAAAAGAACTTGCAGGACCTAAGTGGCGTTTATGTATTTAATGTCCGAGAAAGAGAGGATCTGGACAGACCAACAGCTAGGCTAATTAAAGAATTTGATCAAATAGAAG : AAAGATTTGAAAAAGAAATAGGAAGTAAGTACGGCATTGTGCCTGGCTCTCGTGACAATTCTCTTTACAATGCTCTTTGGGTTGCACAAGCCCTTCTCCGTAAAGG : ATCTGCAAAAACTGCTGATAAACGTATTCTCTTGCTTACAAATGAAGATGATCCTTTTGGTAATCTCAAAGGTGTCATAAAAGTGGATATGATGAGGACAACGATGCAGCGTGCCAAA : GATGCTCAAGATCTTGGTATTACAATTGAGCTTCTTCCACTAAGCCGGCCAGATGATGAGTTCAACGTTTCCCTTTTTTATGCT : GATTTACTTGGTCTGGAGGGTGATGACCTTGCTCAGTTCAAAGCTCTGATAGGAGAAAG</gDNA_template>
            <first_frame> L  F  N  K  I  F  D  M  S  M  D  L  D  P  D  E  V  F  R  D  D  E  D  D  P  E  N  E  F  F  K  :  E  R  D  N  T  K  E  F  L  V  Y  L  V  D  A  S  P  K  M  F  S  S  T  C  P  T  :  D  D  E  K  I  A  T  H  F  Q  V  A  V  S  S  I  A  Q  S  L  R  T  Q  I  I  N  R  S  Y  D  E  V  S  I  C  F  F  N  T  :  R  G  K  K  N  L  Q  D  L  S  G  V  Y  V  F  N  V  R  E  R  E  D  L  D  R  P  T  A  R  L  I  K  E  F  D  Q  I  E   : E  R  F  E  K  E  I  G  S  K  Y  G  I  V  P  G  S  R  D  N  S  L  Y  N  A  L  W  V  A  Q  A  L  L  R  K  G :   S  A  K  T  A  D  K  R  I  L  L  L  T  N  E  D  D  P  F  G  N  L  K  G  V  I  K  V  D  M  M  R  T  T  M  Q  R  A  K  :  D  A  Q  D  L  G  I  T  I  E  L  L  P  L  S  R  P  D  D  E  F  N  V  S  L  F  Y  A  :  D  L  L  G  L  E  G  D  D  L  A  Q  F  K  A  L  I  G  E   </first_frame>
            <second_frame>  C  S  I  K  S  S  I  C  Q  W  T  S  T  Q  M  K  S  S  V  M  M  K  M  T  L  K  M  N  S  S  R :   K  E  I  I  L  R  S  S  W  Y  I  L  W  M  L  H  L  K  C  F  P  L  L  A  Q  R :   M  M  K  R  L  Q  L  I  F  K  L  P  S  A  Q  L  H  S  L  S  E  L  R  L  L  I  G  L  M  M  K  F  L  Y  A  S  L  T  L :   G  E  K  R  T  C  R  T  *  V  A  F  M  Y  L  M  S  E  K  E  R  I  W  T  D  Q  Q  L  G  *  L  K  N  L  I  K  *  K  :  K  D  L  K  K  K  *  E  V  S  T  A  L  C  L  A  L  V  T  I  L  F  T  M  L  F  G  L  H  K  P  F  S  V  K   : D  L  Q  K  L  L  I  N  V  F  S  C  L  Q  M  K  M  I  L  L  V  I  S  K  V  S  *  K  W  I  *  *  G  Q  R  C  S  V  P  K :   M  L  K  I  L  V  L  Q  L  S  F  F  H  *  A  G  Q  M  M  S  S  T  F  P  F  F  M  L :   I  Y  L  V  W  R  V  M  T  L  L  S  S  K  L  *  *  E  K  </second_frame>
            <third_frame>   V  Q  *  N  L  R  Y  V  N  G  P  R  P  R  *  S  L  P  *  *  *  R  *  P  *  K  *  I  L  Q   : G  K  R  *  Y  *  G  V  L  G  I  S  C  G  C  F  T  *  N  V  F  L  Y  L  P  N   : G  *  *  K  D  C  N  S  F  S  S  C  R  Q  L  N  C  T  V  S  Q  N  S  D  Y  *  *  V  L  *  *  S  F  Y  M  L  L  *  H   : S  G  K  K  E  L  A  G  P  K  W  R  L  C  I  *  C  P  R  K  R  G  S  G  Q  T  N  S  *  A  N  *  R  I  *  S  N  R  R :   K  I  *  K  R  N  R  K  *  V  R  H  C  A  W  L  S  *  Q  F  S  L  Q  C  S  L  G  C  T  S  P  S  P  *  R  :  I  C  K  N  C  *  *  T  Y  S  L  A  Y  K  *  R  *  S  F  W  *  S  Q  R  C  H  K  S  G  Y  D  E  D  N  D  A  A  C  Q   : R  C  S  R  S  W  Y  Y  N  *  A  S  S  T  K  P  A  R  *  *  V  Q  R  F  P  F  L  C   : *  F  T  W  S  G  G  *  *  P  C  S  V  Q  S  S  D  R  R  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0059I05.3" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58379" stop="58287"/>
                    <exon start="58108" stop="58031"/>
                    <exon start="57016" stop="56900"/>
                    <exon start="56386" stop="56272"/>
                    <exon start="55601" stop="55496"/>
                    <exon start="55413" stop="55296"/>
                    <exon start="55122" stop="55039"/>
                    <exon start="54965" stop="54909"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>768</number_coding_nucleotides>
                  <number_encoded_amino_acids>256</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFNKIFDMSMDLDPDEVFRDDEDDPENEFFKERDNTKEFLVYLVDASPKMFSSTCPTDDEKIATHFQVAVSSIAQSLRTQIINRSYDEVSICFFNTRGKKNLQDLSGVYVFNVREREDLDRPTARLIKEFDQIEERFEKEIGSKYGIVPGSRDNSLYNALWVAQALLRKGSAKTADKRILLLTNEDDPFGNLKGVIKVDMMRTTMQRAKDAQDLGITIELLPLSRPDDEFNVSLFYADLLGLEGDDLAQFKALIGE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="62111" PGL_stop="59549"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62111" e_stop="62060"/>
            <exon e_start="61042" e_stop="60903"/>
            <exon e_start="60784" e_stop="60645"/>
            <exon e_start="60558" e_stop="60398"/>
            <exon e_start="59911" e_stop="59776"/>
            <exon e_start="59667" e_stop="59549"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="0.997" e_score="0.885"/>
          <exon-intron don_prob="0.708" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.885">
            <gDNA_exon_boundary e_start="62111" e_stop="62060" e_length="52"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="0.997">
            <gDNA_intron_boundary i_start="62059" i_stop="61043" i_length="1017"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="61042" e_stop="60903" e_length="140"/>
          </exon>
          <intron i_serial="2" don_prob="0.708" acc_prob="0.996">
            <gDNA_intron_boundary i_start="60902" i_stop="60785" i_length="118"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="60784" e_stop="60645" e_length="140"/>
          </exon>
          <intron i_serial="3" don_prob="0.989" acc_prob="0.997">
            <gDNA_intron_boundary i_start="60644" i_stop="60559" i_length="86"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="60558" e_stop="60398" e_length="161"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="60397" i_stop="59912" i_length="486"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="59911" e_stop="59776" e_length="136"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.000">
            <gDNA_intron_boundary i_start="59775" i_stop="59668" i_length="108"/>
          </intron>
          <exon e_serial="6" e_score="0.992">
            <gDNA_exon_boundary e_start="59667" e_stop="59549" e_length="119"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62111" stop="62060"/>
              <exon start="61042" stop="60903"/>
              <exon start="60784" stop="60645"/>
              <exon start="60558" stop="60398"/>
              <exon start="59911" stop="59776"/>
              <exon start="59667" stop="59549"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U564933" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACGTCTCCGTCGAGCTGAAAAATCACATCTGAAGTGTCTCTTGGTCCAAGTG : ATAGCTGATGCTCTTTACTACAATGCACCCTTGACATGGAACATCCTTCAAAAGCTTGGCCTTGCTCTAGAGGTGTTTAATCTCTGGTTTCTGATGTTGGGACAAACAAAAAAGAGCGGAAAACGGGTTAACTTCAAAAG : GGAACATGACAAAAAGGTTTGCTGCTTGGGCTTGACATCTTTGCTCCCTCTTCCTGTGGATCAATTCCCAAGGGAAGCCTTAGATCGTGTTTTCAAAGCAACTCTAGATCTGCTTATTGCCTACAAAGATCAAGTAGCAG : AAGCGGCTAAGGAGGATGAGGCAGAAGACGATGATGATATGAATGGCTTGCAAACTGATGAGGATGACGATGAAGATGACGAGTCTGACAAGGAAATGGGGGATGATGCTGAGGAAGGGGATGAAGCTGACAGTACTAGGCTTCAAAAATTGGCTGCACAG : GCAAAGGCTTTCCGCTCACATGACGAGGATGATGATGATGATGACTCTGATGACGATTTTAGTGATGATGATGAAGAGATGCAGTCACCCCTTGATGAGGTGGACCCTTTCATTTTCTTTGTGGAAACAATTAAAG : CTATGCAAGCATCTGATCCAGTGAAGTTCCAGAGCCTGACCCAGACTTTGGACTTCCGTTATCAAGCATTGGCAAATGGTGTTGCTGTGCATGCTGAGGAGAGAAGAGCAGAGATAGAG</gDNA_template>
            <first_frame> T  S  P  S  S  *  K  I  T  S  E  V  S  L  G  P  S   : D  S  *  C  S  L  L  Q  C  T  L  D  M  E  H  P  S  K  A  W  P  C  S  R  G  V  *  S  L  V  S  D  V  G  T  N  K  K  E  R  K  T  G  *  L  Q  K  :  G  T  *  Q  K  G  L  L  L  G  L  D  I  F  A  P  S  S  C  G  S  I  P  K  G  S  L  R  S  C  F  Q  S  N  S  R  S  A  Y  C  L  Q  R  S  S  S  R :   S  G  *  G  G  *  G  R  R  R  *  *  Y  E  W  L  A  N  *  *  G  *  R  *  R  *  R  V  *  Q  G  N  G  G  *  C  *  G  R  G  *  S  *  Q  Y  *  A  S  K  I  G  C  T   : G  K  G  F  P  L  T  *  R  G  *  *  *  *  *  L  *  *  R  F  *  *  *  *  *  R  D  A  V  T  P  *  *  G  G  P  F  H  F  L  C  G  N  N  *  S :   Y  A  S  I  *  S  S  E  V  P  E  P  D  P  D  F  G  L  P  L  S  S  I  G  K  W  C  C  C  A  C  *  G  E  K  S  R  D  R  </first_frame>
            <second_frame>  R  L  R  R  A  E  K  S  H  L  K  C  L  L  V  Q  V  :  I  A  D  A  L  Y  Y  N  A  P  L  T  W  N  I  L  Q  K  L  G  L  A  L  E  V  F  N  L  W  F  L  M  L  G  Q  T  K  K  S  G  K  R  V  N  F  K  R :   E  H  D  K  K  V  C  C  L  G  L  T  S  L  L  P  L  P  V  D  Q  F  P  R  E  A  L  D  R  V  F  K  A  T  L  D  L  L  I  A  Y  K  D  Q  V  A   : E  A  A  K  E  D  E  A  E  D  D  D  D  M  N  G  L  Q  T  D  E  D  D  D  E  D  D  E  S  D  K  E  M  G  D  D  A  E  E  G  D  E  A  D  S  T  R  L  Q  K  L  A  A  Q  :  A  K  A  F  R  S  H  D  E  D  D  D  D  D  D  S  D  D  D  F  S  D  D  D  E  E  M  Q  S  P  L  D  E  V  D  P  F  I  F  F  V  E  T  I  K   : A  M  Q  A  S  D  P  V  K  F  Q  S  L  T  Q  T  L  D  F  R  Y  Q  A  L  A  N  G  V  A  V  H  A  E  E  R  R  A  E  I  E </second_frame>
            <third_frame>   V  S  V  E  L  K  N  H  I  *  S  V  S  W  S  K  * :   *  L  M  L  F  T  T  M  H  P  *  H  G  T  S  F  K  S  L  A  L  L  *  R  C  L  I  S  G  F  *  C  W  D  K  Q  K  R  A  E  N  G  L  T  S  K   : G  N  M  T  K  R  F  A  A  W  A  *  H  L  C  S  L  F  L  W  I  N  S  Q  G  K  P  *  I  V  F  S  K  Q  L  *  I  C  L  L  P  T  K  I  K  *  Q  :  K  R  L  R  R  M  R  Q  K  T  M  M  I  *  M  A  C  K  L  M  R  M  T  M  K  M  T  S  L  T  R  K  W  G  M  M  L  R  K  G  M  K  L  T  V  L  G  F  K  N  W  L  H  R :   Q  R  L  S  A  H  M  T  R  M  M  M  M  M  T  L  M  T  I  L  V  M  M  M  K  R  C  S  H  P  L  M  R  W  T  L  S  F  S  L  W  K  Q  L  K  :  L  C  K  H  L  I  Q  *  S  S  R  A  *  P  R  L  W  T  S  V  I  K  H  W  Q  M  V  L  L  C  M  L  R  R  E  E  Q  R  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0059I05.3" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62110" stop="62060"/>
                    <exon start="61042" stop="60903"/>
                    <exon start="60784" stop="60645"/>
                    <exon start="60558" stop="60398"/>
                    <exon start="59911" stop="59776"/>
                    <exon start="59667" stop="59549"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>747</number_coding_nucleotides>
                  <number_encoded_amino_acids>249</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RLRRAEKSHLKCLLVQVIADALYYNAPLTWNILQKLGLALEVFNLWFLMLGQTKKSGKRVNFKREHDKKVCCLGLTSLLPLPVDQFPREALDRVFKATLDLLIAYKDQVAEAAKEDEAEDDDDMNGLQTDEDDDEDDESDKEMGDDAEEGDEADSTRLQKLAAQAKAFRSHDEDDDDDDSDDDFSDDDEEMQSPLDEVDPFIFFVETIKAMQASDPVKFQSLTQTLDFRYQALANGVAVHAEERRAEIE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="71467" PGL_stop="67594"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="71467" e_stop="71228"/>
            <exon e_start="69361" e_stop="69226"/>
            <exon e_start="69051" e_stop="68964"/>
            <exon e_start="68826" e_stop="68677"/>
            <exon e_start="68130" e_stop="67968"/>
            <exon e_start="67653" e_stop="67594"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.980" e_score="0.983"/>
          <exon-intron don_prob="0.942" acc_prob="0.957" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.429" acc_prob="0.998" e_score="0.993"/>
          <exon-intron don_prob="0.146" acc_prob="0.942" e_score="1.000"/>
          <exon-only e_score="0.933"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="71467" e_stop="71228" e_length="240"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.980">
            <gDNA_intron_boundary i_start="71227" i_stop="69362" i_length="1866"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="69361" e_stop="69226" e_length="136"/>
          </exon>
          <intron i_serial="2" don_prob="0.942" acc_prob="0.957">
            <gDNA_intron_boundary i_start="69225" i_stop="69052" i_length="174"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="69051" e_stop="68964" e_length="88"/>
          </exon>
          <intron i_serial="3" don_prob="0.962" acc_prob="0.997">
            <gDNA_intron_boundary i_start="68963" i_stop="68827" i_length="137"/>
          </intron>
          <exon e_serial="4" e_score="0.993">
            <gDNA_exon_boundary e_start="68826" e_stop="68677" e_length="150"/>
          </exon>
          <intron i_serial="4" don_prob="0.429" acc_prob="0.998">
            <gDNA_intron_boundary i_start="68676" i_stop="68131" i_length="546"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="68130" e_stop="67968" e_length="163"/>
          </exon>
          <intron i_serial="5" don_prob="0.146" acc_prob="0.942">
            <gDNA_intron_boundary i_start="67967" i_stop="67654" i_length="314"/>
          </intron>
          <exon e_serial="6" e_score="0.933">
            <gDNA_exon_boundary e_start="67653" e_stop="67594" e_length="60"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71467" stop="71228"/>
              <exon start="69361" stop="69226"/>
              <exon start="69051" stop="68964"/>
              <exon start="68826" stop="68677"/>
              <exon start="68130" stop="67968"/>
              <exon start="67653" stop="67594"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U585741" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACACACTCCAATTTTTCGCTGTCTCTGTCTGCAACTTCTATTCATCCTTTCTTCTCTCTCTTTATATACATAAACTCTAGAAGAAGTCCTTTCTTCTAGGGTTCATACAATCATTTGTTTTCATTATCCTTTTTGCTGAAAGTTGAAGTTATGGATTTTCAGAACCTTGCTGTCATACTTGCAGGTGCTCTAAGTCCGAATCCGGATGAACGGAAAGCTGCTGAGAACAGTCTCAATCAG : TTTCAGCATACCCCACAACATCTTGTGAGACTGCTGCAAATCATAGTAGATGGGTCCTGTGACATGGCAGTCCGACAGGTGGCTAGTATCCATTTTAAGAACTTTGTTGCAAAGAACTGGTGCCCTCATGATCCTG : CTGAGCAATCAAAAATTATGCCAAGTGACAAGGAATTGGTGAGGCAAAATATTCTCATATTTATTGCACAGGTTCCTTCATTGTTGAG : GGTACAGTTGGGGGAATGCATTAAAACAATGATACATGCAGACTACCCGGAGCAGTGGCCAACTCTTCTGCCTTGGATAAAGCATAATCTGCAGGATCAGCAAGTATATGGTGCTTTGTTTGTTCTGAGAATACTCTCGAGGAAATATGA : ATTCAAATCAGACGAGGAGAGAACACCTGTTTATCATGTCGTTGAGGAAACTTTTCCACATCTTCTCAACATATTCAACAAACTTGTTCAGATAACAAATCCGTCAATTGAAGTAGCCGACCTGATCAAGCTCATTTGCAAAATATTCTGGTCATCCATTTAT : TTGGAGATTCCGAAGCAGTTGTTTGACCCAAATGTGTTCAATGCCTGGATGGTTCTTTTC</gDNA_template>
            <first_frame> T  H  S  N  F  S  L  S  L  S  A  T  S  I  H  P  F  F  S  L  F  I  Y  I  N  S  R  R  S  P  F  F  *  G  S  Y  N  H  L  F  S  L  S  F  L  L  K  V  E  V  M  D  F  Q  N  L  A  V  I  L  A  G  A  L  S  P  N  P  D  E  R  K  A  A  E  N  S  L  N  Q  :  F  Q  H  T  P  Q  H  L  V  R  L  L  Q  I  I  V  D  G  S  C  D  M  A  V  R  Q  V  A  S  I  H  F  K  N  F  V  A  K  N  W  C  P  H  D  P   : A  E  Q  S  K  I  M  P  S  D  K  E  L  V  R  Q  N  I  L  I  F  I  A  Q  V  P  S  L  L  R :   V  Q  L  G  E  C  I  K  T  M  I  H  A  D  Y  P  E  Q  W  P  T  L  L  P  W  I  K  H  N  L  Q  D  Q  Q  V  Y  G  A  L  F  V  L  R  I  L  S  R  K  Y  E :   F  K  S  D  E  E  R  T  P  V  Y  H  V  V  E  E  T  F  P  H  L  L  N  I  F  N  K  L  V  Q  I  T  N  P  S  I  E  V  A  D  L  I  K  L  I  C  K  I  F  W  S  S  I  Y  :  L  E  I  P  K  Q  L  F  D  P  N  V  F  N  A  W  M  V  L  F </first_frame>
            <second_frame>  H  T  P  I  F  R  C  L  C  L  Q  L  L  F  I  L  S  S  L  S  L  Y  T  *  T  L  E  E  V  L  S  S  R  V  H  T  I  I  C  F  H  Y  P  F  C  *  K  L  K  L  W  I  F  R  T  L  L  S  Y  L  Q  V  L  *  V  R  I  R  M  N  G  K  L  L  R  T  V  S  I  S :   F  S  I  P  H  N  I  L  *  D  C  C  K  S  *  *  M  G  P  V  T  W  Q  S  D  R  W  L  V  S  I  L  R  T  L  L  Q  R  T  G  A  L  M  I  L  :  L  S  N  Q  K  L  C  Q  V  T  R  N  W  *  G  K  I  F  S  Y  L  L  H  R  F  L  H  C  *   : G  Y  S  W  G  N  A  L  K  Q  *  Y  M  Q  T  T  R  S  S  G  Q  L  F  C  L  G  *  S  I  I  C  R  I  S  K  Y  M  V  L  C  L  F  *  E  Y  S  R  G  N  M   : N  S  N  Q  T  R  R  E  H  L  F  I  M  S  L  R  K  L  F  H  I  F  S  T  Y  S  T  N  L  F  R  *  Q  I  R  Q  L  K  *  P  T  *  S  S  S  F  A  K  Y  S  G  H  P  F  I :   W  R  F  R  S  S  C  L  T  Q  M  C  S  M  P  G  W  F  F   </second_frame>
            <third_frame>   T  L  Q  F  F  A  V  S  V  C  N  F  Y  S  S  F  L  L  S  L  Y  I  H  K  L  *  K  K  S  F  L  L  G  F  I  Q  S  F  V  F  I  I  L  F  A  E  S  *  S  Y  G  F  S  E  P  C  C  H  T  C  R  C  S  K  S  E  S  G  *  T  E  S  C  *  E  Q  S  Q  S   : V  S  A  Y  P  T  T  S  C  E  T  A  A  N  H  S  R  W  V  L  *  H  G  S  P  T  G  G  *  Y  P  F  *  E  L  C  C  K  E  L  V  P  S  *  S  C :   *  A  I  K  N  Y  A  K  *  Q  G  I  G  E  A  K  Y  S  H  I  Y  C  T  G  S  F  I  V  E  :  G  T  V  G  G  M  H  *  N  N  D  T  C  R  L  P  G  A  V  A  N  S  S  A  L  D  K  A  *  S  A  G  S  A  S  I  W  C  F  V  C  S  E  N  T  L  E  E  I  *  :  I  Q  I  R  R  G  E  N  T  C  L  S  C  R  *  G  N  F  S  T  S  S  Q  H  I  Q  Q  T  C  S  D  N  K  S  V  N  *  S  S  R  P  D  Q  A  H  L  Q  N  I  L  V  I  H  L   : F  G  D  S  E  A  V  V  *  P  K  C  V  Q  C  L  D  G  S  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0059I05.3" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71368" stop="71228"/>
                    <exon start="69361" stop="69226"/>
                    <exon start="69051" stop="68964"/>
                    <exon start="68826" stop="68677"/>
                    <exon start="68130" stop="67968"/>
                    <exon start="67653" stop="67594"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>738</number_coding_nucleotides>
                  <number_encoded_amino_acids>246</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GSYNHLFSLSFLLKVEVMDFQNLAVILAGALSPNPDERKAAENSLNQFQHTPQHLVRLLQIIVDGSCDMAVRQVASIHFKNFVAKNWCPHDPAEQSKIMPSDKELVRQNILIFIAQVPSLLRVQLGECIKTMIHADYPEQWPTLLPWIKHNLQDQQVYGALFVLRILSRKYEFKSDEERTPVYHVVEETFPHLLNIFNKLVQITNPSIEVADLIKLICKIFWSSIYLEIPKQLFDPNVFNAWMVLF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="76753" PGL_stop="79459"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="76753" e_stop="78112"/>
            <exon e_start="78196" e_stop="78247"/>
            <exon e_start="78334" e_stop="78408"/>
            <exon e_start="78503" e_stop="78722"/>
            <exon e_start="78975" e_stop="79098"/>
            <exon e_start="79212" e_stop="79459"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.945" acc_prob="0.994" e_score="0.996"/>
          <exon-intron don_prob="0.879" acc_prob="0.535" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="0.999" e_score="0.991"/>
          <exon-intron don_prob="0.000" acc_prob="0.892" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="76753" e_stop="78112" e_length="1360"/>
          </exon>
          <intron i_serial="1" don_prob="0.945" acc_prob="0.994">
            <gDNA_intron_boundary i_start="78113" i_stop="78195" i_length="83"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="78196" e_stop="78247" e_length="52"/>
          </exon>
          <intron i_serial="2" don_prob="0.879" acc_prob="0.535">
            <gDNA_intron_boundary i_start="78248" i_stop="78333" i_length="86"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="78334" e_stop="78408" e_length="75"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="0.965">
            <gDNA_intron_boundary i_start="78409" i_stop="78502" i_length="94"/>
          </intron>
          <exon e_serial="4" e_score="0.991">
            <gDNA_exon_boundary e_start="78503" e_stop="78722" e_length="220"/>
          </exon>
          <intron i_serial="4" don_prob="0.957" acc_prob="0.999">
            <gDNA_intron_boundary i_start="78723" i_stop="78974" i_length="252"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="78975" e_stop="79098" e_length="124"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.892">
            <gDNA_intron_boundary i_start="79099" i_stop="79211" i_length="113"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="79212" e_stop="79459" e_length="248"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76753" stop="78112"/>
              <exon start="78196" stop="78247"/>
              <exon start="78334" stop="78408"/>
              <exon start="78503" stop="78722"/>
              <exon start="78975" stop="79098"/>
              <exon start="79212" stop="79459"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U573891" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTCAGTTGCGGCGGGAAACGCCATTCTCCCTTAATCCGCCGTTCTATCGAACCCTAGAAACCCAAATTCCAGTGCCAATTCAGTTAAAAATCTATCCTTTTTGACGGAATCAAAGAGAAAAATCAAATTAATTTGGTTTTGTGCATCTTTTTGTTCAATTATGGCTTTTCCGTTAACTGATTCAACTCTTTCGCCCAATGATGATACGAATGCTAAGCAGTTGTTGGAAGAGGAGGAACGAAATCAACAGGTGGATGGAGAGGATGACGATCGAGAGAGAGTTACTCCTTTGAGATATGTCCCATTGTGCGATGTGTACTCCGCTACTTCCCCTTACGTGGGCGCTAGTGGGTCGAAAAAAGTTAAAGCTGCTCGCAAAATCCTCCCACATTTGGAGACCGAAGATCACCACAAGCATTCGCTAACCCATCACATTTCTTCAATGTCTGGAAGGGAACTCCCTATTATTCACTTCTACACTCGCCGTCGCAAAAGGAAACGACACGAACCTTCTTTTTACGACTCGTTAATCTCTCGATCGGTGAAATTAGCTAATGGTGACAGAGAAAGTGGGGTTGATGACGGTGAAGGAAATGAAGTGGGTGTGAAATTTAAAGAGAATCAGAGGAGAAAGGAGCGTTATTCAAACCCATTTTCTCCGCAGATGAAATTAGGGAATTTCTCCAATGGAAATAGAGAAGACGAGGGAAGAGACCATGAAATGGTTTTAAATAATAAGCAGAAGCGAAAAGTGGGCAATTCGAACCAAGTTCCTCACCCGAAAAAATTAGCCAATATCTTCAATGGAAACATAGAAGATGAGAGTGAAGACAAGGAGAAGCTTATAAAGAGTAGGGATAAGCAGAATAAGAATGTAGGAGATTTAAAGCTAGTTTCTCACTCTGTCAGATTAGCCAATTCTTCCAAGGGAAACAGAATAGACGAGGGGGAAACTGAGGACGGAGAAGAGGAAGTGGTTATTAAGAATAAGGAGAAGGTGGAAAATTTAGAAGTAGTGGATTTTTGCATCGAGAGTGAGCGGGATGACCACGGAGAATATGATGGAGCAGTGGTTGTGAAACATATTATGAAGAAGGAGAAGAAGAGGAGTAAGGTGGTTAATTCAGAGCTGGAAAAAAATTTGGGGGTAGAAGCTAATGTAATTAGTCTGTTGGATGAGTCTTGTTCGAGAGGAACTCGAAATAATGCTGGTAAAAATAAAATCGACACCAATCATGGTAGCAATTCCAAAGATTTTAACTCAACGGGCAACATGAAGGAACAAAAAGAACATTGTATTTTGGGGAATAGTTTGAATAAAAAATGCTCAGGGTCAATTCGGACAAAGAAATGGGTTTG : GCTGAGTTTTGAAGGAGTTGATCCCAAGAAATTTATTGGACTACAATGTAAG : GCGTATTGGCCATTAGATGCTGTTTGGTACACTGGTCGTATAACTGGGTACAACTCAGAGACTGGACGACATCAT : GTGAAATATGTAGATGGGGATGAAGAAGATCTGCTCTTATCAAATGAAAGGATCAAGTTTTCTGTTACACTTGAGGAAATGAATCGTCTGAAGTTGAGACCCCGCGATACGAGTCCTGAAACTGATGTAATCGGTGTTGATGAAATGATTGTATTAGCTGCTAGTTTAGCTGATTGTGAAGCTCTTGAGCCCGGAGATATTATATGGGCCAAGCTGACTG : GTCATGCCATGTGGCCTGCCATTGTTTTAGATGAATCTTGTGCTGGCGGGTGTAAAGGTCTAAACAAAGTTTCAGGGGAAAAATCAGTTCTTGTGCAGTTTTTTGGCACGCATGATTTTGCTAG : GGTCAAGTTAAAGCAAGTTATCTCTTTCTTAAGAGGGCTTCTTTCTTCCTTTCACCTCAAGTGCAAAAAGCCAAAATTTATTCAAAGTTTGGAGGAAGCAAAAATGTGAGCCTTGTCGATCTGAATTCAATTTTAGTAGTTTTCCCTCTTTCAGGCCCTTTGCTGATTTTGTTGATCTTTCCCATTTTCTGACTGTCAATACTTGAATTGGGGGAAAAACTTGTAGAAATAATTGTCTCAATAAATAA</gDNA_template>
            <first_frame> S  Q  L  R  R  E  T  P  F  S  L  N  P  P  F  Y  R  T  L  E  T  Q  I  P  V  P  I  Q  L  K  I  Y  P  F  *  R  N  Q  R  E  K  S  N  *  F  G  F  V  H  L  F  V  Q  L  W  L  F  R  *  L  I  Q  L  F  R  P  M  M  I  R  M  L  S  S  C  W  K  R  R  N  E  I  N  R  W  M  E  R  M  T  I  E  R  E  L  L  L  *  D  M  S  H  C  A  M  C  T  P  L  L  P  L  T  W  A  L  V  G  R  K  K  L  K  L  L  A  K  S  S  H  I  W  R  P  K  I  T  T  S  I  R  *  P  I  T  F  L  Q  C  L  E  G  N  S  L  L  F  T  S  T  L  A  V  A  K  G  N  D  T  N  L  L  F  T  T  R  *  S  L  D  R  *  N  *  L  M  V  T  E  K  V  G  L  M  T  V  K  E  M  K  W  V  *  N  L  K  R  I  R  G  E  R  S  V  I  Q  T  H  F  L  R  R  *  N  *  G  I  S  P  M  E  I  E  K  T  R  E  E  T  M  K  W  F  *  I  I  S  R  S  E  K  W  A  I  R  T  K  F  L  T  R  K  N  *  P  I  S  S  M  E  T  *  K  M  R  V  K  T  R  R  S  L  *  R  V  G  I  S  R  I  R  M  *  E  I  *  S  *  F  L  T  L  S  D  *  P  I  L  P  R  E  T  E  *  T  R  G  K  L  R  T  E  K  R  K  W  L  L  R  I  R  R  R  W  K  I  *  K  *  W  I  F  A  S  R  V  S  G  M  T  T  E  N  M  M  E  Q  W  L  *  N  I  L  *  R  R  R  R  R  G  V  R  W  L  I  Q  S  W  K  K  I  W  G  *  K  L  M  *  L  V  C  W  M  S  L  V  R  E  E  L  E  I  M  L  V  K  I  K  S  T  P  I  M  V  A  I  P  K  I  L  T  Q  R  A  T  *  R  N  K  K  N  I  V  F  W  G  I  V  *  I  K  N  A  Q  G  Q  F  G  Q  R  N  G  F   : G  *  V  L  K  E  L  I  P  R  N  L  L  D  Y  N  V  R :   R  I  G  H  *  M  L  F  G  T  L  V  V  *  L  G  T  T  Q  R  L  D  D  I  M :   *  N  M  *  M  G  M  K  K  I  C  S  Y  Q  M  K  G  S  S  F  L  L  H  L  R  K  *  I  V  *  S  *  D  P  A  I  R  V  L  K  L  M  *  S  V  L  M  K  *  L  Y  *  L  L  V  *  L  I  V  K  L  L  S  P  E  I  L  Y  G  P  S  *  L  :  V  M  P  C  G  L  P  L  F  *  M  N  L  V  L  A  G  V  K  V  *  T  K  F  Q  G  K  N  Q  F  L  C  S  F  L  A  R  M  I  L  L   : G  S  S  *  S  K  L  S  L  S  *  E  G  F  F  L  P  F  T  S  S  A  K  S  Q  N  L  F  K  V  W  R  K  Q  K  C  E  P  C  R  S  E  F  N  F  S  S  F  P  S  F  R  P  F  A  D  F  V  D  L  S  H  F  L  T  V  N  T  *  I  G  G  K  T  C  R  N  N  C  L  N  K  * </first_frame>
            <second_frame>  L  S  C  G  G  K  R  H  S  P  L  I  R  R  S  I  E  P  *  K  P  K  F  Q  C  Q  F  S  *  K  S  I  L  F  D  G  I  K  E  K  N  Q  I  N  L  V  L  C  I  F  L  F  N  Y  G  F  S  V  N  *  F  N  S  F  A  Q  *  *  Y  E  C  *  A  V  V  G  R  G  G  T  K  S  T  G  G  W  R  G  *  R  S  R  E  S  Y  S  F  E  I  C  P  I  V  R  C  V  L  R  Y  F  P  L  R  G  R  *  W  V  E  K  S  *  S  C  S  Q  N  P  P  T  F  G  D  R  R  S  P  Q  A  F  A  N  P  S  H  F  F  N  V  W  K  G  T  P  Y  Y  S  L  L  H  S  P  S  Q  K  E  T  T  R  T  F  F  L  R  L  V  N  L  S  I  G  E  I  S  *  W  *  Q  R  K  W  G  *  *  R  *  R  K  *  S  G  C  E  I  *  R  E  S  E  E  K  G  A  L  F  K  P  I  F  S  A  D  E  I  R  E  F  L  Q  W  K  *  R  R  R  G  K  R  P  *  N  G  F  K  *  *  A  E  A  K  S  G  Q  F  E  P  S  S  S  P  E  K  I  S  Q  Y  L  Q  W  K  H  R  R  *  E  *  R  Q  G  E  A  Y  K  E  *  G  *  A  E  *  E  C  R  R  F  K  A  S  F  S  L  C  Q  I  S  Q  F  F  Q  G  K  Q  N  R  R  G  G  N  *  G  R  R  R  G  S  G  Y  *  E  *  G  E  G  G  K  F  R  S  S  G  F  L  H  R  E  *  A  G  *  P  R  R  I  *  W  S  S  G  C  E  T  Y  Y  E  E  G  E  E  E  E  *  G  G  *  F  R  A  G  K  K  F  G  G  R  S  *  C  N  *  S  V  G  *  V  L  F  E  R  N  S  K  *  C  W  *  K  *  N  R  H  Q  S  W  *  Q  F  Q  R  F  *  L  N  G  Q  H  E  G  T  K  R  T  L  Y  F  G  E  *  F  E  *  K  M  L  R  V  N  S  D  K  E  M  G  L  :  A  E  F  *  R  S  *  S  Q  E  I  Y  W  T  T  M  *   : G  V  L  A  I  R  C  C  L  V  H  W  S  Y  N  W  V  Q  L  R  D  W  T  T  S   : C  E  I  C  R  W  G  *  R  R  S  A  L  I  K  *  K  D  Q  V  F  C  Y  T  *  G  N  E  S  S  E  V  E  T  P  R  Y  E  S  *  N  *  C  N  R  C  *  *  N  D  C  I  S  C  *  F  S  *  L  *  S  S  *  A  R  R  Y  Y  M  G  Q  A  D  W :   S  C  H  V  A  C  H  C  F  R  *  I  L  C  W  R  V  *  R  S  K  Q  S  F  R  G  K  I  S  S  C  A  V  F  W  H  A  *  F  C  *  :  G  Q  V  K  A  S  Y  L  F  L  K  R  A  S  F  F  L  S  P  Q  V  Q  K  A  K  I  Y  S  K  F  G  G  S  K  N  V  S  L  V  D  L  N  S  I  L  V  V  F  P  L  S  G  P  L  L  I  L  L  I  F  P  I  F  *  L  S  I  L  E  L  G  E  K  L  V  E  I  I  V  S  I  N   </second_frame>
            <third_frame>   S  V  A  A  G  N  A  I  L  P  *  S  A  V  L  S  N  P  R  N  P  N  S  S  A  N  S  V  K  N  L  S  F  L  T  E  S  K  R  K  I  K  L  I  W  F  C  A  S  F  C  S  I  M  A  F  P  L  T  D  S  T  L  S  P  N  D  D  T  N  A  K  Q  L  L  E  E  E  E  R  N  Q  Q  V  D  G  E  D  D  D  R  E  R  V  T  P  L  R  Y  V  P  L  C  D  V  Y  S  A  T  S  P  Y  V  G  A  S  G  S  K  K  V  K  A  A  R  K  I  L  P  H  L  E  T  E  D  H  H  K  H  S  L  T  H  H  I  S  S  M  S  G  R  E  L  P  I  I  H  F  Y  T  R  R  R  K  R  K  R  H  E  P  S  F  Y  D  S  L  I  S  R  S  V  K  L  A  N  G  D  R  E  S  G  V  D  D  G  E  G  N  E  V  G  V  K  F  K  E  N  Q  R  R  K  E  R  Y  S  N  P  F  S  P  Q  M  K  L  G  N  F  S  N  G  N  R  E  D  E  G  R  D  H  E  M  V  L  N  N  K  Q  K  R  K  V  G  N  S  N  Q  V  P  H  P  K  K  L  A  N  I  F  N  G  N  I  E  D  E  S  E  D  K  E  K  L  I  K  S  R  D  K  Q  N  K  N  V  G  D  L  K  L  V  S  H  S  V  R  L  A  N  S  S  K  G  N  R  I  D  E  G  E  T  E  D  G  E  E  E  V  V  I  K  N  K  E  K  V  E  N  L  E  V  V  D  F  C  I  E  S  E  R  D  D  H  G  E  Y  D  G  A  V  V  V  K  H  I  M  K  K  E  K  K  R  S  K  V  V  N  S  E  L  E  K  N  L  G  V  E  A  N  V  I  S  L  L  D  E  S  C  S  R  G  T  R  N  N  A  G  K  N  K  I  D  T  N  H  G  S  N  S  K  D  F  N  S  T  G  N  M  K  E  Q  K  E  H  C  I  L  G  N  S  L  N  K  K  C  S  G  S  I  R  T  K  K  W  V  W :   L  S  F  E  G  V  D  P  K  K  F  I  G  L  Q  C  K  :  A  Y  W  P  L  D  A  V  W  Y  T  G  R  I  T  G  Y  N  S  E  T  G  R  H  H  :  V  K  Y  V  D  G  D  E  E  D  L  L  L  S  N  E  R  I  K  F  S  V  T  L  E  E  M  N  R  L  K  L  R  P  R  D  T  S  P  E  T  D  V  I  G  V  D  E  M  I  V  L  A  A  S  L  A  D  C  E  A  L  E  P  G  D  I  I  W  A  K  L  T   : G  H  A  M  W  P  A  I  V  L  D  E  S  C  A  G  G  C  K  G  L  N  K  V  S  G  E  K  S  V  L  V  Q  F  F  G  T  H  D  F  A  R :   V  K  L  K  Q  V  I  S  F  L  R  G  L  L  S  S  F  H  L  K  C  K  K  P  K  F  I  Q  S  L  E  E  A  K  M  *  A  L  S  I  *  I  Q  F  *  *  F  S  L  F  Q  A  L  C  *  F  C  *  S  F  P  F  S  D  C  Q  Y  L  N  W  G  K  N  L  *  K  *  L  S  Q  *  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0059I05.3" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76788" stop="78112"/>
                    <exon start="78196" stop="78247"/>
                    <exon start="78334" stop="78408"/>
                    <exon start="78503" stop="78722"/>
                    <exon start="78975" stop="79098"/>
                    <exon start="79212" stop="79320"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1902</number_coding_nucleotides>
                  <number_encoded_amino_acids>634</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SAVLSNPRNPNSSANSVKNLSFLTESKRKIKLIWFCASFCSIMAFPLTDSTLSPNDDTNAKQLLEEEERNQQVDGEDDDRERVTPLRYVPLCDVYSATSPYVGASGSKKVKAARKILPHLETEDHHKHSLTHHISSMSGRELPIIHFYTRRRKRKRHEPSFYDSLISRSVKLANGDRESGVDDGEGNEVGVKFKENQRRKERYSNPFSPQMKLGNFSNGNREDEGRDHEMVLNNKQKRKVGNSNQVPHPKKLANIFNGNIEDESEDKEKLIKSRDKQNKNVGDLKLVSHSVRLANSSKGNRIDEGETEDGEEEVVIKNKEKVENLEVVDFCIESERDDHGEYDGAVVVKHIMKKEKKRSKVVNSELEKNLGVEANVISLLDESCSRGTRNNAGKNKIDTNHGSNSKDFNSTGNMKEQKEHCILGNSLNKKCSGSIRTKKWVWLSFEGVDPKKFIGLQCKAYWPLDAVWYTGRITGYNSETGRHHVKYVDGDEEDLLLSNERIKFSVTLEEMNRLKLRPRDTSPETDVIGVDEMIVLAASLADCEALEPGDIIWAKLTGHAMWPAIVLDESCAGGCKGLNKVSGEKSVLVQFFGTHDFARVKLKQVISFLRGLLSSFHLKCKKPKFIQSLEEAKM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="81196" PGL_stop="91075"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="81196" e_stop="81262"/>
            <exon e_start="81478" e_stop="81570"/>
            <exon e_start="81656" e_stop="81753"/>
            <exon e_start="88698" e_stop="88868"/>
            <exon e_start="90685" e_stop="90822"/>
            <exon e_start="91031" e_stop="91075"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.613" acc_prob="0.929" e_score="0.985"/>
          <exon-intron don_prob="0.969" acc_prob="0.738" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.779" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.859" e_score="0.993"/>
          <exon-only e_score="0.978"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="81196" e_stop="81262" e_length="67"/>
          </exon>
          <intron i_serial="1" don_prob="0.613" acc_prob="0.929">
            <gDNA_intron_boundary i_start="81263" i_stop="81477" i_length="215"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="81478" e_stop="81570" e_length="93"/>
          </exon>
          <intron i_serial="2" don_prob="0.969" acc_prob="0.738">
            <gDNA_intron_boundary i_start="81571" i_stop="81655" i_length="85"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="81656" e_stop="81753" e_length="98"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="0.964">
            <gDNA_intron_boundary i_start="81754" i_stop="88697" i_length="6944"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="88698" e_stop="88868" e_length="171"/>
          </exon>
          <intron i_serial="4" don_prob="0.992" acc_prob="0.779">
            <gDNA_intron_boundary i_start="88869" i_stop="90684" i_length="1816"/>
          </intron>
          <exon e_serial="5" e_score="0.993">
            <gDNA_exon_boundary e_start="90685" e_stop="90822" e_length="138"/>
          </exon>
          <intron i_serial="5" don_prob="0.965" acc_prob="0.859">
            <gDNA_intron_boundary i_start="90823" i_stop="91030" i_length="208"/>
          </intron>
          <exon e_serial="6" e_score="0.978">
            <gDNA_exon_boundary e_start="91031" e_stop="91075" e_length="45"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81196" stop="81262"/>
              <exon start="81478" stop="81570"/>
              <exon start="81656" stop="81753"/>
              <exon start="88698" stop="88868"/>
              <exon start="90685" stop="90822"/>
              <exon start="91031" stop="91075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U599958" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGGAAAAAGCTTGAAGAAGTCAGAAGTTGCCCACTTGAATTGGGGGACTTGAAAATAGTTAGCCTTG : GAAAAATAGTAGAAGATTCGGAGCTCTTTCGAGATGAGGAATTTATCTGGCCAGAAGGTTATACTGCTGTGAGGAAGTTGCCATCAGTAACAG : ATCCCAGTGTACGTGTATCATATAAGATGGAGGTACTGAGAGATCCTGATTTCCGGACACGACCTTTATTTAGAGTTACATCGGATAGTCGAGAACAG : TTTAAGGGATCTTCACCATCTGCTTGCTGGAATAAAGTTTACAAACAGATGAGGAAGACACAAGTTGACAATTTTGATGAATCAATATCTAGCCGTAAAAGTGAAAGGACCTTTGGATCAGGTTCTCATATGTTTGGCTTTTCTCATCCTGAAATTTCGAAACTTATAAAG : GAGTTATCAAAGTCCAAGATTCTTGCAAAATCCTTGAAATTGGCGTCTTCAAAAAATCAAGACTTGCCGGCTGGTTATAGGTCTGTCCGTGTTAAATGGAAAGATCTGGACAAATGCAACGTTTGCCATATGGATGAG : GAGTATGAGAATAATTTGTTTTTGCAGTGTGACAAATGCCGAATG</gDNA_template>
            <first_frame> R  K  K  L  E  E  V  R  S  C  P  L  E  L  G  D  L  K  I  V  S  L   : G  K  I  V  E  D  S  E  L  F  R  D  E  E  F  I  W  P  E  G  Y  T  A  V  R  K  L  P  S  V  T   : D  P  S  V  R  V  S  Y  K  M  E  V  L  R  D  P  D  F  R  T  R  P  L  F  R  V  T  S  D  S  R  E  Q  :  F  K  G  S  S  P  S  A  C  W  N  K  V  Y  K  Q  M  R  K  T  Q  V  D  N  F  D  E  S  I  S  S  R  K  S  E  R  T  F  G  S  G  S  H  M  F  G  F  S  H  P  E  I  S  K  L  I  K  :  E  L  S  K  S  K  I  L  A  K  S  L  K  L  A  S  S  K  N  Q  D  L  P  A  G  Y  R  S  V  R  V  K  W  K  D  L  D  K  C  N  V  C  H  M  D  E  :  E  Y  E  N  N  L  F  L  Q  C  D  K  C  R  M </first_frame>
            <second_frame>  G  K  S  L  K  K  S  E  V  A  H  L  N  W  G  T  *  K  *  L  A  L  :  E  K  *  *  K  I  R  S  S  F  E  M  R  N  L  S  G  Q  K  V  I  L  L  *  G  S  C  H  Q  *  Q  :  I  P  V  Y  V  Y  H  I  R  W  R  Y  *  E  I  L  I  S  G  H  D  L  Y  L  E  L  H  R  I  V  E  N  S :   L  R  D  L  H  H  L  L  A  G  I  K  F  T  N  R  *  G  R  H  K  L  T  I  L  M  N  Q  Y  L  A  V  K  V  K  G  P  L  D  Q  V  L  I  C  L  A  F  L  I  L  K  F  R  N  L  *  R :   S  Y  Q  S  P  R  F  L  Q  N  P  *  N  W  R  L  Q  K  I  K  T  C  R  L  V  I  G  L  S  V  L  N  G  K  I  W  T  N  A  T  F  A  I  W  M  R :   S  M  R  I  I  C  F  C  S  V  T  N  A  E   </second_frame>
            <third_frame>   E  K  A  *  R  S  Q  K  L  P  T  *  I  G  G  L  E  N  S  *  P  W :   K  N  S  R  R  F  G  A  L  S  R  *  G  I  Y  L  A  R  R  L  Y  C  C  E  E  V  A  I  S  N  R :   S  Q  C  T  C  I  I  *  D  G  G  T  E  R  S  *  F  P  D  T  T  F  I  *  S  Y  I  G  *  S  R  T   : V  *  G  I  F  T  I  C  L  L  E  *  S  L  Q  T  D  E  E  D  T  S  *  Q  F  *  *  I  N  I  *  P  *  K  *  K  D  L  W  I  R  F  S  Y  V  W  L  F  S  S  *  N  F  E  T  Y  K   : G  V  I  K  V  Q  D  S  C  K  I  L  E  I  G  V  F  K  K  S  R  L  A  G  W  L  *  V  C  P  C  *  M  E  R  S  G  Q  M  Q  R  L  P  Y  G  *   : G  V  *  E  *  F  V  F  A  V  *  Q  M  P  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0059I05.3" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81196" stop="81262"/>
                    <exon start="81478" stop="81570"/>
                    <exon start="81656" stop="81753"/>
                    <exon start="88698" stop="88868"/>
                    <exon start="90685" stop="90822"/>
                    <exon start="91031" stop="91075"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>612</number_coding_nucleotides>
                  <number_encoded_amino_acids>204</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKKLEEVRSCPLELGDLKIVSLGKIVEDSELFRDEEFIWPEGYTAVRKLPSVTDPSVRVSYKMEVLRDPDFRTRPLFRVTSDSREQFKGSSPSACWNKVYKQMRKTQVDNFDESISSRKSERTFGSGSHMFGFSHPEISKLIKELSKSKILAKSLKLASSKNQDLPAGYRSVRVKWKDLDKCNVCHMDEEYENNLFLQCDKCRM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="118290" PGL_stop="118625"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="118290" e_stop="118389"/>
            <exon e_start="118504" e_stop="118625"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.994" e_score="0.990"/>
          <exon-only e_score="0.959"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="118290" e_stop="118389" e_length="100"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.994">
            <gDNA_intron_boundary i_start="118390" i_stop="118503" i_length="114"/>
          </intron>
          <exon e_serial="2" e_score="0.959">
            <gDNA_exon_boundary e_start="118504" e_stop="118625" e_length="122"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118290" stop="118389"/>
              <exon start="118504" stop="118625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U600408" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCGAACAGTTCGATTTCAAAATGTACAAATGGAAGATGTTTCAAATCCAATCATTATAGATCAATTCTACTGCGACTCACAAAAACCTTGTCAAAATCAG : ACATCTGCAGTTGAGATAAGTGAAGTACTCTATCGTAACGTTAGTGGAACAACAAAGAGCAAAAAGGCAATGAAATTCGCGTGTAGTGACACTGTGCCTTGTAGCCATATTACTCTGGACAA</gDNA_template>
            <first_frame> S  N  S  S  I  S  K  C  T  N  G  R  C  F  K  S  N  H  Y  R  S  I  L  L  R  L  T  K  T  L  S  K  S   : D  I  C  S  *  D  K  *  S  T  L  S  *  R  *  W  N  N  K  E  Q  K  G  N  E  I  R  V  *  *  H  C  A  L  *  P  Y  Y  S  G  Q </first_frame>
            <second_frame>  R  T  V  R  F  Q  N  V  Q  M  E  D  V  S  N  P  I  I  I  D  Q  F  Y  C  D  S  Q  K  P  C  Q  N  Q  :  T  S  A  V  E  I  S  E  V  L  Y  R  N  V  S  G  T  T  K  S  K  K  A  M  K  F  A  C  S  D  T  V  P  C  S  H  I  T  L  D   </second_frame>
            <third_frame>   E  Q  F  D  F  K  M  Y  K  W  K  M  F  Q  I  Q  S  L  *  I  N  S  T  A  T  H  K  N  L  V  K  I  R :   H  L  Q  L  R  *  V  K  Y  S  I  V  T  L  V  E  Q  Q  R  A  K  R  Q  *  N  S  R  V  V  T  L  C  L  V  A  I  L  L  W  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0059I05.3" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="118291" stop="118389"/>
                    <exon start="118504" stop="118623"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RTVRFQNVQMEDVSNPIIIDQFYCDSQKPCQNQTSAVEISEVLYRNVSGTTKSKKAMKFACSDTVPCSHITLD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="119524" PGL_stop="125460"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="119524" e_stop="119704"/>
            <exon e_start="119800" e_stop="119882"/>
            <exon e_start="121394" e_stop="121510"/>
            <exon e_start="121599" e_stop="121702"/>
            <exon e_start="122261" e_stop="122327"/>
            <exon e_start="123523" e_stop="123656"/>
            <exon e_start="123772" e_stop="123820"/>
            <exon e_start="124256" e_stop="124327"/>
            <exon e_start="124413" e_stop="124514"/>
            <exon e_start="124595" e_stop="124662"/>
            <exon e_start="124851" e_stop="125003"/>
            <exon e_start="125112" e_stop="125460"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.964" acc_prob="0.975" e_score="0.994"/>
          <exon-intron don_prob="1.000" acc_prob="0.610" e_score="1.000"/>
          <exon-intron don_prob="0.838" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.949" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.938" acc_prob="0.780" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.869" e_score="0.986"/>
          <exon-intron don_prob="0.999" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.899" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="119524" e_stop="119704" e_length="181"/>
          </exon>
          <intron i_serial="1" don_prob="0.964" acc_prob="0.975">
            <gDNA_intron_boundary i_start="119705" i_stop="119799" i_length="95"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="119800" e_stop="119882" e_length="83"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.610">
            <gDNA_intron_boundary i_start="119883" i_stop="121393" i_length="1511"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="121394" e_stop="121510" e_length="117"/>
          </exon>
          <intron i_serial="3" don_prob="0.838" acc_prob="0.997">
            <gDNA_intron_boundary i_start="121511" i_stop="121598" i_length="88"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="121599" e_stop="121702" e_length="104"/>
          </exon>
          <intron i_serial="4" don_prob="0.962" acc_prob="0.997">
            <gDNA_intron_boundary i_start="121703" i_stop="122260" i_length="558"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="122261" e_stop="122327" e_length="67"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="0.990">
            <gDNA_intron_boundary i_start="122328" i_stop="123522" i_length="1195"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="123523" e_stop="123656" e_length="134"/>
          </exon>
          <intron i_serial="6" don_prob="0.949" acc_prob="0.999">
            <gDNA_intron_boundary i_start="123657" i_stop="123771" i_length="115"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="123772" e_stop="123820" e_length="49"/>
          </exon>
          <intron i_serial="7" don_prob="0.938" acc_prob="0.780">
            <gDNA_intron_boundary i_start="123821" i_stop="124255" i_length="435"/>
          </intron>
          <exon e_serial="8" e_score="0.986">
            <gDNA_exon_boundary e_start="124256" e_stop="124327" e_length="72"/>
          </exon>
          <intron i_serial="8" don_prob="0.998" acc_prob="0.869">
            <gDNA_intron_boundary i_start="124328" i_stop="124412" i_length="85"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="124413" e_stop="124514" e_length="102"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="0.993">
            <gDNA_intron_boundary i_start="124515" i_stop="124594" i_length="80"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="124595" e_stop="124662" e_length="68"/>
          </exon>
          <intron i_serial="10" don_prob="0.987" acc_prob="0.999">
            <gDNA_intron_boundary i_start="124663" i_stop="124850" i_length="188"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="124851" e_stop="125003" e_length="153"/>
          </exon>
          <intron i_serial="11" don_prob="0.899" acc_prob="1.000">
            <gDNA_intron_boundary i_start="125004" i_stop="125111" i_length="108"/>
          </intron>
          <exon e_serial="12" e_score="0.991">
            <gDNA_exon_boundary e_start="125112" e_stop="125460" e_length="349"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119524" stop="119704"/>
              <exon start="119800" stop="119882"/>
              <exon start="121394" stop="121510"/>
              <exon start="121599" stop="121702"/>
              <exon start="122261" stop="122327"/>
              <exon start="123523" stop="123656"/>
              <exon start="123772" stop="123820"/>
              <exon start="124256" stop="124327"/>
              <exon start="124413" stop="124514"/>
              <exon start="124595" stop="124662"/>
              <exon start="124851" stop="125003"/>
              <exon start="125112" stop="125460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U579206" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTATTGCAAGGAGTGGGCTGGCCCATTAATAGTAATTGCCGCTTTCGTCTCGTCTCCTCATTTTGTTCCTCCAGCAATTAGGGTTTTGGATTTTGGATTTGCTTCTTGTGGAATTGCTCCGAAGTCGAGAAGCTTCGGATTCAGTCAATTTTCTGCTCAATTTCTATCATCATGGCAAATC : CTACAGGACGGTCGTTTTTGCAAGTGGCAGCTACAGAGGAGGCTGTTGCGCCACCACTCAGAGTTGTTCAGATTGAAGGACTG : GTTATTTTGAAAATAATCAAGCATTGCCAAGAGTTTTCACCGGCTTTGGTCACTGGACAACTCCTTGGATTGGATGTTGGAAGTGTTCTTGAAGTCACTAACTGTTTTCCTTTTCCG : GTTCGCGAGGAAGATGAGGAGATTGAAGCCGAGGGTGCTAATTATCAACTTGAAATGATGCGATGCCTGAGGGAGGTTAATGTTGACAACAACACCGTTGGTTG : GTATCAATCAACTTTGTTTGGTTCATATCAGACAGTGGAACTGATAGAGACCTTCATGAATTACCAG : GAGAATATAAAACGTTGTGTCTGCATAATCTATGATCCTTCTAGATCCAACCAAGGTGTCTTAGCTTTGAAAGCCTTGAAGCTTTCTGATTCTTTCATGGAACTCTACAAGAGTAACAACTTTACTGGAGAGAA : GCTGAGAGAAAAGAATCTTTCATGGGTTGACATCTTTGAAGAGATACCA : ATAAAAGTTTCAAATTCTGCACTCATTAGTGCCTTTATGACTGAATTGGAACCCGATACACCTGTAACTCAG : TGTGATTATGAACGCTTACAATTATCAACCAATCCATATTTGGAGAGGAATGTGGAATTTTTGATTGAATGCATGGATGACTTGTCGATGGAGCAGCAAAAG : TTCCAATTCTATTACCGGAATCTTTCTCGTCAACAAGCTCAGCAGCAAGCTTGGCTTCAGAAGAGGAG : GACTGAGAACATGGCACGTAAAGCTGCAGGAGAAGAGCTACTGCCAGAAGAGGATCCCTCTAATCCTGTCTTTAAGCCACTCCCAGAGCCCTCACGGTTGGATAGCTTTCTCATAACTAATCAAATTTCAAATTACTGCAACCAGATTAATGG : AGTTGCGGGACAAAGCCTCAGTAGACTACATCTGATGAAGGCTTTGCACGAGAACTGAGCAAGTTTTGCGTTGGCAATTTGTACCTTAGATTTTTGTGCCTTTTTTTTCAACTTTACTGATGTGAGAGGGAAAGAGAATGACCTTTATCTCTGTTAGGTGTCTTTAGTTTTTGCTTTTACATTCTTCTATGATTGGCAATCAAGTGTAGCCTACCTTGAATCATATATGTGAAGATTTACATCTAGTCCACAGAGAAGGAATAGGGATCTATGTATCGATGACCTTATTGTTTTTTGATCGATTGTGTGGAAATGGAAGATTAAAAATCTCTCAATTACCCTCATTAAT</gDNA_template>
            <first_frame> V  L  Q  G  V  G  W  P  I  N  S  N  C  R  F  R  L  V  S  S  F  C  S  S  S  N  *  G  F  G  F  W  I  C  F  L  W  N  C  S  E  V  E  K  L  R  I  Q  S  I  F  C  S  I  S  I  I  M  A  N   : P  T  G  R  S  F  L  Q  V  A  A  T  E  E  A  V  A  P  P  L  R  V  V  Q  I  E  G  L  :  V  I  L  K  I  I  K  H  C  Q  E  F  S  P  A  L  V  T  G  Q  L  L  G  L  D  V  G  S  V  L  E  V  T  N  C  F  P  F  P  :  V  R  E  E  D  E  E  I  E  A  E  G  A  N  Y  Q  L  E  M  M  R  C  L  R  E  V  N  V  D  N  N  T  V  G  W :   Y  Q  S  T  L  F  G  S  Y  Q  T  V  E  L  I  E  T  F  M  N  Y  Q  :  E  N  I  K  R  C  V  C  I  I  Y  D  P  S  R  S  N  Q  G  V  L  A  L  K  A  L  K  L  S  D  S  F  M  E  L  Y  K  S  N  N  F  T  G  E  K :   L  R  E  K  N  L  S  W  V  D  I  F  E  E  I  P  :  I  K  V  S  N  S  A  L  I  S  A  F  M  T  E  L  E  P  D  T  P  V  T  Q  :  C  D  Y  E  R  L  Q  L  S  T  N  P  Y  L  E  R  N  V  E  F  L  I  E  C  M  D  D  L  S  M  E  Q  Q  K  :  F  Q  F  Y  Y  R  N  L  S  R  Q  Q  A  Q  Q  Q  A  W  L  Q  K  R  R :   T  E  N  M  A  R  K  A  A  G  E  E  L  L  P  E  E  D  P  S  N  P  V  F  K  P  L  P  E  P  S  R  L  D  S  F  L  I  T  N  Q  I  S  N  Y  C  N  Q  I  N  G :   V  A  G  Q  S  L  S  R  L  H  L  M  K  A  L  H  E  N  *  A  S  F  A  L  A  I  C  T  L  D  F  C  A  F  F  F  N  F  T  D  V  R  G  K  E  N  D  L  Y  L  C  *  V  S  L  V  F  A  F  T  F  F  Y  D  W  Q  S  S  V  A  Y  L  E  S  Y  M  *  R  F  T  S  S  P  Q  R  R  N  R  D  L  C  I  D  D  L  I  V  F  *  S  I  V  W  K  W  K  I  K  N  L  S  I  T  L  I  N </first_frame>
            <second_frame>  Y  C  K  E  W  A  G  P  L  I  V  I  A  A  F  V  S  S  P  H  F  V  P  P  A  I  R  V  L  D  F  G  F  A  S  C  G  I  A  P  K  S  R  S  F  G  F  S  Q  F  S  A  Q  F  L  S  S  W  Q  I  :  L  Q  D  G  R  F  C  K  W  Q  L  Q  R  R  L  L  R  H  H  S  E  L  F  R  L  K  D  W :   L  F  *  K  *  S  S  I  A  K  S  F  H  R  L  W  S  L  D  N  S  L  D  W  M  L  E  V  F  L  K  S  L  T  V  F  L  F  R :   F  A  R  K  M  R  R  L  K  P  R  V  L  I  I  N  L  K  *  C  D  A  *  G  R  L  M  L  T  T  T  P  L  V   : G  I  N  Q  L  C  L  V  H  I  R  Q  W  N  *  *  R  P  S  *  I  T  R :   R  I  *  N  V  V  S  A  *  S  M  I  L  L  D  P  T  K  V  S  *  L  *  K  P  *  S  F  L  I  L  S  W  N  S  T  R  V  T  T  L  L  E  R   : S  *  E  K  R  I  F  H  G  L  T  S  L  K  R  Y  Q :   *  K  F  Q  I  L  H  S  L  V  P  L  *  L  N  W  N  P  I  H  L  *  L  S :   V  I  M  N  A  Y  N  Y  Q  P  I  H  I  W  R  G  M  W  N  F  *  L  N  A  W  M  T  C  R  W  S  S  K  S :   S  N  S  I  T  G  I  F  L  V  N  K  L  S  S  K  L  G  F  R  R  G   : G  L  R  T  W  H  V  K  L  Q  E  K  S  Y  C  Q  K  R  I  P  L  I  L  S  L  S  H  S  Q  S  P  H  G  W  I  A  F  S  *  L  I  K  F  Q  I  T  A  T  R  L  M   : E  L  R  D  K  A  S  V  D  Y  I  *  *  R  L  C  T  R  T  E  Q  V  L  R  W  Q  F  V  P  *  I  F  V  P  F  F  S  T  L  L  M  *  E  G  K  R  M  T  F  I  S  V  R  C  L  *  F  L  L  L  H  S  S  M  I  G  N  Q  V  *  P  T  L  N  H  I  C  E  D  L  H  L  V  H  R  E  G  I  G  I  Y  V  S  M  T  L  L  F  F  D  R  L  C  G  N  G  R  L  K  I  S  Q  L  P  S  L   </second_frame>
            <third_frame>   I  A  R  S  G  L  A  H  *  *  *  L  P  L  S  S  R  L  L  I  L  F  L  Q  Q  L  G  F  W  I  L  D  L  L  L  V  E  L  L  R  S  R  E  A  S  D  S  V  N  F  L  L  N  F  Y  H  H  G  K  S :   Y  R  T  V  V  F  A  S  G  S  Y  R  G  G  C  C  A  T  T  Q  S  C  S  D  *  R  T   : G  Y  F  E  N  N  Q  A  L  P  R  V  F  T  G  F  G  H  W  T  T  P  W  I  G  C  W  K  C  S  *  S  H  *  L  F  S  F  S   : G  S  R  G  R  *  G  D  *  S  R  G  C  *  L  S  T  *  N  D  A  M  P  E  G  G  *  C  *  Q  Q  H  R  W  L  :  V  S  I  N  F  V  W  F  I  S  D  S  G  T  D  R  D  L  H  E  L  P   : G  E  Y  K  T  L  C  L  H  N  L  *  S  F  *  I  Q  P  R  C  L  S  F  E  S  L  E  A  F  *  F  F  H  G  T  L  Q  E  *  Q  L  Y  W  R  E  :  A  E  R  K  E  S  F  M  G  *  H  L  *  R  D  T   : N  K  S  F  K  F  C  T  H  *  C  L  Y  D  *  I  G  T  R  Y  T  C  N  S   : V  *  L  *  T  L  T  I  I  N  Q  S  I  F  G  E  E  C  G  I  F  D  *  M  H  G  *  L  V  D  G  A  A  K   : V  P  I  L  L  P  E  S  F  S  S  T  S  S  A  A  S  L  A  S  E  E  E  :  D  *  E  H  G  T  *  S  C  R  R  R  A  T  A  R  R  G  S  L  *  S  C  L  *  A  T  P  R  A  L  T  V  G  *  L  S  H  N  *  S  N  F  K  L  L  Q  P  D  *  W  :  S  C  G  T  K  P  Q  *  T  T  S  D  E  G  F  A  R  E  L  S  K  F  C  V  G  N  L  Y  L  R  F  L  C  L  F  F  Q  L  Y  *  C  E  R  E  R  E  *  P  L  S  L  L  G  V  F  S  F  C  F  Y  I  L  L  *  L  A  I  K  C  S  L  P  *  I  I  Y  V  K  I  Y  I  *  S  T  E  K  E  *  G  S  M  Y  R  *  P  Y  C  F  L  I  D  C  V  E  M  E  D  *  K  S  L  N  Y  P  H  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0059I05.3" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="119605" stop="119704"/>
                    <exon start="119800" stop="119882"/>
                    <exon start="121394" stop="121510"/>
                    <exon start="121599" stop="121702"/>
                    <exon start="122261" stop="122327"/>
                    <exon start="123523" stop="123656"/>
                    <exon start="123772" stop="123820"/>
                    <exon start="124256" stop="124327"/>
                    <exon start="124413" stop="124514"/>
                    <exon start="124595" stop="124662"/>
                    <exon start="124851" stop="125003"/>
                    <exon start="125112" stop="125169"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1104</number_coding_nucleotides>
                  <number_encoded_amino_acids>368</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFGFWICFLWNCSEVEKLRIQSIFCSISIIMANPTGRSFLQVAATEEAVAPPLRVVQIEGLVILKIIKHCQEFSPALVTGQLLGLDVGSVLEVTNCFPFPVREEDEEIEAEGANYQLEMMRCLREVNVDNNTVGWYQSTLFGSYQTVELIETFMNYQENIKRCVCIIYDPSRSNQGVLALKALKLSDSFMELYKSNNFTGEKLREKNLSWVDIFEEIPIKVSNSALISAFMTELEPDTPVTQCDYERLQLSTNPYLERNVEFLIECMDDLSMEQQKFQFYYRNLSRQQAQQQAWLQKRRTENMARKAAGEELLPEEDPSNPVFKPLPEPSRLDSFLITNQISNYCNQINGVAGQSLSRLHLMKALHEN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="126513" PGL_stop="126129"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="126513" e_stop="126129"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="126513" e_stop="126129" e_length="385"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126513" stop="126129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U599077" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGATACTCAATGATCATGTGAGAGTTTTGCTTGAGCAAGGCAATGTGTTGGAGTGTGTTGATCCAACTATGAATACTTATCCTGAAGAGGAAGTTTTGCCTGTTCTGAAGTTGGCATTGGTGTGCACTTCTCAAATACCATCAAGTAGGCCTTCAATGGCTGAAGTGGTTCAAATCTTGCAGGTCATCAAAACACCTGTTCCTCAAAGAATGGAAGTATACTAAAACTTGTTACAAACTTGATGAATTTCCCTTTCTCTTTGACTTTCTATCATATCCTATTGTTGTTATCTTAACCTCCTAATCTGATGTTTTTGGACTAGATAGTGATAGAGAGAGTTTTGTACTTCTCTGTCATTTGATGAAATATATGAGAGGTTGGTTC</gDNA_template>
            <first_frame> L  I  L  N  D  H  V  R  V  L  L  E  Q  G  N  V  L  E  C  V  D  P  T  M  N  T  Y  P  E  E  E  V  L  P  V  L  K  L  A  L  V  C  T  S  Q  I  P  S  S  R  P  S  M  A  E  V  V  Q  I  L  Q  V  I  K  T  P  V  P  Q  R  M  E  V  Y  *  N  L  L  Q  T  *  *  I  S  L  S  L  *  L  S  I  I  S  Y  C  C  Y  L  N  L  L  I  *  C  F  W  T  R  *  *  *  R  E  F  C  T  S  L  S  F  D  E  I  Y  E  R  L  V  </first_frame>
            <second_frame>  *  Y  S  M  I  M  *  E  F  C  L  S  K  A  M  C  W  S  V  L  I  Q  L  *  I  L  I  L  K  R  K  F  C  L  F  *  S  W  H  W  C  A  L  L  K  Y  H  Q  V  G  L  Q  W  L  K  W  F  K  S  C  R  S  S  K  H  L  F  L  K  E  W  K  Y  T  K  T  C  Y  K  L  D  E  F  P  F  L  F  D  F  L  S  Y  P  I  V  V  I  L  T  S  *  S  D  V  F  G  L  D  S  D  R  E  S  F  V  L  L  C  H  L  M  K  Y  M  R  G  W  F </second_frame>
            <third_frame>   D  T  Q  *  S  C  E  S  F  A  *  A  R  Q  C  V  G  V  C  *  S  N  Y  E  Y  L  S  *  R  G  S  F  A  C  S  E  V  G  I  G  V  H  F  S  N  T  I  K  *  A  F  N  G  *  S  G  S  N  L  A  G  H  Q  N  T  C  S  S  K  N  G  S  I  L  K  L  V  T  N  L  M  N  F  P  F  S  L  T  F  Y  H  I  L  L  L  L  S  *  P  P  N  L  M  F  L  D  *  I  V  I  E  R  V  L  Y  F  S  V  I  *  *  N  I  *  E  V  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0059I05.3" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="126513" stop="126289"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LILNDHVRVLLEQGNVLECVDPTMNTYPEEEVLPVLKLALVCTSQIPSSRPSMAEVVQILQVIKTPVPQRMEVY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0059I05.3" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="126404" stop="126210"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SWHWCALLKYHQVGLQWLKWFKSCRSSKHLFLKEWKYTKTCYKLDEFPFLFDFLSYPIVVILTS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 35 chains have been computed
$ 
$ memory statistics:
$ 43456 bytes spliced alignments in total
$ 20 spliced alignments have been stored
$ 2172 bytes was the average size of a spliced alignment
$ 26824 bytes predicted gene locations in total
$ 17 predicted gene locations have been stored
$ 1577 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 37 backtrace matrices have been allocated
$ 
$ date finished: 2009-11-24 17:17:23
-->
