<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 13:24:25"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09HBa0113I06-139un/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C09HBa0113I06-139un/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U343359" ref_strand="+" ref_description="SGN-U343359        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | lipin family protein, contains Pfam profile: PF04571 lipin, N-terminal conserved region | chr3:2934622-2939461 REVERSE | Aliases: F11F8.14(evalue: 7e-11, score=64.7) genbank/nr: unknown(evalue: 5e-09, score=64.7)">
      <seq>tttcatctgggacctggtcaggggactgatttttgtgatgatagctcagaatttaattcgggtgatagtacatgggctgatgattatttcagcaatctgaactcatccaaagttgcatcaggggacacttgcgacgtgaaaaatgagagcactacagttgagcaccagttagaagtttctgaagtagatgggaaacatcttgatcgaactccggaagatgacctgaagaaccgggaagaagatctttccatgaagagtactgtggagagcacatcatgcagcattaagagggatgatgttttcaagagctgtctagagctatctgcattagccatgcaggctgaagatgaggttaatcagtcagatacggtttctcagtcggatattcagggagttgttgaagatgtaaaggagacgtctcataggagtccttctgcaatcagtgccgaagatatacatcctgagaaattgggaaatgaaaatggcactcatgattctgacagtgtaacccttcagaaaagtgacttggacgtagagcataatgcttcagatagtgcaagagaccatccttttatgaatgatgaacagtcaaaggaacatgctgatttaacagtagcagcagagcaggcacaaagtgaactgcaaggattcgatgaaagcaccgaacgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0113I06.1" temp_strand="+" temp_description="C09HBa0113I06.1  AC217787.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0113I06 upload_account_name:spain (1 - 94375)">
        <position start="11627" stop="12895"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11927" g_stop="12595" g_length="669"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="669" r_length="669" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0113I06.1" gen_strand="+" ref_id="SGN-U343359" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0113I06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U343359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11927" e_stop="12595"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCATCTGGGACCTGGTCAGGGGACTGATTTTTGTGATGATAGCTCAGAATTTAATTCGGGTGATAGTACATGGGCTGATGATTATTTCAGCAATCTGAACTCATCCAAAGTTGCATCAGGGGACACTTGCGACGTGAAAAATGAGAGCACTACAGTTGAGCACCAGTTAGAAGTTTCTGAAGTAGATGGGAAACATCTTGATCGAACTCCGGAAGATGACCTGAAGAACCGGGAAGAAGATCTTTCCATGAAGAGTACTGTGGAGAGCACATCATGCAGCATTAAGAGGGATGATGTTTTCAAGAGCTGTCTAGAGCTATCTGCATTAGCCATGCAGGCTGAAGATGAGGTTAATCAGTCAGATACGGTTTCTCAGTCGGATATTCAGGGAGTTGTTGAAGATGTAAAGGAGACGTCTCATAGGAGTCCTTCTGCAATCAGTGCCGAAGATATACATCCTGAGAAATTGGGAAATGAAAATGGCACTCATGATTCTGACAGTGTAACCCTTCAGAAAAGTGACTTGGACGTAGAGCATAATGCTTCAGATAGTGCAAGAGACCATCCTTTTATGAATGATGAACAGTCAAAGGAACATGCTGATTTAACAGTAGCAGCAGAGCAGGCACAAAGTGAACTGCAAGGATTCGATGAAAGCACCGAACGT</genome_strand>
        <mrna_strand>TTTCATCTGGGACCTGGTCAGGGGACTGATTTTTGTGATGATAGCTCAGAATTTAATTCGGGTGATAGTACATGGGCTGATGATTATTTCAGCAATCTGAACTCATCCAAAGTTGCATCAGGGGACACTTGCGACGTGAAAAATGAGAGCACTACAGTTGAGCACCAGTTAGAAGTTTCTGAAGTAGATGGGAAACATCTTGATCGAACTCCGGAAGATGACCTGAAGAACCGGGAAGAAGATCTTTCCATGAAGAGTACTGTGGAGAGCACATCATGCAGCATTAAGAGGGATGATGTTTTCAAGAGCTGTCTAGAGCTATCTGCATTAGCCATGCAGGCTGAAGATGAGGTTAATCAGTCAGATACGGTTTCTCAGTCGGATATTCAGGGAGTTGTTGAAGATGTAAAGGAGACGTCTCATAGGAGTCCTTCTGCAATCAGTGCCGAAGATATACATCCTGAGAAATTGGGAAATGAAAATGGCACTCATGATTCTGACAGTGTAACCCTTCAGAAAAGTGACTTGGACGTAGAGCATAATGCTTCAGATAGTGCAAGAGACCATCCTTTTATGAATGATGAACAGTCAAAGGAACATGCTGATTTAACAGTAGCAGCAGAGCAGGCACAAAGTGAACTGCAAGGATTCGATGAAAGCACCGAACGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U320748" ref_strand="+" ref_description="SGN-U320748        Tomato 200607 #1 [9 ESTs aligned] arabidopsis/peptide: | Symbol: None | lipin family protein, contains Pfam profile: PF04571 lipin, N-terminal conserved region | chr3:2934622-2939461 REVERSE | Aliases: F11F8.14(evalue: 3e-156, score=548) genbank/nr: unknown(evalue: 3e-154, score=548)">
      <seq>tttaacagtagcagcagagcaggcacaaagtgaactgcaaggattcgatgaaagcaccgaacgtgataatgtggagcagcagactgcagctttgcttaaaggagtagagatatctctttgtaggcacttgcttcatgctgggatgggttccgctgctgctagagaagcctttgaggcaaatcgcgtttctgaggaggtattcagaaactccgcaaaatccatgataaacaatccaaatttagctgtccgaattcaaggaaattatttacaatgggacaaagctgcacctatcgttctcgggatggctgcgtacaatatggaattacctgttgactccactgacgtcatacccgtggagcaggacaagaacctaaaaacaggagaggatgatagtgggttgccttcaactcctggtcgacgatggaggctttggccaatgccatttagaagagttaagacaatcgaacacactaccagtaatctatcaaatgaagaggtgtttgttgattctgaatcaatctcaccgaaccagcctacagaacaaacagcatcaccacaaggaggaaaggaatctcctcgcaagcaacttgtgagaacaaatgtcccttctactggtcaaattgaatctttaaaactgaaagagggtcagaatttggtgactttcattttttccactcgagtcctgggagaccaaaaggttgaagcccatatatatttgtggaagtggaatactcggattgtaatttctgatgttgatgggactattaccaagtctgatgttcttggtcagttcatgccgttggttggaaaggattggacccactccggaatcgctagacttttctgtgcaatcaaggaaaacggatatcagctactctttctcagtgcacgagcaattgttcaagcttatctgaccaaaagttttctgttcaatctcaaacaggatgggaaatcattaccacctggacctgttgttatttcacctgatggtttatttccctcattgtacagagaagttataagaagagctcctcatgaattcaagattgcatgcttagaggacataaaagcactttttccaccagactataaccctttttatgcgggattcgggaatagggacactgatgagctcagttacaggaaaattggaattccaaaaggcaaaatttttataataaacccaaagggggaggtagctattaaccaccaaatcgacgtgaaatcctatacttcattacacactctagttaatgacatgttccctcctacatccatggttgagcaggaagattataacttatggaactactggaaaatgcccctggcagacgtcgataacttgtagagatttcttcccctcgtaccgatggatccaccttttttgttgatctgagaagtcgaaaagcttagccggtatatgtataaccaactacctgcagtttcttttgtaggagagctgccattcttctttgtttctattattaaggtgtataaaattcagctatgtaggttctcattacattgtactcaaaaaggcataaagttcttgctcatgaataaaattttactttctaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0113I06.1" temp_strand="+" temp_description="C09HBa0113I06.1  AC217787.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0113I06 upload_account_name:spain (1 - 94375)">
        <position start="12232" stop="19276"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12532" g_stop="12632" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12633" i_stop="12774" i_length="142">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12775" g_stop="13370" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="697" r_length="596" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13371" i_stop="13446" i_length="76">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13447" g_stop="13520" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="698" r_stop="771" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13521" i_stop="14162" i_length="642">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.794" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14163" g_stop="14247" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="772" r_stop="856" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14248" i_stop="15894" i_length="1647">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15895" g_stop="15981" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="857" r_stop="943" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15982" i_stop="17513" i_length="1532">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17514" g_stop="17586" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="944" r_stop="1016" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="17587" i_stop="17795" i_length="209">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="17796" g_stop="17839" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1017" r_stop="1060" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="17840" i_stop="18108" i_length="269">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="18109" g_stop="18237" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1061" r_stop="1189" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="18238" i_stop="18333" i_length="96">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="18334" g_stop="18432" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1190" r_stop="1288" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="18433" i_stop="18687" i_length="255">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="18688" g_stop="18975" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="1289" r_stop="1576" r_length="288" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1577" polyA_stop="1593"/>
      <MATCH_line gen_id="C09HBa0113I06.1" gen_strand="+" ref_id="SGN-U320748" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1576</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0113I06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U320748" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12532" e_stop="12632"/>
          <exon e_start="12775" e_stop="13370"/>
          <exon e_start="13447" e_stop="13520"/>
          <exon e_start="14163" e_stop="14247"/>
          <exon e_start="15895" e_stop="15981"/>
          <exon e_start="17514" e_stop="17586"/>
          <exon e_start="17796" e_stop="17839"/>
          <exon e_start="18109" e_stop="18237"/>
          <exon e_start="18334" e_stop="18432"/>
          <exon e_start="18688" e_stop="18975"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAACAGTAGCAGCAGAGCAGGCACAAAGTGAACTGCAAGGATTCGATGAAAGCACCGAACGTGATAATGTGGAGCAGCAGACTGCAGCTTTGCTTAAAGGTACATAAACTGATTCAAGCACAAGAAAGAGTGCCTCCTGTATTTTTTTTAATTAAAAAAATTATAGTGTTTCATCTAGCTGGTCAATTTAATTAATTCTTCTTCTCACTATGTTCACATATTTTGTTAGTGATATCTGCAGGAGTAGAGATATCTCTTTGTAGGCACTTGCTTCATGCTGGGATGGGTTCCGCTGCTGCTAGAGAAGCCTTTGAGGCAAATCGCGTTTCTGAGGAGGTATTCAGAAACTCCGCAAAATCCATGATAAACAATCCAAATTTAGCTGTCCGAATTCAAGGAAATTATTTACAATGGGACAAAGCTGCACCTATCGTTCTCGGGATGGCTGCATACAATATGGAATTACCTGTTGACTCCACTGACGTCATACCCGTGGAGCAGGACAAGAACCTAAAAACAGGAGAGGATGATAGTGGGTTGCCTTCAACTCCTGGTCGACGATGGAGGCTTTGGCCAATGCCATTTAGAAGAGTTAAGACAATCGAACACACTACCAGTAATCTATCAAATGAAGAGGTGTTTGTTGATTCTGAATCAATCTCACCGAACCAGCCTACAGAACAAACAGCATCACCACAAGGAGGAAAGGAATCTCCTCGCAAGCAACTTGTGAGAACAAATGTCCCTTCTACTGGTCAAATTGAATCTTTAAAACTGAAAGAGGGTCAGAATTTGGTGACTTTCATTTTTTCCACTCGAGTCCTGGGAGACCAAAAGGTTTGTTGTGTTACTTGTGGCAAATTCATTAACTTCAGAAAAATGTAGTCTTTTTATTGTTTTGGTCTTAAAACAGGTTGAAGCCCATATATATTTGTGGAAGTGGAATACTCGGATTGTAATTTCTGATGTTGATGGGACTATTACCAAGTAAGCCTTTTTGATCATTATACCTCAAGCTGCAAAAAATTGTTAGCCTTTACATACTATCTAAGAGGTTGTCTCTTACCTGATGAGTCGCTTGCAAGATGAGTGGTGAAGCCAAGATTTCATTGAGGGGTTCAAAATATGACAAGTAAACACATGAAGAATCAAAGGAGGGTTCAAGATCTATTATATATTCATAAATTTCGTTTTTATAATTTTAAGCATGTATAAACACCGTATTTTTCCGCCGAACGTGACCTAACTGCTTCCGCCCCTGTGCAAGAACCTCTATCATGCTAGAAACTTAATAAATTAAAGCCAGTCCACTCTTCAGATTTTATAGGATAACTAGTTTCACATGTCCAAAATTCTCACCTTTAAGCTGATGTGAGAAACCAATATCTTTTTGTGAAGTTTTCTACTTTTTGATATACTTCTTGTATACCTGCATGTTTCTCCCTTCATTTAATAAATTTTAATACACAATGAAAAAAACTGATTTGAGAGCATAAAAGGATATTAAATAGAACTGTTTGTTGGAACATTTTCTCATTCTGGTATAGTCTTACACTACTATGTACCTAGTAGACCTGAATGAGGACATGCTCTCTAACGTAACTTAACAAGTGCATATTTTATGTCTAGGTCTGATGTTCTTGGTCAGTTCATGCCGTTGGTTGGAAAGGATTGGACCCACTCCGGAATCGCTAGACTTTTCTGTGCAATCAAGGTATTCCTTTCTCTGTCCTATATTTGGACTTCTCTTCGTCTTTAAGTCATCATATCAACTAAGCTTCGAACCATTCTTATATTTGACAACTAATACCTTAACCATGGAAAACACTTTCCTAGACAAGTAGTGTGGCAACAAGTAGCATCAAGTACCACCAAGTGTATTCATTATTGTCATAACATAGTAATCCTGCATCTTTTTCTATTAATACATTTCTATTATTCATGTGGCAAGTCAACTGTTGTATTGCCTTTGTGATATATGATTCTGCATGAATGTAGATATCAACATATTTTGGGAATTCATGTCCTTGAACATGTTTGCTGACTTATTGTGGCTATAGATTATTTTATGCTGTTTTTCAGATAACTTGTGGCAAAGTGATTACCCTAGCATTTGATCTTTACCATACCTATGCTTAGTGATCAAAATATTTCATGAATTGGATTTGTTGATCATCTAAGCTAGTATTCGGAAAGTAAATTTATCCTGAATTGTTAGTTTAGTTAGGGTTACCTATGGAAAGATTGTCATTCATTGTTATGTGGAAAGGGTTTGGAGTGGGAATGTGGCAATTCAGGATTTGATGAGTCAGCTTGAGGTAGGGGTAAGGTGTGTGTACATTCTACCCTCCCAGACCCAACTTGTGGATTACACTGGGTATGCTGGTGTATGCTTCAGCACGAGAAAAATGTTGCAGGGTGGCTATGCCCATGACACTTAATGGGATTGATAAACACGTCAGCCAGAGATGAGCAGGAAACCTATTTAACGTATGTAGAGAGGAAGGTAAAACATTGATGGTATCATATAGAGTTTATCCATATAAAAAAATGGGGAAGAACTAAGGTTTTAGTAAGCAAGCATGGAAGAATTATAAGATAATTAGATAGAAGGTCCTGTGTTCAAGTTACCACAACTTTAGATGAAGTATGGCAGGCTAATCCACAGACTCACCCGTACAGGATGACAAGACCCTTATATAAGATATTTGCTTAGGTGAGATCTGCAATGTTACATACCTCACGGCACAGTATTTGATTCAACATATTGGACACTGTACAGTGTGCAGAAGTTGGGTCAAAGAGTAATATATATATAGTATGAACTCTTGTATCTCCTTTCCCTCTTTATTCTTCGTTTGTTGCTGGGTGAGAAGAGGGGGGAGTAAGAGCCATAAGAAATTATGGAACATGATACCCTCTTGTATATGGTGGACTATTTGGAGAGAAAGAAACCAGAGGTGTATGGAAGATACTGCGGAATCAGTACAAAAGATCAAATGGCGTTGTATGAAGACCTTCTGTTTTTTGGTGTAATGAGGAGGTTATAGAGGATGCTGGACAGATTTTAAACTTTTTCTCTTCTTTACAAGTTTAGTAGCAATTTCTTGAGTTTTTTTTTTTTGGTCACTGATGTAAATCTTTTTGATGGTTGCCAGCATATCCTCATTGCTGAGGAATATAACTTTACTTTATCAACAAAGAAAATTCTTCATTTGTTAATTTTTTGTAGATATGAAGTAGTATGATCGACTGACACGAAGCTGGTTTAATGTTTATGATCTCTCACTTCCATATTCATTGATGTTGAACTATTTTTCTCCATTATTTTATTGATGGATGAGCTTTCTCTTGATTGCAGGAAAACGGATATCAGCTACTCTTTCTCAGTGCACGAGCAATTGTTCAAGCTTATCTGACCAAAAGTTTTCTGTTCAATCTCAAACAGGTAATCATAATTCAGTTTACATGAAATACCGATGACACTAGTTTTTAGTTTCCTAAAAGATGCAGAATATTTATTTGAATCTCAAGGGAGCATGTCAGTTGGATTTTCTGTTACATGTAGGACCATTTCTCGATTCATATGTTTCTGAAGGGACTGTCATATGTACGGCTGTAAATTGTTTGGTTTAAACCACGAGAAATGACCAAGCCAAAAATCTTGGTCTGTTTGGTACTGCTTTCTTGTGTTTTTTTAAATAAAAATTATGTTTGGTTTCTGTTTGTTTTGATTCTCTCTGCAGGGGTTTCTGTTTTCCAACGCGGTTTCCTTTTTCTTTCCTTTTTAATTTAGAAAAAGAGAACACTGAAATTAGGGATATGCATAGTTTATCCAGGTATCAGTTTCCTTCACTTCCCCCCTCACTCCATCTCTGTCTCTCACTTCTTCTCCACACTTCAAGGCGAGACTAGAACATGATCAAATGAACACCCTAGAAATGTAGGTGAAACATTGATAATCTAAGATCTAAAAACCGATGTTATTGCGAATCATATACAAAATCTTTTCTTTTTCCAGTCTTAGCAAACATACTACCTCAGAAGGGCTTCAAGAAGCTTTTTCCAAATTTGGTGAGGTGTTACACGCCATAGGCTGTTTATCCCTGGCTATGCATGAAACTTCGAAACAGTGATTTTTTTCATTGAATTGATAGTTGCCATATCAGTCGGCATCTATCAACTAATCATCTATCTCAAATTATATGTTGACCGTTAACTACTCCAAACTTCCTCCTTATCAGGCAGGCTTGGGACCTGCTATGTGTAGCTTGAGTTTTAAGGTTGCTATGTCTATTAAAAAGAAAAATAGAAGAGACAACATCAGCACATCTCCCTTAGCTGTTTTTGTGAATCACAACAGCTCATTTTTGTGTATTTCTTTAGTCTTGAGAAATTGAGCAACTTGAAGGTGCAACCAAAAATCTAGAGAACTATCAAAAATAACAGCCTTGTTGTCAACTTGCCTTCCTCACTATTTAAATCTAGTTTTTATTCTTATTTAAGAAGTTCCCAGATTTGAAGTTCTGGCTTTATTTCCTGCGTGGGTGTAGCATACTGCTCCAATAAACTCATCAAAGAAAGAGAGGCTCTAATAGAACTGTTGATTGGTTTGTCAATCTACTAACAGAAAATCAAATAATATGACAGAATTTGCTCAAAACTCACCAACTGATTGACTACTGCCATATTTACACGTTTTGAGTACTTGTGGTGGTGGAACTGAGATTTAGCCTTTACTAGCCTTTCTTTTCATTTTTTCTCTCCATGTTTTCCTGTTCTCAGACCTTACAATTGTTTTTTCTTTCTTTTGTGGGGAAAGGAGTTTCTGAGGATGCATTTTATCTAACACTACTGTGGCTCAACTGTATAGACCATCTTAGCAAATCTTGGATCTGGCCTCTGTTTGCTTGTCCTTTCTTGTAGATTTCTGATTGTGCAACAAATTTCACTAACCTGAAATGTGTAAACGATCTGTAGGATGGGAAATCATTACCACCTGGACCTGTTGTTATTTCACCTGATGGTTTATTTCCCTCATTGTACAGAGAAGGTTAGTACAAATTTGCTAAAAGTCCTTTTTTGGCTTTAGTCTTTGTCAAAGTGCATTATGTACGCATATGCCAATTTCACATGTTTCTTGGTGTTTAGTTTCACGAGAGTTACCCGAAATCTTCAGCTCTTTTGCTGATATGATAAAGAAGGAATTGCCTATATTTGATCTCTAACAAGATTTACCTTTTCTCTTCTATGTCATGGCAGTTATAAGAAGAGCTCCTCATGAATTCAAGATTGCATGCTTAGAGGTTTGTATTCAAAATAGTGATGGTTCTTTCAGGTGTCTTTTAGTATGCATGAATGTATGAAGCGGATATTACCAAGTAGAGTATGAAGTGGATATTACCAAGTAGAGATTTTACATCTTATCTGCCTAATCCTGATAGTTCTAAAAAAAATTAATACATATACCTAATCCAGATCTTATGCTGCATACCAAATGACGCCCTCTTGGATTCGATCCTTTTGTATCTCTCCAGTGGTTTGCCACCTTCTAATGTATTCTTCTACATTTCAGGACATAAAAGCACTTTTTCCACCAGACTATAACCCTTTTTATGCGGGATTCGGGAATAGGGACACTGATGAGCTCAGTTACAGGAAAATTGGAATTCCAAAAGGCAAAATTTTTATAATAAACCCAAAGGTTTGAACTCTTTCCTTTGCTTTATTGTTGAAAAACTTTATGTACAGTTTGTCAAGTTTTACACTCTTGTCTAACATGTTGAAATTGGACTTACAGGGGGAGGTAGCTATTAACCACCAAATCGACGTGAAATCCTATACTTCATTACACACTCTAGTTAATGACATGTTCCCTCCTACATCCATGGTTGAGCAGGTTAGTGCTCGATGACTCTCGTTTTTAATATCTCATCTTTGTTTGTTCTAAAGTAAGTTATTAGCATAGACAATCTCATTTAGAGACTCGAAAGCATCTGGTTAGACATGCATAGTCATTCTTTTCTGTTTGCACGCGTTATGCAAAGAACCAACTTTTCATTCACTGGTTATCTTTGAGCTTCAACTCTTCTATACAGTCTTTCAACGGGGGCCATCTCCATGACATTGTTCTGGATTTTCATTGTAAATGCAGGAAGATTATAACTTATGGAACTACTGGAAAATGCCCCTGGCAGACGTCGATAACTTGTAGAGATTTCTTCCCCTCGTACCGATGGATCCACCTTTTTTGTTGATCTGAGAAGTCGAAAAGCTTAGCCGGTATATGTATAACCAACTACCTGCAGTTTCTTTTGTAGGAGAGCTGCCATTCTTCTTTGTTTCTATTATTAAGGTGTATAAAATTCAGCTATGTAGGTTCTCATTACATTGTACTCAAAAAGGCATAAAGTTCTTGCTCATGAATAAAATTTTACTTTCT</genome_strand>
        <mrna_strand>TTTAACAGTAGCAGCAGAGCAGGCACAAAGTGAACTGCAAGGATTCGATGAAAGCACCGAACGTGATAATGTGGAGCAGCAGACTGCAGCTTTGCTTAAAG..............................................................................................................................................GAGTAGAGATATCTCTTTGTAGGCACTTGCTTCATGCTGGGATGGGTTCCGCTGCTGCTAGAGAAGCCTTTGAGGCAAATCGCGTTTCTGAGGAGGTATTCAGAAACTCCGCAAAATCCATGATAAACAATCCAAATTTAGCTGTCCGAATTCAAGGAAATTATTTACAATGGGACAAAGCTGCACCTATCGTTCTCGGGATGGCTGCGTACAATATGGAATTACCTGTTGACTCCACTGACGTCATACCCGTGGAGCAGGACAAGAACCTAAAAACAGGAGAGGATGATAGTGGGTTGCCTTCAACTCCTGGTCGACGATGGAGGCTTTGGCCAATGCCATTTAGAAGAGTTAAGACAATCGAACACACTACCAGTAATCTATCAAATGAAGAGGTGTTTGTTGATTCTGAATCAATCTCACCGAACCAGCCTACAGAACAAACAGCATCACCACAAGGAGGAAAGGAATCTCCTCGCAAGCAACTTGTGAGAACAAATGTCCCTTCTACTGGTCAAATTGAATCTTTAAAACTGAAAGAGGGTCAGAATTTGGTGACTTTCATTTTTTCCACTCGAGTCCTGGGAGACCAAAAG............................................................................GTTGAAGCCCATATATATTTGTGGAAGTGGAATACTCGGATTGTAATTTCTGATGTTGATGGGACTATTACCAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGATGTTCTTGGTCAGTTCATGCCGTTGGTTGGAAAGGATTGGACCCACTCCGGAATCGCTAGACTTTTCTGTGCAATCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAACGGATATCAGCTACTCTTTCTCAGTGCACGAGCAATTGTTCAAGCTTATCTGACCAAAAGTTTTCTGTTCAATCTCAAACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGAAATCATTACCACCTGGACCTGTTGTTATTTCACCTGATGGTTTATTTCCCTCATTGTACAGAGAAG.................................................................................................................................................................................................................TTATAAGAAGAGCTCCTCATGAATTCAAGATTGCATGCTTAGAG.............................................................................................................................................................................................................................................................................GACATAAAAGCACTTTTTCCACCAGACTATAACCCTTTTTATGCGGGATTCGGGAATAGGGACACTGATGAGCTCAGTTACAGGAAAATTGGAATTCCAAAAGGCAAAATTTTTATAATAAACCCAAAG................................................................................................GGGGAGGTAGCTATTAACCACCAAATCGACGTGAAATCCTATACTTCATTACACACTCTAGTTAATGACATGTTCCCTCCTACATCCATGGTTGAGCAG...............................................................................................................................................................................................................................................................GAAGATTATAACTTATGGAACTACTGGAAAATGCCCCTGGCAGACGTCGATAACTTGTAGAGATTTCTTCCCCTCGTACCGATGGATCCACCTTTTTTGTTGATCTGAGAAGTCGAAAAGCTTAGCCGGTATATGTATAACCAACTACCTGCAGTTTCTTTTGTAGGAGAGCTGCCATTCTTCTTTGTTTCTATTATTAAGGTGTATAAAATTCAGCTATGTAGGTTCTCATTACATTGTACTCAAAAAGGCATAAAGTTCTTGCTCATGAATAAAATTTTACTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U328234" ref_strand="+" ref_description="SGN-U328234        Tomato 200607 #1 [3 ESTs aligned]">
      <seq>aaagttttctgttcaatctcaaacaggtaatcataattcagtttacatgaaataccgatgacactagtttttagtttcctaaaagatgcagaatatttatttgaatctcaagggagcatgtcagttggattttctgttacatgtaggaccatttctcgattcatatgtttctgaagggactgtcatatgtacggctgtaaattgtttggtttaaaccacgagaaatgaccaagccaaaaatcttggtctgtttggtactgctttcttgtgtttttttaaataaaaattatgtttggtttctgtttgttttgattctctctgcaggggtttctgttttccaacgcggtttcctttttctttcctttttaatttagaaaaagagaacactgaaattagggatatgcatagtttatccaggtatcagtttccttcacttcccccctcactccatctctgtctctcacttcttctccacacttcaaggcgagactagaacatgatcaaatgaacaccctagaaatgtaggtgaaacattgataatctaagatctaaaaaccgatgttattgcgaatcatatacaaaatcttttctttttccagtcttagcaaacatactacctcagaagggcttcaagaagctttttccaaatttggtgaagtgttacacgccatangctgtttatccctggctatgcatgaaacttcgaaacagtgatttttttcattggattgatagttgccatatcagtcggcatctatcaactaatcatctatctcaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0113I06.1" temp_strand="+" temp_description="C09HBa0113I06.1  AC217787.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0113I06 upload_account_name:spain (1 - 94375)">
        <position start="15656" stop="17035"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15956" g_stop="16735" g_length="780"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="780" r_length="780" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0113I06.1" gen_strand="+" ref_id="SGN-U328234" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>780</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0113I06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U328234" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15956" e_stop="16735"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTTTTCTGTTCAATCTCAAACAGGTAATCATAATTCAGTTTACATGAAATACCGATGACACTAGTTTTTAGTTTCCTAAAAGATGCAGAATATTTATTTGAATCTCAAGGGAGCATGTCAGTTGGATTTTCTGTTACATGTAGGACCATTTCTCGATTCATATGTTTCTGAAGGGACTGTCATATGTACGGCTGTAAATTGTTTGGTTTAAACCACGAGAAATGACCAAGCCAAAAATCTTGGTCTGTTTGGTACTGCTTTCTTGTGTTTTTTTAAATAAAAATTATGTTTGGTTTCTGTTTGTTTTGATTCTCTCTGCAGGGGTTTCTGTTTTCCAACGCGGTTTCCTTTTTCTTTCCTTTTTAATTTAGAAAAAGAGAACACTGAAATTAGGGATATGCATAGTTTATCCAGGTATCAGTTTCCTTCACTTCCCCCCTCACTCCATCTCTGTCTCTCACTTCTTCTCCACACTTCAAGGCGAGACTAGAACATGATCAAATGAACACCCTAGAAATGTAGGTGAAACATTGATAATCTAAGATCTAAAAACCGATGTTATTGCGAATCATATACAAAATCTTTTCTTTTTCCAGTCTTAGCAAACATACTACCTCAGAAGGGCTTCAAGAAGCTTTTTCCAAATTTGGTGAGGTGTTACACGCCATAGGCTGTTTATCCCTGGCTATGCATGAAACTTCGAAACAGTGATTTTTTTCATTGAATTGATAGTTGCCATATCAGTCGGCATCTATCAACTAATCATCTATCTCAAAT</genome_strand>
        <mrna_strand>AAAGTTTTCTGTTCAATCTCAAACAGGTAATCATAATTCAGTTTACATGAAATACCGATGACACTAGTTTTTAGTTTCCTAAAAGATGCAGAATATTTATTTGAATCTCAAGGGAGCATGTCAGTTGGATTTTCTGTTACATGTAGGACCATTTCTCGATTCATATGTTTCTGAAGGGACTGTCATATGTACGGCTGTAAATTGTTTGGTTTAAACCACGAGAAATGACCAAGCCAAAAATCTTGGTCTGTTTGGTACTGCTTTCTTGTGTTTTTTTAAATAAAAATTATGTTTGGTTTCTGTTTGTTTTGATTCTCTCTGCAGGGGTTTCTGTTTTCCAACGCGGTTTCCTTTTTCTTTCCTTTTTAATTTAGAAAAAGAGAACACTGAAATTAGGGATATGCATAGTTTATCCAGGTATCAGTTTCCTTCACTTCCCCCCTCACTCCATCTCTGTCTCTCACTTCTTCTCCACACTTCAAGGCGAGACTAGAACATGATCAAATGAACACCCTAGAAATGTAGGTGAAACATTGATAATCTAAGATCTAAAAACCGATGTTATTGCGAATCATATACAAAATCTTTTCTTTTTCCAGTCTTAGCAAACATACTACCTCAGAAGGGCTTCAAGAAGCTTTTTCCAAATTTGGTGAAGTGTTACACGCCATANGCTGTTTATCCCTGGCTATGCATGAAACTTCGAAACAGTGATTTTTTTCATTGGATTGATAGTTGCCATATCAGTCGGCATCTATCAACTAATCATCTATCTCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U337208" ref_strand="-" ref_description="SGN-U337208        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | lipin family protein, contains Pfam profile: PF04571 lipin, N-terminal conserved region | chr3:2934622-2939461 REVERSE | Aliases: F11F8.14(evalue: 1e-17, score=87) genbank/nr: unknown(evalue: 9e-16, score=87)">
      <seq>agttaatgacatgttccctcctacatccatggttgagcaggttagtgctcgatgactctcgtttttaatatctcatctttgtttgttctaaagtaagttattagcatagacaatctcatttagagactcgaaagcatctggttagacatgcatagtcattcttttctgtttgcacgcgttatgcaaagaaccaacttttcattcactggttatctttgagcttcaactcttctatacagtctttcaacgggggccatctccatgacattgttctggattttcattgtaaatgcaggaagattataacttatggaactactggaaaatgcccctggcagacgtcgataacttgtagagatttcttcccctcgtaccgatggatccaccttttttgttgatctgagaagtcgaaaagcttagccggtatatgtataaccaactacctgcagtttcttttgtaggagagctgccattcttctttgtttctattattaaggtgtataaaattcagctatgtaggttctcattacattgtactcaaaaaggcataaagttcttgctcatgaataaaatttactttctattctctggaaaaaaaaaaaaaaaaaaaagaaaaaaaaaactcgaggggggccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0113I06.1" temp_strand="+" temp_description="C09HBa0113I06.1  AC217787.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0113I06 upload_account_name:spain (1 - 94375)">
        <position start="18093" stop="58101"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18393" g_stop="18988" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="594" r_length="594" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18989" i_stop="19765" i_length="777">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.72"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19766" g_stop="19808" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="595" r_stop="636" r_length="42" r_score="0.721"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0113I06.1" gen_strand="+" ref_id="SGN-U337208" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0113I06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U337208" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="18393" e_stop="18988"/>
          <exon e_start="19766" e_stop="19808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTAATGACATGTTCCCTCCTACATCCATGGTTGAGCAGGTTAGTGCTCGATGACTCTCGTTTTTAATATCTCATCTTTGTTTGTTCTAAAGTAAGTTATTAGCATAGACAATCTCATTTAGAGACTCGAAAGCATCTGGTTAGACATGCATAGTCATTCTTTTCTGTTTGCACGCGTTATGCAAAGAACCAACTTTTCATTCACTGGTTATCTTTGAGCTTCAACTCTTCTATACAGTCTTTCAACGGGGGCCATCTCCATGACATTGTTCTGGATTTTCATTGTAAATGCAGGAAGATTATAACTTATGGAACTACTGGAAAATGCCCCTGGCAGACGTCGATAACTTGTAGAGATTTCTTCCCCTCGTACCGATGGATCCACCTTTTTTGTTGATCTGAGAAGTCGAAAAGCTTAGCCGGTATATGTATAACCAACTACCTGCAGTTTCTTTTGTAGGAGAGCTGCCATTCTTCTTTGTTTCTATTATTAAGGTGTATAAAATTCAGCTATGTAGGTTCTCATTACATTGTACTCAAAAAGGCATAAAGTTCTTGCTCATGAATAAAATTTTACTTTCTATTTCTCTTGAAAGTTCATTTGCTGGTCTTCTCAAAAGTTCTAAAGTGTATTCTTTTCTAATTACTCATAGTTCATGCTCCTCTAGTTCGTTTGTAATTGAAAAATAGTCATTATCGCAGAGTTTTAGTAGCTTAAAATGCATGTAGGGAGCAGTTATGTCATACACGCGAAAAGATCAATATTGATGCGTTCATTTATTATCTCAATCTATTTCAGTTCACCTCGGTACCTCGATTTCGACTCATGCAATTTAAGAGGGTTTTTTTTTTTTTTTGCAAATAGCCACTATAATAAACTTGATTGTGTTTTATAACTATAATTTGCATATTTGCAGGCTACAACTACAGTATTAGCATGTACATTTATAAAATTCAGTATTTTTTTTGAATTTACGAATTCATACAATTACAAAAATCAAAAATATAAATAAAAGTTACACAAATTATATTGTTTTAGTTTTGAATTATACAAATAAAATTTTCAAATGTGATATTTTTCATATAGGCATAATAAAGAGATCTCTATATTAGTTTTTTTCTAAAAAAAATGAATAAAATAATTAAAACTTAGCAAATTTTTATTTGTATTTTGACTAGTTAGATGTCTTGTTCCTAATTCGCATAAATATAACTCAATTTGCTTTTTATTATTTTTTCATATTATGTTATATTTTAGTATATGTTAATATCTCAATATATACTGTCTCTAAATTCGAACTTTATATACTTGTCTATTGTTCATTATATTTCTTACATGTTTTTTTTCGATCGAGCTCGGAGTTGTTTAGTATAAAAAAAAAAAAAAAGGAAAAAGAAAGGAATAGAGAAGGCGC</genome_strand>
        <mrna_strand>AGTTAATGACATGTTCCCTCCTACATCCATGGTTGAGCAGGTTAGTGCTCGATGACTCTCGTTTTTAATATCTCATCTTTGTTTGTTCTAAAGTAAGTTATTAGCATAGACAATCTCATTTAGAGACTCGAAAGCATCTGGTTAGACATGCATAGTCATTCTTTTCTGTTTGCACGCGTTATGCAAAGAACCAACTTTTCATTCACTGGTTATCTTTGAGCTTCAACTCTTCTATACAGTCTTTCAACGGGGGCCATCTCCATGACATTGTTCTGGATTTTCATTGTAAATGCAGGAAGATTATAACTTATGGAACTACTGGAAAATGCCCCTGGCAGACGTCGATAACTTGTAGAGATTTCTTCCCCTCGTACCGATGGATCCACCTTTTTTGTTGATCTGAGAAGTCGAAAAGCTTAGCCGGTATATGTATAACCAACTACCTGCAGTTTCTTTTGTAGGAGAGCTGCCATTCTTCTTTGTTTCTATTATTAAGGTGTATAAAATTCAGCTATGTAGGTTCTCATTACATTGTACTCAAAAAGGCATAAAGTTCTTGCTCATGAATAAAA-TTTACTTTCTA-TTCTCTGGAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAGAAAAAAAAAACTCGAG-GGGGGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U343890" ref_strand="+" ref_description="SGN-U343890        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr2:16451208-16452344 REVERSE | Aliases: F12L6.3, F12L6_3(evalue: 4e-08, score=55.8) genbank/nr: gi|15225080|ref|NP_181469.1| expressed protein [Arabidopsis thaliana] gi|7485415|pir||T00547 hypothetical protein At2g39370 [imported] - Arabidopsis thaliana gi|3355466|gb|AAC27828.1| unknown protein [Arabidopsis thaliana](evalue: 3e-06, score=55.8)">
      <seq>ttgattcttgcaacataaccccatcacaaatggttcaaaaacttcttcaaacatcaaagattcaatcttttcaacaacaagaagagagattcaacattagtactaacactagcaccccatttgagtcttgcaacatttctccatcagagtcttgtagagtgagttgtgaacttaatccagatgagtatttctttgaatggtccactgaattcagcacttttttcaaagacaatcatccaaagatgaaatcttggtccaaaaagcttaagttagtgaaacaatcattaatcagtcaaaagcttaagtcttcaacttcaaaagcatatctcaatctcaagtctttattcaacaagtctacttgttcactagaacaacaacaacaagaagttcctaaagaatgttcaaataagtacattaaggtatgtaaaagaaccccttttggtcatattggaaaatgtacacattcaccaacattagcaagtatgataagagataatgaaggagaaggggttcatgaagacaatgttaatagtaatcatagaaggtcattttcagcagcaatcaagaaacattcaccaacaaaatgtttatcatcttcatcatctaatggttcaacttcatcatcatcatcatcatcatctttttcattgaattctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0113I06.1" temp_strand="+" temp_description="C09HBa0113I06.1  AC217787.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0113I06 upload_account_name:spain (1 - 94375)">
        <position start="35301" stop="36559"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35601" g_stop="36259" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="659" r_length="659" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0113I06.1" gen_strand="+" ref_id="SGN-U343890" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0113I06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U343890" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35601" e_stop="36259"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATTCTTGCAACATAACCCCATCACAAATGGTTCAAAAACTTCTTCAAACATCAAAGATTCAATCTTTTCAACAACAAGAAGAGAGATTCAACATTAGTACTAACACTAGCACCCCATTTGAGTCTTGCAACATTTCTCCATCAGAGTCTTGTAGAGTGAGTTGTGAACTTAATCCAGATGAGTATTTCTTTGAATGGTCCACTGAATTCAGCACTTTTTTCAAAGACAATCATCCAAAGATGAAATCTTGGTCCAAAAAGCTTAAGTTAGTGAAACAATCATTAATCAGTCAAAAGCTTAAGTCTTCAACTTCAAAAGCATATCTCAATCTCAAGTCTTTATTCAACAAGTCTACTTGTTCACTAGAACAACAACAACAAGAAGTTCCTAAAGAATGTTCAAATAAGTACATTAAGGTATGTAAAAGAACCCCTTTTGGTCATATTGGAAAATGTACACATTCACCAACATTAGCAAGTATGATAAGAGATAATGAAGGAGAAGGGGTTCATGAAGACAATGTTAATAGTAATCATAGAAGGTCATTTTCAGCAGCAATCAAGAAACATTCACCAACAAAATGTTTATCATCTTCATCATCTAATGGTTCAACTTCATCATCATCATCATCATCATCTTTTTCATTGAATTCTAAT</genome_strand>
        <mrna_strand>TTGATTCTTGCAACATAACCCCATCACAAATGGTTCAAAAACTTCTTCAAACATCAAAGATTCAATCTTTTCAACAACAAGAAGAGAGATTCAACATTAGTACTAACACTAGCACCCCATTTGAGTCTTGCAACATTTCTCCATCAGAGTCTTGTAGAGTGAGTTGTGAACTTAATCCAGATGAGTATTTCTTTGAATGGTCCACTGAATTCAGCACTTTTTTCAAAGACAATCATCCAAAGATGAAATCTTGGTCCAAAAAGCTTAAGTTAGTGAAACAATCATTAATCAGTCAAAAGCTTAAGTCTTCAACTTCAAAAGCATATCTCAATCTCAAGTCTTTATTCAACAAGTCTACTTGTTCACTAGAACAACAACAACAAGAAGTTCCTAAAGAATGTTCAAATAAGTACATTAAGGTATGTAAAAGAACCCCTTTTGGTCATATTGGAAAATGTACACATTCACCAACATTAGCAAGTATGATAAGAGATAATGAAGGAGAAGGGGTTCATGAAGACAATGTTAATAGTAATCATAGAAGGTCATTTTCAGCAGCAATCAAGAAACATTCACCAACAAAATGTTTATCATCTTCATCATCTAATGGTTCAACTTCATCATCATCATCATCATCATCTTTTTCATTGAATTCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U344685" ref_strand="+" ref_description="SGN-U344685        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: hypothetical(evalue: 1e-05, score=51.2)">
      <seq>ttttttttttttttgctcactgaactgtatttcactaagtaaaatgttcataattctaaaatcttacacttcaattatcttgctcatatactacacaaaaactagagctcttaagtgcaaagatcaattttttacaacacaagactgtacattggctaagaactangacctagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0113I06.1" temp_strand="+" temp_description="C09HBa0113I06.1  AC217787.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0113I06 upload_account_name:spain (1 - 94375)">
        <position start="18937" stop="44432"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43959" g_stop="44132" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0113I06.1" gen_strand="+" ref_id="SGN-U344685" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>174</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0113I06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U344685" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43959" e_stop="44132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTACTTAGCTTGCTCACTGAACTGTATTTCACTAAGTAAAATGTTCATAATTCTAAAATCTTACACTTCAATTATCTTGCTCATATACTACACAAAAACTAGAGCTCTTAAGTGCAAAGATCAATTTTTTACAACACAAGACTGTACATTGGCTAAGAACTA-GACCTAGAA</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTGCTCACTGAACTGTATTTCACTAAGTAAAATGTTCATAATTCTAAAATCTTACACTTCAATTATCTTGCTCATATACTACACAAAAACTAGAGCTCTTAAGTGCAAAGATCAATTTTTTACAACACAAGACTGTACATTGGCTAAGAACTANGACCTAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U346366" ref_strand="+" ref_description="SGN-U346366        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | ankyrin repeat family protein, contains ankyrin repeat domains, Pfam:PF00023 | chr1:2386272-2387983 REVERSE | Aliases: F24B9.19, F24B9_19(evalue: 3e-55, score=212) genbank/nr: Ankyrin(evalue: 9e-56, score=219)">
      <seq>ttgacgttgctgagaaagcgcgaaattcagagatagcagcgattctaaaggagcatggtgtcctgactgcaaagaacatgaagctagcattaccaacgcgttcagccaaagaactgaaacaaactgttagtgacataaaacacgacgttcacaatcagttagagcacactttccaaacacagaaaagagtgaagaacatagcgaagcgtctgaacaaaatgcacacagaaggtcttaacaacgccataaactccaccacggttgttgctgttcttattgctactgttacttttgctgccatatttaatctaccaggtcaatataccgacaaccctaaggagattcctccgggatactcaataggagaaggaaggattgctcctcaacccccttttgtgattttcttcatattcgactctcttgcactcttcatatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0113I06.1" temp_strand="-" temp_description="C09HBa0113I06.1  AC217787.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0113I06 upload_account_name:spain (1 - 94375)">
        <position start="45244" stop="44208"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44944" g_stop="44508" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="437" r_length="437" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0113I06.1" gen_strand="-" ref_id="SGN-U346366" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0113I06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U346366" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44944" e_stop="44508"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGACGTTGCTGAGAAAGCGCGAAATTCAGAGATAGCAGCGATTCTAAAGGAGCATGGTGTCCTGACTGCAAAGAACATGAAGCTAGCATTACCAACGCGTTCAGCCAAAGAACTGAAACAAACTGTTAGTGACATAAAACACGACGTTCACAATCAGTTAGAGCACACTTTCCAAACACAGAAAAGAGTGAAGAACATAGCGAAGCGTCTGAACAAAATGCACACAGAAGGTCTTAACAACGCCATAAACTCCACCACGGTTGTTGCTGTTCTTATTGCTACTGTTACTTTTGCTGCCATATTTAATCTACCAGGTCAATATACCGACAACCCTAAGGAGATTCCTCCGGGATACTCAATAGGAGAAGGAAGGATTGCTCCTCAACCCCCTTTTGTGATTTTCTTCATATTCGACTCTCTTGCACTCTTCATATCA</genome_strand>
        <mrna_strand>TTGACGTTGCTGAGAAAGCGCGAAATTCAGAGATAGCAGCGATTCTAAAGGAGCATGGTGTCCTGACTGCAAAGAACATGAAGCTAGCATTACCAACGCGTTCAGCCAAAGAACTGAAACAAACTGTTAGTGACATAAAACACGACGTTCACAATCAGTTAGAGCACACTTTCCAAACACAGAAAAGAGTGAAGAACATAGCGAAGCGTCTGAACAAAATGCACACAGAAGGTCTTAACAACGCCATAAACTCCACCACGGTTGTTGCTGTTCTTATTGCTACTGTTACTTTTGCTGCCATATTTAATCTACCAGGTCAATATACCGACAACCCTAAGGAGATTCCTCCGGGATACTCAATAGGAGAAGGAAGGATTGCTCCTCAACCCCCTTTTGTGATTTTCTTCATATTCGACTCTCTTGCACTCTTCATATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U323336" ref_strand="+" ref_description="SGN-U323336        Tomato 200607 #1 [7 ESTs aligned] arabidopsis/peptide: | Symbol: None | ankyrin repeat family protein, contains ankyrin repeat domains, Pfam:PF00023 | chr1:2386272-2387983 REVERSE | Aliases: F24B9.19, F24B9_19(evalue: 1e-87, score=319) genbank/nr: Ankyrin(evalue: 4e-89, score=330)">
      <seq>taagatggattcctctgttgtgcagcaaaatgtttgtgtgaaaaagatgacaaaacaattaacaggaaaaagaggagacacacaaatccattcagttgtaagaagtggaaatcttgaattagttttagagataattacttgttgtaatgaagcagaattgattgaattattgtcaaaacagaaccaatctggtgaaaatgctctttatgttgctgctgaatctggtgatttggttttggttaaggaattaatcaagtattatgatattggtttagctagtattaaggctagaaatggatatgatgcttttcatgttgctgctaaacaaggtgattttgaaatggtgaaggtactattggaggcatttcctcagctgtcagttacatttgatcagtcaaattccacagcattgcacactgcatcagcacaaggtcacattgatgttgtcaatttcctcttggagactaatagcagtttagccaccataccgaagaataatgggaagacggcgcttcattcttcagcaagaaatggtcatgttgcagttgtgaaggcacttctaagcaaagaagaagggattctaaattggagagataagaagggacaaacagctcttcatatggcagtcaaaggccaaagtgttgatgtcgttaacgagcttattctatcggatcctactttggctaccattattgatggaaagggtaatactgctctgcatattgcaacgcgtaaaggccgtgtagagatcgttcaagcagtcgtaaaggacaaacgaatgaagtgggatgccatcaataaatctggtgaaactgctcttgacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0113I06.1" temp_strand="-" temp_description="C09HBa0113I06.1  AC217787.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0113I06 upload_account_name:spain (1 - 94375)">
        <position start="46908" stop="44639"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46608" g_stop="46271" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="338" r_length="338" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46270" i_stop="45677" i_length="594">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.914" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45676" g_stop="45267" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="748" r_length="410" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45266" i_stop="45015" i_length="252">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45014" g_stop="44939" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="749" r_stop="824" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0113I06.1" gen_strand="-" ref_id="SGN-U323336" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>824</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0113I06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U323336" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46608" e_stop="46271"/>
          <exon e_start="45676" e_stop="45267"/>
          <exon e_start="45014" e_stop="44939"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGATGGATTCCTCTGTTGTGCAGCAAAATGTTTGTGTGAAAAAGATGACAAAACAATTAACAGGAAAAAGAGGAGACACACAAATCCATTCAGTTGTAAGAAGTGGAAATCTTGAATTAGTTTTAGAGATAATTACTTGTTGTAATGAAGCAGAATTGATTGAATTATTGTCAAAACAGAACCAATCTGGTGAAAATGCTCTTTATGTTGCTGCTGAATCTGGTGATTTGGTTTTGGTTAAGGAATTAATCAAGTATTATGATATTGGTTTAGCTAGTATTAAGGCTAGAAATGGATATGATGCTTTTCATGTTGCTGCTAAACAAGGTGATTTTGGTAAGTGTTTAGTTTTTTTTTCTTCATATTATTCTTCGCGAATCTTTAACTTGTTTGGAATTGAGGCGTTGTATGTAGCAGTGGTTGTTTTGTTATGGTTTTTCATTATGTATGAATTTTTCATTTATCATAAGTATGTGACCTAACAGTTAATGAAAAAAGAGGAATATAGATTACAAACTTGTTTGGGATTGAGGCGTCGTAGTTCTTGTTTTTTCATTTTTCTGTCGATAAGACTCTGCGTCAGATAGTGGATCAGCAGAATAGTAAAGTGCGCCAGGGGCGAACCAACGCGGGTAACAAAAAATTACACTGTATATATAGGGTAGATATTTCATATTTTTGTGTATATATTAATTTTGAACCAACTCAATCAACGAAGAGAGATAGTCAAGTGGTACTGGACTGTGCAAGCCCTAGTTTGCAGGTTTGATTCCTGTGGATCGGATCGCCTATTGAGGTGCACGCAAGTTGGCTAGGCACCTTCCGTAGGGAAGTCCCCTCAGTGTTAAGCTAGTACTGACATTTGCGCGTGGCTTCTAACATGGGATGCTTTGTGCACTAGGCTAAAAATGTTACGAATTTTCGTTGCAGAAATGGTGAAGGTACTATTGGAGGCATTTCCTCAGCTGTCAGTTACATTTGATCAGTCAAATTCCACAGCATTGCACACTGCATCAGCACAAGGTCACATTGATGTTGTCAATTTCCTCTTGGAGACTAATAGCAGTTTAGCCACCATACCGAAGAATAATGGGAAGACGGCGCTTCATTCTTCAGCAAGAAATGGTCATGTTGCAGTTGTGAAGGCACTTCTAAGCAAAGAAGAAGGGATTCTAAATTGGAGAGATAAGAAGGGACAAACAGCTCTTCATATGGCAGTCAAAGGCCAAAGTGTTGATGTCGTTAACGAGCTTATTCTATCGGATCCTACTTTGGCTACCATTATTGATGGAAAGGGTAATACTGCTCTGCATATTGCAACGCGTAAAGGCCGTGTAGAGGTAAATTCTCATATGTATGCTATACTCGTGTTTCATTTTATATGGTGGTGTTTGATTGACACGGAGTTTAAGAAAGAAAAAATGACTTTTGACGCATAAACTAAACATGTATAGCCTGGCTTTGTTCATTTCTCACTTATGCTTATATAGTTCCATATGTTTCTGTATAGGCTGACTTTCTGTTGTATTTTATTGCGCGATTTTTGATGTTCAAATGAAAACACAGCTAACTATATGAATAATTTTGTGTAGATCGTTCAAGCAGTCGTAAAGGACAAACGAATGAAGTGGGATGCCATCAATAAATCTGGTGAAACTGCTCTTGACG</genome_strand>
        <mrna_strand>TAAGATGGATTCCTCTGTTGTGCAGCAAAATGTTTGTGTGAAAAAGATGACAAAACAATTAACAGGAAAAAGAGGAGACACACAAATCCATTCAGTTGTAAGAAGTGGAAATCTTGAATTAGTTTTAGAGATAATTACTTGTTGTAATGAAGCAGAATTGATTGAATTATTGTCAAAACAGAACCAATCTGGTGAAAATGCTCTTTATGTTGCTGCTGAATCTGGTGATTTGGTTTTGGTTAAGGAATTAATCAAGTATTATGATATTGGTTTAGCTAGTATTAAGGCTAGAAATGGATATGATGCTTTTCATGTTGCTGCTAAACAAGGTGATTTTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTGAAGGTACTATTGGAGGCATTTCCTCAGCTGTCAGTTACATTTGATCAGTCAAATTCCACAGCATTGCACACTGCATCAGCACAAGGTCACATTGATGTTGTCAATTTCCTCTTGGAGACTAATAGCAGTTTAGCCACCATACCGAAGAATAATGGGAAGACGGCGCTTCATTCTTCAGCAAGAAATGGTCATGTTGCAGTTGTGAAGGCACTTCTAAGCAAAGAAGAAGGGATTCTAAATTGGAGAGATAAGAAGGGACAAACAGCTCTTCATATGGCAGTCAAAGGCCAAAGTGTTGATGTCGTTAACGAGCTTATTCTATCGGATCCTACTTTGGCTACCATTATTGATGGAAAGGGTAATACTGCTCTGCATATTGCAACGCGTAAAGGCCGTGTAGAG............................................................................................................................................................................................................................................................ATCGTTCAAGCAGTCGTAAAGGACAAACGAATGAAGTGGGATGCCATCAATAAATCTGGTGAAACTGCTCTTGACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U324351" ref_strand="+" ref_description="SGN-U324351        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: | Symbol: None | pectate lyase family protein, similar to pollen allergen Amb a 1.3 SP:P27761 from (Ambrosia artemisiifolia) | chr3:20449749-20451406 FORWARD | Aliases: T26I12.20(evalue: 1e-136, score=483) genbank/nr: gi|30694193|ref|NP_191074.2| polysaccharide lyase family 1 (pectate lyase) [Arabidopsis thaliana](evalue: 1e-134, score=483)">
      <seq>ggagctagtcacggaaagagtgtcggcaaggtttcagtttcaagaatgatagagagacaagaaagagagtgagagttttaatggaaaaaaaaaaagtttcaatctttttggcgttaaacatcataataatcaatactatgagttactagtgatagtaatagtgtattaaatggggaaccaccatggccgtttctctcacagtaaacatcatcatcatcatcataatcaacaaggtcccccattttttgtacctacacaacaaacccaaaatacccagatgggtatagctttgccttatgctaatgttgattccaatttgcgtggtcttgctggtcaagctgagggttttggtggttcttccattggtggtcgtgatggtcatgtttatcaagttcttaatcttaatgatgatgggccaggatcacttcgagatggatgtcgtaaaaaagaacctttgtggatcgtctttgaagtttcagggactattgagctccgttctcatttgagtgtgtcctctttcaaaactattgacgggcgaggcaaaaaaatcaaactcactgggaaagggttgaggttgaaagaatgtgaacatgttattatctgcaatctagagtttgagggaggtagaggacatgatgttgatggcattcagattaaaccaaaatcgaggcatatttggatagatcgttgtagccttagcgactatgacgatggtttaattgacatcacaaaagagagcacagatattactgtttctaggtgtcacttttcaaagcatgacaaaacaatgcttattggaggagattcttctaattgtggtgacagatgtatgagggtcaccattcaccattgtttttttgacggaactagacagcggcatcctcgtgttaggtttgccaaagtacatttgtacaataactacactaggaactggggaatttatgctgtttgtgctagtgtagaatcacagatatattcacaatgcaatatatatgaagctggacaaaaaaaggtggccttcaaatatctaacagagaaggcagctgataaggaagaagcatgtactggtagcattaaatctgaagatgacttgtttgtttgtggaactcaggctggtttattgtctacttgcagcgaaaataacgtcttcaatccatctgagttctaccaaacctggactgttgaacgtcccagcgatgatctcaaacactaccttcaacattgtacaggatggcagtgtattccgcggccaaattgatcagcctttctccagctgtttaggataacgtacatgaacagagacggtagcttcaacgtgtaaagcatctactactacaacgtcgtttatcatcgatttgttgttgctatcatctcttgtctattgttgtcattatatctatgtattatgttaaacataaactacaatcattgaagtaagaaaaaaatcctaaaaaatctcatacttttagcctctttggtgtgaaccttaaccaatttgtttattcaatgaagttggtggcaagtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0113I06.1" temp_strand="+" temp_description="C09HBa0113I06.1  AC217787.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0113I06 upload_account_name:spain (1 - 94375)">
        <position start="51476" stop="58100"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51775" g_stop="52180" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="407" r_length="407" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52181" i_stop="53804" i_length="1624">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53805" g_stop="54156" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="759" r_length="352" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54157" i_stop="54236" i_length="80">
            <donor d_prob="0.904" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54237" g_stop="54447" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="760" r_stop="970" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54448" i_stop="54582" i_length="135">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54583" g_stop="54651" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="971" r_stop="1039" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54652" i_stop="56409" i_length="1758">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56410" g_stop="56899" g_length="490"/>
          <reference_exon_boundary r_type="cDNA" r_start="1040" r_stop="1529" r_length="490" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1530" polyA_stop="1541"/>
      <MATCH_line gen_id="C09HBa0113I06.1" gen_strand="+" ref_id="SGN-U324351" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1528</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0113I06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U324351" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51775" e_stop="52180"/>
          <exon e_start="53805" e_stop="54156"/>
          <exon e_start="54237" e_stop="54447"/>
          <exon e_start="54583" e_stop="54651"/>
          <exon e_start="56410" e_stop="56899"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGCTAGTCACGGAAAGAGTGTCGGCAAGGTTTCAGTTTCAAGAATGATAGAGAGACAAGAAAGAGAGTGAGAGTTTTAATGG-AAAAAAAAAAGTTTCAATCTTTTTGGCGTTAAACATCATAATAATCAATACTATGAGTTACTAGTGATAGTAATAGTGTATTAAATGGGGAACCACCATGGCCGTTTCTCTCACAGTAAACATCATCATCATCATCATAATCAACAAGGTCCCCCATTTTTTGTACCTACACAACAAACCCAAAATACCCAGATGGGTATAGCTTTGCCTTATGCTAATGTTGATTCCAATTTGCGTGGTCTTGCTGGTCAAGCTGAGGGTTTTGGTGGTTCTTCCATTGGTGGTCGTGATGGTCATGTTTATCAAGTTCTTAATCTTAATGGTTAGTTTGATTCTAATTTTAATTTTAATTTCGTTTCTTCTTTTGGGTATGTGTTGAATTGGTTGTTGTAATGGGTGTGTGTGTTATTTTTATATTTTGGGGTTTAATGGAATAGCGATAGATTTATATAGATGACACGAACTTGTTTGATTTGAGATTGAGGTGTAGTTTGTAAGTTATACTATGCTTTGAGCTATAATGGGATAGCGAGGATTCGTATAGCGGACTCTAACTTGTTTTGGATTGAAGTATAGTTGTTGTTGTAAGTTACACAATGCTTGACCTTAAAATGTAATAGAGAGGACTCATATAGCTGACTCTAACTTGTTTGGATCTGTTGCTGTAAATTACATCTATGTGTGCTATTTTGAGTTGGGAAGGGCAGGATTTTTCTTGTCTTTCGAAAATGCTGCGAAAAGTGTTTGCTTTTGGATTTTGATGTTGTTCGTAAGTAGTTTGGCTGGTTGAGAGAAATCTTTTGAATTGGTTTGACACAGCATGGACTAGCTTTCCTCTTCTTTAAGTTGTTCTACCTTGATAAAAACTTCGTCTGATCGATCAATTATATGTCTAGATTCTAAATTAGTTCTGATTAGCTATTAGAATGCTCTCTTATCACCATTTGTCGTATATTCATGTCCGCTTCAGTAATGCTAAAAGATTTCCTATTAAGGCAAATCAGGTGACTCTGTATCTCACACTTTTACCCGAGAGTTGTTTAATCTGGACTTCTTGTTATCGTCTATATGGACCATTGTCTTTATTGTGTGTTATTCTTAGCTAAATATGCATTGATTTTTGATGAAGTAGCTAAGTTCGCGTTGTACTAGTAGATTCATTCAAGGCAACTTCCCATTTTAGATTTATTCATTCCTTTTTCATCATATTGTCACACTTACAGACCGGTGAATATGCATAAACTCATATAAGGTTTTCTGAGACAACTTTAATTACTTATGCCTTATTATTGGACAACATATCTATCCTTCCTTTTCGTTTGCTCATAAGTTTTCCTATCTGTGGTACTGTCTGAATAGGTTGTACTCTAGATTGGATCAATTGAGTTCGCAAATCTAATGTGCGTACACGCATCTTAATACTCTTATTTCTGATCTTTCGAGAAAAAGATCCATTCTTTTCATAAAAAATAGGAGGTATCACCAATGAAGATTAATGTTTTGATTCATCCCTGGCCTCATTCAAGTATCGCGATCCTTGTACATGTGCAGTCAAAGTCCATTTAATTAATTACTTGTCATTCTATACCATTTGTTTTAAAAAACCAGATAATGGATATGAACGAAATCCTTTGGCTTTCCCTTTGTTAGGATGATGTGTATTAAGATGGAAATTCTTCTCTGCAAAGCCAGCTAACAGCATTATGGCCTGCTTATGAACATGAGCAGGTTCCTCTCTGCTTTTACTCTTGCCTTCCTTATCTTTCATGTTTTCTGTCCCACGTCTTTCCTTGAGCCGAGTGTCAAACAGCCTCTCTACCTCCCAAGGTAGGGGTAAGGTCTGCGTACACTCCCCTCCCCTCCCCAGACCCCACTTATGTGATTATCTTAGATTGTTCTGTGCCTCTCATAATACTATTGGACTTATCTTTCTCATATTATTGTAGATGATGGGCCAGGATCACTTCGAGATGGATGTCGTAAAAAAGAACCTTTGTGGATCGTCTTTGAAGTTTCAGGGACTATTGAGCTCCGTTCTCATTTGAGTGTGTCCTCTTTCAAAACTATTGACGGGCGAGGCCAAAAAATCAAACTCACTGGGAAAGGGTTGAGGTTGAAAGAATGTGAACATGTTATTATCTGCAATCTAGAGTTTGAGGGAGGTAGAGGACATGATGTTGATGGCATTCAGATTAAACCAAAATCGAGGCATATTTGGATAGATCGTTGTAGCCTTAGCGACTATGACGATGGTTTAATTGACATCACAAAAGAGAGCACAGATATTACTGTTTCTAGGTCAGCTGAATCAGCATTATCAGATATCTTTGTTATGACATCTATATTTTTCTTATCTTGAATGTTGTATTTGCAACCAGGTGTCACTTTTCAAAGCATGACAAAACAATGCTTATTGGAGGAGATTCTTCTAATTGTGGTGACAGATGTATGAGGGTCACCATTCACCATTGTTTTTTTGACGGAACTAGACAGCGGCATCCTCGTGTTAGGTTTGCCAAAGTACATTTGTACAATAACTACACTAGGAACTGGGGAATTTATGCTGTTTGTGCTAGTGTAGAATCACAGGTAGTACTGCTTTTTAGCAACATCTTCCTCTCTTTCTCCCTCGTCTTTTTGAAGGGAAGGGATATAGCGTTGTGTAAATTCAGTAATATTTGTCCATTCTGCTATTATTGATGACTTAATTATCTCTCGTGTCAGATATATTCACAATGCAATATATATGAAGCTGGACAAAAAAAGGTGGCCTTCAAATATCTAACAGAGAAGGTAAATCTACTAACTAATACTTAGGAGTATTTATTTTGCTTCCAAAACTATGTGATGATCATCTATGTTTTTCTTTAATGCAAAAATTTACCAATTCGTTCTCTTAACAGCAACTTGAATTGCACAGCAAATTTGAGCAGCCTTAACCTTTAAATCCAAAACTGCAAATGTAATTGTCAATATCTATAATTATTTGTGCTTCACGTAAACTGTGCCTGTATAGAGTCACAAAGTATAGCCCGTGGTGTCAATCCTTGTTGTTTGAGTGTTATGGTAAGAAAGTGGGTTAACTTAACTATTCCGTCTGTTCGTGATTATGATAAAAAAACAGAGATTTTGACGTTGAGATTGAGGTTTCGTAGGTAAAGCTTATTTGTCATTCAACAGAAGGTAGCATGTGTGCGCTTCTCCGGGAATGAATTGTAATGATGAAGCGTCTTTGGTTCCAATGAGTCTTTGGGATGGCACAACTTTTTGAGATTTTCCTGCTCTTTCTGGCAATTGGAAACACCCCCATTTATGCTACCCATTTTAGAGGTGCTTGATGTGCCTGGTCAGTTTTCCCCTTAGACTTAGAGCGAAGAAGAGAGGGGCTTTGTATAGACACTATTGAGCCATGTTCGTACCCTAGGCTTACCTTTATTTCATTTATAGAGGAAGCATTCATAGGGATAAATAGGTACCCTGTGGAATTAGTCGAGGTGCCCGCAAGCTGACTTGGACACCTTTTTCTTTAGTTATATTTATATTAGTTTTTGGACTAGCTCAGAATAATCTTGTCCGGGACAATTGTCCCTCTTTCTTCTCCTTCATCACTGCTTCTTTTCTAGTGGACTTCTATGCTTATGGACTATGGTTGGTCATCAAATTTGGAGAAAAAGAACTTGATGTAAGTTGAGAAAATCCAACGTCGAGCTCATTCCATACCCATTTTATTATCATATTTAACAATTGAACCAACAGCCTAATTGAAGGATCAATTGCATGTCCTTTGTATAACAATTTTTTTGCTGGCTTTTCCATTTGAAAGAATTAGTGATCATGCTGATAATGTAAAGTAATCTCTATTTGAGCTGAAAACTTCCTGTTCCATATCAATCTTCCTTTAAATTTCTTTCGTAGTTCCGTATATGCATTTAGTTATACGTGTGTTTTTCTTCGTTTCAATGCCTCCCTCCAAAATGTCAAAGTGGGACAGTTAGAGAAAGAGGCATTTCATTCTCCCCTTTTTCCATATATGGCACATGGCTTTGTGGTGGTTATCCAGTCTCTATCAGCCAGTTGTATAGAACACCCTTTCGGCCCTTATTAGGGGCCTAGATGCTTCATATTTGTATCAAAATTATTAATGGAAGTGGAAGTCATGTAAGGAAAGCTCACGGAACTTTTAAGGCGTCTTTTTTTTGATAACCATGGTGTCCAAGCCAACTTGAACACACCTTGACTAAATCCACGGGATGTCTGTCACCTTTATCCACCAAGACTAGGAACCTATGAGGATAAATCATGTAGTGTTTTTTCTTTTTGTCTTTGCTTGGATTTAAACCGAAGAACTCATGGTTCTCATGCACTTCGTTGACCACTATGCCACACCTGTGGGTGCACTTTTAAAGCGTCTTTGTCGCATATATTCTAAACAACAACTTATTGATGTTTGAAATTTTCTTTGCTTATGTACCATCAACTCTTAAATTGCTAACCTTTAATGATCTCTTAGTCTCTTTCACTACCTAACTGGCTCTTTATGTCATCCTACAGGCAGCTGATAAGGAAGAAGCATGTACTGGTAGCATTAAATCTGAAGATGACTTGTTTGTTTGTGGAACTCAGGCTGGTTTATTGTCTACTTGCAGCGAAAATAACGTCTTCAATCCATCTGAGTTCTACCAAACCTGGACTGTTGAACGTCCCAGCGATGATCTCAAACACTACCTTCAACATTGTACAGGATGGCAGTGTATTCCGCGGCCAAATTGATCAGCCTTTCTCCAGCTGTTTAGGATAACGTACATGAACAGAGACGGTAGCTTCAACGTGTAAAGCATCTACTACTACAACGTCGTTTATCATCGATTTGTTGTTGCTATCATCTCTTGTCTATTGTTGTCATTATATCTATGTATTATGTTAAACATAAACTACAATCATTGAAGTAAGAAAAAAATCCTAAAAAATCTCATACTTTTAGCCTCTTTGGTGTGAACCTTAACCAATTTGTTTATTCAATGAAGTTGGTGGCAAGTAAATA</genome_strand>
        <mrna_strand>GGAGCTAGTCACGGAAAGAGTGTCGGCAAGGTTTCAGTTTCAAGAATGATAGAGAGACAAGAAAGAGAGTGAGAGTTTTAATGGAAAAAAAAAAAGTTTCAATCTTTTTGGCGTTAAACATCATAATAATCAATACTATGAGTTACTAGTGATAGTAATAGTGTATTAAATGGGGAACCACCATGGCCGTTTCTCTCACAGTAAACATCATCATCATCATCATAATCAACAAGGTCCCCCATTTTTTGTACCTACACAACAAACCCAAAATACCCAGATGGGTATAGCTTTGCCTTATGCTAATGTTGATTCCAATTTGCGTGGTCTTGCTGGTCAAGCTGAGGGTTTTGGTGGTTCTTCCATTGGTGGTCGTGATGGTCATGTTTATCAAGTTCTTAATCTTAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATGGGCCAGGATCACTTCGAGATGGATGTCGTAAAAAAGAACCTTTGTGGATCGTCTTTGAAGTTTCAGGGACTATTGAGCTCCGTTCTCATTTGAGTGTGTCCTCTTTCAAAACTATTGACGGGCGAGGCAAAAAAATCAAACTCACTGGGAAAGGGTTGAGGTTGAAAGAATGTGAACATGTTATTATCTGCAATCTAGAGTTTGAGGGAGGTAGAGGACATGATGTTGATGGCATTCAGATTAAACCAAAATCGAGGCATATTTGGATAGATCGTTGTAGCCTTAGCGACTATGACGATGGTTTAATTGACATCACAAAAGAGAGCACAGATATTACTGTTTCTAG................................................................................GTGTCACTTTTCAAAGCATGACAAAACAATGCTTATTGGAGGAGATTCTTCTAATTGTGGTGACAGATGTATGAGGGTCACCATTCACCATTGTTTTTTTGACGGAACTAGACAGCGGCATCCTCGTGTTAGGTTTGCCAAAGTACATTTGTACAATAACTACACTAGGAACTGGGGAATTTATGCTGTTTGTGCTAGTGTAGAATCACAG.......................................................................................................................................ATATATTCACAATGCAATATATATGAAGCTGGACAAAAAAAGGTGGCCTTCAAATATCTAACAGAGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCTGATAAGGAAGAAGCATGTACTGGTAGCATTAAATCTGAAGATGACTTGTTTGTTTGTGGAACTCAGGCTGGTTTATTGTCTACTTGCAGCGAAAATAACGTCTTCAATCCATCTGAGTTCTACCAAACCTGGACTGTTGAACGTCCCAGCGATGATCTCAAACACTACCTTCAACATTGTACAGGATGGCAGTGTATTCCGCGGCCAAATTGATCAGCCTTTCTCCAGCTGTTTAGGATAACGTACATGAACAGAGACGGTAGCTTCAACGTGTAAAGCATCTACTACTACAACGTCGTTTATCATCGATTTGTTGTTGCTATCATCTCTTGTCTATTGTTGTCATTATATCTATGTATTATGTTAAACATAAACTACAATCATTGAAGTAAGAAAAAAATCCTAAAAAATCTCATACTTTTAGCCTCTTTGGTGTGAACCTTAACCAATTTGTTTATTCAATGAAGTTGGTGGCAAGTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326339" ref_strand="+" ref_description="SGN-U326339        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | exocyst subunit EXO70 family protein, contains Pfam domain PF03081: Exo70 exocyst complex subunit; | chr3:2923749-2925635 FORWARD | Aliases: F11F8.10(evalue: 3e-96, score=348) genbank/nr: gi|68449764|gb|AAY97869.1| ACI49 [Lycopersicon esculentum] (evalue: 1e-107, score=392)">
      <seq>tcaaaagatggagctatgattctgtttagctttccagaaattgtggcgaaaaacagtaagaagtcgccagaaaaagtgttccgtatgcttgatatgtacaattcaatcgtcgaacactggacggagattgaaactacattcgaatctgctatccgatctcaagcgatgacgtctctcgttaagcttggtgagtttataaggatggctttggctgaatttgaaaccgctcttcaaaaggaatcgtctaagacgacagttgccggcggtggaatccatgctctcactattgacacaatgaattacatcattctacttgccgactacagctacgtactctctgacatccttgatgagtctcctcctccggctaaaagttcattgcctgaatcatatttcggtatggctgattccgatgagtctccggcaccggcaatctcactccgatttgcttggttgattctcattcttctctgcaaactcgacggcaaagcaaagcactacaaggacgtttcactcgcgtacctcttcttagcaaacaatctccgatacatcgtcgtaaaagtccgttcatcgaatctcaagtacttgctaggtgaaaattggatatcaaaacaagagcaaaaaatcaaaaagtttgcctccaattatgaacaactaggatggagccacgtaatccaatctctaccgcgagaaccaaacgcctcaatgactccacaacaagtgaaagaaatattcaagagattcaattcatcattcgagcaagttcatcggaagcaatctctctacgtcgtaccaaatagtaagctccgagatgatttgaaagtgtcgattgcaaggaaaatacttccggtgtatagagagttttacaatatacataaaaatacgatagcaaaagagagatattcgagtcatgtgatcaaatattctccggaagatttagcacattatttgtccgatttattttttggaccgattgaattgggaagttcatcgtcaggggagtcatccccatcacgtacaataccatcacaactgcagtgaaatttttttttagaggaattgtttatttttcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0113I06.1" temp_strand="-" temp_description="C09HBa0113I06.1  AC217787.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0113I06 upload_account_name:spain (1 - 94375)">
        <position start="75548" stop="73874"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75248" g_stop="74174" g_length="1075"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1075" r_length="1075" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0113I06.1" gen_strand="-" ref_id="SGN-U326339" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>1075</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0113I06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U326339" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75248" e_stop="74174"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAAGATGGAGCTATGATTCTGTTTAGCTTTCCAGAAATTGTGGCGAAAAACAGTAAGAAGTCGCCAGAAAAAGTGTTCCGTATTCTTGATATGTACAATTCAATCGTCGAACACTGGACGGAGATTGAAACTACATTCGAATCTGCTATCCGATCTCAAGCGATGACGTCTCTCGTTAAGCTTGGTGAGTTTATAAGGATGGCTTTGGCTGAATTTGAAACCGCTCTTCAAAAGGAATCGTCTAAGACGACAGTTGCCGGCGGTGGAATCCATGCTCTCACTATTGACACAATGAATTACATCATTCTACTTGCCGACTACAGCTACGTACTCTCTGACATCCTTGATGAGTCTCCTCCTCCGGCTAAAAGTTCATTGCCTGAATCATATTTCGGTATGGCTGATTCCGATGAGTCTCCGGCACCGGCAATCTCACTCCGATTTGCTTGGTTGATTCTCATTCTTCTCTGCAAACTCGACGGCAAAGCAAAGCACTACAAGGACGTTTCACTCGCGTACCTCTTCTTAGCAAACAATCTCCGATACATCGTCGTAAAAGTCCGTTCATCGAATCTCAAGTACTTGCTAGGTGAAAATTGGATATCAAAACAAGAGCAAAAAATCAAAAAGTTTGCCTCCAATTATGAACAACTAGGATGGAGCCACGTAATCCAATCTCTACCGCGAGAACCAAACGCCTCAATGACTCCACAACAAGTGAAAGAAATATTCAAGAGATTCAATTCATCATTCGAGCAAGTTCATCGGAAGCAATCTCTCTACGTCGTACCAAATAGTAAGCTCCGAGATGATTTGAAAGTGTCGATTGCAAGGAAAATACTTCCGGTGTATAGAGAGTTTTACAATATACATAAAAATACGATAGCAAAAGAGAGATATTCGAGTCATGTGATCAAATATTCTCCGGAAGATTTAGCACATTATTTGTCCGATTTATTTTTTGGACCGATTGAATTGGGAAGTTCATCGTCAGTTGAGTCATCCCCATCACGTACAATACCATCACAACTGCAGTGAAATTTTTTTTTAGAGTAATTGTTTATTTTTCTTT</genome_strand>
        <mrna_strand>TCAAAAGATGGAGCTATGATTCTGTTTAGCTTTCCAGAAATTGTGGCGAAAAACAGTAAGAAGTCGCCAGAAAAAGTGTTCCGTATGCTTGATATGTACAATTCAATCGTCGAACACTGGACGGAGATTGAAACTACATTCGAATCTGCTATCCGATCTCAAGCGATGACGTCTCTCGTTAAGCTTGGTGAGTTTATAAGGATGGCTTTGGCTGAATTTGAAACCGCTCTTCAAAAGGAATCGTCTAAGACGACAGTTGCCGGCGGTGGAATCCATGCTCTCACTATTGACACAATGAATTACATCATTCTACTTGCCGACTACAGCTACGTACTCTCTGACATCCTTGATGAGTCTCCTCCTCCGGCTAAAAGTTCATTGCCTGAATCATATTTCGGTATGGCTGATTCCGATGAGTCTCCGGCACCGGCAATCTCACTCCGATTTGCTTGGTTGATTCTCATTCTTCTCTGCAAACTCGACGGCAAAGCAAAGCACTACAAGGACGTTTCACTCGCGTACCTCTTCTTAGCAAACAATCTCCGATACATCGTCGTAAAAGTCCGTTCATCGAATCTCAAGTACTTGCTAGGTGAAAATTGGATATCAAAACAAGAGCAAAAAATCAAAAAGTTTGCCTCCAATTATGAACAACTAGGATGGAGCCACGTAATCCAATCTCTACCGCGAGAACCAAACGCCTCAATGACTCCACAACAAGTGAAAGAAATATTCAAGAGATTCAATTCATCATTCGAGCAAGTTCATCGGAAGCAATCTCTCTACGTCGTACCAAATAGTAAGCTCCGAGATGATTTGAAAGTGTCGATTGCAAGGAAAATACTTCCGGTGTATAGAGAGTTTTACAATATACATAAAAATACGATAGCAAAAGAGAGATATTCGAGTCATGTGATCAAATATTCTCCGGAAGATTTAGCACATTATTTGTCCGATTTATTTTTTGGACCGATTGAATTGGGAAGTTCATCGTCAGGGGAGTCATCCCCATCACGTACAATACCATCACAACTGCAGTGAAATTTTTTTTTAGAGGAATTGTTTATTTTTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U328495" ref_strand="+" ref_description="SGN-U328495        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | exocyst subunit EXO70 family protein, contains Pfam domain PF03081: Exo70 exocyst complex subunit; tomato leucine zipper-containing protein, Lycopersicon esculentum, PIR:S21495 | chr3:20451527-20453581 REVERSE | Aliases: T26I12.30(evalue: 3e-33, score=138) genbank/nr: gi|22331801|ref|NP_191075.2| exocyst subunit EXO70 family [Arabidopsis thaliana] gi|18377618|gb|AAL66959.1| unknown protein [Arabidopsis thaliana] gi|20465379|gb|AAM20093.1| unknown protein [Arabidopsis thaliana](evalue: 2e-31, score=138)">
      <seq>tcattttactctactcttcatttatacatccaaaaactatataccaaatttttttgattatttcgctatcgcaataacaaaatccactcaattatttctcaaaacataacacgaaaatcatgccgagaaaaggaatgagaacactgaattggttttcaccaaaacacaattcagcaactgatgttaattctccatctacttcacaattctcatctccttcccgattcgccttttcgccatccagaccgagtttttctgaagcagtgattgatcgaacgatcgagatggctgagcagatgatcacgaaatgggatcctgatactaccaccttcgcgaaggtgacttctctgttctatgaaaatcgaaaagaagctaaggatttcattaaatatgtgaataatctacataaggctatgcattttcatgctagtgagaattccagatctgataagcttgttcgtgctcaatcgttgatgcaaatcgcgatgaaacgactgcagaaggagttttatcagattttatcaatcaacagagcacttttggatcctgaatctatatccactgtgtcttcacgtacttcgataagtactcgatcgagtacctctgaatttaacgttgaagatgatgatgataatcgtgttgcaattgctggtgaatctattaatgaagttgaggatatttctaatggtgtaatggcggatttgagattgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0113I06.1" temp_strand="-" temp_description="C09HBa0113I06.1  AC217787.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0113I06 upload_account_name:spain (1 - 94375)">
        <position start="76543" stop="75232"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76243" g_stop="75532" g_length="712"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0113I06.1" gen_strand="-" ref_id="SGN-U328495" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0113I06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U328495" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76243" e_stop="75532"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTTTACTCTACTCTTCATTTATACATCCAAAAACTATATACCAAATTTTTTTGATTATTTCGCTATCGCAATAACAAAATCCACTCAATTATTTCTCAAAACATAACACGAAAATCATGCCGAGAAAAGGAATGAGAACACTGAATTGGTTTTCACCAAAACACAATTCAGCAACTGATGTTAATTCTCCATCTACTTCACAATTCTCATCTCCTTCCCGATTCGCCTTTTCGCCATCCAGACCGAGTTTTTCTGAAGCAGTGATTGATCGAACGATCGAGATGGCTGAGCAGATGATCACGAAATGGGATCCTGATACTACCACCTTCGCGAAGGTGACTTCTCTGTTCTATGAAAATCGAAAAGAAGCTAAGGATTTCATTAAATATGTGAATAATCTACATAAGGCTATGCATTTTCATGCTAGTGAGAATTCCAGATCTGATAAGCTTGTTCGTGCTCAATCGTTGATGCAAATCGCGATGAAACGACTGCAGAAGGAGTTTTATCAGATTTTATCAATCAACAGAGCACTTTTGGATCCTGAATCTATATCCACTGTGTCTTCACGTACTTCGATAAGTACTCGATCGAGTACCTCTGAATTTAACGTTGAAGATGATGATGATAATCGTGTTGCAATTGCTGGTGAATCTATTAATGAAGTTGAGGATATTTCTAATGTTGTAATGGCGGATTTGAGATTGAT</genome_strand>
        <mrna_strand>TCATTTTACTCTACTCTTCATTTATACATCCAAAAACTATATACCAAATTTTTTTGATTATTTCGCTATCGCAATAACAAAATCCACTCAATTATTTCTCAAAACATAACACGAAAATCATGCCGAGAAAAGGAATGAGAACACTGAATTGGTTTTCACCAAAACACAATTCAGCAACTGATGTTAATTCTCCATCTACTTCACAATTCTCATCTCCTTCCCGATTCGCCTTTTCGCCATCCAGACCGAGTTTTTCTGAAGCAGTGATTGATCGAACGATCGAGATGGCTGAGCAGATGATCACGAAATGGGATCCTGATACTACCACCTTCGCGAAGGTGACTTCTCTGTTCTATGAAAATCGAAAAGAAGCTAAGGATTTCATTAAATATGTGAATAATCTACATAAGGCTATGCATTTTCATGCTAGTGAGAATTCCAGATCTGATAAGCTTGTTCGTGCTCAATCGTTGATGCAAATCGCGATGAAACGACTGCAGAAGGAGTTTTATCAGATTTTATCAATCAACAGAGCACTTTTGGATCCTGAATCTATATCCACTGTGTCTTCACGTACTTCGATAAGTACTCGATCGAGTACCTCTGAATTTAACGTTGAAGATGATGATGATAATCGTGTTGCAATTGCTGGTGAATCTATTAATGAAGTTGAGGATATTTCTAATGGTGTAATGGCGGATTTGAGATTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U331206" ref_strand="+" ref_description="SGN-U331206        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | NAD-dependent epimerase/dehydratase family protein, similar to UDP-glucuronic acid decarboxylase Uxs1p from Filobasidiella neoformans GI:14318327; contains Pfam profile PF01370 NAD dependent epimerase/dehydratase family | chr3:19852613-19855285 FORWARD | Aliases: F4P12.220(evalue: 3e-17, score=84.3) genbank/nr: UDP-glucuronic(evalue: 1e-17, score=91.7)">
      <seq>ttttttttcatcttcttcaaacaattcttgtcaccttaaaaacactcaaaaatcatacaaattttcagttacaaatcttgaatttttttccacttttaccatttccccattcttgatttgcaaaaaaagctatgaaattgtacaaacagtcaagtagaagagatgaggatttacccaattctcaaccatactcaccaaagaccttgaaatacccaagaggatctcttcccagatccatcaattatctcctcaaagaacaaagacttctgttcattcttgttggtattctaattggttcaacttttttcatcattcaacctagtctatctcatcttagcacatcttctgaaccacattcttcaatacccagatcatataatgctttaaatcatgaatctttatcaaaattagcttcatataatgataaagatgtaagctttagggtgaatggggttactgggagggttccagttggggttgggaggaaaagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0113I06-139un/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0113I06.1" temp_strand="+" temp_description="C09HBa0113I06.1  AC217787.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0113I06 upload_account_name:spain (1 - 94375)">
        <position start="89744" stop="90835"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90044" g_stop="90535" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="492" r_length="492" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0113I06.1" gen_strand="+" ref_id="SGN-U331206" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0113I06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U331206" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90044" e_stop="90535"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTCATCTTCTTCAAACAATTCTTGTCACCTTAAAAACACTCAAAAATCATACAAATTTTCAGTTACAAATCTTGAATTTTTTTCCACTTTTACCATTTCCCCATTCTTGATTTGCAAAAAAAGCTATGAAATTGTACAAACAGTCAAGTAGAAGAGATGAGGATTTACCCAATTCTCAACCATACTCACCAAAGACCTTGAAATACCCAAGAGGATCTCTTCCCAGATCCATCAATTATCTCCTCAAAGAACAAAGACTTCTGTTCATTCTTGTTGGTATTCTAATTGGTTCAACTTTTTTCATCATTCAACCTAGTCTATCTCATCTTAGCACATCTTCTGAACCACATTCTTCAATACCCAGATCATATAATGCTTTAAATCATGAATCTTTATCAAAATTAGCTTCATATAATGATAAAGATGTAAGCTTTAGGGTGAATGGGGTTACTGGGAGGGTTCCAGTTGGGGTTGGGAGGAAAAGGA</genome_strand>
        <mrna_strand>TTTTTTTTCATCTTCTTCAAACAATTCTTGTCACCTTAAAAACACTCAAAAATCATACAAATTTTCAGTTACAAATCTTGAATTTTTTTCCACTTTTACCATTTCCCCATTCTTGATTTGCAAAAAAAGCTATGAAATTGTACAAACAGTCAAGTAGAAGAGATGAGGATTTACCCAATTCTCAACCATACTCACCAAAGACCTTGAAATACCCAAGAGGATCTCTTCCCAGATCCATCAATTATCTCCTCAAAGAACAAAGACTTCTGTTCATTCTTGTTGGTATTCTAATTGGTTCAACTTTTTTCATCATTCAACCTAGTCTATCTCATCTTAGCACATCTTCTGAACCACATTCTTCAATACCCAGATCATATAATGCTTTAAATCATGAATCTTTATCAAAATTAGCTTCATATAATGATAAAGATGTAAGCTTTAGGGTGAATGGGGTTACTGGGAGGGTTCCAGTTGGGGTTGGGAGGAAAAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>12</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="11927" PGL_stop="19808"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11927" e_stop="12632"/>
            <exon e_start="12775" e_stop="13370"/>
            <exon e_start="13447" e_stop="13520"/>
            <exon e_start="14163" e_stop="14247"/>
            <exon e_start="15895" e_stop="15981"/>
            <exon e_start="17514" e_stop="17586"/>
            <exon e_start="17796" e_stop="17839"/>
            <exon e_start="18109" e_stop="18237"/>
            <exon e_start="18334" e_stop="18432"/>
            <exon e_start="18688" e_stop="18975"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.951" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.980" e_score="0.998"/>
          <exon-intron don_prob="0.996" acc_prob="0.794" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.954" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.975" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="11927" e_stop="12632" e_length="706"/>
          </exon>
          <intron i_serial="1" don_prob="0.951" acc_prob="0.980">
            <gDNA_intron_boundary i_start="12633" i_stop="12774" i_length="142"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="12775" e_stop="13370" e_length="596"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.980">
            <gDNA_intron_boundary i_start="13371" i_stop="13446" i_length="76"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="13447" e_stop="13520" e_length="74"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.794">
            <gDNA_intron_boundary i_start="13521" i_stop="14162" i_length="642"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="14163" e_stop="14247" e_length="85"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.997">
            <gDNA_intron_boundary i_start="14248" i_stop="15894" i_length="1647"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="15895" e_stop="15981" e_length="87"/>
          </exon>
          <intron i_serial="5" don_prob="0.974" acc_prob="0.992">
            <gDNA_intron_boundary i_start="15982" i_stop="17513" i_length="1532"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="17514" e_stop="17586" e_length="73"/>
          </exon>
          <intron i_serial="6" don_prob="0.987" acc_prob="0.954">
            <gDNA_intron_boundary i_start="17587" i_stop="17795" i_length="209"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="17796" e_stop="17839" e_length="44"/>
          </exon>
          <intron i_serial="7" don_prob="0.987" acc_prob="0.977">
            <gDNA_intron_boundary i_start="17840" i_stop="18108" i_length="269"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="18109" e_stop="18237" e_length="129"/>
          </exon>
          <intron i_serial="8" don_prob="0.994" acc_prob="0.989">
            <gDNA_intron_boundary i_start="18238" i_stop="18333" i_length="96"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="18334" e_stop="18432" e_length="99"/>
          </exon>
          <intron i_serial="9" don_prob="1.000" acc_prob="0.975">
            <gDNA_intron_boundary i_start="18433" i_stop="18687" i_length="255"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="18688" e_stop="18975" e_length="288"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11927" stop="12595"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U343359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12532" stop="12632"/>
              <exon start="12775" stop="13370"/>
              <exon start="13447" stop="13520"/>
              <exon start="14163" stop="14247"/>
              <exon start="15895" stop="15981"/>
              <exon start="17514" stop="17586"/>
              <exon start="17796" stop="17839"/>
              <exon start="18109" stop="18237"/>
              <exon start="18334" stop="18432"/>
              <exon start="18688" stop="18975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320748" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTCATCTGGGACCTGGTCAGGGGACTGATTTTTGTGATGATAGCTCAGAATTTAATTCGGGTGATAGTACATGGGCTGATGATTATTTCAGCAATCTGAACTCATCCAAAGTTGCATCAGGGGACACTTGCGACGTGAAAAATGAGAGCACTACAGTTGAGCACCAGTTAGAAGTTTCTGAAGTAGATGGGAAACATCTTGATCGAACTCCGGAAGATGACCTGAAGAACCGGGAAGAAGATCTTTCCATGAAGAGTACTGTGGAGAGCACATCATGCAGCATTAAGAGGGATGATGTTTTCAAGAGCTGTCTAGAGCTATCTGCATTAGCCATGCAGGCTGAAGATGAGGTTAATCAGTCAGATACGGTTTCTCAGTCGGATATTCAGGGAGTTGTTGAAGATGTAAAGGAGACGTCTCATAGGAGTCCTTCTGCAATCAGTGCCGAAGATATACATCCTGAGAAATTGGGAAATGAAAATGGCACTCATGATTCTGACAGTGTAACCCTTCAGAAAAGTGACTTGGACGTAGAGCATAATGCTTCAGATAGTGCAAGAGACCATCCTTTTATGAATGATGAACAGTCAAAGGAACATGCTGATTTAACAGTAGCAGCAGAGCAGGCACAAAGTGAACTGCAAGGATTCGATGAAAGCACCGAACGTGATAATGTGGAGCAGCAGACTGCAGCTTTGCTTAAAG : GAGTAGAGATATCTCTTTGTAGGCACTTGCTTCATGCTGGGATGGGTTCCGCTGCTGCTAGAGAAGCCTTTGAGGCAAATCGCGTTTCTGAGGAGGTATTCAGAAACTCCGCAAAATCCATGATAAACAATCCAAATTTAGCTGTCCGAATTCAAGGAAATTATTTACAATGGGACAAAGCTGCACCTATCGTTCTCGGGATGGCTGCATACAATATGGAATTACCTGTTGACTCCACTGACGTCATACCCGTGGAGCAGGACAAGAACCTAAAAACAGGAGAGGATGATAGTGGGTTGCCTTCAACTCCTGGTCGACGATGGAGGCTTTGGCCAATGCCATTTAGAAGAGTTAAGACAATCGAACACACTACCAGTAATCTATCAAATGAAGAGGTGTTTGTTGATTCTGAATCAATCTCACCGAACCAGCCTACAGAACAAACAGCATCACCACAAGGAGGAAAGGAATCTCCTCGCAAGCAACTTGTGAGAACAAATGTCCCTTCTACTGGTCAAATTGAATCTTTAAAACTGAAAGAGGGTCAGAATTTGGTGACTTTCATTTTTTCCACTCGAGTCCTGGGAGACCAAAAG : GTTGAAGCCCATATATATTTGTGGAAGTGGAATACTCGGATTGTAATTTCTGATGTTGATGGGACTATTACCAA : GTCTGATGTTCTTGGTCAGTTCATGCCGTTGGTTGGAAAGGATTGGACCCACTCCGGAATCGCTAGACTTTTCTGTGCAATCAAG : GAAAACGGATATCAGCTACTCTTTCTCAGTGCACGAGCAATTGTTCAAGCTTATCTGACCAAAAGTTTTCTGTTCAATCTCAAACAG : GATGGGAAATCATTACCACCTGGACCTGTTGTTATTTCACCTGATGGTTTATTTCCCTCATTGTACAGAGAAG : TTATAAGAAGAGCTCCTCATGAATTCAAGATTGCATGCTTAGAG : GACATAAAAGCACTTTTTCCACCAGACTATAACCCTTTTTATGCGGGATTCGGGAATAGGGACACTGATGAGCTCAGTTACAGGAAAATTGGAATTCCAAAAGGCAAAATTTTTATAATAAACCCAAAG : GGGGAGGTAGCTATTAACCACCAAATCGACGTGAAATCCTATACTTCATTACACACTCTAGTTAATGACATGTTCCCTCCTACATCCATGGTTGAGCAG : GAAGATTATAACTTATGGAACTACTGGAAAATGCCCCTGGCAGACGTCGATAACTTGTAGAGATTTCTTCCCCTCGTACCGATGGATCCACCTTTTTTGTTGATCTGAGAAGTCGAAAAGCTTAGCCGGTATATGTATAACCAACTACCTGCAGTTTCTTTTGTAGGAGAGCTGCCATTCTTCTTTGTTTCTATTATTAAGGTGTATAAAATTCAGCTATGTAGGTTCTCATTACATTGTACTCAAAAAGGCATAAAGTTCTTGCTCATGAATAAAATTTTACTTTCT</gDNA_template>
            <first_frame> F  H  L  G  P  G  Q  G  T  D  F  C  D  D  S  S  E  F  N  S  G  D  S  T  W  A  D  D  Y  F  S  N  L  N  S  S  K  V  A  S  G  D  T  C  D  V  K  N  E  S  T  T  V  E  H  Q  L  E  V  S  E  V  D  G  K  H  L  D  R  T  P  E  D  D  L  K  N  R  E  E  D  L  S  M  K  S  T  V  E  S  T  S  C  S  I  K  R  D  D  V  F  K  S  C  L  E  L  S  A  L  A  M  Q  A  E  D  E  V  N  Q  S  D  T  V  S  Q  S  D  I  Q  G  V  V  E  D  V  K  E  T  S  H  R  S  P  S  A  I  S  A  E  D  I  H  P  E  K  L  G  N  E  N  G  T  H  D  S  D  S  V  T  L  Q  K  S  D  L  D  V  E  H  N  A  S  D  S  A  R  D  H  P  F  M  N  D  E  Q  S  K  E  H  A  D  L  T  V  A  A  E  Q  A  Q  S  E  L  Q  G  F  D  E  S  T  E  R  D  N  V  E  Q  Q  T  A  A  L  L  K   : G  V  E  I  S  L  C  R  H  L  L  H  A  G  M  G  S  A  A  A  R  E  A  F  E  A  N  R  V  S  E  E  V  F  R  N  S  A  K  S  M  I  N  N  P  N  L  A  V  R  I  Q  G  N  Y  L  Q  W  D  K  A  A  P  I  V  L  G  M  A  A  Y  N  M  E  L  P  V  D  S  T  D  V  I  P  V  E  Q  D  K  N  L  K  T  G  E  D  D  S  G  L  P  S  T  P  G  R  R  W  R  L  W  P  M  P  F  R  R  V  K  T  I  E  H  T  T  S  N  L  S  N  E  E  V  F  V  D  S  E  S  I  S  P  N  Q  P  T  E  Q  T  A  S  P  Q  G  G  K  E  S  P  R  K  Q  L  V  R  T  N  V  P  S  T  G  Q  I  E  S  L  K  L  K  E  G  Q  N  L  V  T  F  I  F  S  T  R  V  L  G  D  Q  K  :  V  E  A  H  I  Y  L  W  K  W  N  T  R  I  V  I  S  D  V  D  G  T  I  T  K :   S  D  V  L  G  Q  F  M  P  L  V  G  K  D  W  T  H  S  G  I  A  R  L  F  C  A  I  K  :  E  N  G  Y  Q  L  L  F  L  S  A  R  A  I  V  Q  A  Y  L  T  K  S  F  L  F  N  L  K  Q  :  D  G  K  S  L  P  P  G  P  V  V  I  S  P  D  G  L  F  P  S  L  Y  R  E   : V  I  R  R  A  P  H  E  F  K  I  A  C  L  E  :  D  I  K  A  L  F  P  P  D  Y  N  P  F  Y  A  G  F  G  N  R  D  T  D  E  L  S  Y  R  K  I  G  I  P  K  G  K  I  F  I  I  N  P  K  :  G  E  V  A  I  N  H  Q  I  D  V  K  S  Y  T  S  L  H  T  L  V  N  D  M  F  P  P  T  S  M  V  E  Q  :  E  D  Y  N  L  W  N  Y  W  K  M  P  L  A  D  V  D  N  L  *  R  F  L  P  L  V  P  M  D  P  P  F  L  L  I  *  E  V  E  K  L  S  R  Y  M  Y  N  Q  L  P  A  V  S  F  V  G  E  L  P  F  F  F  V  S  I  I  K  V  Y  K  I  Q  L  C  R  F  S  L  H  C  T  Q  K  G  I  K  F  L  L  M  N  K  I  L  L  S </first_frame>
            <second_frame>  F  I  W  D  L  V  R  G  L  I  F  V  M  I  A  Q  N  L  I  R  V  I  V  H  G  L  M  I  I  S  A  I  *  T  H  P  K  L  H  Q  G  T  L  A  T  *  K  M  R  A  L  Q  L  S  T  S  *  K  F  L  K  *  M  G  N  I  L  I  E  L  R  K  M  T  *  R  T  G  K  K  I  F  P  *  R  V  L  W  R  A  H  H  A  A  L  R  G  M  M  F  S  R  A  V  *  S  Y  L  H  *  P  C  R  L  K  M  R  L  I  S  Q  I  R  F  L  S  R  I  F  R  E  L  L  K  M  *  R  R  R  L  I  G  V  L  L  Q  S  V  P  K  I  Y  I  L  R  N  W  E  M  K  M  A  L  M  I  L  T  V  *  P  F  R  K  V  T  W  T  *  S  I  M  L  Q  I  V  Q  E  T  I  L  L  *  M  M  N  S  Q  R  N  M  L  I  *  Q  *  Q  Q  S  R  H  K  V  N  C  K  D  S  M  K  A  P  N  V  I  M  W  S  S  R  L  Q  L  C  L  K  :  E  *  R  Y  L  F  V  G  T  C  F  M  L  G  W  V  P  L  L  L  E  K  P  L  R  Q  I  A  F  L  R  R  Y  S  E  T  P  Q  N  P  *  *  T  I  Q  I  *  L  S  E  F  K  E  I  I  Y  N  G  T  K  L  H  L  S  F  S  G  W  L  H  T  I  W  N  Y  L  L  T  P  L  T  S  Y  P  W  S  R  T  R  T  *  K  Q  E  R  M  I  V  G  C  L  Q  L  L  V  D  D  G  G  F  G  Q  C  H  L  E  E  L  R  Q  S  N  T  L  P  V  I  Y  Q  M  K  R  C  L  L  I  L  N  Q  S  H  R  T  S  L  Q  N  K  Q  H  H  H  K  E  E  R  N  L  L  A  S  N  L  *  E  Q  M  S  L  L  L  V  K  L  N  L  *  N  *  K  R  V  R  I  W  *  L  S  F  F  P  L  E  S  W  E  T  K  R :   L  K  P  I  Y  I  C  G  S  G  I  L  G  L  *  F  L  M  L  M  G  L  L  P   : S  L  M  F  L  V  S  S  C  R  W  L  E  R  I  G  P  T  P  E  S  L  D  F  S  V  Q  S  R :   K  T  D  I  S  Y  S  F  S  V  H  E  Q  L  F  K  L  I  *  P  K  V  F  C  S  I  S  N  R :   M  G  N  H  Y  H  L  D  L  L  L  F  H  L  M  V  Y  F  P  H  C  T  E  K  :  L  *  E  E  L  L  M  N  S  R  L  H  A  *  R :   T  *  K  H  F  F  H  Q  T  I  T  L  F  M  R  D  S  G  I  G  T  L  M  S  S  V  T  G  K  L  E  F  Q  K  A  K  F  L  *  *  T  Q  R :   G  R  *  L  L  T  T  K  S  T  *  N  P  I  L  H  Y  T  L  *  L  M  T  C  S  L  L  H  P  W  L  S  R :   K  I  I  T  Y  G  T  T  G  K  C  P  W  Q  T  S  I  T  C  R  D  F  F  P  S  Y  R  W  I  H  L  F  C  *  S  E  K  S  K  S  L  A  G  I  C  I  T  N  Y  L  Q  F  L  L  *  E  S  C  H  S  S  L  F  L  L  L  R  C  I  K  F  S  Y  V  G  S  H  Y  I  V  L  K  K  A  *  S  S  C  S  *  I  K  F  Y  F   </second_frame>
            <third_frame>   S  S  G  T  W  S  G  D  *  F  L  *  *  *  L  R  I  *  F  G  *  *  Y  M  G  *  *  L  F  Q  Q  S  E  L  I  Q  S  C  I  R  G  H  L  R  R  E  K  *  E  H  Y  S  *  A  P  V  R  S  F  *  S  R  W  E  T  S  *  S  N  S  G  R  *  P  E  E  P  G  R  R  S  F  H  E  E  Y  C  G  E  H  I  M  Q  H  *  E  G  *  C  F  Q  E  L  S  R  A  I  C  I  S  H  A  G  *  R  *  G  *  S  V  R  Y  G  F  S  V  G  Y  S  G  S  C  *  R  C  K  G  D  V  S  *  E  S  F  C  N  Q  C  R  R  Y  T  S  *  E  I  G  K  *  K  W  H  S  *  F  *  Q  C  N  P  S  E  K  *  L  G  R  R  A  *  C  F  R  *  C  K  R  P  S  F  Y  E  *  *  T  V  K  G  T  C  *  F  N  S  S  S  R  A  G  T  K  *  T  A  R  I  R  *  K  H  R  T  *  *  C  G  A  A  D  C  S  F  A  *  R :   S  R  D  I  S  L  *  A  L  A  S  C  W  D  G  F  R  C  C  *  R  S  L  *  G  K  S  R  F  *  G  G  I  Q  K  L  R  K  I  H  D  K  Q  S  K  F  S  C  P  N  S  R  K  L  F  T  M  G  Q  S  C  T  Y  R  S  R  D  G  C  I  Q  Y  G  I  T  C  *  L  H  *  R  H  T  R  G  A  G  Q  E  P  K  N  R  R  G  *  *  W  V  A  F  N  S  W  S  T  M  E  A  L  A  N  A  I  *  K  S  *  D  N  R  T  H  Y  Q  *  S  I  K  *  R  G  V  C  *  F  *  I  N  L  T  E  P  A  Y  R  T  N  S  I  T  T  R  R  K  G  I  S  S  Q  A  T  C  E  N  K  C  P  F  Y  W  S  N  *  I  F  K  T  E  R  G  S  E  F  G  D  F  H  F  F  H  S  S  P  G  R  P  K   : G  *  S  P  Y  I  F  V  E  V  E  Y  S  D  C  N  F  *  C  *  W  D  Y  Y  Q  :  V  *  C  S  W  S  V  H  A  V  G  W  K  G  L  D  P  L  R  N  R  *  T  F  L  C  N  Q   : G  K  R  I  S  A  T  L  S  Q  C  T  S  N  C  S  S  L  S  D  Q  K  F  S  V  Q  S  Q  T   : G  W  E  I  I  T  T  W  T  C  C  Y  F  T  *  W  F  I  S  L  I  V  Q  R  S :   Y  K  K  S  S  S  *  I  Q  D  C  M  L  R   : G  H  K  S  T  F  S  T  R  L  *  P  F  L  C  G  I  R  E  *  G  H  *  *  A  Q  L  Q  E  N  W  N  S  K  R  Q  N  F  Y  N  K  P  K   : G  G  G  S  Y  *  P  P  N  R  R  E  I  L  Y  F  I  T  H  S  S  *  *  H  V  P  S  Y  I  H  G  *  A   : G  R  L  *  L  M  E  L  L  E  N  A  P  G  R  R  R  *  L  V  E  I  S  S  P  R  T  D  G  S  T  F  F  V  D  L  R  S  R  K  A  *  P  V  Y  V  *  P  T  T  C  S  F  F  C  R  R  A  A  I  L  L  C  F  Y  Y  *  G  V  *  N  S  A  M  *  V  L  I  T  L  Y  S  K  R  H  K  V  L  A  H  E  *  N  F  T  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0113I06.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11927" stop="12632"/>
                    <exon start="12775" stop="13370"/>
                    <exon start="13447" stop="13520"/>
                    <exon start="14163" stop="14247"/>
                    <exon start="15895" stop="15981"/>
                    <exon start="17514" stop="17586"/>
                    <exon start="17796" stop="17839"/>
                    <exon start="18109" stop="18237"/>
                    <exon start="18334" stop="18432"/>
                    <exon start="18688" stop="18747"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1950</number_coding_nucleotides>
                  <number_encoded_amino_acids>650</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FHLGPGQGTDFCDDSSEFNSGDSTWADDYFSNLNSSKVASGDTCDVKNESTTVEHQLEVSEVDGKHLDRTPEDDLKNREEDLSMKSTVESTSCSIKRDDVFKSCLELSALAMQAEDEVNQSDTVSQSDIQGVVEDVKETSHRSPSAISAEDIHPEKLGNENGTHDSDSVTLQKSDLDVEHNASDSARDHPFMNDEQSKEHADLTVAAEQAQSELQGFDESTERDNVEQQTAALLKGVEISLCRHLLHAGMGSAAAREAFEANRVSEEVFRNSAKSMINNPNLAVRIQGNYLQWDKAAPIVLGMAAYNMELPVDSTDVIPVEQDKNLKTGEDDSGLPSTPGRRWRLWPMPFRRVKTIEHTTSNLSNEEVFVDSESISPNQPTEQTASPQGGKESPRKQLVRTNVPSTGQIESLKLKEGQNLVTFIFSTRVLGDQKVEAHIYLWKWNTRIVISDVDGTITKSDVLGQFMPLVGKDWTHSGIARLFCAIKENGYQLLFLSARAIVQAYLTKSFLFNLKQDGKSLPPGPVVISPDGLFPSLYREVIRRAPHEFKIACLEDIKALFPPDYNPFYAGFGNRDTDELSYRKIGIPKGKIFIINPKGEVAINHQIDVKSYTSLHTLVNDMFPPTSMVEQEDYNLWNYWKMPLADVDNL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="18393" e_stop="18988"/>
            <exon e_start="19766" e_stop="19808"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.995"/>
          <exon-only e_score="0.721"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="18393" e_stop="18988" e_length="596"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="18989" i_stop="19765" i_length="777"/>
          </intron>
          <exon e_serial="2" e_score="0.721">
            <gDNA_exon_boundary e_start="19766" e_stop="19808" e_length="43"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18393" stop="18988"/>
              <exon start="19766" stop="19808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U337208" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGTTAATGACATGTTCCCTCCTACATCCATGGTTGAGCAGGTTAGTGCTCGATGACTCTCGTTTTTAATATCTCATCTTTGTTTGTTCTAAAGTAAGTTATTAGCATAGACAATCTCATTTAGAGACTCGAAAGCATCTGGTTAGACATGCATAGTCATTCTTTTCTGTTTGCACGCGTTATGCAAAGAACCAACTTTTCATTCACTGGTTATCTTTGAGCTTCAACTCTTCTATACAGTCTTTCAACGGGGGCCATCTCCATGACATTGTTCTGGATTTTCATTGTAAATGCAGGAAGATTATAACTTATGGAACTACTGGAAAATGCCCCTGGCAGACGTCGATAACTTGTAGAGATTTCTTCCCCTCGTACCGATGGATCCACCTTTTTTGTTGATCTGAGAAGTCGAAAAGCTTAGCCGGTATATGTATAACCAACTACCTGCAGTTTCTTTTGTAGGAGAGCTGCCATTCTTCTTTGTTTCTATTATTAAGGTGTATAAAATTCAGCTATGTAGGTTCTCATTACATTGTACTCAAAAAGGCATAAAGTTCTTGCTCATGAATAAAATTTTACTTTCTATTTCTCTTGAAA : TAAAAAAAAAAAAAAAGGAAAAAGAAAGGAATAGAGAAGGCGC</gDNA_template>
            <first_frame> S  *  *  H  V  P  S  Y  I  H  G  *  A  G  *  C  S  M  T  L  V  F  N  I  S  S  L  F  V  L  K  *  V  I  S  I  D  N  L  I  *  R  L  E  S  I  W  L  D  M  H  S  H  S  F  L  F  A  R  V  M  Q  R  T  N  F  S  F  T  G  Y  L  *  A  S  T  L  L  Y  S  L  S  T  G  A  I  S  M  T  L  F  W  I  F  I  V  N  A  G  R  L  *  L  M  E  L  L  E  N  A  P  G  R  R  R  *  L  V  E  I  S  S  P  R  T  D  G  S  T  F  F  V  D  L  R  S  R  K  A  *  P  V  Y  V  *  P  T  T  C  S  F  F  C  R  R  A  A  I  L  L  C  F  Y  Y  *  G  V  *  N  S  A  M  *  V  L  I  T  L  Y  S  K  R  H  K  V  L  A  H  E  *  N  F  T  F  Y  F  S  *  N :   K  K  K  K  K  G  K  R  K  E  *  R  R  R </first_frame>
            <second_frame>  V  N  D  M  F  P  P  T  S  M  V  E  Q  V  S  A  R  *  L  S  F  L  I  S  H  L  C  L  F  *  S  K  L  L  A  *  T  I  S  F  R  D  S  K  A  S  G  *  T  C  I  V  I  L  F  C  L  H  A  L  C  K  E  P  T  F  H  S  L  V  I  F  E  L  Q  L  F  Y  T  V  F  Q  R  G  P  S  P  *  H  C  S  G  F  S  L  *  M  Q  E  D  Y  N  L  W  N  Y  W  K  M  P  L  A  D  V  D  N  L  *  R  F  L  P  L  V  P  M  D  P  P  F  L  L  I  *  E  V  E  K  L  S  R  Y  M  Y  N  Q  L  P  A  V  S  F  V  G  E  L  P  F  F  F  V  S  I  I  K  V  Y  K  I  Q  L  C  R  F  S  L  H  C  T  Q  K  G  I  K  F  L  L  M  N  K  I  L  L  S  I  S  L  E   : I  K  K  K  K  K  E  K  E  R  N  R  E  G   </second_frame>
            <third_frame>   L  M  T  C  S  L  L  H  P  W  L  S  R  L  V  L  D  D  S  R  F  *  Y  L  I  F  V  C  S  K  V  S  Y  *  H  R  Q  S  H  L  E  T  R  K  H  L  V  R  H  A  *  S  F  F  S  V  C  T  R  Y  A  K  N  Q  L  F  I  H  W  L  S  L  S  F  N  S  S  I  Q  S  F  N  G  G  H  L  H  D  I  V  L  D  F  H  C  K  C  R  K  I  I  T  Y  G  T  T  G  K  C  P  W  Q  T  S  I  T  C  R  D  F  F  P  S  Y  R  W  I  H  L  F  C  *  S  E  K  S  K  S  L  A  G  I  C  I  T  N  Y  L  Q  F  L  L  *  E  S  C  H  S  S  L  F  L  L  L  R  C  I  K  F  S  Y  V  G  S  H  Y  I  V  L  K  K  A  *  S  S  C  S  *  I  K  F  Y  F  L  F  L  L  K  :  *  K  K  K  K  R  K  K  K  G  I  E  K  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0113I06.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18548" stop="18790"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFSVCTRYAKNQLFIHWLSLSFNSSIQSFNGGHLHDIVLDFHCKCRKIITYGTTGKCPWQTSITCRDFFPSYRWIHLFC*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0113I06.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18796" stop="18988"/>
                    <exon start="19766" stop="19806"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EVEKLSRYMYNQLPAVSFVGELPFFFVSIIKVYKIQLCRFSLHCTQKGIKFLLMNKILLSISLEIKKKKKEKERNREG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="15956" e_stop="16735"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="15956" e_stop="16735" e_length="780"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15956" stop="16735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U328234" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAGTTTTCTGTTCAATCTCAAACAGGTAATCATAATTCAGTTTACATGAAATACCGATGACACTAGTTTTTAGTTTCCTAAAAGATGCAGAATATTTATTTGAATCTCAAGGGAGCATGTCAGTTGGATTTTCTGTTACATGTAGGACCATTTCTCGATTCATATGTTTCTGAAGGGACTGTCATATGTACGGCTGTAAATTGTTTGGTTTAAACCACGAGAAATGACCAAGCCAAAAATCTTGGTCTGTTTGGTACTGCTTTCTTGTGTTTTTTTAAATAAAAATTATGTTTGGTTTCTGTTTGTTTTGATTCTCTCTGCAGGGGTTTCTGTTTTCCAACGCGGTTTCCTTTTTCTTTCCTTTTTAATTTAGAAAAAGAGAACACTGAAATTAGGGATATGCATAGTTTATCCAGGTATCAGTTTCCTTCACTTCCCCCCTCACTCCATCTCTGTCTCTCACTTCTTCTCCACACTTCAAGGCGAGACTAGAACATGATCAAATGAACACCCTAGAAATGTAGGTGAAACATTGATAATCTAAGATCTAAAAACCGATGTTATTGCGAATCATATACAAAATCTTTTCTTTTTCCAGTCTTAGCAAACATACTACCTCAGAAGGGCTTCAAGAAGCTTTTTCCAAATTTGGTGAGGTGTTACACGCCATAGGCTGTTTATCCCTGGCTATGCATGAAACTTCGAAACAGTGATTTTTTTCATTGAATTGATAGTTGCCATATCAGTCGGCATCTATCAACTAATCATCTATCTCAAAT</gDNA_template>
            <first_frame> K  V  F  C  S  I  S  N  R  *  S  *  F  S  L  H  E  I  P  M  T  L  V  F  S  F  L  K  D  A  E  Y  L  F  E  S  Q  G  S  M  S  V  G  F  S  V  T  C  R  T  I  S  R  F  I  C  F  *  R  D  C  H  M  Y  G  C  K  L  F  G  L  N  H  E  K  *  P  S  Q  K  S  W  S  V  W  Y  C  F  L  V  F  F  *  I  K  I  M  F  G  F  C  L  F  *  F  S  L  Q  G  F  L  F  S  N  A  V  S  F  F  F  P  F  *  F  R  K  R  E  H  *  N  *  G  Y  A  *  F  I  Q  V  S  V  S  F  T  S  P  L  T  P  S  L  S  L  T  S  S  P  H  F  K  A  R  L  E  H  D  Q  M  N  T  L  E  M  *  V  K  H  *  *  S  K  I  *  K  P  M  L  L  R  I  I  Y  K  I  F  S  F  S  S  L  S  K  H  T  T  S  E  G  L  Q  E  A  F  S  K  F  G  E  V  L  H  A  I  G  C  L  S  L  A  M  H  E  T  S  K  Q  *  F  F  S  L  N  *  *  L  P  Y  Q  S  A  S  I  N  *  S  S  I  S  N </first_frame>
            <second_frame>  K  F  S  V  Q  S  Q  T  G  N  H  N  S  V  Y  M  K  Y  R  *  H  *  F  L  V  S  *  K  M  Q  N  I  Y  L  N  L  K  G  A  C  Q  L  D  F  L  L  H  V  G  P  F  L  D  S  Y  V  S  E  G  T  V  I  C  T  A  V  N  C  L  V  *  T  T  R  N  D  Q  A  K  N  L  G  L  F  G  T  A  F  L  C  F  F  K  *  K  L  C  L  V  S  V  C  F  D  S  L  C  R  G  F  C  F  P  T  R  F  P  F  S  F  L  F  N  L  E  K  E  N  T  E  I  R  D  M  H  S  L  S  R  Y  Q  F  P  S  L  P  P  S  L  H  L  C  L  S  L  L  L  H  T  S  R  R  D  *  N  M  I  K  *  T  P  *  K  C  R  *  N  I  D  N  L  R  S  K  N  R  C  Y  C  E  S  Y  T  K  S  F  L  F  P  V  L  A  N  I  L  P  Q  K  G  F  K  K  L  F  P  N  L  V  R  C  Y  T  P  *  A  V  Y  P  W  L  C  M  K  L  R  N  S  D  F  F  H  *  I  D  S  C  H  I  S  R  H  L  S  T  N  H  L  S  Q   </second_frame>
            <third_frame>   S  F  L  F  N  L  K  Q  V  I  I  I  Q  F  T  *  N  T  D  D  T  S  F  *  F  P  K  R  C  R  I  F  I  *  I  S  R  E  H  V  S  W  I  F  C  Y  M  *  D  H  F  S  I  H  M  F  L  K  G  L  S  Y  V  R  L  *  I  V  W  F  K  P  R  E  M  T  K  P  K  I  L  V  C  L  V  L  L  S  C  V  F  L  N  K  N  Y  V  W  F  L  F  V  L  I  L  S  A  G  V  S  V  F  Q  R  G  F  L  F  L  S  F  L  I  *  K  K  R  T  L  K  L  G  I  C  I  V  Y  P  G  I  S  F  L  H  F  P  P  H  S  I  S  V  S  H  F  F  S  T  L  Q  G  E  T  R  T  *  S  N  E  H  P  R  N  V  G  E  T  L  I  I  *  D  L  K  T  D  V  I  A  N  H  I  Q  N  L  F  F  F  Q  S  *  Q  T  Y  Y  L  R  R  A  S  R  S  F  F  Q  I  W  *  G  V  T  R  H  R  L  F  I  P  G  Y  A  *  N  F  E  T  V  I  F  F  I  E  L  I  V  A  I  S  V  G  I  Y  Q  L  I  I  Y  L  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0113I06.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16239" stop="16448"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLCLVSVCFDSLCRGFCFPTRFPFSFLFNLEKENTEIRDMHSLSRYQFPSLPPSLHLCLSLLLHTSRRD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="35601" PGL_stop="36259"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35601" e_stop="36259"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="35601" e_stop="36259" e_length="659"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35601" stop="36259"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U343890" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGATTCTTGCAACATAACCCCATCACAAATGGTTCAAAAACTTCTTCAAACATCAAAGATTCAATCTTTTCAACAACAAGAAGAGAGATTCAACATTAGTACTAACACTAGCACCCCATTTGAGTCTTGCAACATTTCTCCATCAGAGTCTTGTAGAGTGAGTTGTGAACTTAATCCAGATGAGTATTTCTTTGAATGGTCCACTGAATTCAGCACTTTTTTCAAAGACAATCATCCAAAGATGAAATCTTGGTCCAAAAAGCTTAAGTTAGTGAAACAATCATTAATCAGTCAAAAGCTTAAGTCTTCAACTTCAAAAGCATATCTCAATCTCAAGTCTTTATTCAACAAGTCTACTTGTTCACTAGAACAACAACAACAAGAAGTTCCTAAAGAATGTTCAAATAAGTACATTAAGGTATGTAAAAGAACCCCTTTTGGTCATATTGGAAAATGTACACATTCACCAACATTAGCAAGTATGATAAGAGATAATGAAGGAGAAGGGGTTCATGAAGACAATGTTAATAGTAATCATAGAAGGTCATTTTCAGCAGCAATCAAGAAACATTCACCAACAAAATGTTTATCATCTTCATCATCTAATGGTTCAACTTCATCATCATCATCATCATCATCTTTTTCATTGAATTCTAAT</gDNA_template>
            <first_frame> L  I  L  A  T  *  P  H  H  K  W  F  K  N  F  F  K  H  Q  R  F  N  L  F  N  N  K  K  R  D  S  T  L  V  L  T  L  A  P  H  L  S  L  A  T  F  L  H  Q  S  L  V  E  *  V  V  N  L  I  Q  M  S  I  S  L  N  G  P  L  N  S  A  L  F  S  K  T  I  I  Q  R  *  N  L  G  P  K  S  L  S  *  *  N  N  H  *  S  V  K  S  L  S  L  Q  L  Q  K  H  I  S  I  S  S  L  Y  S  T  S  L  L  V  H  *  N  N  N  N  K  K  F  L  K  N  V  Q  I  S  T  L  R  Y  V  K  E  P  L  L  V  I  L  E  N  V  H  I  H  Q  H  *  Q  V  *  *  E  I  M  K  E  K  G  F  M  K  T  M  L  I  V  I  I  E  G  H  F  Q  Q  Q  S  R  N  I  H  Q  Q  N  V  Y  H  L  H  H  L  M  V  Q  L  H  H  H  H  H  H  H  L  F  H  *  I  L   </first_frame>
            <second_frame>  *  F  L  Q  H  N  P  I  T  N  G  S  K  T  S  S  N  I  K  D  S  I  F  S  T  T  R  R  E  I  Q  H  *  Y  *  H  *  H  P  I  *  V  L  Q  H  F  S  I  R  V  L  *  S  E  L  *  T  *  S  R  *  V  F  L  *  M  V  H  *  I  Q  H  F  F  Q  R  Q  S  S  K  D  E  I  L  V  Q  K  A  *  V  S  E  T  I  I  N  Q  S  K  A  *  V  F  N  F  K  S  I  S  Q  S  Q  V  F  I  Q  Q  V  Y  L  F  T  R  T  T  T  T  R  S  S  *  R  M  F  K  *  V  H  *  G  M  *  K  N  P  F  W  S  Y  W  K  M  Y  T  F  T  N  I  S  K  Y  D  K  R  *  *  R  R  R  G  S  *  R  Q  C  *  *  *  S  *  K  V  I  F  S  S  N  Q  E  T  F  T  N  K  M  F  I  I  F  I  I  *  W  F  N  F  I  I  I  I  I  I  I  F  F  I  E  F  *  </second_frame>
            <third_frame>   D  S  C  N  I  T  P  S  Q  M  V  Q  K  L  L  Q  T  S  K  I  Q  S  F  Q  Q  Q  E  E  R  F  N  I  S  T  N  T  S  T  P  F  E  S  C  N  I  S  P  S  E  S  C  R  V  S  C  E  L  N  P  D  E  Y  F  F  E  W  S  T  E  F  S  T  F  F  K  D  N  H  P  K  M  K  S  W  S  K  K  L  K  L  V  K  Q  S  L  I  S  Q  K  L  K  S  S  T  S  K  A  Y  L  N  L  K  S  L  F  N  K  S  T  C  S  L  E  Q  Q  Q  Q  E  V  P  K  E  C  S  N  K  Y  I  K  V  C  K  R  T  P  F  G  H  I  G  K  C  T  H  S  P  T  L  A  S  M  I  R  D  N  E  G  E  G  V  H  E  D  N  V  N  S  N  H  R  R  S  F  S  A  A  I  K  K  H  S  P  T  K  C  L  S  S  S  S  S  N  G  S  T  S  S  S  S  S  S  S  S  F  S  L  N  S  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0113I06.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35603" stop="36259"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>657</number_coding_nucleotides>
                  <number_encoded_amino_acids>219</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DSCNITPSQMVQKLLQTSKIQSFQQQEERFNISTNTSTPFESCNISPSESCRVSCELNPDEYFFEWSTEFSTFFKDNHPKMKSWSKKLKLVKQSLISQKLKSSTSKAYLNLKSLFNKSTCSLEQQQQEVPKECSNKYIKVCKRTPFGHIGKCTHSPTLASMIRDNEGEGVHEDNVNSNHRRSFSAAIKKHSPTKCLSSSSSNGSTSSSSSSSSFSLNSN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="43959" PGL_stop="44132"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="43959" e_stop="44132"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.954"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.954">
            <gDNA_exon_boundary e_start="43959" e_stop="44132" e_length="174"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43959" stop="44132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344685" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTTACTTAGCTTGCTCACTGAACTGTATTTCACTAAGTAAAATGTTCATAATTCTAAAATCTTACACTTCAATTATCTTGCTCATATACTACACAAAAACTAGAGCTCTTAAGTGCAAAGATCAATTTTTTACAACACAAGACTGTACATTGGCTAAGAACTAGACCTAGAA</gDNA_template>
            <first_frame> I  L  L  S  L  L  T  E  L  Y  F  T  K  *  N  V  H  N  S  K  I  L  H  F  N  Y  L  A  H  I  L  H  K  N  *  S  S  *  V  Q  R  S  I  F  Y  N  T  R  L  Y  I  G  *  E  L  D  L  E </first_frame>
            <second_frame>  F  Y  L  A  C  S  L  N  C  I  S  L  S  K  M  F  I  I  L  K  S  Y  T  S  I  I  L  L  I  Y  Y  T  K  T  R  A  L  K  C  K  D  Q  F  F  T  T  Q  D  C  T  L  A  K  N  *  T  *   </second_frame>
            <third_frame>   F  T  *  L  A  H  *  T  V  F  H  *  V  K  C  S  *  F  *  N  L  T  L  Q  L  S  C  S  Y  T  T  Q  K  L  E  L  L  S  A  K  I  N  F  L  Q  H  K  T  V  H  W  L  R  T  R  P  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0113I06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="46608" PGL_stop="44508"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="46608" e_stop="46271"/>
            <exon e_start="45676" e_stop="45267"/>
            <exon e_start="45014" e_stop="44508"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.914" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="46608" e_stop="46271" e_length="338"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.914">
            <gDNA_intron_boundary i_start="46270" i_stop="45677" i_length="594"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="45676" e_stop="45267" e_length="410"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="45266" i_stop="45015" i_length="252"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="45014" e_stop="44508" e_length="507"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46608" stop="46271"/>
              <exon start="45676" stop="45267"/>
              <exon start="45014" stop="44939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U323336" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44944" stop="44508"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U346366" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAGATGGATTCCTCTGTTGTGCAGCAAAATGTTTGTGTGAAAAAGATGACAAAACAATTAACAGGAAAAAGAGGAGACACACAAATCCATTCAGTTGTAAGAAGTGGAAATCTTGAATTAGTTTTAGAGATAATTACTTGTTGTAATGAAGCAGAATTGATTGAATTATTGTCAAAACAGAACCAATCTGGTGAAAATGCTCTTTATGTTGCTGCTGAATCTGGTGATTTGGTTTTGGTTAAGGAATTAATCAAGTATTATGATATTGGTTTAGCTAGTATTAAGGCTAGAAATGGATATGATGCTTTTCATGTTGCTGCTAAACAAGGTGATTTTG : AAATGGTGAAGGTACTATTGGAGGCATTTCCTCAGCTGTCAGTTACATTTGATCAGTCAAATTCCACAGCATTGCACACTGCATCAGCACAAGGTCACATTGATGTTGTCAATTTCCTCTTGGAGACTAATAGCAGTTTAGCCACCATACCGAAGAATAATGGGAAGACGGCGCTTCATTCTTCAGCAAGAAATGGTCATGTTGCAGTTGTGAAGGCACTTCTAAGCAAAGAAGAAGGGATTCTAAATTGGAGAGATAAGAAGGGACAAACAGCTCTTCATATGGCAGTCAAAGGCCAAAGTGTTGATGTCGTTAACGAGCTTATTCTATCGGATCCTACTTTGGCTACCATTATTGATGGAAAGGGTAATACTGCTCTGCATATTGCAACGCGTAAAGGCCGTGTAGAG : ATCGTTCAAGCAGTCGTAAAGGACAAACGAATGAAGTGGGATGCCATCAATAAATCTGGTGAAACTGCTCTTGACGTTGCTGAGAAAGCGCGAAATTCAGAGATAGCAGCGATTCTAAAGGAGCATGGTGTCCTGACTGCAAAGAACATGAAGCTAGCATTACCAACGCGTTCAGCCAAAGAACTGAAACAAACTGTTAGTGACATAAAACACGACGTTCACAATCAGTTAGAGCACACTTTCCAAACACAGAAAAGAGTGAAGAACATAGCGAAGCGTCTGAACAAAATGCACACAGAAGGTCTTAACAACGCCATAAACTCCACCACGGTTGTTGCTGTTCTTATTGCTACTGTTACTTTTGCTGCCATATTTAATCTACCAGGTCAATATACCGACAACCCTAAGGAGATTCCTCCGGGATACTCAATAGGAGAAGGAAGGATTGCTCCTCAACCCCCTTTTGTGATTTTCTTCATATTCGACTCTCTTGCACTCTTCATATCA</gDNA_template>
            <first_frame> *  D  G  F  L  C  C  A  A  K  C  L  C  E  K  D  D  K  T  I  N  R  K  K  R  R  H  T  N  P  F  S  C  K  K  W  K  S  *  I  S  F  R  D  N  Y  L  L  *  *  S  R  I  D  *  I  I  V  K  T  E  P  I  W  *  K  C  S  L  C  C  C  *  I  W  *  F  G  F  G  *  G  I  N  Q  V  L  *  Y  W  F  S  *  Y  *  G  *  K  W  I  *  C  F  S  C  C  C  *  T  R  *  F  * :   N  G  E  G  T  I  G  G  I  S  S  A  V  S  Y  I  *  S  V  K  F  H  S  I  A  H  C  I  S  T  R  S  H  *  C  C  Q  F  P  L  G  D  *  *  Q  F  S  H  H  T  E  E  *  W  E  D  G  A  S  F  F  S  K  K  W  S  C  C  S  C  E  G  T  S  K  Q  R  R  R  D  S  K  L  E  R  *  E  G  T  N  S  S  S  Y  G  S  Q  R  P  K  C  *  C  R  *  R  A  Y  S  I  G  S  Y  F  G  Y  H  Y  *  W  K  G  *  Y  C  S  A  Y  C  N  A  *  R  P  C  R   : D  R  S  S  S  R  K  G  Q  T  N  E  V  G  C  H  Q  *  I  W  *  N  C  S  *  R  C  *  E  S  A  K  F  R  D  S  S  D  S  K  G  A  W  C  P  D  C  K  E  H  E  A  S  I  T  N  A  F  S  Q  R  T  E  T  N  C  *  *  H  K  T  R  R  S  Q  S  V  R  A  H  F  P  N  T  E  K  S  E  E  H  S  E  A  S  E  Q  N  A  H  R  R  S  *  Q  R  H  K  L  H  H  G  C  C  C  S  Y  C  Y  C  Y  F  C  C  H  I  *  S  T  R  S  I  Y  R  Q  P  *  G  D  S  S  G  I  L  N  R  R  R  K  D  C  S  S  T  P  F  C  D  F  L  H  I  R  L  S  C  T  L  H  I  </first_frame>
            <second_frame>  K  M  D  S  S  V  V  Q  Q  N  V  C  V  K  K  M  T  K  Q  L  T  G  K  R  G  D  T  Q  I  H  S  V  V  R  S  G  N  L  E  L  V  L  E  I  I  T  C  C  N  E  A  E  L  I  E  L  L  S  K  Q  N  Q  S  G  E  N  A  L  Y  V  A  A  E  S  G  D  L  V  L  V  K  E  L  I  K  Y  Y  D  I  G  L  A  S  I  K  A  R  N  G  Y  D  A  F  H  V  A  A  K  Q  G  D  F   : E  M  V  K  V  L  L  E  A  F  P  Q  L  S  V  T  F  D  Q  S  N  S  T  A  L  H  T  A  S  A  Q  G  H  I  D  V  V  N  F  L  L  E  T  N  S  S  L  A  T  I  P  K  N  N  G  K  T  A  L  H  S  S  A  R  N  G  H  V  A  V  V  K  A  L  L  S  K  E  E  G  I  L  N  W  R  D  K  K  G  Q  T  A  L  H  M  A  V  K  G  Q  S  V  D  V  V  N  E  L  I  L  S  D  P  T  L  A  T  I  I  D  G  K  G  N  T  A  L  H  I  A  T  R  K  G  R  V  E  :  I  V  Q  A  V  V  K  D  K  R  M  K  W  D  A  I  N  K  S  G  E  T  A  L  D  V  A  E  K  A  R  N  S  E  I  A  A  I  L  K  E  H  G  V  L  T  A  K  N  M  K  L  A  L  P  T  R  S  A  K  E  L  K  Q  T  V  S  D  I  K  H  D  V  H  N  Q  L  E  H  T  F  Q  T  Q  K  R  V  K  N  I  A  K  R  L  N  K  M  H  T  E  G  L  N  N  A  I  N  S  T  T  V  V  A  V  L  I  A  T  V  T  F  A  A  I  F  N  L  P  G  Q  Y  T  D  N  P  K  E  I  P  P  G  Y  S  I  G  E  G  R  I  A  P  Q  P  P  F  V  I  F  F  I  F  D  S  L  A  L  F  I  S </second_frame>
            <third_frame>   R  W  I  P  L  L  C  S  K  M  F  V  *  K  R  *  Q  N  N  *  Q  E  K  E  E  T  H  K  S  I  Q  L  *  E  V  E  I  L  N  *  F  *  R  *  L  L  V  V  M  K  Q  N  *  L  N  Y  C  Q  N  R  T  N  L  V  K  M  L  F  M  L  L  L  N  L  V  I  W  F  W  L  R  N  *  S  S  I  M  I  L  V  *  L  V  L  R  L  E  M  D  M  M  L  F  M  L  L  L  N  K  V  I  L  :  K  W  *  R  Y  Y  W  R  H  F  L  S  C  Q  L  H  L  I  S  Q  I  P  Q  H  C  T  L  H  Q  H  K  V  T  L  M  L  S  I  S  S  W  R  L  I  A  V  *  P  P  Y  R  R  I  M  G  R  R  R  F  I  L  Q  Q  E  M  V  M  L  Q  L  *  R  H  F  *  A  K  K  K  G  F  *  I  G  E  I  R  R  D  K  Q  L  F  I  W  Q  S  K  A  K  V  L  M  S  L  T  S  L  F  Y  R  I  L  L  W  L  P  L  L  M  E  R  V  I  L  L  C  I  L  Q  R  V  K  A  V  *  R :   S  F  K  Q  S  *  R  T  N  E  *  S  G  M  P  S  I  N  L  V  K  L  L  L  T  L  L  R  K  R  E  I  Q  R  *  Q  R  F  *  R  S  M  V  S  *  L  Q  R  T  *  S  *  H  Y  Q  R  V  Q  P  K  N  *  N  K  L  L  V  T  *  N  T  T  F  T  I  S  *  S  T  L  S  K  H  R  K  E  *  R  T  *  R  S  V  *  T  K  C  T  Q  K  V  L  T  T  P  *  T  P  P  R  L  L  L  F  L  L  L  L  L  L  L  L  P  Y  L  I  Y  Q  V  N  I  P  T  T  L  R  R  F  L  R  D  T  Q  *  E  K  E  G  L  L  L  N  P  L  L  *  F  S  S  Y  S  T  L  L  H  S  S  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0113I06.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46607" stop="46271"/>
                    <exon start="45676" stop="45267"/>
                    <exon start="45014" stop="44508"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1254</number_coding_nucleotides>
                  <number_encoded_amino_acids>418</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMDSSVVQQNVCVKKMTKQLTGKRGDTQIHSVVRSGNLELVLEIITCCNEAELIELLSKQNQSGENALYVAAESGDLVLVKELIKYYDIGLASIKARNGYDAFHVAAKQGDFEMVKVLLEAFPQLSVTFDQSNSTALHTASAQGHIDVVNFLLETNSSLATIPKNNGKTALHSSARNGHVAVVKALLSKEEGILNWRDKKGQTALHMAVKGQSVDVVNELILSDPTLATIIDGKGNTALHIATRKGRVEIVQAVVKDKRMKWDAINKSGETALDVAEKARNSEIAAILKEHGVLTAKNMKLALPTRSAKELKQTVSDIKHDVHNQLEHTFQTQKRVKNIAKRLNKMHTEGLNNAINSTTVVAVLIATVTFAAIFNLPGQYTDNPKEIPPGYSIGEGRIAPQPPFVIFFIFDSLALFIS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="51775" PGL_stop="56899"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51775" e_stop="52180"/>
            <exon e_start="53805" e_stop="54156"/>
            <exon e_start="54237" e_stop="54447"/>
            <exon e_start="54583" e_stop="54651"/>
            <exon e_start="56410" e_stop="56899"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="0.993"/>
          <exon-intron don_prob="0.904" acc_prob="0.996" e_score="0.997"/>
          <exon-intron don_prob="0.975" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="51775" e_stop="52180" e_length="406"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="52181" i_stop="53804" i_length="1624"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="53805" e_stop="54156" e_length="352"/>
          </exon>
          <intron i_serial="2" don_prob="0.904" acc_prob="0.996">
            <gDNA_intron_boundary i_start="54157" i_stop="54236" i_length="80"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="54237" e_stop="54447" e_length="211"/>
          </exon>
          <intron i_serial="3" don_prob="0.975" acc_prob="0.967">
            <gDNA_intron_boundary i_start="54448" i_stop="54582" i_length="135"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="54583" e_stop="54651" e_length="69"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.995">
            <gDNA_intron_boundary i_start="54652" i_stop="56409" i_length="1758"/>
          </intron>
          <exon e_serial="5" e_score="0.998">
            <gDNA_exon_boundary e_start="56410" e_stop="56899" e_length="490"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51775" stop="52180"/>
              <exon start="53805" stop="54156"/>
              <exon start="54237" stop="54447"/>
              <exon start="54583" stop="54651"/>
              <exon start="56410" stop="56899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U324351" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGAGCTAGTCACGGAAAGAGTGTCGGCAAGGTTTCAGTTTCAAGAATGATAGAGAGACAAGAAAGAGAGTGAGAGTTTTAATGGAAAAAAAAAAGTTTCAATCTTTTTGGCGTTAAACATCATAATAATCAATACTATGAGTTACTAGTGATAGTAATAGTGTATTAAATGGGGAACCACCATGGCCGTTTCTCTCACAGTAAACATCATCATCATCATCATAATCAACAAGGTCCCCCATTTTTTGTACCTACACAACAAACCCAAAATACCCAGATGGGTATAGCTTTGCCTTATGCTAATGTTGATTCCAATTTGCGTGGTCTTGCTGGTCAAGCTGAGGGTTTTGGTGGTTCTTCCATTGGTGGTCGTGATGGTCATGTTTATCAAGTTCTTAATCTTAATG : ATGATGGGCCAGGATCACTTCGAGATGGATGTCGTAAAAAAGAACCTTTGTGGATCGTCTTTGAAGTTTCAGGGACTATTGAGCTCCGTTCTCATTTGAGTGTGTCCTCTTTCAAAACTATTGACGGGCGAGGCCAAAAAATCAAACTCACTGGGAAAGGGTTGAGGTTGAAAGAATGTGAACATGTTATTATCTGCAATCTAGAGTTTGAGGGAGGTAGAGGACATGATGTTGATGGCATTCAGATTAAACCAAAATCGAGGCATATTTGGATAGATCGTTGTAGCCTTAGCGACTATGACGATGGTTTAATTGACATCACAAAAGAGAGCACAGATATTACTGTTTCTAG : GTGTCACTTTTCAAAGCATGACAAAACAATGCTTATTGGAGGAGATTCTTCTAATTGTGGTGACAGATGTATGAGGGTCACCATTCACCATTGTTTTTTTGACGGAACTAGACAGCGGCATCCTCGTGTTAGGTTTGCCAAAGTACATTTGTACAATAACTACACTAGGAACTGGGGAATTTATGCTGTTTGTGCTAGTGTAGAATCACAG : ATATATTCACAATGCAATATATATGAAGCTGGACAAAAAAAGGTGGCCTTCAAATATCTAACAGAGAAG : GCAGCTGATAAGGAAGAAGCATGTACTGGTAGCATTAAATCTGAAGATGACTTGTTTGTTTGTGGAACTCAGGCTGGTTTATTGTCTACTTGCAGCGAAAATAACGTCTTCAATCCATCTGAGTTCTACCAAACCTGGACTGTTGAACGTCCCAGCGATGATCTCAAACACTACCTTCAACATTGTACAGGATGGCAGTGTATTCCGCGGCCAAATTGATCAGCCTTTCTCCAGCTGTTTAGGATAACGTACATGAACAGAGACGGTAGCTTCAACGTGTAAAGCATCTACTACTACAACGTCGTTTATCATCGATTTGTTGTTGCTATCATCTCTTGTCTATTGTTGTCATTATATCTATGTATTATGTTAAACATAAACTACAATCATTGAAGTAAGAAAAAAATCCTAAAAAATCTCATACTTTTAGCCTCTTTGGTGTGAACCTTAACCAATTTGTTTATTCAATGAAGTTGGTGGCAAGTAAATA</gDNA_template>
            <first_frame> R  A  S  H  G  K  S  V  G  K  V  S  V  S  R  M  I  E  R  Q  E  R  E  *  E  F  *  W  K  K  K  S  F  N  L  F  G  V  K  H  H  N  N  Q  Y  Y  E  L  L  V  I  V  I  V  Y  *  M  G  N  H  H  G  R  F  S  H  S  K  H  H  H  H  H  H  N  Q  Q  G  P  P  F  F  V  P  T  Q  Q  T  Q  N  T  Q  M  G  I  A  L  P  Y  A  N  V  D  S  N  L  R  G  L  A  G  Q  A  E  G  F  G  G  S  S  I  G  G  R  D  G  H  V  Y  Q  V  L  N  L  N   : D  D  G  P  G  S  L  R  D  G  C  R  K  K  E  P  L  W  I  V  F  E  V  S  G  T  I  E  L  R  S  H  L  S  V  S  S  F  K  T  I  D  G  R  G  Q  K  I  K  L  T  G  K  G  L  R  L  K  E  C  E  H  V  I  I  C  N  L  E  F  E  G  G  R  G  H  D  V  D  G  I  Q  I  K  P  K  S  R  H  I  W  I  D  R  C  S  L  S  D  Y  D  D  G  L  I  D  I  T  K  E  S  T  D  I  T  V  S  R :   C  H  F  S  K  H  D  K  T  M  L  I  G  G  D  S  S  N  C  G  D  R  C  M  R  V  T  I  H  H  C  F  F  D  G  T  R  Q  R  H  P  R  V  R  F  A  K  V  H  L  Y  N  N  Y  T  R  N  W  G  I  Y  A  V  C  A  S  V  E  S  Q  :  I  Y  S  Q  C  N  I  Y  E  A  G  Q  K  K  V  A  F  K  Y  L  T  E  K  :  A  A  D  K  E  E  A  C  T  G  S  I  K  S  E  D  D  L  F  V  C  G  T  Q  A  G  L  L  S  T  C  S  E  N  N  V  F  N  P  S  E  F  Y  Q  T  W  T  V  E  R  P  S  D  D  L  K  H  Y  L  Q  H  C  T  G  W  Q  C  I  P  R  P  N  *  S  A  F  L  Q  L  F  R  I  T  Y  M  N  R  D  G  S  F  N  V  *  S  I  Y  Y  Y  N  V  V  Y  H  R  F  V  V  A  I  I  S  C  L  L  L  S  L  Y  L  C  I  M  L  N  I  N  Y  N  H  *  S  K  K  K  I  L  K  N  L  I  L  L  A  S  L  V  *  T  L  T  N  L  F  I  Q  *  S  W  W  Q  V  N  </first_frame>
            <second_frame>  E  L  V  T  E  R  V  S  A  R  F  Q  F  Q  E  *  *  R  D  K  K  E  S  E  S  F  N  G  K  K  K  V  S  I  F  L  A  L  N  I  I  I  I  N  T  M  S  Y  *  *  *  *  *  C  I  K  W  G  T  T  M  A  V  S  L  T  V  N  I  I  I  I  I  I  I  N  K  V  P  H  F  L  Y  L  H  N  K  P  K  I  P  R  W  V  *  L  C  L  M  L  M  L  I  P  I  C  V  V  L  L  V  K  L  R  V  L  V  V  L  P  L  V  V  V  M  V  M  F  I  K  F  L  I  L  M  :  M  M  G  Q  D  H  F  E  M  D  V  V  K  K  N  L  C  G  S  S  L  K  F  Q  G  L  L  S  S  V  L  I  *  V  C  P  L  S  K  L  L  T  G  E  A  K  K  S  N  S  L  G  K  G  *  G  *  K  N  V  N  M  L  L  S  A  I  *  S  L  R  E  V  E  D  M  M  L  M  A  F  R  L  N  Q  N  R  G  I  F  G  *  I  V  V  A  L  A  T  M  T  M  V  *  L  T  S  Q  K  R  A  Q  I  L  L  F  L   : G  V  T  F  Q  S  M  T  K  Q  C  L  L  E  E  I  L  L  I  V  V  T  D  V  *  G  S  P  F  T  I  V  F  L  T  E  L  D  S  G  I  L  V  L  G  L  P  K  Y  I  C  T  I  T  T  L  G  T  G  E  F  M  L  F  V  L  V  *  N  H  R :   Y  I  H  N  A  I  Y  M  K  L  D  K  K  R  W  P  S  N  I  *  Q  R  R :   Q  L  I  R  K  K  H  V  L  V  A  L  N  L  K  M  T  C  L  F  V  E  L  R  L  V  Y  C  L  L  A  A  K  I  T  S  S  I  H  L  S  S  T  K  P  G  L  L  N  V  P  A  M  I  S  N  T  T  F  N  I  V  Q  D  G  S  V  F  R  G  Q  I  D  Q  P  F  S  S  C  L  G  *  R  T  *  T  E  T  V  A  S  T  C  K  A  S  T  T  T  T  S  F  I  I  D  L  L  L  L  S  S  L  V  Y  C  C  H  Y  I  Y  V  L  C  *  T  *  T  T  I  I  E  V  R  K  K  S  *  K  I  S  Y  F  *  P  L  W  C  E  P  *  P  I  C  L  F  N  E  V  G  G  K  *  I </second_frame>
            <third_frame>   S  *  S  R  K  E  C  R  Q  G  F  S  F  K  N  D  R  E  T  R  K  R  V  R  V  L  M  E  K  K  K  F  Q  S  F  W  R  *  T  S  *  *  S  I  L  *  V  T  S  D  S  N  S  V  L  N  G  E  P  P  W  P  F  L  S  Q  *  T  S  S  S  S  S  *  S  T  R  S  P  I  F  C  T  Y  T  T  N  P  K  Y  P  D  G  Y  S  F  A  L  C  *  C  *  F  Q  F  A  W  S  C  W  S  S  *  G  F  W  W  F  F  H  W  W  S  *  W  S  C  L  S  S  S  *  S  *  * :   *  W  A  R  I  T  S  R  W  M  S  *  K  R  T  F  V  D  R  L  *  S  F  R  D  Y  *  A  P  F  S  F  E  C  V  L  F  Q  N  Y  *  R  A  R  P  K  N  Q  T  H  W  E  R  V  E  V  E  R  M  *  T  C  Y  Y  L  Q  S  R  V  *  G  R  *  R  T  *  C  *  W  H  S  D  *  T  K  I  E  A  Y  L  D  R  S  L  *  P  *  R  L  *  R  W  F  N  *  H  H  K  R  E  H  R  Y  Y  C  F  *  :  V  S  L  F  K  A  *  Q  N  N  A  Y  W  R  R  F  F  *  L  W  *  Q  M  Y  E  G  H  H  S  P  L  F  F  *  R  N  *  T  A  A  S  S  C  *  V  C  Q  S  T  F  V  Q  *  L  H  *  E  L  G  N  L  C  C  L  C  *  C  R  I  T   : D  I  F  T  M  Q  Y  I  *  S  W  T  K  K  G  G  L  Q  I  S  N  R  E   : G  S  *  *  G  R  S  M  Y  W  *  H  *  I  *  R  *  L  V  C  L  W  N  S  G  W  F  I  V  Y  L  Q  R  K  *  R  L  Q  S  I  *  V  L  P  N  L  D  C  *  T  S  Q  R  *  S  Q  T  L  P  S  T  L  Y  R  M  A  V  Y  S  A  A  K  L  I  S  L  S  P  A  V  *  D  N  V  H  E  Q  R  R  *  L  Q  R  V  K  H  L  L  L  Q  R  R  L  S  S  I  C  C  C  Y  H  L  L  S  I  V  V  I  I  S  M  Y  Y  V  K  H  K  L  Q  S  L  K  *  E  K  N  P  K  K  S  H  T  F  S  L  F  G  V  N  L  N  Q  F  V  Y  S  M  K  L  V  A  S  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0113I06.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51943" stop="52180"/>
                    <exon start="53805" stop="54156"/>
                    <exon start="54237" stop="54447"/>
                    <exon start="54583" stop="54651"/>
                    <exon start="56410" stop="56628"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1086</number_coding_nucleotides>
                  <number_encoded_amino_acids>362</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MGNHHGRFSHSKHHHHHHNQQGPPFFVPTQQTQNTQMGIALPYANVDSNLRGLAGQAEGFGGSSIGGRDGHVYQVLNLNDDGPGSLRDGCRKKEPLWIVFEVSGTIELRSHLSVSSFKTIDGRGQKIKLTGKGLRLKECEHVIICNLEFEGGRGHDVDGIQIKPKSRHIWIDRCSLSDYDDGLIDITKESTDITVSRCHFSKHDKTMLIGGDSSNCGDRCMRVTIHHCFFDGTRQRHPRVRFAKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGQKKVAFKYLTEKAADKEEACTGSIKSEDDLFVCGTQAGLLSTCSENNVFNPSEFYQTWTVERPSDDLKHYLQHCTGWQCIPRPN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="75248" PGL_stop="74174"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75248" e_stop="74174"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="75248" e_stop="74174" e_length="1075"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75248" stop="74174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326339" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAAAAGATGGAGCTATGATTCTGTTTAGCTTTCCAGAAATTGTGGCGAAAAACAGTAAGAAGTCGCCAGAAAAAGTGTTCCGTATTCTTGATATGTACAATTCAATCGTCGAACACTGGACGGAGATTGAAACTACATTCGAATCTGCTATCCGATCTCAAGCGATGACGTCTCTCGTTAAGCTTGGTGAGTTTATAAGGATGGCTTTGGCTGAATTTGAAACCGCTCTTCAAAAGGAATCGTCTAAGACGACAGTTGCCGGCGGTGGAATCCATGCTCTCACTATTGACACAATGAATTACATCATTCTACTTGCCGACTACAGCTACGTACTCTCTGACATCCTTGATGAGTCTCCTCCTCCGGCTAAAAGTTCATTGCCTGAATCATATTTCGGTATGGCTGATTCCGATGAGTCTCCGGCACCGGCAATCTCACTCCGATTTGCTTGGTTGATTCTCATTCTTCTCTGCAAACTCGACGGCAAAGCAAAGCACTACAAGGACGTTTCACTCGCGTACCTCTTCTTAGCAAACAATCTCCGATACATCGTCGTAAAAGTCCGTTCATCGAATCTCAAGTACTTGCTAGGTGAAAATTGGATATCAAAACAAGAGCAAAAAATCAAAAAGTTTGCCTCCAATTATGAACAACTAGGATGGAGCCACGTAATCCAATCTCTACCGCGAGAACCAAACGCCTCAATGACTCCACAACAAGTGAAAGAAATATTCAAGAGATTCAATTCATCATTCGAGCAAGTTCATCGGAAGCAATCTCTCTACGTCGTACCAAATAGTAAGCTCCGAGATGATTTGAAAGTGTCGATTGCAAGGAAAATACTTCCGGTGTATAGAGAGTTTTACAATATACATAAAAATACGATAGCAAAAGAGAGATATTCGAGTCATGTGATCAAATATTCTCCGGAAGATTTAGCACATTATTTGTCCGATTTATTTTTTGGACCGATTGAATTGGGAAGTTCATCGTCAGTTGAGTCATCCCCATCACGTACAATACCATCACAACTGCAGTGAAATTTTTTTTTAGAGTAATTGTTTATTTTTCTTT</gDNA_template>
            <first_frame> S  K  D  G  A  M  I  L  F  S  F  P  E  I  V  A  K  N  S  K  K  S  P  E  K  V  F  R  I  L  D  M  Y  N  S  I  V  E  H  W  T  E  I  E  T  T  F  E  S  A  I  R  S  Q  A  M  T  S  L  V  K  L  G  E  F  I  R  M  A  L  A  E  F  E  T  A  L  Q  K  E  S  S  K  T  T  V  A  G  G  G  I  H  A  L  T  I  D  T  M  N  Y  I  I  L  L  A  D  Y  S  Y  V  L  S  D  I  L  D  E  S  P  P  P  A  K  S  S  L  P  E  S  Y  F  G  M  A  D  S  D  E  S  P  A  P  A  I  S  L  R  F  A  W  L  I  L  I  L  L  C  K  L  D  G  K  A  K  H  Y  K  D  V  S  L  A  Y  L  F  L  A  N  N  L  R  Y  I  V  V  K  V  R  S  S  N  L  K  Y  L  L  G  E  N  W  I  S  K  Q  E  Q  K  I  K  K  F  A  S  N  Y  E  Q  L  G  W  S  H  V  I  Q  S  L  P  R  E  P  N  A  S  M  T  P  Q  Q  V  K  E  I  F  K  R  F  N  S  S  F  E  Q  V  H  R  K  Q  S  L  Y  V  V  P  N  S  K  L  R  D  D  L  K  V  S  I  A  R  K  I  L  P  V  Y  R  E  F  Y  N  I  H  K  N  T  I  A  K  E  R  Y  S  S  H  V  I  K  Y  S  P  E  D  L  A  H  Y  L  S  D  L  F  F  G  P  I  E  L  G  S  S  S  S  V  E  S  S  P  S  R  T  I  P  S  Q  L  Q  *  N  F  F  L  E  *  L  F  I  F  L  </first_frame>
            <second_frame>  Q  K  M  E  L  *  F  C  L  A  F  Q  K  L  W  R  K  T  V  R  S  R  Q  K  K  C  S  V  F  L  I  C  T  I  Q  S  S  N  T  G  R  R  L  K  L  H  S  N  L  L  S  D  L  K  R  *  R  L  S  L  S  L  V  S  L  *  G  W  L  W  L  N  L  K  P  L  F  K  R  N  R  L  R  R  Q  L  P  A  V  E  S  M  L  S  L  L  T  Q  *  I  T  S  F  Y  L  P  T  T  A  T  Y  S  L  T  S  L  M  S  L  L  L  R  L  K  V  H  C  L  N  H  I  S  V  W  L  I  P  M  S  L  R  H  R  Q  S  H  S  D  L  L  G  *  F  S  F  F  S  A  N  S  T  A  K  Q  S  T  T  R  T  F  H  S  R  T  S  S  *  Q  T  I  S  D  T  S  S  *  K  S  V  H  R  I  S  S  T  C  *  V  K  I  G  Y  Q  N  K  S  K  K  S  K  S  L  P  P  I  M  N  N  *  D  G  A  T  *  S  N  L  Y  R  E  N  Q  T  P  Q  *  L  H  N  K  *  K  K  Y  S  R  D  S  I  H  H  S  S  K  F  I  G  S  N  L  S  T  S  Y  Q  I  V  S  S  E  M  I  *  K  C  R  L  Q  G  K  Y  F  R  C  I  E  S  F  T  I  Y  I  K  I  R  *  Q  K  R  D  I  R  V  M  *  S  N  I  L  R  K  I  *  H  I  I  C  P  I  Y  F  L  D  R  L  N  W  E  V  H  R  Q  L  S  H  P  H  H  V  Q  Y  H  H  N  C  S  E  I  F  F  *  S  N  C  L  F  F  F </second_frame>
            <third_frame>   K  R  W  S  Y  D  S  V  *  L  S  R  N  C  G  E  K  Q  *  E  V  A  R  K  S  V  P  Y  S  *  Y  V  Q  F  N  R  R  T  L  D  G  D  *  N  Y  I  R  I  C  Y  P  I  S  S  D  D  V  S  R  *  A  W  *  V  Y  K  D  G  F  G  *  I  *  N  R  S  S  K  G  I  V  *  D  D  S  C  R  R  W  N  P  C  S  H  Y  *  H  N  E  L  H  H  S  T  C  R  L  Q  L  R  T  L  *  H  P  *  *  V  S  S  S  G  *  K  F  I  A  *  I  I  F  R  Y  G  *  F  R  *  V  S  G  T  G  N  L  T  P  I  C  L  V  D  S  H  S  S  L  Q  T  R  R  Q  S  K  A  L  Q  G  R  F  T  R  V  P  L  L  S  K  Q  S  P  I  H  R  R  K  S  P  F  I  E  S  Q  V  L  A  R  *  K  L  D  I  K  T  R  A  K  N  Q  K  V  C  L  Q  L  *  T  T  R  M  E  P  R  N  P  I  S  T  A  R  T  K  R  L  N  D  S  T  T  S  E  R  N  I  Q  E  I  Q  F  I  I  R  A  S  S  S  E  A  I  S  L  R  R  T  K  *  *  A  P  R  *  F  E  S  V  D  C  K  E  N  T  S  G  V  *  R  V  L  Q  Y  T  *  K  Y  D  S  K  R  E  I  F  E  S  C  D  Q  I  F  S  G  R  F  S  T  L  F  V  R  F  I  F  W  T  D  *  I  G  K  F  I  V  S  *  V  I  P  I  T  Y  N  T  I  T  T  A  V  K  F  F  F  R  V  I  V  Y  F  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0113I06.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75248" stop="74208"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1038</number_coding_nucleotides>
                  <number_encoded_amino_acids>346</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKDGAMILFSFPEIVAKNSKKSPEKVFRILDMYNSIVEHWTEIETTFESAIRSQAMTSLVKLGEFIRMALAEFETALQKESSKTTVAGGGIHALTIDTMNYIILLADYSYVLSDILDESPPPAKSSLPESYFGMADSDESPAPAISLRFAWLILILLCKLDGKAKHYKDVSLAYLFLANNLRYIVVKVRSSNLKYLLGENWISKQEQKIKKFASNYEQLGWSHVIQSLPREPNASMTPQQVKEIFKRFNSSFEQVHRKQSLYVVPNSKLRDDLKVSIARKILPVYREFYNIHKNTIAKERYSSHVIKYSPEDLAHYLSDLFFGPIELGSSSSVESSPSRTIPSQLQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="76243" PGL_stop="75532"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="76243" e_stop="75532"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="76243" e_stop="75532" e_length="712"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76243" stop="75532"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U328495" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCATTTTACTCTACTCTTCATTTATACATCCAAAAACTATATACCAAATTTTTTTGATTATTTCGCTATCGCAATAACAAAATCCACTCAATTATTTCTCAAAACATAACACGAAAATCATGCCGAGAAAAGGAATGAGAACACTGAATTGGTTTTCACCAAAACACAATTCAGCAACTGATGTTAATTCTCCATCTACTTCACAATTCTCATCTCCTTCCCGATTCGCCTTTTCGCCATCCAGACCGAGTTTTTCTGAAGCAGTGATTGATCGAACGATCGAGATGGCTGAGCAGATGATCACGAAATGGGATCCTGATACTACCACCTTCGCGAAGGTGACTTCTCTGTTCTATGAAAATCGAAAAGAAGCTAAGGATTTCATTAAATATGTGAATAATCTACATAAGGCTATGCATTTTCATGCTAGTGAGAATTCCAGATCTGATAAGCTTGTTCGTGCTCAATCGTTGATGCAAATCGCGATGAAACGACTGCAGAAGGAGTTTTATCAGATTTTATCAATCAACAGAGCACTTTTGGATCCTGAATCTATATCCACTGTGTCTTCACGTACTTCGATAAGTACTCGATCGAGTACCTCTGAATTTAACGTTGAAGATGATGATGATAATCGTGTTGCAATTGCTGGTGAATCTATTAATGAAGTTGAGGATATTTCTAATGTTGTAATGGCGGATTTGAGATTGAT</gDNA_template>
            <first_frame> S  F  Y  S  T  L  H  L  Y  I  Q  K  L  Y  T  K  F  F  *  L  F  R  Y  R  N  N  K  I  H  S  I  I  S  Q  N  I  T  R  K  S  C  R  E  K  E  *  E  H  *  I  G  F  H  Q  N  T  I  Q  Q  L  M  L  I  L  H  L  L  H  N  S  H  L  L  P  D  S  P  F  R  H  P  D  R  V  F  L  K  Q  *  L  I  E  R  S  R  W  L  S  R  *  S  R  N  G  I  L  I  L  P  P  S  R  R  *  L  L  C  S  M  K  I  E  K  K  L  R  I  S  L  N  M  *  I  I  Y  I  R  L  C  I  F  M  L  V  R  I  P  D  L  I  S  L  F  V  L  N  R  *  C  K  S  R  *  N  D  C  R  R  S  F  I  R  F  Y  Q  S  T  E  H  F  W  I  L  N  L  Y  P  L  C  L  H  V  L  R  *  V  L  D  R  V  P  L  N  L  T  L  K  M  M  M  I  I  V  L  Q  L  L  V  N  L  L  M  K  L  R  I  F  L  M  L  *  W  R  I  *  D  *  </first_frame>
            <second_frame>  H  F  T  L  L  F  I  Y  T  S  K  N  Y  I  P  N  F  F  D  Y  F  A  I  A  I  T  K  S  T  Q  L  F  L  K  T  *  H  E  N  H  A  E  K  R  N  E  N  T  E  L  V  F  T  K  T  Q  F  S  N  *  C  *  F  S  I  Y  F  T  I  L  I  S  F  P  I  R  L  F  A  I  Q  T  E  F  F  *  S  S  D  *  S  N  D  R  D  G  *  A  D  D  H  E  M  G  S  *  Y  Y  H  L  R  E  G  D  F  S  V  L  *  K  S  K  R  S  *  G  F  H  *  I  C  E  *  S  T  *  G  Y  A  F  S  C  *  *  E  F  Q  I  *  *  A  C  S  C  S  I  V  D  A  N  R  D  E  T  T  A  E  G  V  L  S  D  F  I  N  Q  Q  S  T  F  G  S  *  I  Y  I  H  C  V  F  T  Y  F  D  K  Y  S  I  E  Y  L  *  I  *  R  *  R  *  *  *  *  S  C  C  N  C  W  *  I  Y  *  *  S  *  G  Y  F  *  C  C  N  G  G  F  E  I  D </second_frame>
            <third_frame>   I  L  L  Y  S  S  F  I  H  P  K  T  I  Y  Q  I  F  L  I  I  S  L  S  Q  *  Q  N  P  L  N  Y  F  S  K  H  N  T  K  I  M  P  R  K  G  M  R  T  L  N  W  F  S  P  K  H  N  S  A  T  D  V  N  S  P  S  T  S  Q  F  S  S  P  S  R  F  A  F  S  P  S  R  P  S  F  S  E  A  V  I  D  R  T  I  E  M  A  E  Q  M  I  T  K  W  D  P  D  T  T  T  F  A  K  V  T  S  L  F  Y  E  N  R  K  E  A  K  D  F  I  K  Y  V  N  N  L  H  K  A  M  H  F  H  A  S  E  N  S  R  S  D  K  L  V  R  A  Q  S  L  M  Q  I  A  M  K  R  L  Q  K  E  F  Y  Q  I  L  S  I  N  R  A  L  L  D  P  E  S  I  S  T  V  S  S  R  T  S  I  S  T  R  S  S  T  S  E  F  N  V  E  D  D  D  D  N  R  V  A  I  A  G  E  S  I  N  E  V  E  D  I  S  N  V  V  M  A  D  L  R  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0113I06.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76166" stop="75534"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>633</number_coding_nucleotides>
                  <number_encoded_amino_acids>211</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QNPLNYFSKHNTKIMPRKGMRTLNWFSPKHNSATDVNSPSTSQFSSPSRFAFSPSRPSFSEAVIDRTIEMAEQMITKWDPDTTTFAKVTSLFYENRKEAKDFIKYVNNLHKAMHFHASENSRSDKLVRAQSLMQIAMKRLQKEFYQILSINRALLDPESISTVSSRTSISTRSSTSEFNVEDDDDNRVAIAGESINEVEDISNVVMADLRL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="90044" PGL_stop="90535"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="90044" e_stop="90535"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="90044" e_stop="90535" e_length="492"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90044" stop="90535"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U331206" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTTTTTCATCTTCTTCAAACAATTCTTGTCACCTTAAAAACACTCAAAAATCATACAAATTTTCAGTTACAAATCTTGAATTTTTTTCCACTTTTACCATTTCCCCATTCTTGATTTGCAAAAAAAGCTATGAAATTGTACAAACAGTCAAGTAGAAGAGATGAGGATTTACCCAATTCTCAACCATACTCACCAAAGACCTTGAAATACCCAAGAGGATCTCTTCCCAGATCCATCAATTATCTCCTCAAAGAACAAAGACTTCTGTTCATTCTTGTTGGTATTCTAATTGGTTCAACTTTTTTCATCATTCAACCTAGTCTATCTCATCTTAGCACATCTTCTGAACCACATTCTTCAATACCCAGATCATATAATGCTTTAAATCATGAATCTTTATCAAAATTAGCTTCATATAATGATAAAGATGTAAGCTTTAGGGTGAATGGGGTTACTGGGAGGGTTCCAGTTGGGGTTGGGAGGAAAAGGA</gDNA_template>
            <first_frame> F  F  F  I  F  F  K  Q  F  L  S  P  *  K  H  S  K  I  I  Q  I  F  S  Y  K  S  *  I  F  F  H  F  Y  H  F  P  I  L  D  L  Q  K  K  L  *  N  C  T  N  S  Q  V  E  E  M  R  I  Y  P  I  L  N  H  T  H  Q  R  P  *  N  T  Q  E  D  L  F  P  D  P  S  I  I  S  S  K  N  K  D  F  C  S  F  L  L  V  F  *  L  V  Q  L  F  S  S  F  N  L  V  Y  L  I  L  A  H  L  L  N  H  I  L  Q  Y  P  D  H  I  M  L  *  I  M  N  L  Y  Q  N  *  L  H  I  M  I  K  M  *  A  L  G  *  M  G  L  L  G  G  F  Q  L  G  L  G  G  K  G </first_frame>
            <second_frame>  F  F  S  S  S  S  N  N  S  C  H  L  K  N  T  Q  K  S  Y  K  F  S  V  T  N  L  E  F  F  S  T  F  T  I  S  P  F  L  I  C  K  K  S  Y  E  I  V  Q  T  V  K  *  K  R  *  G  F  T  Q  F  S  T  I  L  T  K  D  L  E  I  P  K  R  I  S  S  Q  I  H  Q  L  S  P  Q  R  T  K  T  S  V  H  S  C  W  Y  S  N  W  F  N  F  F  H  H  S  T  *  S  I  S  S  *  H  I  F  *  T  T  F  F  N  T  Q  I  I  *  C  F  K  S  *  I  F  I  K  I  S  F  I  *  *  *  R  C  K  L  *  G  E  W  G  Y  W  E  G  S  S  W  G  W  E  E  K   </second_frame>
            <third_frame>   F  F  H  L  L  Q  T  I  L  V  T  L  K  T  L  K  N  H  T  N  F  Q  L  Q  I  L  N  F  F  P  L  L  P  F  P  H  S  *  F  A  K  K  A  M  K  L  Y  K  Q  S  S  R  R  D  E  D  L  P  N  S  Q  P  Y  S  P  K  T  L  K  Y  P  R  G  S  L  P  R  S  I  N  Y  L  L  K  E  Q  R  L  L  F  I  L  V  G  I  L  I  G  S  T  F  F  I  I  Q  P  S  L  S  H  L  S  T  S  S  E  P  H  S  S  I  P  R  S  Y  N  A  L  N  H  E  S  L  S  K  L  A  S  Y  N  D  K  D  V  S  F  R  V  N  G  V  T  G  R  V  P  V  G  V  G  R  K  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0113I06.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90160" stop="90534"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>375</number_coding_nucleotides>
                  <number_encoded_amino_acids>125</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FAKKAMKLYKQSSRRDEDLPNSQPYSPKTLKYPRGSLPRSINYLLKEQRLLFILVGILIGSTFFIIQPSLSHLSTSSEPHSSIPRSYNALNHESLSKLASYNDKDVSFRVNGVTGRVPVGVGRKR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 67 chains have been computed
$ 
$ memory statistics:
$ 149856 bytes spliced alignments in total
$ 12 spliced alignments have been stored
$ 12488 bytes was the average size of a spliced alignment
$ 14448 bytes predicted gene locations in total
$ 8 predicted gene locations have been stored
$ 1806 bytes was the average size of a predicted gene location
$ 9 megabytes was the average size of the backtrace matrix
$ 116 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 13:28:35
-->
