<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-19 08:28:30"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09HBa0074C08-dkn8r/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C09HBa0074C08-dkn8r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0074C08-dkn8r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E367110" ref_strand="+" ref_description="SGN-E367110 [cLPT-5-O20]">
      <seq>tcatccacaatacacacgcaaccaccacccacacgcacaagcaacccgaaccaccccatacccacaacatctccaacccgatccgttttgggtccttaccggccacccccgaatcaccaccgcccgtgccaccccccaatactcatcccatgttaacccgtggcaaagccggtatctttaaacccaaaacctttcaggctaccatactaccaaatacaccccttcccgatagtgaaccaacaacctactctgttgcctcaaaaaatgcttattggcgtcatgctatggatgacgagtttaaggctttgactgatcaggaaacttgggttcttgtacctaagccccatgggcggcacccagtgggctgtaaatgggtgtacaaaattaaacacaatgcggatggcagtatttccaggtacaaggctcgtttggttgctaaaggctacaatcaggagtatggtcttgattactccgagacattcagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0074C08-dkn8r/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0074C08.1" temp_strand="+" temp_description="C09HBa0074C08.1  AC234212.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0074C08 upload_account_name:spain (1 - 112940)">
        <position start="35135" stop="36220"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35435" g_stop="35920" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="486" r_length="486" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0074C08.1" gen_strand="+" ref_id="SGN-E367110" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0074C08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367110" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35435" e_stop="35920"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACCCACAATACACCCGCAACCACCACTGACACTCACAACCAACCCGAACCACCCCATACCCACAACATCTCCAGCCCGATCCATTTTGGGTCCTTCCGGGCCACCCCCAAATCACCACCACCCGTGCCACCCCCCACTACTCATCCCATGTTAACCCGTGTCAAAGCTGGTATCTTTAAACCCAAAACCTTTCAGGCTACCATACTACCAAATACACCCTTTCCCGATAGTGAACCAACAACCTACTCTGTTGCCTTAAAAAATGCTTATTGGTGTCAAGATATGGATGACGAGTTTAAGTCTTTGACTGATCAGAAAACTTGGGTTCTTGTACCTAAGCCCCATGGGCGGCACCCAGTGGGCTGTAAATGGATGTACAAAATTAAACACAATGCAGATGGCAGTATTTCCAGGTACAAGGCTCGTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGGCTTGATTACTCCGAGACATTCACTC</genome_strand>
        <mrna_strand>TCATCCACAATACACACGCAACCACCACCCACACGCACAAGCAACCCGAACCACCCCATACCCACAACATCTCCAACCCGATCCGTTTTGGGTCCTTACCGGCCACCCCCGAATCACCACCGCCCGTGCCACCCCCCAATACTCATCCCATGTTAACCCGTGGCAAAGCCGGTATCTTTAAACCCAAAACCTTTCAGGCTACCATACTACCAAATACACCCCTTCCCGATAGTGAACCAACAACCTACTCTGTTGCCTCAAAAAATGCTTATTGGCGTCATGCTATGGATGACGAGTTTAAGGCTTTGACTGATCAGGAAACTTGGGTTCTTGTACCTAAGCCCCATGGGCGGCACCCAGTGGGCTGTAAATGGGTGTACAAAATTAAACACAATGCGGATGGCAGTATTTCCAGGTACAAGGCTCGTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGTCTTGATTACTCCGAGACATTCAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0074C08-dkn8r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E245978" ref_strand="+" ref_description="SGN-E245978 [cLEF-51-O12]">
      <seq>gtttggttgctaaaggctacaatcaggagtatgggcttgattactccgagacattcagtcctgttattcggcaggaaaccattcgcctggtactgtcactcgccgtgcgcaacaattggctcatcaatcagttggatgtttccaatgcttttcttcatggcatgcttgatgaaacaatctacatgacgcaaccaccgggctatgttgatcctcgcttccctcaacatgtttgcaaactccagaagtctctgtatgggctcaagcaagccccccgtgcttggtacgcacgtctgaaaacgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0074C08-dkn8r/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0074C08.1" temp_strand="+" temp_description="C09HBa0074C08.1  AC234212.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0074C08 upload_account_name:spain (1 - 112940)">
        <position start="35561" stop="36461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35861" g_stop="36161" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0074C08.1" gen_strand="+" ref_id="SGN-E245978" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>301</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0074C08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245978" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35861" e_stop="36161"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGGCTTGATTACTCCGAGACATTCACTCCTGTTATTCGGTAGGAAACCATTCACGTGGTACTGTCACTCGCTGTGTGCAACAATTGGATCATCAATCAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGCTTGATGAAACTATCTACATGACGCAACCACCAGGCTATGTTGATCCCCGCTTCCCTCAACATGTTTGCAAACTCCAGAAGTCTCTGTATGGTCTCAAGCAAGCCCCCCGTGCTTGGTACACACGTCTGAAAACGTT</genome_strand>
        <mrna_strand>GTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGGCTTGATTACTCCGAGACATTCAGTCCTGTTATTCGGCAGGAAACCATTCGCCTGGTACTGTCACTCGCCGTGCGCAACAATTGGCTCATCAATCAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGCTTGATGAAACAATCTACATGACGCAACCACCGGGCTATGTTGATCCTCGCTTCCCTCAACATGTTTGCAAACTCCAGAAGTCTCTGTATGGGCTCAAGCAAGCCCCCCGTGCTTGGTACGCACGTCTGAAAACGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0074C08-dkn8r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E286708" ref_strand="+" ref_description="SGN-E286708 [cLES-14-D9]">
      <seq>tcgcgaggtccgtcatggtcacgacggaccgtcatggactccgtcgtcccatacttatgcaatttcttttgttgctcttcttcattaccctcaacggcaagtatggcggaccgtcataggcacaacggtccgtcgagggccttcgttccaaaacactttaactcttggaatatgggtactgggattacttctctgaacttcatgacgaacctgtaggacggaccgtcatagacacgatggaccgtcacaagcttcgtaaccccatacttggtcagacttccccatcttccttcagcagctgcactacgctgacacctacggaccgtcacaagcacgacggaccgtcataagctccgtaggtggtctcttctgcatttcttcgctcaaaatctccgcattcagctttggacagatttcctgcaaaataaaaagaaactaatatagaaattagcacaaaaaggattttagacacactaaacttaaggaaaaagtattaataataccatgaaaccacggtatatcacttggccacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0074C08-dkn8r/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0074C08.1" temp_strand="-" temp_description="C09HBa0074C08.1  AC234212.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0074C08 upload_account_name:spain (1 - 112940)">
        <position start="53470" stop="52346"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53170" g_stop="52638" g_length="533"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="534" r_length="534" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0074C08.1" gen_strand="-" ref_id="SGN-E286708" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0074C08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286708" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53170" e_stop="52638"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCGATGGACCGTCATGGTCAGAACGGACCGTCATGGACTCCATCGTCCCATACTTGTGCAATTTCTTCTACTGCT-TTCTTCATTTCCCTCGACGACAAGTATGACGGACCGTTATAGGCACAACGATCCGTCGAGGGTCTTCGTTCCAAAACACTTCAACTCTTGGAATCTGGCTACTGGGATCACTTCTCTGAACTTCAAGACGAACCTGCAGGACGGACCGTCATAGACACGATGGACCGTCACAAGCTTCGTAATCCCACACTTGGTCAGACTTCCCCATCTTCCTTCAGCAGCTGCACTACGCTGCCACCTACGGACCGTCCGAAGCACGACGGACCGTCATAAGCTGCGTAGGTGGTCTCTTCTGCATTTCTTCGCTCAAAATCTCCGCATTCACCTTTGGATAGATTTCCTGCAAAA-AAAGAGAAACTTATATAAAAATTAGCACAAAAAGGCTTTTGGACACACTAAACTTAAGGAAAAAGTATTAATAATACCGTGAAACCACGGTATATCACCTATAAACAT</genome_strand>
        <mrna_strand>TCGCGA-GGTCCGTCATGGTCACGACGGACCGTCATGGACTCCGTCGTCCCATACTTATGCAATTTCTTTTGTTGCTCTTCTTCATTACCCTCAACGGCAAGTATGGCGGACCGTCATAGGCACAACGGTCCGTCGAGGGCCTTCGTTCCAAAACACTTTAACTCTTGGAATATGGGTACTGGGATTACTTCTCTGAACTTCATGACGAACCTGTAGGACGGACCGTCATAGACACGATGGACCGTCACAAGCTTCGTAACCCCATACTTGGTCAGACTTCCCCATCTTCCTTCAGCAGCTGCACTACGCTGACACCTACGGACCGTCACAAGCACGACGGACCGTCATAAGCTCCGTAGGTGGTCTCTTCTGCATTTCTTCGCTCAAAATCTCCGCATTCAGCTTTGGACAGATTTCCTGCAAAATAAAAAGAAACTAATATAGAAATTAGCACAAAAAGGATTTTAGACACACTAAACTTAAGGAAAAAGTATTAATAATACCATGAAACCACGGTATATCACTTGGCCACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0074C08-dkn8r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E577891" ref_strand="+" ref_description="SGN-E577891 [LE08BA04]">
      <seq>ttcgtttcaaaatacttcagctcttggaatctgggtactggaatcacttctctgatcttcacgacgaacctgcaggacggaccgtcatagccatgacggaccgtcacaatcttcgtaatcccacacttggtgagacttccccatcttccttcagcagcttctctacgctgccacctacggagcgtcaaaggcacgatggaccgtcataagctcagtaggtggtctcttctacattttttcgctcaaaatctctgctttcagctttggacagatttcctgcaaaataaagagaaacttataccaaaattagcacaaaaaggcttacggacacactaaacttaaggcaaaagtattaattataccgtgaaaccacggtatatcagggacatgaactcgaaggccattgttggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0074C08-dkn8r/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0074C08.1" temp_strand="-" temp_description="C09HBa0074C08.1  AC234212.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0074C08 upload_account_name:spain (1 - 112940)">
        <position start="53329" stop="52349"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53029" g_stop="52649" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0074C08.1" gen_strand="-" ref_id="SGN-E577891" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>381</cumulative_length_of_scored_exons>
        <coverage percentage="0.927" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0074C08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E577891" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53029" e_stop="52649"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGTTCCAAAACACTTCAACTCTTGGAATCTGGCTACTGGGATCACTTCTCTGAACTTCAAGACGAACCTGCAGGACGGACCGTCATAGACACGATGGACCGTCACAAGCTTCGTAATCCCACACTTGGTCAGACTTCCCCATCTTCCTTCAGCAGCTGCACTACGCTGCCACCTACGGACCGTCCGAAGCACGACGGACCGTCATAAGCTGCGTAGGTGGTCTCTTCTGCATTTCTTCGCTCAAAATCTCCGCATTCACCTTTGGATAGATTTCCTGCAAAA-AAAGAGAAACTTATATAAAAATTAGCACAAAAAGGCTTTTGGACACACTAAACTTAAGGAAAAAGTATTAATAATACCGTGAAACCACGGTATATCA</genome_strand>
        <mrna_strand>TTCGTTTCAAAATACTTCAGCTCTTGGAATCTGGGTACTGGAATCACTTCTCTGATCTTCACGACGAACCTGCAGGACGGACCGTCATAGCCATGACGGACCGTCACAATCTTCGTAATCCCACACTTGGTGAGACTTCCCCATCTTCCTTCAGCAGCTTCTCTACGCTGCCACCTACGGAGCGTCAAAGGCACGATGGACCGTCATAAGCTCAGTAGGTGGTCTCTTCTACATTTTTTCGCTCAAAATCTCTGCTTTCAGCTTTGGACAGATTTCCTGCAAAATAAAGAGAAACTTATACCAAAATTAGCACAAAAAGGCTTACGGACACACTAAACTTAAGGCAAAAGTATTAATTATACCGTGAAACCACGGTATATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0074C08-dkn8r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E309238" ref_strand="+" ref_description="SGN-E309238 [cLEY-22-E7]">
      <seq>tggacttggagttggaattgatgttctgatgcagtgctgcctgaactaaacatgtaatttgaagtcttttcagggttagattatgttataacatcgtaacatgccccaatttctgataaatgccctgacatggatcctagcttttcctactgggttcttgacatgttcagatgcaagaggttgctgggaacatggaggttaccttcatggaagaggcagtatagattctttctcacaataattgcttcttctttttttttactttggtacattagtctgtccatataatggaaatgtggaatagtttcttgaaccttgtttaagttatatattgtagcccttgacaacgatgacttgctttacctcaataagcagatgggagccgaggagaatgctgaacgtcttctgctctcaaaaacgtgcatttgaagcattcaagatatcctttttgtttgtttcttctttgatgccactgcataataatattgaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0074C08-dkn8r/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0074C08.1" temp_strand="-" temp_description="C09HBa0074C08.1  AC234212.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0074C08 upload_account_name:spain (1 - 112940)">
        <position start="99754" stop="98664"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99454" g_stop="98964" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="492" r_length="492" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0074C08.1" gen_strand="-" ref_id="SGN-E309238" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0074C08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309238" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99454" e_stop="98964"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGACTTGGAGTTGGAATTGATGTTCTGATCCAGTGCTGCCTGAACTAAACATGTAATTTGAAGTCTTTTCAGGGTTAGATTATGTTATAACATCGTAACATGCCCCAATTTCTGATAAATGCCCTGACATGGATCCTAGTTTTTCCTACTGGGTTCTTGACATGTTCAGATGCAAGAGGTTGCTGGGAACATGGAGGTTACCTTCATGGAAGAGGCAGTATAGATTCTTTCTCATAATAATTGCTTCTTC-TTTTTTTTACTTTGGTACATTAGTCTGTCCATATAATGGAAATGTGGAATAGTTTCTTGAACCTTGTTTAAGTTATATATTGTAGCCCTTGACAACGATGACTTGCTTTACCTCAATAAGCAGATGGGAGCCGAGGAGAATGCTGAACGTCTTCTGCTCTCAAAAACGTGCATTTCAAGCATTCAAGATATCCTTTTTGTTTGTTTCTTCTTTGATGCCACTGCATAATAATATTGAATG</genome_strand>
        <mrna_strand>TGGACTTGGAGTTGGAATTGATGTTCTGATGCAGTGCTGCCTGAACTAAACATGTAATTTGAAGTCTTTTCAGGGTTAGATTATGTTATAACATCGTAACATGCCCCAATTTCTGATAAATGCCCTGACATGGATCCTAGCTTTTCCTACTGGGTTCTTGACATGTTCAGATGCAAGAGGTTGCTGGGAACATGGAGGTTACCTTCATGGAAGAGGCAGTATAGATTCTTTCTCACAATAATTGCTTCTTCTTTTTTTTTACTTTGGTACATTAGTCTGTCCATATAATGGAAATGTGGAATAGTTTCTTGAACCTTGTTTAAGTTATATATTGTAGCCCTTGACAACGATGACTTGCTTTACCTCAATAAGCAGATGGGAGCCGAGGAGAATGCTGAACGTCTTCTGCTCTCAAAAACGTGCATTTGAAGCATTCAAGATATCCTTTTTGTTTGTTTCTTCTTTGATGCCACTGCATAATAATATTGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0074C08-dkn8r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E274310" ref_strand="+" ref_description="SGN-E274310 [cLEN-15-G9]">
      <seq>attactcttatatagctgctgcaatctgcgataataaagtgcaagaaattctggtaagagttgagcccttctataactgtatgtactcagacaaaggtttccagattggttgatcagaaacaatgggatagtagtgaatttgagttgcaagaatggtcaggaaaagatctggaggtgtagtttgaatgatctttcgatatcccagcttacattgataaaaaaagcatacatttgatgtttttttgtgttgagtttcctcttttttcatgctttgttttgtgccacttctatcctgatttacatgtctgcattagagtatcttaagattactctcctgctgcccctgttctttggcctgaagtggacttggagttggaattgatgttctgatccagtgctgcctgaactaaacatgtaatttgaagtcttttcagggttagattatgttataacatcgtaacatgccccaatttctgataaatgccctgacatggatcctagcttttcctactgggttcttgacatgttcagatgcaagaggttgctgggaacatggaggttaccttcatggaagaggcagtatagattctttctcacaataattgcttcttctttttttttactttggtacattagtctgtccatataatggaaatgtggaatagtttcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0074C08-dkn8r/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0074C08.1" temp_strand="-" temp_description="C09HBa0074C08.1  AC234212.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0074C08 upload_account_name:spain (1 - 112940)">
        <position start="100115" stop="98845"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99815" g_stop="99145" g_length="671"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="672" r_length="672" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0074C08.1" gen_strand="-" ref_id="SGN-E274310" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0074C08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E274310" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99815" e_stop="99145"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTACTCTTATATAGCTGCTGCAATCTGCGATAATAAAGTGCAAGAAATTCTGGTAAGAGTTGAGCCCTTCTATAACTGTATGTACTCAGACAAAGGTTTCCAGATTGGTTGATCAGAAACAATGGGATAGTAGTGAATTTGAGTTGCAAGAATGGTCAGGAAAAGATCTGGAGGTGTAGTTTGAATGATCTTTCGATATCCCAGCTTACATTGATAAAAAAAGCATACATTTGATGTTTTTTTGTGTTGAGTTTCCTCTTTTTTCATGCTTTGTTTTGTGCCACTTCTATCCTGATTTACATGTCTGCATTAGAGTATCTTAAGATTACTCTCCTGCTGCCCCTGTTCTTTGGCCTGAAGTGGACTTGGAGTTGGAATTGATGTTCTGATCCAGTGCTGCCTGAACTAAACATGTAATTTGAAGTCTTTTCAGGGTTAGATTATGTTATAACATCGTAACATGCCCCAATTTCTGATAAATGCCCTGACATGGATCCTAGTTTTTCCTACTGGGTTCTTGACATGTTCAGATGCAAGAGGTTGCTGGGAACATGGAGGTTACCTTCATGGAAGAGGCAGTATAGATTCTTTCTCATAATAATTGCTTCTTC-TTTTTTTTACTTTGGTACATTAGTCTGTCCATATAATGGAAATGTGGAATAGTTTCTTG</genome_strand>
        <mrna_strand>ATTACTCTTATATAGCTGCTGCAATCTGCGATAATAAAGTGCAAGAAATTCTGGTAAGAGTTGAGCCCTTCTATAACTGTATGTACTCAGACAAAGGTTTCCAGATTGGTTGATCAGAAACAATGGGATAGTAGTGAATTTGAGTTGCAAGAATGGTCAGGAAAAGATCTGGAGGTGTAGTTTGAATGATCTTTCGATATCCCAGCTTACATTGATAAAAAAAGCATACATTTGATGTTTTTTTGTGTTGAGTTTCCTCTTTTTTCATGCTTTGTTTTGTGCCACTTCTATCCTGATTTACATGTCTGCATTAGAGTATCTTAAGATTACTCTCCTGCTGCCCCTGTTCTTTGGCCTGAAGTGGACTTGGAGTTGGAATTGATGTTCTGATCCAGTGCTGCCTGAACTAAACATGTAATTTGAAGTCTTTTCAGGGTTAGATTATGTTATAACATCGTAACATGCCCCAATTTCTGATAAATGCCCTGACATGGATCCTAGCTTTTCCTACTGGGTTCTTGACATGTTCAGATGCAAGAGGTTGCTGGGAACATGGAGGTTACCTTCATGGAAGAGGCAGTATAGATTCTTTCTCACAATAATTGCTTCTTCTTTTTTTTTACTTTGGTACATTAGTCTGTCCATATAATGGAAATGTGGAATAGTTTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0074C08-dkn8r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E329217" ref_strand="+" ref_description="SGN-E329217 [cTOD-2-I5]">
      <seq>agagttgagcccttctataactgtatgtactcagacaaaggtttccagattggttgatcagaaacaatgggatagtagtgaatttgagttgcaagaatggtcaggaaaagatctggaggtgtagtttgaatgatctttcgatatcccagcttacattgataaaaaaagcatacatttgatgtttttttgtgttgagtttcctcttttttcatgctttgttttgtgccacttctatcctgatttacatgtctgcattagagtatcttaagattactctcctgctgcccctgttctttggcctgaagtggacttggagttggaattgatgttctgatccagtgctgcctgaactaaacatgtaatttgaagtcttttcagggttagattatgttataacatcgtaacatgccccaatttctgataaatgccctgacatggatcctagcttttcctactgggttcttgacatgttcagatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0074C08-dkn8r/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0074C08.1" temp_strand="-" temp_description="C09HBa0074C08.1  AC234212.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0074C08 upload_account_name:spain (1 - 112940)">
        <position start="100059" stop="98982"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99759" g_stop="99282" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="478" r_length="478" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0074C08.1" gen_strand="-" ref_id="SGN-E329217" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0074C08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329217" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99759" e_stop="99282"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGTTGAGCCCTTCTATAACTGTATGTACTCAGACAAAGGTTTCCAGATTGGTTGATCAGAAACAATGGGATAGTAGTGAATTTGAGTTGCAAGAATGGTCAGGAAAAGATCTGGAGGTGTAGTTTGAATGATCTTTCGATATCCCAGCTTACATTGATAAAAAAAGCATACATTTGATGTTTTTTTGTGTTGAGTTTCCTCTTTTTTCATGCTTTGTTTTGTGCCACTTCTATCCTGATTTACATGTCTGCATTAGAGTATCTTAAGATTACTCTCCTGCTGCCCCTGTTCTTTGGCCTGAAGTGGACTTGGAGTTGGAATTGATGTTCTGATCCAGTGCTGCCTGAACTAAACATGTAATTTGAAGTCTTTTCAGGGTTAGATTATGTTATAACATCGTAACATGCCCCAATTTCTGATAAATGCCCTGACATGGATCCTAGTTTTTCCTACTGGGTTCTTGACATGTTCAGATG</genome_strand>
        <mrna_strand>AGAGTTGAGCCCTTCTATAACTGTATGTACTCAGACAAAGGTTTCCAGATTGGTTGATCAGAAACAATGGGATAGTAGTGAATTTGAGTTGCAAGAATGGTCAGGAAAAGATCTGGAGGTGTAGTTTGAATGATCTTTCGATATCCCAGCTTACATTGATAAAAAAAGCATACATTTGATGTTTTTTTGTGTTGAGTTTCCTCTTTTTTCATGCTTTGTTTTGTGCCACTTCTATCCTGATTTACATGTCTGCATTAGAGTATCTTAAGATTACTCTCCTGCTGCCCCTGTTCTTTGGCCTGAAGTGGACTTGGAGTTGGAATTGATGTTCTGATCCAGTGCTGCCTGAACTAAACATGTAATTTGAAGTCTTTTCAGGGTTAGATTATGTTATAACATCGTAACATGCCCCAATTTCTGATAAATGCCCTGACATGGATCCTAGCTTTTCCTACTGGGTTCTTGACATGTTCAGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0074C08-dkn8r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E596676" ref_strand="+" ref_description="SGN-E596676 [40163]">
      <seq>ctgctctcagggctcttgctcgttcaggaatgaaaattggtcgtatagaggacgtgactccaattcctactgatagcactcgcagaaagggtggtaggagaggaagaaggctgtaagcttgctgcttttgtcaagaatcaaatgcgggttcttgttgagaatgctgcaggtgttagttttgatatggacttgaatcgtattcatctactatgtagttctactgatgttggccttgcctataaattttgcttctttttcgtggttaaatttgtgaaacaattaagagaaatatgaattttagccttctatctattagctggttgagaatctaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0074C08-dkn8r/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0074C08.1" temp_strand="-" temp_description="C09HBa0074C08.1  AC234212.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0074C08 upload_account_name:spain (1 - 112940)">
        <position start="102287" stop="101245"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101987" g_stop="101940" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101939" i_stop="101828" i_length="112">
            <donor d_prob="0.986" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101827" g_stop="101552" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="325" r_length="277" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0074C08.1" gen_strand="-" ref_id="SGN-E596676" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>324</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0074C08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E596676" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101987" e_stop="101940"/>
          <exon e_start="101827" e_stop="101552"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCTCTAAGAGCTCTTGCTCGTTCTGGAATGAAAATTGGTCGTATAGGTAATGTTTAGCTTTTGTGTATCAAAATGTTAGAATTATCTATTTTTGTGAGAAACACATATGTGGAGTGAAACTGTTGATGAATTATATAACTTTCTAAATTATCTTGCAGAGGACGTGACTCCAATTCCAAATGATAGCACTCACATAAAGGGTGGTAGGAGAGGAAGAATGATGTAAGCTTGCTTCAATTGTCAATAAGGAGATGCAGTTTCTTGTTGAGAATGCTGCAGGTGTTAGTTTTGATATGAACTTGAATCTTATTCATCTACTATGTAGTTGTACTTATGTTTGCCTTGCTTATAATTTTTGCTAC-TTTTCGTGGTTAAATTTGTGAAACAATTATGAGAAATATGAATTTTAGCCTACTATCTATTAGCTGGTTGAG</genome_strand>
        <mrna_strand>CTGCTCTCAGGGCTCTTGCTCGTTCAGGAATGAAAATTGGTCGTATAG................................................................................................................AGGACGTGACTCCAATTCCTACTGATAGCACTCGCAGAAAGGGTGGTAGGAGAGGAAGAAGGCTGTAAGCTTGCTGCTTTTGTCAAGAATCAAATGCGGGTTCTTGTTGAGAATGCTGCAGGTGTTAGTTTTGATATGGACTTGAATCGTATTCATCTACTATGTAGTTCTACTGATGTTGGCCTTGCCTATAAATTTTGCTTCTTTTTCGTGGTTAAATTTGTGAAACAATTAAGAGAAATATGAATTTTAGCCTTCTATCTATTAGCTGGTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0074C08-dkn8r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E342935" ref_strand="+" ref_description="SGN-E342935 [cTOF-11-I6]">
      <seq>aggtatctcttcatttttcactataattttgctacgatttcttcagcaaattcaaggaatgaatcgctcctaagatgactaagattttgctcctacgatctgacttccattttgttcctaatcaactgactttgttctttacgatctgccaacgattttgctcctaatatgaaaattcgctcatcgtgaatctctcgtctagcttatctaatcagcgtgaagaacaaaattcctccaaatctattttcttttgcgctgttctagtcaagatgatgaatagtatagaactgagtgcttcacttcagaagatggtgtgttatagcttcatcacaatgaaaggattttgttggatttgttggaatagggttttacaggtcaaagctgatagggatgaatcttccccataagctactatgcttgcttcacatcaagcttcaagccactagtggaaacaagacgaaaacacctggacctggtgctctgtctgctctaagagctcttgctcgttctggaatgaaaattggtcgtatagaggacgtgactccaattccaaatgatagcactcacataaagggtggtaggagaggaagaatgatgntagcttgcttcaattgtcataaggagatgcagtttcttgttgagaatgctgcagatgggagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0074C08-dkn8r/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0074C08.1" temp_strand="-" temp_description="C09HBa0074C08.1  AC234212.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0074C08 upload_account_name:spain (1 - 112940)">
        <position start="103368" stop="101400"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103068" g_stop="102695" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="374" r_length="374" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102694" i_stop="102098" i_length="597">
            <donor d_prob="0.884" d_score="0.98"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102097" g_stop="101940" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="532" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101939" i_stop="101828" i_length="112">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101827" g_stop="101707" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="652" r_length="120" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0074C08.1" gen_strand="-" ref_id="SGN-E342935" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0074C08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342935" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103068" e_stop="102695"/>
          <exon e_start="102097" e_stop="101940"/>
          <exon e_start="101827" e_stop="101707"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTATCTCTTCATTTTTCACTATAATTTTGCTACGATTTCTTCAGCAAATTCAAGGAATGAATCGCTCCTAAGATGACTAAGATTTTGCTCCTACGATCTGACTTCCATTTTGTTCCTAATCAGCTGACTTTGTTCTTTACGATCTGCCAACGATTTTGCTCCTAATATGAAAATTCGCTCATCGTGAATCTCTCGTCTAGCTTATCTAATCAGCGTGAAGAACAAAATTCCTCCAAATCTATTTTCTTTTGCGCTGTTCTAGTCAAGATGATGAATAGTATAGAACTGAGTGCTTCACTTCAGAAGATGGTGTGTTATAGCTTCATCACAATGAAAGGATTTTGTTGAATTTGTTGGAATAGGGTTTTACAGGTAAACTTTTTATCTTTGAAAGTCTAAATTTATGGCATATGGGTTTATTGCTATGGTTACACATTTAGCTTTAGGGTTCTCATATTCTTGTGTTGTTGGCATGATATTATGTTAATTCTTTGCCTTATTTTTCTCTTTTAGATTTGTTGATTTCCCTTAAACCGTCAAAGGCCTAATGAATCTCGAGTTTTGGTTTAGTCTCAGACTGTTCACTGTTTGTGATGAGCTACGCTATAAGCCAAAGCTTATTGAAATTTCAGTTCATGTTCGCGAGTCTGGTGTTATTGTAACTATTTTAGGGATACTTCAAATTCTGCATAGCATTTCTACTCTTGATATAGGGTATAAAGTATGCTTTTACTTTCACTTTGACAATGCAGCCCTACTTAAATTCATCCTAAATATCATGAACCTTTTCTATCTATTTGTCGTACTAGTGCAACAATTATCGAACTAGAAAGGTTTCTATATTTTCAGTTGATGTTTTAACAATTCCAAAGCTTGTCTATATTTCTGCTCTTTGCCCTTGTCTTATTATTTTTTAGAAGTGTTGTAATGAATCTCTCTTGTAACCTGTTTTAAATATGTGGGATGAAGGTCAAAGCTGATAGGGATGAATCTTCCCCATAAGCTACTATGCTTGCTTCACATCAAGCTTCAAGCCACTAGTGGAAACAAGACGAAAACACCTGGACCTGGTGCTCTGTCTGCTCTAAGAGCTCTTGCTCGTTCTGGAATGAAAATTGGTCGTATAGGTAATGTTTAGCTTTTGTGTATCAAAATGTTAGAATTATCTATTTTTGTGAGAAACACATATGTGGAGTGAAACTGTTGATGAATTATATAACTTTCTAAATTATCTTGCAGAGGACGTGACTCCAATTCCAAATGATAGCACTCACATAAAGGGTGGTAGGAGAGGAAGAATGATGTAAGCTTGCTTCAATTGTCAATAAGGAGATGCAGTTTCTTGTTGAGAATGCTGCAG</genome_strand>
        <mrna_strand>AGGTATCTCTTCATTTTTCACTATAATTTTGCTACGATTTCTTCAGCAAATTCAAGGAATGAATCGCTCCTAAGATGACTAAGATTTTGCTCCTACGATCTGACTTCCATTTTGTTCCTAATCAACTGACTTTGTTCTTTACGATCTGCCAACGATTTTGCTCCTAATATGAAAATTCGCTCATCGTGAATCTCTCGTCTAGCTTATCTAATCAGCGTGAAGAACAAAATTCCTCCAAATCTATTTTCTTTTGCGCTGTTCTAGTCAAGATGATGAATAGTATAGAACTGAGTGCTTCACTTCAGAAGATGGTGTGTTATAGCTTCATCACAATGAAAGGATTTTGTTGGATTTGTTGGAATAGGGTTTTACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAAGCTGATAGGGATGAATCTTCCCCATAAGCTACTATGCTTGCTTCACATCAAGCTTCAAGCCACTAGTGGAAACAAGACGAAAACACCTGGACCTGGTGCTCTGTCTGCTCTAAGAGCTCTTGCTCGTTCTGGAATGAAAATTGGTCGTATAG................................................................................................................AGGACGTGACTCCAATTCCAAATGATAGCACTCACATAAAGGGTGGTAGGAGAGGAAGAATGATGNTAGCTTGCTTCAATTGTC-ATAAGGAGATGCAGTTTCTTGTTGAGAATGCTGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0074C08-dkn8r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E701071" ref_strand="+" ref_description="SGN-E701071 [FA14DG11]">
      <seq>ttgcattgctgagtgtattaaatatgtagtgtaagacgagagtagcaataaacccctcattgaagaagcagcaccaactaaacccacatcgtctctcatcaatgctacaatcacattttgtgcaaccttgcaaaaaaaagaaaagactcttgtttgatcaaaaatggggggaagttgctttctggttttgcttcttcaaatcatagttactcaagttgttggtgttggtgttggtgttggcgttggcgttggtgttggtgttggacctggaggtgtttggtttggtggagggatcaacagcccaaacccaggagctgtcccaagtcaaagttcagcatacactgctcttcaagcatggaaatctgcaattactgatgatccatcggggattttgaagaattgggtgggtccaaatgtgtgtagttacaaaggaattttctgctcaaactctcaagattacatgggcaacccaacagacccagttgttacaggtatagatctcaatcatgcaaatcttcaaggcactctagtaaaagaactatcttatttaacagatgtgtctctcattcatctcaataccaacagattttcaggtataattccacaaacattcagagatctgtcttcactcgttgaattagaccttagtaacaaccatttctcaggtccattccctactacagtactattcatcccaaatcttctttatttagatctcagattcaacagtttcacaggcccaattcccgaggatctgttcaacagaaaacttgatgctatttttcttaataataaccagtttgatggtgaactacctcagaagttagggaattncccctgcttcagtcattaattttgctaataataagtttactggcaacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0074C08-dkn8r/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0074C08.1" temp_strand="+" temp_description="C09HBa0074C08.1  AC234212.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0074C08 upload_account_name:spain (1 - 112940)">
        <position start="107367" stop="108849"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107667" g_stop="108549" g_length="883"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="884" r_length="884" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0074C08.1" gen_strand="+" ref_id="SGN-E701071" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>883</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0074C08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701071" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107667" e_stop="108549"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCAATGCTGAGTGTATTAAATATGTAGTGTAAGACGAGAGTAGCAATAAACCCCTCATTGAAGAAGCAGCACCAACTAAACCCACATCGTCTCTCATCAATGCTACAATCACATTTTGTGCAACCTTGCAAAAAAAAGAAAAGACTCTTGTTTGATCAAAAATGGGGGGAAGTTGCTTTCTGGTTTTGCTTCTTCAAATCATAGTTACTCAAGTTGTTGGTGTTGGTGTTGGTGTTGGCGTTGGCGTTGGTGTTGGTGTTGGACCTGGAGGTGTTTGGTTTGGTGGAGGGATCAACAGCCCAAACCCAGGAGCTGTCCCAAGTCAAAGTTCAGCATACACTGCTCTTCAAGCATGGAAATCTGCAATTACTGATGATCCATCGGGGATTTTGAAGAATTGGGTGGGTCCAAATGTGTGTAGTTACAAAGGAATTTTCTGCTCAAACTCTCAAGATTACATGGGCAACCCAACAGACCCAGTTGTTACAGGTATAGATCTCAATCATGCAAATCTTCAAGGCACTCTAGTAAAAGAACTATCTTATTTAACAGATGTGTCTCTCATTCATCTCAATACCAACAGATTTTCAGGTATAATTCCACAAACATTCAGAGATCTGTCTTCACTCGTTGAATTAGACCTTAGTAACAACCATTTCTCAGGTCCATTCCCTACTACAGTACTATTCATCCCAAATCTTCTTTATTTAGATCTCAGATTCAACAGTTTCACAGGCCCAATTCCCGAGGATCTGTTCAACAGAAAACTTGATGCTATTTTTCTTAATAATAACCAGTTTGATGGTGAACTACCTCAGAGTTTAGGGAATT-CCCCTGCTTCAGTCATTAATTTTGCTAATAATAAGTTTACTGGCAACATT</genome_strand>
        <mrna_strand>TTGCATTGCTGAGTGTATTAAATATGTAGTGTAAGACGAGAGTAGCAATAAACCCCTCATTGAAGAAGCAGCACCAACTAAACCCACATCGTCTCTCATCAATGCTACAATCACATTTTGTGCAACCTTGCAAAAAAAAGAAAAGACTCTTGTTTGATCAAAAATGGGGGGAAGTTGCTTTCTGGTTTTGCTTCTTCAAATCATAGTTACTCAAGTTGTTGGTGTTGGTGTTGGTGTTGGCGTTGGCGTTGGTGTTGGTGTTGGACCTGGAGGTGTTTGGTTTGGTGGAGGGATCAACAGCCCAAACCCAGGAGCTGTCCCAAGTCAAAGTTCAGCATACACTGCTCTTCAAGCATGGAAATCTGCAATTACTGATGATCCATCGGGGATTTTGAAGAATTGGGTGGGTCCAAATGTGTGTAGTTACAAAGGAATTTTCTGCTCAAACTCTCAAGATTACATGGGCAACCCAACAGACCCAGTTGTTACAGGTATAGATCTCAATCATGCAAATCTTCAAGGCACTCTAGTAAAAGAACTATCTTATTTAACAGATGTGTCTCTCATTCATCTCAATACCAACAGATTTTCAGGTATAATTCCACAAACATTCAGAGATCTGTCTTCACTCGTTGAATTAGACCTTAGTAACAACCATTTCTCAGGTCCATTCCCTACTACAGTACTATTCATCCCAAATCTTCTTTATTTAGATCTCAGATTCAACAGTTTCACAGGCCCAATTCCCGAGGATCTGTTCAACAGAAAACTTGATGCTATTTTTCTTAATAATAACCAGTTTGATGGTGAACTACCTCAGAAGTTAGGGAATTNCCCCTGCTTCAGTCATTAATTTTGCTAATAATAAGTTTACTGGCAACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0074C08-dkn8r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E704321" ref_strand="+" ref_description="SGN-E704321 [FA23DH05]">
      <seq>gcaatgctgagtgtattaaatatgtagtgtaagacgagagtagcaataaacccctcattgaagaagcagcaccaactaaacccacatcgtctctcatcaatgctacaatcacattttgtgcaaccttgcaaaaaaaagaaaagactcttgtttgatcaaaaatggggggaagttgctttctggttttgcttcttcaaatcatagttactcaagttgttggtgttggtgttggtgttggcgttggcgttggtgttggtgttggacctggaggtgtttggtttggtggagggatcaacagcccaaacccaggagctgtcccaagtcaaagttcagcatacactgctcttcaagcatggaaatctgcaattactgatgatccatcggggattttgaagaattgggtgggtccaaatgtgtgtagttacaaaggaattttctgctcaaactctcaagattacatgggcaacccaacagacccagttgttacaggtatagatctcaatcatgcaaatcttcaaggcactctagtaaaagaactatcttatttaacagatgtgtctctcattcatctcaataccaacagattttcaggtataattccacaaacattcagagatctgtcttcactcgttgaattagaccttagtaacaaccatttctcaggtccattccctactacagtactattcatcccaaatcttctttatttagatctcagattcaacagtttcacaggcccaattcccgaggatctgttcaacagaaaacttgatgctatttttcttaataata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0074C08-dkn8r/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0074C08.1" temp_strand="+" temp_description="C09HBa0074C08.1  AC234212.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0074C08 upload_account_name:spain (1 - 112940)">
        <position start="107369" stop="108760"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107669" g_stop="108460" g_length="792"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="792" r_length="792" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0074C08.1" gen_strand="+" ref_id="SGN-E704321" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>792</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0074C08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704321" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107669" e_stop="108460"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAATGCTGAGTGTATTAAATATGTAGTGTAAGACGAGAGTAGCAATAAACCCCTCATTGAAGAAGCAGCACCAACTAAACCCACATCGTCTCTCATCAATGCTACAATCACATTTTGTGCAACCTTGCAAAAAAAAGAAAAGACTCTTGTTTGATCAAAAATGGGGGGAAGTTGCTTTCTGGTTTTGCTTCTTCAAATCATAGTTACTCAAGTTGTTGGTGTTGGTGTTGGTGTTGGCGTTGGCGTTGGTGTTGGTGTTGGACCTGGAGGTGTTTGGTTTGGTGGAGGGATCAACAGCCCAAACCCAGGAGCTGTCCCAAGTCAAAGTTCAGCATACACTGCTCTTCAAGCATGGAAATCTGCAATTACTGATGATCCATCGGGGATTTTGAAGAATTGGGTGGGTCCAAATGTGTGTAGTTACAAAGGAATTTTCTGCTCAAACTCTCAAGATTACATGGGCAACCCAACAGACCCAGTTGTTACAGGTATAGATCTCAATCATGCAAATCTTCAAGGCACTCTAGTAAAAGAACTATCTTATTTAACAGATGTGTCTCTCATTCATCTCAATACCAACAGATTTTCAGGTATAATTCCACAAACATTCAGAGATCTGTCTTCACTCGTTGAATTAGACCTTAGTAACAACCATTTCTCAGGTCCATTCCCTACTACAGTACTATTCATCCCAAATCTTCTTTATTTAGATCTCAGATTCAACAGTTTCACAGGCCCAATTCCCGAGGATCTGTTCAACAGAAAACTTGATGCTATTTTTCTTAATAATA</genome_strand>
        <mrna_strand>GCAATGCTGAGTGTATTAAATATGTAGTGTAAGACGAGAGTAGCAATAAACCCCTCATTGAAGAAGCAGCACCAACTAAACCCACATCGTCTCTCATCAATGCTACAATCACATTTTGTGCAACCTTGCAAAAAAAAGAAAAGACTCTTGTTTGATCAAAAATGGGGGGAAGTTGCTTTCTGGTTTTGCTTCTTCAAATCATAGTTACTCAAGTTGTTGGTGTTGGTGTTGGTGTTGGCGTTGGCGTTGGTGTTGGTGTTGGACCTGGAGGTGTTTGGTTTGGTGGAGGGATCAACAGCCCAAACCCAGGAGCTGTCCCAAGTCAAAGTTCAGCATACACTGCTCTTCAAGCATGGAAATCTGCAATTACTGATGATCCATCGGGGATTTTGAAGAATTGGGTGGGTCCAAATGTGTGTAGTTACAAAGGAATTTTCTGCTCAAACTCTCAAGATTACATGGGCAACCCAACAGACCCAGTTGTTACAGGTATAGATCTCAATCATGCAAATCTTCAAGGCACTCTAGTAAAAGAACTATCTTATTTAACAGATGTGTCTCTCATTCATCTCAATACCAACAGATTTTCAGGTATAATTCCACAAACATTCAGAGATCTGTCTTCACTCGTTGAATTAGACCTTAGTAACAACCATTTCTCAGGTCCATTCCCTACTACAGTACTATTCATCCCAAATCTTCTTTATTTAGATCTCAGATTCAACAGTTTCACAGGCCCAATTCCCGAGGATCTGTTCAACAGAAAACTTGATGCTATTTTTCTTAATAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0074C08-dkn8r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E745349" ref_strand="+" ref_description="SGN-E745349 [GI|47105729]">
      <seq>ggtattaaatatgtagtgtaagacgagagtagcaataaacccctcattgaagaagcagcaccaactaagcccacatcgtctctcatcaatgctacaatcacattttgtgcaaccttgcaaaaaaaagaaaagactcttgtttgatcaaaaatggggggaagttgctttctggttttgcttcttcaaatcatagttactcaagttgttggtgttggtgttggtgttggcgttggcgttggtgttggtgttggacctggaggtgtttggtttggtggagggatcaacagcccaaacccaggagctgtcccaagtcaaagttcagcatacactgctcttcaagcatggaaatctgcaattactgatgatccatcggggattttgaagaattgggtgggtccaaatgtgtgtagttacaaaggaattttctgctcaaactctcaagattacatgggcaacccaacagacccagttgttacaggtatagatctcaatcatgcaaatcttcaaggcactctagtaaaagaactatcttatttaacagatgtgtctctcattcatctcaataccaacagattttcaggtataattccacaaacattcagagatctgtcttcactcgttgaattagaccttagtaacaaccatttctcaggtccattccctactacagtactattcatcccaaatcttctttatttagatctcagattcaacagtttcacaggcccaattcccgaggatctgttcaacagaaaacttgatgctatttttcttaataataaccagtttgatggtgaactacctcagagtttagggaattcccctgcttcagtcattaattttgctaataataagtttactggcaacattccttttagtttagggtacatgggtccgagaattaaggagattttgttcttaaacaatgagttaaatggttgtataccagaaggtgtgggattatggacggatttgcaagtattagatgtaagtttcaattcactgatggggcatttgcctgataccctttcttgtttgagtggcattgaggttctcaacttgggacataacaagttatctggagatttaccagacttggtttgttcactaagaaaccttgtgaatttgactcttgcttacaatttcttctctgagttgagccaagattgtgacaaacttccattgagaaatgtgggtattgatttctcattgaactgtattccaggaagacaaatgcaaaggcctcaacctgagtgctctgtcattccaggtggaagtcttagttgccttagagtacctgcagtaaagcctcttgtttgtggatgaaaaaattactattaccggacttagcagggctccaacgtgaaccaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0074C08-dkn8r/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0074C08.1" temp_strand="+" temp_description="C09HBa0074C08.1  AC234212.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0074C08 upload_account_name:spain (1 - 112940)">
        <position start="107381" stop="109367"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107680" g_stop="109069" g_length="1390"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1390" r_length="1390" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0074C08.1" gen_strand="+" ref_id="SGN-E745349" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>1390</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0074C08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745349" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107680" e_stop="109069"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTATTAAATATGTAGTGTAAGACGAGAGTAGCAATAAACCCCTCATTGAAGAAGCAGCACCAACTAAACCCACATCGTCTCTCATCAATGCTACAATCACATTTTGTGCAACCTTGCAAAAAAAAGAAAAGACTCTTGTTTGATCAAAAATGGGGGGAAGTTGCTTTCTGGTTTTGCTTCTTCAAATCATAGTTACTCAAGTTGTTGGTGTTGGTGTTGGTGTTGGCGTTGGCGTTGGTGTTGGTGTTGGACCTGGAGGTGTTTGGTTTGGTGGAGGGATCAACAGCCCAAACCCAGGAGCTGTCCCAAGTCAAAGTTCAGCATACACTGCTCTTCAAGCATGGAAATCTGCAATTACTGATGATCCATCGGGGATTTTGAAGAATTGGGTGGGTCCAAATGTGTGTAGTTACAAAGGAATTTTCTGCTCAAACTCTCAAGATTACATGGGCAACCCAACAGACCCAGTTGTTACAGGTATAGATCTCAATCATGCAAATCTTCAAGGCACTCTAGTAAAAGAACTATCTTATTTAACAGATGTGTCTCTCATTCATCTCAATACCAACAGATTTTCAGGTATAATTCCACAAACATTCAGAGATCTGTCTTCACTCGTTGAATTAGACCTTAGTAACAACCATTTCTCAGGTCCATTCCCTACTACAGTACTATTCATCCCAAATCTTCTTTATTTAGATCTCAGATTCAACAGTTTCACAGGCCCAATTCCCGAGGATCTGTTCAACAGAAAACTTGATGCTATTTTTCTTAATAATAACCAGTTTGATGGTGAACTACCTCAGAGTTTAGGGAATTCCCCTGCTTCAGTCATTAATTTTGCTAATAATAAGTTTACTGGCAACATTCCTTTTAGTTTAGGGTACATGGGTCCGAGAATTAAGGAGATTTTGTTCTTAAACAATGAGTTAAATGGTTGTATACCAGAAGGTGTGGGATTATGGACGGATTTGCAAGTATTAGATGTAAGTTTCAATTCACTGATGGGGCATTTGCCTGATACCCTTTCTTGTTTGAGTGGCATTGAGGTTCTCAACTTGGGACATAACAAGTTATCTGGAGATTTACCAGACTTGGTTTGTTCACTAAGAAACCTTGTGAATTTGACTCTTGCTTACAATTTCTTCTCTGAGTTGAGCCAAGATTGTGACAAACTTCCATTGAGAAATGTGGGTATTGATTTCTCATTGAACTGTATTCCAGGAAGACAAATGCAAAGGCCTCAACCTGAGTGCTCTGTCATTCCAGGTGGAAGTCTTAGTTGCCTTAGAGTACCTGCAGTAAAGCCTCTTGTTTGTGGATGAAAAAATTACTATTACCGGACTTAGCAGGGCTCCAACGTGAACTAAAAAATAAAAAAGAAAAATG</genome_strand>
        <mrna_strand>GGTATTAAATATGTAGTGTAAGACGAGAGTAGCAATAAACCCCTCATTGAAGAAGCAGCACCAACTAAGCCCACATCGTCTCTCATCAATGCTACAATCACATTTTGTGCAACCTTGCAAAAAAAAGAAAAGACTCTTGTTTGATCAAAAATGGGGGGAAGTTGCTTTCTGGTTTTGCTTCTTCAAATCATAGTTACTCAAGTTGTTGGTGTTGGTGTTGGTGTTGGCGTTGGCGTTGGTGTTGGTGTTGGACCTGGAGGTGTTTGGTTTGGTGGAGGGATCAACAGCCCAAACCCAGGAGCTGTCCCAAGTCAAAGTTCAGCATACACTGCTCTTCAAGCATGGAAATCTGCAATTACTGATGATCCATCGGGGATTTTGAAGAATTGGGTGGGTCCAAATGTGTGTAGTTACAAAGGAATTTTCTGCTCAAACTCTCAAGATTACATGGGCAACCCAACAGACCCAGTTGTTACAGGTATAGATCTCAATCATGCAAATCTTCAAGGCACTCTAGTAAAAGAACTATCTTATTTAACAGATGTGTCTCTCATTCATCTCAATACCAACAGATTTTCAGGTATAATTCCACAAACATTCAGAGATCTGTCTTCACTCGTTGAATTAGACCTTAGTAACAACCATTTCTCAGGTCCATTCCCTACTACAGTACTATTCATCCCAAATCTTCTTTATTTAGATCTCAGATTCAACAGTTTCACAGGCCCAATTCCCGAGGATCTGTTCAACAGAAAACTTGATGCTATTTTTCTTAATAATAACCAGTTTGATGGTGAACTACCTCAGAGTTTAGGGAATTCCCCTGCTTCAGTCATTAATTTTGCTAATAATAAGTTTACTGGCAACATTCCTTTTAGTTTAGGGTACATGGGTCCGAGAATTAAGGAGATTTTGTTCTTAAACAATGAGTTAAATGGTTGTATACCAGAAGGTGTGGGATTATGGACGGATTTGCAAGTATTAGATGTAAGTTTCAATTCACTGATGGGGCATTTGCCTGATACCCTTTCTTGTTTGAGTGGCATTGAGGTTCTCAACTTGGGACATAACAAGTTATCTGGAGATTTACCAGACTTGGTTTGTTCACTAAGAAACCTTGTGAATTTGACTCTTGCTTACAATTTCTTCTCTGAGTTGAGCCAAGATTGTGACAAACTTCCATTGAGAAATGTGGGTATTGATTTCTCATTGAACTGTATTCCAGGAAGACAAATGCAAAGGCCTCAACCTGAGTGCTCTGTCATTCCAGGTGGAAGTCTTAGTTGCCTTAGAGTACCTGCAGTAAAGCCTCTTGTTTGTGGATGAAAAAATTACTATTACCGGACTTAGCAGGGCTCCAACGTGAACCAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0074C08-dkn8r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E208246" ref_strand="+" ref_description="SGN-E208246 [cLEC-37-J11]">
      <seq>ttaaatatgtagtgtaagacgagagtagcaataaacccctcattgaagaagcagcaccaactaaacccacatcgtctctcatcaatgctacaatcacattttgtgcaaccttgcaaaaaaaagaaaagactcttgtttgatcaaaaatggggggaagttgctttctggttttgcttcttcaaatcatagttactcaagttgttggtgttggtgttggtgttggcgttggcgttggtgttggtgttggacctggaggtgtttggtttggtggagggatcaacagcccaaacccaggagctgtcccaagtcaaagttcagcatacactgctcttcaagcatggaaatctgcaattactgatgatccatcggggattttgaagaattgggtgggtccaaatgtgtgtagttacaaaggaattttctgctcaaactctcaagattacatgggcaacccaacagacccagttgttacaggtatagatctcaatcatgcaaatcttcaaggcactctagtaaaagaactatcttatttaacagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0074C08-dkn8r/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0074C08.1" temp_strand="+" temp_description="C09HBa0074C08.1  AC234212.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0074C08 upload_account_name:spain (1 - 112940)">
        <position start="107384" stop="108522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107684" g_stop="108222" g_length="539"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="539" r_length="539" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0074C08.1" gen_strand="+" ref_id="SGN-E208246" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0074C08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208246" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107684" e_stop="108222"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAATATGTAGTGTAAGACGAGAGTAGCAATAAACCCCTCATTGAAGAAGCAGCACCAACTAAACCCACATCGTCTCTCATCAATGCTACAATCACATTTTGTGCAACCTTGCAAAAAAAAGAAAAGACTCTTGTTTGATCAAAAATGGGGGGAAGTTGCTTTCTGGTTTTGCTTCTTCAAATCATAGTTACTCAAGTTGTTGGTGTTGGTGTTGGTGTTGGCGTTGGCGTTGGTGTTGGTGTTGGACCTGGAGGTGTTTGGTTTGGTGGAGGGATCAACAGCCCAAACCCAGGAGCTGTCCCAAGTCAAAGTTCAGCATACACTGCTCTTCAAGCATGGAAATCTGCAATTACTGATGATCCATCGGGGATTTTGAAGAATTGGGTGGGTCCAAATGTGTGTAGTTACAAAGGAATTTTCTGCTCAAACTCTCAAGATTACATGGGCAACCCAACAGACCCAGTTGTTACAGGTATAGATCTCAATCATGCAAATCTTCAAGGCACTCTAGTAAAAGAACTATCTTATTTAACAGAT</genome_strand>
        <mrna_strand>TTAAATATGTAGTGTAAGACGAGAGTAGCAATAAACCCCTCATTGAAGAAGCAGCACCAACTAAACCCACATCGTCTCTCATCAATGCTACAATCACATTTTGTGCAACCTTGCAAAAAAAAGAAAAGACTCTTGTTTGATCAAAAATGGGGGGAAGTTGCTTTCTGGTTTTGCTTCTTCAAATCATAGTTACTCAAGTTGTTGGTGTTGGTGTTGGTGTTGGCGTTGGCGTTGGTGTTGGTGTTGGACCTGGAGGTGTTTGGTTTGGTGGAGGGATCAACAGCCCAAACCCAGGAGCTGTCCCAAGTCAAAGTTCAGCATACACTGCTCTTCAAGCATGGAAATCTGCAATTACTGATGATCCATCGGGGATTTTGAAGAATTGGGTGGGTCCAAATGTGTGTAGTTACAAAGGAATTTTCTGCTCAAACTCTCAAGATTACATGGGCAACCCAACAGACCCAGTTGTTACAGGTATAGATCTCAATCATGCAAATCTTCAAGGCACTCTAGTAAAAGAACTATCTTATTTAACAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0074C08-dkn8r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E464968" ref_strand="+" ref_description="SGN-E464968 [cPRO-19-P7]">
      <seq>tgtagtgtaaaacgagagtagcaataaacctctcattgaagaagcaccaactaaacccacatcgtctctcatcaatgctacaatcacattttgtgcaaccttgcaaaaaaacgaaacgcctcttgtttgaccaaaaatggggggaatttgctttgtggttttgctccttcaaatcatagttactgaagttgttggtgctggtgttggtgttggtgttggcgttggtgtaggacctggaggtgtttggattggaggatggatctacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0074C08-dkn8r/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0074C08.1" temp_strand="+" temp_description="C09HBa0074C08.1  AC234212.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0074C08 upload_account_name:spain (1 - 112940)">
        <position start="107431" stop="108224"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107691" g_stop="107966" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="267" r_length="267" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0074C08.1" gen_strand="+" ref_id="SGN-E464968" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>276</cumulative_length_of_scored_exons>
        <coverage percentage="1.034" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0074C08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E464968" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107691" e_stop="107966"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTAGTGTAAGACGAGAGTAGCAATAAACCCCTCATTGAAGAAGCAGCACCAACTAAACCCACATCGTCTCTCATCAATGCTACAATCACATTTTGTGCAACCTTGCAAAAAAAAGAAAAGACTCTTGTTTGATCAAAAATGGGGGGAAGTTGCTTTCTGGTTTTGCTTCTTCAAATCATAGTTACTCAAGTTGTTGGTGTTGGTGTTGGTGTTGGCGTTGGCGTTGGTGTTGGTGTTGGACCTGGAGGTGTTTGGTTTGGTGGAGGGATCAACAG</genome_strand>
        <mrna_strand>TGTAGTGTAAAACGAGAGTAGCAATAAACCTCTCATTGAAG-A--AGCACCAACTAAACCCACATCGTCTCTCATCAATGCTACAATCACATTTTGTGCAACCTTGCAAAAAAACGAAACGCCTCTTGTTTGACCAAAAATGGGGGGAATTTGCTTTGTGGTTTTGCTCCTTCAAATCATAGTTACTGAAGTTGTTGGTGCTGGTGTTGGTGTT-G-G-T---GTTGGCGTTGGTGTAGGACCTGGAGGTGTTTGGATTGGAGGATGGATCTACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0074C08-dkn8r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E440538" ref_strand="+" ref_description="SGN-E440538 [cSTA-17-G18]">
      <seq>cgaggtgtaaaacgagagtagcaataaacctctcattggagaagcaccaactaaacccacatcgtctctcatcaatgctacaatcacattttgtgccaccttgcaaaaaaacgaaacgcctcttgtttgaccaaaaatggggggaatttgctttgtggttttgctccttcaaatcatagttactgaagttgttggtgctggtgttggcgttggtgttggcgttggtgttggacctggaggtgtttggtttggtggagggatcaacaacccaagcccaggtgttgtcccaagtcaaaattcggcttacactgctcttcaagcatggaaatctgcaatcactgatgatccaacggggattttgaacaatagcatgggtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0074C08-dkn8r/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0074C08.1" temp_strand="+" temp_description="C09HBa0074C08.1  AC234212.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0074C08 upload_account_name:spain (1 - 112940)">
        <position start="107431" stop="108376"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107696" g_stop="108076" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="377" r_length="372" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0074C08.1" gen_strand="+" ref_id="SGN-E440538" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>381</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0074C08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E440538" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107696" e_stop="108076"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTAAGACGAGAGTAGCAATAAACCCCTCATTGAAGAAGCAGCACCAACTAAACCCACATCGTCTCTCATCAATGCTACAATCACATTTTGTGCAACCTTGCAAAAAAAAGAAAAGACTCTTGTTTGATCAAAAATGGGGGGAAGTTGCTTTCTGGTTTTGCTTCTTCAAATCATAGTTACTCAAGTTGTTGGTGTTGGTGTTGGTGTTGGCGTTGGCGTTGGTGTTGGTGTTGGACCTGGAGGTGTTTGGTTTGGTGGAGGGATCAACAGCCCAAACCCAGGAGCTGTCCCAAGTCAAAGTTCAGCATACACTGCTCTTCAAGCATGGAAATCTGCAATTACTGATGATCCATCGGGGATTTTGAAGAATTGGGTGGGTC</genome_strand>
        <mrna_strand>TGTAAAACGAGAGTAGCAATAAACCTCTCATTG--G-AGAAGCACCAACTAAACCCACATCGTCTCTCATCAATGCTACAATCACATTTTGTGCCACCTTGCAAAAAAACGAAACGCCTCTTGTTTGACCAAAAATGGGGGGAATTTGCTTTGTGGTTTTGCTCCTTCAAATCATAGTTACTGAA---G-T--TGTTGGTGCTGGTGTTGGCGTTGGTGTTGGCGTTGGTGTTGGACCTGGAGGTGTTTGGTTTGGTGGAGGGATCAACAACCCAAGCCCAGGTGTTGTCCCAAGTCAAAATTCGGCTTACACTGCTCTTCAAGCATGGAAATCTGCAATCACTGATGATCCAACGGGGATTTTGAACAATAGCATGGGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0074C08-dkn8r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E456641" ref_strand="+" ref_description="SGN-E456641 [cSTS-30-I17]">
      <seq>ataaacctctcattgaagaagcaccaactaaacccacatcgtctctcatcaatgctacaatcacattttgtgcaaccttgcaaaaaaacgaaacgcctcttgtttgaccaaaaatggggggaatttgctttgtggttttgctccttcaaatcatagttactgaagttgttggtgctggtgttggtgttggtgttggcgttggtgttggacctggaggtgtttggtttggtggagggatcaacagcccaagcccaggtgttgtcccaagtcaaaattcggcttacactgctcttcaagcatggaaatctgcaatcactgatgatccaatggggattttgaagaattggatgggtccaaatgtgtgtacttacagaggaattttctgcacaaactctcaagattacatgggcaacccaacagacccagttgttacaggtatagatctcaatcatgcaaatcttcaaggcactcttgttaaagaactgtcttacttaacagatatttctctcattcacctcaataccaacagattttcaggtataattccacaaacattcagagatctgtcttcactcgttgaattagaccttagtaacaaccatttctctggtccattccctactacagtactattcatcccaaatcttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0074C08-dkn8r/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0074C08.1" temp_strand="+" temp_description="C09HBa0074C08.1  AC234212.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0074C08 upload_account_name:spain (1 - 112940)">
        <position start="107431" stop="108672"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107714" g_stop="108372" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="650" r_length="650" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0074C08.1" gen_strand="+" ref_id="SGN-E456641" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.014" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0074C08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E456641" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107714" e_stop="108372"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAACCCCTCATTGAAGAAGCAGCACCAACTAAACCCACATCGTCTCTCATCAATGCTACAATCACATTTTGTGCAACCTTGCAAAAAAAAGAAAAGACTCTTGTTTGATCAAAAATGGGGGGAAGTTGCTTTCTGGTTTTGCTTCTTCAAATCATAGTTACTCAAGTTGTTGGTGTTGGTGTTGGTGTTGGCGTTGGCGTTGGTGTTGGTGTTGGACCTGGAGGTGTTTGGTTTGGTGGAGGGATCAACAGCCCAAACCCAGGAGCTGTCCCAAGTCAAAGTTCAGCATACACTGCTCTTCAAGCATGGAAATCTGCAATTACTGATGATCCATCGGGGATTTTGAAGAATTGGGTGGGTCCAAATGTGTGTAGTTACAAAGGAATTTTCTGCTCAAACTCTCAAGATTACATGGGCAACCCAACAGACCCAGTTGTTACAGGTATAGATCTCAATCATGCAAATCTTCAAGGCACTCTAGTAAAAGAACTATCTTATTTAACAGATGTGTCTCTCATTCATCTCAATACCAACAGATTTTCAGGTATAATTCCACAAACATTCAGAGATCTGTCTTCACTCGTTGAATTAGACCTTAGTAACAACCATTTCTCAGGTCCATTCCCTACTACAGTACTATTCATCCCAAATCTTCTT</genome_strand>
        <mrna_strand>ATAAACCTCTCATTGAAGAA---GCACCAACTAAACCCACATCGTCTCTCATCAATGCTACAATCACATTTTGTGCAACCTTGCAAAAAAACGAAACGCCTCTTGTTTGACCAAAAATGGGGGGAATTTGCTTTGTGGTTTTGCTCCTTCAAATCATAGTTACTGAAGTTGTTGGTGCTGGTGTTGGTGTT-G-G-T---GTTGGCGTTGGTGTTGGACCTGGAGGTGTTTGGTTTGGTGGAGGGATCAACAGCCCAAGCCCAGGTGTTGTCCCAAGTCAAAATTCGGCTTACACTGCTCTTCAAGCATGGAAATCTGCAATCACTGATGATCCAATGGGGATTTTGAAGAATTGGATGGGTCCAAATGTGTGTACTTACAGAGGAATTTTCTGCACAAACTCTCAAGATTACATGGGCAACCCAACAGACCCAGTTGTTACAGGTATAGATCTCAATCATGCAAATCTTCAAGGCACTCTTGTTAAAGAACTGTCTTACTTAACAGATATTTCTCTCATTCACCTCAATACCAACAGATTTTCAGGTATAATTCCACAAACATTCAGAGATCTGTCTTCACTCGTTGAATTAGACCTTAGTAACAACCATTTCTCTGGTCCATTCCCTACTACAGTACTATTCATCCCAAATCTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0074C08-dkn8r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E689349" ref_strand="+" ref_description="SGN-E689349 [t3_tus_84_E16]">
      <seq>catggaagaagcagcaccaactaaacccacatcgtctctcatcaatgctacaatcacattttgtgcaaccttgcaaaaaaaagaaaagactcttgtttgatcaaaaatggggggaagttgctttctggttttgcttcttcaaatcatagttactcaagttgttggtgttggtgttggtgttggcgttggcgttggtgttggtgttggacctggaggtgtttggtttggtggagggatcaacagcccaaacccaggagctgtcccaagtcaaagttcagcatacactgctcttcaagcatggaaatctgcaattactgatgatccatcggggattttgaagaattgggtgggtccaaatgtgtgtagttacaaaggaattttctgctcaaactctcaagattacatgggcaacccaacagacccagttgttacagattttcaggtataattccacaaacattcagagatctgtcttcactcgttgaattagaccttagtaacaaccatttctcaggtccattccctactacagtactattcatcccaaatcttctttatttagatctcagattcaacagtttcacaggcccaattcccgaggatctgttcaacagaaaacttgatgctatttttcttaataataaccagtttgatggtgaactacctcaaagtttagggaattcccctgcttcagtcattaattttgctaataataagtttactggcaacattccttttagtttaggggacatgggtccgagaattaaggagattttgttctttaacaatgagttaaatggttgtataccagaaggtgtgggattatggacggatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0074C08-dkn8r/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0074C08.1" temp_strand="+" temp_description="C09HBa0074C08.1  AC234212.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0074C08 upload_account_name:spain (1 - 112940)">
        <position start="107424" stop="108954"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107724" g_stop="108157" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="434" r_length="434" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108158" i_stop="108251" i_length="94">
            <donor d_prob="0.816" d_score="1.00"/>
            <acceptor a_prob="0.536" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108252" g_stop="108654" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="837" r_length="403" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0074C08.1" gen_strand="+" ref_id="SGN-E689349" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>837</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0074C08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E689349" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107724" e_stop="108157"/>
          <exon e_start="108252" e_stop="108654"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTGAAGAAGCAGCACCAACTAAACCCACATCGTCTCTCATCAATGCTACAATCACATTTTGTGCAACCTTGCAAAAAAAAGAAAAGACTCTTGTTTGATCAAAAATGGGGGGAAGTTGCTTTCTGGTTTTGCTTCTTCAAATCATAGTTACTCAAGTTGTTGGTGTTGGTGTTGGTGTTGGCGTTGGCGTTGGTGTTGGTGTTGGACCTGGAGGTGTTTGGTTTGGTGGAGGGATCAACAGCCCAAACCCAGGAGCTGTCCCAAGTCAAAGTTCAGCATACACTGCTCTTCAAGCATGGAAATCTGCAATTACTGATGATCCATCGGGGATTTTGAAGAATTGGGTGGGTCCAAATGTGTGTAGTTACAAAGGAATTTTCTGCTCAAACTCTCAAGATTACATGGGCAACCCAACAGACCCAGTTGTTACAGGTATAGATCTCAATCATGCAAATCTTCAAGGCACTCTAGTAAAAGAACTATCTTATTTAACAGATGTGTCTCTCATTCATCTCAATACCAACAGATTTTCAGGTATAATTCCACAAACATTCAGAGATCTGTCTTCACTCGTTGAATTAGACCTTAGTAACAACCATTTCTCAGGTCCATTCCCTACTACAGTACTATTCATCCCAAATCTTCTTTATTTAGATCTCAGATTCAACAGTTTCACAGGCCCAATTCCCGAGGATCTGTTCAACAGAAAACTTGATGCTATTTTTCTTAATAATAACCAGTTTGATGGTGAACTACCTCAGAGTTTAGGGAATTCCCCTGCTTCAGTCATTAATTTTGCTAATAATAAGTTTACTGGCAACATTCCTTTTAGTTTAGGGTACATGGGTCCGAGAATTAAGGAGATTTTGTTCTTAAACAATGAGTTAAATGGTTGTATACCAGAAGGTGTGGGATTATGGACGGATTTG</genome_strand>
        <mrna_strand>CATGGAAGAAGCAGCACCAACTAAACCCACATCGTCTCTCATCAATGCTACAATCACATTTTGTGCAACCTTGCAAAAAAAAGAAAAGACTCTTGTTTGATCAAAAATGGGGGGAAGTTGCTTTCTGGTTTTGCTTCTTCAAATCATAGTTACTCAAGTTGTTGGTGTTGGTGTTGGTGTTGGCGTTGGCGTTGGTGTTGGTGTTGGACCTGGAGGTGTTTGGTTTGGTGGAGGGATCAACAGCCCAAACCCAGGAGCTGTCCCAAGTCAAAGTTCAGCATACACTGCTCTTCAAGCATGGAAATCTGCAATTACTGATGATCCATCGGGGATTTTGAAGAATTGGGTGGGTCCAAATGTGTGTAGTTACAAAGGAATTTTCTGCTCAAACTCTCAAGATTACATGGGCAACCCAACAGACCCAGTTGTTACAG..............................................................................................ATTTTCAGGTATAATTCCACAAACATTCAGAGATCTGTCTTCACTCGTTGAATTAGACCTTAGTAACAACCATTTCTCAGGTCCATTCCCTACTACAGTACTATTCATCCCAAATCTTCTTTATTTAGATCTCAGATTCAACAGTTTCACAGGCCCAATTCCCGAGGATCTGTTCAACAGAAAACTTGATGCTATTTTTCTTAATAATAACCAGTTTGATGGTGAACTACCTCAAAGTTTAGGGAATTCCCCTGCTTCAGTCATTAATTTTGCTAATAATAAGTTTACTGGCAACATTCCTTTTAGTTTAGGGGACATGGGTCCGAGAATTAAGGAGATTTTGTTCTTTAACAATGAGTTAAATGGTTGTATACCAGAAGGTGTGGGATTATGGACGGATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0074C08-dkn8r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E203264" ref_strand="+" ref_description="SGN-E203264 [cLEB-3-G20]">
      <seq>gcacgagcagcaccaactaaacccacatcgtctctcatcaatgctacaatcacattttgtgcaaccttgcaaaaaaaagaaaagactcttgtttgatcaaaaatggggggaagttgctttctggttttgcttcttcaaatcatagttactcaagttgttggtgttggtgttggtgttggcgttggcgttggtgttggtgttggacctggaggtgtttggtttggtggagggatcaacagcccaaacccaggagctgtcccaagtcaaagttcagcatacactgctcttcaagcatggaaatctgcaattactgatgatccatcggggattttgaagaattgggtgggtccaaatgtgtgtagttacaaaggaattttctgctcaaactctcaagattacatgggcaacccaacagacccagttgttacaggtatagatctcaatcatgcaaatcttcaaggcactctagtaaaagaactatcttatttaacagatgtgtctctcattcatctcaataccaacagattttcaggtataatttcacaaacattcagagatctgtcttcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0074C08-dkn8r/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0074C08.1" temp_strand="+" temp_description="C09HBa0074C08.1  AC234212.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0074C08 upload_account_name:spain (1 - 112940)">
        <position start="107429" stop="108596"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107728" g_stop="108296" g_length="569"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="569" r_length="569" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0074C08.1" gen_strand="+" ref_id="SGN-E203264" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0074C08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203264" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107728" e_stop="108296"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAGCAGCACCAACTAAACCCACATCGTCTCTCATCAATGCTACAATCACATTTTGTGCAACCTTGCAAAAAAAAGAAAAGACTCTTGTTTGATCAAAAATGGGGGGAAGTTGCTTTCTGGTTTTGCTTCTTCAAATCATAGTTACTCAAGTTGTTGGTGTTGGTGTTGGTGTTGGCGTTGGCGTTGGTGTTGGTGTTGGACCTGGAGGTGTTTGGTTTGGTGGAGGGATCAACAGCCCAAACCCAGGAGCTGTCCCAAGTCAAAGTTCAGCATACACTGCTCTTCAAGCATGGAAATCTGCAATTACTGATGATCCATCGGGGATTTTGAAGAATTGGGTGGGTCCAAATGTGTGTAGTTACAAAGGAATTTTCTGCTCAAACTCTCAAGATTACATGGGCAACCCAACAGACCCAGTTGTTACAGGTATAGATCTCAATCATGCAAATCTTCAAGGCACTCTAGTAAAAGAACTATCTTATTTAACAGATGTGTCTCTCATTCATCTCAATACCAACAGATTTTCAGGTATAATTCCACAAACATTCAGAGATCTGTCTTCACT</genome_strand>
        <mrna_strand>GCACGAGCAGCACCAACTAAACCCACATCGTCTCTCATCAATGCTACAATCACATTTTGTGCAACCTTGCAAAAAAAAGAAAAGACTCTTGTTTGATCAAAAATGGGGGGAAGTTGCTTTCTGGTTTTGCTTCTTCAAATCATAGTTACTCAAGTTGTTGGTGTTGGTGTTGGTGTTGGCGTTGGCGTTGGTGTTGGTGTTGGACCTGGAGGTGTTTGGTTTGGTGGAGGGATCAACAGCCCAAACCCAGGAGCTGTCCCAAGTCAAAGTTCAGCATACACTGCTCTTCAAGCATGGAAATCTGCAATTACTGATGATCCATCGGGGATTTTGAAGAATTGGGTGGGTCCAAATGTGTGTAGTTACAAAGGAATTTTCTGCTCAAACTCTCAAGATTACATGGGCAACCCAACAGACCCAGTTGTTACAGGTATAGATCTCAATCATGCAAATCTTCAAGGCACTCTAGTAAAAGAACTATCTTATTTAACAGATGTGTCTCTCATTCATCTCAATACCAACAGATTTTCAGGTATAATTTCACAAACATTCAGAGATCTGTCTTCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0074C08-dkn8r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E277148" ref_strand="+" ref_description="SGN-E277148 [cLEL-3-M14](-)">
      <seq>agctcatgggtttgggctgttgatccctccaccaaaccaaacacctccaggtccaacaccaacaccaacgccaacgccaacaccaacaccaacaccaacaacttgagtaactatgatttgaagaagcaaaaccagaaagcaacttccccccatttttgatcaaacaagagtcttttcggttgggtgcaaggttgcacaaaatgtgatcgtagcattgatgagagacgatgtgggattagttggtgctgctcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0074C08-dkn8r/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0074C08.1" temp_strand="-" temp_description="C09HBa0074C08.1  AC234212.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0074C08 upload_account_name:spain (1 - 112940)">
        <position start="108282" stop="107426"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107982" g_stop="107728" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="255" r_length="255" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0074C08.1" gen_strand="-" ref_id="SGN-E277148" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>255</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0074C08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277148" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107982" e_stop="107728"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTCCTGGGTTTGGGCTGTTGATCCCTCCACCAAACCAAACACCTCCAGGTCCAACACCAACACCAACGCCAACGCCAACACCAACACCAACACCAACAACTTGAGTAACTATGATTTGAAGAAGCAAAACCAGAAAGCAACTTCCCCCCATTTTTGATCAAACAAGAGTCTTTTCTTTTTTTTGCAAGGTTGCACAAAATGTGATTGTAGCATTGATGAGAGACGATGTGGGTTTAGTTGGTGCTGCTTCTTC</genome_strand>
        <mrna_strand>AGCTCATGGGTTTGGGCTGTTGATCCCTCCACCAAACCAAACACCTCCAGGTCCAACACCAACACCAACGCCAACGCCAACACCAACACCAACACCAACAACTTGAGTAACTATGATTTGAAGAAGCAAAACCAGAAAGCAACTTCCCCCCATTTTTGATCAAACAAGAGTCTTTTCGGTTGGGTGCAAGGTTGCACAAAATGTGATCGTAGCATTGATGAGAGACGATGTGGGATTAGTTGGTGCTGCTCGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0074C08-dkn8r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E333100" ref_strand="+" ref_description="SGN-E333100 [cTOD-19-B19]">
      <seq>aagaagcagcaccaactaaacccacatcgtctctcatcaatgctacaatcacattttgtgcaaccttgcaaaaaaaagaaaagactcttgtttgatcaaaaatggggggaagttgctttctggttttgcttcttcaaatcatagttactcaagttgttggtgttggtgttggtgttggcgttggcgttggtgttggtgttggacctggaggtgtttggtttggtggagggatcaacagcccaaacccaggagctgtcccaagtcaaagttcagcatacactgctcttcaagcatggaaatctgcaattactgatgatccatcggggattttgaagaattgggtgggtccaaatgtgtgtagttacaaaggaattttctgctcaaactctcaagattacatgggcaacccaacagacccagttgttacagattttcaggtataattccacaaacattcagagatctgtcttcactcgttgaattagaccttagtaacaaccatttctcaggtccattccctactacagtactattcatcccaaatcttctttatttagatctcagattcaacagtttcacaggcccaattcccgaggatctgttcaacagaaaacttgatgctatttttcttaataataaccagtttgatggtgaactacctcagagtttagggaatttcccctgctcagtcattaattttgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0074C08-dkn8r/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0074C08.1" temp_strand="+" temp_description="C09HBa0074C08.1  AC234212.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0074C08 upload_account_name:spain (1 - 112940)">
        <position start="107429" stop="108826"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107729" g_stop="108157" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="429" r_length="429" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108158" i_stop="108251" i_length="94">
            <donor d_prob="0.816" d_score="1.00"/>
            <acceptor a_prob="0.536" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108252" g_stop="108526" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="704" r_length="275" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0074C08.1" gen_strand="+" ref_id="SGN-E333100" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0074C08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107729" e_stop="108157"/>
          <exon e_start="108252" e_stop="108526"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGCAGCACCAACTAAACCCACATCGTCTCTCATCAATGCTACAATCACATTTTGTGCAACCTTGCAAAAAAAAGAAAAGACTCTTGTTTGATCAAAAATGGGGGGAAGTTGCTTTCTGGTTTTGCTTCTTCAAATCATAGTTACTCAAGTTGTTGGTGTTGGTGTTGGTGTTGGCGTTGGCGTTGGTGTTGGTGTTGGACCTGGAGGTGTTTGGTTTGGTGGAGGGATCAACAGCCCAAACCCAGGAGCTGTCCCAAGTCAAAGTTCAGCATACACTGCTCTTCAAGCATGGAAATCTGCAATTACTGATGATCCATCGGGGATTTTGAAGAATTGGGTGGGTCCAAATGTGTGTAGTTACAAAGGAATTTTCTGCTCAAACTCTCAAGATTACATGGGCAACCCAACAGACCCAGTTGTTACAGGTATAGATCTCAATCATGCAAATCTTCAAGGCACTCTAGTAAAAGAACTATCTTATTTAACAGATGTGTCTCTCATTCATCTCAATACCAACAGATTTTCAGGTATAATTCCACAAACATTCAGAGATCTGTCTTCACTCGTTGAATTAGACCTTAGTAACAACCATTTCTCAGGTCCATTCCCTACTACAGTACTATTCATCCCAAATCTTCTTTATTTAGATCTCAGATTCAACAGTTTCACAGGCCCAATTCCCGAGGATCTGTTCAACAGAAAACTTGATGCTATTTTTCTTAATAATAACCAGTTTGATGGTGAACTACCTCAGAGTTTAGGGAA-TTCCCCTGCTTCAGTCATTAATTTTGCTA</genome_strand>
        <mrna_strand>AAGAAGCAGCACCAACTAAACCCACATCGTCTCTCATCAATGCTACAATCACATTTTGTGCAACCTTGCAAAAAAAAGAAAAGACTCTTGTTTGATCAAAAATGGGGGGAAGTTGCTTTCTGGTTTTGCTTCTTCAAATCATAGTTACTCAAGTTGTTGGTGTTGGTGTTGGTGTTGGCGTTGGCGTTGGTGTTGGTGTTGGACCTGGAGGTGTTTGGTTTGGTGGAGGGATCAACAGCCCAAACCCAGGAGCTGTCCCAAGTCAAAGTTCAGCATACACTGCTCTTCAAGCATGGAAATCTGCAATTACTGATGATCCATCGGGGATTTTGAAGAATTGGGTGGGTCCAAATGTGTGTAGTTACAAAGGAATTTTCTGCTCAAACTCTCAAGATTACATGGGCAACCCAACAGACCCAGTTGTTACAG..............................................................................................ATTTTCAGGTATAATTCCACAAACATTCAGAGATCTGTCTTCACTCGTTGAATTAGACCTTAGTAACAACCATTTCTCAGGTCCATTCCCTACTACAGTACTATTCATCCCAAATCTTCTTTATTTAGATCTCAGATTCAACAGTTTCACAGGCCCAATTCCCGAGGATCTGTTCAACAGAAAACTTGATGCTATTTTTCTTAATAATAACCAGTTTGATGGTGAACTACCTCAGAGTTTAGGGAATTTCCCCTGC-TCAGTCATTAATTTTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0074C08-dkn8r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E326813" ref_strand="+" ref_description="SGN-E326813 [cTOC-25-C3]">
      <seq>accaactaaacccacatcgtctctcatcaatgctacaatcacattttgtgcaaccttgcaaaaaaaagaaaagactcttgtttgatcaaaaatggggggaagttgctttctggttttgcttcttcaaatcatagttactcaagttgttggtgttggtgttggtgttggcgttggcgttggtgttggtgttggacctggaggtgtttggtttggtggagggatcaacagcccaaacccaggagctgtcccaagtcaaagttcagcatacactgctcttcaagcatggaaatctgcaattactgatgatccatcggggattttgaagaattgggtgggtccaaatgtgtgtagttacaaaggaattttctgctcaaactctcaagattacatgggcaacccaacagacccagttgttacaggtatagatctcaatcatgcaaatcttcaaggcactctagtaaaagaactatcttatttaacagatgtgtctctcattcatctcaataccaacagattttcaggtataattccacaaacattcagagatctgtcttcactcgttgaattagaccttagtaacaaccatttctcaggtccattccctactacagtactattcatcccaaatcttctttatttagatctcagattcaacagtttcacaggcccaattcccgaggatctgttcaacagaaaacttgatgctatttttcttaataataccagtttgatggtgaactacctcagagtttagggaattccccctgctcagtcattaattttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0074C08-dkn8r/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0074C08.1" temp_strand="+" temp_description="C09HBa0074C08.1  AC234212.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0074C08 upload_account_name:spain (1 - 112940)">
        <position start="107439" stop="108824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107739" g_stop="108524" g_length="786"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="785" r_length="785" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0074C08.1" gen_strand="+" ref_id="SGN-E326813" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>786</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0074C08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326813" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107739" e_stop="108524"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAACTAAACCCACATCGTCTCTCATCAATGCTACAATCACATTTTGTGCAACCTTGCAAAAAAAAGAAAAGACTCTTGTTTGATCAAAAATGGGGGGAAGTTGCTTTCTGGTTTTGCTTCTTCAAATCATAGTTACTCAAGTTGTTGGTGTTGGTGTTGGTGTTGGCGTTGGCGTTGGTGTTGGTGTTGGACCTGGAGGTGTTTGGTTTGGTGGAGGGATCAACAGCCCAAACCCAGGAGCTGTCCCAAGTCAAAGTTCAGCATACACTGCTCTTCAAGCATGGAAATCTGCAATTACTGATGATCCATCGGGGATTTTGAAGAATTGGGTGGGTCCAAATGTGTGTAGTTACAAAGGAATTTTCTGCTCAAACTCTCAAGATTACATGGGCAACCCAACAGACCCAGTTGTTACAGGTATAGATCTCAATCATGCAAATCTTCAAGGCACTCTAGTAAAAGAACTATCTTATTTAACAGATGTGTCTCTCATTCATCTCAATACCAACAGATTTTCAGGTATAATTCCACAAACATTCAGAGATCTGTCTTCACTCGTTGAATTAGACCTTAGTAACAACCATTTCTCAGGTCCATTCCCTACTACAGTACTATTCATCCCAAATCTTCTTTATTTAGATCTCAGATTCAACAGTTTCACAGGCCCAATTCCCGAGGATCTGTTCAACAGAAAACTTGATGCTATTTTTCTTAATAATAACCAGTTTGATGGTGAACTACCTCAGAGTTTAGGGAATTCCCCTGCTTCAGTCATTAATTTTGC</genome_strand>
        <mrna_strand>ACCAACTAAACCCACATCGTCTCTCATCAATGCTACAATCACATTTTGTGCAACCTTGCAAAAAAAAGAAAAGACTCTTGTTTGATCAAAAATGGGGGGAAGTTGCTTTCTGGTTTTGCTTCTTCAAATCATAGTTACTCAAGTTGTTGGTGTTGGTGTTGGTGTTGGCGTTGGCGTTGGTGTTGGTGTTGGACCTGGAGGTGTTTGGTTTGGTGGAGGGATCAACAGCCCAAACCCAGGAGCTGTCCCAAGTCAAAGTTCAGCATACACTGCTCTTCAAGCATGGAAATCTGCAATTACTGATGATCCATCGGGGATTTTGAAGAATTGGGTGGGTCCAAATGTGTGTAGTTACAAAGGAATTTTCTGCTCAAACTCTCAAGATTACATGGGCAACCCAACAGACCCAGTTGTTACAGGTATAGATCTCAATCATGCAAATCTTCAAGGCACTCTAGTAAAAGAACTATCTTATTTAACAGATGTGTCTCTCATTCATCTCAATACCAACAGATTTTCAGGTATAATTCCACAAACATTCAGAGATCTGTCTTCACTCGTTGAATTAGACCTTAGTAACAACCATTTCTCAGGTCCATTCCCTACTACAGTACTATTCATCCCAAATCTTCTTTATTTAGATCTCAGATTCAACAGTTTCACAGGCCCAATTCCCGAGGATCTGTTCAACAGAAAACTTGATGCTATTTTTCTTAATAAT-ACCAGTTTGATGGTGAACTACCTCAGAGTTTAGGGAATTCCCCCTGCTCAGTCATTAATTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0074C08-dkn8r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E326847" ref_strand="+" ref_description="SGN-E326847 [cTOC-25-O1]">
      <seq>accaactaaacccacatcttctctcatcaatgctacaatcacattttgtgcaaccttgcaaaaaaaagaaaagactcttgtttgatcaaaaatggggggaagttgctttctggctttgcttcttcaaatcataattactcaagttgttggtgttggtgttggtgttggcgttgacgttagtgttggtgatggacctggacgtgtttggtttggtggagggatcaacatgccaaacccataagctgtcccaagtgaaagttcagcatacactgctcttcaagcatggaaatctgcaattactgatgatccatcggggattttgaagaattgggtggatccaaatgtgtgtagttacaaaggaattttctgctcaaactctcaagattacatgggcaacccaacagacccagttgttacaggtatagatctcaatcatgcaaatcttcaaggcactctagtaaaagaaatatcttatttaaacgatgtgtctctcattcgtctcaataccaacagattttcatgtataattccacaaacattcagagatctgtcttcactcgttgaattagaccttaataacaaccatttctcaggtccattccctactaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0074C08-dkn8r/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0074C08.1" temp_strand="+" temp_description="C09HBa0074C08.1  AC234212.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0074C08 upload_account_name:spain (1 - 112940)">
        <position start="107439" stop="108648"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107739" g_stop="108348" g_length="610"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="610" r_length="610" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0074C08.1" gen_strand="+" ref_id="SGN-E326847" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0074C08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326847" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107739" e_stop="108348"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAACTAAACCCACATCGTCTCTCATCAATGCTACAATCACATTTTGTGCAACCTTGCAAAAAAAAGAAAAGACTCTTGTTTGATCAAAAATGGGGGGAAGTTGCTTTCTGGTTTTGCTTCTTCAAATCATAGTTACTCAAGTTGTTGGTGTTGGTGTTGGTGTTGGCGTTGGCGTTGGTGTTGGTGTTGGACCTGGAGGTGTTTGGTTTGGTGGAGGGATCAACAGCCCAAACCCAGGAGCTGTCCCAAGTCAAAGTTCAGCATACACTGCTCTTCAAGCATGGAAATCTGCAATTACTGATGATCCATCGGGGATTTTGAAGAATTGGGTGGGTCCAAATGTGTGTAGTTACAAAGGAATTTTCTGCTCAAACTCTCAAGATTACATGGGCAACCCAACAGACCCAGTTGTTACAGGTATAGATCTCAATCATGCAAATCTTCAAGGCACTCTAGTAAAAGAACTATCTTATTTAACAGATGTGTCTCTCATTCATCTCAATACCAACAGATTTTCAGGTATAATTCCACAAACATTCAGAGATCTGTCTTCACTCGTTGAATTAGACCTTAGTAACAACCATTTCTCAGGTCCATTCCCTACTACA</genome_strand>
        <mrna_strand>ACCAACTAAACCCACATCTTCTCTCATCAATGCTACAATCACATTTTGTGCAACCTTGCAAAAAAAAGAAAAGACTCTTGTTTGATCAAAAATGGGGGGAAGTTGCTTTCTGGCTTTGCTTCTTCAAATCATAATTACTCAAGTTGTTGGTGTTGGTGTTGGTGTTGGCGTTGACGTTAGTGTTGGTGATGGACCTGGACGTGTTTGGTTTGGTGGAGGGATCAACATGCCAAACCCATAAGCTGTCCCAAGTGAAAGTTCAGCATACACTGCTCTTCAAGCATGGAAATCTGCAATTACTGATGATCCATCGGGGATTTTGAAGAATTGGGTGGATCCAAATGTGTGTAGTTACAAAGGAATTTTCTGCTCAAACTCTCAAGATTACATGGGCAACCCAACAGACCCAGTTGTTACAGGTATAGATCTCAATCATGCAAATCTTCAAGGCACTCTAGTAAAAGAAATATCTTATTTAAACGATGTGTCTCTCATTCGTCTCAATACCAACAGATTTTCATGTATAATTCCACAAACATTCAGAGATCTGTCTTCACTCGTTGAATTAGACCTTAATAACAACCATTTCTCAGGTCCATTCCCTACTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0074C08-dkn8r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E328226" ref_strand="+" ref_description="SGN-E328226 [cTOC-21-O24]">
      <seq>accaactaaacccacatcgtctctcatcaatgctacaatctcattttgtgcaaccttgcaaaaaaaagaaaagactcttgtttgatcaaaaatggggggaagttgctttctggttttgcttcttcaaatcatagttactcaagttgttggtgttggtgttggtgttggcgttggcgttggtgttggtgttggacctggaggtgtttggtttggtggagggatcaacagcccaaacccaggagctgtcccaagtcaaagttcagcatacactgctcttcaagcatggaaatctgcaattactgatgatccatcggggattttgaagaattgggtgggtccaaatgtgtgtagttacaaaggaattttctgctcaaactctcaagattacatgggcaacccaacagacccagttgttacaggtatagatctcaatcatgcaaatcttcaaggcactctagtaaaagaactatcttatttaacagatgtgtctctcattcatctcaataccaacagattttcaggtataattccacaaacattcagagatctgtcttcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0074C08-dkn8r/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0074C08.1" temp_strand="+" temp_description="C09HBa0074C08.1  AC234212.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0074C08 upload_account_name:spain (1 - 112940)">
        <position start="107439" stop="108595"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107739" g_stop="108295" g_length="557"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="557" r_length="557" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0074C08.1" gen_strand="+" ref_id="SGN-E328226" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0074C08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328226" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107739" e_stop="108295"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAACTAAACCCACATCGTCTCTCATCAATGCTACAATCACATTTTGTGCAACCTTGCAAAAAAAAGAAAAGACTCTTGTTTGATCAAAAATGGGGGGAAGTTGCTTTCTGGTTTTGCTTCTTCAAATCATAGTTACTCAAGTTGTTGGTGTTGGTGTTGGTGTTGGCGTTGGCGTTGGTGTTGGTGTTGGACCTGGAGGTGTTTGGTTTGGTGGAGGGATCAACAGCCCAAACCCAGGAGCTGTCCCAAGTCAAAGTTCAGCATACACTGCTCTTCAAGCATGGAAATCTGCAATTACTGATGATCCATCGGGGATTTTGAAGAATTGGGTGGGTCCAAATGTGTGTAGTTACAAAGGAATTTTCTGCTCAAACTCTCAAGATTACATGGGCAACCCAACAGACCCAGTTGTTACAGGTATAGATCTCAATCATGCAAATCTTCAAGGCACTCTAGTAAAAGAACTATCTTATTTAACAGATGTGTCTCTCATTCATCTCAATACCAACAGATTTTCAGGTATAATTCCACAAACATTCAGAGATCTGTCTTCAC</genome_strand>
        <mrna_strand>ACCAACTAAACCCACATCGTCTCTCATCAATGCTACAATCTCATTTTGTGCAACCTTGCAAAAAAAAGAAAAGACTCTTGTTTGATCAAAAATGGGGGGAAGTTGCTTTCTGGTTTTGCTTCTTCAAATCATAGTTACTCAAGTTGTTGGTGTTGGTGTTGGTGTTGGCGTTGGCGTTGGTGTTGGTGTTGGACCTGGAGGTGTTTGGTTTGGTGGAGGGATCAACAGCCCAAACCCAGGAGCTGTCCCAAGTCAAAGTTCAGCATACACTGCTCTTCAAGCATGGAAATCTGCAATTACTGATGATCCATCGGGGATTTTGAAGAATTGGGTGGGTCCAAATGTGTGTAGTTACAAAGGAATTTTCTGCTCAAACTCTCAAGATTACATGGGCAACCCAACAGACCCAGTTGTTACAGGTATAGATCTCAATCATGCAAATCTTCAAGGCACTCTAGTAAAAGAACTATCTTATTTAACAGATGTGTCTCTCATTCATCTCAATACCAACAGATTTTCAGGTATAATTCCACAAACATTCAGAGATCTGTCTTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0074C08-dkn8r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E312349" ref_strand="+" ref_description="SGN-E312349 [cTOA-5-B17]">
      <seq>accaactaaacccacatcgtctctcatcaatgctacaatcacattttgtgcaaccttgcaaaaaaaagaaaagactcttgtttgatcaaaaatggggggaagttgctttctggttttgcttcatcaaatcatagttactcaagttgttggtgttggtgttggtgttggcgttggcgttggtgttggtgttggacctggaggtgtttggtttggtggagggatcaacagcccaaacccaggagctgtcccaagtcaaagttcagcatacactgctcttcaagcatggaaatctgcaattactgatgatccatcggggattttgaagaattgggtgggtccaaatgtgtgtagttacaaaggaattttctgctcaaactctcaagattacatgggcaacccaacagacccagttgttacaggtatagatctcaatcatgcaaatcttcaaggcactctagtaaaagaactatcttatttaacagatgtgtctctcattcatctcaatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0074C08-dkn8r/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0074C08.1" temp_strand="+" temp_description="C09HBa0074C08.1  AC234212.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0074C08 upload_account_name:spain (1 - 112940)">
        <position start="107439" stop="108545"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107739" g_stop="108245" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="507" r_length="507" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0074C08.1" gen_strand="+" ref_id="SGN-E312349" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0074C08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312349" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107739" e_stop="108245"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAACTAAACCCACATCGTCTCTCATCAATGCTACAATCACATTTTGTGCAACCTTGCAAAAAAAAGAAAAGACTCTTGTTTGATCAAAAATGGGGGGAAGTTGCTTTCTGGTTTTGCTTCTTCAAATCATAGTTACTCAAGTTGTTGGTGTTGGTGTTGGTGTTGGCGTTGGCGTTGGTGTTGGTGTTGGACCTGGAGGTGTTTGGTTTGGTGGAGGGATCAACAGCCCAAACCCAGGAGCTGTCCCAAGTCAAAGTTCAGCATACACTGCTCTTCAAGCATGGAAATCTGCAATTACTGATGATCCATCGGGGATTTTGAAGAATTGGGTGGGTCCAAATGTGTGTAGTTACAAAGGAATTTTCTGCTCAAACTCTCAAGATTACATGGGCAACCCAACAGACCCAGTTGTTACAGGTATAGATCTCAATCATGCAAATCTTCAAGGCACTCTAGTAAAAGAACTATCTTATTTAACAGATGTGTCTCTCATTCATCTCAATAC</genome_strand>
        <mrna_strand>ACCAACTAAACCCACATCGTCTCTCATCAATGCTACAATCACATTTTGTGCAACCTTGCAAAAAAAAGAAAAGACTCTTGTTTGATCAAAAATGGGGGGAAGTTGCTTTCTGGTTTTGCTTCATCAAATCATAGTTACTCAAGTTGTTGGTGTTGGTGTTGGTGTTGGCGTTGGCGTTGGTGTTGGTGTTGGACCTGGAGGTGTTTGGTTTGGTGGAGGGATCAACAGCCCAAACCCAGGAGCTGTCCCAAGTCAAAGTTCAGCATACACTGCTCTTCAAGCATGGAAATCTGCAATTACTGATGATCCATCGGGGATTTTGAAGAATTGGGTGGGTCCAAATGTGTGTAGTTACAAAGGAATTTTCTGCTCAAACTCTCAAGATTACATGGGCAACCCAACAGACCCAGTTGTTACAGGTATAGATCTCAATCATGCAAATCTTCAAGGCACTCTAGTAAAAGAACTATCTTATTTAACAGATGTGTCTCTCATTCATCTCAATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0074C08-dkn8r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E302158" ref_strand="+" ref_description="SGN-E302158 [cLEW-19-D10]">
      <seq>aactaaacccacatcgtctctcatcaatgctacaatcacattttgtgcaaccttgcaaaaaaaagaaaagactcttgtttgatcaaaaatggggggaagttgctttctggttttgcttcttcaaatcatagttactcaagttgttggtgttggtgttggtgttggcgttggcgttggtgttggtgttggacctggaggtgtttggtttggtggagggatcaacagcccaaacccaggagctgtcccaagtcaaagttcagcatacactgctcttcaagcatggaaatctgcaattactgatgatccatcggggattttgaagaattgggtgggtccaaatgtgtgtagttacaaaggaattttctgctcaaactctcaagattacatgggcaacccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0074C08-dkn8r/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0074C08.1" temp_strand="+" temp_description="C09HBa0074C08.1  AC234212.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0074C08 upload_account_name:spain (1 - 112940)">
        <position start="107442" stop="108439"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107742" g_stop="108139" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="398" r_length="398" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0074C08.1" gen_strand="+" ref_id="SGN-E302158" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>398</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0074C08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302158" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107742" e_stop="108139"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTAAACCCACATCGTCTCTCATCAATGCTACAATCACATTTTGTGCAACCTTGCAAAAAAAAGAAAAGACTCTTGTTTGATCAAAAATGGGGGGAAGTTGCTTTCTGGTTTTGCTTCTTCAAATCATAGTTACTCAAGTTGTTGGTGTTGGTGTTGGTGTTGGCGTTGGCGTTGGTGTTGGTGTTGGACCTGGAGGTGTTTGGTTTGGTGGAGGGATCAACAGCCCAAACCCAGGAGCTGTCCCAAGTCAAAGTTCAGCATACACTGCTCTTCAAGCATGGAAATCTGCAATTACTGATGATCCATCGGGGATTTTGAAGAATTGGGTGGGTCCAAATGTGTGTAGTTACAAAGGAATTTTCTGCTCAAACTCTCAAGATTACATGGGCAACCCAA</genome_strand>
        <mrna_strand>AACTAAACCCACATCGTCTCTCATCAATGCTACAATCACATTTTGTGCAACCTTGCAAAAAAAAGAAAAGACTCTTGTTTGATCAAAAATGGGGGGAAGTTGCTTTCTGGTTTTGCTTCTTCAAATCATAGTTACTCAAGTTGTTGGTGTTGGTGTTGGTGTTGGCGTTGGCGTTGGTGTTGGTGTTGGACCTGGAGGTGTTTGGTTTGGTGGAGGGATCAACAGCCCAAACCCAGGAGCTGTCCCAAGTCAAAGTTCAGCATACACTGCTCTTCAAGCATGGAAATCTGCAATTACTGATGATCCATCGGGGATTTTGAAGAATTGGGTGGGTCCAAATGTGTGTAGTTACAAAGGAATTTTCTGCTCAAACTCTCAAGATTACATGGGCAACCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0074C08-dkn8r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E320238" ref_strand="+" ref_description="SGN-E320238 [cTOB-21-K20]">
      <seq>taaacccacatcgtctctcatcaatgctacaatcacattttgtgcaaccttgcaaaaaaaagaaaagactcttgtttgatcaaaaatggggggaagttgctttctggttttgcttcttcaaatcatagttactcaagttgttggtgttggtgttggtgttggcgttggcgttggtgttggtgttggacctggaggtgtttggtttggtggagggatcaacagcccaaacccaggagctgtcccaagtcaaagttcagcatacactgctcttcaagcatggaaatctgcaattactgatgatccatcggggattttgaagaattgggtgggtccaaatgtgtgtagttacaaaggaattttctgctcaaactctcaagattacatgggcaacccaacagacccagttgttacaggtatagatctcaatcatgcaaatcttcaaggcactctagtaaaagaactatcttatttaacagatgtgtctctcattcatctcaataccaacagattttcaggtataattccacaaacattcagagatctgtcttcactcgttgaattagaccttagtaacaaccatttctcaggtccattccctactacagtactattcatcccaaatcttctttatttagatctcagattcaacagtttcacaggcccaattcccgaagatctgttcaacagaaaacttgatgctatttttcttaataataaccagtttgatggtgaactacctcagagtttanggaattcccctgcttcagtcattaattttgctaataataagtttactggcaacattccttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0074C08-dkn8r/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0074C08.1" temp_strand="+" temp_description="C09HBa0074C08.1  AC234212.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0074C08 upload_account_name:spain (1 - 112940)">
        <position start="107445" stop="108854"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107745" g_stop="108554" g_length="810"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="810" r_length="810" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0074C08.1" gen_strand="+" ref_id="SGN-E320238" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>810</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0074C08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320238" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107745" e_stop="108554"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAACCCACATCGTCTCTCATCAATGCTACAATCACATTTTGTGCAACCTTGCAAAAAAAAGAAAAGACTCTTGTTTGATCAAAAATGGGGGGAAGTTGCTTTCTGGTTTTGCTTCTTCAAATCATAGTTACTCAAGTTGTTGGTGTTGGTGTTGGTGTTGGCGTTGGCGTTGGTGTTGGTGTTGGACCTGGAGGTGTTTGGTTTGGTGGAGGGATCAACAGCCCAAACCCAGGAGCTGTCCCAAGTCAAAGTTCAGCATACACTGCTCTTCAAGCATGGAAATCTGCAATTACTGATGATCCATCGGGGATTTTGAAGAATTGGGTGGGTCCAAATGTGTGTAGTTACAAAGGAATTTTCTGCTCAAACTCTCAAGATTACATGGGCAACCCAACAGACCCAGTTGTTACAGGTATAGATCTCAATCATGCAAATCTTCAAGGCACTCTAGTAAAAGAACTATCTTATTTAACAGATGTGTCTCTCATTCATCTCAATACCAACAGATTTTCAGGTATAATTCCACAAACATTCAGAGATCTGTCTTCACTCGTTGAATTAGACCTTAGTAACAACCATTTCTCAGGTCCATTCCCTACTACAGTACTATTCATCCCAAATCTTCTTTATTTAGATCTCAGATTCAACAGTTTCACAGGCCCAATTCCCGAGGATCTGTTCAACAGAAAACTTGATGCTATTTTTCTTAATAATAACCAGTTTGATGGTGAACTACCTCAGAGTTTAGGGAATTCCCCTGCTTCAGTCATTAATTTTGCTAATAATAAGTTTACTGGCAACATTCCTTT</genome_strand>
        <mrna_strand>TAAACCCACATCGTCTCTCATCAATGCTACAATCACATTTTGTGCAACCTTGCAAAAAAAAGAAAAGACTCTTGTTTGATCAAAAATGGGGGGAAGTTGCTTTCTGGTTTTGCTTCTTCAAATCATAGTTACTCAAGTTGTTGGTGTTGGTGTTGGTGTTGGCGTTGGCGTTGGTGTTGGTGTTGGACCTGGAGGTGTTTGGTTTGGTGGAGGGATCAACAGCCCAAACCCAGGAGCTGTCCCAAGTCAAAGTTCAGCATACACTGCTCTTCAAGCATGGAAATCTGCAATTACTGATGATCCATCGGGGATTTTGAAGAATTGGGTGGGTCCAAATGTGTGTAGTTACAAAGGAATTTTCTGCTCAAACTCTCAAGATTACATGGGCAACCCAACAGACCCAGTTGTTACAGGTATAGATCTCAATCATGCAAATCTTCAAGGCACTCTAGTAAAAGAACTATCTTATTTAACAGATGTGTCTCTCATTCATCTCAATACCAACAGATTTTCAGGTATAATTCCACAAACATTCAGAGATCTGTCTTCACTCGTTGAATTAGACCTTAGTAACAACCATTTCTCAGGTCCATTCCCTACTACAGTACTATTCATCCCAAATCTTCTTTATTTAGATCTCAGATTCAACAGTTTCACAGGCCCAATTCCCGAAGATCTGTTCAACAGAAAACTTGATGCTATTTTTCTTAATAATAACCAGTTTGATGGTGAACTACCTCAGAGTTTANGGAATTCCCCTGCTTCAGTCATTAATTTTGCTAATAATAAGTTTACTGGCAACATTCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0074C08-dkn8r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E461460" ref_strand="+" ref_description="SGN-E461460 [cPRO-8-F1]">
      <seq>catcgtctctcatcaatgctacaatcacattttgtgcaaccttgcaaaaaaacgaaacgcctcttgtttgaccaaaaatggggggaatttgctttgtggttttgctccttcaaatcatagttactgaagttgttggtgctggtgttggtgttggtgttggtgttggcgttggtgttggacctggaggtgtttggtttggtggagggatcaacagcccaagcccaggtgttgtcccaagtcaaaattcggcttacactactcttcaagcatggaaatctgcaatcactgatgatccaatggggattttgaagaattgggtgggtccaaatgtgtgtacttacagaggaattttctgcacaaactctcaagattacatgggaaacccaacagacccagttgttacaggtatagatctcaatcatgcaaatcttcaaggcactcttgttaaagaactgtcttacttaacagatatttctctcattcacctcaataccaacagattttcaggtataattccacaaacattcagagatctgtcttcacttgttgaattagaccttagtaacaaccatttctctggtccattccctactacagtactattcatcccaaatcttctttatttagatctcagattcaacagtttcacagggccaattccntgangatctgntcaacagaaaacttgatgctatttttctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0074C08-dkn8r/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0074C08.1" temp_strand="+" temp_description="C09HBa0074C08.1  AC234212.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0074C08 upload_account_name:spain (1 - 112940)">
        <position start="107453" stop="108754"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107753" g_stop="108454" g_length="702"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="703" r_length="703" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0074C08.1" gen_strand="+" ref_id="SGN-E461460" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0074C08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E461460" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107753" e_stop="108454"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCGTCTCTCATCAATGCTACAATCACATTTTGTGCAACCTTGCAAAAAAAAGAAAAGACTCTTGTTTGATCAAAAATGGGGGGAAGTTGCTTTCTGGTTTTGCTTCTTCAAATCATAGTTACTCAAGTTGTTGGTGTTGGTGTTGGTGTTGGCGTTGGCGTTGGTGTTGGTGTTGGACCTGGAGGTGTTTGGTTTGGTGGAGGGATCAACAGCCCAAACCCAGGAGCTGTCCCAAGTCAAAGTTCAGCATACACTGCTCTTCAAGCATGGAAATCTGCAATTACTGATGATCCATCGGGGATTTTGAAGAATTGGGTGGGTCCAAATGTGTGTAGTTACAAAGGAATTTTCTGCTCAAACTCTCAAGATTACATGGGCAACCCAACAGACCCAGTTGTTACAGGTATAGATCTCAATCATGCAAATCTTCAAGGCACTCTAGTAAAAGAACTATCTTATTTAACAGATGTGTCTCTCATTCATCTCAATACCAACAGATTTTCAGGTATAATTCCACAAACATTCAGAGATCTGTCTTCACTCGTTGAATTAGACCTTAGTAACAACCATTTCTCAGGTCCATTCCCTACTACAGTACTATTCATCCCAAATCTTCTTTATTTAGATCTCAGATTCAACAGTTTCACAGGCCCAATTCCC-GAGGATCTGTTCAACAGAAAACTTGATGCTATTTTTCTTA</genome_strand>
        <mrna_strand>CATCGTCTCTCATCAATGCTACAATCACATTTTGTGCAACCTTGCAAAAAAACGAAACGCCTCTTGTTTGACCAAAAATGGGGGGAATTTGCTTTGTGGTTTTGCTCCTTCAAATCATAGTTACTGAAGTTGTTGGTGCTGGTGTTGGTGTTGGTGTTGGTGTTGGCGTTGGTGTTGGACCTGGAGGTGTTTGGTTTGGTGGAGGGATCAACAGCCCAAGCCCAGGTGTTGTCCCAAGTCAAAATTCGGCTTACACTACTCTTCAAGCATGGAAATCTGCAATCACTGATGATCCAATGGGGATTTTGAAGAATTGGGTGGGTCCAAATGTGTGTACTTACAGAGGAATTTTCTGCACAAACTCTCAAGATTACATGGGAAACCCAACAGACCCAGTTGTTACAGGTATAGATCTCAATCATGCAAATCTTCAAGGCACTCTTGTTAAAGAACTGTCTTACTTAACAGATATTTCTCTCATTCACCTCAATACCAACAGATTTTCAGGTATAATTCCACAAACATTCAGAGATCTGTCTTCACTTGTTGAATTAGACCTTAGTAACAACCATTTCTCTGGTCCATTCCCTACTACAGTACTATTCATCCCAAATCTTCTTTATTTAGATCTCAGATTCAACAGTTTCACAGGGCCAATTCCNTGANGATCTGNTCAACAGAAAACTTGATGCTATTTTTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0074C08-dkn8r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E730252" ref_strand="+" ref_description="SGN-E730252 [LA23CC05]">
      <seq>accccttttaaagactcttgtttgatcaaaaatggggggaagttgctttctggttttgcttcttcaaatcatagttactcaagttgttggtgttggtgttggtgttggcgttggcgttggtgttggtgttggacctggaggtgtttggtttggtggagggatcaacagcccaaacccaggagctgtcccaagtcaaagttcagcatacactgctcttcaagcatggaaatctgcaattactgatgatccatcggggattttgaagaattgggtgggtccaaatgtgtgtagttacaaaggaattttctgctcaaactctcaagattacatgggcaacccaacagacccagttgttacaggtatagatctcaatcatgcaaatcttcaaggcactctagtaaaagaactatcttatttaacagatgtgtctctcattcatctcaataccaacagattttcaggtataattccacaaacattcaaagatctgtcttcactcgttgaattagaccttagtaacaaccatttctcaggtccattccctactacagtactattcatcccaaatcttctttatttagatcttagattcaacagtttcacaggcccaattcccgaggatctgttcaacagaaaacttgatgctatttttctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0074C08-dkn8r/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0074C08.1" temp_strand="+" temp_description="C09HBa0074C08.1  AC234212.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0074C08 upload_account_name:spain (1 - 112940)">
        <position start="107508" stop="108754"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107799" g_stop="108454" g_length="656"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="656" r_length="656" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0074C08.1" gen_strand="+" ref_id="SGN-E730252" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0074C08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730252" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107799" e_stop="108454"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAGAAAAGACTCTTGTTTGATCAAAAATGGGGGGAAGTTGCTTTCTGGTTTTGCTTCTTCAAATCATAGTTACTCAAGTTGTTGGTGTTGGTGTTGGTGTTGGCGTTGGCGTTGGTGTTGGTGTTGGACCTGGAGGTGTTTGGTTTGGTGGAGGGATCAACAGCCCAAACCCAGGAGCTGTCCCAAGTCAAAGTTCAGCATACACTGCTCTTCAAGCATGGAAATCTGCAATTACTGATGATCCATCGGGGATTTTGAAGAATTGGGTGGGTCCAAATGTGTGTAGTTACAAAGGAATTTTCTGCTCAAACTCTCAAGATTACATGGGCAACCCAACAGACCCAGTTGTTACAGGTATAGATCTCAATCATGCAAATCTTCAAGGCACTCTAGTAAAAGAACTATCTTATTTAACAGATGTGTCTCTCATTCATCTCAATACCAACAGATTTTCAGGTATAATTCCACAAACATTCAGAGATCTGTCTTCACTCGTTGAATTAGACCTTAGTAACAACCATTTCTCAGGTCCATTCCCTACTACAGTACTATTCATCCCAAATCTTCTTTATTTAGATCTCAGATTCAACAGTTTCACAGGCCCAATTCCCGAGGATCTGTTCAACAGAAAACTTGATGCTATTTTTCTTA</genome_strand>
        <mrna_strand>ACCCCTTTTAAAGACTCTTGTTTGATCAAAAATGGGGGGAAGTTGCTTTCTGGTTTTGCTTCTTCAAATCATAGTTACTCAAGTTGTTGGTGTTGGTGTTGGTGTTGGCGTTGGCGTTGGTGTTGGTGTTGGACCTGGAGGTGTTTGGTTTGGTGGAGGGATCAACAGCCCAAACCCAGGAGCTGTCCCAAGTCAAAGTTCAGCATACACTGCTCTTCAAGCATGGAAATCTGCAATTACTGATGATCCATCGGGGATTTTGAAGAATTGGGTGGGTCCAAATGTGTGTAGTTACAAAGGAATTTTCTGCTCAAACTCTCAAGATTACATGGGCAACCCAACAGACCCAGTTGTTACAGGTATAGATCTCAATCATGCAAATCTTCAAGGCACTCTAGTAAAAGAACTATCTTATTTAACAGATGTGTCTCTCATTCATCTCAATACCAACAGATTTTCAGGTATAATTCCACAAACATTCAAAGATCTGTCTTCACTCGTTGAATTAGACCTTAGTAACAACCATTTCTCAGGTCCATTCCCTACTACAGTACTATTCATCCCAAATCTTCTTTATTTAGATCTTAGATTCAACAGTTTCACAGGCCCAATTCCCGAGGATCTGTTCAACAGAAAACTTGATGCTATTTTTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0074C08-dkn8r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E395197" ref_strand="+" ref_description="SGN-E395197 [TUS-41-M18]">
      <seq>cttgtttgatcaaaaatggggggaagttgctttctggttttgcttcttcaaatcatagttactcaagttgttggtgttggtgttggtgttggcgttggcgttggtgttggtgttggacctggaggtgtttggtttggtggagggatcaacagcccaaacccaggagctgtcccaagtcaaagttcaacatacactgctcttcaaccatggaaatctgcaattactgatgatccatcggggattttgaagaattgggtgggtccaaatgtgtgtacttacaaaggaattttctgctcaaactctcaagattacatgggcaacccaacagacccaattgttacaggtataaatctcaatcatgcagatcttcaaggcactctagtaaaagaactatcttatttaacatatgtgtctctcattcatctcaataccaaaagattttcaggtaataattccacaaacattcaaagatctgtctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0074C08-dkn8r/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0074C08.1" temp_strand="+" temp_description="C09HBa0074C08.1  AC234212.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0074C08 upload_account_name:spain (1 - 112940)">
        <position start="107515" stop="108592"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107815" g_stop="108292" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="479" r_length="479" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0074C08.1" gen_strand="+" ref_id="SGN-E395197" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0074C08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E395197" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107815" e_stop="108292"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGTTTGATCAAAAATGGGGGGAAGTTGCTTTCTGGTTTTGCTTCTTCAAATCATAGTTACTCAAGTTGTTGGTGTTGGTGTTGGTGTTGGCGTTGGCGTTGGTGTTGGTGTTGGACCTGGAGGTGTTTGGTTTGGTGGAGGGATCAACAGCCCAAACCCAGGAGCTGTCCCAAGTCAAAGTTCAGCATACACTGCTCTTCAAGCATGGAAATCTGCAATTACTGATGATCCATCGGGGATTTTGAAGAATTGGGTGGGTCCAAATGTGTGTAGTTACAAAGGAATTTTCTGCTCAAACTCTCAAGATTACATGGGCAACCCAACAGACCCAGTTGTTACAGGTATAGATCTCAATCATGCAAATCTTCAAGGCACTCTAGTAAAAGAACTATCTTATTTAACAGATGTGTCTCTCATTCATCTCAATACCAACAGATTTTCAGGT-ATAATTCCACAAACATTCAGAGATCTGTCTT</genome_strand>
        <mrna_strand>CTTGTTTGATCAAAAATGGGGGGAAGTTGCTTTCTGGTTTTGCTTCTTCAAATCATAGTTACTCAAGTTGTTGGTGTTGGTGTTGGTGTTGGCGTTGGCGTTGGTGTTGGTGTTGGACCTGGAGGTGTTTGGTTTGGTGGAGGGATCAACAGCCCAAACCCAGGAGCTGTCCCAAGTCAAAGTTCAACATACACTGCTCTTCAACCATGGAAATCTGCAATTACTGATGATCCATCGGGGATTTTGAAGAATTGGGTGGGTCCAAATGTGTGTACTTACAAAGGAATTTTCTGCTCAAACTCTCAAGATTACATGGGCAACCCAACAGACCCAATTGTTACAGGTATAAATCTCAATCATGCAGATCTTCAAGGCACTCTAGTAAAAGAACTATCTTATTTAACATATGTGTCTCTCATTCATCTCAATACCAAAAGATTTTCAGGTAATAATTCCACAAACATTCAAAGATCTGTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0074C08-dkn8r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E305239" ref_strand="+" ref_description="SGN-E305239 [cLEX-15-A4]">
      <seq>tcaaaaatggggggaagttgctttctggttttgcttcttcaaatcatagttactcaagttgttggtgttggtgttggtgttggcgttggcgttggtgttggtgttggacctggaggtgtttggtttggtggagggatcaacagcccaaacccaggagctgtcccaagtcaaagttcagcatacactgctcttcaagcatggaaatctgcaattactgatgatccatcggggattttgaagaattgggtgggtccaaatgtgtgtagttacaaaggaattttctgctcaaactctcaagattacatgggcaacccaacagacccagttgttacaggtatagatctcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0074C08-dkn8r/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0074C08.1" temp_strand="+" temp_description="C09HBa0074C08.1  AC234212.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0074C08 upload_account_name:spain (1 - 112940)">
        <position start="107524" stop="108471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107824" g_stop="108171" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="348" r_length="348" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0074C08.1" gen_strand="+" ref_id="SGN-E305239" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>348</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0074C08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305239" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107824" e_stop="108171"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAAATGGGGGGAAGTTGCTTTCTGGTTTTGCTTCTTCAAATCATAGTTACTCAAGTTGTTGGTGTTGGTGTTGGTGTTGGCGTTGGCGTTGGTGTTGGTGTTGGACCTGGAGGTGTTTGGTTTGGTGGAGGGATCAACAGCCCAAACCCAGGAGCTGTCCCAAGTCAAAGTTCAGCATACACTGCTCTTCAAGCATGGAAATCTGCAATTACTGATGATCCATCGGGGATTTTGAAGAATTGGGTGGGTCCAAATGTGTGTAGTTACAAAGGAATTTTCTGCTCAAACTCTCAAGATTACATGGGCAACCCAACAGACCCAGTTGTTACAGGTATAGATCTCAAT</genome_strand>
        <mrna_strand>TCAAAAATGGGGGGAAGTTGCTTTCTGGTTTTGCTTCTTCAAATCATAGTTACTCAAGTTGTTGGTGTTGGTGTTGGTGTTGGCGTTGGCGTTGGTGTTGGTGTTGGACCTGGAGGTGTTTGGTTTGGTGGAGGGATCAACAGCCCAAACCCAGGAGCTGTCCCAAGTCAAAGTTCAGCATACACTGCTCTTCAAGCATGGAAATCTGCAATTACTGATGATCCATCGGGGATTTTGAAGAATTGGGTGGGTCCAAATGTGTGTAGTTACAAAGGAATTTTCTGCTCAAACTCTCAAGATTACATGGGCAACCCAACAGACCCAGTTGTTACAGGTATAGATCTCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0074C08-dkn8r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E389866" ref_strand="+" ref_description="SGN-E389866 [TUS-4-J3]">
      <seq>cttcttcaatcatagttactcaagttgttggtgttggtgttggtgttggcgttggcgttggtcttggtgttggacctggaggtgtttggtttggtggagggatcaacagcccaaacccaggagctgtcccaagtcaaagttcagcatacactgctcttcaagcatggaaatctgcaattactgatgatccatcggggattttgaagaattgggtgggtccaaatgtgtgtagttacaaaggaattttctgctcaaactctcaagattacatgggcaacccaacagacccagttgttacaggtatagatctcaatcatgcaaatcttcaaggcactctagtaaaagaactatcttatttaacagatgtgtctctcattcatctcaataccaacagattttcaggtataattccacaaacattcagagatctgtcttcactcgttgaattagaccttagtaacaaccatttctcaggtccattccctactacagtactattcatcccaaatcttctttatttagatctcagattcaacagtttcacaggcccaattcccgaggatctgttcaacagaaaacttgatgctatttttcttaataataaccagtttgatggtgaactacctcagagtttagggaattcccctgcttcagtcattaattttgctaataataagtttactggcaacattccttttagtttagggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0074C08-dkn8r/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0074C08.1" temp_strand="+" temp_description="C09HBa0074C08.1  AC234212.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0074C08 upload_account_name:spain (1 - 112940)">
        <position start="107557" stop="108865"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107857" g_stop="108565" g_length="709"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="708" r_length="708" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0074C08.1" gen_strand="+" ref_id="SGN-E389866" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0074C08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E389866" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107857" e_stop="108565"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTCAAATCATAGTTACTCAAGTTGTTGGTGTTGGTGTTGGTGTTGGCGTTGGCGTTGGTGTTGGTGTTGGACCTGGAGGTGTTTGGTTTGGTGGAGGGATCAACAGCCCAAACCCAGGAGCTGTCCCAAGTCAAAGTTCAGCATACACTGCTCTTCAAGCATGGAAATCTGCAATTACTGATGATCCATCGGGGATTTTGAAGAATTGGGTGGGTCCAAATGTGTGTAGTTACAAAGGAATTTTCTGCTCAAACTCTCAAGATTACATGGGCAACCCAACAGACCCAGTTGTTACAGGTATAGATCTCAATCATGCAAATCTTCAAGGCACTCTAGTAAAAGAACTATCTTATTTAACAGATGTGTCTCTCATTCATCTCAATACCAACAGATTTTCAGGTATAATTCCACAAACATTCAGAGATCTGTCTTCACTCGTTGAATTAGACCTTAGTAACAACCATTTCTCAGGTCCATTCCCTACTACAGTACTATTCATCCCAAATCTTCTTTATTTAGATCTCAGATTCAACAGTTTCACAGGCCCAATTCCCGAGGATCTGTTCAACAGAAAACTTGATGCTATTTTTCTTAATAATAACCAGTTTGATGGTGAACTACCTCAGAGTTTAGGGAATTCCCCTGCTTCAGTCATTAATTTTGCTAATAATAAGTTTACTGGCAACATTCCTTTTAGTTTAGGGT</genome_strand>
        <mrna_strand>CTTCTTC-AATCATAGTTACTCAAGTTGTTGGTGTTGGTGTTGGTGTTGGCGTTGGCGTTGGTCTTGGTGTTGGACCTGGAGGTGTTTGGTTTGGTGGAGGGATCAACAGCCCAAACCCAGGAGCTGTCCCAAGTCAAAGTTCAGCATACACTGCTCTTCAAGCATGGAAATCTGCAATTACTGATGATCCATCGGGGATTTTGAAGAATTGGGTGGGTCCAAATGTGTGTAGTTACAAAGGAATTTTCTGCTCAAACTCTCAAGATTACATGGGCAACCCAACAGACCCAGTTGTTACAGGTATAGATCTCAATCATGCAAATCTTCAAGGCACTCTAGTAAAAGAACTATCTTATTTAACAGATGTGTCTCTCATTCATCTCAATACCAACAGATTTTCAGGTATAATTCCACAAACATTCAGAGATCTGTCTTCACTCGTTGAATTAGACCTTAGTAACAACCATTTCTCAGGTCCATTCCCTACTACAGTACTATTCATCCCAAATCTTCTTTATTTAGATCTCAGATTCAACAGTTTCACAGGCCCAATTCCCGAGGATCTGTTCAACAGAAAACTTGATGCTATTTTTCTTAATAATAACCAGTTTGATGGTGAACTACCTCAGAGTTTAGGGAATTCCCCTGCTTCAGTCATTAATTTTGCTAATAATAAGTTTACTGGCAACATTCCTTTTAGTTTAGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0074C08-dkn8r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E241134" ref_strand="+" ref_description="SGN-E241134 [cLED-26-H7]">
      <seq>ttcttcaaatcatagttactcaagttgttggtgttggtgttggtgttggcgttggcgttggtgttggtgttggacctggaggtgtttggtttggtggagggatcaacagcccaaacccaggagctgtcccaagtcaaagttcagcatacactgctcttcaagcatggaaatctgcaattactgatgatccatcggggattttgaagaattgggtgggtccaaatgtgtgtagttacaaaggaattttctgctcaaactctcaagattacatgggcaacccaacagacccagttgttacaggtatagatctcaatcatgcaaatcttcaaggcactctagtaaaagaactatcttatttaacagatgtgtctctcattcatctcaataccaacagattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0074C08-dkn8r/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0074C08.1" temp_strand="+" temp_description="C09HBa0074C08.1  AC234212.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0074C08 upload_account_name:spain (1 - 112940)">
        <position start="107558" stop="108555"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107858" g_stop="108255" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="398" r_length="398" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0074C08.1" gen_strand="+" ref_id="SGN-E241134" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>398</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0074C08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241134" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107858" e_stop="108255"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCAAATCATAGTTACTCAAGTTGTTGGTGTTGGTGTTGGTGTTGGCGTTGGCGTTGGTGTTGGTGTTGGACCTGGAGGTGTTTGGTTTGGTGGAGGGATCAACAGCCCAAACCCAGGAGCTGTCCCAAGTCAAAGTTCAGCATACACTGCTCTTCAAGCATGGAAATCTGCAATTACTGATGATCCATCGGGGATTTTGAAGAATTGGGTGGGTCCAAATGTGTGTAGTTACAAAGGAATTTTCTGCTCAAACTCTCAAGATTACATGGGCAACCCAACAGACCCAGTTGTTACAGGTATAGATCTCAATCATGCAAATCTTCAAGGCACTCTAGTAAAAGAACTATCTTATTTAACAGATGTGTCTCTCATTCATCTCAATACCAACAGATTT</genome_strand>
        <mrna_strand>TTCTTCAAATCATAGTTACTCAAGTTGTTGGTGTTGGTGTTGGTGTTGGCGTTGGCGTTGGTGTTGGTGTTGGACCTGGAGGTGTTTGGTTTGGTGGAGGGATCAACAGCCCAAACCCAGGAGCTGTCCCAAGTCAAAGTTCAGCATACACTGCTCTTCAAGCATGGAAATCTGCAATTACTGATGATCCATCGGGGATTTTGAAGAATTGGGTGGGTCCAAATGTGTGTAGTTACAAAGGAATTTTCTGCTCAAACTCTCAAGATTACATGGGCAACCCAACAGACCCAGTTGTTACAGGTATAGATCTCAATCATGCAAATCTTCAAGGCACTCTAGTAAAAGAACTATCTTATTTAACAGATGTGTCTCTCATTCATCTCAATACCAACAGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0074C08-dkn8r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E232879" ref_strand="+" ref_description="SGN-E232879 [cLED-8-K12]">
      <seq>ttcttcaaatcatagttactcaagttgttggtgttggtgttggtgttggcgttggcgttggtgttggtgttggacctgaaggtgtttggtttggtggagggatcaacagcccaaacccaggagctgacccaagtcaaagttcatcatacactgctcttcaagcatggaaatctgcaattactgatgatccatcgaggattttgaataattgggtgggtccaaatgtgcgtagttacaaaggaattttctgctcaaactctcaagattacattggcaacccaacagacccagttgttacagggatagatctcaatcatgcagatcttcaaggcactctagtcaaagaactatcttattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0074C08-dkn8r/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0074C08.1" temp_strand="+" temp_description="C09HBa0074C08.1  AC234212.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0074C08 upload_account_name:spain (1 - 112940)">
        <position start="107558" stop="108516"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107858" g_stop="108216" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="359" r_length="359" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0074C08.1" gen_strand="+" ref_id="SGN-E232879" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0074C08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E232879" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107858" e_stop="108216"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCAAATCATAGTTACTCAAGTTGTTGGTGTTGGTGTTGGTGTTGGCGTTGGCGTTGGTGTTGGTGTTGGACCTGGAGGTGTTTGGTTTGGTGGAGGGATCAACAGCCCAAACCCAGGAGCTGTCCCAAGTCAAAGTTCAGCATACACTGCTCTTCAAGCATGGAAATCTGCAATTACTGATGATCCATCGGGGATTTTGAAGAATTGGGTGGGTCCAAATGTGTGTAGTTACAAAGGAATTTTCTGCTCAAACTCTCAAGATTACATGGGCAACCCAACAGACCCAGTTGTTACAGGTATAGATCTCAATCATGCAAATCTTCAAGGCACTCTAGTAAAAGAACTATCTTATTTA</genome_strand>
        <mrna_strand>TTCTTCAAATCATAGTTACTCAAGTTGTTGGTGTTGGTGTTGGTGTTGGCGTTGGCGTTGGTGTTGGTGTTGGACCTGAAGGTGTTTGGTTTGGTGGAGGGATCAACAGCCCAAACCCAGGAGCTGACCCAAGTCAAAGTTCATCATACACTGCTCTTCAAGCATGGAAATCTGCAATTACTGATGATCCATCGAGGATTTTGAATAATTGGGTGGGTCCAAATGTGCGTAGTTACAAAGGAATTTTCTGCTCAAACTCTCAAGATTACATTGGCAACCCAACAGACCCAGTTGTTACAGGGATAGATCTCAATCATGCAGATCTTCAAGGCACTCTAGTCAAAGAACTATCTTATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0074C08-dkn8r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E255776" ref_strand="+" ref_description="SGN-E255776 [cLEG-36-N8]">
      <seq>tggtgttggcgttggcgttggtgttggtgttggacctggaggtgtttggtttggtggagggatcaacagcccaaacccaggagctgtcccaagtcaaagttcagcatacactgctcttcaagcatggaaatctgcaattactgatgatccatcggggattttgaagaattgggtgggtccaaatgtgtgtagttacaaaggaattttctgctcaaactctcaagattacatgggcaacccaacagacccagttgttacaggtatagatctcaatcatgcaaatcttcaaggcactctagtaaaagaactatcttatttaacagatgtgtctctcattcatctcaataccaacagattttcaggtataattccacaaacattcagagatctgtcttcactcgttgaattagaccttagtaacaaccatttctcaggtccattccctactacagtactattcatcccaaatcttctttatttagatctcagattcaacagtttcacaggcccaattcccgaggatctgttcaacagaaaacttgatgctatttttcttaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0074C08-dkn8r/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0074C08.1" temp_strand="+" temp_description="C09HBa0074C08.1  AC234212.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0074C08 upload_account_name:spain (1 - 112940)">
        <position start="107598" stop="108756"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107898" g_stop="108456" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0074C08.1" gen_strand="+" ref_id="SGN-E255776" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0074C08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E255776" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107898" e_stop="108456"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGTTGGCGTTGGCGTTGGTGTTGGTGTTGGACCTGGAGGTGTTTGGTTTGGTGGAGGGATCAACAGCCCAAACCCAGGAGCTGTCCCAAGTCAAAGTTCAGCATACACTGCTCTTCAAGCATGGAAATCTGCAATTACTGATGATCCATCGGGGATTTTGAAGAATTGGGTGGGTCCAAATGTGTGTAGTTACAAAGGAATTTTCTGCTCAAACTCTCAAGATTACATGGGCAACCCAACAGACCCAGTTGTTACAGGTATAGATCTCAATCATGCAAATCTTCAAGGCACTCTAGTAAAAGAACTATCTTATTTAACAGATGTGTCTCTCATTCATCTCAATACCAACAGATTTTCAGGTATAATTCCACAAACATTCAGAGATCTGTCTTCACTCGTTGAATTAGACCTTAGTAACAACCATTTCTCAGGTCCATTCCCTACTACAGTACTATTCATCCCAAATCTTCTTTATTTAGATCTCAGATTCAACAGTTTCACAGGCCCAATTCCCGAGGATCTGTTCAACAGAAAACTTGATGCTATTTTTCTTAAT</genome_strand>
        <mrna_strand>TGGTGTTGGCGTTGGCGTTGGTGTTGGTGTTGGACCTGGAGGTGTTTGGTTTGGTGGAGGGATCAACAGCCCAAACCCAGGAGCTGTCCCAAGTCAAAGTTCAGCATACACTGCTCTTCAAGCATGGAAATCTGCAATTACTGATGATCCATCGGGGATTTTGAAGAATTGGGTGGGTCCAAATGTGTGTAGTTACAAAGGAATTTTCTGCTCAAACTCTCAAGATTACATGGGCAACCCAACAGACCCAGTTGTTACAGGTATAGATCTCAATCATGCAAATCTTCAAGGCACTCTAGTAAAAGAACTATCTTATTTAACAGATGTGTCTCTCATTCATCTCAATACCAACAGATTTTCAGGTATAATTCCACAAACATTCAGAGATCTGTCTTCACTCGTTGAATTAGACCTTAGTAACAACCATTTCTCAGGTCCATTCCCTACTACAGTACTATTCATCCCAAATCTTCTTTATTTAGATCTCAGATTCAACAGTTTCACAGGCCCAATTCCCGAGGATCTGTTCAACAGAAAACTTGATGCTATTTTTCTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0074C08-dkn8r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E301354" ref_strand="+" ref_description="SGN-E301354 [cLEW-24-F3]">
      <seq>ctcgtgcgcacgaagtacatgggcaacccaacagacccagttgttacaggtatagatctcaatcatgcaaatcttcaaggcactctagtaaaagaactatcttatttaacagatgtgtctctcattcatctcaataccaacagattttcaggtataattccacaaacattcagagatctgtcttcactcgttgaattagaccttagtaacaaccatttctcaagtccattccctactacagtactattcatcccaaatcttctttatttagatctcagattcaacagtttcacaggcccaattcccgaggatctgttcaacagaaaacttgatgctatttttcttaataataaccagtttgatggtgaactacctcagagtttaaggaattcccctgcttcagtcattaattttgctaataataagtttactggcaacattccttttagtttaaggtacatgggtccgagaattaaagagattttgttcttaaacaatgagttaaatggttgtataccagaaagtgtgggattatggacggatttgcaagtattagatgtaagtttcaattcactgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0074C08-dkn8r/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0074C08.1" temp_strand="+" temp_description="C09HBa0074C08.1  AC234212.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0074C08 upload_account_name:spain (1 - 112940)">
        <position start="107816" stop="108986"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108108" g_stop="108686" g_length="579"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="578" r_length="578" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0074C08.1" gen_strand="+" ref_id="SGN-E301354" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0074C08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301354" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108108" e_stop="108686"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAAACTCTCAAGATTACATGGGCAACCCAACAGACCCAGTTGTTACAGGTATAGATCTCAATCATGCAAATCTTCAAGGCACTCTAGTAAAAGAACTATCTTATTTAACAGATGTGTCTCTCATTCATCTCAATACCAACAGATTTTCAGGTATAATTCCACAAACATTCAGAGATCTGTCTTCACTCGTTGAATTAGACCTTAGTAACAACCATTTCTCAGGTCCATTCCCTACTACAGTACTATTCATCCCAAATCTTCTTTATTTAGATCTCAGATTCAACAGTTTCACAGGCCCAATTCCCGAGGATCTGTTCAACAGAAAACTTGATGCTATTTTTCTTAATAATAACCAGTTTGATGGTGAACTACCTCAGAGTTTAGGGAATTCCCCTGCTTCAGTCATTAATTTTGCTAATAATAAGTTTACTGGCAACATTCCTTTTAGTTTAGGGTACATGGGTCCGAGAATTAAGGAGATTTTGTTCTTAAACAATGAGTTAAATGGTTGTATACCAGAAGGTGTGGGATTATGGACGGATTTGCAAGTATTAGATGTAAGTTTCAATTCACTGAT</genome_strand>
        <mrna_strand>CTCGTGCGCACGA-AGTACATGGGCAACCCAACAGACCCAGTTGTTACAGGTATAGATCTCAATCATGCAAATCTTCAAGGCACTCTAGTAAAAGAACTATCTTATTTAACAGATGTGTCTCTCATTCATCTCAATACCAACAGATTTTCAGGTATAATTCCACAAACATTCAGAGATCTGTCTTCACTCGTTGAATTAGACCTTAGTAACAACCATTTCTCAAGTCCATTCCCTACTACAGTACTATTCATCCCAAATCTTCTTTATTTAGATCTCAGATTCAACAGTTTCACAGGCCCAATTCCCGAGGATCTGTTCAACAGAAAACTTGATGCTATTTTTCTTAATAATAACCAGTTTGATGGTGAACTACCTCAGAGTTTAAGGAATTCCCCTGCTTCAGTCATTAATTTTGCTAATAATAAGTTTACTGGCAACATTCCTTTTAGTTTAAGGTACATGGGTCCGAGAATTAAAGAGATTTTGTTCTTAAACAATGAGTTAAATGGTTGTATACCAGAAAGTGTGGGATTATGGACGGATTTGCAAGTATTAGATGTAAGTTTCAATTCACTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0074C08-dkn8r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E301262" ref_strand="+" ref_description="SGN-E301262 [cLEW-24-F15]">
      <seq>tcccccggctgcagaattcgcacgaggcctcgtgcgcactatgtcatgggcaacccaacagacccatggggcaggtatagaggggaatcatgcaaatcttcaaggcactctactaaaagaactatcttatttaacagatgtgtctctcattcatctcaataccaacagattttcaggtataattccacaaacattcagagatctgtcttcactctttgaattagaccttagtaacaaccatttctcaagtccattccctactacagtactattcatcccaaatcttctttatttagatctcagattcaacagtttcacaggcccaattcccgaggatctgttcaacagaaaacttgatgctatttttcttaataataaccagtttgatggtgaactacctcagagtttaaggaattcccctgcttcagtcattaattttgctaataataagtttactggcaacattccttttagtttagggtacatgggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0074C08-dkn8r/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0074C08.1" temp_strand="+" temp_description="C09HBa0074C08.1  AC234212.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0074C08 upload_account_name:spain (1 - 112940)">
        <position start="107816" stop="108873"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108127" g_stop="108573" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="490" r_length="445" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0074C08.1" gen_strand="+" ref_id="SGN-E301262" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="0.912" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0074C08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301262" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108127" e_stop="108573"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGGCAACCCAACAGACCCAGTTGTTACAGGTATAGATCTCAATCATGCAAATCTTCAAGGCACTCTAGTAAAAGAACTATCTTATTTAACAGATGTGTCTCTCATTCATCTCAATACCAACAGATTTTCAGGTATAATTCCACAAACATTCAGAGATCTGTCTTCACTCGTTGAATTAGACCTTAGTAACAACCATTTCTCAGGTCCATTCCCTACTACAGTACTATTCATCCCAAATCTTCTTTATTTAGATCTCAGATTCAACAGTTTCACAGGCCCAATTCCCGAGGATCTGTTCAACAGAAAACTTGATGCTATTTTTCTTAATAATAACCAGTTTGATGGTGAACTACCTCAGAGTTTAGGGAATTCCCCTGCTTCAGTCATTAATTTTGCTAATAATAAGTTTACTGGCAACATTCCTTTTAGTTTAGGGTACATGGGT</genome_strand>
        <mrna_strand>ATGGGCAACCCAACAGACCCA-TGGGG-CAGGTATAGAGGGGAATCATGCAAATCTTCAAGGCACTCTACTAAAAGAACTATCTTATTTAACAGATGTGTCTCTCATTCATCTCAATACCAACAGATTTTCAGGTATAATTCCACAAACATTCAGAGATCTGTCTTCACTCTTTGAATTAGACCTTAGTAACAACCATTTCTCAAGTCCATTCCCTACTACAGTACTATTCATCCCAAATCTTCTTTATTTAGATCTCAGATTCAACAGTTTCACAGGCCCAATTCCCGAGGATCTGTTCAACAGAAAACTTGATGCTATTTTTCTTAATAATAACCAGTTTGATGGTGAACTACCTCAGAGTTTAAGGAATTCCCCTGCTTCAGTCATTAATTTTGCTAATAATAAGTTTACTGGCAACATTCCTTTTAGTTTAGGGTACATGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0074C08-dkn8r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E398793" ref_strand="+" ref_description="SGN-E398793 [TUS-41-M18](-)">
      <seq>ttatttagatttcagattcaacaggttcacaggcccaattcccgaggatctgttcaacagaaaacttgatgctatttttcttaataataaccagtttgatggtgaactacctcagagtttagggaattcccctgcttcagtcattaattttgctaataataagtttactggcaacattccttttagtttagggtacatgggtccgagaattaaggagattttgttcttaaacaatgagttaaatggttgtataccagaaggtgtgggattatggacggatttgcaagtattagatgtaagtttcaattcactgatggggcatttgcctgataccctttcttgtttgagtggcattgaggttctcaacttgggacataacaagttatctggagatttaccagacttggtttgttcactaagaaaccttgtgaatttgactcttgcttacaatttcttctctgagttgagccaagattgtgacaaacttccattgagaaatgtgggtattgatttctcattgaactgtattccaggaagacaaatgcaaaggcctcaacctgagtgctctgtcattccaggtggaagtcttagttgccttagagtacctgcagtaaagcctcttgtttgtggatgaaaaaattactattaccggacttagtagggctccaacgtgaactaaaaaataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0074C08-dkn8r/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0074C08.1" temp_strand="+" temp_description="C09HBa0074C08.1  AC234212.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0074C08 upload_account_name:spain (1 - 112940)">
        <position start="108072" stop="109366"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108372" g_stop="109065" g_length="694"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="694" r_length="694" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0074C08.1" gen_strand="+" ref_id="SGN-E398793" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0074C08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E398793" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108372" e_stop="109065"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTTAGATCTCAGATTCAACAGTTTCACAGGCCCAATTCCCGAGGATCTGTTCAACAGAAAACTTGATGCTATTTTTCTTAATAATAACCAGTTTGATGGTGAACTACCTCAGAGTTTAGGGAATTCCCCTGCTTCAGTCATTAATTTTGCTAATAATAAGTTTACTGGCAACATTCCTTTTAGTTTAGGGTACATGGGTCCGAGAATTAAGGAGATTTTGTTCTTAAACAATGAGTTAAATGGTTGTATACCAGAAGGTGTGGGATTATGGACGGATTTGCAAGTATTAGATGTAAGTTTCAATTCACTGATGGGGCATTTGCCTGATACCCTTTCTTGTTTGAGTGGCATTGAGGTTCTCAACTTGGGACATAACAAGTTATCTGGAGATTTACCAGACTTGGTTTGTTCACTAAGAAACCTTGTGAATTTGACTCTTGCTTACAATTTCTTCTCTGAGTTGAGCCAAGATTGTGACAAACTTCCATTGAGAAATGTGGGTATTGATTTCTCATTGAACTGTATTCCAGGAAGACAAATGCAAAGGCCTCAACCTGAGTGCTCTGTCATTCCAGGTGGAAGTCTTAGTTGCCTTAGAGTACCTGCAGTAAAGCCTCTTGTTTGTGGATGAAAAAATTACTATTACCGGACTTAGCAGGGCTCCAACGTGAACTAAAAAATAAAAAAGAAA</genome_strand>
        <mrna_strand>TTATTTAGATTTCAGATTCAACAGGTTCACAGGCCCAATTCCCGAGGATCTGTTCAACAGAAAACTTGATGCTATTTTTCTTAATAATAACCAGTTTGATGGTGAACTACCTCAGAGTTTAGGGAATTCCCCTGCTTCAGTCATTAATTTTGCTAATAATAAGTTTACTGGCAACATTCCTTTTAGTTTAGGGTACATGGGTCCGAGAATTAAGGAGATTTTGTTCTTAAACAATGAGTTAAATGGTTGTATACCAGAAGGTGTGGGATTATGGACGGATTTGCAAGTATTAGATGTAAGTTTCAATTCACTGATGGGGCATTTGCCTGATACCCTTTCTTGTTTGAGTGGCATTGAGGTTCTCAACTTGGGACATAACAAGTTATCTGGAGATTTACCAGACTTGGTTTGTTCACTAAGAAACCTTGTGAATTTGACTCTTGCTTACAATTTCTTCTCTGAGTTGAGCCAAGATTGTGACAAACTTCCATTGAGAAATGTGGGTATTGATTTCTCATTGAACTGTATTCCAGGAAGACAAATGCAAAGGCCTCAACCTGAGTGCTCTGTCATTCCAGGTGGAAGTCTTAGTTGCCTTAGAGTACCTGCAGTAAAGCCTCTTGTTTGTGGATGAAAAAATTACTATTACCGGACTTAGTAGGGCTCCAACGTGAACTAAAAAATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0074C08-dkn8r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E389609" ref_strand="+" ref_description="SGN-E389609 [TUS-4-J3](-)">
      <seq>ttcaacagaaaacttgatgctatttttcttaataataaccagtttgatggtgaactacctcagagtttagggaattcccctgtttcagtcattaattttgctaataataagtttactggcaacattccttttagtttagggtacatgggtccgagaattaaggagattttgttcttaaacaatgagttaaatggttgtataccagaaggtgtgggattatggacggatttgcaagtattagatgtaagtttcaattcactgatggggcatttgcctgataccctttcttgtttgagtggcattgaggttctcaacttgggacataacaagttatctggagatttaccagacttggtttgttcactaagaaaccttgtgaatttgactcttgcttacaatttcttctctgagttgagccaagattgtgacaaacttccattgagaaatgtgggtattgatttctcattgaactgtattccaggaagacaaatgcaaaggcctcaacctgagtgctctgtcattccaggtggaagtcttagttgccttagagtacctgcagtaaagcctcttgtttgtggatgaaaaaattactattaccggacttagtagggctccaacgtgaactaaaaaataaaaaagaaaaatgaaaaaactactactactactattttatttatttatgagtgacaacaattgagcacgatgatcaatgtttttgttgtaaacctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0074C08-dkn8r/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0074C08.1" temp_strand="+" temp_description="C09HBa0074C08.1  AC234212.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0074C08 upload_account_name:spain (1 - 112940)">
        <position start="108124" stop="109453"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108424" g_stop="109153" g_length="730"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="730" r_length="730" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0074C08.1" gen_strand="+" ref_id="SGN-E389609" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0074C08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E389609" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108424" e_stop="109153"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAACAGAAAACTTGATGCTATTTTTCTTAATAATAACCAGTTTGATGGTGAACTACCTCAGAGTTTAGGGAATTCCCCTGCTTCAGTCATTAATTTTGCTAATAATAAGTTTACTGGCAACATTCCTTTTAGTTTAGGGTACATGGGTCCGAGAATTAAGGAGATTTTGTTCTTAAACAATGAGTTAAATGGTTGTATACCAGAAGGTGTGGGATTATGGACGGATTTGCAAGTATTAGATGTAAGTTTCAATTCACTGATGGGGCATTTGCCTGATACCCTTTCTTGTTTGAGTGGCATTGAGGTTCTCAACTTGGGACATAACAAGTTATCTGGAGATTTACCAGACTTGGTTTGTTCACTAAGAAACCTTGTGAATTTGACTCTTGCTTACAATTTCTTCTCTGAGTTGAGCCAAGATTGTGACAAACTTCCATTGAGAAATGTGGGTATTGATTTCTCATTGAACTGTATTCCAGGAAGACAAATGCAAAGGCCTCAACCTGAGTGCTCTGTCATTCCAGGTGGAAGTCTTAGTTGCCTTAGAGTACCTGCAGTAAAGCCTCTTGTTTGTGGATGAAAAAATTACTATTACCGGACTTAGCAGGGCTCCAACGTGAACTAAAAAATAAAAAAGAAAAATGAAAAAACTACTACTACTACTATTTTATTTATTTATGAGTGACAACAATTGAGCACTCTCATCAATGTTTTTGTTGTAAACCTGG</genome_strand>
        <mrna_strand>TTCAACAGAAAACTTGATGCTATTTTTCTTAATAATAACCAGTTTGATGGTGAACTACCTCAGAGTTTAGGGAATTCCCCTGTTTCAGTCATTAATTTTGCTAATAATAAGTTTACTGGCAACATTCCTTTTAGTTTAGGGTACATGGGTCCGAGAATTAAGGAGATTTTGTTCTTAAACAATGAGTTAAATGGTTGTATACCAGAAGGTGTGGGATTATGGACGGATTTGCAAGTATTAGATGTAAGTTTCAATTCACTGATGGGGCATTTGCCTGATACCCTTTCTTGTTTGAGTGGCATTGAGGTTCTCAACTTGGGACATAACAAGTTATCTGGAGATTTACCAGACTTGGTTTGTTCACTAAGAAACCTTGTGAATTTGACTCTTGCTTACAATTTCTTCTCTGAGTTGAGCCAAGATTGTGACAAACTTCCATTGAGAAATGTGGGTATTGATTTCTCATTGAACTGTATTCCAGGAAGACAAATGCAAAGGCCTCAACCTGAGTGCTCTGTCATTCCAGGTGGAAGTCTTAGTTGCCTTAGAGTACCTGCAGTAAAGCCTCTTGTTTGTGGATGAAAAAATTACTATTACCGGACTTAGTAGGGCTCCAACGTGAACTAAAAAATAAAAAAGAAAAATGAAAAAACTACTACTACTACTATTTTATTTATTTATGAGTGACAACAATTGAGCACGATGATCAATGTTTTTGTTGTAAACCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0074C08-dkn8r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352368" ref_strand="+" ref_description="SGN-E352368 [cTOS-9-O22]">
      <seq>ttgtataccagaaggtgtgggattatggacggatttgcaagtattagatgtaagtttcaattcactgatggggcatttgcctgataccctttcttgtttgagtggcattgaggttctcaacttgggacataacaagttatctggagatttaccagacttggtttgttcactaagaaaccttgtgaatttgactcttgcttacaatttcttctctgagttgagccaagattgtgacaaacttccattgagaaatgtgggtattgatttctcattgaactgtattccaggaagacaaatgcaaaggcctcaacctgagtgctctgtcattccaggtggaagtcttagttgccttagagtacctgcagtaaagcctcttgtttgtggatgaaaaaattactattaccggacttagtagggctccaacgtgaactaaaaaataaaaaagaaaaatgaaaaaactactactactactattttatttatttatgagtgacaacaattgagcactctcatcaatgtttttgttgtaaacctggccaagttatgacttgtacctttcaaatttatttctcttccttatttatttatgttgcattatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0074C08-dkn8r/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0074C08.1" temp_strand="+" temp_description="C09HBa0074C08.1  AC234212.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0074C08 upload_account_name:spain (1 - 112940)">
        <position start="108318" stop="109516"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108618" g_stop="109216" g_length="599"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="599" r_length="599" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0074C08.1" gen_strand="+" ref_id="SGN-E352368" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0074C08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352368" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108618" e_stop="109216"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTATACCAGAAGGTGTGGGATTATGGACGGATTTGCAAGTATTAGATGTAAGTTTCAATTCACTGATGGGGCATTTGCCTGATACCCTTTCTTGTTTGAGTGGCATTGAGGTTCTCAACTTGGGACATAACAAGTTATCTGGAGATTTACCAGACTTGGTTTGTTCACTAAGAAACCTTGTGAATTTGACTCTTGCTTACAATTTCTTCTCTGAGTTGAGCCAAGATTGTGACAAACTTCCATTGAGAAATGTGGGTATTGATTTCTCATTGAACTGTATTCCAGGAAGACAAATGCAAAGGCCTCAACCTGAGTGCTCTGTCATTCCAGGTGGAAGTCTTAGTTGCCTTAGAGTACCTGCAGTAAAGCCTCTTGTTTGTGGATGAAAAAATTACTATTACCGGACTTAGCAGGGCTCCAACGTGAACTAAAAAATAAAAAAGAAAAATGAAAAAACTACTACTACTACTATTTTATTTATTTATGAGTGACAACAATTGAGCACTCTCATCAATGTTTTTGTTGTAAACCTGGCCAAGTTATGACTTGTACCTTTCAAATTTATTTCTCTTCCTTATTTATTTATGTTGCATTATG</genome_strand>
        <mrna_strand>TTGTATACCAGAAGGTGTGGGATTATGGACGGATTTGCAAGTATTAGATGTAAGTTTCAATTCACTGATGGGGCATTTGCCTGATACCCTTTCTTGTTTGAGTGGCATTGAGGTTCTCAACTTGGGACATAACAAGTTATCTGGAGATTTACCAGACTTGGTTTGTTCACTAAGAAACCTTGTGAATTTGACTCTTGCTTACAATTTCTTCTCTGAGTTGAGCCAAGATTGTGACAAACTTCCATTGAGAAATGTGGGTATTGATTTCTCATTGAACTGTATTCCAGGAAGACAAATGCAAAGGCCTCAACCTGAGTGCTCTGTCATTCCAGGTGGAAGTCTTAGTTGCCTTAGAGTACCTGCAGTAAAGCCTCTTGTTTGTGGATGAAAAAATTACTATTACCGGACTTAGTAGGGCTCCAACGTGAACTAAAAAATAAAAAAGAAAAATGAAAAAACTACTACTACTACTATTTTATTTATTTATGAGTGACAACAATTGAGCACTCTCATCAATGTTTTTGTTGTAAACCTGGCCAAGTTATGACTTGTACCTTTCAAATTTATTTCTCTTCCTTATTTATTTATGTTGCATTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0074C08-dkn8r/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E357417" ref_strand="+" ref_description="SGN-E357417 [cTOS-23-J14]">
      <seq>ttgtataccagaaggtgtgggattatggacggatttgcaagtattagatgtaagtttcaattcactgatggggcatttgcctgataccctttcttgtttgagtggcattgaggttctcaacttgggacataacaagttatctggagatttaccagacttggtttgttcactaagaaaccttgtgaatttgactcttgcttacaatttcttctctgagttgagccaagattgtgacaaacttccattgagaaatgtgggtattgatttctcattgaactgtattccaggaagacaaatgcaaaggcctcaacctgagtgctctgtcattccaggtggaagtcttagttgccttagagtacctgcagtaaagcctcttgtttgtggatgaaaaaattactattaccggacttagtagggctccaacgtgaactaaaaaataaaaaagaaaaatgaaaaaactactactactactattttatttatttatgagtgacaacaattgagcactctcatcaatgtttttgttgtaaacctggccaagttatgacttgtacctttcaaatttatttctcttccttatttatttatgttgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0074C08-dkn8r/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0074C08.1" temp_strand="+" temp_description="C09HBa0074C08.1  AC234212.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0074C08 upload_account_name:spain (1 - 112940)">
        <position start="108318" stop="109512"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108618" g_stop="109212" g_length="595"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="595" r_length="595" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0074C08.1" gen_strand="+" ref_id="SGN-E357417" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0074C08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357417" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108618" e_stop="109212"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTATACCAGAAGGTGTGGGATTATGGACGGATTTGCAAGTATTAGATGTAAGTTTCAATTCACTGATGGGGCATTTGCCTGATACCCTTTCTTGTTTGAGTGGCATTGAGGTTCTCAACTTGGGACATAACAAGTTATCTGGAGATTTACCAGACTTGGTTTGTTCACTAAGAAACCTTGTGAATTTGACTCTTGCTTACAATTTCTTCTCTGAGTTGAGCCAAGATTGTGACAAACTTCCATTGAGAAATGTGGGTATTGATTTCTCATTGAACTGTATTCCAGGAAGACAAATGCAAAGGCCTCAACCTGAGTGCTCTGTCATTCCAGGTGGAAGTCTTAGTTGCCTTAGAGTACCTGCAGTAAAGCCTCTTGTTTGTGGATGAAAAAATTACTATTACCGGACTTAGCAGGGCTCCAACGTGAACTAAAAAATAAAAAAGAAAAATGAAAAAACTACTACTACTACTATTTTATTTATTTATGAGTGACAACAATTGAGCACTCTCATCAATGTTTTTGTTGTAAACCTGGCCAAGTTATGACTTGTACCTTTCAAATTTATTTCTCTTCCTTATTTATTTATGTTGCAT</genome_strand>
        <mrna_strand>TTGTATACCAGAAGGTGTGGGATTATGGACGGATTTGCAAGTATTAGATGTAAGTTTCAATTCACTGATGGGGCATTTGCCTGATACCCTTTCTTGTTTGAGTGGCATTGAGGTTCTCAACTTGGGACATAACAAGTTATCTGGAGATTTACCAGACTTGGTTTGTTCACTAAGAAACCTTGTGAATTTGACTCTTGCTTACAATTTCTTCTCTGAGTTGAGCCAAGATTGTGACAAACTTCCATTGAGAAATGTGGGTATTGATTTCTCATTGAACTGTATTCCAGGAAGACAAATGCAAAGGCCTCAACCTGAGTGCTCTGTCATTCCAGGTGGAAGTCTTAGTTGCCTTAGAGTACCTGCAGTAAAGCCTCTTGTTTGTGGATGAAAAAATTACTATTACCGGACTTAGTAGGGCTCCAACGTGAACTAAAAAATAAAAAAGAAAAATGAAAAAACTACTACTACTACTATTTTATTTATTTATGAGTGACAACAATTGAGCACTCTCATCAATGTTTTTGTTGTAAACCTGGCCAAGTTATGACTTGTACCTTTCAAATTTATTTCTCTTCCTTATTTATTTATGTTGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>40</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="35435" PGL_stop="36161"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35435" e_stop="36161"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.947"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.947">
            <gDNA_exon_boundary e_start="35435" e_stop="36161" e_length="727"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35435" stop="35920"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367110" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35861" stop="36161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245978" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCACCCACAATACACCCGCAACCACCACTGACACTCACAACCAACCCGAACCACCCCATACCCACAACATCTCCAGCCCGATCCATTTTGGGTCCTTCCGGGCCACCCCCAAATCACCACCACCCGTGCCACCCCCCACTACTCATCCCATGTTAACCCGTGTCAAAGCTGGTATCTTTAAACCCAAAACCTTTCAGGCTACCATACTACCAAATACACCCTTTCCCGATAGTGAACCAACAACCTACTCTGTTGCCTTAAAAAATGCTTATTGGTGTCAAGATATGGATGACGAGTTTAAGTCTTTGACTGATCAGAAAACTTGGGTTCTTGTACCTAAGCCCCATGGGCGGCACCCAGTGGGCTGTAAATGGATGTACAAAATTAAACACAATGCAGATGGCAGTATTTCCAGGTACAAGGCTCGTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGGCTTGATTACTCCGAGACATTCACTCCTGTTATTCGGTAGGAAACCATTCACGTGGTACTGTCACTCGCTGTGTGCAACAATTGGATCATCAATCAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGCTTGATGAAACTATCTACATGACGCAACCACCAGGCTATGTTGATCCCCGCTTCCCTCAACATGTTTGCAAACTCCAGAAGTCTCTGTATGGTCTCAAGCAAGCCCCCCGTGCTTGGTACACACGTCTGAAAACGTT</gDNA_template>
            <first_frame> S  P  T  I  H  P  Q  P  P  L  T  L  T  T  N  P  N  H  P  I  P  T  T  S  P  A  R  S  I  L  G  P  S  G  P  P  P  N  H  H  H  P  C  H  P  P  L  L  I  P  C  *  P  V  S  K  L  V  S  L  N  P  K  P  F  R  L  P  Y  Y  Q  I  H  P  F  P  I  V  N  Q  Q  P  T  L  L  P  *  K  M  L  I  G  V  K  I  W  M  T  S  L  S  L  *  L  I  R  K  L  G  F  L  Y  L  S  P  M  G  G  T  Q  W  A  V  N  G  C  T  K  L  N  T  M  Q  M  A  V  F  P  G  T  R  L  V  W  L  L  K  A  T  I  R  S  M  G  L  I  T  P  R  H  S  L  L  L  F  G  R  K  P  F  T  W  Y  C  H  S  L  C  A  T  I  G  S  S  I  S  W  M  F  P  M  L  F  F  M  A  C  L  M  K  L  S  T  *  R  N  H  Q  A  M  L  I  P  A  S  L  N  M  F  A  N  S  R  S  L  C  M  V  S  S  K  P  P  V  L  G  T  H  V  *  K  R  </first_frame>
            <second_frame>  H  P  Q  Y  T  R  N  H  H  *  H  S  Q  P  T  R  T  T  P  Y  P  Q  H  L  Q  P  D  P  F  W  V  L  P  G  H  P  Q  I  T  T  T  R  A  T  P  H  Y  S  S  H  V  N  P  C  Q  S  W  Y  L  *  T  Q  N  L  S  G  Y  H  T  T  K  Y  T  L  S  R  *  *  T  N  N  L  L  C  C  L  K  K  C  L  L  V  S  R  Y  G  *  R  V  *  V  F  D  *  S  E  N  L  G  S  C  T  *  A  P  W  A  A  P  S  G  L  *  M  D  V  Q  N  *  T  Q  C  R  W  Q  Y  F  Q  V  Q  G  S  F  G  C  *  R  L  Q  S  G  V  W  A  *  L  L  R  D  I  H  S  C  Y  S  V  G  N  H  S  R  G  T  V  T  R  C  V  Q  Q  L  D  H  Q  S  V  G  C  F  Q  C  F  S  S  W  H  A  *  *  N  Y  L  H  D  A  T  T  R  L  C  *  S  P  L  P  S  T  C  L  Q  T  P  E  V  S  V  W  S  Q  A  S  P  P  C  L  V  H  T  S  E  N  V </second_frame>
            <third_frame>   T  H  N  T  P  A  T  T  T  D  T  H  N  Q  P  E  P  P  H  T  H  N  I  S  S  P  I  H  F  G  S  F  R  A  T  P  K  S  P  P  P  V  P  P  P  T  T  H  P  M  L  T  R  V  K  A  G  I  F  K  P  K  T  F  Q  A  T  I  L  P  N  T  P  F  P  D  S  E  P  T  T  Y  S  V  A  L  K  N  A  Y  W  C  Q  D  M  D  D  E  F  K  S  L  T  D  Q  K  T  W  V  L  V  P  K  P  H  G  R  H  P  V  G  C  K  W  M  Y  K  I  K  H  N  A  D  G  S  I  S  R  Y  K  A  R  L  V  A  K  G  Y  N  Q  E  Y  G  L  D  Y  S  E  T  F  T  P  V  I  R  *  E  T  I  H  V  V  L  S  L  A  V  C  N  N  W  I  I  N  Q  L  D  V  S  N  A  F  L  H  G  M  L  D  E  T  I  Y  M  T  Q  P  P  G  Y  V  D  P  R  F  P  Q  H  V  C  K  L  Q  K  S  L  Y  G  L  K  Q  A  P  R  A  W  Y  T  R  L  K  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0074C08.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35437" stop="35934"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>495</number_coding_nucleotides>
                  <number_encoded_amino_acids>165</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>THNTPATTTDTHNQPEPPHTHNISSPIHFGSFRATPKSPPPVPPPTTHPMLTRVKAGIFKPKTFQATILPNTPFPDSEPTTYSVALKNAYWCQDMDDEFKSLTDQKTWVLVPKPHGRHPVGCKWMYKIKHNADGSISRYKARLVAKGYNQEYGLDYSETFTPVIR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0074C08.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35935" stop="36159"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ETIHVVLSLAVCNNWIINQLDVSNAFLHGMLDETIYMTQPPGYVDPRFPQHVCKLQKSLYGLKQAPRAWYTRLKT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="53170" PGL_stop="52638"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53170" e_stop="52638"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.912"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.912">
            <gDNA_exon_boundary e_start="53170" e_stop="52638" e_length="533"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53170" stop="52638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286708" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53029" stop="52649"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577891" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCGCGATGGACCGTCATGGTCAGAACGGACCGTCATGGACTCCATCGTCCCATACTTGTGCAATTTCTTCTACTGCTTTCTTCATTTCCCTCGACGACAAGTATGACGGACCGTTATAGGCACAACGATCCGTCGAGGGTCTTCGTTCCAAAACACTTCAACTCTTGGAATCTGGCTACTGGGATCACTTCTCTGAACTTCAAGACGAACCTGCAGGACGGACCGTCATAGACACGATGGACCGTCACAAGCTTCGTAATCCCACACTTGGTCAGACTTCCCCATCTTCCTTCAGCAGCTGCACTACGCTGCCACCTACGGACCGTCCGAAGCACGACGGACCGTCATAAGCTGCGTAGGTGGTCTCTTCTGCATTTCTTCGCTCAAAATCTCCGCATTCACCTTTGGATAGATTTCCTGCAAAAAAAGAGAAACTTATATAAAAATTAGCACAAAAAGGCTTTTGGACACACTAAACTTAAGGAAAAAGTATTAATAATACCGTGAAACCACGGTATATCACCTATAAACAT</gDNA_template>
            <first_frame> S  R  W  T  V  M  V  R  T  D  R  H  G  L  H  R  P  I  L  V  Q  F  L  L  L  L  S  S  F  P  S  T  T  S  M  T  D  R  Y  R  H  N  D  P  S  R  V  F  V  P  K  H  F  N  S  W  N  L  A  T  G  I  T  S  L  N  F  K  T  N  L  Q  D  G  P  S  *  T  R  W  T  V  T  S  F  V  I  P  H  L  V  R  L  P  H  L  P  S  A  A  A  L  R  C  H  L  R  T  V  R  S  T  T  D  R  H  K  L  R  R  W  S  L  L  H  F  F  A  Q  N  L  R  I  H  L  W  I  D  F  L  Q  K  K  R  N  L  Y  K  N  *  H  K  K  A  F  G  H  T  K  L  K  E  K  V  L  I  I  P  *  N  H  G  I  S  P  I  N   </first_frame>
            <second_frame>  R  D  G  P  S  W  S  E  R  T  V  M  D  S  I  V  P  Y  L  C  N  F  F  Y  C  F  L  H  F  P  R  R  Q  V  *  R  T  V  I  G  T  T  I  R  R  G  S  S  F  Q  N  T  S  T  L  G  I  W  L  L  G  S  L  L  *  T  S  R  R  T  C  R  T  D  R  H  R  H  D  G  P  S  Q  A  S  *  S  H  T  W  S  D  F  P  I  F  L  Q  Q  L  H  Y  A  A  T  Y  G  P  S  E  A  R  R  T  V  I  S  C  V  G  G  L  F  C  I  S  S  L  K  I  S  A  F  T  F  G  *  I  S  C  K  K  R  E  T  Y  I  K  I  S  T  K  R  L  L  D  T  L  N  L  R  K  K  Y  *  *  Y  R  E  T  T  V  Y  H  L  *  T  </second_frame>
            <third_frame>   A  M  D  R  H  G  Q  N  G  P  S  W  T  P  S  S  H  T  C  A  I  S  S  T  A  F  F  I  S  L  D  D  K  Y  D  G  P  L  *  A  Q  R  S  V  E  G  L  R  S  K  T  L  Q  L  L  E  S  G  Y  W  D  H  F  S  E  L  Q  D  E  P  A  G  R  T  V  I  D  T  M  D  R  H  K  L  R  N  P  T  L  G  Q  T  S  P  S  S  F  S  S  C  T  T  L  P  P  T  D  R  P  K  H  D  G  P  S  *  A  A  *  V  V  S  S  A  F  L  R  S  K  S  P  H  S  P  L  D  R  F  P  A  K  K  E  K  L  I  *  K  L  A  Q  K  G  F  W  T  H  *  T  *  G  K  S  I  N  N  T  V  K  P  R  Y  I  T  Y  K  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0074C08.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53170" stop="52940"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SRWTVMVRTDRHGLHRPILVQFLLLLSSFPSTTSMTDRYRHNDPSRVFVPKHFNSWNLATGITSLNFKTNLQDGPS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0074C08.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53051" stop="52821"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AQRSVEGLRSKTLQLLESGYWDHFSELQDEPAGRTVIDTMDRHKLRNPTLGQTSPSSFSSCTTLPPTDRPKHDGPS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0074C08.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52939" stop="52721"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TRWTVTSFVIPHLVRLPHLPSAAALRCHLRTVRSTTDRHKLRRWSLLHFFAQNLRIHLWIDFLQKKRNLYKN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="99815" PGL_stop="98964"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="99815" e_stop="98964"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="99815" e_stop="98964" e_length="852"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99815" stop="99145"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274310" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99759" stop="99282"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329217" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99454" stop="98964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309238" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTACTCTTATATAGCTGCTGCAATCTGCGATAATAAAGTGCAAGAAATTCTGGTAAGAGTTGAGCCCTTCTATAACTGTATGTACTCAGACAAAGGTTTCCAGATTGGTTGATCAGAAACAATGGGATAGTAGTGAATTTGAGTTGCAAGAATGGTCAGGAAAAGATCTGGAGGTGTAGTTTGAATGATCTTTCGATATCCCAGCTTACATTGATAAAAAAAGCATACATTTGATGTTTTTTTGTGTTGAGTTTCCTCTTTTTTCATGCTTTGTTTTGTGCCACTTCTATCCTGATTTACATGTCTGCATTAGAGTATCTTAAGATTACTCTCCTGCTGCCCCTGTTCTTTGGCCTGAAGTGGACTTGGAGTTGGAATTGATGTTCTGATCCAGTGCTGCCTGAACTAAACATGTAATTTGAAGTCTTTTCAGGGTTAGATTATGTTATAACATCGTAACATGCCCCAATTTCTGATAAATGCCCTGACATGGATCCTAGTTTTTCCTACTGGGTTCTTGACATGTTCAGATGCAAGAGGTTGCTGGGAACATGGAGGTTACCTTCATGGAAGAGGCAGTATAGATTCTTTCTCATAATAATTGCTTCTTCTTTTTTTTACTTTGGTACATTAGTCTGTCCATATAATGGAAATGTGGAATAGTTTCTTGAACCTTGTTTAAGTTATATATTGTAGCCCTTGACAACGATGACTTGCTTTACCTCAATAAGCAGATGGGAGCCGAGGAGAATGCTGAACGTCTTCTGCTCTCAAAAACGTGCATTTCAAGCATTCAAGATATCCTTTTTGTTTGTTTCTTCTTTGATGCCACTGCATAATAATATTGAATG</gDNA_template>
            <first_frame> I  T  L  I  *  L  L  Q  S  A  I  I  K  C  K  K  F  W  *  E  L  S  P  S  I  T  V  C  T  Q  T  K  V  S  R  L  V  D  Q  K  Q  W  D  S  S  E  F  E  L  Q  E  W  S  G  K  D  L  E  V  *  F  E  *  S  F  D  I  P  A  Y  I  D  K  K  S  I  H  L  M  F  F  C  V  E  F  P  L  F  S  C  F  V  L  C  H  F  Y  P  D  L  H  V  C  I  R  V  S  *  D  Y  S  P  A  A  P  V  L  W  P  E  V  D  L  E  L  E  L  M  F  *  S  S  A  A  *  T  K  H  V  I  *  S  L  F  R  V  R  L  C  Y  N  I  V  T  C  P  N  F  *  *  M  P  *  H  G  S  *  F  F  L  L  G  S  *  H  V  Q  M  Q  E  V  A  G  N  M  E  V  T  F  M  E  E  A  V  *  I  L  S  H  N  N  C  F  F  F  F  L  L  W  Y  I  S  L  S  I  *  W  K  C  G  I  V  S  *  T  L  F  K  L  Y  I  V  A  L  D  N  D  D  L  L  Y  L  N  K  Q  M  G  A  E  E  N  A  E  R  L  L  L  S  K  T  C  I  S  S  I  Q  D  I  L  F  V  C  F  F  F  D  A  T  A  *  *  Y  *  M </first_frame>
            <second_frame>  L  L  L  Y  S  C  C  N  L  R  *  *  S  A  R  N  S  G  K  S  *  A  L  L  *  L  Y  V  L  R  Q  R  F  P  D  W  L  I  R  N  N  G  I  V  V  N  L  S  C  K  N  G  Q  E  K  I  W  R  C  S  L  N  D  L  S  I  S  Q  L  T  L  I  K  K  A  Y  I  *  C  F  F  V  L  S  F  L  F  F  H  A  L  F  C  A  T  S  I  L  I  Y  M  S  A  L  E  Y  L  K  I  T  L  L  L  P  L  F  F  G  L  K  W  T  W  S  W  N  *  C  S  D  P  V  L  P  E  L  N  M  *  F  E  V  F  S  G  L  D  Y  V  I  T  S  *  H  A  P  I  S  D  K  C  P  D  M  D  P  S  F  S  Y  W  V  L  D  M  F  R  C  K  R  L  L  G  T  W  R  L  P  S  W  K  R  Q  Y  R  F  F  L  I  I  I  A  S  S  F  F  Y  F  G  T  L  V  C  P  Y  N  G  N  V  E  *  F  L  E  P  C  L  S  Y  I  L  *  P  L  T  T  M  T  C  F  T  S  I  S  R  W  E  P  R  R  M  L  N  V  F  C  S  Q  K  R  A  F  Q  A  F  K  I  S  F  L  F  V  S  S  L  M  P  L  H  N  N  I  E   </second_frame>
            <third_frame>   Y  S  Y  I  A  A  A  I  C  D  N  K  V  Q  E  I  L  V  R  V  E  P  F  Y  N  C  M  Y  S  D  K  G  F  Q  I  G  *  S  E  T  M  G  *  *  *  I  *  V  A  R  M  V  R  K  R  S  G  G  V  V  *  M  I  F  R  Y  P  S  L  H  *  *  K  K  H  T  F  D  V  F  L  C  *  V  S  S  F  F  M  L  C  F  V  P  L  L  S  *  F  T  C  L  H  *  S  I  L  R  L  L  S  C  C  P  C  S  L  A  *  S  G  L  G  V  G  I  D  V  L  I  Q  C  C  L  N  *  T  C  N  L  K  S  F  Q  G  *  I  M  L  *  H  R  N  M  P  Q  F  L  I  N  A  L  T  W  I  L  V  F  P  T  G  F  L  T  C  S  D  A  R  G  C  W  E  H  G  G  Y  L  H  G  R  G  S  I  D  S  F  S  *  *  L  L  L  L  F  F  T  L  V  H  *  S  V  H  I  M  E  M  W  N  S  F  L  N  L  V  *  V  I  Y  C  S  P  *  Q  R  *  L  A  L  P  Q  *  A  D  G  S  R  G  E  C  *  T  S  S  A  L  K  N  V  H  F  K  H  S  R  Y  P  F  C  L  F  L  L  *  C  H  C  I  I  I  L  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0074C08.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99355" stop="99152"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HAPISDKCPDMDPSFSYWVLDMFRCKRLLGTWRLPSWKRQYRFFLIIIASSFFYFGTLVCPYNGNVE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="103068" PGL_stop="101552"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="103068" e_stop="102695"/>
            <exon e_start="102097" e_stop="101940"/>
            <exon e_start="101827" e_stop="101552"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.884" acc_prob="0.983" e_score="0.995"/>
          <exon-intron don_prob="0.986" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.902"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="103068" e_stop="102695" e_length="374"/>
          </exon>
          <intron i_serial="1" don_prob="0.884" acc_prob="0.983">
            <gDNA_intron_boundary i_start="102694" i_stop="102098" i_length="597"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="102097" e_stop="101940" e_length="158"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.998">
            <gDNA_intron_boundary i_start="101939" i_stop="101828" i_length="112"/>
          </intron>
          <exon e_serial="3" e_score="0.902">
            <gDNA_exon_boundary e_start="101827" e_stop="101552" e_length="276"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103068" stop="102695"/>
              <exon start="102097" stop="101940"/>
              <exon start="101827" stop="101707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101987" stop="101940"/>
              <exon start="101827" stop="101552"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E596676" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGGTATCTCTTCATTTTTCACTATAATTTTGCTACGATTTCTTCAGCAAATTCAAGGAATGAATCGCTCCTAAGATGACTAAGATTTTGCTCCTACGATCTGACTTCCATTTTGTTCCTAATCAGCTGACTTTGTTCTTTACGATCTGCCAACGATTTTGCTCCTAATATGAAAATTCGCTCATCGTGAATCTCTCGTCTAGCTTATCTAATCAGCGTGAAGAACAAAATTCCTCCAAATCTATTTTCTTTTGCGCTGTTCTAGTCAAGATGATGAATAGTATAGAACTGAGTGCTTCACTTCAGAAGATGGTGTGTTATAGCTTCATCACAATGAAAGGATTTTGTTGAATTTGTTGGAATAGGGTTTTACAG : GTCAAAGCTGATAGGGATGAATCTTCCCCATAAGCTACTATGCTTGCTTCACATCAAGCTTCAAGCCACTAGTGGAAACAAGACGAAAACACCTGGACCTGGTGCTCTGTCTGCTCTAAGAGCTCTTGCTCGTTCTGGAATGAAAATTGGTCGTATAG : AGGACGTGACTCCAATTCCAAATGATAGCACTCACATAAAGGGTGGTAGGAGAGGAAGAATGATGTAAGCTTGCTTCAATTGTCAATAAGGAGATGCAGTTTCTTGTTGAGAATGCTGCAGGTGTTAGTTTTGATATGAACTTGAATCTTATTCATCTACTATGTAGTTGTACTTATGTTTGCCTTGCTTATAATTTTTGCTACTTTTCGTGGTTAAATTTGTGAAACAATTATGAGAAATATGAATTTTAGCCTACTATCTATTAGCTGGTTGAG</gDNA_template>
            <first_frame> R  Y  L  F  I  F  H  Y  N  F  A  T  I  S  S  A  N  S  R  N  E  S  L  L  R  *  L  R  F  C  S  Y  D  L  T  S  I  L  F  L  I  S  *  L  C  S  L  R  S  A  N  D  F  A  P  N  M  K  I  R  S  S  *  I  S  R  L  A  Y  L  I  S  V  K  N  K  I  P  P  N  L  F  S  F  A  L  F  *  S  R  *  *  I  V  *  N  *  V  L  H  F  R  R  W  C  V  I  A  S  S  Q  *  K  D  F  V  E  F  V  G  I  G  F  Y  R :   S  K  L  I  G  M  N  L  P  H  K  L  L  C  L  L  H  I  K  L  Q  A  T  S  G  N  K  T  K  T  P  G  P  G  A  L  S  A  L  R  A  L  A  R  S  G  M  K  I  G  R  I   : E  D  V  T  P  I  P  N  D  S  T  H  I  K  G  G  R  R  G  R  M  M  *  A  C  F  N  C  Q  *  G  D  A  V  S  C  *  E  C  C  R  C  *  F  *  Y  E  L  E  S  Y  S  S  T  M  *  L  Y  L  C  L  P  C  L  *  F  L  L  L  F  V  V  K  F  V  K  Q  L  *  E  I  *  I  L  A  Y  Y  L  L  A  G  *  </first_frame>
            <second_frame>  G  I  S  S  F  F  T  I  I  L  L  R  F  L  Q  Q  I  Q  G  M  N  R  S  *  D  D  *  D  F  A  P  T  I  *  L  P  F  C  S  *  S  A  D  F  V  L  Y  D  L  P  T  I  L  L  L  I  *  K  F  A  H  R  E  S  L  V  *  L  I  *  S  A  *  R  T  K  F  L  Q  I  Y  F  L  L  R  C  S  S  Q  D  D  E  *  Y  R  T  E  C  F  T  S  E  D  G  V  L  *  L  H  H  N  E  R  I  L  L  N  L  L  E  *  G  F  T   : G  Q  S  *  *  G  *  I  F  P  I  S  Y  Y  A  C  F  T  S  S  F  K  P  L  V  E  T  R  R  K  H  L  D  L  V  L  C  L  L  *  E  L  L  L  V  L  E  *  K  L  V  V  *  :  R  T  *  L  Q  F  Q  M  I  A  L  T  *  R  V  V  G  E  E  E  *  C  K  L  A  S  I  V  N  K  E  M  Q  F  L  V  E  N  A  A  G  V  S  F  D  M  N  L  N  L  I  H  L  L  C  S  C  T  Y  V  C  L  A  Y  N  F  C  Y  F  S  W  L  N  L  *  N  N  Y  E  K  Y  E  F  *  P  T  I  Y  *  L  V  E </second_frame>
            <third_frame>   V  S  L  H  F  S  L  *  F  C  Y  D  F  F  S  K  F  K  E  *  I  A  P  K  M  T  K  I  L  L  L  R  S  D  F  H  F  V  P  N  Q  L  T  L  F  F  T  I  C  Q  R  F  C  S  *  Y  E  N  S  L  I  V  N  L  S  S  S  L  S  N  Q  R  E  E  Q  N  S  S  K  S  I  F  F  C  A  V  L  V  K  M  M  N  S  I  E  L  S  A  S  L  Q  K  M  V  C  Y  S  F  I  T  M  K  G  F  C  *  I  C  W  N  R  V  L  Q  :  V  K  A  D  R  D  E  S  S  P  *  A  T  M  L  A  S  H  Q  A  S  S  H  *  W  K  Q  D  E  N  T  W  T  W  C  S  V  C  S  K  S  S  C  S  F  W  N  E  N  W  S  Y  R :   G  R  D  S  N  S  K  *  *  H  S  H  K  G  W  *  E  R  K  N  D  V  S  L  L  Q  L  S  I  R  R  C  S  F  L  L  R  M  L  Q  V  L  V  L  I  *  T  *  I  L  F  I  Y  Y  V  V  V  L  M  F  A  L  L  I  I  F  A  T  F  R  G  *  I  C  E  T  I  M  R  N  M  N  F  S  L  L  S  I  S  W  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0074C08.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102732" stop="102695"/>
                    <exon start="102097" stop="101940"/>
                    <exon start="101827" stop="101760"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KDFVEFVGIGFYRSKLIGMNLPHKLLCLLHIKLQATSGNKTKTPGPGALSALRALARSGMKIGRIEDVTPIPNDSTHIKGGRRGRMM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="107667" PGL_stop="109216"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="107667" e_stop="109216"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="107667" e_stop="109216" e_length="1550"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107667" stop="108549"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701071" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107669" stop="108460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107680" stop="109069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745349" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107684" stop="108222"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208246" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107691" stop="107966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464968" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107696" stop="108076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440538" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107714" stop="108372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456641" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107728" stop="108296"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203264" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107739" stop="108524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326813" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107739" stop="108348"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326847" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107739" stop="108295"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328226" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107739" stop="108245"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312349" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107742" stop="108139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302158" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107745" stop="108554"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320238" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107753" stop="108454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E461460" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107799" stop="108454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730252" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107815" stop="108292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395197" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107824" stop="108171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305239" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107857" stop="108565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389866" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107858" stop="108255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241134" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107858" stop="108216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232879" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107898" stop="108456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255776" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108108" stop="108686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301354" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108127" stop="108573"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301262" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108372" stop="109065"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398793" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108424" stop="109153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389609" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108618" stop="109216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108618" stop="109212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357417" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGCAATGCTGAGTGTATTAAATATGTAGTGTAAGACGAGAGTAGCAATAAACCCCTCATTGAAGAAGCAGCACCAACTAAACCCACATCGTCTCTCATCAATGCTACAATCACATTTTGTGCAACCTTGCAAAAAAAAGAAAAGACTCTTGTTTGATCAAAAATGGGGGGAAGTTGCTTTCTGGTTTTGCTTCTTCAAATCATAGTTACTCAAGTTGTTGGTGTTGGTGTTGGTGTTGGCGTTGGCGTTGGTGTTGGTGTTGGACCTGGAGGTGTTTGGTTTGGTGGAGGGATCAACAGCCCAAACCCAGGAGCTGTCCCAAGTCAAAGTTCAGCATACACTGCTCTTCAAGCATGGAAATCTGCAATTACTGATGATCCATCGGGGATTTTGAAGAATTGGGTGGGTCCAAATGTGTGTAGTTACAAAGGAATTTTCTGCTCAAACTCTCAAGATTACATGGGCAACCCAACAGACCCAGTTGTTACAGGTATAGATCTCAATCATGCAAATCTTCAAGGCACTCTAGTAAAAGAACTATCTTATTTAACAGATGTGTCTCTCATTCATCTCAATACCAACAGATTTTCAGGTATAATTCCACAAACATTCAGAGATCTGTCTTCACTCGTTGAATTAGACCTTAGTAACAACCATTTCTCAGGTCCATTCCCTACTACAGTACTATTCATCCCAAATCTTCTTTATTTAGATCTCAGATTCAACAGTTTCACAGGCCCAATTCCCGAGGATCTGTTCAACAGAAAACTTGATGCTATTTTTCTTAATAATAACCAGTTTGATGGTGAACTACCTCAGAGTTTAGGGAATTCCCCTGCTTCAGTCATTAATTTTGCTAATAATAAGTTTACTGGCAACATTCCTTTTAGTTTAGGGTACATGGGTCCGAGAATTAAGGAGATTTTGTTCTTAAACAATGAGTTAAATGGTTGTATACCAGAAGGTGTGGGATTATGGACGGATTTGCAAGTATTAGATGTAAGTTTCAATTCACTGATGGGGCATTTGCCTGATACCCTTTCTTGTTTGAGTGGCATTGAGGTTCTCAACTTGGGACATAACAAGTTATCTGGAGATTTACCAGACTTGGTTTGTTCACTAAGAAACCTTGTGAATTTGACTCTTGCTTACAATTTCTTCTCTGAGTTGAGCCAAGATTGTGACAAACTTCCATTGAGAAATGTGGGTATTGATTTCTCATTGAACTGTATTCCAGGAAGACAAATGCAAAGGCCTCAACCTGAGTGCTCTGTCATTCCAGGTGGAAGTCTTAGTTGCCTTAGAGTACCTGCAGTAAAGCCTCTTGTTTGTGGATGAAAAAATTACTATTACCGGACTTAGCAGGGCTCCAACGTGAACTAAAAAATAAAAAAGAAAAATGAAAAAACTACTACTACTACTATTTTATTTATTTATGAGTGACAACAATTGAGCACTCTCATCAATGTTTTTGTTGTAAACCTGGCCAAGTTATGACTTGTACCTTTCAAATTTATTTCTCTTCCTTATTTATTTATGTTGCATTATG</gDNA_template>
            <first_frame> L  Q  C  *  V  Y  *  I  C  S  V  R  R  E  *  Q  *  T  P  H  *  R  S  S  T  N  *  T  H  I  V  S  H  Q  C  Y  N  H  I  L  C  N  L  A  K  K  R  K  D  S  C  L  I  K  N  G  G  K  L  L  S  G  F  A  S  S  N  H  S  Y  S  S  C  W  C  W  C  W  C  W  R  W  R  W  C  W  C  W  T  W  R  C  L  V  W  W  R  D  Q  Q  P  K  P  R  S  C  P  K  S  K  F  S  I  H  C  S  S  S  M  E  I  C  N  Y  *  *  S  I  G  D  F  E  E  L  G  G  S  K  C  V  *  L  Q  R  N  F  L  L  K  L  S  R  L  H  G  Q  P  N  R  P  S  C  Y  R  Y  R  S  Q  S  C  K  S  S  R  H  S  S  K  R  T  I  L  F  N  R  C  V  S  H  S  S  Q  Y  Q  Q  I  F  R  Y  N  S  T  N  I  Q  R  S  V  F  T  R  *  I  R  P  *  *  Q  P  F  L  R  S  I  P  Y  Y  S  T  I  H  P  K  S  S  L  F  R  S  Q  I  Q  Q  F  H  R  P  N  S  R  G  S  V  Q  Q  K  T  *  C  Y  F  S  *  *  *  P  V  *  W  *  T  T  S  E  F  R  E  F  P  C  F  S  H  *  F  C  *  *  *  V  Y  W  Q  H  S  F  *  F  R  V  H  G  S  E  N  *  G  D  F  V  L  K  Q  *  V  K  W  L  Y  T  R  R  C  G  I  M  D  G  F  A  S  I  R  C  K  F  Q  F  T  D  G  A  F  A  *  Y  P  F  L  F  E  W  H  *  G  S  Q  L  G  T  *  Q  V  I  W  R  F  T  R  L  G  L  F  T  K  K  P  C  E  F  D  S  C  L  Q  F  L  L  *  V  E  P  R  L  *  Q  T  S  I  E  K  C  G  Y  *  F  L  I  E  L  Y  S  R  K  T  N  A  K  A  S  T  *  V  L  C  H  S  R  W  K  S  *  L  P  *  S  T  C  S  K  A  S  C  L  W  M  K  K  L  L  L  P  D  L  A  G  L  Q  R  E  L  K  N  K  K  E  K  *  K  N  Y  Y  Y  Y  Y  F  I  Y  L  *  V  T  T  I  E  H  S  H  Q  C  F  C  C  K  P  G  Q  V  M  T  C  T  F  Q  I  Y  F  S  S  L  F  I  Y  V  A  L   </first_frame>
            <second_frame>  C  N  A  E  C  I  K  Y  V  V  *  D  E  S  S  N  K  P  L  I  E  E  A  A  P  T  K  P  T  S  S  L  I  N  A  T  I  T  F  C  A  T  L  Q  K  K  E  K  T  L  V  *  S  K  M  G  G  S  C  F  L  V  L  L  L  Q  I  I  V  T  Q  V  V  G  V  G  V  G  V  G  V  G  V  G  V  G  V  G  P  G  G  V  W  F  G  G  G  I  N  S  P  N  P  G  A  V  P  S  Q  S  S  A  Y  T  A  L  Q  A  W  K  S  A  I  T  D  D  P  S  G  I  L  K  N  W  V  G  P  N  V  C  S  Y  K  G  I  F  C  S  N  S  Q  D  Y  M  G  N  P  T  D  P  V  V  T  G  I  D  L  N  H  A  N  L  Q  G  T  L  V  K  E  L  S  Y  L  T  D  V  S  L  I  H  L  N  T  N  R  F  S  G  I  I  P  Q  T  F  R  D  L  S  S  L  V  E  L  D  L  S  N  N  H  F  S  G  P  F  P  T  T  V  L  F  I  P  N  L  L  Y  L  D  L  R  F  N  S  F  T  G  P  I  P  E  D  L  F  N  R  K  L  D  A  I  F  L  N  N  N  Q  F  D  G  E  L  P  Q  S  L  G  N  S  P  A  S  V  I  N  F  A  N  N  K  F  T  G  N  I  P  F  S  L  G  Y  M  G  P  R  I  K  E  I  L  F  L  N  N  E  L  N  G  C  I  P  E  G  V  G  L  W  T  D  L  Q  V  L  D  V  S  F  N  S  L  M  G  H  L  P  D  T  L  S  C  L  S  G  I  E  V  L  N  L  G  H  N  K  L  S  G  D  L  P  D  L  V  C  S  L  R  N  L  V  N  L  T  L  A  Y  N  F  F  S  E  L  S  Q  D  C  D  K  L  P  L  R  N  V  G  I  D  F  S  L  N  C  I  P  G  R  Q  M  Q  R  P  Q  P  E  C  S  V  I  P  G  G  S  L  S  C  L  R  V  P  A  V  K  P  L  V  C  G  *  K  N  Y  Y  Y  R  T  *  Q  G  S  N  V  N  *  K  I  K  K  K  N  E  K  T  T  T  T  T  I  L  F  I  Y  E  *  Q  Q  L  S  T  L  I  N  V  F  V  V  N  L  A  K  L  *  L  V  P  F  K  F  I  S  L  P  Y  L  F  M  L  H  Y  </second_frame>
            <third_frame>   A  M  L  S  V  L  N  M  *  C  K  T  R  V  A  I  N  P  S  L  K  K  Q  H  Q  L  N  P  H  R  L  S  S  M  L  Q  S  H  F  V  Q  P  C  K  K  K  K  R  L  L  F  D  Q  K  W  G  E  V  A  F  W  F  C  F  F  K  S  *  L  L  K  L  L  V  L  V  L  V  L  A  L  A  L  V  L  V  L  D  L  E  V  F  G  L  V  E  G  S  T  A  Q  T  Q  E  L  S  Q  V  K  V  Q  H  T  L  L  F  K  H  G  N  L  Q  L  L  M  I  H  R  G  F  *  R  I  G  W  V  Q  M  C  V  V  T  K  E  F  S  A  Q  T  L  K  I  T  W  A  T  Q  Q  T  Q  L  L  Q  V  *  I  S  I  M  Q  I  F  K  A  L  *  *  K  N  Y  L  I  *  Q  M  C  L  S  F  I  S  I  P  T  D  F  Q  V  *  F  H  K  H  S  E  I  C  L  H  S  L  N  *  T  L  V  T  T  I  S  Q  V  H  S  L  L  Q  Y  Y  S  S  Q  I  F  F  I  *  I  S  D  S  T  V  S  Q  A  Q  F  P  R  I  C  S  T  E  N  L  M  L  F  F  L  I  I  T  S  L  M  V  N  Y  L  R  V  *  G  I  P  L  L  Q  S  L  I  L  L  I  I  S  L  L  A  T  F  L  L  V  *  G  T  W  V  R  E  L  R  R  F  C  S  *  T  M  S  *  M  V  V  Y  Q  K  V  W  D  Y  G  R  I  C  K  Y  *  M  *  V  S  I  H  *  W  G  I  C  L  I  P  F  L  V  *  V  A  L  R  F  S  T  W  D  I  T  S  Y  L  E  I  Y  Q  T  W  F  V  H  *  E  T  L  *  I  *  L  L  L  T  I  S  S  L  S  *  A  K  I  V  T  N  F  H  *  E  M  W  V  L  I  S  H  *  T  V  F  Q  E  D  K  C  K  G  L  N  L  S  A  L  S  F  Q  V  E  V  L  V  A  L  E  Y  L  Q  *  S  L  L  F  V  D  E  K  I  T  I  T  G  L  S  R  A  P  T  *  T  K  K  *  K  R  K  M  K  K  L  L  L  L  L  F  Y  L  F  M  S  D  N  N  *  A  L  S  S  M  F  L  L  *  T  W  P  S  Y  D  L  Y  L  S  N  L  F  L  F  L  I  Y  L  C  C  I  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0074C08.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="107824" stop="109005"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1179</number_coding_nucleotides>
                  <number_encoded_amino_acids>393</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKMGGSCFLVLLLQIIVTQVVGVGVGVGVGVGVGVGPGGVWFGGGINSPNPGAVPSQSSAYTALQAWKSAITDDPSGILKNWVGPNVCSYKGIFCSNSQDYMGNPTDPVVTGIDLNHANLQGTLVKELSYLTDVSLIHLNTNRFSGIIPQTFRDLSSLVELDLSNNHFSGPFPTTVLFIPNLLYLDLRFNSFTGPIPEDLFNRKLDAIFLNNNQFDGELPQSLGNSPASVINFANNKFTGNIPFSLGYMGPRIKEILFLNNELNGCIPEGVGLWTDLQVLDVSFNSLMGHLPDTLSCLSGIEVLNLGHNKLSGDLPDLVCSLRNLVNLTLAYNFFSELSQDCDKLPLRNVGIDFSLNCIPGRQMQRPQPECSVIPGGSLSCLRVPAVKPLVCG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="107691" e_stop="108157"/>
            <exon e_start="108252" e_stop="109216"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.816" acc_prob="0.536" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="107691" e_stop="108157" e_length="467"/>
          </exon>
          <intron i_serial="1" don_prob="0.816" acc_prob="0.536">
            <gDNA_intron_boundary i_start="108158" i_stop="108251" i_length="94"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="108252" e_stop="109216" e_length="965"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107691" stop="107966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464968" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107696" stop="108076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440538" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107724" stop="108157"/>
              <exon start="108252" stop="108654"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689349" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107729" stop="108157"/>
              <exon start="108252" stop="108526"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107742" stop="108139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302158" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108372" stop="109065"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398793" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108424" stop="109153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389609" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108618" stop="109216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108618" stop="109212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357417" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTAGTGTAAGACGAGAGTAGCAATAAACCCCTCATTGAAGAAGCAGCACCAACTAAACCCACATCGTCTCTCATCAATGCTACAATCACATTTTGTGCAACCTTGCAAAAAAAAGAAAAGACTCTTGTTTGATCAAAAATGGGGGGAAGTTGCTTTCTGGTTTTGCTTCTTCAAATCATAGTTACTCAAGTTGTTGGTGTTGGTGTTGGTGTTGGCGTTGGCGTTGGTGTTGGTGTTGGACCTGGAGGTGTTTGGTTTGGTGGAGGGATCAACAGCCCAAACCCAGGAGCTGTCCCAAGTCAAAGTTCAGCATACACTGCTCTTCAAGCATGGAAATCTGCAATTACTGATGATCCATCGGGGATTTTGAAGAATTGGGTGGGTCCAAATGTGTGTAGTTACAAAGGAATTTTCTGCTCAAACTCTCAAGATTACATGGGCAACCCAACAGACCCAGTTGTTACAG : ATTTTCAGGTATAATTCCACAAACATTCAGAGATCTGTCTTCACTCGTTGAATTAGACCTTAGTAACAACCATTTCTCAGGTCCATTCCCTACTACAGTACTATTCATCCCAAATCTTCTTTATTTAGATCTCAGATTCAACAGTTTCACAGGCCCAATTCCCGAGGATCTGTTCAACAGAAAACTTGATGCTATTTTTCTTAATAATAACCAGTTTGATGGTGAACTACCTCAGAGTTTAGGGAATTCCCCTGCTTCAGTCATTAATTTTGCTAATAATAAGTTTACTGGCAACATTCCTTTTAGTTTAGGGTACATGGGTCCGAGAATTAAGGAGATTTTGTTCTTAAACAATGAGTTAAATGGTTGTATACCAGAAGGTGTGGGATTATGGACGGATTTGCAAGTATTAGATGTAAGTTTCAATTCACTGATGGGGCATTTGCCTGATACCCTTTCTTGTTTGAGTGGCATTGAGGTTCTCAACTTGGGACATAACAAGTTATCTGGAGATTTACCAGACTTGGTTTGTTCACTAAGAAACCTTGTGAATTTGACTCTTGCTTACAATTTCTTCTCTGAGTTGAGCCAAGATTGTGACAAACTTCCATTGAGAAATGTGGGTATTGATTTCTCATTGAACTGTATTCCAGGAAGACAAATGCAAAGGCCTCAACCTGAGTGCTCTGTCATTCCAGGTGGAAGTCTTAGTTGCCTTAGAGTACCTGCAGTAAAGCCTCTTGTTTGTGGATGAAAAAATTACTATTACCGGACTTAGCAGGGCTCCAACGTGAACTAAAAAATAAAAAAGAAAAATGAAAAAACTACTACTACTACTATTTTATTTATTTATGAGTGACAACAATTGAGCACTCTCATCAATGTTTTTGTTGTAAACCTGGCCAAGTTATGACTTGTACCTTTCAAATTTATTTCTCTTCCTTATTTATTTATGTTGCATTATG</gDNA_template>
            <first_frame> C  S  V  R  R  E  *  Q  *  T  P  H  *  R  S  S  T  N  *  T  H  I  V  S  H  Q  C  Y  N  H  I  L  C  N  L  A  K  K  R  K  D  S  C  L  I  K  N  G  G  K  L  L  S  G  F  A  S  S  N  H  S  Y  S  S  C  W  C  W  C  W  C  W  R  W  R  W  C  W  C  W  T  W  R  C  L  V  W  W  R  D  Q  Q  P  K  P  R  S  C  P  K  S  K  F  S  I  H  C  S  S  S  M  E  I  C  N  Y  *  *  S  I  G  D  F  E  E  L  G  G  S  K  C  V  *  L  Q  R  N  F  L  L  K  L  S  R  L  H  G  Q  P  N  R  P  S  C  Y  R :   F  S  G  I  I  P  Q  T  F  R  D  L  S  S  L  V  E  L  D  L  S  N  N  H  F  S  G  P  F  P  T  T  V  L  F  I  P  N  L  L  Y  L  D  L  R  F  N  S  F  T  G  P  I  P  E  D  L  F  N  R  K  L  D  A  I  F  L  N  N  N  Q  F  D  G  E  L  P  Q  S  L  G  N  S  P  A  S  V  I  N  F  A  N  N  K  F  T  G  N  I  P  F  S  L  G  Y  M  G  P  R  I  K  E  I  L  F  L  N  N  E  L  N  G  C  I  P  E  G  V  G  L  W  T  D  L  Q  V  L  D  V  S  F  N  S  L  M  G  H  L  P  D  T  L  S  C  L  S  G  I  E  V  L  N  L  G  H  N  K  L  S  G  D  L  P  D  L  V  C  S  L  R  N  L  V  N  L  T  L  A  Y  N  F  F  S  E  L  S  Q  D  C  D  K  L  P  L  R  N  V  G  I  D  F  S  L  N  C  I  P  G  R  Q  M  Q  R  P  Q  P  E  C  S  V  I  P  G  G  S  L  S  C  L  R  V  P  A  V  K  P  L  V  C  G  *  K  N  Y  Y  Y  R  T  *  Q  G  S  N  V  N  *  K  I  K  K  K  N  E  K  T  T  T  T  T  I  L  F  I  Y  E  *  Q  Q  L  S  T  L  I  N  V  F  V  V  N  L  A  K  L  *  L  V  P  F  K  F  I  S  L  P  Y  L  F  M  L  H  Y  </first_frame>
            <second_frame>  V  V  *  D  E  S  S  N  K  P  L  I  E  E  A  A  P  T  K  P  T  S  S  L  I  N  A  T  I  T  F  C  A  T  L  Q  K  K  E  K  T  L  V  *  S  K  M  G  G  S  C  F  L  V  L  L  L  Q  I  I  V  T  Q  V  V  G  V  G  V  G  V  G  V  G  V  G  V  G  V  G  P  G  G  V  W  F  G  G  G  I  N  S  P  N  P  G  A  V  P  S  Q  S  S  A  Y  T  A  L  Q  A  W  K  S  A  I  T  D  D  P  S  G  I  L  K  N  W  V  G  P  N  V  C  S  Y  K  G  I  F  C  S  N  S  Q  D  Y  M  G  N  P  T  D  P  V  V  T   : D  F  Q  V  *  F  H  K  H  S  E  I  C  L  H  S  L  N  *  T  L  V  T  T  I  S  Q  V  H  S  L  L  Q  Y  Y  S  S  Q  I  F  F  I  *  I  S  D  S  T  V  S  Q  A  Q  F  P  R  I  C  S  T  E  N  L  M  L  F  F  L  I  I  T  S  L  M  V  N  Y  L  R  V  *  G  I  P  L  L  Q  S  L  I  L  L  I  I  S  L  L  A  T  F  L  L  V  *  G  T  W  V  R  E  L  R  R  F  C  S  *  T  M  S  *  M  V  V  Y  Q  K  V  W  D  Y  G  R  I  C  K  Y  *  M  *  V  S  I  H  *  W  G  I  C  L  I  P  F  L  V  *  V  A  L  R  F  S  T  W  D  I  T  S  Y  L  E  I  Y  Q  T  W  F  V  H  *  E  T  L  *  I  *  L  L  L  T  I  S  S  L  S  *  A  K  I  V  T  N  F  H  *  E  M  W  V  L  I  S  H  *  T  V  F  Q  E  D  K  C  K  G  L  N  L  S  A  L  S  F  Q  V  E  V  L  V  A  L  E  Y  L  Q  *  S  L  L  F  V  D  E  K  I  T  I  T  G  L  S  R  A  P  T  *  T  K  K  *  K  R  K  M  K  K  L  L  L  L  L  F  Y  L  F  M  S  D  N  N  *  A  L  S  S  M  F  L  L  *  T  W  P  S  Y  D  L  Y  L  S  N  L  F  L  F  L  I  Y  L  C  C  I  M </second_frame>
            <third_frame>   *  C  K  T  R  V  A  I  N  P  S  L  K  K  Q  H  Q  L  N  P  H  R  L  S  S  M  L  Q  S  H  F  V  Q  P  C  K  K  K  K  R  L  L  F  D  Q  K  W  G  E  V  A  F  W  F  C  F  F  K  S  *  L  L  K  L  L  V  L  V  L  V  L  A  L  A  L  V  L  V  L  D  L  E  V  F  G  L  V  E  G  S  T  A  Q  T  Q  E  L  S  Q  V  K  V  Q  H  T  L  L  F  K  H  G  N  L  Q  L  L  M  I  H  R  G  F  *  R  I  G  W  V  Q  M  C  V  V  T  K  E  F  S  A  Q  T  L  K  I  T  W  A  T  Q  Q  T  Q  L  L  Q  :  I  F  R  Y  N  S  T  N  I  Q  R  S  V  F  T  R  *  I  R  P  *  *  Q  P  F  L  R  S  I  P  Y  Y  S  T  I  H  P  K  S  S  L  F  R  S  Q  I  Q  Q  F  H  R  P  N  S  R  G  S  V  Q  Q  K  T  *  C  Y  F  S  *  *  *  P  V  *  W  *  T  T  S  E  F  R  E  F  P  C  F  S  H  *  F  C  *  *  *  V  Y  W  Q  H  S  F  *  F  R  V  H  G  S  E  N  *  G  D  F  V  L  K  Q  *  V  K  W  L  Y  T  R  R  C  G  I  M  D  G  F  A  S  I  R  C  K  F  Q  F  T  D  G  A  F  A  *  Y  P  F  L  F  E  W  H  *  G  S  Q  L  G  T  *  Q  V  I  W  R  F  T  R  L  G  L  F  T  K  K  P  C  E  F  D  S  C  L  Q  F  L  L  *  V  E  P  R  L  *  Q  T  S  I  E  K  C  G  Y  *  F  L  I  E  L  Y  S  R  K  T  N  A  K  A  S  T  *  V  L  C  H  S  R  W  K  S  *  L  P  *  S  T  C  S  K  A  S  C  L  W  M  K  K  L  L  L  P  D  L  A  G  L  Q  R  E  L  K  N  K  K  E  K  *  K  N  Y  Y  Y  Y  Y  F  I  Y  L  *  V  T  T  I  E  H  S  H  Q  C  F  C  C  K  P  G  Q  V  M  T  C  T  F  Q  I  Y  F  S  S  L  F  I  Y  V  A  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0074C08.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108090" stop="108157"/>
                    <exon start="108252" stop="109005"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>819</number_coding_nucleotides>
                  <number_encoded_amino_acids>273</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LQRNFLLKLSRLHGQPNRPSCYRFSGIIPQTFRDLSSLVELDLSNNHFSGPFPTTVLFIPNLLYLDLRFNSFTGPIPEDLFNRKLDAIFLNNNQFDGELPQSLGNSPASVINFANNKFTGNIPFSLGYMGPRIKEILFLNNELNGCIPEGVGLWTDLQVLDVSFNSLMGHLPDTLSCLSGIEVLNLGHNKLSGDLPDLVCSLRNLVNLTLAYNFFSELSQDCDKLPLRNVGIDFSLNCIPGRQMQRPQPECSVIPGGSLSCLRVPAVKPLVCG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0074C08.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="107748" stop="108041"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>291</number_coding_nucleotides>
                  <number_encoded_amino_acids>97</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>THIVSHQCYNHILCNLAKKRKDSCLIKNGGKLLSGFASSNHSYSSCWCWCWCWRWRWCWCWTWRCLVWWRDQQPKPRSCPKSKFSIHCSSSMEICNY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="107982" PGL_stop="107728"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="107982" e_stop="107728"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.957"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.957">
            <gDNA_exon_boundary e_start="107982" e_stop="107728" e_length="255"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107982" stop="107728"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277148" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGCTCCTGGGTTTGGGCTGTTGATCCCTCCACCAAACCAAACACCTCCAGGTCCAACACCAACACCAACGCCAACGCCAACACCAACACCAACACCAACAACTTGAGTAACTATGATTTGAAGAAGCAAAACCAGAAAGCAACTTCCCCCCATTTTTGATCAAACAAGAGTCTTTTCTTTTTTTTGCAAGGTTGCACAAAATGTGATTGTAGCATTGATGAGAGACGATGTGGGTTTAGTTGGTGCTGCTTCTTC</gDNA_template>
            <first_frame> S  S  W  V  W  A  V  D  P  S  T  K  P  N  T  S  R  S  N  T  N  T  N  A  N  A  N  T  N  T  N  T  N  N  L  S  N  Y  D  L  K  K  Q  N  Q  K  A  T  S  P  H  F  *  S  N  K  S  L  F  F  F  L  Q  G  C  T  K  C  D  C  S  I  D  E  R  R  C  G  F  S  W  C  C  F  F </first_frame>
            <second_frame>  A  P  G  F  G  L  L  I  P  P  P  N  Q  T  P  P  G  P  T  P  T  P  T  P  T  P  T  P  T  P  T  P  T  T  *  V  T  M  I  *  R  S  K  T  R  K  Q  L  P  P  I  F  D  Q  T  R  V  F  S  F  F  C  K  V  A  Q  N  V  I  V  A  L  M  R  D  D  V  G  L  V  G  A  A  S   </second_frame>
            <third_frame>   L  L  G  L  G  C  *  S  L  H  Q  T  K  H  L  Q  V  Q  H  Q  H  Q  R  Q  R  Q  H  Q  H  Q  H  Q  Q  L  E  *  L  *  F  E  E  A  K  P  E  S  N  F  P  P  F  L  I  K  Q  E  S  F  L  F  F  A  R  L  H  K  M  *  L  *  H  *  *  E  T  M  W  V  *  L  V  L  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0074C08.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 229 chains have been computed
$ 
$ memory statistics:
$ 81280 bytes spliced alignments in total
$ 40 spliced alignments have been stored
$ 2032 bytes was the average size of a spliced alignment
$ 11848 bytes predicted gene locations in total
$ 6 predicted gene locations have been stored
$ 1974 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 298 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-19 08:31:42
-->
