<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-02-23 17:40:23"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U329483" ref_strand="+" ref_description="SGN-U329483        Tomato 200607 #1 [3 ESTs aligned]">
      <seq>aaaaaagaacttggataatactcctacttgtaaaatcccatagtcttcacataaaatcatttagaagagcttaatttgatgggaatttaaaagggttgtcttgaaatacttcaattttttctaatcttggaaaactgtattaagctcaaaggtgacatttttatcttgtcataagcaagaaagttcaaaatgttgcctaaagaaccatcattttgtatatataatactgaagatggggttgatgagatgaaggaaaatcaagatttggttaggtctgtgacaataggggatattgtatcagatataggtagtagtgatttcagttttgggaaaaaggggatggggttgattgaggaagatgagaatgaagatgaggaaaaaagggttttttatgaggttaatgagctaggatttgaagagagtgaacaagtaattagttcaaagtatcatggtggggttgagtttgaacctttagattttgatggaaatggagatgttgacgaatattatcaaagggttcttaaagaagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="1" stop="871"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41" g_stop="571" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="531" r_length="531" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-U329483" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U329483" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41" e_stop="571"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAGAACTTGGATAATACTCCTACTTGTAAAATCCCATAGTCTTCACATAAAATCATTTAGAAGAGCTTAATTTGATGGGAATTTAAAAGGGTTGTCTTGAAATACTTCAATTTTTTCTAATCTTGGAAAACTGTATTAAGCTCAAAGGTGACATTTTTATCTTGTCATAAGCAAGAAAGTTCAAAATGTTGCCTAAAGAACCATCATTTTGTATATATAATACTGAAGATGGGGTTGATGAGATGAAGGAAAATCAAGATTTGGTTAGGTCTGTGACAATAGGGGATATTGTATCAGATATAGGTAGTAGTGATTTCAGTTTTGGGAAAAAGGGGATGGGGTTGATTGAGGAAGATGAGAATGAAGATGAGGAAAAAAGGGTTTTTTATGAGGTTAATGAGCTAGGATTTGAAGAGAGTGAACAAGTAATTAGTTCAAAGTATCATGGTGGGGTTGAGTTTGAACCTTTAGATTTTGATGGAAATGGAGATGTTGAGGAATATTATAAAAGGGTTCTTAAAGAAGAT</genome_strand>
        <mrna_strand>AAAAAAGAACTTGGATAATACTCCTACTTGTAAAATCCCATAGTCTTCACATAAAATCATTTAGAAGAGCTTAATTTGATGGGAATTTAAAAGGGTTGTCTTGAAATACTTCAATTTTTTCTAATCTTGGAAAACTGTATTAAGCTCAAAGGTGACATTTTTATCTTGTCATAAGCAAGAAAGTTCAAAATGTTGCCTAAAGAACCATCATTTTGTATATATAATACTGAAGATGGGGTTGATGAGATGAAGGAAAATCAAGATTTGGTTAGGTCTGTGACAATAGGGGATATTGTATCAGATATAGGTAGTAGTGATTTCAGTTTTGGGAAAAAGGGGATGGGGTTGATTGAGGAAGATGAGAATGAAGATGAGGAAAAAAGGGTTTTTTATGAGGTTAATGAGCTAGGATTTGAAGAGAGTGAACAAGTAATTAGTTCAAAGTATCATGGTGGGGTTGAGTTTGAACCTTTAGATTTTGATGGAAATGGAGATGTTGACGAATATTATCAAAGGGTTCTTAAAGAAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U322791" ref_strand="+" ref_description="SGN-U322791        Tomato 200607 #1 [7 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr1:1234198-1236033 REVERSE | Aliases: T1G11.22, T1G11_22(evalue: 2e-26, score=116) genbank/nr: Tetratricopeptide-like(evalue: 2e-30, score=136)">
      <seq>gaggagaagatccctgtaaccctttgtttttgaggaattatgctcaacttttgcagttgcttagaaatgctttatttataagccgagggtctagcggaaacaacctctctatctctatgagataaaggaaagtctaagggagatcttcctggagctgaacactattactttcaagctacactagctgatccaaaagatggagataccttgtcacagtatgctaagttagtatgggagctgcaccaagataaagatagagcatcagattactttgaacgtgcagtacgtactgctcctgagaacagccatgttcttggagcatatgctagtttcctctgggacattactgacgatgaaagtgaggatgaaatgaacacacagagtgataagactaagattgaggaaagtggggaagctactgtatcccggaacttagattacgaagaagctgacagacctgttagccctcccttacatcttgcagcaggattaggaattgggttaatctagttggtggcagctctcctgttgattatactgcagctgtatctgatatggacggaaatgccgaggaggagtacatgagaatgatcaaagaatatcctcatcactccgtgcttttaagaaactatgctcagtttcttagtcagtctaagggagacctactaggtgctgaagaatattactcacacgcaatactagctgatcctactgatggagaaactatttcacagtatgccatgttgatatggcaacttcatcaggataaagataaagcctcaacctactttaagagggcagtacaagcttctccacaagacagcgacgtgcttgctgcatatgctaggtttctctggcaaacagaggaagatgaagacggagaagaagatgaaacgttaggtgatcacaatggagcgccacttctgcaaggagtcgcctaaagcctgatgtcaaatgaatttcacaatccagattctaattcatattttagtttctcaagcttttcgcattatctaaagacttggagatttctcttgttgtggaggatcaactattctgggaaaatttttagatggtaagtgttgtttaatgagcaataaaatgtgcacaataatgttaaattgactttgtacaatgttatttttgggaataatgatagcagttgaaagagttgaatgaaaaattaaatagtgactctgcattgtagtaatatactgttttgtacctctatttgtatacaacattcacaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="265" stop="4685"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="561" g_stop="616" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="617" i_stop="711" i_length="95">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="712" g_stop="787" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="132" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="788" i_stop="1936" i_length="1149">
            <donor d_prob="0.440" d_score="1.00"/>
            <acceptor a_prob="0.822" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1937" g_stop="2109" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="305" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2110" i_stop="2492" i_length="383">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2493" g_stop="2583" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="396" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="2584" i_stop="2662" i_length="79">
            <donor d_prob="0.846" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="2663" g_stop="2917" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="650" r_length="254" r_score="0.996"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="2918" i_stop="3404" i_length="487">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="3405" g_stop="3577" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="651" r_stop="823" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="3578" i_stop="3951" i_length="374">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="3952" g_stop="4385" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="824" r_stop="1257" r_length="434" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-U322791" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>1258</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U322791" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="561" e_stop="616"/>
          <exon e_start="712" e_stop="787"/>
          <exon e_start="1937" e_stop="2109"/>
          <exon e_start="2493" e_stop="2583"/>
          <exon e_start="2663" e_stop="2917"/>
          <exon e_start="3405" e_stop="3577"/>
          <exon e_start="3952" e_stop="4385"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAGAAGATCCCTGTAACCCTTTGTTTTTGAGGAATTATGCTCAACTTTTGCAGGTCAGTCTTTATGTCTTGTTCCTTTTGAGAAACCATTTTTCTCTTTCCATTTCACATTATTTTATTGTGGTTACTGCGTTTATTCCCTTTTTCAGTTGCTTAGAAATGCTTTATTTATAAGCCGAGGGTCTAGCGGAAACAACCTCTCTATCTCTATGAGATAAAGGAAAGGTCTGCGTACACTTTATCCTTCCCGGACCCCATTTGTGTGATTACAATGGACATGTTGTTGTTGTTGTTGTCGTCATTGTGTTTTTTTAGTGTTTGATGGCATGAGTTGAACTTAAACCGGAGAAAAATGGTCAGTGAGGAGTCATATAGCGGACTGGAATTTGGGATTGAGGTCAAGTATTGTAGGATTGCGGAAGTCCGTTTCTTGTGAGTTCTATAACTGCAAACTTAGAATTCTTAACATGGTCAGTGATTATCCATATAGCCGACCATTATTTGTTTGGGATTGAGATCATAGTTGTTGTTGTATACATGTTTGATCCTCATTGTAAATCCTTTAGAGATTCTAGGATTGTGAAAGTAAGGTTCTTGTGAGTTCTATAACTGCAAAGTTAGAATCTTAAACATGGCTAGTGATGATTCATATAGCCGACTGTAACTTGTTTGGTATTGAGATCATAGTTATTGTTGCTGTTGTATAATTGTTTGATTCTCTTTGTAAGTCCTTTACATATTCTAGGATTGTGAAAAGTAAGTTCTTGTGAGTTCTATAGCTGCACAGTTGGAATTATAATTGTGGAACTAAAGTCACCTCTGTGAATTTGATCTCATCTTTGGCTTCTTGCTCTTGCTGTAAGTTGCCCCAATAAAATAAACTAGTTGGATGAGTATGCCATGATAGTAATAGTAGATTGAATAAATTTAAACAAATTAGAATCCAATTTTGAACCTTCTATAATCAGTTCACTCATTTCGAAGCTTAAATCTTCTAATACTATGGATTAGCAGTTGCACAACCAGGTCACGAGAAGGGAGTAAGTGAGAAGACTCTTCTTTCATGATGTTCTAGGATGCCAATGTACGTCGACAATAAATTTATTAGTGGTTTGAAATGTAAAAAGCATACAACAGTAACTGATTCATGTGCTATTCTGTTCTTCCTAATAGATACTTCGGAAATCTGGTCATTATAGCTGTTGTGATTCTTTGACTGGAAAAGCACATAACATGATATGCTTAGATGCTATGTGGTTTTAGATATATCTCCATCTTTATTTTTGTCTTTTTCTTTAGATCTAGTCCAATCTTGATTATGTTTCTCTGGCGACAACTTTTTCTTCATGTAACCCACTGTATTCTTGTCTCTAGTCTAAGGGAGATCTTCCTGGAGCTGAACACTATTACTTTCAAGCTACACTAGCTGATCCAAAAGATGGAGATACCTTGTCACAGTATGCTAAGTTAGTATGGGAGCTGCACCAAGATAAAGATAGAGCATCAGATTACTTTGAACGTGCAGTACGTACTGCTCCTGAGAACAGGTTATACTTGACTTGCACCTTTCGTTGAAATGAGAGAATGAGTTATTGGTTCAATTAGATATTGATTTACAAAACCTGGGCATGTGAAGAATCTATTAGTCACCTCTCCTCATCTTCTCCTTTTTATTAGTATTTGTGTAGCATCTTAGTCATAAATTTTACCTATTGCAGCTTCTTTGCTTTGTTCATCTTGCTATTTTGTTGTTTTTATTTTTTCTTTCAATCCTGCTTTGATTAAAATTCTTTTGAGCTGAGGGTCTATGGAAAAAGCCTTTCTATCCCACAAAGGTGGGGGTAAGGTTTAGGTACATGTAACCCTGCCCAAACCCCACTTGTTGAATTACACTTATGTCATTGTTGTTGAAATCTATTATTGTTTCCAGCCATGTTCTTGGAGCATATGCTAGTTTCCTCTGGGACATTACTGACGATGAAAGTGAGGATGAAATGAACACACAGAGTGATAAGACTAAGGTTTCTTCCGTTCGTTCTGCCTCAACGAGTATATATGTGTGAACTCTGTTTGACTTTAAATTTCTTCTGGATGTGTCAGATTGAGGAAAGTGGGGAAGCTACTGTATCCCGGAACTTAGATTACGAAGAAGCTGACAGACCTGTTAGCCCTCCCTTACATCTTGCAGCAGGATTAGGAATTGGGGTTAATCTAGTTGGTGGCAGCTCTCCTGTTGATTATACTGCAGCTGTATCTGATATGGACGGAAATGCCGAGGAGGAGTACATGAGAATGATCAAAGAATATCCTCATCACTCCGTGCTTTTAAGAAACTATGCTCAGTTTCTTAGTCAGGTGAATGTTTCATATTTTCTGCACTAAATGTTCTTTATTAACATGTATATCATCCATCATATGCTTACGACAATGCCCATTTGATATCTATATATTATCTTGATTTAGAAATGTGTGATTGTCCGAAGCTGCAAACATCGACACAGTCGTTCTCCTTAAGTGTCTGAGATGTCTCAAGCTCCCTCCCGAATATGCTTTTTAAGATTTCAGCCCTTTCTTTAAATTGTACAAAAGAACAGCTGGTCATCCTAATTCAGTAGGATTGGGATGGAGAAATATAAATGCATGCTCAAATATGAAATTTTCTTGAACATTATGTCATTCCTTTCACCAGATCTTTACAATAGCTACAACAGTTTATCGTTTACTTGTCAGAACGTAACCAAAAACAAGAAAAGCTATCTCCCTTCATTGGTGCTTACATATTAATAATATCGACTGGTCTTGCTAATTCTGACATTTCTCATGTTTGCTGTTGGACTGGCAGTCTAAGGGAGACCTACTAGGTGCTGAAGAATATTACTCACACGCAATACTAGCTGATCCTACTGATGGAGAAACTATTTCACAGTATGCCATGTTGATATGGCAACTTCATCAGGATAAAGATAAAGCCTCAACCTACTTTAAGAGGGCAGTACAAGCTTCTCCACAAGACAGGTAATATTGAATTGAAGCCCCTCGGTTTTTTATTCGCAACACGTTGAATTAAAAGTATAGCGGGAACTTAATAACCTAAGCACTTTTCCTACTTGGTCAGTTATTAAGATGATTTTACAGATTTATGTGATGTGAACGAAATCTGCTACTGTTTGATAACATTGAAAAGGTTAATGACAAAAGATACTTATACAAGGTTGATGGTAACTTGGTATTATGTGAATGTATTCGTGGAAAAATATAAGAATTTTGGTGATCTTTGGTGTGATATCAAAGCATTTGTACGTTGCGTTTATAATTGCTACTTGCACATCAAGTTCATTTTTCTCATTGTCTGAGACACTGAGTTACTAGCTTGCTTTTTTGCTTTTCAGCGACGTGCTTGCTGCATATGCTAGGTTTCTCTGGCAAACAGAGGAAGATGAAGACGGAGAAGAAGATGAAACGTTAGGTGATCACAATGGAGCGCCACTTCTGCAAGGAGTCGCCTAAAGCCTGATGTCAAATGAATTTCACAATCCAGATTCTAATTCATATTTTAGTTTCTCAAGCTTTTCGCATTATCTAAAGACTTGGAGATTTCTCTTGTTGTGGAGGATCAACTATTCTGGGAAAATTTTTAGATGGTAAGTGTTGTTTAATGAGCAATAAAATGTGCACAATAATGTTAAATTGACTTTGTACAATGTTATTTTTGGGAATAATGATAGCAGTTGAAAGAGTTGAATGAAAAATTAAATAGTGACTCTGCATTGTAGTAATATACTGTTTTGTACCTCTATTTGTATACAACATTCACAAATGACAA</genome_strand>
        <mrna_strand>GAGGAGAAGATCCCTGTAACCCTTTGTTTTTGAGGAATTATGCTCAACTTTTGCAG...............................................................................................TTGCTTAGAAATGCTTTATTTATAAGCCGAGGGTCTAGCGGAAACAACCTCTCTATCTCTATGAGATAAAGGAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTAAGGGAGATCTTCCTGGAGCTGAACACTATTACTTTCAAGCTACACTAGCTGATCCAAAAGATGGAGATACCTTGTCACAGTATGCTAAGTTAGTATGGGAGCTGCACCAAGATAAAGATAGAGCATCAGATTACTTTGAACGTGCAGTACGTACTGCTCCTGAGAACAG...............................................................................................................................................................................................................................................................................................................................................................................................CCATGTTCTTGGAGCATATGCTAGTTTCCTCTGGGACATTACTGACGATGAAAGTGAGGATGAAATGAACACACAGAGTGATAAGACTAAG...............................................................................ATTGAGGAAAGTGGGGAAGCTACTGTATCCCGGAACTTAGATTACGAAGAAGCTGACAGACCTGTTAGCCCTCCCTTACATCTTGCAGCAGGATTAGGAATT-GGGTTAATCTAGTTGGTGGCAGCTCTCCTGTTGATTATACTGCAGCTGTATCTGATATGGACGGAAATGCCGAGGAGGAGTACATGAGAATGATCAAAGAATATCCTCATCACTCCGTGCTTTTAAGAAACTATGCTCAGTTTCTTAGTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTAAGGGAGACCTACTAGGTGCTGAAGAATATTACTCACACGCAATACTAGCTGATCCTACTGATGGAGAAACTATTTCACAGTATGCCATGTTGATATGGCAACTTCATCAGGATAAAGATAAAGCCTCAACCTACTTTAAGAGGGCAGTACAAGCTTCTCCACAAGACAG......................................................................................................................................................................................................................................................................................................................................................................................CGACGTGCTTGCTGCATATGCTAGGTTTCTCTGGCAAACAGAGGAAGATGAAGACGGAGAAGAAGATGAAACGTTAGGTGATCACAATGGAGCGCCACTTCTGCAAGGAGTCGCCTAAAGCCTGATGTCAAATGAATTTCACAATCCAGATTCTAATTCATATTTTAGTTTCTCAAGCTTTTCGCATTATCTAAAGACTTGGAGATTTCTCTTGTTGTGGAGGATCAACTATTCTGGGAAAATTTTTAGATGGTAAGTGTTGTTTAATGAGCAATAAAATGTGCACAATAATGTTAAATTGACTTTGTACAATGTTATTTTTGGGAATAATGATAGCAGTTGAAAGAGTTGAATGAAAAATTAAATAGTGACTCTGCATTGTAGTAATATACTGTTTTGTACCTCTATTTGTATACAACATTCACAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317342" ref_strand="+" ref_description="SGN-U317342        Tomato 200607 #1 [20 ESTs aligned] arabidopsis/peptide: AT5G43960.1 | Symbol: None | nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein, contains Pfam profiles PF02136: Nuclear transport factor 2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | chr5:17706015-17709166 REVERSE | Aliases: MRH10.6, MRH10_6 (evalue: 4e-78, score=289) genbank/nr: RNA-binding(evalue: 5e-82, score=308)">
      <seq>tttcagcagctctcactctttctctctctagaaccagtggtctcaagcggtcactccattttctctctctagaaattgtagagtcagtgacgaacgaattcagtgctatttactgcttgtggagtgtaatgggagaagaccctgttgctgcttttttgcttgcggcgcaaatgtgaatgctgtgaaaatctagggtttttttttgggggggattttagatcttttggtagatctagtttttcttgagattctcactctaattggattgacgagttcatttctaccgctgtttaagctgccgccgccaccgggttttacgaaatggcgacgccttttcacttgccagtcactgctgctcaggtggggacatacttcgtgggccagtattatcagatgttacagacccaaccggattttgttcaccagttctacagtgatgctagtactgtgcttcgaattgattccagcaccagagagactgcttcaggaatgctgcaaattcacacccttgtcacgtcgctacagtacactggaatagagataaaaacactccattccttggaatcatggaatggtggtgtccttgtgatggtttcaggttctgtcagtgtgaaaggtatcaataggagtaggaagttcgttcaatcatttttccttgcaccccaggaaaaaggatactttgtcctcaatgatatctttcactatgttgatgaggagcaaattcttcagcaaccattggcctatctagcacattcgaaccttgattcaaagctgaatgtttccaatgcacttcaggagcaagtgcccaactacatgtttggtggagaaatccaagcaagggagtttgttgatgctcctaaaattgaagataacgggccagtcaataactatagttttccggaggaacggcttcagcatgtctctgaagctgagaatatccttgaagataattttgcggttcagtcgaacggcccacttcagagtacaattaatgcagtacaagaccatttatcctgccctgttgaggaacctgttgcagagccccaaaagcatacttatgcttctattctacaagttactaaagggaattctgcacaaggactggcacagtcttctctcaacaaatctacacctccttcagagtggcaacatgtgccagagcctcctgctctgccatcagttcattcgactaatactattgagaggtataccgaggcaacagaagaggcttcagctgttgaagatgaagttgaagtcaagtctgtatatgtcaaaaatgttcctaccacaatggctgcttatgaaattgaggaggaattcaaaaagtttggtaaattaaagcctgatgctgttgccattagaacgcgaaaggacattgatgtatgctatgcatttgtcgaatttgaaaatgtaactggggttcagaatgcaattgaggcatctactgttcagattggtggacaccagttgtacattgaaggaaggagaccgaacagaaataacttaattcgaggaagaggaaggggtagaggcagagttagctactccatggatggaagggggcgctatggtggccgtggttttgggagaggtggtcaagacggaggtgaccgtgattatggcagatcaaggggaaatggttattatagacaaactcctcggcaggaaagagcttaccctagcaatcagcaaagcttgagaaatgagcaatactcatgggaataagctggaagttgaattcatgaaggacaaacaatacaccttcagtacaagccatgttgccaacagcttttttgtcttcatagttctccaaaacattagtatactttgagaagcatcaaaatttagatttgtggaaggaagcatccctaattcatataatttttttggcagaaatagcaagtgttggttttcagtacatgaatagacttttacttgaaggattatttatgcagttctgacctgctagtcgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="11686" stop="4496"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11386" g_stop="11027" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="360" r_length="360" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11026" i_stop="10048" i_length="979">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10047" g_stop="9913" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="495" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9912" i_stop="8764" i_length="1149">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8763" g_stop="8457" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="802" r_length="307" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8456" i_stop="7775" i_length="682">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.906" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7774" g_stop="7509" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="803" r_stop="1068" r_length="266" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7508" i_stop="7403" i_length="106">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7402" g_stop="7219" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1069" r_stop="1249" r_length="181" r_score="0.973"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7218" i_stop="7097" i_length="122">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="7096" g_stop="6975" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1250" r_stop="1371" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="6974" i_stop="6888" i_length="87">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="6887" g_stop="6822" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1372" r_stop="1437" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="6821" i_stop="6492" i_length="330">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="6491" g_stop="6413" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1438" r_stop="1516" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="6412" i_stop="5255" i_length="1158">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="5254" g_stop="4799" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="1517" r_stop="1972" r_length="456" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1980" polyA_stop="2030"/>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-U317342" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>1975</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U317342" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11386" e_stop="11027"/>
          <exon e_start="10047" e_stop="9913"/>
          <exon e_start="8763" e_stop="8457"/>
          <exon e_start="7774" e_stop="7509"/>
          <exon e_start="7402" e_stop="7219"/>
          <exon e_start="7096" e_stop="6975"/>
          <exon e_start="6887" e_stop="6822"/>
          <exon e_start="6491" e_stop="6413"/>
          <exon e_start="5254" e_stop="4799"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAGCAGCTCTCACTCTTTCTCTCTCTAGAACCAGTGGTCTCAAGCGGTCACTCCATTTTCTCTCTCTAGAAATTGTAGAGTCAGTGACGAACGAATTCAGTGCTATTTACTGCTTGTGGAGTGTAATGGGAGAAGACCCTGTTGCTGCTTTTTTGCTTGCGGCGCAAATGTGAATGCTGTGAAAATCTAGGGTTTTTTTTTGGGGGGGATTTTAGATCTTTTGGTAGATCTAGTTTTTCTTGAGATTCTCACTCTAATTGGATTGACGAGTTCATTTCTACCGCTGTTTAAGCTGCCGCCGCCACCGGGTTTTACGAAATGGCGACGCCTTTTCACTTGCCAGTCACTGCTGCTCAGGTATCTCTTCTGCTGAGTCTTTATCCGTTTATTCTTTGATTGTACAAGTCATTTGAAGAGAAGTTGGGTAGAAATGTGAAGGAAAATTTGTGTTTTTGCTGTTTCTCGCATGCTTGTTTAGTCATTTGTAAATGGAGCGAGGAATGCTCTTTTTTTTTAATTTTATATATATATCTGTGGTTATATATATATATATATATATATGAACGGATTTTTGGCTGAAGGGGTTGCCTTGGTTTTTGGCCATGGTCATGTGCCCTGTTTTGCTAGTTACGAATTGGCTGTGGCTGTTAAGTGACTTGGAAATGTAAAATTTCTGTAGTGTAAATCTGAAATCTTTTTGTTCCAAAAGACATTTCTGTAGTATAAAGAAGAACTTTTTATGTTTATGATGTTACCTGTTTCAAGAAAAAGTCTTCACGGATACGAGTGTGTATATTCTGTATCAAGAGATATAGGAACTACTAGAGGAATTTTTTTTGTTTAATTTTCCTATAAATGCGTATGTATGTAGTTGTGATGGTGTAGTGATTAAATATCCTAAATGGAGACAGGTTTTCTGAAAAAAGAGTTTCTAATCTAGTGATAAATGCAAACTTAATTAAGCATATAGCACAATAGAAACAAACGATATATATAAAAACTACCAGCTAGTTAAGGATAAATGGTCCAAGAAACAGTTAGTTATGGAGTAATTAGGACTAACCTATCTAGGTTAGTTGTTATCACCTGACTTACACTAGATTAGGTAAGGATAAGTGTGAGATTTAGAGATCATTTATTCCATATAGAACCATTCTTTTTCTTTAGAAGTCAAATTACTTATCAGTGTTACAATGAAATTAGTCTAAATAGAGGGGAATATATTAAGAATTCATATTGCCTATCCCAACTTGTTTAGGATTGAAGTGTTGTTTGATTGATTTTTAATGGCTGGGATTTGAATTTCATCTTTCTGCGGTTTTGGGTAATGATTCAGGTGGGGACATACTTCGTGGGCCAGTATTATCAGATGTTACAGACCCAACCGGATTTTGTTCACCAGTTCTACAGTGATGCTAGTACTGTGCTTCGAATTGATTCCAGCACCAGAGAGACTGCTTCAGGAATGCTGGTATTTTATCTTAAGTGCCTTCTTTAATTTCCTTATGAGTAAAACCTTCTTTGAAGTTATTTCTAAATTAAGTGCTTTTGGAGTTTGTGTTGGACTTTGGTTGCTTTTTTCTAGAGCTTGGCTGATCCAAATTTATTCAATTTACACTGGTGAAACCTAGCTGCAATTTTTTTATTCTAGTGCCTTTACTATCTTTTTGGGCAAAAAATAGATTAACAACAAAGCTTAACCATTCTCTAGTTTGTCTATCTAGAGATTGGACCTCAAATGCACATAAACTAGTTAGATAATTAATATTCTTCATTTTGTTGCTCTTGATGTGTTATACGTGGCTGACTTTAACATTAGACCAGCATTTTTTGATTCTGTGTAGTTCTTTCTGTTGTCATGAGCAAATTTTGGAGCTCATTACCAATTTTGTAACACTAATTATTGTGTAACTGATTGTTAGTACTATATGGGTTGTAATTGGCTAACCAGTGATTGGTTGCTCTTTCTAGATGCATGTCCTTAACTGGGACCTCATGTCTACAGTCATGCCATCTATATGGTGTCCATACGTTCTAGATTAGTTTTGAGATTTTTCATGATGTAGTCCTGTTCCAAAACAGAGCACCTAATATGGAAAAGTATCATATGAGGCTGCCTTAACATCCATGTCCTAGATTTTTAGGTTAAAAGTTGTTTTTCCTGAAAAACAAAAATTGAAGCTTGTCAATCAAGTTCTCTGTCTCTCCAGTCAGCTGTATTAGTGTTTTTTCTCTGTCTGCTAGAAGTTGAAATCTGAAAGAGTGTCAAGTTCCCCAAGGCATACATTTCCATCAGAGGAGCTTCTTATTTTGCTGCTGTGACGAGTTCCTTTTTAATATCATATACCAGTGGGTTACTTTATCTAAAAGAATTCATAACTATACCTTTGAGTTGATACTTGCATGCTTTAATATACTAATAAAATTACATGATTTCTAAGTCACAATAAAGGGAGATTTTATCTTTGAACCGCTTCTATAATTAATTCTATTTCAGTGTAATAAAATTTCTATTATTCTCAGCTAACTAATAATCATGGTTCGTGATGTGTATTATTCCCTTAGCCCCCAATATAAATCATTCTACTTCTTTTTTCATTGCTCTTTCTGTGTTCTGCAGCAAATTCACACCCTTGTCACGTCGCTACAGTACACTGGAATAGAGATAAAAACACTCCATTCCTTGGAATCATGGAATGGTGGTGTCCTTGTGATGGTTTCAGGTTCTGTCAGTGTGAAAGGTATCAATAGGAGTAGGAAGTTCGTTCAATCATTTTTCCTTGCACCCCAGGAAAAAGGATACTTTGTCCTCAATGATATCTTTCACTATGTTGATGAGGAGCAAATTCTTCAGCAACCATTGGCCTATCTAGCACATTCGAACCTTGATTCAAAGCTGAATGTTTCCAATGCACTTCAGGAGCAAGGTATGAGTTCAATCTTCAAGGTTTTCATCCTAAGATTGGTCTGATTGTTTTTTTTTGGGGGGGGGGGGATTCTCTAACTTCTTTTGTTTCATATTACTGTCTTTTAGATTAGTGTTACTATCCTTAAAAAATGACTTTTTTAAAGAAAAATCATTCCTGTAATGGTGAAGCCATTTTTACCTTTCTCTTGGAGGATTTACCCCACACAGGTAGGGGTAACGCCTATGTACATCTAACCCTCCCCAGACCCCACTTGTGGATGACACTGGGTATGTTGTACCTTTTCTGGAGGAGGAGAGAGGGTCCTGGGTTGTGAAATTGGAACAGAGCCATGCTGCGAGGGGGAGCATGGTGAATGCCTCACCCCTAAAATAAGTTGTCATTGGGGGAGAATATTACTAGTAGCTTCAAGTGCTGAAGCTCTCTATTTTCCCTATGTTCGTACTTTTATTTTTCTGGTGAGAAGTAGTTTTAAGTGATGTGCTATATATTGGTGAGAAGAAATTATGTACTTAAATGACAATTCTTCTGAAAGAAGACTCAGGATACTTTTTCTCTGTAATTCTACATGCTAATGCTGCAATACCACGATACTTTTTTTCTGTAATTCTACATGCTAATGCTGCAATACAACGAGACAAGAGAATGTGCATATATGAAGGATTAATGATGGTGTTTGCAGTGCCCAACTACATGTTTGGTGGAGAAATCCAAGCAAGGGAGTTTGTTGATGCTCCTAAAATTGAAGATAACGGGCCAGTCAATAACTATAGTTTTCCGGAGGAACGGCTTCAGCATGTCTCTGAAGCTGAGAATATCCTTGAAGATAATTTTGCGGTTCAGTCGAACGGCCCACTTCAGAGTACAATTAATGCAGTACAAGACCATTTATCCTGCCCTGTTGAGGAACCTGTTGCAGAGCCCCAAAAGCATACTTATGCTTCTATTGTATGCCATGACCCTTTTACCTTCTTTTAATGGTTACATTCTCATATTGTCTTGAGTATGCTTTTTGTGATCAACTAATTTTATTTGGTTGATTCTAATTTGGAAGCTACAAGTTACTAAAGGGAATTCTGCACAAGGACTGGCACAGTCTTCTCTCAACAAATCTACACCTCCTCCTTCAGAGTGGCAACATGTGCCAGAGCCTCCTGCTTTGCCATCAGTTCATTCGACTAATACTATTGAGAGGTATACTGAGGCAACAGAAGAGGCTTCAGCTGTTGAAGATGAAGGTTAGTTTCTCGTACTTTGGCATAATGTACTCATCCTGTCTTCTCAGGGATGTGAGTTATTTTTTAAGGGACCTCATTTGAGTGATATGCTTTTATGATTTTCCTTTTTGAACCTTTTGCAGTTGAAGTCAAGTCTGTATATGTCAAAAATGTTCCTACCACAATGGCTGCTTATGAAATTGAGGAGGAATTCAAAAAGTTTGGTAAATTAAAGCCTGATGCTGTTGCCATTAGAACGCGAAAGGTTTGTTCTATCATCTTTCTTTTGCCCTATACTCTTAAATCTAGATAAGGTCAATATTAAGTTCAATTGGAATTTGATGTGATGCAGGACATTGATGTATGCTATGCATTTGTCGAATTTGAAGATGTAACTGGGGTTCAGAATGCAATTGAGGTTTGAATTGACATTTCAAAATTTTGAGCCATCTTTATTATCCTTTTCGTGTTAAAGTTTCAATGCAATTGAGGGTTGAACTAACAGCCTATGTTTTTGTTATTTGATTAATTGAGAATGATGCTACATTTTATGTATGAGGTCAAATGAAGTAATAAACTGGCACAAGTTTGAAGTATTCCATGTAAAATTATGTGGGAGTTATGAATATGTTCTTTTTCGTTCTATTTATCTCTCCTTCATTGAATTGTTATTAATACCTTCAGCTAAGACTAATTACTGCATTTACATTCAGAGTAGCTACTGAAATCTATGTAAACTTTGTTGCAGGCATCTACTGTTCAGATTGGTGGACACCAGTTGTACATTGAAGGAAGGAGACCGAACAGAAATAACTTAATTCGAGGAAGTAAGTGGCTTTATCTTCTCAATTGTAGGTCAATAATTAAACTACTGCATTTCTCATTCACAGAAACAAGCACATCTTCAAGCTAAATTCTTGTTTTTTCCTAAGCATTATATTTTTCTACTGGTGATCTCTAGACACACCTTTAGCAATTTGCATCCCTTATCATCCACCAAGTAGGAATCAAAGTCAATGACATGACTCTTGACAAAACAAAAGTAGAAAAGATGTCCAGCCTGCAAGAAGAACAATTTTAAATACTCTTCTTGCAGGTGTTTGGAGACCTTTTCTACATTGTTTTGTCAAGTGTCATGTCATTTACTTTGATTCCTACTTGGTGGAAGATAAGGGATGTAAAAGAGTTGGATCAACCAACCTGTCCTCATACCTTCTTTTTTTTTTCTCGGAGGGAAGTTTTAACTCTGGAGAGAGCTGTGTTTTCATAAAAGCAGTTCAGTATAAAGTGAACAGTACTACTCCCCCCGCCCCAATTTATGTGAGTTAGTTTGACTTGACTCAGAGTTTTAGAAAAAAAACTCTTCAAACTCGAGGTTTAAAATAAGTTGTAGATCTTTGTGTGACAAATCATTTCATGAAGGATAAAATGAGAATTTTAAAACCAAATTATTTCCAAGTATAAAAATGTTACGATTCTTTTTGAGTCTTGACTAAAAAGACGAGTCAATACAAATTGGGACAGAGGGAGTACTTTGTTGGATCTACTTGCAATACTTATTTTCGAGATGAATAATGAAACGCAGAAAGTAGAGAATAATCAGTGGGGGACTATTGTTACACCAGTTGACTTGCATTCTTGTCAGGCTGCAACTGATGTAAATATTTGGCTCCTACATCTTCACCATGGTATTAGTCTCAAAACAAATCATTATGCTGGTATCATTGGAATTTACTTAAGACCTCATAGTAGTAAATAACAAGTGGCCTTCATTTATACTTCAGGTAAATAAGGCTTATTATTTCGTTCCTGTGTGCATGTAATAGCCAAAATAGAACTGTGTTTAGGTATCATTTTGCTAAGCCTGTTCCTTGTCTGAAAGCTGACTCTTAACTTAAATTTTGAAGTCCTGAAATTTATTTTTTTTGCCATGCATCCTAAAAATATTAAGATTCGTTTTGTTTTTATTTAAAATGTGGACACAGGAGGAAGGGGTAGAGGCAGAGTTAGCTACTCCATGGACGGAAGGGGGCGCTATGGTGGCCGTGGTTTTGGGAGAGGTGGTCAAGACGGAGGTGACCGTGATTATGGCAGATCAAGGGGAAATGGTTATTATAGACAAACTCCTCGGCAGGAAAGAGCTTACCCTAGCAATCAGCAAAGCTTGAGAAATGAGCAATACTCATGGGAATAAGCTGGAAGTTGAATTCATGAAGGACAAACAATACACCTTCAGTACAAGCCATGTTGCCAACAGCTTTTTTGTCTTCATAGTTCTCCAAAACATTAGTATACTTTGAGAAGCATCAAAATTTAGATTTGTGGAAGGAAGCATCCCTAATTCATATAATTTTTTTGGCAGAAATAGCAAGTGTTGGTTTTCAGTACATGAATAGACTTTTACTTGAAGGATTATTTATGCAGTTCTGACCTGCTAGTCG</genome_strand>
        <mrna_strand>TTTCAGCAGCTCTCACTCTTTCTCTCTCTAGAACCAGTGGTCTCAAGCGGTCACTCCATTTTCTCTCTCTAGAAATTGTAGAGTCAGTGACGAACGAATTCAGTGCTATTTACTGCTTGTGGAGTGTAATGGGAGAAGACCCTGTTGCTGCTTTTTTGCTTGCGGCGCAAATGTGAATGCTGTGAAAATCTAGGGTTTTTTTTTGGGGGGGATTTTAGATCTTTTGGTAGATCTAGTTTTTCTTGAGATTCTCACTCTAATTGGATTGACGAGTTCATTTCTACCGCTGTTTAAGCTGCCGCCGCCACCGGGTTTTACGAAATGGCGACGCCTTTTCACTTGCCAGTCACTGCTGCTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGGACATACTTCGTGGGCCAGTATTATCAGATGTTACAGACCCAACCGGATTTTGTTCACCAGTTCTACAGTGATGCTAGTACTGTGCTTCGAATTGATTCCAGCACCAGAGAGACTGCTTCAGGAATGCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAATTCACACCCTTGTCACGTCGCTACAGTACACTGGAATAGAGATAAAAACACTCCATTCCTTGGAATCATGGAATGGTGGTGTCCTTGTGATGGTTTCAGGTTCTGTCAGTGTGAAAGGTATCAATAGGAGTAGGAAGTTCGTTCAATCATTTTTCCTTGCACCCCAGGAAAAAGGATACTTTGTCCTCAATGATATCTTTCACTATGTTGATGAGGAGCAAATTCTTCAGCAACCATTGGCCTATCTAGCACATTCGAACCTTGATTCAAAGCTGAATGTTTCCAATGCACTTCAGGAGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCCAACTACATGTTTGGTGGAGAAATCCAAGCAAGGGAGTTTGTTGATGCTCCTAAAATTGAAGATAACGGGCCAGTCAATAACTATAGTTTTCCGGAGGAACGGCTTCAGCATGTCTCTGAAGCTGAGAATATCCTTGAAGATAATTTTGCGGTTCAGTCGAACGGCCCACTTCAGAGTACAATTAATGCAGTACAAGACCATTTATCCTGCCCTGTTGAGGAACCTGTTGCAGAGCCCCAAAAGCATACTTATGCTTCTATT..........................................................................................................CTACAAGTTACTAAAGGGAATTCTGCACAAGGACTGGCACAGTCTTCTCTCAACAAATCTACA---CCTCCTTCAGAGTGGCAACATGTGCCAGAGCCTCCTGCTCTGCCATCAGTTCATTCGACTAATACTATTGAGAGGTATACCGAGGCAACAGAAGAGGCTTCAGCTGTTGAAGATGAAG..........................................................................................................................TTGAAGTCAAGTCTGTATATGTCAAAAATGTTCCTACCACAATGGCTGCTTATGAAATTGAGGAGGAATTCAAAAAGTTTGGTAAATTAAAGCCTGATGCTGTTGCCATTAGAACGCGAAAG.......................................................................................GACATTGATGTATGCTATGCATTTGTCGAATTTGAAAATGTAACTGGGGTTCAGAATGCAATTGAG..........................................................................................................................................................................................................................................................................................................................................GCATCTACTGTTCAGATTGGTGGACACCAGTTGTACATTGAAGGAAGGAGACCGAACAGAAATAACTTAATTCGAGGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAAGGGGTAGAGGCAGAGTTAGCTACTCCATGGATGGAAGGGGGCGCTATGGTGGCCGTGGTTTTGGGAGAGGTGGTCAAGACGGAGGTGACCGTGATTATGGCAGATCAAGGGGAAATGGTTATTATAGACAAACTCCTCGGCAGGAAAGAGCTTACCCTAGCAATCAGCAAAGCTTGAGAAATGAGCAATACTCATGGGAATAAGCTGGAAGTTGAATTCATGAAGGACAAACAATACACCTTCAGTACAAGCCATGTTGCCAACAGCTTTTTTGTCTTCATAGTTCTCCAAAACATTAGTATACTTTGAGAAGCATCAAAATTTAGATTTGTGGAAGGAAGCATCCCTAATTCATATAATTTTTTTGGCAGAAATAGCAAGTGTTGGTTTTCAGTACATGAATAGACTTTTACTTGAAGGATTATTTATGCAGTTCTGACCTGCTAGTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317341" ref_strand="+" ref_description="SGN-U317341        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: AT5G43960.1 | Symbol: None | nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein, contains Pfam profiles PF02136: Nuclear transport factor 2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | chr5:17706015-17709166 REVERSE | Aliases: MRH10.6, MRH10_6 (evalue: 3e-26, score=116) genbank/nr: gi|15240057|ref|NP_199209.1| NTF2-containing RNA-binding protein, putative [Arabidopsis thaliana] gi|9758555|dbj|BAB09056.1| gb|AAD20086.1~gene_id:MRH10.6~similar to unknown protein [Arabidopsis thaliana] gi|19347889|gb|AAL86001.1| unknown protein [Arabidopsis thaliana] gi|21281087|gb|AAM45065.1| unknown protein [Arabidopsis thaliana](evalue: 2e-24, score=116)">
      <seq>caaccattgggctatctaacgcattcaaaccttgattcacagctgaatgtttccaatgcactacacgagcaagtgcccaaatacatgcctgggggataaatcaaaacaagggagtttgttgatgctccgaaaattgaaaataacgggacaatcaataactatatatttccggaggaaccgcttcaacatgtctctaaagctgacaatatccttgaatataattttgcggtgcagccgaaaagaccacttcagataacaattaatgcaatacaaaaccatttatcctgacctgttgaggaacctgttgcaaacccccaaaatcatacttatgctactattctacaaattactaaaaggaattctgcacaacgactggaacagtcttctctcgaaaaatctacacctcatccttcaaagtggcaacatatgccacaacctcctgctctgccaacaggtcattcaactaatactattgagatgtacacccaggcaacacaacaggcttcatctgtagaagatgaagttgaagtcaagtctgtatatgtcaaaaatgttcctaccacaatggctgcttatgaaattgaggaggaattcaaaaagtttggtaaattaaagcctgatgctgttgccattagaacgcgaaaggacattgatgtatgctatgcatttgtcgaatttgaaaatgtaactggggttcagaatgcaattgaggcatctactgttcagattggtggacaccagttgtacattgaaggaaggagaccgaacagaaataacttaattcgaggaagaggaaggggtagaggcagagttagctactccatggatggaagggggcgctatggtggccgtgtttttgggagaggtggtcaagacggaggtgaccgtgattatggcagatcaaggggaaatggttattatagacaaactcctcggcaagaaagagcttaccctagcaatcagcaaagcttgagaaatgagcaatactcatgggattaagctgaagttgaattcatgaaggacagacaatacaccttcagtacaagccatgttgccaacagcttttttgtcttcaatagttctccaaaacacttagtatactttgagaaggcatcaaaaatttagagtttgtggaagggaaagcatccctaaattcaatataattttttggcagagaatatgcaaagggttggttttcacgtacactgaatagacttttacttgatataaaagggtttatgcacgttttgacctcgctagtcgaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="8829" stop="4532"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8529" g_stop="8457" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="0.904"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8456" i_stop="7775" i_length="682">
            <donor d_prob="0.994" d_score="0.92"/>
            <acceptor a_prob="0.906" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7774" g_stop="7509" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="339" r_length="266" r_score="0.880"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7508" i_stop="7403" i_length="106">
            <donor d_prob="0.995" d_score="0.92"/>
            <acceptor a_prob="0.932" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7402" g_stop="7219" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="523" r_length="184" r_score="0.875"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7218" i_stop="7097" i_length="122">
            <donor d_prob="0.997" d_score="0.84"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7096" g_stop="6975" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="645" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6974" i_stop="6888" i_length="87">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6887" g_stop="6822" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="646" r_stop="711" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="6821" i_stop="6492" i_length="330">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="6491" g_stop="6413" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="712" r_stop="790" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="6412" i_stop="5255" i_length="1158">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="5254" g_stop="4832" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="791" r_stop="1225" r_length="435" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1264" polyA_stop="1282"/>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-U317341" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>1213</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U317341" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8529" e_stop="8457"/>
          <exon e_start="7774" e_stop="7509"/>
          <exon e_start="7402" e_stop="7219"/>
          <exon e_start="7096" e_stop="6975"/>
          <exon e_start="6887" e_stop="6822"/>
          <exon e_start="6491" e_stop="6413"/>
          <exon e_start="5254" e_stop="4832"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACCATTGGCCTATCTAGCACATTCGAACCTTGATTCAAAGCTGAATGTTTCCAATGCACTTCAGGAGCAAGGTATGAGTTCAATCTTCAAGGTTTTCATCCTAAGATTGGTCTGATTGTTTTTTTTTGGGGGGGGGGGGATTCTCTAACTTCTTTTGTTTCATATTACTGTCTTTTAGATTAGTGTTACTATCCTTAAAAAATGACTTTTTTAAAGAAAAATCATTCCTGTAATGGTGAAGCCATTTTTACCTTTCTCTTGGAGGATTTACCCCACACAGGTAGGGGTAACGCCTATGTACATCTAACCCTCCCCAGACCCCACTTGTGGATGACACTGGGTATGTTGTACCTTTTCTGGAGGAGGAGAGAGGGTCCTGGGTTGTGAAATTGGAACAGAGCCATGCTGCGAGGGGGAGCATGGTGAATGCCTCACCCCTAAAATAAGTTGTCATTGGGGGAGAATATTACTAGTAGCTTCAAGTGCTGAAGCTCTCTATTTTCCCTATGTTCGTACTTTTATTTTTCTGGTGAGAAGTAGTTTTAAGTGATGTGCTATATATTGGTGAGAAGAAATTATGTACTTAAATGACAATTCTTCTGAAAGAAGACTCAGGATACTTTTTCTCTGTAATTCTACATGCTAATGCTGCAATACCACGATACTTTTTTTCTGTAATTCTACATGCTAATGCTGCAATACAACGAGACAAGAGAATGTGCATATATGAAGGATTAATGATGGTGTTTGCAGTGCCCAACTACATGTTTGGTGGAGAAATCCAAGCAAGGGAGTTTGTTGATGCTCCTAAAATTGAAGATAACGGGCCAGTCAATAACTATAGTTTTCCGGAGGAACGGCTTCAGCATGTCTCTGAAGCTGAGAATATCCTTGAAGATAATTTTGCGGTTCAGTCGAACGGCCCACTTCAGAGTACAATTAATGCAGTACAAGACCATTTATCCTGCCCTGTTGAGGAACCTGTTGCAGAGCCCCAAAAGCATACTTATGCTTCTATTGTATGCCATGACCCTTTTACCTTCTTTTAATGGTTACATTCTCATATTGTCTTGAGTATGCTTTTTGTGATCAACTAATTTTATTTGGTTGATTCTAATTTGGAAGCTACAAGTTACTAAAGGGAATTCTGCACAAGGACTGGCACAGTCTTCTCTCAACAAATCTACACCTCCTCCTTCAGAGTGGCAACATGTGCCAGAGCCTCCTGCTTTGCCATCAGTTCATTCGACTAATACTATTGAGAGGTATACTGAGGCAACAGAAGAGGCTTCAGCTGTTGAAGATGAAGGTTAGTTTCTCGTACTTTGGCATAATGTACTCATCCTGTCTTCTCAGGGATGTGAGTTATTTTTTAAGGGACCTCATTTGAGTGATATGCTTTTATGATTTTCCTTTTTGAACCTTTTGCAGTTGAAGTCAAGTCTGTATATGTCAAAAATGTTCCTACCACAATGGCTGCTTATGAAATTGAGGAGGAATTCAAAAAGTTTGGTAAATTAAAGCCTGATGCTGTTGCCATTAGAACGCGAAAGGTTTGTTCTATCATCTTTCTTTTGCCCTATACTCTTAAATCTAGATAAGGTCAATATTAAGTTCAATTGGAATTTGATGTGATGCAGGACATTGATGTATGCTATGCATTTGTCGAATTTGAAGATGTAACTGGGGTTCAGAATGCAATTGAGGTTTGAATTGACATTTCAAAATTTTGAGCCATCTTTATTATCCTTTTCGTGTTAAAGTTTCAATGCAATTGAGGGTTGAACTAACAGCCTATGTTTTTGTTATTTGATTAATTGAGAATGATGCTACATTTTATGTATGAGGTCAAATGAAGTAATAAACTGGCACAAGTTTGAAGTATTCCATGTAAAATTATGTGGGAGTTATGAATATGTTCTTTTTCGTTCTATTTATCTCTCCTTCATTGAATTGTTATTAATACCTTCAGCTAAGACTAATTACTGCATTTACATTCAGAGTAGCTACTGAAATCTATGTAAACTTTGTTGCAGGCATCTACTGTTCAGATTGGTGGACACCAGTTGTACATTGAAGGAAGGAGACCGAACAGAAATAACTTAATTCGAGGAAGTAAGTGGCTTTATCTTCTCAATTGTAGGTCAATAATTAAACTACTGCATTTCTCATTCACAGAAACAAGCACATCTTCAAGCTAAATTCTTGTTTTTTCCTAAGCATTATATTTTTCTACTGGTGATCTCTAGACACACCTTTAGCAATTTGCATCCCTTATCATCCACCAAGTAGGAATCAAAGTCAATGACATGACTCTTGACAAAACAAAAGTAGAAAAGATGTCCAGCCTGCAAGAAGAACAATTTTAAATACTCTTCTTGCAGGTGTTTGGAGACCTTTTCTACATTGTTTTGTCAAGTGTCATGTCATTTACTTTGATTCCTACTTGGTGGAAGATAAGGGATGTAAAAGAGTTGGATCAACCAACCTGTCCTCATACCTTCTTTTTTTTTTCTCGGAGGGAAGTTTTAACTCTGGAGAGAGCTGTGTTTTCATAAAAGCAGTTCAGTATAAAGTGAACAGTACTACTCCCCCCGCCCCAATTTATGTGAGTTAGTTTGACTTGACTCAGAGTTTTAGAAAAAAAACTCTTCAAACTCGAGGTTTAAAATAAGTTGTAGATCTTTGTGTGACAAATCATTTCATGAAGGATAAAATGAGAATTTTAAAACCAAATTATTTCCAAGTATAAAAATGTTACGATTCTTTTTGAGTCTTGACTAAAAAGACGAGTCAATACAAATTGGGACAGAGGGAGTACTTTGTTGGATCTACTTGCAATACTTATTTTCGAGATGAATAATGAAACGCAGAAAGTAGAGAATAATCAGTGGGGGACTATTGTTACACCAGTTGACTTGCATTCTTGTCAGGCTGCAACTGATGTAAATATTTGGCTCCTACATCTTCACCATGGTATTAGTCTCAAAACAAATCATTATGCTGGTATCATTGGAATTTACTTAAGACCTCATAGTAGTAAATAACAAGTGGCCTTCATTTATACTTCAGGTAAATAAGGCTTATTATTTCGTTCCTGTGTGCATGTAATAGCCAAAATAGAACTGTGTTTAGGTATCATTTTGCTAAGCCTGTTCCTTGTCTGAAAGCTGACTCTTAACTTAAATTTTGAAGTCCTGAAATTTATTTTTTTTGCCATGCATCCTAAAAATATTAAGATTCGTTTTGTTTTTATTTAAAATGTGGACACAGGAGGAAGGGGTAGAGGCAGAGTTAGCTACTCCATGGACGGAAGGGGGCGCTATGGTGGCCGTGGTTTTGGGAGAGGTGGTCAAGACGGAGGTGACCGTGATTATGGCAGATCAAGGGGAAATGGTTATTATAGACAAACTCCTCGGCAGGAAAGAGCTTACCCTAGCAATCAGCAAAGCTTGAGAAATGAGCAATACTCATGGGAATAAGCTGGAAGTTGAATTCATGAAGGACAAACAATACACCTTCAGTACAAGCCATGTTGCCAACAGCTTTTTTGTCTTC-ATAGTTCTCCAAAACA-TTAGTATACTTTGAGAA-GCATC-AAAATTTAGA-TTTGTGGAA-GG-AAGCATCCCT-AATTC-ATATAATTTTTTTGGCAGA-AATA-GC-AAGTGTTGGTTTTCA-GTACA-TGAATAGACTTTTACTTGA</genome_strand>
        <mrna_strand>CAACCATTGGGCTATCTAACGCATTCAAACCTTGATTCACAGCTGAATGTTTCCAATGCACTACACGAGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCCAAATACATGCCTGGGGGATAAATCAAAACAAGGGAGTTTGTTGATGCTCCGAAAATTGAAAATAACGGGACAATCAATAACTATATATTTCCGGAGGAACCGCTTCAACATGTCTCTAAAGCTGACAATATCCTTGAATATAATTTTGCGGTGCAGCCGAAAAGACCACTTCAGATAACAATTAATGCAATACAAAACCATTTATCCTGACCTGTTGAGGAACCTGTTGCAAACCCCCAAAATCATACTTATGCTACTATT..........................................................................................................CTACAAATTACTAAAAGGAATTCTGCACAACGACTGGAACAGTCTTCTCTCGAAAAATCTACACCTCATCCTTCAAAGTGGCAACATATGCCACAACCTCCTGCTCTGCCAACAGGTCATTCAACTAATACTATTGAGATGTACACCCAGGCAACACAACAGGCTTCATCTGTAGAAGATGAAG..........................................................................................................................TTGAAGTCAAGTCTGTATATGTCAAAAATGTTCCTACCACAATGGCTGCTTATGAAATTGAGGAGGAATTCAAAAAGTTTGGTAAATTAAAGCCTGATGCTGTTGCCATTAGAACGCGAAAG.......................................................................................GACATTGATGTATGCTATGCATTTGTCGAATTTGAAAATGTAACTGGGGTTCAGAATGCAATTGAG..........................................................................................................................................................................................................................................................................................................................................GCATCTACTGTTCAGATTGGTGGACACCAGTTGTACATTGAAGGAAGGAGACCGAACAGAAATAACTTAATTCGAGGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAAGGGGTAGAGGCAGAGTTAGCTACTCCATGGATGGAAGGGGGCGCTATGGTGGCCGTGTTTTTGGGAGAGGTGGTCAAGACGGAGGTGACCGTGATTATGGCAGATCAAGGGGAAATGGTTATTATAGACAAACTCCTCGGCAAGAAAGAGCTTACCCTAGCAATCAGCAAAGCTTGAGAAATGAGCAATACTCATGGGATTAAGCT-GAAGTTGAATTCATGAAGGACAGACAATACACCTTCAGTACAAGCCATGTTGCCAACAGCTTTTTTGTCTTCAATAGTTCTCCAAAACACTTAGTATACTTTGAGAAGGCATCAAAAATTTAGAGTTTGTGGAAGGGAAAGCATCCCTAAATTCAATATAA-TTTTTTGGCAGAGAATATGCAAAGGGTTGGTTTTCACGTACACTGAATAGACTTTTACTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U329827" ref_strand="+" ref_description="SGN-U329827        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative, similar to 29 kDa ribonucleoprotein chloroplast precursor {Nicotiana sylvestris} SP:Q08935, SP:Q08937; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) contains an AG-donor site at intron. | chr1:22097234-22098291 REVERSE | Aliases: T2K10.5, T2K10_5(evalue: 1e-20, score=96.3) genbank/nr: gi|558629|emb|CAA57551.1| chloroplast RNA binding protein [Phaseolus vulgaris] (evalue: 7e-23, score=109)">
      <seq>gaaagtttagcgcaagcatttcaagaatatggaactgttgttggtgctagggtactgtatgatggtgagaccgggagatctcgtggctacggttttgtgagctttgagactagagaagaaatggagaatgctcttaacaatctcaatggagtggaattggatggaagggcattgcgagttagcttagcacaagggaagaaacaataagatgggacaaaattctttgtatattagttgtataagttgaaatttgccatctacatatgaacaattttagttcatggattaagatggctaaaaaggcttttactaggtcaaaaggagatgtaactatttgtattacatcacacatacaatgagctttcttttttcttcttcttctctttcctttattttatgatttagagagagaatgtaattgtttctatcatattttagaaaactattgagtcatttagtacaagcaacttcactagataatgcttgggacctatttcttgtagaaatatactaagtaaataggaatatattttcaattaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="13777" stop="12451"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13477" g_stop="13325" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13324" i_stop="13137" i_length="188">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13136" g_stop="12741" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="549" r_length="396" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-U329827" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U329827" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13477" e_stop="13325"/>
          <exon e_start="13136" e_stop="12741"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGTTTAGCGCAAGCATTTCAAGAATATGGAACTGTTGTTGGTGCTAGGGTACTGTATGATGGTGAGACCGGGAGATCTCGTGGCTACGGTTTTGTGAGCTTTGAGACTAGAGAAGAAATGGAGAATGCTCTTAACAATCTCAATGGAGTGGTATGCATTTCTTGAACTCTCTTTTTCAAATCAGTTTGAGTGCATCTCACGTGAATGCATAAATATTGTATATCATAAGTGATATAATTGCATAAATATTGTATATCGTTGATACACGAAACTTCAATTTCGTGAGAAAAATGAAATAACTACTTACAATTTTACCCTTTTGTATATGTCTTTATCAGGAATTGGATGGAAGGGCATTGCGAGTTAGCTTAGCACAAGGGAAGAAACAATAAGATGGGACAAAATTCTTTGTATATTAGTTGTATAAGTTGAAATTTGCCATCTACATATGAACAATTTTAGTTCATGGATTAAGATGGCTAAAAAGGCTTTTACTAGGTCAAAAGGAGATGTAACTATTTGTATTACATCACACATACAATGAGCTTTCTTTTTTCTTCTTCTTCTCTTTCCTTTATTTTATGATTTAGAGAGAGAATGTAATTGTTTCTATCATATTTTAGAAAACTATTGAGTCATTTAGTACAAGCAACTTCACTAGATAATGCTTGGGACCTATTTCTTGTAGAAATATACTAAGTAAATAGGAATATATTTTCAATTATGGAGCCTAA</genome_strand>
        <mrna_strand>GAAAGTTTAGCGCAAGCATTTCAAGAATATGGAACTGTTGTTGGTGCTAGGGTACTGTATGATGGTGAGACCGGGAGATCTCGTGGCTACGGTTTTGTGAGCTTTGAGACTAGAGAAGAAATGGAGAATGCTCTTAACAATCTCAATGGAGTG............................................................................................................................................................................................GAATTGGATGGAAGGGCATTGCGAGTTAGCTTAGCACAAGGGAAGAAACAATAAGATGGGACAAAATTCTTTGTATATTAGTTGTATAAGTTGAAATTTGCCATCTACATATGAACAATTTTAGTTCATGGATTAAGATGGCTAAAAAGGCTTTTACTAGGTCAAAAGGAGATGTAACTATTTGTATTACATCACACATACAATGAGCTTTCTTTTTTCTTCTTCTTCTCTTTCCTTTATTTTATGATTTAGAGAGAGAATGTAATTGTTTCTATCATATTTTAGAAAACTATTGAGTCATTTAGTACAAGCAACTTCACTAGATAATGCTTGGGACCTATTTCTTGTAGAAATATACTAAGTAAATAGGAATATATTTTCAATTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U324142" ref_strand="+" ref_description="SGN-U324142        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: | Symbol: None | 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative, similar to 29 kDa ribonucleoprotein chloroplast precursor {Nicotiana sylvestris} SP:Q08935, SP:Q08937; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) contains an AG-donor site at intron. | chr1:22097234-22098291 REVERSE | Aliases: T2K10.5, T2K10_5(evalue: 2e-54, score=209) genbank/nr: gi|558629|emb|CAA57551.1| chloroplast RNA binding protein [Phaseolus vulgaris] (evalue: 2e-58, score=228)">
      <seq>tccgatcaaaaattgaaattccggcgaaatcatggcggccgcagctgccacagcaatagcttcttcgttttccagtcttcattctatacgtactaaatcaaatttgactaattccgatcatctacttaaaatttcatcagctagaactccaaatctaactttaatttcatcgtcggtaagtgaactgacgtcgatttacaagaagtggagggtattgcccaggctgtcagctgcggtggcgcaagaggaggcggaagcggcggtgacggaggaggaggtgccggcgccggcggtggatgaggaggagaaggtaggagagggttccgatgggagtagtgaaagtgaaggtgttaatactaagctttattttgggaatttgccgtatctttgtgatagtgcacaacttgctgggattgttcaagactatgctagtcctgaacttgttgaggttctttatgatagggacacaggtaaaagcagaggatttgcatttgtgacaatgagtactcttgaagattgcaagacagtcgtcgaaaatctagatggaagagagtatggtggcagaaccctaagggtgaatttctcggataagcctaaaccaaaagaaccactttaccccgaaacagaacacaaactctttgttggtaatttggcgtggtcagtctcatctgaaagtttagcgcaagcatttcaagaatatggaactgttgttggtgctagggtactgtatgatggtgagaccggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="15623" stop="13103"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15323" g_stop="14876" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="448" r_length="448" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14875" i_stop="13811" i_length="1065">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13810" g_stop="13709" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="550" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13708" i_stop="13598" i_length="111">
            <donor d_prob="0.918" d_score="1.00"/>
            <acceptor a_prob="0.730" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13597" g_stop="13403" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="745" r_length="195" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-U324142" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>745</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U324142" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15323" e_stop="14876"/>
          <exon e_start="13810" e_stop="13709"/>
          <exon e_start="13597" e_stop="13403"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGATCAAAAATTGAAATTCCGGCGAAATCATGGCGGCCGCAGCTGCCACAGCAATAGCTTCTTCGTTTTCCAGTCTTCATTCTATACGTACTAAATCAAATTTGACTAATTCCGATCATCTACTTAAAATTTCATCAGCTAGAACTCCAAATCTAACTTTAATTTCATCGTCGGTAAGTGAACTGACGTCGATTTACAAGAAGTGGAGGGTATTGCCCAGGCTGTCAGCTGCGGTGGCGCAAGAGGAGGCGGAAGCGGCGGTGACGGAGGAGGAGGTGCCGGCGCCGGCGGTGGATGAGGAGGAGAAGGTAGGAGAGGGTTCCGATGGGAGTAGTGAAAGTGAAGGTGTTAATACTAAGCTTTATTTTGGGAATTTGCCGTATCTTTGTGATAGTGCACAACTTGCTGGGATTGTTCAAGACTATGCTAGTCCTGAACTTGTTGAGGTATGCATTTTTACATAAATTAGAGTGAAGTATGAGTATCCGTATAGCCAATTTCGTCTCGTATCTCGTAATACATCCGAATCCATTTGAATACAATGTATCTGAAACAAATTACATCGATTTTTGACTCTATGTATTCGAGATAACGAAATGAGATAGTGTATTTGAGGACCAAAATATGGCACAAATGGTAATATCAAAAACCCATGGGAAGACTCGTAATTAGGCTCTAAACTAGTGGGATTTGTGTTCTTACTGAATTGTTTAGTTGAGGATTGAATTTCGATATATTATTGTGTTATAGTTACTTCTTTAAGTAGATTAAGGTGTTTGATCTATGCTCTGGTTTTTGTGTTATCATTTTGTGAACCACATTGACGCGTTAGGTGTTTACATAGAGTTGTTGATGTTGATGATCTTGATTACTATCTCATGGAAAATAAGTATTCGTAGAATAAATAGGTGCTAAAATATGAGTGTACGTCGTACCACCTTAGCTATGTTATGTAGATCCTTCACTTATATATCTTGACGTATTTGTGTCGAAAAAATGTGATTAGAGATGGGTGCATTGTCGAAATCCCTATAGATGTACTAAATAGAAAACAAAAAATGAATTTACCTTTCCATATACTTACACATACTCGTAGATACATACCCGTCTACAAGTTCATGTAATAGAGCCAACAAGTGCAGCGTATTGCTTCATGAATAAGTTCCAAAAGTGACTAGTATTTGAACCGGAACTTGAATATGAAAGTTCGCAATTGAACACTGTGATTGTATTTAGAAAATTATACTTTCCAGTTTTGACTGAGTTAGTTAAGTGAAAGTCAGTTGAAATAATGAGAGCGAAGGTGATCACTTGCGCGCAAAAAGGTTTGAAAAGCTGGGATTGAACTTGACGGAACTGTGCTCATAATTAAAACGTTACAAAAGCATGTATGCTCCGATTTAACCATCTTTTTAATGCTACGAGAAAACTTCCTCTTAATCAAAACCAAAATGTTCCTCCTATATATGTCCCAAATGTATTTTACATGCTAATTTATACAATTTCTCCAGGTTCTTTATGATAGGGACACAGGTAAAAGCAGAGGATTTGCATTTGTGACAATGAGTACTCTTGAAGATTGCAAGACAGTCGTCGAAAATCTAGATGGAAGAGTAAGAGATCACTTCAATTTGCTTTCGTGAATCGATGTTGAATATTACAAAATATTTCTGACGTTGAGCTTATCTGAGGCTATGCACTAAAGCATGATTTACTGATTTCAGGAGTATGGTGGCAGAACCCTAAGGGTGAATTTCTCGGATAAGCCTAAACCAAAAGAACCACTTTACCCCGAAACAGAACACAAACTCTTTGTTGGTAATTTGGCGTGGTCAGTCTCATCTGAAAGTTTAGCGCAAGCATTTCAAGAATATGGAACTGTTGTTGGTGCTAGGGTACTGTATGATGGTGAGACCGGG</genome_strand>
        <mrna_strand>TCCGATCAAAAATTGAAATTCCGGCGAAATCATGGCGGCCGCAGCTGCCACAGCAATAGCTTCTTCGTTTTCCAGTCTTCATTCTATACGTACTAAATCAAATTTGACTAATTCCGATCATCTACTTAAAATTTCATCAGCTAGAACTCCAAATCTAACTTTAATTTCATCGTCGGTAAGTGAACTGACGTCGATTTACAAGAAGTGGAGGGTATTGCCCAGGCTGTCAGCTGCGGTGGCGCAAGAGGAGGCGGAAGCGGCGGTGACGGAGGAGGAGGTGCCGGCGCCGGCGGTGGATGAGGAGGAGAAGGTAGGAGAGGGTTCCGATGGGAGTAGTGAAAGTGAAGGTGTTAATACTAAGCTTTATTTTGGGAATTTGCCGTATCTTTGTGATAGTGCACAACTTGCTGGGATTGTTCAAGACTATGCTAGTCCTGAACTTGTTGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTTATGATAGGGACACAGGTAAAAGCAGAGGATTTGCATTTGTGACAATGAGTACTCTTGAAGATTGCAAGACAGTCGTCGAAAATCTAGATGGAAGA...............................................................................................................GAGTATGGTGGCAGAACCCTAAGGGTGAATTTCTCGGATAAGCCTAAACCAAAAGAACCACTTTACCCCGAAACAGAACACAAACTCTTTGTTGGTAATTTGGCGTGGTCAGTCTCATCTGAAAGTTTAGCGCAAGCATTTCAAGAATATGGAACTGTTGTTGGTGCTAGGGTACTGTATGATGGTGAGACCGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U312369" ref_strand="+" ref_description="SGN-U312369        Tomato 200607 #1 [12 ESTs aligned] arabidopsis/peptide: | Symbol: None | Bet v I allergen family protein, similar to major pollen allergen Bet v 1 GB:CAA96544 GI:1321726 from (Betula pendula); contains Pfam profile PF00407: Pathogenesis-related protein Bet v I family | chr1:8500466-8501504 REVERSE | Aliases: T23E23.28, T23E23_28(evalue: 8e-09, score=57.8) genbank/nr: similar(evalue: 4e-86, score=320)">
      <seq>attaatttcacttcttatatatcctttattttattactacaagtttggaaaaatatttaacattatgggtgtcactacctatacacatgaagacacaagcacagtgtctcctaataggttgttcaaagctttggttattgatggtgacaatcttattccaaaattgatgccaaatgttaagaatgttgagactgagggagatggaagcattaagaagataaattttgttgaaggtggtccaataaagtatttgaagcacaagattcatgcaattgatgacaagaatttggtaacaaaatattcacttatagaaggtgatgttcttggagacaaattggaatcaattacccatgatgtcaaatttgaacctgctggaaatggaggttgtgtttgcaagactaaaactgagtaccacacaaaaggtgactatgttttaaaggatgaagaacacaatgaaggaaaaaaacatgccatggaacttttcaaggctgtcgaagattacctcctcgctaatccttccatctacgcttaaatgatgaaaaaagaatcagacttgcacgtatctgaattgaagagtcatactaaggggtttgagttttagtagtttttatacttattttgttgttgttgttgtagagtgtgtgttctttccaatttctatataataataatgtcatggaaaagaactttgaataaaataagacaagctttagttatgaaaagtttgtactaaacataaaatgggttgttcaaatatatatgatatgattagattttttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="17777" stop="15770"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17477" g_stop="17245" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17244" i_stop="16617" i_length="628">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16616" g_stop="16075" g_length="542"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="776" r_length="543" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="780" polyA_stop="812"/>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-U312369" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>775</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U312369" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17477" e_stop="17245"/>
          <exon e_start="16616" e_stop="16075"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAATTTCACTTCTTATATATCCTTTATTTTATTACTACAAGTTTGGAAAAATATTTAACATTATGGGTGTCACTACCTATACACATGAAGACACAAGCACAGTGTCTCCTAATAGGTTGTTCAAAGCTTTGGTTATTGATGGTGACAATCTTATTCCAAAATTGATGCCAAATGTTAAGAATGTTGAGACTGAGGGAGATGGAAGCATTAAGAAGATAAATTTTGTTGAAGGTAATATAATTAGTTTTTACATTTATCATTTTTACTACCTTGTTAATATAAATGAACGATCTAATCTGATTATGTAAATATCTTTTACATATCGTTAATGCATATGACTAAATAAATTCTCAGGTTTTTGAGGTTCAAAGCTGAACTGTTAGGTGTTTAAGTCTGGACTATCATTAAATTTCTCGAAACACGTTTGAACTATCAGTCAATATCACTACTGTTCAGATAAGAAAAGTGAACAATTGATAATTTAAGTGTGTTTTGATATGTATGTGAGTTTTCTACGTAGACTATCAAATGTTTCTCCAAACACATTCGAACTATTTTTTCTACCTAAAATATCACTATTGTTCAGATAAGAAAACTGAACAACTAATAGTTTAAGTGTATTTTGATAAATATTTGGTGATAGTTCATATATGAAATTCACACATTTGATAATTTAGATATAAAACTCACTACAAGATATAAAACTCAAACTCAAAAAATCAAAATACTTTTTTAATGTGTTTTTAATAGAATACAATAGATTTCAACTCGTTCATTTAACATATCTATAGATATTCTTCGAAATGTTTACATCGATTATATTACGAAACTTATATATTATTTTTGTTAATATCATCAGGTGGTCCAATAAAGTATTTGAAGCACAAGATTCATGCAATTGATGACAAGAATTTGGTAACAAAATATTCACTTATAGAAGGTGATGTTCTTGGAGACAAATTGGAATCAATTACCCATGATGTCAAATTTGAACCTGCTGGAAATGGAGGTTGTGTTTGCAAGACTAAAACTGAGTACCACACAAAAGGTGACTATGTTTTAAAGGATGAAGAACACAATGAAGGAAAAAAACATGCCATGGAACTTTTCAAGGCTGTCGAAGATTACCTCCTCGCTAATCCTTCCATCTACGCTTAAATGATGAAAAAAGAATCAGACTTGCACGTATCTGAATTGAAGAGTCATACTAAGGGGTTTGAGTTTTAGTAGTTTTTATACTTATTTTGTTGTTGTTGTTGTAGAGTGTGTGTTCTTTCCAATTTCTATATAATAATAATGTCATGG-AAAGAACTTTGAATAAGATAAGACAAGCTTTAGTTATGAAAAGTTTGTACTAAACATAAAATGTGTTGTTCAAATATATATGATATGATTAGATTT</genome_strand>
        <mrna_strand>ATTAATTTCACTTCTTATATATCCTTTATTTTATTACTACAAGTTTGGAAAAATATTTAACATTATGGGTGTCACTACCTATACACATGAAGACACAAGCACAGTGTCTCCTAATAGGTTGTTCAAAGCTTTGGTTATTGATGGTGACAATCTTATTCCAAAATTGATGCCAAATGTTAAGAATGTTGAGACTGAGGGAGATGGAAGCATTAAGAAGATAAATTTTGTTGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTCCAATAAAGTATTTGAAGCACAAGATTCATGCAATTGATGACAAGAATTTGGTAACAAAATATTCACTTATAGAAGGTGATGTTCTTGGAGACAAATTGGAATCAATTACCCATGATGTCAAATTTGAACCTGCTGGAAATGGAGGTTGTGTTTGCAAGACTAAAACTGAGTACCACACAAAAGGTGACTATGTTTTAAAGGATGAAGAACACAATGAAGGAAAAAAACATGCCATGGAACTTTTCAAGGCTGTCGAAGATTACCTCCTCGCTAATCCTTCCATCTACGCTTAAATGATGAAAAAAGAATCAGACTTGCACGTATCTGAATTGAAGAGTCATACTAAGGGGTTTGAGTTTTAGTAGTTTTTATACTTATTTTGTTGTTGTTGTTGTAGAGTGTGTGTTCTTTCCAATTTCTATATAATAATAATGTCATGGAAAAGAACTTTGAATAAAATAAGACAAGCTTTAGTTATGAAAAGTTTGTACTAAACATAAAATGGGTTGTTCAAATATATATGATATGATTAGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U315737" ref_strand="+" ref_description="SGN-U315737        Tomato 200607 #1 [36 ESTs aligned] arabidopsis/peptide: | Symbol: None | Bet v I allergen family protein, similar to major pollen allergen Bet v 1 GB:CAA96544 GI:1321726 from (Betula pendula); contains Pfam profile PF00407: Pathogenesis-related protein Bet v I family | chr1:8500466-8501504 REVERSE | Aliases: T23E23.28, T23E23_28(evalue: 2e-05, score=46.2) genbank/nr: pSTH-2(evalue: 4e-83, score=310)">
      <seq>caacattttatatatcctctttttttttgtctaataacatcatgggtgtcactagctatacacatgaaaccacaacaccagttgcccctactaggttgttcaaagctttggttgttgattctgataatcttattcctaagttgatgccacaagttaaaaatattgaggctgagggagatggaagtatcaaaaagatgaactttgttgaaggttcaccaatcaagtacttgaagcacaagattcatgttgttgatgacaagaatttggtgaccaaatattcaatgattgaaggagatgttcttggagacaaacttgagtcaatttcctatgacctaaaatttgaagctcatggaaatggaggatgtgtttgcaagtctataactgagtatcacacaaaaggtgattatgtgttgaaggatgaagaacataatgaaggcaaaaaacaagccatggaacttttcaagattgttgaagcatacctcctcgagaatccttctgtctacgcttaagtgatgaaataagaatcaggtccacacgtgttatataacgtgtttgtgacattatataataaagtatataccctcattaaaaagttaaaaatcttttaaatgagatttatggtttgagttttcattaatgttatagtgctttttgttgagttgtgtgttctttttccaagtttatcattgggaattaagaactcttaataatgtagcaacctttaattttgcttatcaaatacttaatagtaaaaaaatattttacttttcgaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="19232" stop="20919"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19532" g_stop="19741" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19742" i_stop="20048" i_length="307">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20049" g_stop="20618" g_length="570"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="780" r_length="570" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="781" polyA_stop="792"/>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-U315737" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>780</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U315737" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19532" e_stop="19741"/>
          <exon e_start="20049" e_stop="20618"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACATTTTATATATCCTCTTTTTTTTTGTCTAATAACATCATGGGTGTCACTAGCTATACACATGAAACCACAACACCAGTTGCCCCTACTAGGTTGTTCAAAGCTTTGGTTGTTGATTCTGATAATCTTATTCCTAAGTTGATGCCACAAGTTAAAAATATTGAGGCTGAGGGAGATGGAAGTATCAAAAAGATGAACTTTGTTGAAGGTAATATAATAATCGATCTGATTGTGTAAATATTTTTTGCATCGTTAGTGGATAGGACTAATTAAATTATATACTTGAAATATTAGACGTGTGAGTTTTCTATCAAAAATTCTATTGCATTGATCAAAATGTTTAACTTTTTAAATTTTCCAAGAAAATACTATATTTTCACAAGTGAGGTCTGGGGACTGGGGGAGCAGAGGCGGAGTTGTATAGACCATAACCTGTCTTTTGTGAAGTAAAGAGGTTATTTCTGATAGACCTACAGCTCGTTAAGTTCATTTTTTTTTTTTTGGAATAATTGTAGGTTCACCAATCAAGTACTTGAAGCACAAGATTCATGTTGTTGATGACAAGAATTTGGTGACCAAATATTCAATGATTGAAGGAGATGTTCTTGGAGACAAACTTGAGTCAATTTCCTATGACCTAAAATTTGAAGCTCATGGAAATGGAGGATGTGTTTGCAAGTCTATAACTGAGTATCACACAAAAGGTGATTATGTGTTGAAGGATGAAGAACATAATGAAGGCAAAAAACAAGCCATGGAACTTTTCAAGATTGTTGAAGCATACCTCCTCGAGAATCCTTCTGTCTACGCTTAAGTGATGAAATAAGAATCAGGTCCACACGTGTTATATAACGTGTTTGTGACATTATATAATAAAGTATATACCCTCATTAAAAAGTTAAAAATCTTTTAAATGAGATTTATGGTTTGAGTTTTCATTAATGTTATAGTGCTTTTTGTTGAGTTGTGTGTTCTTTTTCCAAGTTTATCATTGGGAATTAAGAACTCTTAATAATGTAGCAACCTTTAATTTTGCTTATCAAATACTTAATAGTAAAAAAATATTTTACTTTTCGAAAATAAAA</genome_strand>
        <mrna_strand>CAACATTTTATATATCCTCTTTTTTTTTGTCTAATAACATCATGGGTGTCACTAGCTATACACATGAAACCACAACACCAGTTGCCCCTACTAGGTTGTTCAAAGCTTTGGTTGTTGATTCTGATAATCTTATTCCTAAGTTGATGCCACAAGTTAAAAATATTGAGGCTGAGGGAGATGGAAGTATCAAAAAGATGAACTTTGTTGAAG...................................................................................................................................................................................................................................................................................................................GTTCACCAATCAAGTACTTGAAGCACAAGATTCATGTTGTTGATGACAAGAATTTGGTGACCAAATATTCAATGATTGAAGGAGATGTTCTTGGAGACAAACTTGAGTCAATTTCCTATGACCTAAAATTTGAAGCTCATGGAAATGGAGGATGTGTTTGCAAGTCTATAACTGAGTATCACACAAAAGGTGATTATGTGTTGAAGGATGAAGAACATAATGAAGGCAAAAAACAAGCCATGGAACTTTTCAAGATTGTTGAAGCATACCTCCTCGAGAATCCTTCTGTCTACGCTTAAGTGATGAAATAAGAATCAGGTCCACACGTGTTATATAACGTGTTTGTGACATTATATAATAAAGTATATACCCTCATTAAAAAGTTAAAAATCTTTTAAATGAGATTTATGGTTTGAGTTTTCATTAATGTTATAGTGCTTTTTGTTGAGTTGTGTGTTCTTTTTCCAAGTTTATCATTGGGAATTAAGAACTCTTAATAATGTAGCAACCTTTAATTTTGCTTATCAAATACTTAATAGTAAAAAAATATTTTACTTTTCGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U319860" ref_strand="+" ref_description="SGN-U319860        Tomato 200607 #1 [3 ESTs aligned]">
      <seq>cgagcttagtaatgtgggcttgtaacccaaatgggggcattaatgtggtggaatgttgggctgtaccagatggttgggcttggtgggctaatttctgacttgccctatccaagcttagagttggatcatgtggcccaattgaagaaatggactacttgattcgtaaagtggggcggaatgcgtgaggctggtttcacagagcaacgataagtttcgctctaagcggtggaaggataacgagtcggtgttctctgagtccagtaacgcctgatgggttgctccaattaaaccaccattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="20594" stop="21494"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20894" g_stop="21194" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="300" r_length="300" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-U319860" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>301</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U319860" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20894" e_stop="21194"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGCTTAGTAATGTGGGCTTGTAACCCAAATGGGGGCATTAATGTGGTGGAATGTTGGGCTGTACCAGATGGTTGGGCTTGGTGGGCTAATTTCTGACTTGCCCTATCCAAGCTTAGAGTTGGATCATGTGGCCCAATTGAAGAAATGGACTACTTGATTCGTAAAGTGGGGCGGAATGCGTGAGGCTGGTTTCACAGAGCAACGATAAGTTTCCGCTCTAAGCGGTGGAAGGATAACGAGTCGGTGTTCTCTGAGTCCAGTAACGCCTGATGGGTTGCTCCAATTAAACCACCATTTTT</genome_strand>
        <mrna_strand>CGAGCTTAGTAATGTGGGCTTGTAACCCAAATGGGGGCATTAATGTGGTGGAATGTTGGGCTGTACCAGATGGTTGGGCTTGGTGGGCTAATTTCTGACTTGCCCTATCCAAGCTTAGAGTTGGATCATGTGGCCCAATTGAAGAAATGGACTACTTGATTCGTAAAGTGGGGCGGAATGCGTGAGGCTGGTTTCACAGAGCAACGATAAGTTT-CGCTCTAAGCGGTGGAAGGATAACGAGTCGGTGTTCTCTGAGTCCAGTAACGCCTGATGGGTTGCTCCAATTAAACCACCATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U341660" ref_strand="+" ref_description="SGN-U341660        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>gttgggttgacccagatggttgggttcggtaggcttatagtctggcctgccctctccaagcatggagttggatcacgtggcttagtcgaaagacctgggttgcttgattcctaaagtggggtggactgcgtgaggctggtttcacagagcaacgaacagcttccgctctgtgcagtggaaggataacgggtcagtgctcagcgagtccagttaacgccctgatgggctgctccaactaaaccaccacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="22743" stop="23590"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23043" g_stop="23290" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="250" r_length="250" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-U341660" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>248</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U341660" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23043" e_stop="23290"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGGGTTGACCCAGATGGTTGGGTTCGGTAGGCTTATAGTCTGGCCTGCCCTCTCCAAGCATGGAGTTGGATCACGTGGCTTAGTCGAAAGACC-AGGTTGCTTGATTCCTAAAGTGGGGTGGACTGCGTGAGGCTGGTTTCACAGAGCAACGAACAGCTTCCGCTCTGTGCAGTGGAAGGATAACGGGTCAGTGCTCAGCGAGTCCAGTTAACG-CCTGATGGGCTGCTCCAACTAAACCACCACTTT</genome_strand>
        <mrna_strand>GTTGGGTTGACCCAGATGGTTGGGTTCGGTAGGCTTATAGTCTGGCCTGCCCTCTCCAAGCATGGAGTTGGATCACGTGGCTTAGTCGAAAGACCTGGGTTGCTTGATTCCTAAAGTGGGGTGGACTGCGTGAGGCTGGTTTCACAGAGCAACGAACAGCTTCCGCTCTGTGCAGTGGAAGGATAACGGGTCAGTGCTCAGCGAGTCCAGTTAACGCCCTGATGGGCTGCTCCAACTAAACCACCACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U324420" ref_strand="+" ref_description="SGN-U324420        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr2:14104509-14105788 FORWARD | Aliases: F25I18.1, F25I18_1(evalue: 4e-17, score=85.9) genbank/nr: gi|18403223|ref|NP_565762.1| expressed protein [Arabidopsis thaliana] gi|15010592|gb|AAK73955.1| F25I18.1/F25I18.1 [Arabidopsis thaliana] gi|20196850|gb|AAB80643.2| Expressed protein [Arabidopsis thaliana] gi|20196853|gb|AAM14805.1| Expressed protein [Arabidopsis thaliana] gi|20453327|gb|AAM19902.1| At2g33250/F25I18.1 [Arabidopsis thaliana](evalue: 3e-15, score=85.9)">
      <seq>gccaatggaatggactgaagaccaccatcaataggggtgatggtggtcttcttcatcttcacttacccttaaaccccagcccttcacctcttcttttctttactcaaaaacccatttctttaaaccctctaaatccactctcttctcatcttctgctgcagaagcagcagcagccccttcacatctgctgcagtaggccttctagtaagtgggactcaaatgctgagtccatcaagaaccagaattttaataatcttgaagatgaggaagaggagcttgatgaggaggaattcttggaacaaggagctcaattttttgctgagtatattgaaagtatttggatctttaaggtcttctgctcctacggttttgtgttaataccaattctaatagtattgatttctactggaggagctaaagcttttgctatggcattcgcccttcccattggacagtctacgcttttctttgcaatccaaaagatactggacgtgatacaaaacaaaccaacgcgcaagagtacagctaagaagagacaacgcgctgctcccaactcaagcaagacaaacttttggagaagaggaggaagctccaagacacgaaagagaaagacgggctatcaatcatgggtgtccaacagtgacgtttcagctagtaaggatgaccgagaggtatctagattcggagggtgggatgaacttgatcaagaaatgcaatctagcaaaagttcagataaatcatcagctgaaacagcaaaaaatacctgtgaaaaaggtaagttaagtagaccagaagcgactagcgatacgccccttttgttaagattattgatttccatgttcccattcttggcttcatggactaaaatgctataaatagacagcttttgttgtctatttgagttgctccagcgcagaggcggagcttgatttttgagtctgagttctcgatgtagaacacatagcttattggattctcgataaactatatatgtatacatattaagtggttttttaaccacacatacagagttcgagcctagaattttgagtcaatgagttctggatgtagaaaacatagcttattgggttctcgataaactgtatgtttacataattaagtggctttttaaccaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="26274" stop="23143"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25974" g_stop="25625" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="350" r_length="350" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25624" i_stop="24234" i_length="1391">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24233" g_stop="23449" g_length="785"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="1135" r_length="785" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1136" polyA_stop="1151"/>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-U324420" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1135</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U324420" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25974" e_stop="25625"/>
          <exon e_start="24233" e_stop="23449"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCAATGGAATGGACTGAAGACCACCATCAATAGGGGTGATGGTGGTCTTCTTCATCTTCACTTACCCTTAAACCCCAGCCCTTCACCTCTTCTTTTCTTTACTCAAAAACCCATTTCTTTAAACCCTCTAAATCCACTCTCTTCTCATCTTCTGCTGCAGAAGCAGCAGCAGCCCCTTCACATCTGCTGCAGTAGGCCTTCTAGTAAGTGGGACTCAAATGCTGAGTCCATCAAGAACCAGAATTTTAATAATCTTGAAGATGAGGAAGAGGAGCTTGATGAGGAGGAATTCTTGGAACAAGGAGCTCAATTTTTTGCTGAGTATATTGAAAGTATTTGGATCTTTAAGGTAGTGGCTTTTCTTGCTTCTCCCCTTTTATTTCTTGAATTATAAACTTGTGTTCCTGTTTTTTTTTCCTGTGAAGTTTGGTTTCTTTTTGGCATTTTGGGTACTTGAGTTTTGGGTTTTCTACTTAAAGTTTGGATTATTTTTTTTGCATGGATATGGAGTTTTGACATTTTGGGGTACTTGAATCTTGGGTTTTCAGCTTAAAGTTTGGATTTTTTTGCATGGATATGAGGTTATGACATTTTGGGGTACTTGAATTTTGAGTTTTGAGCTTAAAGTTTGGATTTTTTTGCATGGATGTGGGGTTTTGACATTTTGGGGTACTTGAATTTTGGGTTTTCAGCTTAAAGTTTGGATTTTTTTGGCATGGATATGGAGTTTTGACATTTTTAGGTACTTCTTGGATTGAAGGAAGATGAGGTTTTTGTGGAATCTGTACTTTTAACCTGAATCCATTTTATTTTTCTTTGAGAAAGATGGAAGTATGTTGTTATTTTGTTTTGTATTTTTTTCATGAAATAAGATGTTTAGTGTAAAGTGATGCCTTTAGGATTATGCTGAGACTGAACCAGATTGCTTTTGTGTATTTAGATACATTAGCTTGATTTAGAATTAAGTGAATTTAGTATAATGTTTTCTTGAAATGATAGGTTGTGTTCTTTTGAGTTCAAATTGTTGAAGTACATGATTCTAACTTAGTGAATTTAGTATAGAACAGTTGATTGTTCCAAGATTTCCGTTATGAAACAACGTGTAGACTGTACGTGGCCTTACCCCCCCTACTTTGTGAAGGTAGAGAGGTTGTTTCTGATAGGCTCCAAAGTAACTTCCGTTGAAGTGAATCAGTATCAAAACTCAAGAACTTCAACATTTTACTAGTTTCCTATGCTAATTATTCTTCTGAGATCTTCCATCAGTTTCAGACGTTCTTCCTGTATATCGTTTGGTTGAGTATTACCATTTGTCCTCAAACGTCCTCCCGCCCAATGGCCCAAGCCTTTCTTCCAGTCTTATGCCCAATCAAATCTTCCAAAATCCGAAAGTTTCCCCTATCCACTGTCCATGTCCGATATCCTGGCTCCACCGCAACTTATGAGTATAAATCGTGCATTATCTAACTGCAGTACTACTAACCAGGATCTCGAGGCTTTGGACTTGAAAGGCTCTTTGATTCTTGATAAATCTGTTAATATAATCATTTAAGAGCTATGCTCGATGTGTTCGTCTATACTTTCAATAGCTTTCTTTTCACTACATTTTCGACTGACTTCCTAATTATAGCTATCTAACTATTGACTAGTCTTGCTACAACGTTCTCGAGTAGAAATTGAAACGTAGGTAAGATGATTTTCGTCAAACAACTTACAAGTTATCGTTCTTGGCCAGTGCAGGTCTTCTGCTCCTACGGTTTTGTGTTAATACCAATTCTAATAGTATTGATTTCTACTGGAGGAGCTAAAGCTTTTGCTATGGCATTCGCCCTTCCCATTGGACAGTCTACGCTTTTCTTTGCAATCCAAAAGATACTGGACGTGATACAAAACAAACCAACGCGCAAGAGTACAGCTAAGAAGAGACAACGCGCTGCTCCCAACTCAAGCAAGACAAACTTTTGGAGAAGAGGAGGAAGCTCCAAGACACGAAAGAGAAAGACGGGCTATCAATCATGGGTGTCCAACAGTGACGTTTCAGCTAGTAAGGATGACCGAGAGGTATCTAGATTCGGAGGGTGGGATGAACTTGATCAAGAAATGCAATCTAGCAAAAGTTCAGATAAATCATCAGCTGAAACAGC-AAAAATACCTGTGGAAAAAGGTAAGTTAAGTAGACCAGAAGCGACTAGCGATACGCCCCTTTTGTTAAGATTATTGATTTCCATGTTCCCATTCTTGGCTTCATGGACTAAAATGCTATAAATAGACAGCTTTTGTTGTCTATTTGAGTTGCTCCAGCGCAGAGGCGGAGCTTGATTTTTGAGTCTGAGTTCTCGATGTAGAACACATAGCTTATTGGATTCTCGATAAACTATATATGTATACATATTAAGTGGTTTTTTAACCACACATACAGAGTTCGAGCCTAGAATTTTGAGTCAATGAGTTCTGGATGTAGAAAACATAGCTTATTGGGTTCTCGATAAACTGTATGTTTACATAATTAAGTGGCTTTTTAACCA</genome_strand>
        <mrna_strand>GCCAATGGAATGGACTGAAGACCACCATCAATAGGGGTGATGGTGGTCTTCTTCATCTTCACTTACCCTTAAACCCCAGCCCTTCACCTCTTCTTTTCTTTACTCAAAAACCCATTTCTTTAAACCCTCTAAATCCACTCTCTTCTCATCTTCTGCTGCAGAAGCAGCAGCAGCCCCTTCACATCTGCTGCAGTAGGCCTTCTAGTAAGTGGGACTCAAATGCTGAGTCCATCAAGAACCAGAATTTTAATAATCTTGAAGATGAGGAAGAGGAGCTTGATGAGGAGGAATTCTTGGAACAAGGAGCTCAATTTTTTGCTGAGTATATTGAAAGTATTTGGATCTTTAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTCTGCTCCTACGGTTTTGTGTTAATACCAATTCTAATAGTATTGATTTCTACTGGAGGAGCTAAAGCTTTTGCTATGGCATTCGCCCTTCCCATTGGACAGTCTACGCTTTTCTTTGCAATCCAAAAGATACTGGACGTGATACAAAACAAACCAACGCGCAAGAGTACAGCTAAGAAGAGACAACGCGCTGCTCCCAACTCAAGCAAGACAAACTTTTGGAGAAGAGGAGGAAGCTCCAAGACACGAAAGAGAAAGACGGGCTATCAATCATGGGTGTCCAACAGTGACGTTTCAGCTAGTAAGGATGACCGAGAGGTATCTAGATTCGGAGGGTGGGATGAACTTGATCAAGAAATGCAATCTAGCAAAAGTTCAGATAAATCATCAGCTGAAACAGCAAAAAATACCTGT-GAAAAAGGTAAGTTAAGTAGACCAGAAGCGACTAGCGATACGCCCCTTTTGTTAAGATTATTGATTTCCATGTTCCCATTCTTGGCTTCATGGACTAAAATGCTATAAATAGACAGCTTTTGTTGTCTATTTGAGTTGCTCCAGCGCAGAGGCGGAGCTTGATTTTTGAGTCTGAGTTCTCGATGTAGAACACATAGCTTATTGGATTCTCGATAAACTATATATGTATACATATTAAGTGGTTTTTTAACCACACATACAGAGTTCGAGCCTAGAATTTTGAGTCAATGAGTTCTGGATGTAGAAAACATAGCTTATTGGGTTCTCGATAAACTGTATGTTTACATAATTAAGTGGCTTTTTAACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U319700" ref_strand="+" ref_description="SGN-U319700        Tomato 200607 #1 [13 ESTs aligned] arabidopsis/peptide: AT1G04140.1 | Symbol: None | transducin family protein / WD-40 repeat family protein, contains 4 WD-40 repeats (PF00400); similar to neural cell adhesion molecule 2, large isoform precursor gb:M76710 from Xenopus laevis, and beta transducin from S. cerevisiae gb:Q05946. ESTs gb:N65081 gb:Z30910, gb:Z34190, gb:Z34611, gb:R30101, gb:H36304, and gb:N65606 come from | chr1:1075544-1080629 REVERSE | Aliases: F20D22.9, F20D22_9 (evalue: 2e-12, score=69.3) genbank/nr: gi|50907067|ref|XP_465022.1| transducin-like [Oryza sativa (japonica cultivar-group)] >gi|47847956|dbj|BAD21745.1| transducin-like [Oryza sativa (japonica cultivar-group)] >gi|47847948|dbj|BAD21738.1| transducin-like [Oryza sativa (japonica cultivar-group)] (evalue: 2e-11, score=72.4)">
      <seq>ttaacgttgcttgtttccatcctttggttggtggtggcctagtatatggaactaaggaaggaaaattgaggatcctgcaatttgataaatcaaatggtttggactctacagtatcctgttcccctgatgaagacatgctcgaggtcccaacatatgctttagaaggctagaaactattgatgtcagcagatggttgtagttgtaaaactcggctgtaacgaaaatacacatatcaggacaatgactggtggcttcaaagttgagtgtgttgctgatggtttgctgtatagttggttgaatgtgtgccactggtggcaaagagaggatttttacttccggttgtgtacttacgttagacattacagactgactgatctttttcgtgctacaagagagtgcaaaaatcgttgtgcttaaggtggcttcaggagagctgagaaaatactaacatgatagaagaggaaatgtcgtcgaaaagttgggattgctgtttctgcaaagtttgacatttcgttgtattgatatatggcttcaaatgtacatcagaaattgaaatagactagttggttttctttcaagtgaaggttcaagaagaaaaaaaagaaaatttccagccacaaacatgcaagtgtttatatattatgtattcaacattttgtactttttaatggtttctgttttgtagactaatggtaaaaaaaaaaaaaaaaaaaaaaaaaactcgaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="28919" stop="26198"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28619" g_stop="28564" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28563" i_stop="28456" i_length="108">
            <donor d_prob="0.793" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28455" g_stop="28369" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="143" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28368" i_stop="27649" i_length="720">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27648" g_stop="27581" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="211" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27580" i_stop="27002" i_length="579">
            <donor d_prob="0.705" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27001" g_stop="26498" g_length="504"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="715" r_length="504" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-U319700" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U319700" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28619" e_stop="28564"/>
          <exon e_start="28455" e_stop="28369"/>
          <exon e_start="27648" e_stop="27581"/>
          <exon e_start="27001" e_stop="26498"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAACGTTGCTTGTTTCCATCCTTTGGTTGGTGGTGGCCTAGTATATGGAACTAAGGTAGTTATGCAGACATTGTATGAGTTTCTCATTTTTTGGTTACAACTATAAAATTGTTCATATTCTCAAAAGTATTCGTCTTCTTTTTTTTAACATTAAATTGTGCAGGAAGGAAAATTGAGGATCCTGCAATTTGATAAATCAAATGGTTTGGACTCTACAGTATCCTGTTCCCCTGATGAAGACATGCTCGAGGTAGTCTAAAGCTTTTTAAAGTTTATCTTAATTCTGGTTGGACTTCTATAAATCATGACTTTAGTAGAGCAACAACTTGATCCTGCTGCACCAATTGAATTTTTTTTGGGGTGGGGGGGTGGGGTGGGGTGGGGTGGGGGATGATTGGTTGGTAGGTACAGTCAGGAGTATTTGATATCATTAGTTCTCTTTCTTAATATACTTTAGTTTAAGTTGTTGGAAGGTGTGGGGATTTGAAGATCAGTCGGAAACATGACTGATCACATACACTCTTAACAAGCATTAAAGGTAACAGACAGAAAATGAAATGGGGAAGAATAGTAGTTCAAAGATTGAGCTAGCTTTGTATGAATCAAGGGCGGAAAGAGAGTATCCGGATGTGGACACTCCAGTTAATTGACAAGTACCAACTCCTCTAGTGATGTGGTTGCACCTTTGGGAACCGAAGCCAGTCATCAAGTTTATTTGCATAATTTTGTGTCAACTAGAACTGTAATACAACAAAAACAACATGCCCAGTGCAATTCTACAAGCGAGGTCTGCGATGTATGCAAACCTTACTCCTACCTTACGGGTTAGAGAGGTTGTTTCTTATAGACAACTAGAACTAAAATCTTTAACCAAAAAAATAATAATTGTCCATGACTGATGCCCTGGGGGGTTTTGGTGTGGGATATTCATTTCTGCTAATGACACTGTTATTTTGCAAATGTGATGCAGGTCCCAACATATGCTTTAGAAGGCTAGAAACTATTGATGTCAGCAGATGGTTGTAGTTGTAAAACTCGGTAATTATCTTGTTTCTTTTCCATGGTTCTGTCAATAGTTGCCATATTGATGCTTCTGGCTTCTTTCCTATGCTTTCACATACATCCTTATGAGTTGAAAGCCTGCTTCTTGAAACCGATTTTGGATGAAGGGCCCTTATGGATTGGGGGTGGTTGACTTAGATTTAGATATTTGTTCGTTGATCTACTTGATAGGAGGAAACATATGACTAAATAGTACATGATTTATGTCTATTTTATTTTCAATCTATGGACCAATTTGTGTTTTGACATAACCCTGAGATTTGTCGAAACAACTATCTATAATAGAAAATACAACAAAGAACAGTTTGGAGGGAAGTACCAAACTGATGGAACTCGAAAGTCAAATTCACCCGGGAAAGTTGATTCAAGTGCCACCGTGTTGCATGAATTCCAATTCTTCATTTGTTTTAATTTCAGTCCTGAGTCATGTTCTGTCATCTTTTATCATCACCGTCAAACCATTTTTTCATGAGAGAGTAGGGTTATACCTCTTGATTATGCTCTTTTGATGTTCCTCTGAAACATTTTGTTTGTCTAACACATCCGATTATTCAGGCTGTAACGAAAATACACATATCAGGACAATGACTGGTGGCTTCAAAGTTGAGTGTGTTGCTGATGGTTTGCTGTATAGTTGGTTGAATGTGTGCCACTGGTGGCAAAGAGAGGATTTTTACTTCCGGTTGTGTACTTACGTTAGACATTACAGACTGACTGATCTTTTTCGTGCTACAAGAGAGTGCAAAAATCGTTGTGCTTAAGGTGGCTTCAGGAGAGCTGAGAAAATACTAACATGATAGAAGAGGAAATGTCGTCGAAAAGTTGGGATTGCTGTTTCTGCAAAGTTTGACATTTCGTTGTATTGATATATGGCTTCAAATGTACATCAGAAATTGAAATAGACTAGTTGGTTTTCTTTCAAGTGAAGGTTCAAGAAGAAAAAAAAGAAAATTTCCAGCCACAAACATGCAAGTGTTTATATATTATGTATTCAACATTTTGTACTTTTTAATGGTTTCTGTTTTGTAGACTAATGGTAAAAGAAAGAAAAAGAAAAGA</genome_strand>
        <mrna_strand>TTAACGTTGCTTGTTTCCATCCTTTGGTTGGTGGTGGCCTAGTATATGGAACTAAG............................................................................................................GAAGGAAAATTGAGGATCCTGCAATTTGATAAATCAAATGGTTTGGACTCTACAGTATCCTGTTCCCCTGATGAAGACATGCTCGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCCAACATATGCTTTAGAAGGCTAGAAACTATTGATGTCAGCAGATGGTTGTAGTTGTAAAACTCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTAACGAAAATACACATATCAGGACAATGACTGGTGGCTTCAAAGTTGAGTGTGTTGCTGATGGTTTGCTGTATAGTTGGTTGAATGTGTGCCACTGGTGGCAAAGAGAGGATTTTTACTTCCGGTTGTGTACTTACGTTAGACATTACAGACTGACTGATCTTTTTCGTGCTACAAGAGAGTGCAAAAATCGTTGTGCTTAAGGTGGCTTCAGGAGAGCTGAGAAAATACTAACATGATAGAAGAGGAAATGTCGTCGAAAAGTTGGGATTGCTGTTTCTGCAAAGTTTGACATTTCGTTGTATTGATATATGGCTTCAAATGTACATCAGAAATTGAAATAGACTAGTTGGTTTTCTTTCAAGTGAAGGTTCAAGAAGAAAAAAAAGAAAATTTCCAGCCACAAACATGCAAGTGTTTATATATTATGTATTCAACATTTTGTACTTTTTAATGGTTTCTGTTTTGTAGACTAATGGTAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U321541" ref_strand="+" ref_description="SGN-U321541        Tomato 200607 #1 [9 ESTs aligned] arabidopsis/peptide: AT1G04140.1 | Symbol: None | transducin family protein / WD-40 repeat family protein, contains 4 WD-40 repeats (PF00400); similar to neural cell adhesion molecule 2, large isoform precursor gb:M76710 from Xenopus laevis, and beta transducin from S. cerevisiae gb:Q05946. ESTs gb:N65081 gb:Z30910, gb:Z34190, gb:Z34611, gb:R30101, gb:H36304, and gb:N65606 come from | chr1:1075544-1080629 REVERSE | Aliases: F20D22.9, F20D22_9 (evalue: 1e-81, score=300) genbank/nr: hypothetical(evalue: 1e-92, score=343)">
      <seq>tcgtgccgaattcggcacgagagcagagtaatgcagacatgggttctgacagtacacagaacagagcagacacttctgcctctgtcagacttctcacttactcaactccttctggccagtatgaacttttattgtcccctgttgagccaactttatctcctgcgcaagaagctcagactagttcctctgttagggatacagagaatgcatctaaccctgttggtgatcctatggagactgatgcgccgactgaggagagaaacaatcagttttttcctttcagtgaccctgcgtactgggacttaccattcttgcaaggatggttgattggccaaagccaagcaggccgacaagcgattcattctgagcatagtggtgccacaaacattgtatcagcttatggtgaagtagaacatcgtcctgcagttccgtccatcatttcaaacggtaatcatccaaggtctggaagatctggttcccggcaccgttcttcacgctctagagtaatacctgttgctggatctggtgatagtgctgttcccattaacattgcacataatgaaagtgattctcaagctcttatgagtcggttccagtcagagatagctacttccctgactgcagcagcttcttctgaattaccttgtactgtgaaactcagagtgtggccttatgatattaaggttccatgtgcgccgcttgatgctgaaaaatgtcgcttaattataccacatgctgtgctctgtagtgaaatgggtgcccacttttcaccatgtggaagatttttagcagcttgtgttgcttgtattagtcatggcatggaagctgatcctggtttccatggacaatttcgtcacgatgctgcaacttcacctaccagacatccaattgcagcccacccggttatgtatgagctacgtatatattccttggaggaggcaaattttggtagggtgcttgcatctcgactaattagagctgctcattgtttgacttcaattcagttctctccaacttctgagcatcttttacttgcctatggacgtcgccatggatcacttctgaaaagtattgtgatcgatggagatacaactctacctgtctacactattcttgaggtctatagagtttcggatatggaacttgtgagagttcttcccagtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="32238" stop="28331"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31936" g_stop="31212" g_length="725"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="748" r_length="725" r_score="0.999"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31211" i_stop="30918" i_length="294">
            <donor d_prob="0.859" d_score="1.00"/>
            <acceptor a_prob="0.723" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30917" g_stop="30723" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="749" r_stop="943" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30722" i_stop="30590" i_length="133">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30589" g_stop="30529" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="944" r_stop="1004" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30528" i_stop="29913" i_length="616">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.833" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29912" g_stop="29799" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1005" r_stop="1118" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29798" i_stop="28678" i_length="1121">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28677" g_stop="28631" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1119" r_stop="1165" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-U321541" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1142</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U321541" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31936" e_stop="31212"/>
          <exon e_start="30917" e_stop="30723"/>
          <exon e_start="30589" e_stop="30529"/>
          <exon e_start="29912" e_stop="29799"/>
          <exon e_start="28677" e_stop="28631"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGTAATGCAGACATGGGTTCTGACAGTACACAGAACAGAGCAGACACTTCTGCCTCTGTCAGACTTCTCACTTACTCAACTCCTTCTGGCCAGTATGAACTTTTATTGTCCCCTGTTGAGCCAACTTTATCTCCTGCGCAAGAAGCTCAGACTAGTTCCTCTGTTAGGGATACAGAGAATGCATCTAACCCTGTTGGTGATCCTATGGAGACTGATGCGCCGACTGAGGAGAGAAACAATCAGTTTTTTCCTTTCAGTGACCCTGCATACTGGGACTTACCATTCTTGCAAGGATGGTTGATTGGCCAAAGCCAAGCAGGCCGACAAGCGATTCATTCTGAGCATAGTGGTGCCACAAACATTGTATCAGCTTATGGTGAAGTAGAACATCGTCCTGCAGTTCCGTCCATCATTTCAAACGGTAATCATCCAAGGTCTGGAAGATCTGGTTCCCGGCACCGTTCTTCACGCTCTAGAGTAATACCTGTTGCTGGATCTGGTGATAGTGCTGTTCCCATTAACATTGCACATAATGAAAGTGATTCTCAAGCTCTTATGAGTCGGTTCCAGTCAGAGATAGCTACTTCCCTGACTGCAGCAGCTTCTTCTGAATTACCTTGTACTGTGAAACTCAGAGTGTGGCCTTATGATATTAAGGTTCCATGTGCGCCGCTTGATGCTGAAAAATGTCGCTTAATTATACCACATGCTGTGCTCTGTAGGTGAGATAATTTCTGTTGTCGCTTAATGATACCACATGCTGTGCTTTGTAGATGAGATAATTTCTATTGTTTCAAAGCTTTGGCTTGAGGTTTTCATATGCCTTCAAGGATAATGGGCTATTTAGCTGTTCTCATGTTGTTCTAGATGCTTGATCTAACTTTCTCTAAGGGATAATTGATGATTCTCCTCTTACCGTTGTTTGACAATTCCTAATTGTTATTTCATTGTAAAACCTGACATCACGTGCAATTAACTGTCCTTAGTGCTTACATGATATACATTATTTATTTCAGTGAAATGGGTGCCCACTTTTCACCATGTGGAAGATTTTTAGCAGCTTGTGTTGCTTGTATTAGTCATGGCATGGAAGCTGATCCTGGTTTCCATGGACAATTTCGTCACGATGCTGCAACTTCACCTACCAGACATCCAATTGCAGCCCACCCGGTTATGTATGAGCTACGTATATATTCCTTGGAGGAGGCAAAGTAAATACCAATTCTAATGTCTTTGTTCCTTTTCCTCTCTGCTTACACTTGCTACTCTTTTTGTCCTTCATTCTTTGTTTCTTTTCATGTCTTTGTTTGGTGGTCATTTGGGAACTCTATTTCACTGTTGCAGTTTTGGTAGGGTGCTTGCATCTCGACTAATTAGAGCTGCTCATTGTTTGACTTCAATTCAGGTTAGTACTCCTCGGGCTCTGCACATATTGGTTTATAATCCTAAATTATGTTTTGTGGTAAGATTTTTTGGTTTTCTGGGAGTATGAACTATAGATGGTTTTCTTGTTGTAGCATTTTTGTCTTAATCCTTTGAGGAAGTAAAAGCAAAATATGAATTGTTAGATGAGAACAAAAATGAAGGGGAAGTGCTCTCTCGTTGTTTTGTTTGGATATGAAGTTTAAAACTGGTTGAGCACTTGTTCAATAAGAAATCCTGGGCACAAATATTGATCCTTCCTTTAGAGAGTAGAATTTCTTTTTTTGTTTAAAGTTCCTATGGGTTGGTGTTGTACCTTATCTTGTTTCGTTCACTTCTATACTTCGTTATATTTGATTTTGCTTACTGTTTAATTATAAATGTAGATCGTTCTGTGCATTGTTATTTGCACAAAAAGAACCTACTTTTTCCTGGATAAAGAAATGTGTCTCAAGTGATTTCACTAGTCAAGAGATGTTCACAATGGCAATTTTATGAAATGCACCTTTAAATTGCAGTAATAATTGCTCTTATAGACTGAAATGTTATCTTTCTGATATGGGAAACTGATTGTTGCTCCACATCTATTGAAAATGCAGTTCTCTCCAACTTCTGAGCATCTTTTACTTGCCTATGGACGTCGCCATGGATCACTTCTGAAAAGTATTGTGATCGATGGAGATACAACTCTACCTGTCTACACTATTCTTGAGGTGAGTACCTGATTATATCCTGGTTTCTTATGGAATGTCAGTTTTTCACCACCACCAAGACTGGGTCATGGTAGCACACTTCTTATTTTAGAACATCGTGAAAATGATTGACATAATTATATGACATACGGAAGTTTCAAAAGTTTGGTTTTAAACCTGATAAGGTTTTTGTTCTGTCACTTACATTTCTAAGAAGTTCTTCAAATATTTCATTTACTCTTTGCAAACATGCAAGGGTTTTTGACTTCTTAACCTCTGAGCCAATCAATCTAGGTTATGGACAGTTGGTTCTAGAGTCTAGTTAATCACAGAGGGTTAGCCATATAATTCCTTCTGACCCATGTTGTGTCACCCATGTTTCACTATGGTATGTCCATGAAGGTTTGATAATTGATATGGCACGAGAATATGTTGTGCACTATTTACAAATTAGATGAATTTAAATTACATTTCACAACTTTGAAGAATTTACCTTTGATTTCATGCTACTATGTTTTTCTTCTCTTTGTACAGAAAACTCAAATTGCCATTTTCTTCTTCACATCAGTCATCGGTCACATGACATGTTGATTGATCTAATTTAATCTCCTGTACCTGTCAAATAGTATGGCATAAATGGATTGTTGAGGCTATTTTCAATTGCAGTGCAACCAAAAACTAATTTTAGAAGCACAACCTCATTTCCTTATTAAAAAGGGAAGAAGAAGTACAACCTCAACTACTATACGTTGGTCCAAAACAAGTTGGGGTGGGCTAGGCAAAGTGATGCAGGATATGTTTAACTTTAGAAAGACTGGATTTAAGTTGATGAAAATGGGGCTAGATAAACTGGAGCTACTATAGCTTGATATGCAAGTGCAGTGACAATGTGTTTAGGACACTTTTAAGGTTGAAGAGGCCCAATTCAATTAGTTTACTAGTATGTCAAAATAATTTCTTTTGTGTTGATGCACTTTGTTTTTGAACTTCATAAAACTTAAAAAGGGAGAATTATGCTTTCGCTCACATTTTACTGAGATTATTTGGTTGAACCTGCAAGAAGAATGAATTTGGTTTGTTCACAATGTCGGTGTATATATTTGTTTTCTCTAGTTAATTCAGATTGTGAGTCTTTGAATCAGGTCTATAGAGTTTCGGATATGGAACTTGTGAGAGTTCTTCCCAGTGC</genome_strand>
        <mrna_strand>CAGAGTAATGCAGACATGGGTTCTGACAGTACACAGAACAGAGCAGACACTTCTGCCTCTGTCAGACTTCTCACTTACTCAACTCCTTCTGGCCAGTATGAACTTTTATTGTCCCCTGTTGAGCCAACTTTATCTCCTGCGCAAGAAGCTCAGACTAGTTCCTCTGTTAGGGATACAGAGAATGCATCTAACCCTGTTGGTGATCCTATGGAGACTGATGCGCCGACTGAGGAGAGAAACAATCAGTTTTTTCCTTTCAGTGACCCTGCGTACTGGGACTTACCATTCTTGCAAGGATGGTTGATTGGCCAAAGCCAAGCAGGCCGACAAGCGATTCATTCTGAGCATAGTGGTGCCACAAACATTGTATCAGCTTATGGTGAAGTAGAACATCGTCCTGCAGTTCCGTCCATCATTTCAAACGGTAATCATCCAAGGTCTGGAAGATCTGGTTCCCGGCACCGTTCTTCACGCTCTAGAGTAATACCTGTTGCTGGATCTGGTGATAGTGCTGTTCCCATTAACATTGCACATAATGAAAGTGATTCTCAAGCTCTTATGAGTCGGTTCCAGTCAGAGATAGCTACTTCCCTGACTGCAGCAGCTTCTTCTGAATTACCTTGTACTGTGAAACTCAGAGTGTGGCCTTATGATATTAAGGTTCCATGTGCGCCGCTTGATGCTGAAAAATGTCGCTTAATTATACCACATGCTGTGCTCTGTAG......................................................................................................................................................................................................................................................................................................TGAAATGGGTGCCCACTTTTCACCATGTGGAAGATTTTTAGCAGCTTGTGTTGCTTGTATTAGTCATGGCATGGAAGCTGATCCTGGTTTCCATGGACAATTTCGTCACGATGCTGCAACTTCACCTACCAGACATCCAATTGCAGCCCACCCGGTTATGTATGAGCTACGTATATATTCCTTGGAGGAGGCAAA.....................................................................................................................................TTTTGGTAGGGTGCTTGCATCTCGACTAATTAGAGCTGCTCATTGTTTGACTTCAATTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTCTCCAACTTCTGAGCATCTTTTACTTGCCTATGGACGTCGCCATGGATCACTTCTGAAAAGTATTGTGATCGATGGAGATACAACTCTACCTGTCTACACTATTCTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTATAGAGTTTCGGATATGGAACTTGTGAGAGTTCTTCCCAGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U321883" ref_strand="+" ref_description="SGN-U321883        Tomato 200607 #1 [8 ESTs aligned] arabidopsis/peptide: AT1G04140.1 | Symbol: None | transducin family protein / WD-40 repeat family protein, contains 4 WD-40 repeats (PF00400); similar to neural cell adhesion molecule 2, large isoform precursor gb:M76710 from Xenopus laevis, and beta transducin from S. cerevisiae gb:Q05946. ESTs gb:N65081 gb:Z30910, gb:Z34190, gb:Z34611, gb:R30101, gb:H36304, and gb:N65606 come from | chr1:1075544-1080629 REVERSE | Aliases: F20D22.9, F20D22_9 (evalue: 1e-44, score=176) genbank/nr: gi|50907067|ref|XP_465022.1| transducin-like [Oryza sativa (japonica cultivar-group)] >gi|47847956|dbj|BAD21745.1| transducin-like [Oryza sativa (japonica cultivar-group)] >gi|47847948|dbj|BAD21738.1| transducin-like [Oryza sativa (japonica cultivar-group)] (evalue: 1e-43, score=179)">
      <seq>ataccttccgtcgtcttcttcatttttctcattttcccctaaatttttttttcttcccattttgcccttctacaagatctctatatcctccatccctctatatttcccggtgtaaattccaccaaatttgagggcattttcggataattttatcgattttttaatatttcgccggaaaagttccattggaaatgacgggaaatattggggcatgaggtattcgtttgtggggatagaattatgaggggatctctttggccggagaattcaagtagtgattcatctacgtcaaatccgattcatgtaccgccgccgccgccgccgccgggatggaattcgcctgctcttccgattgagcaaaaccctaattgcaaaaacagatgtggtaatgtctttcagctactaacgaagagggaggtatctcctcgagctaaacgtagttctaagaagttatgggatgagaattctaaatattgtgctcattcctatgagaagttaaaaagccaagtagcaagagacccgagacggggtcttatatcatgggtagaggcagaatcattgagacatttttcagctaagtattgtccactgttgcctccgcctaggtctacaattgctgcggcattcagtcctgatgggaagacacttgcttctactcatggagatcacacagtaaagataattgactgccaaagcgggaaatgcttgaaggtgttaagtgaacatcgcaggactccttgggtggttcgtttccatccactctactct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="35433" stop="32365"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35133" g_stop="34754" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="380" r_length="380" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34753" i_stop="33946" i_length="808">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33945" g_stop="33784" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="542" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33783" i_stop="33687" i_length="97">
            <donor d_prob="0.770" d_score="1.00"/>
            <acceptor a_prob="0.862" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33686" g_stop="33570" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="659" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33569" i_stop="33269" i_length="301">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33268" g_stop="33184" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="660" r_stop="744" r_length="85" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33183" i_stop="32689" i_length="495">
            <donor d_prob="0.715" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32688" g_stop="32665" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="745" r_stop="768" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-U321883" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>768</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U321883" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35133" e_stop="34754"/>
          <exon e_start="33945" e_stop="33784"/>
          <exon e_start="33686" e_stop="33570"/>
          <exon e_start="33268" e_stop="33184"/>
          <exon e_start="32688" e_stop="32665"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACCTTCCGTCGTCTTCTTCATTTTTCTCATTTTCCCCTAAATTTTTTTTTCTTCCCATTTTGCCCTTCTACAAGATCTCTATATCCTCCATCCCTCTATATTTCCCGGTGTAAATTCCACCAAATTTGAGGGCATTTTCGGATAATTTTATCGATTTTTTAATATTTCGCCGGAAAAGTTCCATTGGAAATGACGGGAAATATTGGGGCATGAGGTATTCGTTTGTGGGGATAGAATTATGAGGGGATCTCTTTGGCCGGAGAATTCAAGTAGTGATTCATCTACGTCAAATCCGATTCATGTACCGCCGCCGCCGCCGCCGCCGGGATGGAATTCGCCTGCTCTTCCGATTGAGCAAAACCCTAATTGCAAAAACAGGTCATAGTTTTGATCCTGAAACCCTAAAGATTGAATTTTTATTGATTTTGATTAATGTCATTCAAAGATCTGAAATTTAGTTTAGTTTCAGCTTATTCGATGCTAGATTAAGAGGCTTTGATTGGTTTTAGAATTGGAAATTCATGATTTATCTGAGTTAATATAATTATGATATTTGCATCTTTTAATTAATGAAACTGTATTACACAATATTATAAACTCAGAGGCAGACCTCCAGTTGGAGTTTTGTCTGGTGAACTAAGTTTGGTATTTAAGCAGAGAAGGGTTGAGGCTGAAAACAACTTCTTTTTTTTTGGTTTAATTAAAAATCTTAACCAAAAAATATGTGAGTTTTATCTGTTATGTTGGCATACTTATTGTTAGCTTAAAAGGGTTCATGGTGATATGGATAATTGTAATGCTTCTGATATGGTTGCTGTTGGAATATGTCTTTGCATAAAATGATTGATCGTAAGCTTTAATTGGGGTGAGTTTAGTTTGAAACTATTTTTGCAAAGATGGGAAATATATCAGTTTTTAATTGTTTAATGTTGTATTTAATTATATTGTAATTGCGGAGTAGCATAGCGGAAATGACCTTCAACTTCTCGCCTTGAGTGGGTTCTGGTGTGGGGTGGGATGGTGGCGTTTACTATGTAAAAAAAAGATATGTTTATGATACACATGGGTAAGTGTTGTTAGTGTTTTCTCAAAGATTAACTTTTGTGGTTATGTGCGAAGTTTGTAAATTAGATTGCACAAATAAGGTTGTATTTTGGTTGCTGAGGTGGTTTATTTTGTTTGCCAGATGTGGTAATGTCTTTCAGCTACTAACGAAGAGGGAGGTATCTCCTCGAGCTAAACGTAGTTCTAAGAAGTTATGGGATGAGAATTCTAAATATTGTGCTCATTCCTATGAGAAGTTAAAAAGCCAAGTAGCAAGAGACCCGAGACGGGGTCTTATATCATGGTAGTTATGTTTTGTCAGCTTTTCTCTTTCCCATGAAGTTAATATAGTTGCAAATCTTCATTTTGCTTTCTGACTTCGGCTAGTTTAATTTTATCAGGGTAGAGGCAGAATCATTGAGACATTTTTCAGCTAAGTATTGTCCACTGTTGCCTCCGCCTAGGTCTACAATTGCTGCGGCATTCAGTCCTGATGGGAAGACACTTGCTTCTACTCAGTCAGTCTCTCTTTTAATACATCGACATGTACAATCTGTTATGTTATGCATTGTAGTGTCTCGCTGCTCAGATCTGAAATTGTTTATCTAACAATATCTTTTGAGTCCAAGTATTCATTATACACACATTTCTAAATCCTCAGTGACTATATTCATATCATAAAAAAGGAAAAAAAATGCAATCCGTTGTCAATATTCATGAATTGAGAACAAAGGCAAACATTCCACTTTTTCCGTGCTGTCCATTTTTTCTTTTGGCTTGTATCTAGTTCGTTGACGTATTCTGTTACCATGGTGTCAGTGGAGATCACACAGTAAAGATAATTGACTGCCAAAGCGGGAAATGCTTGAAGGTGTTAAGTGGACATCGCAGGACTCCTTGGGTGGTAAGACTGTTTTGACATCTTCAGTCATCTTAAACAGTTGTGCTGAATTCTTGGATTATCTACTTGGGAAATATATTCCAGTCCACTAGGCAATTAAAATGCTGAGATTTTGGATTGACAATATAGTTGGCTTTACAAAATGTCGAAGTATTATATTCTTTTAACTTAATGCTTATTGATGTTCTTCTAAGATGGCTAAACTATCTTATTTGGTTAAAATATTAATGCAGATAAATGATTGGTATCTATCTAAAAAATAGAGAGATAAATGTTTGATGTGTGCTCACAGGTCTAAGCCTAATTCATTTCATTTGAACCTCACACTTATGGAAGAGGATTGAACTTTATGAAGCTTTTTTCTGTTGTCTGTAGTTCTATTTTGAAAGCCTCTGGTGTTTTTTTTTTCCACACGTCTTGGCTGTATTGATATTTCTTCTCTTGCCTTTGAATCTCATTCCTCAATTATATTTAGCATTATGGTTGGGACTTCTGCAGGTTCGTTTCCATCCACTCTACTCT</genome_strand>
        <mrna_strand>ATACCTTCCGTCGTCTTCTTCATTTTTCTCATTTTCCCCTAAATTTTTTTTTCTTCCCATTTTGCCCTTCTACAAGATCTCTATATCCTCCATCCCTCTATATTTCCCGGTGTAAATTCCACCAAATTTGAGGGCATTTTCGGATAATTTTATCGATTTTTTAATATTTCGCCGGAAAAGTTCCATTGGAAATGACGGGAAATATTGGGGCATGAGGTATTCGTTTGTGGGGATAGAATTATGAGGGGATCTCTTTGGCCGGAGAATTCAAGTAGTGATTCATCTACGTCAAATCCGATTCATGTACCGCCGCCGCCGCCGCCGCCGGGATGGAATTCGCCTGCTCTTCCGATTGAGCAAAACCCTAATTGCAAAAACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGGTAATGTCTTTCAGCTACTAACGAAGAGGGAGGTATCTCCTCGAGCTAAACGTAGTTCTAAGAAGTTATGGGATGAGAATTCTAAATATTGTGCTCATTCCTATGAGAAGTTAAAAAGCCAAGTAGCAAGAGACCCGAGACGGGGTCTTATATCATG.................................................................................................GGTAGAGGCAGAATCATTGAGACATTTTTCAGCTAAGTATTGTCCACTGTTGCCTCCGCCTAGGTCTACAATTGCTGCGGCATTCAGTCCTGATGGGAAGACACTTGCTTCTACTCA.............................................................................................................................................................................................................................................................................................................TGGAGATCACACAGTAAAGATAATTGACTGCCAAAGCGGGAAATGCTTGAAGGTGTTAAGTGAACATCGCAGGACTCCTTGGGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCGTTTCCATCCACTCTACTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317131" ref_strand="+" ref_description="SGN-U317131        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: AT3G23920.1 | Symbol: None | beta-amylase, putative / 1,4-alpha-D-glucan maltohydrolase, putative, similar to beta-amylase enzyme (Arabidopsis thaliana) GI:6065749, beta-amylase PCT-BMYI from (Solanum tuberosum); contains Pfam profile PF01373: Glycosyl hydrolase family 14 | chr3:8641576-8644456 FORWARD | Aliases: F14O13.12 (evalue: 2e-19, score=92.4) genbank/nr: beta-amylase(evalue: 4e-51, score=203)">
      <seq>aaaaaaaaaaattaaaaaaattcatcatttttaatctgcaaaaaaaaaaattagttataatattattattattatggcaatgagtctgccacaccagatcggtgccttatcaggaacatcgctcacggcggaaaccggtggagtttcatgcgaagttccggcgaaggggagttcagctacatcagctatgtggagaacaccgatgacgaatttaaaagtatcggtgcaaaaaacaggaaatgaaattgacagggtgtcgccgtcgccgtcgccgccgatgagtccgatgatgggaggaggaatgcgaccggatttatcggtagcgtgtcaagcgttgatggaggctcaggtagaggaggtagttgagagagaatataaggttaggaattcgtcggagaaagagaaaggtgttccggtgtttgttatgatgccgttggatagtgtgaaaacggatcatactgtgaatagaaaaaaggcgatgaatgcgagtttacaggcgttgaaatgcgtgacggtgtgcagccacaagatgcacaatgatggatgtgtggtgggggttaggcaggtggcgttagatgcaccgggagagtataattggggcggttatgctgagcttatggaaatggcgaaaaacatggactcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="41274" stop="42504"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41574" g_stop="42204" g_length="631"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="644" r_length="644" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-U317131" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U317131" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41574" e_stop="42204"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAAAAATTAAAAAAAATTCATCATTTTTAATCTGCAAAAAAAAAAATTAGTTATAATATTATTATTATTATGGCAATGAGTCTGCCACACCAGATCGGTGCCTTATCAGGAACATCGCTCACGGCGGAAACCGGTGGAGTTTCATGCGAAGTTCCGGCGAAGGGGAGTTCAGCTACATCAGCTATGTGGAGAACACCGATGACGAATTTAAAAGTATCGGTGCAAAAAACAGGAAATGAAATTGACAGGGTGTCGCCGTCGCCGTCGCCGCCGATGAGTCCGATGATGGGAGGAGGAATGCGACCGGATTTATCGGTAGCGTGTCAAGCGTTGATGGAGGCTCAGGTAGAGGAGGTAGTTGAGAGAGAATATAAGGTTAGGAATTCGTCGGAGAAAGAGAAAGGTGTTCCGGTGTTTGTTATGATGCCGTTGGATAGTGTGAAAACGGATCATACTGTGAATAGAAAAAAGGCGATGAATGCGAGTTTACAGGCGTTGAAAAGC--GCCGGTGTG--G----AAG--GGATTATGATGGATGTGTGGTGGGGATT-GG----TGGAGAGAGATGCACCGGGAGAGTATAATTGGGGCGGTTATGCTGAGCTTATGGAAATGGCGAAAAAACATGGACTCAA</genome_strand>
        <mrna_strand>AAAAAAAAAAATTAAAA-AAATTCATCATTTTTAATCTGCAAAAAAAAAAATTAGTTATAATATTATTATTATTATGGCAATGAGTCTGCCACACCAGATCGGTGCCTTATCAGGAACATCGCTCACGGCGGAAACCGGTGGAGTTTCATGCGAAGTTCCGGCGAAGGGGAGTTCAGCTACATCAGCTATGTGGAGAACACCGATGACGAATTTAAAAGTATCGGTGCAAAAAACAGGAAATGAAATTGACAGGGTGTCGCCGTCGCCGTCGCCGCCGATGAGTCCGATGATGGGAGGAGGAATGCGACCGGATTTATCGGTAGCGTGTCAAGCGTTGATGGAGGCTCAGGTAGAGGAGGTAGTTGAGAGAGAATATAAGGTTAGGAATTCGTCGGAGAAAGAGAAAGGTGTTCCGGTGTTTGTTATGATGCCGTTGGATAGTGTGAAAACGGATCATACTGTGAATAGAAAAAAGGCGATGAATGCGAGTTTACAGGCGTTGAAATGCGTGACGGTGTGCAGCCACAAGATGCACAATGATGGATGTGTGGTGGGGGTTAGGCAGGTGGCGTTAGATGCACCGGGAGAGTATAATTGGGGCGGTTATGCTGAGCTTATGGAAATGGCG-AAAAACATGGACTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317132" ref_strand="+" ref_description="SGN-U317132        Tomato 200607 #1 [20 ESTs aligned] arabidopsis/peptide: AT3G23920.1 | Symbol: None | beta-amylase, putative / 1,4-alpha-D-glucan maltohydrolase, putative, similar to beta-amylase enzyme (Arabidopsis thaliana) GI:6065749, beta-amylase PCT-BMYI from (Solanum tuberosum); contains Pfam profile PF01373: Glycosyl hydrolase family 14 | chr3:8641576-8644456 FORWARD | Aliases: F14O13.12 (evalue: 0, score=711) genbank/nr: beta-amylase(evalue: 0, score=803)">
      <seq>aaaacatggactcaaagttcaagctgtgatgtctttccatcaatgcggtggtaacgtcggcgattcctgcacgatccctcttccgaggtgggttgttgaggagatggagaaggatccagatcttgcatacacagatcagtggggaaggaggaattttgaatatgtatcgcttggttgcgatacacttccagttcttaaaggaaggactcctgttcaatgctattctgatttcatgagagggtttagagatagatttgagaatctcttaggtgataccattgtggaaattcaagtcgggatgggtccagctggtgagctccgttatccatcctatcccgaaaaagatggaatatggaagttccctggaatcggtgcttttcagtgttatgataagtacatgatcggtagcttacagggtgcagcggaagcatttggtaagcctgaatggggacacaccggtccaaccgatgctggtgagtacaacaattggccagaagatacaaactttttcaagaaggaaggtggtggatgggatagtcaatacggggagttcttcctcacttggtattctcaaatgcttttgaaccatggcgagaggatactgcaatcatccaaggcgatattcgaggacaaaggtgtgaagatttcagttaagattgcaggtatccactggcactatggaacaaggtcccatgcccctgagttgactgctggatactacaacactcgtaaccgagatggttaccttcccatcgcccaaatgcttgcccgccacggtgcagttttcaacttcacatgtgttgaaatgcgtgaccacgagcagccacaagatgcacaatgtgcacctgagaagttggttaggcaggtggcgttagcaactcaggaagctcaagttccacttgctggggagaatgcattgccacgatacgatgattatgctcatgaacagatccttcaagcgtcctcgttgagcatcaacgatcaatcaggtgatagagagatgagcgcgtttacatacttgaggatgaatcctgacttattccatcctgataactggagacgattcgttgcctttgtgaagaaaatgaaagaaggaaaagacgctaacaaatgccgcgaacaggtagagagggaagcagagcatttcgttcatataactcagccgttagtacaagaagctgcagtagccctaatgcactaagcaaatcgttgtcaaatagtactgttttaatttgatccttttagctaacatgaagtttttcaacatgttacctggatcttatagctcgttatcgttgttcttaaatgtttgtaaaactgttcatcgtgtagtttttttaaagctagacattatgtcttaatgaaatgatacataattcagtagtaaaaaaaaaaaaaaaaaaaaaaaaaaaagaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="41890" stop="44673"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42190" g_stop="42261" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42262" i_stop="42874" i_length="613">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42875" g_stop="43085" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="283" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43086" i_stop="43164" i_length="79">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.799" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43165" g_stop="43275" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="394" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43276" i_stop="43374" i_length="99">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43375" g_stop="44368" g_length="994"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="1387" r_length="993" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1388" polyA_stop="1426"/>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-U317132" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1388</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U317132" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42190" e_stop="42261"/>
          <exon e_start="42875" e_stop="43085"/>
          <exon e_start="43165" e_stop="43275"/>
          <exon e_start="43375" e_stop="44368"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACATGGACTCAAAGTTCAAGCTGTGATGTCTTTCCATCAATGCGGTGGTAACGTCGGTGATTCCTGCACGTATGTATATTTTCTCCGATGCTATTTTTAATTCGTTTTAACTGCAAATTTGTGATTACCAGATTCAAAATCTAGATCTGTTATAATGAATACCGTCAAATCAAACATGATATAACTCGCATCTCAAAAGCTAATTCGAGATATTTTCACATCGGATGTGGCCTGACTATCATAACATGTCAAATTAGTATTTTATCGTAGTTTAACCTCACAAAAAGCTAACTTAAAAGGGAGAAGCATTGCTCGAAACGAGTGGAGAGATATCATTCCTCGTCGAGGTGGTAAATCTCTTCAACAAATACTTTTAGATAAAAGATTCATAGGATCTGGAAAAGATTAAAGAAGAAAGTTCAAAAAAAGGTTAGTGGATAGTGAGAATATGCTCCTTTATATGTGTGCTAAATGAACTATTTAAAGTAACTATATTTTATCTGGAAAGATAAATGACTTTATAATAGATTGGAATCAACCTGAATAGCATAAAATGGAATATGGAAGATTCATGAATAATTCAATTATCTTTGTTTAATTTTCATTCGAGTTCTGTTATGCGTTTTGATTTCTACTAATCGCGATGTATAGGCGTTGCTTAAGTAGATTTTTGAAATTTCAGGATCCCTCTTCCGAGGTGGGTTGTTGAGGAGATGGAGAAGGATCCAGATCTTGCATACACAGATCAGTGGGGAAGGAGGAATTTTGAATATGTATCGCTTGGTTGCGATACACTTCCAGTTCTTAAAGGAAGGACTCCTGTTCAATGCTATTCTGATTTCATGAGAGGGTTTAGAGATAGATTTGAGAATCTCTTAGGTGATACCATTGTGGTAAGTGCTATGTTTTTTTCGAATTTTTGATCGAAGAGTAGAAGACTCACTTTTTTAATCCAAATGACGTGTGATATAGGAAATTCAAGTCGGGATGGGTCCAGCTGGTGAGCTCCGTTATCCATCCTATCCCGAAAAAGATGGAATATGGAAGTTCCCTGGAATCGGTGCTTTTCAGTGTTATGATAAGGTATAAAGCAAGTTCTGTTTTCTATGGTGTGTTTTAGTGTTTAACGTCGTCATTATTACTGATGATTTGTTCTGTTAAATGTATTGTATCGCGTTGCAGTACATGATCGGTAGCTTACAGGGTGCAGCGGAAGCATTTGGTAAGCCTGAATGGGGACACACCGGTCCAACCGATGCTGGTGAGTACAACAATTGGCCAGAAGATACAAACTTTTTCAAGAAGGAAGGTGGTGGATGGGATAGTCAATACGGGGAGTTCTTCCTCACTTGGTATTCTCAAATGCTTTTGAACCATGGCGAGAGGATACTGCAATCATCCAAGGCGATATTCGAGGACAAAGGTGTGAAGATTTCAGTTAAGATTGCAGGTATCCACTGGCACTATGGAACAAGGTCCCATGCCCCTGAGTTGACTGCTGGATACTACAACACTCGTAACCGAGATGGTTACCTTCCCATCGCCCAAATGCTTGCCCGCCACGGTGCAGTTTTCAACTTCACATGTGTTGAAATGCGTGACCACGAGCAGCCACAAGATGCACAATGTGCACCTGAGAAGTTGGTTAGGCAGGTGGCGTTAGCAACTCAGGAAGCTCAAGTTCCACTTGCTGGGGAGAATGCATTGCCACGATACGATGATTATGCTCATGAACAGATCCTTCAAGCGTCCTCGTTGAGCATCAACGATCAATCAGGTGATAGAGAGATGAGCGCGTTTACATACTTGAGGATGAATCCTGACTTATTCCATCCTGATAACTGGAGACGATTCGTTGCCTTTGTGAAGAAAATGAAAGAAGGAAAAGACGCTAACAAATGCCGCGAACAGGTAGAGAGGGAAGCAGAGCATTTCGTTCATATAACTCAGCCGTTAGTACAAGAAGCTGCAGTAGCCCTAATGCACTAAGCAAATCGTTGTCAAATAGTACTGTTTTAATTTGATCCTTTTAGCTAACATGAAGTTTTTCAACATGTTACCTGGATCTTATAGCTCGTTATCGTTGTTCTTAAATGTTTGTAAAACTGTTCATCGTGTAGTTTTTTTAAAGTCTAGACATTATGTCTTAATGAAATGATACATAATTCAGTAGTAA</genome_strand>
        <mrna_strand>AAAACATGGACTCAAAGTTCAAGCTGTGATGTCTTTCCATCAATGCGGTGGTAACGTCGGCGATTCCTGCAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCCTCTTCCGAGGTGGGTTGTTGAGGAGATGGAGAAGGATCCAGATCTTGCATACACAGATCAGTGGGGAAGGAGGAATTTTGAATATGTATCGCTTGGTTGCGATACACTTCCAGTTCTTAAAGGAAGGACTCCTGTTCAATGCTATTCTGATTTCATGAGAGGGTTTAGAGATAGATTTGAGAATCTCTTAGGTGATACCATTGTG...............................................................................GAAATTCAAGTCGGGATGGGTCCAGCTGGTGAGCTCCGTTATCCATCCTATCCCGAAAAAGATGGAATATGGAAGTTCCCTGGAATCGGTGCTTTTCAGTGTTATGATAAG...................................................................................................TACATGATCGGTAGCTTACAGGGTGCAGCGGAAGCATTTGGTAAGCCTGAATGGGGACACACCGGTCCAACCGATGCTGGTGAGTACAACAATTGGCCAGAAGATACAAACTTTTTCAAGAAGGAAGGTGGTGGATGGGATAGTCAATACGGGGAGTTCTTCCTCACTTGGTATTCTCAAATGCTTTTGAACCATGGCGAGAGGATACTGCAATCATCCAAGGCGATATTCGAGGACAAAGGTGTGAAGATTTCAGTTAAGATTGCAGGTATCCACTGGCACTATGGAACAAGGTCCCATGCCCCTGAGTTGACTGCTGGATACTACAACACTCGTAACCGAGATGGTTACCTTCCCATCGCCCAAATGCTTGCCCGCCACGGTGCAGTTTTCAACTTCACATGTGTTGAAATGCGTGACCACGAGCAGCCACAAGATGCACAATGTGCACCTGAGAAGTTGGTTAGGCAGGTGGCGTTAGCAACTCAGGAAGCTCAAGTTCCACTTGCTGGGGAGAATGCATTGCCACGATACGATGATTATGCTCATGAACAGATCCTTCAAGCGTCCTCGTTGAGCATCAACGATCAATCAGGTGATAGAGAGATGAGCGCGTTTACATACTTGAGGATGAATCCTGACTTATTCCATCCTGATAACTGGAGACGATTCGTTGCCTTTGTGAAGAAAATGAAAGAAGGAAAAGACGCTAACAAATGCCGCGAACAGGTAGAGAGGGAAGCAGAGCATTTCGTTCATATAACTCAGCCGTTAGTACAAGAAGCTGCAGTAGCCCTAATGCACTAAGCAAATCGTTGTCAAATAGTACTGTTTTAATTTGATCCTTTTAGCTAACATGAAGTTTTTCAACATGTTACCTGGATCTTATAGCTCGTTATCGTTGTTCTTAAATGTTTGTAAAACTGTTCATCGTGTAGTTTTTTTAAAG-CTAGACATTATGTCTTAATGAAATGATACATAATTCAGTAGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U332253" ref_strand="+" ref_description="SGN-U332253        Tomato 200607 #1 [2 ESTs aligned]">
      <seq>gcaagtgatccatatggctcaaggtgcagttgatggagtgaagaacacacttggaattggatcagacaaaaagtgaaaaagagaaaatgaaattaattaattaattaattaattaattaacacatttatcaatttatatatctcaattttaattaatttttcatttaattctatgattttcacatatgctttagattattaagcataagtgaaaaaacataatattattagtttgtgagatctctcaccaaaagaattacaaaatttaattcttataaagtgagatgattttcataggtttggtttaattattgtttaacaattccatgcaccttatattggtgttatagtgaattttgttttattgatcgagatttctctcgttagaaattctcattataagtacgtaataagaaagttttattttgtttttgttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="46428" stop="47465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46728" g_stop="47164" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="437" r_length="437" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="438" polyA_stop="454"/>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-U332253" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U332253" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46728" e_stop="47164"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGTGATCCATATGGCTCAAGGTGCAGTTGATGGAGTGAAGAACACACTTGGAATTGGATCAGACAAAAAGTGAAAAAGAGAAAATGAAATTAATTAATTAATTAATTAATTAATTAACACATTTATCAATTTATATATCTCAATTTTAATTAATTTTTCATTTAATTCTATGATTTTCACATATGCTTTAGATTATTAAGCATAAGTGAAAAAACATAATATTATTAGTTTGTGAGATCTCTCACCAAAAGAATTACAAAATTTAATTCTTATAAAGTGAGATGATTTTCATAGGTTTGGTTTAATTATTGTTTAACAATTCCATGCACCTTATATTGGTGTTATAGTGAATTTTGTTTTATTGATCGAGATTTCTCTCGTTAGAAATTCTCATTATAAGTACGTAATAAGAAAGTTTTATTTTGTTTTTGTTA</genome_strand>
        <mrna_strand>GCAAGTGATCCATATGGCTCAAGGTGCAGTTGATGGAGTGAAGAACACACTTGGAATTGGATCAGACAAAAAGTGAAAAAGAGAAAATGAAATTAATTAATTAATTAATTAATTAATTAACACATTTATCAATTTATATATCTCAATTTTAATTAATTTTTCATTTAATTCTATGATTTTCACATATGCTTTAGATTATTAAGCATAAGTGAAAAAACATAATATTATTAGTTTGTGAGATCTCTCACCAAAAGAATTACAAAATTTAATTCTTATAAAGTGAGATGATTTTCATAGGTTTGGTTTAATTATTGTTTAACAATTCCATGCACCTTATATTGGTGTTATAGTGAATTTTGTTTTATTGATCGAGATTTCTCTCGTTAGAAATTCTCATTATAAGTACGTAATAAGAAAGTTTTATTTTGTTTTTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U321435" ref_strand="+" ref_description="SGN-U321435        Tomato 200607 #1 [9 ESTs aligned] arabidopsis/peptide: | Symbol: None | lipase class 3 family protein, very low similarity to diacylglycerol lipase (Aspergillus oryzae) GI:1772352; contains Pfam profiles PF01764: Lipase (class 3), PF00168: C2 domain | chr4:7871247-7876873 REVERSE | Aliases: T6G15.100, T6G15_100(evalue: 2e-120, score=429) genbank/nr: putative(evalue: 2e-118, score=429)">
      <seq>aaaagcaaggtgaaatgggggacaaaagagccaatgtggaatgaggagtttgctttaaatattaagcagccacctctgtatgatcttcagattgcagcttgggatgcaaatctggtgactccacataaacgcatgggaaatgcagcagttaatttggaacatctctgtgatggagattctcataaactgctggttgatttggatggaatgggcggtggtgggaagatagagatagagattaagtacaagagttttgagaaaattgaagaagaaaagaagtggtggaacatcccaatcattacagaatttctaagaaaaaacgggtttgagtctgctttgaagacaattcttggttccgagactgttcaagctcgacaatttgtacagtttgcgtttggacagatgaagctacttaatgatgcatataatgattcaaatagcagcagcagtcctgtcctggaatcagatgtactaccggagtcgcagcaatcatccaacttggatgactcaagcatgcccccagcatcagaaatctcaaataatttgaaagacaccaaagttgatggtgaagtgaagcttaatcgtgatggaagtgacgtaaccgatgaacatgattcccctggtactaaaattttagagagctttcaatcagataaacatttctggaagaattttgctgataccgtcaatcaaaaagttgttcaaagacttggtctccctgctcctgagaaaataaagtgggataatcttgacttgttaaataagattggattgcaatcacgaaaagacgcggatgcaagttatgttgaatctggtcttgcaactcctgataaacgagaaaatgttaatggtagtgcatcaactgaatcacctattcttaataacattcagtcatcacttccagatatcaagaaggtgacacaagacttattgcgtcaaactgataccattttgggagcattgatggttctaaatgccacagtttctcaattcaacaaaggagcaggccttttcggaaagggtgatgctaaagaagattcttcaactggactggaaaatgacatccttttatatcccatgaataaagatggaatagtgttggatgagaagaaagctgaggagatgaagtctcttttctcaacagcggagactgccatggaagcttgggcactgctagctacttcattgggacatccgacattcatcaaatctgaatttgacaaattatgcttcttagataatgagtcaactgacacagaggtagcgctctggcgtgattcagcaaggaaacggttagttgttgctttcaggggaacagaacaaacaaaatggaaggatcttgtgacggacttgatgctagttcctgcagggttgaatcctgaaaggataggcggggacttcaaggaagaagttcaggttcacagtggtttcctaagtgcatatgattcagttaggattaggctcatctcgcttatcaaaaaagcaattggctaccaggatgatgatcttgacacgccaaacaaatggcatgtttacgtgactggccatagtcttggtggtgcattggctactcttctcgctcttgaactatcatcaagtcaactagctaagcgtggagctatacgtgtgaccatgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="50865" stop="56980"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51165" g_stop="51184" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51185" i_stop="51693" i_length="509">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51694" g_stop="51763" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="90" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51764" i_stop="52407" i_length="644">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52408" g_stop="52489" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="172" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52490" i_stop="52862" i_length="373">
            <donor d_prob="0.770" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52863" g_stop="52927" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="237" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52928" i_stop="53147" i_length="220">
            <donor d_prob="0.765" d_score="1.00"/>
            <acceptor a_prob="0.844" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53148" g_stop="54170" g_length="1023"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="1260" r_length="1023" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="54171" i_stop="54283" i_length="113">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="54284" g_stop="54346" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1261" r_stop="1323" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="54347" i_stop="54425" i_length="79">
            <donor d_prob="0.910" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="54426" g_stop="54472" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1324" r_stop="1370" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="54473" i_stop="55186" i_length="714">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.896" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="55187" g_stop="55232" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1371" r_stop="1416" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="55233" i_stop="55340" i_length="108">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.608" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="55341" g_stop="55420" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1417" r_stop="1496" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="55421" i_stop="55790" i_length="370">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="55791" g_stop="55904" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1497" r_stop="1610" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="55905" i_stop="56653" i_length="749">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="56654" g_stop="56680" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1611" r_stop="1637" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-U321435" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1637</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U321435" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51165" e_stop="51184"/>
          <exon e_start="51694" e_stop="51763"/>
          <exon e_start="52408" e_stop="52489"/>
          <exon e_start="52863" e_stop="52927"/>
          <exon e_start="53148" e_stop="54170"/>
          <exon e_start="54284" e_stop="54346"/>
          <exon e_start="54426" e_stop="54472"/>
          <exon e_start="55187" e_stop="55232"/>
          <exon e_start="55341" e_stop="55420"/>
          <exon e_start="55791" e_stop="55904"/>
          <exon e_start="56654" e_stop="56680"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGCAAGGTGAAATGGGGGTAGGTAGTTGGTCATGTGTTAAACTGCAACCTTCTACTCTTTTCAGTCAGAACTTCTCTAGATCTTGTAGGTTTACTTAACAATGAGTCAGGTTCGTTGCATGTCGTCAACGTGTTCCTGTGCAAGTATTGCTTGCATAAGCCGAATGATAAAGTAACTAATATGAGAGTCTATTATGGTTACTAAATTCAGTCTTCTCTTCTGTTTGAGCAACGTATCAAATTTTTAGCAAAAACTTATTCTGGATTTAGTAAAATACAATTATTTTTCATCCATAACTCATATTCTATTGTTATCTTGAGTGTGATTATTCCACCAGTATCTTATTTGAAGTTCCATGCTTCTTTATCCTTTTAATTTGTCATCGAGAAGGCAAAAGGTCTACAATTGCTATTTTCTGTTGGAGAATAAAGCTATCCTTTTCTTTGTTCAAATTATGCACTATTTCAATCTTGAAACATAATCCAATAACGGAAAAAATGTTAATTTCATGAATTAATGTTTGCAGGACAAAAGAGCCAATGTGGAATGAGGAGTTTGCTTTAAATATTAAGCAGCCACCTCTGTATGATCTTCAGGTTGATAACTTGAGTTAATCCTTTCTCTCTAATAGTTTATTAATTAAAGGATAGCATTCCAGAAACTGTAACATTTTGCTTTTGAAATACGACTTCAATTTGCTGTAACTTAGCTCTTCCACATTAGGAAGTTTACGACACGGTATGTGGTACACCAAATCTCCTAATGATAAATGAGCAGTTCTGGTAAGATATGCAACTTGAAAAGCTTTAAGCTAACACTGCTAAATTAACTGTCTTCTGACTGACTGCTAATTCAATTATGAACGTGTATGTGAACTTCCCATATCCAACAATGTCTTTCTTGCTGAATGCTAGTTTTTCATTTCTACTTCCTGCTGAGATCCATAGTATTAACCAAATTGGAACAAACAGAATCAGTCTTTTAAGGTTATCGGCCTCGGACTAGAACTTACGGACTCGGAACTGCACATCTTGCTTTATGTTGTCTAAGATATCCATAAGAGTCTGCTTCTGTCTTTTTAGCTGCAGTCTTTAAAATGAGGAACAACTTATTTTTTCGTTATTTTTACCGTTATCTGCTCATTAGAGGACTTTCGGATGCAGTATGCTGGCATGACATGTTTTTAGGTGCTCTTATTTCTCGATTCCAGATCTGATGAATTATTCATTACTACTGTCAGATTGCAGCTTGGGATGCAAATCTGGTGACTCCACATAAACGCATGGGAAATGCAGCAGTTAATTTGGAACATCTCTGTGATGGTACGAGCTCAAGAAATGGTTCTCGTGATATATTGTGCTTCAAATAATTGTCTAGTTATCATGTTGGCTAAAATTTCATTCATGTAAATAAGGTTTGGCTTCCTTTCCAACTTATCCCATGAAAATGGGGGAAGAAGTTAAGAGTTCATTTTCAGTATGCATTTTGGTTGTGTTTTGATGACTACGTTGAAGGTGTCTCATTGCTCATAAAACAAATTGACAAAGGAAGAACACTTAAAGGAACCAAATTAGTTTCAATAGTTATATACTTCTGAATACTGTCATAACTGATATGAGAGCTGACATAAGGATTAGGCTGATATACAAACATTGATGTTTTAATTTGTGAAAATAACAAACATGTGTTTTCTAGGAGATTCTCATAAACTGCTGGTTGATTTGGATGGAATGGGCGGTGGTGGGAAGATAGAGATAGAGGTAAGTTGATTTGAATCTGGAGGCATATTCAAGGTTCAAGATCGCTAAGACCTTCATTTTACGAGGATTTATCAGACCATCACATTATTTTGATGTGTACACTCTATAGCTGATTAGTATGCTAATCTTAACTTCAGAATATCCTTCTTAAATGATACTCAATTTGACCATTGTTTATCCAATTCGAGATTCCACTAATTGTCCTACTAACATGATACAGATTAAGTACAAGAGTTTTGAGAAAATTGAAGAAGAAAAGAAGTGGTGGAACATCCCAATCATTACAGAATTTCTAAGAAAAAACGGGTTTGAGTCTGCTTTGAAGACAATTCTTGGTTCCGAGACTGTTCAAGCTCGACAATTTGTACAGTTTGCGTTTGGACAGATGAAGCTACTTAATGATGCATATAATGATTCAAATAGCAGCAGCAGTCCTGTCCTGGAATCAGATGTACTACCGGAGTCGCAGCAATCATCCAACTTGGATGACTCAAGCATGCCCCCAGCATCAGAAATCTCAAATAATTTGAAAGACACCAAAGTTGATGGTGAAGTGAAGCTTAATCGTGATGGAAGTGACGTAACCGATGAACATGATTCCCCTGGTACTAAAATTTTAGAGAGCTTTCAATCAGATAAACATTTCTGGAAGAATTTTGCTGATACCGTCAATCAAAAAGTTGTTCAAAGACTTGGTCTCCCTGCTCCTGAGAAAATAAAGTGGGATAATCTTGACTTGTTAAATAAGATTGGATTGCAATCACGAAAAGACGCGGATGCAAGTTATGTTGAATCTGGTCTTGCAACTCCTGATAAACGAGAAAATGTTAATGGTAGTGCATCAACTGAATCACCTATTCTTAATAACATTCAGTCATCACTTCCAGATATCAAGAAGGTGACACAAGACTTATTGCGTCAAACTGATACCATTTTGGGAGCATTGATGGTTCTAAATGCCACAGTTTCTCAATTCAACAAAGGAGCAGGCCTTTTCGGAAAGGGTGATGCTAAAGAAGATTCTTCAACTGGACTGGAAAATGACATCCTTTTATATCCCATGAATAAAGATGGAATAGTGTTGGATGAGAAGAAAGCTGAGGAGATGAAGTCTCTTTTCTCAACAGCGGAGACTGCCATGGAAGCTTGGGCACTGCTAGCTACTTCATTGGGACATCCGACATTCATCAAATCTGAATTTGACAAATTATGCTTCTTAGATAATGAGTCAACTGACACAGAGGCAAGTTCATATGTTGCTGGCTATGAGTTCTTAGTTTCTAATGTATCTTAGATCTGATTCATTTGATCCAAGGAAAGCTATTCTACTGATTTTGGATTCTGTAAGACTTGCAGGTAGCGCTCTGGCGTGATTCAGCAAGGAAACGGTTAGTTGTTGCTTTCAGGGGAACAGAACAAGTAGGTTCCGGTGTTAAACACATCTTTAAAACTTGTTGATTTAGCTTAGTTGTGGATAACCGGTTTTTCTTTTATCCAGACAAAATGGAAGGATCTTGTGACGGACTTGATGCTAGTTCCTGCAGGGTAAAATCACAAATCTGTACAAGCACAGGCTGGCTTTAGTTTTTCTTTCTTTCTCTACTTTGCCCTTCTGGTTTCTCTGTACTACTAAGATGTTTTTCCTATCACAGTAAACAGATTCTCCTTCCGTTCAATTTGTTTGTCTTACTTTCCTTTTTAATCCGTTTCGAAGAGAATGTCTCTTCCTTTTCTGAAAACTCTTTCATTCTAACTTTCCACATGACATGTTTAAGACCACAAGATTACAGTCATTTTGGTACATTCTACATATCATAATTTAAGACCACAGTATTCAAAAGTCTTCTTTACTTTCTTAAACTCTGTGCCAAGTCAAAACCAGTCAAACAAATCGAAACGGAGGGTGTAATTTTTTCTTCTCTAAGTCTCTGAAAGTGTACTTTTATTGAAATACAACTCTTTACTATGCTGAAAGAAACATTTCCTTTTTCTTAGAGGAATAGGAGTAGAAGATAACCTTCCATCCTACATTATTAAGTTTAGACTGCAAATACCATCATATCTAAAGGTTTTCCTGAAAAAAGTTTTAACTTCGAACATAATTTGAAACAACAAGAAATAGCCAAACACTTTGGTAATTTTGAATATGAATTGTACGTTCTTGCATCTTCATTATTCGGATGTTGTACAGAAACTTTAGATGGTTAAGCAACCACTGTCCATTTTATTTCGCATCCTGAGTTGTCTCCTACTCTGCAGGTTGAATCCTGAAAGGATAGGCGGGGACTTCAAGGAAGAAGTTCAGGTGGCACTGAAATTCTTACTTTTCTATCTCTTAGTGCCTGAAATATGAATGTATTCTACTTATATTTATAATTTTTCTAATTATCAGAACCAGAGATTATTTTTGTAGGTTCACAGTGGTTTCCTAAGTGCATATGATTCAGTTAGGATTAGGCTCATCTCGCTTATCAAAAAAGCAATTGGCTACCAGTAAGTGGACTGTTAAACAAAACTGTACAACATTGTTCCTCCTTTCCTATGTCTCTTTCGTACCTTCAAGTAGAAGTCGTGTCAAATATTTCTACAAGTCTATACTAAGTGGACTCGTGTCATGAGCTTAGTGTTACACTCCCAACTCTTAAAACTTGTTATGCGCTTTTGCTTTACTGAGATGTCTAGACCTGGCTTAGTCTTTTTTCTTCTGTTTATCCTTCTTTTCGTGTGGGTCTTGTTGCTGCTACTGTACATCTTATTCTTTGCCTTCTTCGCGGTTTCTTCTTTTTCTCTGTTTATGATGTACTTACTTCACCACTAAACATTGACGTCACATCGCTTATTACAATTTTAATGTATTTTCCAGGGATGATGATCTTGACACGCCAAACAAATGGCATGTTTACGTGACTGGCCATAGTCTTGGTGGTGCATTGGCTACTCTTCTCGCTCTTGAACTATCATCAAGTCAACTAGCTAAGTGAGCTCCTCCTTTTCTCTGCTTGTATCTGTAGCTTGTTTCCCATCCATTCTATATAATTTACCATTTACCAGCATCTCGCCAATAGGGCATGCATGTTTGGTTTTCTGCTTTGTATTTAACATGTTTGTAGTGTTCTTTGAGAATTTGAAATGCCTTACTTGAGCAGAGGGTCTATGGAAAACAACCTCTCTATCTCTACGAGGTAGGGTAACGTTTGCATACACTCTACCCTCCTTAGACCCCACCTGTGGACTGTTTTTTTTTTTTTTAAGAGCAGAAGTTGTAGAATTGTTGGTAGAATCCTATCAAATGTAGTTTCGATGCTAGTTACGTAAATAAACCTAACCATGGACTTGTATTCCAGTCTTATATCTATACTGATCAGTATTTGAATGTGTGACATTTTGTACCCAAAACTAATGTGCTACCAAGCTGCAGCACATCCCTTCAATTGTTCCATGTTGCCACTTTGATATCTTCTCTTGATGGTTTCATCCTTTTGACCAAATTGGACTTGTAGGTCCCCAAGTATTGTGATTGCTAAGTTGCTTGCTGCTTGTTCCATCATAATAGAACATCTTGCAAATTAAGGAGTTAGTGCAAAAAGAACGTCTGCAATTGTTAAATACAAATTTTCGGGCTGCCCTTGTTCTTGAAGTACTTGTGGAGAAAAACCAAGTCCTCCATCTCTAATCATGCTAACACTACATACGTGACCGTCTTATCTTTCTTGTTGGTTGTGTTAGGCGTGGAGCTATACGTGTGACCATGTA</genome_strand>
        <mrna_strand>AAAAGCAAGGTGAAATGGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAAAGAGCCAATGTGGAATGAGGAGTTTGCTTTAAATATTAAGCAGCCACCTCTGTATGATCTTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAGCTTGGGATGCAAATCTGGTGACTCCACATAAACGCATGGGAAATGCAGCAGTTAATTTGGAACATCTCTGTGATG.....................................................................................................................................................................................................................................................................................................................................................................................GAGATTCTCATAAACTGCTGGTTGATTTGGATGGAATGGGCGGTGGTGGGAAGATAGAGATAGAG............................................................................................................................................................................................................................ATTAAGTACAAGAGTTTTGAGAAAATTGAAGAAGAAAAGAAGTGGTGGAACATCCCAATCATTACAGAATTTCTAAGAAAAAACGGGTTTGAGTCTGCTTTGAAGACAATTCTTGGTTCCGAGACTGTTCAAGCTCGACAATTTGTACAGTTTGCGTTTGGACAGATGAAGCTACTTAATGATGCATATAATGATTCAAATAGCAGCAGCAGTCCTGTCCTGGAATCAGATGTACTACCGGAGTCGCAGCAATCATCCAACTTGGATGACTCAAGCATGCCCCCAGCATCAGAAATCTCAAATAATTTGAAAGACACCAAAGTTGATGGTGAAGTGAAGCTTAATCGTGATGGAAGTGACGTAACCGATGAACATGATTCCCCTGGTACTAAAATTTTAGAGAGCTTTCAATCAGATAAACATTTCTGGAAGAATTTTGCTGATACCGTCAATCAAAAAGTTGTTCAAAGACTTGGTCTCCCTGCTCCTGAGAAAATAAAGTGGGATAATCTTGACTTGTTAAATAAGATTGGATTGCAATCACGAAAAGACGCGGATGCAAGTTATGTTGAATCTGGTCTTGCAACTCCTGATAAACGAGAAAATGTTAATGGTAGTGCATCAACTGAATCACCTATTCTTAATAACATTCAGTCATCACTTCCAGATATCAAGAAGGTGACACAAGACTTATTGCGTCAAACTGATACCATTTTGGGAGCATTGATGGTTCTAAATGCCACAGTTTCTCAATTCAACAAAGGAGCAGGCCTTTTCGGAAAGGGTGATGCTAAAGAAGATTCTTCAACTGGACTGGAAAATGACATCCTTTTATATCCCATGAATAAAGATGGAATAGTGTTGGATGAGAAGAAAGCTGAGGAGATGAAGTCTCTTTTCTCAACAGCGGAGACTGCCATGGAAGCTTGGGCACTGCTAGCTACTTCATTGGGACATCCGACATTCATCAAATCTGAATTTGACAAATTATGCTTCTTAGATAATGAGTCAACTGACACAGAG.................................................................................................................GTAGCGCTCTGGCGTGATTCAGCAAGGAAACGGTTAGTTGTTGCTTTCAGGGGAACAGAACAA...............................................................................ACAAAATGGAAGGATCTTGTGACGGACTTGATGCTAGTTCCTGCAGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAATCCTGAAAGGATAGGCGGGGACTTCAAGGAAGAAGTTCAG............................................................................................................GTTCACAGTGGTTTCCTAAGTGCATATGATTCAGTTAGGATTAGGCTCATCTCGCTTATCAAAAAAGCAATTGGCTACCA..................................................................................................................................................................................................................................................................................................................................................................................GGATGATGATCTTGACACGCCAAACAAATGGCATGTTTACGTGACTGGCCATAGTCTTGGTGGTGCATTGGCTACTCTTCTCGCTCTTGAACTATCATCAAGTCAACTAGCTAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGAGCTATACGTGTGACCATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U346679" ref_strand="+" ref_description="SGN-U346679        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | lipase class 3 family protein, very low similarity to diacylglycerol lipase (Aspergillus oryzae) GI:1772352; contains Pfam profiles PF01764: Lipase (class 3), PF00168: C2 domain | chr4:7871247-7876873 REVERSE | Aliases: T6G15.100, T6G15_100(evalue: 7e-43, score=171) genbank/nr: gi|30682521|ref|NP_193091.2| lipase (class 3) family [Arabidopsis thaliana](evalue: 5e-41, score=171)">
      <seq>tttgatgttctctctcggtctctcctatggaggtggcttgtcataaatgaagtgtgaaactcttgaacatgctattgaatatgcattggtgcgttgtctaacatgtcagaccaacttttagcaagtttgagccataatcagatgccttatcacattgtttgccgatagttcatgggaatttcttgcctgttcttctattgtgacgtggtgaacggctgtaactaaatcactttcgcctgctttggaatcatactgagagcttaattttgttaaattctgagtgactctatataattaagttgcttcttatattgtagaaagttaaggacagctggagggttgtaaatcacagagatataataccaacagttcctcgcttgatgggctactgccatgttgctcaacctgtttatttggcagctggagatccgcaaaacacaatggataatgtggaactcttggaagatggttaccaaggtgatgttatcggagaggccacacctgatgttattgtcagtgaatttatgaaaggtgaaaaagaacttattgagaaaatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="56706" stop="58730"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57006" g_stop="57448" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="443" r_length="443" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57449" i_stop="57863" i_length="415">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57864" g_stop="57944" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="524" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57945" i_stop="58395" i_length="451">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58396" g_stop="58430" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="559" r_length="35" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-U346679" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U346679" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57006" e_stop="57448"/>
          <exon e_start="57864" e_stop="57944"/>
          <exon e_start="58396" e_stop="58430"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATGTTCTCTCTCGGTCTCTCCTATGGAGGTGGCTTGTCATAAATGAAGTGTGAAACTCTTGAACATGCTATTGAATATGCATTGGTGCGTTGTCTAACATGTCAGACCAACTTTTAGCAAGTTTGAGCCATAATCAGATGCCTTATCACATTGTTTGCCGATAGTTCATGGGAATTTCTTGCCTGTTCTTCTATTGTGACGTGGTGAACGGCTGTAACTAAATCACTTTCGCCTGCTTTGGAATCATACTGAGAGCTTAATTTTGTTAAATTCTGAGTGACTCTATATAATTAAGTTGCTTCTTATATTGTAGAAAGTTAAGGACAGCTGGAGGGTTGTAAATCACAGAGATATAATACCAACAGTTCCTCGCTTGATGGGCTACTGCCATGTTGCTCAACCTGTTTATTTGGCAGCTGGAGATCCGCAAAACACAATGGTGAGTAGATTTCATTTTCTCACTTTTTACACTATAAAACGTTGGATTGGCAGAATGTTGGCACTGTTAAGGAAGTTGTGTTTTCCCGTTAGAGATTAAAGTGGAAAAATGTGTCGGATGGTTAGCTTAACCTGAAGGAAATCACAGAAGGTTCAAAACAATTGACCTTTGTTATTTCTTCTATAAAACTATTAACTCAATTGCTCGAAGTAACTTTTTGATATTTTCTTCATAGTGTAGGTAGAAAGTATCAAGAAGTACTATGTCATTCTTACTTATTATGTATGGGAACCTACTATCGTTACCTCCCTGGAAAAAGTCGGAAAGAAAATATGATCATTTTTTACATCATTCCTTTTATACGTGAAAGGAGCTTGTTGTTTAACTATATATGTCTCGGCACATCACATTTCAGGATAATGTGGAACTCTTGGAAGATGGTTACCAAGGTGATGTTATCGGAGAGGCCACACCTGATGTTATTGTCAGTGAATTTGTATGTTTCTCCACCTTTGTTCTCCTGTATCTTTAGTTCCTTCGTTTTGGTTCTGTGCTCCATTTCATCCATTCGTGATTTGTTCTATTAAGATCTTCAACTGTTAAAATTGTACTGCTACTTACCGTACATTTGACCAATTGAGACTTCTGTTTATTCATTTTGTTCAATACTTCGCCTAATGGAGAGTCTCCTTGAGGCATAAGCTTATCAATTCACTCCATTAGGTTGAAGCCATGTTGCTCGGAGTTTTGTGTTGGATCCTTCAAAAGCTATGCATTGTTAGGGGATCCGAGACAGGTTTGGCAACATTTTTGGGAGGTCCGAGCAAGAATTGCGGGAGGGGAGCTTGTTCTGAGTTATTTTTGCTATATGGAACACATTTCCTTTTTATTTAAAGGTAAAGAACTCTTGATAATCTCGCGATTACTTATCGTAACGTTTTGTGCAGATGAAAGGTGAAAAAGAACTTATTGAGAAAATACT</genome_strand>
        <mrna_strand>TTTGATGTTCTCTCTCGGTCTCTCCTATGGAGGTGGCTTGTCATAAATGAAGTGTGAAACTCTTGAACATGCTATTGAATATGCATTGGTGCGTTGTCTAACATGTCAGACCAACTTTTAGCAAGTTTGAGCCATAATCAGATGCCTTATCACATTGTTTGCCGATAGTTCATGGGAATTTCTTGCCTGTTCTTCTATTGTGACGTGGTGAACGGCTGTAACTAAATCACTTTCGCCTGCTTTGGAATCATACTGAGAGCTTAATTTTGTTAAATTCTGAGTGACTCTATATAATTAAGTTGCTTCTTATATTGTAGAAAGTTAAGGACAGCTGGAGGGTTGTAAATCACAGAGATATAATACCAACAGTTCCTCGCTTGATGGGCTACTGCCATGTTGCTCAACCTGTTTATTTGGCAGCTGGAGATCCGCAAAACACAATG...............................................................................................................................................................................................................................................................................................................................................................................................................................GATAATGTGGAACTCTTGGAAGATGGTTACCAAGGTGATGTTATCGGAGAGGCCACACCTGATGTTATTGTCAGTGAATTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAAAGGTGAAAAAGAACTTATTGAGAAAATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U320649" ref_strand="+" ref_description="SGN-U320649        Tomato 200607 #1 [11 ESTs aligned] arabidopsis/peptide: | Symbol: None | malate dehydrogenase (NAD), chloroplast (MDH), identical to chloroplast NAD-malate dehydrogenase (Arabidopsis thaliana) GI:3256066; contains InterPro entry IPR001236: Lactate/malate dehydrogenase; contains Pfam profiles PF00056: lactate/malate dehydrogenase, NAD binding domain and PF02866: lactate/malate dehydrogenase, alpha/beta C-terminal domain | chr3:17524259-17526026 FORWARD | Aliases: F1P2.70(evalue: 9e-161, score=563) genbank/nr: gi|5123836|emb|CAB45387.1| NAD-malate dehydrogenase [Nicotiana tabacum](evalue: 0, score=660)">
      <seq>cttagttatctgcctcggaacctccgaattttataatcttataggtagaagtgaagaaaaaatcagtaaaaattctgagaatttgagtcggtgaaatggcagcagcatcagcaactactctctcagttggttccgccacatcctttggctccatagtgagcccaaaattacaatcaaaggcctttattgcgaaatgcaataccagggactaccttaggagtttcagtggccttaaggcagaggcatttgtacgatgtgaatccgagtcgtcatttctaggaaatgaaagcattgcagctcttcgacaatccattactcctaaagcccgaaaccaaaagcagagatcttcgaaccatgttcagcctcaagcatcttataaagtggctgttctcggagcctctggcggtataggccagcctctagctcttctgattaagatgtcaccgctagtatcatcgttgcacctttatgatattgcaaatgtcaaaggagtcgcagcagatctcagccattgcaacactcccgctcaggtttttgactttacgggagcttctgagttggccaattctttgaaaggtatagatgtagttgtcataccagctggcgttccgagaaagcctggtatgacacgggacgacttgttcaacataaatgctaatattgtgaaaagcttggttgaggctgttgctgacaattgcccagatgcctttatccacattatcagcaatccagtcaactccacagtgccgattgctgccgaggttctgaagcaaaagggtgtgtatgatcctaaaaaactctttggtgttaccaccctggacgttgtcagagcaaacacattcgtcgcgcagaagaaaaacctgaaactcattgacgttgacgtccccgtgattcgtgggcatgcagggataacaattctgccattgctgtcaaagacaagaccatcaactactttcacggacgaagaagtgcaggaactaaccgtgaggatccaaaacgctgggaccgaggtcgttgaagcaaaggctggagcaggatctgcaacactgtcaatggcatatgctgcagctagatttgttgaatcctcacttcgtgcccttgacggtgatgctgatgtttacgagtgttcttacgttcaatctgacctgacggaacttccattctttgcatcacgagttaaactaggaaggaatggaatcgaggcattgatttcgtctgatctccgtggattaactgagtatgaacagaaggcattagaagctctaaagatagagttgaaagctagcattgagaaagggatagcttatgctcaaaaacaaacagtgagtgcttagagaaagagtttagtttagattaactataggaaaagattctcaacatgacaatttttgcatggtttgaacttactaagccctttattctttttattggtctgaactctactagtgntttgttattgcttccttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="+" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="62881" stop="66569"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63181" g_stop="63267" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63268" i_stop="64889" i_length="1622">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64890" g_stop="66269" g_length="1380"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="1467" r_length="1380" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="+" ref_id="SGN-U320649" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1467</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U320649" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63181" e_stop="63267"/>
          <exon e_start="64890" e_stop="66269"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAGTTATCTGCCTCGGAACCTCCGAATTTTATAATCTTATAGGTAGAAGTGAAGAAAAAATCAGTAAAAATTCTGAGAATTTGAGGTAATTTTTTATTGTGATTATATATGATTTCCTGAACTTTTTTTTATTGATTTTTTGTTTATTTTCTTGTGCCATTTTGGTGTAATTTGTCAATTTTATGTAGAGTTTTGCTATATTTGATGTTCTTTGTCTGTGTTAGGCTAAAGGGGGTTCTTGAAAAATGAAAAGAAGAATAAAGTTTGAATCTTTTCATTTGATTATTCAATTGAAGGCTGTATTTACCACAAAGAAAGTTAATTTATTTAAGGGGTTAGCTTGATTTGTGATTTCTTCCAATGTGTTCAAGCTTTGGTGGATAGGGTTACTTGGTACCTATATTGGTGGGAGGTAGTAAGTAGCGGGGGAATTAATCGAGGTGCGTGCGAGCTGGTTCAGACACCACAAAGAAAGTTAATTTATTTAAGGCAATGTGTCTAAGCTTTGTTTGGTGGATACTGAATAGGGTTACCTGGTACCAATGATGGTGGGAGGTAGAAGGCACCTGTGGAACTAATCGAGGTGTGTGCAAGCTGGTCCAGACACCACAAAGAAAGTTAATTTATTTAAGGCAATGTGTCCAAGCTTTGTTTGGTGGATAGGGTTACCTTGTAAGGATGCTGGTAGTAGGGTACCCGAGGAATTAGTCGGTTGCATGCAAGTTGGCGTAGACATCACGATATTTAAAAAAGAAAGAGGATATCCCATTCCTAGCAGCCTTAACAGTTGACTGTGGCAGAATTCTCTCTCTGCTGTTGGTCCTTTTAGGATTTCTGCAGAACTGTTCAATTACACTTCGAGGTATCTCACGCGAAATGTTAGGACGTATGTGTCTAGTTGTTTCAACTTTATACAATCAGGTGCATACCCAAAGTTGGAAGGCATAGATGTTAGCTGATGCCAAGTTAAAGGGAAACGTTTATTTATTATGTCTAATATGAATGATACAGTGAATACTTACACTTTTCCTGTCATCAATCTTTCAAAATCGCTGATGCTGTATTTTTCCTGTCTTTTCTGCTGAGCTGAATAGTTGGCTTATATGTTTTACTGGTGTTCCGTGCATATGAGATGATTTAGTACAGTTGTTTGCGAATGTAAACATTTCAAAACGTGTCTTCTATAGCTTGATTTGGATAATAAATGTATGAACTTGGATGCATTGTTTGTTAAACAACTTATTTGACTATTTTTCTTTGTTAGGCTCAAACTCCTTTTCGATGATTTTACACTAGTCGGAAATTTCTTTCTTTTTCCCTGGTTTAGGGGGTCGTGAAGCAATGAACTCCCTTTTCTTTTAATTTTTTCGACAAATCTTATTAACAACCGAAAAATAGACTTTGCTGGTTTCTAAGAGTGAAGTTTTAAAGTGTCCATTTGGGGACATCCGATGAAATTGGAACAATAAGAGTAAATGCTTAAGTAGATCATTATATACTGTGTTTGGTAGAGAGTGTTCACAACATGTTTTAGAATGTAGAATAAGTGCGACACTAAGTAACCCGTTGTTCATCTATTCGTTGTGGTTTGCAATAAATATTCATCGATTATCAGTGTAAAAAACTCCTGAATTTCCTCCCATGTATGTTCTAAAATCGTGTCTTACAATGCATAGAAGAAATTAATGTCAGCGATCCTTTTTGCAGTCGGTGAAATGGCAGCAGCATCAGCAACTACTCTCTCAGTTGGTTCCGCCACATCCTTTGGCTCCATAGTGAGCCCAAAATTACAATCAAAGGCCTTTATTGCGAAATGCAATACCAGGGACTACCTTAGGAGTTTCAGTGGCCTTAAGGCAGAGGCATTTGTACGATGTGAATCCGAGTCGTCATTTCTAGGAAATGAAAGCATTGCAGCTCTTCGACAATCCATTACTCCTAAAGCCCGAAACCAAAAGCAGAGATCTTCGAACCATGTTCAGCCTCAAGCATCTTATAAAGTGGCTGTTCTCGGAGCCTCTGGCGGTATAGGCCAGCCTCTAGCTCTTCTGATTAAGATGTCACCGCTAGTATCATCGTTGCACCTTTATGATATTGCAAATGTCAAAGGAGTCGCAGCAGATCTCAGCCATTGCAACACTCCCGCTCAGGTTTTTGACTTTACGGGAGCTTCTGAGTTGGCCAATTCTTTGAAAGGTATAGATGTAGTTGTCATACCAGCTGGCGTTCCGAGAAAGCCTGGTATGACACGGGACGACTTGTTCAACATAAATGCTAATATTGTGAAAAGCTTGGTTGAGGCTGTTGCTGACAATTGCCCAGATGCCTTTATCCACATTATCAGCAATCCAGTCAACTCCACAGTGCCGATTGCTGCCGAGGTTCTGAAGCAAAAGGGTGTGTATGATCCTAAAAAACTCTTTGGTGTTACCACCCTGGACGTTGTCAGAGCAAACACATTCGTCGCGCAGAAGAAAAACCTGAAACTCATTGACGTTGACGTCCCCGTGATTGGTGGGCATGCAGGGATAACAATTCTGCCATTGCTGTCAAAGACAAGACCATCAACTACTTTCACGGACGAAGAAGTGCAGGAACTAACCGTGAGGATCCAAAACGCTGGGACCGAGGTCGTTGAAGCAAAGGCTGGAGCAGGATCTGCAACACTGTCAATGGCATATGCTGCAGCTAGATTTGTTGAATCCTCACTTCGTGCCCTTGACGGTGATGCTGATGTTTACGAGTGTTCTTACGTTCAATCTGACCTGACGGAACTTCCATTCTTTGCATCACGAGTTAAACTAGGAAGGAATGGAATCGAGGCATTGATTTCGTCTGATCTCCGTGGATTAACTGAGTATGAACAGAAGGCATTAGAAGCTCTAAAGATAGAGTTGAAAGCTAGCATTGAGAAAGGGATAGCTTATGCTCAAAAACAAACAGTGAGTGCTTAGAGAAAGAGTTTAGTTTAGATTAACTATAGGAAAAGATTCTCAACATGACAATTTTTGCATGGTTTGAACTTACTAAGCCCTTTATTCTTTTTATTGGTCTGAACTCTACTAGTGTTTTGTTATTGCTTCCTTT</genome_strand>
        <mrna_strand>CTTAGTTATCTGCCTCGGAACCTCCGAATTTTATAATCTTATAGGTAGAAGTGAAGAAAAAATCAGTAAAAATTCTGAGAATTTGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGTGAAATGGCAGCAGCATCAGCAACTACTCTCTCAGTTGGTTCCGCCACATCCTTTGGCTCCATAGTGAGCCCAAAATTACAATCAAAGGCCTTTATTGCGAAATGCAATACCAGGGACTACCTTAGGAGTTTCAGTGGCCTTAAGGCAGAGGCATTTGTACGATGTGAATCCGAGTCGTCATTTCTAGGAAATGAAAGCATTGCAGCTCTTCGACAATCCATTACTCCTAAAGCCCGAAACCAAAAGCAGAGATCTTCGAACCATGTTCAGCCTCAAGCATCTTATAAAGTGGCTGTTCTCGGAGCCTCTGGCGGTATAGGCCAGCCTCTAGCTCTTCTGATTAAGATGTCACCGCTAGTATCATCGTTGCACCTTTATGATATTGCAAATGTCAAAGGAGTCGCAGCAGATCTCAGCCATTGCAACACTCCCGCTCAGGTTTTTGACTTTACGGGAGCTTCTGAGTTGGCCAATTCTTTGAAAGGTATAGATGTAGTTGTCATACCAGCTGGCGTTCCGAGAAAGCCTGGTATGACACGGGACGACTTGTTCAACATAAATGCTAATATTGTGAAAAGCTTGGTTGAGGCTGTTGCTGACAATTGCCCAGATGCCTTTATCCACATTATCAGCAATCCAGTCAACTCCACAGTGCCGATTGCTGCCGAGGTTCTGAAGCAAAAGGGTGTGTATGATCCTAAAAAACTCTTTGGTGTTACCACCCTGGACGTTGTCAGAGCAAACACATTCGTCGCGCAGAAGAAAAACCTGAAACTCATTGACGTTGACGTCCCCGTGATTCGTGGGCATGCAGGGATAACAATTCTGCCATTGCTGTCAAAGACAAGACCATCAACTACTTTCACGGACGAAGAAGTGCAGGAACTAACCGTGAGGATCCAAAACGCTGGGACCGAGGTCGTTGAAGCAAAGGCTGGAGCAGGATCTGCAACACTGTCAATGGCATATGCTGCAGCTAGATTTGTTGAATCCTCACTTCGTGCCCTTGACGGTGATGCTGATGTTTACGAGTGTTCTTACGTTCAATCTGACCTGACGGAACTTCCATTCTTTGCATCACGAGTTAAACTAGGAAGGAATGGAATCGAGGCATTGATTTCGTCTGATCTCCGTGGATTAACTGAGTATGAACAGAAGGCATTAGAAGCTCTAAAGATAGAGTTGAAAGCTAGCATTGAGAAAGGGATAGCTTATGCTCAAAAACAAACAGTGAGTGCTTAGAGAAAGAGTTTAGTTTAGATTAACTATAGGAAAAGATTCTCAACATGACAATTTTTGCATGGTTTGAACTTACTAAGCCCTTTATTCTTTTTATTGGTCTGAACTCTACTAGTGNTTTGTTATTGCTTCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U344226" ref_strand="+" ref_description="SGN-U344226        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: hypothetical(evalue: 2e-07, score=59.3)">
      <seq>ttattgtagatgaccaattttttcttcgaatacgaaattaaattacaatacacacaaaaaaaatatttgaattttttttatttaaactaaggaatgaaagaaaaaaacaaaataagaataagaaactcaaattattataataaaagaagtcaaaaaataatttttgtatgaaaaaattaaaatataccttgaactttgatagaagaatcatatatatccctaaatattttttttaaaaaaaaattagaagtaacaaatataaatttaaaactaattttttaactttcgttaaatgaagggtatatgtgagccattttctaacggcaggggtatatgtgagccgtttgtataacgataagggcatatatgaaccacttttattacgagggatatatcagctctaaatgacaaagttgagaggtatatcagacccttttccctattttttaaaatttcatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0177O17-zTwKI/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0177O17.1" temp_strand="-" temp_description="C09HBa0177O17.1  AC234695.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0177O17 upload_account_name:spain (1 - 97284)">
        <position start="92647" stop="91605"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92347" g_stop="91907" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="441" r_length="441" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0177O17.1" gen_strand="-" ref_id="SGN-U344226" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0177O17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U344226" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92347" e_stop="91907"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTGTAGATGACCAAATTTTTTTCCGAATACGAAATTAAATTACAATACACAC-AAAACAATAGTTTAATTTTTTTTCTTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGGATAAGAAACTCAAATAATTATAATAAAAGAAGTCAAAAAATAATTTATGTATGAAAAAAATTAAAAAATATACCTTGAACTTTTATAGAAGAATCATATGTACCACTAAATAATTTTTTT--TTAAAAATTATAAGTAATAAATATAAATTTAAAACTAATTATTTAACTTTCGTCAAATGAAGGGTATATGTGAGCCATTTTGTAACGGTAGGTGTATATGTGAGCCATTTGTATAACGGTAAGGGCATATATGAGCCACTTTCATAACGAGGGATGTATCAGCTCCAAATGACAAAGTTGAGGGGTATATCAGACCCTTTTCCCT</genome_strand>
        <mrna_strand>TTATTGTAGATGACCAATTTTTTCTTCGAATACGAAATTAAATTACAATACACACAAAAAAAATATTTGAATTTTTTTTATTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGAATAAGAAACTCAAATTATTATAATAAAAGAAGTCAAAAAATAATTTTTGTATG-AAAAAATT--AAAATATACCTTGAACTTTGATAGAAGAATCATATATATCCCTAAATATTTTTTTTAAAAAAAAATTAGAAGTAACAAATATAAATTTAAAACTAATTTTTTAACTTTCGTTAAATGAAGGGTATATGTGAGCCATTTTCTAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGATAAGGGCATATATGAACCACTTTTATTACGAGGGATATATCAGCTCTAAATGACAAAGTTGAGAGGTATATCAGACCCTTTTCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>21</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="41" PGL_stop="4385"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41" e_stop="616"/>
            <exon e_start="712" e_stop="787"/>
            <exon e_start="1937" e_stop="2109"/>
            <exon e_start="2493" e_stop="2583"/>
            <exon e_start="2663" e_stop="2917"/>
            <exon e_start="3405" e_stop="3577"/>
            <exon e_start="3952" e_stop="4385"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.965" e_score="0.996"/>
          <exon-intron don_prob="0.440" acc_prob="0.822" e_score="1.000"/>
          <exon-intron don_prob="0.946" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.846" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.963" e_score="0.996"/>
          <exon-intron don_prob="0.931" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="41" e_stop="616" e_length="576"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.965">
            <gDNA_intron_boundary i_start="617" i_stop="711" i_length="95"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="712" e_stop="787" e_length="76"/>
          </exon>
          <intron i_serial="2" don_prob="0.440" acc_prob="0.822">
            <gDNA_intron_boundary i_start="788" i_stop="1936" i_length="1149"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="1937" e_stop="2109" e_length="173"/>
          </exon>
          <intron i_serial="3" don_prob="0.946" acc_prob="0.998">
            <gDNA_intron_boundary i_start="2110" i_stop="2492" i_length="383"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="2493" e_stop="2583" e_length="91"/>
          </exon>
          <intron i_serial="4" don_prob="0.846" acc_prob="1.000">
            <gDNA_intron_boundary i_start="2584" i_stop="2662" i_length="79"/>
          </intron>
          <exon e_serial="5" e_score="0.996">
            <gDNA_exon_boundary e_start="2663" e_stop="2917" e_length="255"/>
          </exon>
          <intron i_serial="5" don_prob="0.979" acc_prob="0.963">
            <gDNA_intron_boundary i_start="2918" i_stop="3404" i_length="487"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="3405" e_stop="3577" e_length="173"/>
          </exon>
          <intron i_serial="6" don_prob="0.931" acc_prob="0.995">
            <gDNA_intron_boundary i_start="3578" i_stop="3951" i_length="374"/>
          </intron>
          <exon e_serial="7" e_score="0.993">
            <gDNA_exon_boundary e_start="3952" e_stop="4385" e_length="434"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41" stop="571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U329483" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="561" stop="616"/>
              <exon start="712" stop="787"/>
              <exon start="1937" stop="2109"/>
              <exon start="2493" stop="2583"/>
              <exon start="2663" stop="2917"/>
              <exon start="3405" stop="3577"/>
              <exon start="3952" stop="4385"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U322791" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAAAGAACTTGGATAATACTCCTACTTGTAAAATCCCATAGTCTTCACATAAAATCATTTAGAAGAGCTTAATTTGATGGGAATTTAAAAGGGTTGTCTTGAAATACTTCAATTTTTTCTAATCTTGGAAAACTGTATTAAGCTCAAAGGTGACATTTTTATCTTGTCATAAGCAAGAAAGTTCAAAATGTTGCCTAAAGAACCATCATTTTGTATATATAATACTGAAGATGGGGTTGATGAGATGAAGGAAAATCAAGATTTGGTTAGGTCTGTGACAATAGGGGATATTGTATCAGATATAGGTAGTAGTGATTTCAGTTTTGGGAAAAAGGGGATGGGGTTGATTGAGGAAGATGAGAATGAAGATGAGGAAAAAAGGGTTTTTTATGAGGTTAATGAGCTAGGATTTGAAGAGAGTGAACAAGTAATTAGTTCAAAGTATCATGGTGGGGTTGAGTTTGAACCTTTAGATTTTGATGGAAATGGAGATGTTGAGGAATATTATAAAAGGGTTCTTAAAGAAGATCCCTGTAACCCTTTGTTTTTGAGGAATTATGCTCAACTTTTGCAG : TTGCTTAGAAATGCTTTATTTATAAGCCGAGGGTCTAGCGGAAACAACCTCTCTATCTCTATGAGATAAAGGAAAG : TCTAAGGGAGATCTTCCTGGAGCTGAACACTATTACTTTCAAGCTACACTAGCTGATCCAAAAGATGGAGATACCTTGTCACAGTATGCTAAGTTAGTATGGGAGCTGCACCAAGATAAAGATAGAGCATCAGATTACTTTGAACGTGCAGTACGTACTGCTCCTGAGAACAG : CCATGTTCTTGGAGCATATGCTAGTTTCCTCTGGGACATTACTGACGATGAAAGTGAGGATGAAATGAACACACAGAGTGATAAGACTAAG : ATTGAGGAAAGTGGGGAAGCTACTGTATCCCGGAACTTAGATTACGAAGAAGCTGACAGACCTGTTAGCCCTCCCTTACATCTTGCAGCAGGATTAGGAATTGGGGTTAATCTAGTTGGTGGCAGCTCTCCTGTTGATTATACTGCAGCTGTATCTGATATGGACGGAAATGCCGAGGAGGAGTACATGAGAATGATCAAAGAATATCCTCATCACTCCGTGCTTTTAAGAAACTATGCTCAGTTTCTTAGTCAG : TCTAAGGGAGACCTACTAGGTGCTGAAGAATATTACTCACACGCAATACTAGCTGATCCTACTGATGGAGAAACTATTTCACAGTATGCCATGTTGATATGGCAACTTCATCAGGATAAAGATAAAGCCTCAACCTACTTTAAGAGGGCAGTACAAGCTTCTCCACAAGACAG : CGACGTGCTTGCTGCATATGCTAGGTTTCTCTGGCAAACAGAGGAAGATGAAGACGGAGAAGAAGATGAAACGTTAGGTGATCACAATGGAGCGCCACTTCTGCAAGGAGTCGCCTAAAGCCTGATGTCAAATGAATTTCACAATCCAGATTCTAATTCATATTTTAGTTTCTCAAGCTTTTCGCATTATCTAAAGACTTGGAGATTTCTCTTGTTGTGGAGGATCAACTATTCTGGGAAAATTTTTAGATGGTAAGTGTTGTTTAATGAGCAATAAAATGTGCACAATAATGTTAAATTGACTTTGTACAATGTTATTTTTGGGAATAATGATAGCAGTTGAAAGAGTTGAATGAAAAATTAAATAGTGACTCTGCATTGTAGTAATATACTGTTTTGTACCTCTATTTGTATACAACATTCACAAATGACAA</gDNA_template>
            <first_frame> K  K  E  L  G  *  Y  S  Y  L  *  N  P  I  V  F  T  *  N  H  L  E  E  L  N  L  M  G  I  *  K  G  C  L  E  I  L  Q  F  F  L  I  L  E  N  C  I  K  L  K  G  D  I  F  I  L  S  *  A  R  K  F  K  M  L  P  K  E  P  S  F  C  I  Y  N  T  E  D  G  V  D  E  M  K  E  N  Q  D  L  V  R  S  V  T  I  G  D  I  V  S  D  I  G  S  S  D  F  S  F  G  K  K  G  M  G  L  I  E  E  D  E  N  E  D  E  E  K  R  V  F  Y  E  V  N  E  L  G  F  E  E  S  E  Q  V  I  S  S  K  Y  H  G  G  V  E  F  E  P  L  D  F  D  G  N  G  D  V  E  E  Y  Y  K  R  V  L  K  E  D  P  C  N  P  L  F  L  R  N  Y  A  Q  L  L  Q  :  L  L  R  N  A  L  F  I  S  R  G  S  S  G  N  N  L  S  I  S  M  R  *  R  K   : V  *  G  R  S  S  W  S  *  T  L  L  L  S  S  Y  T  S  *  S  K  R  W  R  Y  L  V  T  V  C  *  V  S  M  G  A  A  P  R  *  R  *  S  I  R  L  L  *  T  C  S  T  Y  C  S  *  E  Q  :  P  C  S  W  S  I  C  *  F  P  L  G  H  Y  *  R  *  K  *  G  *  N  E  H  T  E  *  *  D  *   : D  *  G  K  W  G  S  Y  C  I  P  E  L  R  L  R  R  S  *  Q  T  C  *  P  S  L  T  S  C  S  R  I  R  N  W  G  *  S  S  W  W  Q  L  S  C  *  L  Y  C  S  C  I  *  Y  G  R  K  C  R  G  G  V  H  E  N  D  Q  R  I  S  S  S  L  R  A  F  K  K  L  C  S  V  S  *  S   : V  *  G  R  P  T  R  C  *  R  I  L  L  T  R  N  T  S  *  S  Y  *  W  R  N  Y  F  T  V  C  H  V  D  M  A  T  S  S  G  *  R  *  S  L  N  L  L  *  E  G  S  T  S  F  S  T  R  Q  :  R  R  A  C  C  I  C  *  V  S  L  A  N  R  G  R  *  R  R  R  R  R  *  N  V  R  *  S  Q  W  S  A  T  S  A  R  S  R  L  K  P  D  V  K  *  I  S  Q  S  R  F  *  F  I  F  *  F  L  K  L  F  A  L  S  K  D  L  E  I  S  L  V  V  E  D  Q  L  F  W  E  N  F  *  M  V  S  V  V  *  *  A  I  K  C  A  Q  *  C  *  I  D  F  V  Q  C  Y  F  W  E  *  *  *  Q  L  K  E  L  N  E  K  L  N  S  D  S  A  L  *  *  Y  T  V  L  Y  L  Y  L  Y  T  T  F  T  N  D   </first_frame>
            <second_frame>  K  K  N  L  D  N  T  P  T  C  K  I  P  *  S  S  H  K  I  I  *  K  S  L  I  *  W  E  F  K  R  V  V  L  K  Y  F  N  F  F  *  S  W  K  T  V  L  S  S  K  V  T  F  L  S  C  H  K  Q  E  S  S  K  C  C  L  K  N  H  H  F  V  Y  I  I  L  K  M  G  L  M  R  *  R  K  I  K  I  W  L  G  L  *  Q  *  G  I  L  Y  Q  I  *  V  V  V  I  S  V  L  G  K  R  G  W  G  *  L  R  K  M  R  M  K  M  R  K  K  G  F  F  M  R  L  M  S  *  D  L  K  R  V  N  K  *  L  V  Q  S  I  M  V  G  L  S  L  N  L  *  I  L  M  E  M  E  M  L  R  N  I  I  K  G  F  L  K  K  I  P  V  T  L  C  F  *  G  I  M  L  N  F  C  S :   C  L  E  M  L  Y  L  *  A  E  G  L  A  E  T  T  S  L  S  L  *  D  K  G  K  :  S  K  G  D  L  P  G  A  E  H  Y  Y  F  Q  A  T  L  A  D  P  K  D  G  D  T  L  S  Q  Y  A  K  L  V  W  E  L  H  Q  D  K  D  R  A  S  D  Y  F  E  R  A  V  R  T  A  P  E  N  S :   H  V  L  G  A  Y  A  S  F  L  W  D  I  T  D  D  E  S  E  D  E  M  N  T  Q  S  D  K  T  K  :  I  E  E  S  G  E  A  T  V  S  R  N  L  D  Y  E  E  A  D  R  P  V  S  P  P  L  H  L  A  A  G  L  G  I  G  V  N  L  V  G  G  S  S  P  V  D  Y  T  A  A  V  S  D  M  D  G  N  A  E  E  E  Y  M  R  M  I  K  E  Y  P  H  H  S  V  L  L  R  N  Y  A  Q  F  L  S  Q  :  S  K  G  D  L  L  G  A  E  E  Y  Y  S  H  A  I  L  A  D  P  T  D  G  E  T  I  S  Q  Y  A  M  L  I  W  Q  L  H  Q  D  K  D  K  A  S  T  Y  F  K  R  A  V  Q  A  S  P  Q  D  S :   D  V  L  A  A  Y  A  R  F  L  W  Q  T  E  E  D  E  D  G  E  E  D  E  T  L  G  D  H  N  G  A  P  L  L  Q  G  V  A  *  S  L  M  S  N  E  F  H  N  P  D  S  N  S  Y  F  S  F  S  S  F  S  H  Y  L  K  T  W  R  F  L  L  L  W  R  I  N  Y  S  G  K  I  F  R  W  *  V  L  F  N  E  Q  *  N  V  H  N  N  V  K  L  T  L  Y  N  V  I  F  G  N  N  D  S  S  *  K  S  *  M  K  N  *  I  V  T  L  H  C  S  N  I  L  F  C  T  S  I  C  I  Q  H  S  Q  M  T  </second_frame>
            <third_frame>   K  R  T  W  I  I  L  L  L  V  K  S  H  S  L  H  I  K  S  F  R  R  A  *  F  D  G  N  L  K  G  L  S  *  N  T  S  I  F  S  N  L  G  K  L  Y  *  A  Q  R  *  H  F  Y  L  V  I  S  K  K  V  Q  N  V  A  *  R  T  I  I  L  Y  I  *  Y  *  R  W  G  *  *  D  E  G  K  S  R  F  G  *  V  C  D  N  R  G  Y  C  I  R  Y  R  *  *  *  F  Q  F  W  E  K  G  D  G  V  D  *  G  R  *  E  *  R  *  G  K  K  G  F  L  *  G  *  *  A  R  I  *  R  E  *  T  S  N  *  F  K  V  S  W  W  G  *  V  *  T  F  R  F  *  W  K  W  R  C  *  G  I  L  *  K  G  S  *  R  R  S  L  *  P  F  V  F  E  E  L  C  S  T  F  A   : V  A  *  K  C  F  I  Y  K  P  R  V  *  R  K  Q  P  L  Y  L  Y  E  I  K  E  S :   L  R  E  I  F  L  E  L  N  T  I  T  F  K  L  H  *  L  I  Q  K  M  E  I  P  C  H  S  M  L  S  *  Y  G  S  C  T  K  I  K  I  E  H  Q  I  T  L  N  V  Q  Y  V  L  L  L  R  T   : A  M  F  L  E  H  M  L  V  S  S  G  T  L  L  T  M  K  V  R  M  K  *  T  H  R  V  I  R  L  R :   L  R  K  V  G  K  L  L  Y  P  G  T  *  I  T  K  K  L  T  D  L  L  A  L  P  Y  I  L  Q  Q  D  *  E  L  G  L  I  *  L  V  A  A  L  L  L  I  I  L  Q  L  Y  L  I  W  T  E  M  P  R  R  S  T  *  E  *  S  K  N  I  L  I  T  P  C  F  *  E  T  M  L  S  F  L  V  S :   L  R  E  T  Y  *  V  L  K  N  I  T  H  T  Q  Y  *  L  I  L  L  M  E  K  L  F  H  S  M  P  C  *  Y  G  N  F  I  R  I  K  I  K  P  Q  P  T  L  R  G  Q  Y  K  L  L  H  K  T   : A  T  C  L  L  H  M  L  G  F  S  G  K  Q  R  K  M  K  T  E  K  K  M  K  R  *  V  I  T  M  E  R  H  F  C  K  E  S  P  K  A  *  C  Q  M  N  F  T  I  Q  I  L  I  H  I  L  V  S  Q  A  F  R  I  I  *  R  L  G  D  F  S  C  C  G  G  S  T  I  L  G  K  F  L  D  G  K  C  C  L  M  S  N  K  M  C  T  I  M  L  N  *  L  C  T  M  L  F  L  G  I  M  I  A  V  E  R  V  E  *  K  I  K  *  *  L  C  I  V  V  I  Y  C  F  V  P  L  F  V  Y  N  I  H  K  *  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0177O17.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="776" stop="787"/>
                    <exon start="1937" stop="2109"/>
                    <exon start="2493" stop="2583"/>
                    <exon start="2663" stop="2917"/>
                    <exon start="3405" stop="3577"/>
                    <exon start="3952" stop="4069"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>819</number_coding_nucleotides>
                  <number_encoded_amino_acids>273</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DKGKSKGDLPGAEHYYFQATLADPKDGDTLSQYAKLVWELHQDKDRASDYFERAVRTAPENSHVLGAYASFLWDITDDESEDEMNTQSDKTKIEESGEATVSRNLDYEEADRPVSPPLHLAAGLGIGVNLVGGSSPVDYTAAVSDMDGNAEEEYMRMIKEYPHHSVLLRNYAQFLSQSKGDLLGAEEYYSHAILADPTDGETISQYAMLIWQLHQDKDKASTYFKRAVQASPQDSDVLAAYARFLWQTEEDEDGEEDETLGDHNGAPLLQGVA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0177O17.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="215" stop="616"/>
                    <exon start="712" stop="780"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>468</number_coding_nucleotides>
                  <number_encoded_amino_acids>156</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ARKFKMLPKEPSFCIYNTEDGVDEMKENQDLVRSVTIGDIVSDIGSSDFSFGKKGMGLIEEDENEDEEKRVFYEVNELGFEESEQVISSKYHGGVEFEPLDFDGNGDVEEYYKRVLKEDPCNPLFLRNYAQLLQLLRNALFISRGSSGNNLSISMR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="11386" PGL_stop="4799"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11386" e_stop="11027"/>
            <exon e_start="10047" e_stop="9913"/>
            <exon e_start="8763" e_stop="8457"/>
            <exon e_start="7774" e_stop="7509"/>
            <exon e_start="7402" e_stop="7219"/>
            <exon e_start="7096" e_stop="6975"/>
            <exon e_start="6887" e_stop="6822"/>
            <exon e_start="6491" e_stop="6413"/>
            <exon e_start="5254" e_stop="4799"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.906" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.932" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.991" e_score="0.973"/>
          <exon-intron don_prob="0.999" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="0.985"/>
          <exon-intron don_prob="0.986" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="11386" e_stop="11027" e_length="360"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.961">
            <gDNA_intron_boundary i_start="11026" i_stop="10048" i_length="979"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="10047" e_stop="9913" e_length="135"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.989">
            <gDNA_intron_boundary i_start="9912" i_stop="8764" i_length="1149"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="8763" e_stop="8457" e_length="307"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.906">
            <gDNA_intron_boundary i_start="8456" i_stop="7775" i_length="682"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="7774" e_stop="7509" e_length="266"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.932">
            <gDNA_intron_boundary i_start="7508" i_stop="7403" i_length="106"/>
          </intron>
          <exon e_serial="5" e_score="0.973">
            <gDNA_exon_boundary e_start="7402" e_stop="7219" e_length="184"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.991">
            <gDNA_intron_boundary i_start="7218" i_stop="7097" i_length="122"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="7096" e_stop="6975" e_length="122"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.993">
            <gDNA_intron_boundary i_start="6974" i_stop="6888" i_length="87"/>
          </intron>
          <exon e_serial="7" e_score="0.985">
            <gDNA_exon_boundary e_start="6887" e_stop="6822" e_length="66"/>
          </exon>
          <intron i_serial="7" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="6821" i_stop="6492" i_length="330"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="6491" e_stop="6413" e_length="79"/>
          </exon>
          <intron i_serial="8" don_prob="0.986" acc_prob="0.998">
            <gDNA_intron_boundary i_start="6412" i_stop="5255" i_length="1158"/>
          </intron>
          <exon e_serial="9" e_score="0.998">
            <gDNA_exon_boundary e_start="5254" e_stop="4799" e_length="456"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11386" stop="11027"/>
              <exon start="10047" stop="9913"/>
              <exon start="8763" stop="8457"/>
              <exon start="7774" stop="7509"/>
              <exon start="7402" stop="7219"/>
              <exon start="7096" stop="6975"/>
              <exon start="6887" stop="6822"/>
              <exon start="6491" stop="6413"/>
              <exon start="5254" stop="4799"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317342" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8529" stop="8457"/>
              <exon start="7774" stop="7509"/>
              <exon start="7402" stop="7219"/>
              <exon start="7096" stop="6975"/>
              <exon start="6887" stop="6822"/>
              <exon start="6491" stop="6413"/>
              <exon start="5254" stop="4832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317341" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCAGCAGCTCTCACTCTTTCTCTCTCTAGAACCAGTGGTCTCAAGCGGTCACTCCATTTTCTCTCTCTAGAAATTGTAGAGTCAGTGACGAACGAATTCAGTGCTATTTACTGCTTGTGGAGTGTAATGGGAGAAGACCCTGTTGCTGCTTTTTTGCTTGCGGCGCAAATGTGAATGCTGTGAAAATCTAGGGTTTTTTTTTGGGGGGGATTTTAGATCTTTTGGTAGATCTAGTTTTTCTTGAGATTCTCACTCTAATTGGATTGACGAGTTCATTTCTACCGCTGTTTAAGCTGCCGCCGCCACCGGGTTTTACGAAATGGCGACGCCTTTTCACTTGCCAGTCACTGCTGCTCAG : GTGGGGACATACTTCGTGGGCCAGTATTATCAGATGTTACAGACCCAACCGGATTTTGTTCACCAGTTCTACAGTGATGCTAGTACTGTGCTTCGAATTGATTCCAGCACCAGAGAGACTGCTTCAGGAATGCTG : CAAATTCACACCCTTGTCACGTCGCTACAGTACACTGGAATAGAGATAAAAACACTCCATTCCTTGGAATCATGGAATGGTGGTGTCCTTGTGATGGTTTCAGGTTCTGTCAGTGTGAAAGGTATCAATAGGAGTAGGAAGTTCGTTCAATCATTTTTCCTTGCACCCCAGGAAAAAGGATACTTTGTCCTCAATGATATCTTTCACTATGTTGATGAGGAGCAAATTCTTCAGCAACCATTGGCCTATCTAGCACATTCGAACCTTGATTCAAAGCTGAATGTTTCCAATGCACTTCAGGAGCAAG : TGCCCAACTACATGTTTGGTGGAGAAATCCAAGCAAGGGAGTTTGTTGATGCTCCTAAAATTGAAGATAACGGGCCAGTCAATAACTATAGTTTTCCGGAGGAACGGCTTCAGCATGTCTCTGAAGCTGAGAATATCCTTGAAGATAATTTTGCGGTTCAGTCGAACGGCCCACTTCAGAGTACAATTAATGCAGTACAAGACCATTTATCCTGCCCTGTTGAGGAACCTGTTGCAGAGCCCCAAAAGCATACTTATGCTTCTATT : CTACAAGTTACTAAAGGGAATTCTGCACAAGGACTGGCACAGTCTTCTCTCAACAAATCTACACCTCCTCCTTCAGAGTGGCAACATGTGCCAGAGCCTCCTGCTTTGCCATCAGTTCATTCGACTAATACTATTGAGAGGTATACTGAGGCAACAGAAGAGGCTTCAGCTGTTGAAGATGAAG : TTGAAGTCAAGTCTGTATATGTCAAAAATGTTCCTACCACAATGGCTGCTTATGAAATTGAGGAGGAATTCAAAAAGTTTGGTAAATTAAAGCCTGATGCTGTTGCCATTAGAACGCGAAAG : GACATTGATGTATGCTATGCATTTGTCGAATTTGAAGATGTAACTGGGGTTCAGAATGCAATTGAG : GCATCTACTGTTCAGATTGGTGGACACCAGTTGTACATTGAAGGAAGGAGACCGAACAGAAATAACTTAATTCGAGGAA : GAGGAAGGGGTAGAGGCAGAGTTAGCTACTCCATGGACGGAAGGGGGCGCTATGGTGGCCGTGGTTTTGGGAGAGGTGGTCAAGACGGAGGTGACCGTGATTATGGCAGATCAAGGGGAAATGGTTATTATAGACAAACTCCTCGGCAGGAAAGAGCTTACCCTAGCAATCAGCAAAGCTTGAGAAATGAGCAATACTCATGGGAATAAGCTGGAAGTTGAATTCATGAAGGACAAACAATACACCTTCAGTACAAGCCATGTTGCCAACAGCTTTTTTGTCTTCATAGTTCTCCAAAACATTAGTATACTTTGAGAAGCATCAAAATTTAGATTTGTGGAAGGAAGCATCCCTAATTCATATAATTTTTTTGGCAGAAATAGCAAGTGTTGGTTTTCAGTACATGAATAGACTTTTACTTGAAGGATTATTTATGCAGTTCTGACCTGCTAGTCG</gDNA_template>
            <first_frame> F  Q  Q  L  S  L  F  L  S  L  E  P  V  V  S  S  G  H  S  I  F  S  L  *  K  L  *  S  Q  *  R  T  N  S  V  L  F  T  A  C  G  V  *  W  E  K  T  L  L  L  L  F  C  L  R  R  K  C  E  C  C  E  N  L  G  F  F  F  G  G  D  F  R  S  F  G  R  S  S  F  S  *  D  S  H  S  N  W  I  D  E  F  I  S  T  A  V  *  A  A  A  A  T  G  F  Y  E  M  A  T  P  F  H  L  P  V  T  A  A  Q  :  V  G  T  Y  F  V  G  Q  Y  Y  Q  M  L  Q  T  Q  P  D  F  V  H  Q  F  Y  S  D  A  S  T  V  L  R  I  D  S  S  T  R  E  T  A  S  G  M  L  :  Q  I  H  T  L  V  T  S  L  Q  Y  T  G  I  E  I  K  T  L  H  S  L  E  S  W  N  G  G  V  L  V  M  V  S  G  S  V  S  V  K  G  I  N  R  S  R  K  F  V  Q  S  F  F  L  A  P  Q  E  K  G  Y  F  V  L  N  D  I  F  H  Y  V  D  E  E  Q  I  L  Q  Q  P  L  A  Y  L  A  H  S  N  L  D  S  K  L  N  V  S  N  A  L  Q  E  Q   : V  P  N  Y  M  F  G  G  E  I  Q  A  R  E  F  V  D  A  P  K  I  E  D  N  G  P  V  N  N  Y  S  F  P  E  E  R  L  Q  H  V  S  E  A  E  N  I  L  E  D  N  F  A  V  Q  S  N  G  P  L  Q  S  T  I  N  A  V  Q  D  H  L  S  C  P  V  E  E  P  V  A  E  P  Q  K  H  T  Y  A  S  I  :  L  Q  V  T  K  G  N  S  A  Q  G  L  A  Q  S  S  L  N  K  S  T  P  P  P  S  E  W  Q  H  V  P  E  P  P  A  L  P  S  V  H  S  T  N  T  I  E  R  Y  T  E  A  T  E  E  A  S  A  V  E  D  E   : V  E  V  K  S  V  Y  V  K  N  V  P  T  T  M  A  A  Y  E  I  E  E  E  F  K  K  F  G  K  L  K  P  D  A  V  A  I  R  T  R  K  :  D  I  D  V  C  Y  A  F  V  E  F  E  D  V  T  G  V  Q  N  A  I  E  :  A  S  T  V  Q  I  G  G  H  Q  L  Y  I  E  G  R  R  P  N  R  N  N  L  I  R  G   : R  G  R  G  R  G  R  V  S  Y  S  M  D  G  R  G  R  Y  G  G  R  G  F  G  R  G  G  Q  D  G  G  D  R  D  Y  G  R  S  R  G  N  G  Y  Y  R  Q  T  P  R  Q  E  R  A  Y  P  S  N  Q  Q  S  L  R  N  E  Q  Y  S  W  E  *  A  G  S  *  I  H  E  G  Q  T  I  H  L  Q  Y  K  P  C  C  Q  Q  L  F  C  L  H  S  S  P  K  H  *  Y  T  L  R  S  I  K  I  *  I  C  G  R  K  H  P  *  F  I  *  F  F  W  Q  K  *  Q  V  L  V  F  S  T  *  I  D  F  Y  L  K  D  Y  L  C  S  S  D  L  L  V  </first_frame>
            <second_frame>  F  S  S  S  H  S  F  S  L  *  N  Q  W  S  Q  A  V  T  P  F  S  L  S  R  N  C  R  V  S  D  E  R  I  Q  C  Y  L  L  L  V  E  C  N  G  R  R  P  C  C  C  F  F  A  C  G  A  N  V  N  A  V  K  I  *  G  F  F  L  G  G  I  L  D  L  L  V  D  L  V  F  L  E  I  L  T  L  I  G  L  T  S  S  F  L  P  L  F  K  L  P  P  P  P  G  F  T  K  W  R  R  L  F  T  C  Q  S  L  L  L  R :   W  G  H  T  S  W  A  S  I  I  R  C  Y  R  P  N  R  I  L  F  T  S  S  T  V  M  L  V  L  C  F  E  L  I  P  A  P  E  R  L  L  Q  E  C  C :   K  F  T  P  L  S  R  R  Y  S  T  L  E  *  R  *  K  H  S  I  P  W  N  H  G  M  V  V  S  L  *  W  F  Q  V  L  S  V  *  K  V  S  I  G  V  G  S  S  F  N  H  F  S  L  H  P  R  K  K  D  T  L  S  S  M  I  S  F  T  M  L  M  R  S  K  F  F  S  N  H  W  P  I  *  H  I  R  T  L  I  Q  S  *  M  F  P  M  H  F  R  S  K  :  C  P  T  T  C  L  V  E  K  S  K  Q  G  S  L  L  M  L  L  K  L  K  I  T  G  Q  S  I  T  I  V  F  R  R  N  G  F  S  M  S  L  K  L  R  I  S  L  K  I  I  L  R  F  S  R  T  A  H  F  R  V  Q  L  M  Q  Y  K  T  I  Y  P  A  L  L  R  N  L  L  Q  S  P  K  S  I  L  M  L  L  F :   Y  K  L  L  K  G  I  L  H  K  D  W  H  S  L  L  S  T  N  L  H  L  L  L  Q  S  G  N  M  C  Q  S  L  L  L  C  H  Q  F  I  R  L  I  L  L  R  G  I  L  R  Q  Q  K  R  L  Q  L  L  K  M  K  :  L  K  S  S  L  Y  M  S  K  M  F  L  P  Q  W  L  L  M  K  L  R  R  N  S  K  S  L  V  N  *  S  L  M  L  L  P  L  E  R  E  R :   T  L  M  Y  A  M  H  L  S  N  L  K  M  *  L  G  F  R  M  Q  L  R :   H  L  L  F  R  L  V  D  T  S  C  T  L  K  E  G  D  R  T  E  I  T  *  F  E  E  :  E  E  G  V  E  A  E  L  A  T  P  W  T  E  G  G  A  M  V  A  V  V  L  G  E  V  V  K  T  E  V  T  V  I  M  A  D  Q  G  E  M  V  I  I  D  K  L  L  G  R  K  E  L  T  L  A  I  S  K  A  *  E  M  S  N  T  H  G  N  K  L  E  V  E  F  M  K  D  K  Q  Y  T  F  S  T  S  H  V  A  N  S  F  F  V  F  I  V  L  Q  N  I  S  I  L  *  E  A  S  K  F  R  F  V  E  G  S  I  P  N  S  Y  N  F  F  G  R  N  S  K  C  W  F  S  V  H  E  *  T  F  T  *  R  I  I  Y  A  V  L  T  C  *  S </second_frame>
            <third_frame>   S  A  A  L  T  L  S  L  S  R  T  S  G  L  K  R  S  L  H  F  L  S  L  E  I  V  E  S  V  T  N  E  F  S  A  I  Y  C  L  W  S  V  M  G  E  D  P  V  A  A  F  L  L  A  A  Q  M  *  M  L  *  K  S  R  V  F  F  W  G  G  F  *  I  F  W  *  I  *  F  F  L  R  F  S  L  *  L  D  *  R  V  H  F  Y  R  C  L  S  C  R  R  H  R  V  L  R  N  G  D  A  F  S  L  A  S  H  C  C  S   : G  G  D  I  L  R  G  P  V  L  S  D  V  T  D  P  T  G  F  C  S  P  V  L  Q  *  C  *  Y  C  A  S  N  *  F  Q  H  Q  R  D  C  F  R  N  A   : A  N  S  H  P  C  H  V  A  T  V  H  W  N  R  D  K  N  T  P  F  L  G  I  M  E  W  W  C  P  C  D  G  F  R  F  C  Q  C  E  R  Y  Q  *  E  *  E  V  R  S  I  I  F  P  C  T  P  G  K  R  I  L  C  P  Q  *  Y  L  S  L  C  *  *  G  A  N  S  S  A  T  I  G  L  S  S  T  F  E  P  *  F  K  A  E  C  F  Q  C  T  S  G  A  S :   A  Q  L  H  V  W  W  R  N  P  S  K  G  V  C  *  C  S  *  N  *  R  *  R  A  S  Q  *  L  *  F  S  G  G  T  A  S  A  C  L  *  S  *  E  Y  P  *  R  *  F  C  G  S  V  E  R  P  T  S  E  Y  N  *  C  S  T  R  P  F  I  L  P  C  *  G  T  C  C  R  A  P  K  A  Y  L  C  F  Y   : S  T  S  Y  *  R  E  F  C  T  R  T  G  T  V  F  S  Q  Q  I  Y  T  S  S  F  R  V  A  T  C  A  R  A  S  C  F  A  I  S  S  F  D  *  Y  Y  *  E  V  Y  *  G  N  R  R  G  F  S  C  *  R  *  S :   *  S  Q  V  C  I  C  Q  K  C  S  Y  H  N  G  C  L  *  N  *  G  G  I  Q  K  V  W  *  I  K  A  *  C  C  C  H  *  N  A  K   : G  H  *  C  M  L  C  I  C  R  I  *  R  C  N  W  G  S  E  C  N  *   : G  I  Y  C  S  D  W  W  T  P  V  V  H  *  R  K  E  T  E  Q  K  *  L  N  S  R  K :   R  K  G  *  R  Q  S  *  L  L  H  G  R  K  G  A  L  W  W  P  W  F  W  E  R  W  S  R  R  R  *  P  *  L  W  Q  I  K  G  K  W  L  L  *  T  N  S  S  A  G  K  S  L  P  *  Q  S  A  K  L  E  K  *  A  I  L  M  G  I  S  W  K  L  N  S  *  R  T  N  N  T  P  S  V  Q  A  M  L  P  T  A  F  L  S  S  *  F  S  K  T  L  V  Y  F  E  K  H  Q  N  L  D  L  W  K  E  A  S  L  I  H  I  I  F  L  A  E  I  A  S  V  G  F  Q  Y  M  N  R  L  L  L  E  G  L  F  M  Q  F  *  P  A  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0177O17.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11092" stop="11027"/>
                    <exon start="10047" stop="9913"/>
                    <exon start="8763" stop="8457"/>
                    <exon start="7774" stop="7509"/>
                    <exon start="7402" stop="7219"/>
                    <exon start="7096" stop="6975"/>
                    <exon start="6887" stop="6822"/>
                    <exon start="6491" stop="6413"/>
                    <exon start="5254" stop="5046"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1431</number_coding_nucleotides>
                  <number_encoded_amino_acids>477</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AAAATGFYEMATPFHLPVTAAQVGTYFVGQYYQMLQTQPDFVHQFYSDASTVLRIDSSTRETASGMLQIHTLVTSLQYTGIEIKTLHSLESWNGGVLVMVSGSVSVKGINRSRKFVQSFFLAPQEKGYFVLNDIFHYVDEEQILQQPLAYLAHSNLDSKLNVSNALQEQVPNYMFGGEIQAREFVDAPKIEDNGPVNNYSFPEERLQHVSEAENILEDNFAVQSNGPLQSTINAVQDHLSCPVEEPVAEPQKHTYASILQVTKGNSAQGLAQSSLNKSTPPPSEWQHVPEPPALPSVHSTNTIERYTEATEEASAVEDEVEVKSVYVKNVPTTMAAYEIEEEFKKFGKLKPDAVAIRTRKDIDVCYAFVEFEDVTGVQNAIEASTVQIGGHQLYIEGRRPNRNNLIRGRGRGRGRVSYSMDGRGRYGGRGFGRGGQDGGDRDYGRSRGNGYYRQTPRQERAYPSNQQSLRNEQYSWE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="15323" PGL_stop="12741"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15323" e_stop="14876"/>
            <exon e_start="13810" e_stop="13709"/>
            <exon e_start="13597" e_stop="13325"/>
            <exon e_start="13136" e_stop="12741"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.918" acc_prob="0.730" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="15323" e_stop="14876" e_length="448"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="14875" i_stop="13811" i_length="1065"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="13810" e_stop="13709" e_length="102"/>
          </exon>
          <intron i_serial="2" don_prob="0.918" acc_prob="0.730">
            <gDNA_intron_boundary i_start="13708" i_stop="13598" i_length="111"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="13597" e_stop="13325" e_length="273"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="13324" i_stop="13137" i_length="188"/>
          </intron>
          <exon e_serial="4" e_score="0.982">
            <gDNA_exon_boundary e_start="13136" e_stop="12741" e_length="396"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15323" stop="14876"/>
              <exon start="13810" stop="13709"/>
              <exon start="13597" stop="13403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U324142" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13477" stop="13325"/>
              <exon start="13136" stop="12741"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U329827" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCCGATCAAAAATTGAAATTCCGGCGAAATCATGGCGGCCGCAGCTGCCACAGCAATAGCTTCTTCGTTTTCCAGTCTTCATTCTATACGTACTAAATCAAATTTGACTAATTCCGATCATCTACTTAAAATTTCATCAGCTAGAACTCCAAATCTAACTTTAATTTCATCGTCGGTAAGTGAACTGACGTCGATTTACAAGAAGTGGAGGGTATTGCCCAGGCTGTCAGCTGCGGTGGCGCAAGAGGAGGCGGAAGCGGCGGTGACGGAGGAGGAGGTGCCGGCGCCGGCGGTGGATGAGGAGGAGAAGGTAGGAGAGGGTTCCGATGGGAGTAGTGAAAGTGAAGGTGTTAATACTAAGCTTTATTTTGGGAATTTGCCGTATCTTTGTGATAGTGCACAACTTGCTGGGATTGTTCAAGACTATGCTAGTCCTGAACTTGTTGAG : GTTCTTTATGATAGGGACACAGGTAAAAGCAGAGGATTTGCATTTGTGACAATGAGTACTCTTGAAGATTGCAAGACAGTCGTCGAAAATCTAGATGGAAGA : GAGTATGGTGGCAGAACCCTAAGGGTGAATTTCTCGGATAAGCCTAAACCAAAAGAACCACTTTACCCCGAAACAGAACACAAACTCTTTGTTGGTAATTTGGCGTGGTCAGTCTCATCTGAAAGTTTAGCGCAAGCATTTCAAGAATATGGAACTGTTGTTGGTGCTAGGGTACTGTATGATGGTGAGACCGGGAGATCTCGTGGCTACGGTTTTGTGAGCTTTGAGACTAGAGAAGAAATGGAGAATGCTCTTAACAATCTCAATGGAGTG : GAATTGGATGGAAGGGCATTGCGAGTTAGCTTAGCACAAGGGAAGAAACAATAAGATGGGACAAAATTCTTTGTATATTAGTTGTATAAGTTGAAATTTGCCATCTACATATGAACAATTTTAGTTCATGGATTAAGATGGCTAAAAAGGCTTTTACTAGGTCAAAAGGAGATGTAACTATTTGTATTACATCACACATACAATGAGCTTTCTTTTTTCTTCTTCTTCTCTTTCCTTTATTTTATGATTTAGAGAGAGAATGTAATTGTTTCTATCATATTTTAGAAAACTATTGAGTCATTTAGTACAAGCAACTTCACTAGATAATGCTTGGGACCTATTTCTTGTAGAAATATACTAAGTAAATAGGAATATATTTTCAATTATGGAGCCTAA</gDNA_template>
            <first_frame> S  D  Q  K  L  K  F  R  R  N  H  G  G  R  S  C  H  S  N  S  F  F  V  F  Q  S  S  F  Y  T  Y  *  I  K  F  D  *  F  R  S  S  T  *  N  F  I  S  *  N  S  K  S  N  F  N  F  I  V  G  K  *  T  D  V  D  L  Q  E  V  E  G  I  A  Q  A  V  S  C  G  G  A  R  G  G  G  S  G  G  D  G  G  G  G  A  G  A  G  G  G  *  G  G  E  G  R  R  G  F  R  W  E  *  *  K  *  R  C  *  Y  *  A  L  F  W  E  F  A  V  S  L  *  *  C  T  T  C  W  D  C  S  R  L  C  *  S  *  T  C  *   : G  S  L  *  *  G  H  R  *  K  Q  R  I  C  I  C  D  N  E  Y  S  *  R  L  Q  D  S  R  R  K  S  R  W  K   : R  V  W  W  Q  N  P  K  G  E  F  L  G  *  A  *  T  K  R  T  T  L  P  R  N  R  T  Q  T  L  C  W  *  F  G  V  V  S  L  I  *  K  F  S  A  S  I  S  R  I  W  N  C  C  W  C  *  G  T  V  *  W  *  D  R  E  I  S  W  L  R  F  C  E  L  *  D  *  R  R  N  G  E  C  S  *  Q  S  Q  W  S   : G  I  G  W  K  G  I  A  S  *  L  S  T  R  E  E  T  I  R  W  D  K  I  L  C  I  L  V  V  *  V  E  I  C  H  L  H  M  N  N  F  S  S  W  I  K  M  A  K  K  A  F  T  R  S  K  G  D  V  T  I  C  I  T  S  H  I  Q  *  A  F  F  F  L  L  L  L  F  P  L  F  Y  D  L  E  R  E  C  N  C  F  Y  H  I  L  E  N  Y  *  V  I  *  Y  K  Q  L  H  *  I  M  L  G  T  Y  F  L  *  K  Y  T  K  *  I  G  I  Y  F  Q  L  W  S  L  </first_frame>
            <second_frame>  P  I  K  N  *  N  S  G  E  I  M  A  A  A  A  A  T  A  I  A  S  S  F  S  S  L  H  S  I  R  T  K  S  N  L  T  N  S  D  H  L  L  K  I  S  S  A  R  T  P  N  L  T  L  I  S  S  S  V  S  E  L  T  S  I  Y  K  K  W  R  V  L  P  R  L  S  A  A  V  A  Q  E  E  A  E  A  A  V  T  E  E  E  V  P  A  P  A  V  D  E  E  E  K  V  G  E  G  S  D  G  S  S  E  S  E  G  V  N  T  K  L  Y  F  G  N  L  P  Y  L  C  D  S  A  Q  L  A  G  I  V  Q  D  Y  A  S  P  E  L  V  E  :  V  L  Y  D  R  D  T  G  K  S  R  G  F  A  F  V  T  M  S  T  L  E  D  C  K  T  V  V  E  N  L  D  G  R  :  E  Y  G  G  R  T  L  R  V  N  F  S  D  K  P  K  P  K  E  P  L  Y  P  E  T  E  H  K  L  F  V  G  N  L  A  W  S  V  S  S  E  S  L  A  Q  A  F  Q  E  Y  G  T  V  V  G  A  R  V  L  Y  D  G  E  T  G  R  S  R  G  Y  G  F  V  S  F  E  T  R  E  E  M  E  N  A  L  N  N  L  N  G  V  :  E  L  D  G  R  A  L  R  V  S  L  A  Q  G  K  K  Q  *  D  G  T  K  F  F  V  Y  *  L  Y  K  L  K  F  A  I  Y  I  *  T  I  L  V  H  G  L  R  W  L  K  R  L  L  L  G  Q  K  E  M  *  L  F  V  L  H  H  T  Y  N  E  L  S  F  F  F  F  F  S  F  L  Y  F  M  I  *  R  E  N  V  I  V  S  I  I  F  *  K  T  I  E  S  F  S  T  S  N  F  T  R  *  C  L  G  P  I  S  C  R  N  I  L  S  K  *  E  Y  I  F  N  Y  G  A  * </second_frame>
            <third_frame>   R  S  K  I  E  I  P  A  K  S  W  R  P  Q  L  P  Q  Q  *  L  L  R  F  P  V  F  I  L  Y  V  L  N  Q  I  *  L  I  P  I  I  Y  L  K  F  H  Q  L  E  L  Q  I  *  L  *  F  H  R  R  *  V  N  *  R  R  F  T  R  S  G  G  Y  C  P  G  C  Q  L  R  W  R  K  R  R  R  K  R  R  *  R  R  R  R  C  R  R  R  R  W  M  R  R  R  R  *  E  R  V  P  M  G  V  V  K  V  K  V  L  I  L  S  F  I  L  G  I  C  R  I  F  V  I  V  H  N  L  L  G  L  F  K  T  M  L  V  L  N  L  L  R :   F  F  M  I  G  T  Q  V  K  A  E  D  L  H  L  *  Q  *  V  L  L  K  I  A  R  Q  S  S  K  I  *  M  E  E :   S  M  V  A  E  P  *  G  *  I  S  R  I  S  L  N  Q  K  N  H  F  T  P  K  Q  N  T  N  S  L  L  V  I  W  R  G  Q  S  H  L  K  V  *  R  K  H  F  K  N  M  E  L  L  L  V  L  G  Y  C  M  M  V  R  P  G  D  L  V  A  T  V  L  *  A  L  R  L  E  K  K  W  R  M  L  L  T  I  S  M  E  W :   N  W  M  E  G  H  C  E  L  A  *  H  K  G  R  N  N  K  M  G  Q  N  S  L  Y  I  S  C  I  S  *  N  L  P  S  T  Y  E  Q  F  *  F  M  D  *  D  G  *  K  G  F  Y  *  V  K  R  R  C  N  Y  L  Y  Y  I  T  H  T  M  S  F  L  F  S  S  S  S  L  S  F  I  L  *  F  R  E  R  M  *  L  F  L  S  Y  F  R  K  L  L  S  H  L  V  Q  A  T  S  L  D  N  A  W  D  L  F  L  V  E  I  Y  *  V  N  R  N  I  F  S  I  M  E  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0177O17.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15307" stop="14876"/>
                    <exon start="13810" stop="13709"/>
                    <exon start="13597" stop="13325"/>
                    <exon start="13136" stop="13083"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>858</number_coding_nucleotides>
                  <number_encoded_amino_acids>286</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSGEIMAAAAATAIASSFSSLHSIRTKSNLTNSDHLLKISSARTPNLTLISSSVSELTSIYKKWRVLPRLSAAVAQEEAEAAVTEEEVPAPAVDEEEKVGEGSDGSSESEGVNTKLYFGNLPYLCDSAQLAGIVQDYASPELVEVLYDRDTGKSRGFAFVTMSTLEDCKTVVENLDGREYGGRTLRVNFSDKPKPKEPLYPETEHKLFVGNLAWSVSSESLAQAFQEYGTVVGARVLYDGETGRSRGYGFVSFETREEMENALNNLNGVELDGRALRVSLAQGKKQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="17477" PGL_stop="16075"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17477" e_stop="17245"/>
            <exon e_start="16616" e_stop="16075"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="17477" e_stop="17245" e_length="233"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="17244" i_stop="16617" i_length="628"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="16616" e_stop="16075" e_length="542"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17477" stop="17245"/>
              <exon start="16616" stop="16075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U312369" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTAATTTCACTTCTTATATATCCTTTATTTTATTACTACAAGTTTGGAAAAATATTTAACATTATGGGTGTCACTACCTATACACATGAAGACACAAGCACAGTGTCTCCTAATAGGTTGTTCAAAGCTTTGGTTATTGATGGTGACAATCTTATTCCAAAATTGATGCCAAATGTTAAGAATGTTGAGACTGAGGGAGATGGAAGCATTAAGAAGATAAATTTTGTTGAAG : GTGGTCCAATAAAGTATTTGAAGCACAAGATTCATGCAATTGATGACAAGAATTTGGTAACAAAATATTCACTTATAGAAGGTGATGTTCTTGGAGACAAATTGGAATCAATTACCCATGATGTCAAATTTGAACCTGCTGGAAATGGAGGTTGTGTTTGCAAGACTAAAACTGAGTACCACACAAAAGGTGACTATGTTTTAAAGGATGAAGAACACAATGAAGGAAAAAAACATGCCATGGAACTTTTCAAGGCTGTCGAAGATTACCTCCTCGCTAATCCTTCCATCTACGCTTAAATGATGAAAAAAGAATCAGACTTGCACGTATCTGAATTGAAGAGTCATACTAAGGGGTTTGAGTTTTAGTAGTTTTTATACTTATTTTGTTGTTGTTGTTGTAGAGTGTGTGTTCTTTCCAATTTCTATATAATAATAATGTCATGGAAAGAACTTTGAATAAGATAAGACAAGCTTTAGTTATGAAAAGTTTGTACTAAACATAAAATGTGTTGTTCAAATATATATGATATGATTAGATTT</gDNA_template>
            <first_frame> I  N  F  T  S  Y  I  S  F  I  L  L  L  Q  V  W  K  N  I  *  H  Y  G  C  H  Y  L  Y  T  *  R  H  K  H  S  V  S  *  *  V  V  Q  S  F  G  Y  *  W  *  Q  S  Y  S  K  I  D  A  K  C  *  E  C  *  D  *  G  R  W  K  H  *  E  D  K  F  C  *  R :   W  S  N  K  V  F  E  A  Q  D  S  C  N  *  *  Q  E  F  G  N  K  I  F  T  Y  R  R  *  C  S  W  R  Q  I  G  I  N  Y  P  *  C  Q  I  *  T  C  W  K  W  R  L  C  L  Q  D  *  N  *  V  P  H  K  R  *  L  C  F  K  G  *  R  T  Q  *  R  K  K  T  C  H  G  T  F  Q  G  C  R  R  L  P  P  R  *  S  F  H  L  R  L  N  D  E  K  R  I  R  L  A  R  I  *  I  E  E  S  Y  *  G  V  *  V  L  V  V  F  I  L  I  L  L  L  L  L  *  S  V  C  S  F  Q  F  L  Y  N  N  N  V  M  E  R  T  L  N  K  I  R  Q  A  L  V  M  K  S  L  Y  *  T  *  N  V  L  F  K  Y  I  *  Y  D  *  I  </first_frame>
            <second_frame>  L  I  S  L  L  I  Y  P  L  F  Y  Y  Y  K  F  G  K  I  F  N  I  M  G  V  T  T  Y  T  H  E  D  T  S  T  V  S  P  N  R  L  F  K  A  L  V  I  D  G  D  N  L  I  P  K  L  M  P  N  V  K  N  V  E  T  E  G  D  G  S  I  K  K  I  N  F  V  E   : G  G  P  I  K  Y  L  K  H  K  I  H  A  I  D  D  K  N  L  V  T  K  Y  S  L  I  E  G  D  V  L  G  D  K  L  E  S  I  T  H  D  V  K  F  E  P  A  G  N  G  G  C  V  C  K  T  K  T  E  Y  H  T  K  G  D  Y  V  L  K  D  E  E  H  N  E  G  K  K  H  A  M  E  L  F  K  A  V  E  D  Y  L  L  A  N  P  S  I  Y  A  *  M  M  K  K  E  S  D  L  H  V  S  E  L  K  S  H  T  K  G  F  E  F  *  *  F  L  Y  L  F  C  C  C  C  C  R  V  C  V  L  S  N  F  Y  I  I  I  M  S  W  K  E  L  *  I  R  *  D  K  L  *  L  *  K  V  C  T  K  H  K  M  C  C  S  N  I  Y  D  M  I  R  F </second_frame>
            <third_frame>   *  F  H  F  L  Y  I  L  Y  F  I  T  T  S  L  E  K  Y  L  T  L  W  V  S  L  P  I  H  M  K  T  Q  A  Q  C  L  L  I  G  C  S  K  L  W  L  L  M  V  T  I  L  F  Q  N  *  C  Q  M  L  R  M  L  R  L  R  E  M  E  A  L  R  R  *  I  L  L  K  :  V  V  Q  *  S  I  *  S  T  R  F  M  Q  L  M  T  R  I  W  *  Q  N  I  H  L  *  K  V  M  F  L  E  T  N  W  N  Q  L  P  M  M  S  N  L  N  L  L  E  M  E  V  V  F  A  R  L  K  L  S  T  T  Q  K  V  T  M  F  *  R  M  K  N  T  M  K  E  K  N  M  P  W  N  F  S  R  L  S  K  I  T  S  S  L  I  L  P  S  T  L  K  *  *  K  K  N  Q  T  C  T  Y  L  N  *  R  V  I  L  R  G  L  S  F  S  S  F  Y  T  Y  F  V  V  V  V  V  E  C  V  F  F  P  I  S  I  *  *  *  C  H  G  K  N  F  E  *  D  K  T  S  F  S  Y  E  K  F  V  L  N  I  K  C  V  V  Q  I  Y  M  I  *  L  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0177O17.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17476" stop="17245"/>
                    <exon start="16616" stop="16318"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>528</number_coding_nucleotides>
                  <number_encoded_amino_acids>176</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LISLLIYPLFYYYKFGKIFNIMGVTTYTHEDTSTVSPNRLFKALVIDGDNLIPKLMPNVKNVETEGDGSIKKINFVEGGPIKYLKHKIHAIDDKNLVTKYSLIEGDVLGDKLESITHDVKFEPAGNGGCVCKTKTEYHTKGDYVLKDEEHNEGKKHAMELFKAVEDYLLANPSIYA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="19532" PGL_stop="20618"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19532" e_stop="19741"/>
            <exon e_start="20049" e_stop="20618"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="19532" e_stop="19741" e_length="210"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.997">
            <gDNA_intron_boundary i_start="19742" i_stop="20048" i_length="307"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="20049" e_stop="20618" e_length="570"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19532" stop="19741"/>
              <exon start="20049" stop="20618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U315737" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAACATTTTATATATCCTCTTTTTTTTTGTCTAATAACATCATGGGTGTCACTAGCTATACACATGAAACCACAACACCAGTTGCCCCTACTAGGTTGTTCAAAGCTTTGGTTGTTGATTCTGATAATCTTATTCCTAAGTTGATGCCACAAGTTAAAAATATTGAGGCTGAGGGAGATGGAAGTATCAAAAAGATGAACTTTGTTGAAG : GTTCACCAATCAAGTACTTGAAGCACAAGATTCATGTTGTTGATGACAAGAATTTGGTGACCAAATATTCAATGATTGAAGGAGATGTTCTTGGAGACAAACTTGAGTCAATTTCCTATGACCTAAAATTTGAAGCTCATGGAAATGGAGGATGTGTTTGCAAGTCTATAACTGAGTATCACACAAAAGGTGATTATGTGTTGAAGGATGAAGAACATAATGAAGGCAAAAAACAAGCCATGGAACTTTTCAAGATTGTTGAAGCATACCTCCTCGAGAATCCTTCTGTCTACGCTTAAGTGATGAAATAAGAATCAGGTCCACACGTGTTATATAACGTGTTTGTGACATTATATAATAAAGTATATACCCTCATTAAAAAGTTAAAAATCTTTTAAATGAGATTTATGGTTTGAGTTTTCATTAATGTTATAGTGCTTTTTGTTGAGTTGTGTGTTCTTTTTCCAAGTTTATCATTGGGAATTAAGAACTCTTAATAATGTAGCAACCTTTAATTTTGCTTATCAAATACTTAATAGTAAAAAAATATTTTACTTTTCGAAAATAAAA</gDNA_template>
            <first_frame> Q  H  F  I  Y  P  L  F  F  C  L  I  T  S  W  V  S  L  A  I  H  M  K  P  Q  H  Q  L  P  L  L  G  C  S  K  L  W  L  L  I  L  I  I  L  F  L  S  *  C  H  K  L  K  I  L  R  L  R  E  M  E  V  S  K  R  *  T  L  L  K  :  V  H  Q  S  S  T  *  S  T  R  F  M  L  L  M  T  R  I  W  *  P  N  I  Q  *  L  K  E  M  F  L  E  T  N  L  S  Q  F  P  M  T  *  N  L  K  L  M  E  M  E  D  V  F  A  S  L  *  L  S  I  T  Q  K  V  I  M  C  *  R  M  K  N  I  M  K  A  K  N  K  P  W  N  F  S  R  L  L  K  H  T  S  S  R  I  L  L  S  T  L  K  *  *  N  K  N  Q  V  H  T  C  Y  I  T  C  L  *  H  Y  I  I  K  Y  I  P  S  L  K  S  *  K  S  F  K  *  D  L  W  F  E  F  S  L  M  L  *  C  F  L  L  S  C  V  F  F  F  Q  V  Y  H  W  E  L  R  T  L  N  N  V  A  T  F  N  F  A  Y  Q  I  L  N  S  K  K  I  F  Y  F  S  K  I  K </first_frame>
            <second_frame>  N  I  L  Y  I  L  F  F  F  V  *  *  H  H  G  C  H  *  L  Y  T  *  N  H  N  T  S  C  P  Y  *  V  V  Q  S  F  G  C  *  F  *  *  S  Y  S  *  V  D  A  T  S  *  K  Y  *  G  *  G  R  W  K  Y  Q  K  D  E  L  C  *  R :   F  T  N  Q  V  L  E  A  Q  D  S  C  C  *  *  Q  E  F  G  D  Q  I  F  N  D  *  R  R  C  S  W  R  Q  T  *  V  N  F  L  *  P  K  I  *  S  S  W  K  W  R  M  C  L  Q  V  Y  N  *  V  S  H  K  R  *  L  C  V  E  G  *  R  T  *  *  R  Q  K  T  S  H  G  T  F  Q  D  C  *  S  I  P  P  R  E  S  F  C  L  R  L  S  D  E  I  R  I  R  S  T  R  V  I  *  R  V  C  D  I  I  *  *  S  I  Y  P  H  *  K  V  K  N  L  L  N  E  I  Y  G  L  S  F  H  *  C  Y  S  A  F  C  *  V  V  C  S  F  S  K  F  I  I  G  N  *  E  L  L  I  M  *  Q  P  L  I  L  L  I  K  Y  L  I  V  K  K  Y  F  T  F  R  K  *   </second_frame>
            <third_frame>   T  F  Y  I  S  S  F  F  L  S  N  N  I  M  G  V  T  S  Y  T  H  E  T  T  T  P  V  A  P  T  R  L  F  K  A  L  V  V  D  S  D  N  L  I  P  K  L  M  P  Q  V  K  N  I  E  A  E  G  D  G  S  I  K  K  M  N  F  V  E   : G  S  P  I  K  Y  L  K  H  K  I  H  V  V  D  D  K  N  L  V  T  K  Y  S  M  I  E  G  D  V  L  G  D  K  L  E  S  I  S  Y  D  L  K  F  E  A  H  G  N  G  G  C  V  C  K  S  I  T  E  Y  H  T  K  G  D  Y  V  L  K  D  E  E  H  N  E  G  K  K  Q  A  M  E  L  F  K  I  V  E  A  Y  L  L  E  N  P  S  V  Y  A  *  V  M  K  *  E  S  G  P  H  V  L  Y  N  V  F  V  T  L  Y  N  K  V  Y  T  L  I  K  K  L  K  I  F  *  M  R  F  M  V  *  V  F  I  N  V  I  V  L  F  V  E  L  C  V  L  F  P  S  L  S  L  G  I  K  N  S  *  *  C  S  N  L  *  F  C  L  S  N  T  *  *  *  K  N  I  L  L  F  E  N  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0177O17.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19534" stop="19741"/>
                    <exon start="20049" stop="20347"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>504</number_coding_nucleotides>
                  <number_encoded_amino_acids>168</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TFYISSFFLSNNIMGVTSYTHETTTPVAPTRLFKALVVDSDNLIPKLMPQVKNIEAEGDGSIKKMNFVEGSPIKYLKHKIHVVDDKNLVTKYSMIEGDVLGDKLESISYDLKFEAHGNGGCVCKSITEYHTKGDYVLKDEEHNEGKKQAMELFKIVEAYLLENPSVYA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="20894" PGL_stop="21194"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20894" e_stop="21194"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="20894" e_stop="21194" e_length="301"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20894" stop="21194"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U319860" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGAGCTTAGTAATGTGGGCTTGTAACCCAAATGGGGGCATTAATGTGGTGGAATGTTGGGCTGTACCAGATGGTTGGGCTTGGTGGGCTAATTTCTGACTTGCCCTATCCAAGCTTAGAGTTGGATCATGTGGCCCAATTGAAGAAATGGACTACTTGATTCGTAAAGTGGGGCGGAATGCGTGAGGCTGGTTTCACAGAGCAACGATAAGTTTCCGCTCTAAGCGGTGGAAGGATAACGAGTCGGTGTTCTCTGAGTCCAGTAACGCCTGATGGGTTGCTCCAATTAAACCACCATTTTT</gDNA_template>
            <first_frame> R  A  *  *  C  G  L  V  T  Q  M  G  A  L  M  W  W  N  V  G  L  Y  Q  M  V  G  L  G  G  L  I  S  D  L  P  Y  P  S  L  E  L  D  H  V  A  Q  L  K  K  W  T  T  *  F  V  K  W  G  G  M  R  E  A  G  F  T  E  Q  R  *  V  S  A  L  S  G  G  R  I  T  S  R  C  S  L  S  P  V  T  P  D  G  L  L  Q  L  N  H  H  F  </first_frame>
            <second_frame>  E  L  S  N  V  G  L  *  P  K  W  G  H  *  C  G  G  M  L  G  C  T  R  W  L  G  L  V  G  *  F  L  T  C  P  I  Q  A  *  S  W  I  M  W  P  N  *  R  N  G  L  L  D  S  *  S  G  A  E  C  V  R  L  V  S  Q  S  N  D  K  F  P  L  *  A  V  E  G  *  R  V  G  V  L  *  V  Q  *  R  L  M  G  C  S  N  *  T  T  I  F </second_frame>
            <third_frame>   S  L  V  M  W  A  C  N  P  N  G  G  I  N  V  V  E  C  W  A  V  P  D  G  W  A  W  W  A  N  F  *  L  A  L  S  K  L  R  V  G  S  C  G  P  I  E  E  M  D  Y  L  I  R  K  V  G  R  N  A  *  G  W  F  H  R  A  T  I  S  F  R  S  K  R  W  K  D  N  E  S  V  F  S  E  S  S  N  A  *  W  V  A  P  I  K  P  P  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0177O17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="23043" PGL_stop="23290"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23043" e_stop="23290"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="23043" e_stop="23290" e_length="248"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23043" stop="23290"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U341660" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTGGGTTGACCCAGATGGTTGGGTTCGGTAGGCTTATAGTCTGGCCTGCCCTCTCCAAGCATGGAGTTGGATCACGTGGCTTAGTCGAAAGACCAGGTTGCTTGATTCCTAAAGTGGGGTGGACTGCGTGAGGCTGGTTTCACAGAGCAACGAACAGCTTCCGCTCTGTGCAGTGGAAGGATAACGGGTCAGTGCTCAGCGAGTCCAGTTAACGCCTGATGGGCTGCTCCAACTAAACCACCACTTT</gDNA_template>
            <first_frame> V  G  L  T  Q  M  V  G  F  G  R  L  I  V  W  P  A  L  S  K  H  G  V  G  S  R  G  L  V  E  R  P  G  C  L  I  P  K  V  G  W  T  A  *  G  W  F  H  R  A  T  N  S  F  R  S  V  Q  W  K  D  N  G  S  V  L  S  E  S  S  *  R  L  M  G  C  S  N  *  T  T  T   </first_frame>
            <second_frame>  L  G  *  P  R  W  L  G  S  V  G  L  *  S  G  L  P  S  P  S  M  E  L  D  H  V  A  *  S  K  D  Q  V  A  *  F  L  K  W  G  G  L  R  E  A  G  F  T  E  Q  R  T  A  S  A  L  C  S  G  R  I  T  G  Q  C  S  A  S  P  V  N  A  *  W  A  A  P  T  K  P  P  L  </second_frame>
            <third_frame>   W  V  D  P  D  G  W  V  R  *  A  Y  S  L  A  C  P  L  Q  A  W  S  W  I  T  W  L  S  R  K  T  R  L  L  D  S  *  S  G  V  D  C  V  R  L  V  S  Q  S  N  E  Q  L  P  L  C  A  V  E  G  *  R  V  S  A  Q  R  V  Q  L  T  P  D  G  L  L  Q  L  N  H  H  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0177O17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="25974" PGL_stop="23449"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25974" e_stop="25625"/>
            <exon e_start="24233" e_stop="23449"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.894" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="25974" e_stop="25625" e_length="350"/>
          </exon>
          <intron i_serial="1" don_prob="0.894" acc_prob="0.000">
            <gDNA_intron_boundary i_start="25624" i_stop="24234" i_length="1391"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="24233" e_stop="23449" e_length="785"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25974" stop="25625"/>
              <exon start="24233" stop="23449"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U324420" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCCAATGGAATGGACTGAAGACCACCATCAATAGGGGTGATGGTGGTCTTCTTCATCTTCACTTACCCTTAAACCCCAGCCCTTCACCTCTTCTTTTCTTTACTCAAAAACCCATTTCTTTAAACCCTCTAAATCCACTCTCTTCTCATCTTCTGCTGCAGAAGCAGCAGCAGCCCCTTCACATCTGCTGCAGTAGGCCTTCTAGTAAGTGGGACTCAAATGCTGAGTCCATCAAGAACCAGAATTTTAATAATCTTGAAGATGAGGAAGAGGAGCTTGATGAGGAGGAATTCTTGGAACAAGGAGCTCAATTTTTTGCTGAGTATATTGAAAGTATTTGGATCTTTAAG : GTCTTCTGCTCCTACGGTTTTGTGTTAATACCAATTCTAATAGTATTGATTTCTACTGGAGGAGCTAAAGCTTTTGCTATGGCATTCGCCCTTCCCATTGGACAGTCTACGCTTTTCTTTGCAATCCAAAAGATACTGGACGTGATACAAAACAAACCAACGCGCAAGAGTACAGCTAAGAAGAGACAACGCGCTGCTCCCAACTCAAGCAAGACAAACTTTTGGAGAAGAGGAGGAAGCTCCAAGACACGAAAGAGAAAGACGGGCTATCAATCATGGGTGTCCAACAGTGACGTTTCAGCTAGTAAGGATGACCGAGAGGTATCTAGATTCGGAGGGTGGGATGAACTTGATCAAGAAATGCAATCTAGCAAAAGTTCAGATAAATCATCAGCTGAAACAGCAAAAATACCTGTGGAAAAAGGTAAGTTAAGTAGACCAGAAGCGACTAGCGATACGCCCCTTTTGTTAAGATTATTGATTTCCATGTTCCCATTCTTGGCTTCATGGACTAAAATGCTATAAATAGACAGCTTTTGTTGTCTATTTGAGTTGCTCCAGCGCAGAGGCGGAGCTTGATTTTTGAGTCTGAGTTCTCGATGTAGAACACATAGCTTATTGGATTCTCGATAAACTATATATGTATACATATTAAGTGGTTTTTTAACCACACATACAGAGTTCGAGCCTAGAATTTTGAGTCAATGAGTTCTGGATGTAGAAAACATAGCTTATTGGGTTCTCGATAAACTGTATGTTTACATAATTAAGTGGCTTTTTAACCA</gDNA_template>
            <first_frame> A  N  G  M  D  *  R  P  P  S  I  G  V  M  V  V  F  F  I  F  T  Y  P  *  T  P  A  L  H  L  F  F  S  L  L  K  N  P  F  L  *  T  L  *  I  H  S  L  L  I  F  C  C  R  S  S  S  S  P  F  T  S  A  A  V  G  L  L  V  S  G  T  Q  M  L  S  P  S  R  T  R  I  L  I  I  L  K  M  R  K  R  S  L  M  R  R  N  S  W  N  K  E  L  N  F  L  L  S  I  L  K  V  F  G  S  L  R :   S  S  A  P  T  V  L  C  *  Y  Q  F  *  *  Y  *  F  L  L  E  E  L  K  L  L  L  W  H  S  P  F  P  L  D  S  L  R  F  S  L  Q  S  K  R  Y  W  T  *  Y  K  T  N  Q  R  A  R  V  Q  L  R  R  D  N  A  L  L  P  T  Q  A  R  Q  T  F  G  E  E  E  E  A  P  R  H  E  R  E  R  R  A  I  N  H  G  C  P  T  V  T  F  Q  L  V  R  M  T  E  R  Y  L  D  S  E  G  G  M  N  L  I  K  K  C  N  L  A  K  V  Q  I  N  H  Q  L  K  Q  Q  K  Y  L  W  K  K  V  S  *  V  D  Q  K  R  L  A  I  R  P  F  C  *  D  Y  *  F  P  C  S  H  S  W  L  H  G  L  K  C  Y  K  *  T  A  F  V  V  Y  L  S  C  S  S  A  E  A  E  L  D  F  *  V  *  V  L  D  V  E  H  I  A  Y  W  I  L  D  K  L  Y  M  Y  T  Y  *  V  V  F  *  P  H  I  Q  S  S  S  L  E  F  *  V  N  E  F  W  M  *  K  T  *  L  I  G  F  S  I  N  C  M  F  T  *  L  S  G  F  L  T  </first_frame>
            <second_frame>  P  M  E  W  T  E  D  H  H  Q  *  G  *  W  W  S  S  S  S  S  L  T  L  K  P  Q  P  F  T  S  S  F  L  Y  S  K  T  H  F  F  K  P  S  K  S  T  L  F  S  S  S  A  A  E  A  A  A  A  P  S  H  L  L  Q  *  A  F  *  *  V  G  L  K  C  *  V  H  Q  E  P  E  F  *  *  S  *  R  *  G  R  G  A  *  *  G  G  I  L  G  T  R  S  S  I  F  C  *  V  Y  *  K  Y  L  D  L  *   : G  L  L  L  L  R  F  C  V  N  T  N  S  N  S  I  D  F  Y  W  R  S  *  S  F  C  Y  G  I  R  P  S  H  W  T  V  Y  A  F  L  C  N  P  K  D  T  G  R  D  T  K  Q  T  N  A  Q  E  Y  S  *  E  E  T  T  R  C  S  Q  L  K  Q  D  K  L  L  E  K  R  R  K  L  Q  D  T  K  E  K  D  G  L  S  I  M  G  V  Q  Q  *  R  F  S  *  *  G  *  P  R  G  I  *  I  R  R  V  G  *  T  *  S  R  N  A  I  *  Q  K  F  R  *  I  I  S  *  N  S  K  N  T  C  G  K  R  *  V  K  *  T  R  S  D  *  R  Y  A  P  F  V  K  I  I  D  F  H  V  P  I  L  G  F  M  D  *  N  A  I  N  R  Q  L  L  L  S  I  *  V  A  P  A  Q  R  R  S  L  I  F  E  S  E  F  S  M  *  N  T  *  L  I  G  F  S  I  N  Y  I  C  I  H  I  K  W  F  F  N  H  T  Y  R  V  R  A  *  N  F  E  S  M  S  S  G  C  R  K  H  S  L  L  G  S  R  *  T  V  C  L  H  N  *  V  A  F  *  P </second_frame>
            <third_frame>   Q  W  N  G  L  K  T  T  I  N  R  G  D  G  G  L  L  H  L  H  L  P  L  N  P  S  P  S  P  L  L  F  F  T  Q  K  P  I  S  L  N  P  L  N  P  L  S  S  H  L  L  L  Q  K  Q  Q  Q  P  L  H  I  C  C  S  R  P  S  S  K  W  D  S  N  A  E  S  I  K  N  Q  N  F  N  N  L  E  D  E  E  E  E  L  D  E  E  E  F  L  E  Q  G  A  Q  F  F  A  E  Y  I  E  S  I  W  I  F  K  :  V  F  C  S  Y  G  F  V  L  I  P  I  L  I  V  L  I  S  T  G  G  A  K  A  F  A  M  A  F  A  L  P  I  G  Q  S  T  L  F  F  A  I  Q  K  I  L  D  V  I  Q  N  K  P  T  R  K  S  T  A  K  K  R  Q  R  A  A  P  N  S  S  K  T  N  F  W  R  R  G  G  S  S  K  T  R  K  R  K  T  G  Y  Q  S  W  V  S  N  S  D  V  S  A  S  K  D  D  R  E  V  S  R  F  G  G  W  D  E  L  D  Q  E  M  Q  S  S  K  S  S  D  K  S  S  A  E  T  A  K  I  P  V  E  K  G  K  L  S  R  P  E  A  T  S  D  T  P  L  L  L  R  L  L  I  S  M  F  P  F  L  A  S  W  T  K  M  L  *  I  D  S  F  C  C  L  F  E  L  L  Q  R  R  G  G  A  *  F  L  S  L  S  S  R  C  R  T  H  S  L  L  D  S  R  *  T  I  Y  V  Y  I  L  S  G  F  L  T  T  H  T  E  F  E  P  R  I  L  S  Q  *  V  L  D  V  E  N  I  A  Y  W  V  L  D  K  L  Y  V  Y  I  I  K  W  L  F  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0177O17.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25972" stop="25625"/>
                    <exon start="24233" stop="23709"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>870</number_coding_nucleotides>
                  <number_encoded_amino_acids>290</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QWNGLKTTINRGDGGLLHLHLPLNPSPSPLLFFTQKPISLNPLNPLSSHLLLQKQQQPLHICCSRPSSKWDSNAESIKNQNFNNLEDEEEELDEEEFLEQGAQFFAEYIESIWIFKVFCSYGFVLIPILIVLISTGGAKAFAMAFALPIGQSTLFFAIQKILDVIQNKPTRKSTAKKRQRAAPNSSKTNFWRRGGSSKTRKRKTGYQSWVSNSDVSASKDDREVSRFGGWDELDQEMQSSKSSDKSSAETAKIPVEKGKLSRPEATSDTPLLLRLLISMFPFLASWTKML*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="28619" PGL_stop="26498"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28619" e_stop="28564"/>
            <exon e_start="28455" e_stop="28369"/>
            <exon e_start="27648" e_stop="27581"/>
            <exon e_start="27001" e_stop="26498"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.793" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.705" acc_prob="0.971" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="28619" e_stop="28564" e_length="56"/>
          </exon>
          <intron i_serial="1" don_prob="0.793" acc_prob="0.998">
            <gDNA_intron_boundary i_start="28563" i_stop="28456" i_length="108"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="28455" e_stop="28369" e_length="87"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="28368" i_stop="27649" i_length="720"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="27648" e_stop="27581" e_length="68"/>
          </exon>
          <intron i_serial="3" don_prob="0.705" acc_prob="0.971">
            <gDNA_intron_boundary i_start="27580" i_stop="27002" i_length="579"/>
          </intron>
          <exon e_serial="4" e_score="0.992">
            <gDNA_exon_boundary e_start="27001" e_stop="26498" e_length="504"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28619" stop="28564"/>
              <exon start="28455" stop="28369"/>
              <exon start="27648" stop="27581"/>
              <exon start="27001" stop="26498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U319700" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAACGTTGCTTGTTTCCATCCTTTGGTTGGTGGTGGCCTAGTATATGGAACTAAG : GAAGGAAAATTGAGGATCCTGCAATTTGATAAATCAAATGGTTTGGACTCTACAGTATCCTGTTCCCCTGATGAAGACATGCTCGAG : GTCCCAACATATGCTTTAGAAGGCTAGAAACTATTGATGTCAGCAGATGGTTGTAGTTGTAAAACTCG : GCTGTAACGAAAATACACATATCAGGACAATGACTGGTGGCTTCAAAGTTGAGTGTGTTGCTGATGGTTTGCTGTATAGTTGGTTGAATGTGTGCCACTGGTGGCAAAGAGAGGATTTTTACTTCCGGTTGTGTACTTACGTTAGACATTACAGACTGACTGATCTTTTTCGTGCTACAAGAGAGTGCAAAAATCGTTGTGCTTAAGGTGGCTTCAGGAGAGCTGAGAAAATACTAACATGATAGAAGAGGAAATGTCGTCGAAAAGTTGGGATTGCTGTTTCTGCAAAGTTTGACATTTCGTTGTATTGATATATGGCTTCAAATGTACATCAGAAATTGAAATAGACTAGTTGGTTTTCTTTCAAGTGAAGGTTCAAGAAGAAAAAAAAGAAAATTTCCAGCCACAAACATGCAAGTGTTTATATATTATGTATTCAACATTTTGTACTTTTTAATGGTTTCTGTTTTGTAGACTAATGGTAAAAGAAAGAAAAAGAAAAGA</gDNA_template>
            <first_frame> L  T  L  L  V  S  I  L  W  L  V  V  A  *  Y  M  E  L  R :   K  E  N  *  G  S  C  N  L  I  N  Q  M  V  W  T  L  Q  Y  P  V  P  L  M  K  T  C  S  R :   S  Q  H  M  L  *  K  A  R  N  Y  *  C  Q  Q  M  V  V  V  V  K  L   : G  C  N  E  N  T  H  I  R  T  M  T  G  G  F  K  V  E  C  V  A  D  G  L  L  Y  S  W  L  N  V  C  H  W  W  Q  R  E  D  F  Y  F  R  L  C  T  Y  V  R  H  Y  R  L  T  D  L  F  R  A  T  R  E  C  K  N  R  C  A  *  G  G  F  R  R  A  E  K  I  L  T  *  *  K  R  K  C  R  R  K  V  G  I  A  V  S  A  K  F  D  I  S  L  Y  *  Y  M  A  S  N  V  H  Q  K  L  K  *  T  S  W  F  S  F  K  *  R  F  K  K  K  K  K  K  I  S  S  H  K  H  A  S  V  Y  I  L  C  I  Q  H  F  V  L  F  N  G  F  C  F  V  D  *  W  *  K  K  E  K  E  K  </first_frame>
            <second_frame>  *  R  C  L  F  P  S  F  G  W  W  W  P  S  I  W  N  *   : G  R  K  I  E  D  P  A  I  *  *  I  K  W  F  G  L  Y  S  I  L  F  P  *  *  R  H  A  R   : G  P  N  I  C  F  R  R  L  E  T  I  D  V  S  R  W  L  *  L  *  N  S  :  A  V  T  K  I  H  I  S  G  Q  *  L  V  A  S  K  L  S  V  L  L  M  V  C  C  I  V  G  *  M  C  A  T  G  G  K  E  R  I  F  T  S  G  C  V  L  T  L  D  I  T  D  *  L  I  F  F  V  L  Q  E  S  A  K  I  V  V  L  K  V  A  S  G  E  L  R  K  Y  *  H  D  R  R  G  N  V  V  E  K  L  G  L  L  F  L  Q  S  L  T  F  R  C  I  D  I  W  L  Q  M  Y  I  R  N  *  N  R  L  V  G  F  L  S  S  E  G  S  R  R  K  K  R  K  F  P  A  T  N  M  Q  V  F  I  Y  Y  V  F  N  I  L  Y  F  L  M  V  S  V  L  *  T  N  G  K  R  K  K  K  K  R </second_frame>
            <third_frame>   N  V  A  C  F  H  P  L  V  G  G  G  L  V  Y  G  T  K  :  E  G  K  L  R  I  L  Q  F  D  K  S  N  G  L  D  S  T  V  S  C  S  P  D  E  D  M  L  E  :  V  P  T  Y  A  L  E  G  *  K  L  L  M  S  A  D  G  C  S  C  K  T  R :   L  *  R  K  Y  T  Y  Q  D  N  D  W  W  L  Q  S  *  V  C  C  *  W  F  A  V  *  L  V  E  C  V  P  L  V  A  K  R  G  F  L  L  P  V  V  Y  L  R  *  T  L  Q  T  D  *  S  F  S  C  Y  K  R  V  Q  K  S  L  C  L  R  W  L  Q  E  S  *  E  N  T  N  M  I  E  E  E  M  S  S  K  S  W  D  C  C  F  C  K  V  *  H  F  V  V  L  I  Y  G  F  K  C  T  S  E  I  E  I  D  *  L  V  F  F  Q  V  K  V  Q  E  E  K  K  E  N  F  Q  P  Q  T  C  K  C  L  Y  I  M  Y  S  T  F  C  T  F  *  W  F  L  F  C  R  L  M  V  K  E  R  K  R  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0177O17.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27611" stop="27581"/>
                    <exon start="27001" stop="26796"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CQQMVVVVKLGCNENTHIRTMTGGFKVECVADGLLYSWLNVCHWWQREDFYFRLCTYVRHYRLTDLFRATRECKNRCA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="31936" PGL_stop="28631"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="31936" e_stop="31212"/>
            <exon e_start="30917" e_stop="30723"/>
            <exon e_start="30589" e_stop="30529"/>
            <exon e_start="29912" e_stop="29799"/>
            <exon e_start="28677" e_stop="28631"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.859" acc_prob="0.723" e_score="0.999"/>
          <exon-intron don_prob="0.976" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.833" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.981" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="31936" e_stop="31212" e_length="725"/>
          </exon>
          <intron i_serial="1" don_prob="0.859" acc_prob="0.723">
            <gDNA_intron_boundary i_start="31211" i_stop="30918" i_length="294"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="30917" e_stop="30723" e_length="195"/>
          </exon>
          <intron i_serial="2" don_prob="0.976" acc_prob="0.986">
            <gDNA_intron_boundary i_start="30722" i_stop="30590" i_length="133"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="30589" e_stop="30529" e_length="61"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.833">
            <gDNA_intron_boundary i_start="30528" i_stop="29913" i_length="616"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="29912" e_stop="29799" e_length="114"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.981">
            <gDNA_intron_boundary i_start="29798" i_stop="28678" i_length="1121"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="28677" e_stop="28631" e_length="47"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31936" stop="31212"/>
              <exon start="30917" stop="30723"/>
              <exon start="30589" stop="30529"/>
              <exon start="29912" stop="29799"/>
              <exon start="28677" stop="28631"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U321541" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGAGTAATGCAGACATGGGTTCTGACAGTACACAGAACAGAGCAGACACTTCTGCCTCTGTCAGACTTCTCACTTACTCAACTCCTTCTGGCCAGTATGAACTTTTATTGTCCCCTGTTGAGCCAACTTTATCTCCTGCGCAAGAAGCTCAGACTAGTTCCTCTGTTAGGGATACAGAGAATGCATCTAACCCTGTTGGTGATCCTATGGAGACTGATGCGCCGACTGAGGAGAGAAACAATCAGTTTTTTCCTTTCAGTGACCCTGCATACTGGGACTTACCATTCTTGCAAGGATGGTTGATTGGCCAAAGCCAAGCAGGCCGACAAGCGATTCATTCTGAGCATAGTGGTGCCACAAACATTGTATCAGCTTATGGTGAAGTAGAACATCGTCCTGCAGTTCCGTCCATCATTTCAAACGGTAATCATCCAAGGTCTGGAAGATCTGGTTCCCGGCACCGTTCTTCACGCTCTAGAGTAATACCTGTTGCTGGATCTGGTGATAGTGCTGTTCCCATTAACATTGCACATAATGAAAGTGATTCTCAAGCTCTTATGAGTCGGTTCCAGTCAGAGATAGCTACTTCCCTGACTGCAGCAGCTTCTTCTGAATTACCTTGTACTGTGAAACTCAGAGTGTGGCCTTATGATATTAAGGTTCCATGTGCGCCGCTTGATGCTGAAAAATGTCGCTTAATTATACCACATGCTGTGCTCTGTAG : TGAAATGGGTGCCCACTTTTCACCATGTGGAAGATTTTTAGCAGCTTGTGTTGCTTGTATTAGTCATGGCATGGAAGCTGATCCTGGTTTCCATGGACAATTTCGTCACGATGCTGCAACTTCACCTACCAGACATCCAATTGCAGCCCACCCGGTTATGTATGAGCTACGTATATATTCCTTGGAGGAGGCAAA : TTTTGGTAGGGTGCTTGCATCTCGACTAATTAGAGCTGCTCATTGTTTGACTTCAATTCAG : TTCTCTCCAACTTCTGAGCATCTTTTACTTGCCTATGGACGTCGCCATGGATCACTTCTGAAAAGTATTGTGATCGATGGAGATACAACTCTACCTGTCTACACTATTCTTGAG : GTCTATAGAGTTTCGGATATGGAACTTGTGAGAGTTCTTCCCAGTGC</gDNA_template>
            <first_frame> Q  S  N  A  D  M  G  S  D  S  T  Q  N  R  A  D  T  S  A  S  V  R  L  L  T  Y  S  T  P  S  G  Q  Y  E  L  L  L  S  P  V  E  P  T  L  S  P  A  Q  E  A  Q  T  S  S  S  V  R  D  T  E  N  A  S  N  P  V  G  D  P  M  E  T  D  A  P  T  E  E  R  N  N  Q  F  F  P  F  S  D  P  A  Y  W  D  L  P  F  L  Q  G  W  L  I  G  Q  S  Q  A  G  R  Q  A  I  H  S  E  H  S  G  A  T  N  I  V  S  A  Y  G  E  V  E  H  R  P  A  V  P  S  I  I  S  N  G  N  H  P  R  S  G  R  S  G  S  R  H  R  S  S  R  S  R  V  I  P  V  A  G  S  G  D  S  A  V  P  I  N  I  A  H  N  E  S  D  S  Q  A  L  M  S  R  F  Q  S  E  I  A  T  S  L  T  A  A  A  S  S  E  L  P  C  T  V  K  L  R  V  W  P  Y  D  I  K  V  P  C  A  P  L  D  A  E  K  C  R  L  I  I  P  H  A  V  L  C  S :   E  M  G  A  H  F  S  P  C  G  R  F  L  A  A  C  V  A  C  I  S  H  G  M  E  A  D  P  G  F  H  G  Q  F  R  H  D  A  A  T  S  P  T  R  H  P  I  A  A  H  P  V  M  Y  E  L  R  I  Y  S  L  E  E  A  N :   F  G  R  V  L  A  S  R  L  I  R  A  A  H  C  L  T  S  I  Q  :  F  S  P  T  S  E  H  L  L  L  A  Y  G  R  R  H  G  S  L  L  K  S  I  V  I  D  G  D  T  T  L  P  V  Y  T  I  L  E  :  V  Y  R  V  S  D  M  E  L  V  R  V  L  P  S   </first_frame>
            <second_frame>  R  V  M  Q  T  W  V  L  T  V  H  R  T  E  Q  T  L  L  P  L  S  D  F  S  L  T  Q  L  L  L  A  S  M  N  F  Y  C  P  L  L  S  Q  L  Y  L  L  R  K  K  L  R  L  V  P  L  L  G  I  Q  R  M  H  L  T  L  L  V  I  L  W  R  L  M  R  R  L  R  R  E  T  I  S  F  F  L  S  V  T  L  H  T  G  T  Y  H  S  C  K  D  G  *  L  A  K  A  K  Q  A  D  K  R  F  I  L  S  I  V  V  P  Q  T  L  Y  Q  L  M  V  K  *  N  I  V  L  Q  F  R  P  S  F  Q  T  V  I  I  Q  G  L  E  D  L  V  P  G  T  V  L  H  A  L  E  *  Y  L  L  L  D  L  V  I  V  L  F  P  L  T  L  H  I  M  K  V  I  L  K  L  L  *  V  G  S  S  Q  R  *  L  L  P  *  L  Q  Q  L  L  L  N  Y  L  V  L  *  N  S  E  C  G  L  M  I  L  R  F  H  V  R  R  L  M  L  K  N  V  A  *  L  Y  H  M  L  C  S  V   : V  K  W  V  P  T  F  H  H  V  E  D  F  *  Q  L  V  L  L  V  L  V  M  A  W  K  L  I  L  V  S  M  D  N  F  V  T  M  L  Q  L  H  L  P  D  I  Q  L  Q  P  T  R  L  C  M  S  Y  V  Y  I  P  W  R  R  Q   : I  L  V  G  C  L  H  L  D  *  L  E  L  L  I  V  *  L  Q  F  S :   S  L  Q  L  L  S  I  F  Y  L  P  M  D  V  A  M  D  H  F  *  K  V  L  *  S  M  E  I  Q  L  Y  L  S  T  L  F  L  R :   S  I  E  F  R  I  W  N  L  *  E  F  F  P  V  </second_frame>
            <third_frame>   E  *  C  R  H  G  F  *  Q  Y  T  E  Q  S  R  H  F  C  L  C  Q  T  S  H  L  L  N  S  F  W  P  V  *  T  F  I  V  P  C  *  A  N  F  I  S  C  A  R  S  S  D  *  F  L  C  *  G  Y  R  E  C  I  *  P  C  W  *  S  Y  G  D  *  C  A  D  *  G  E  K  Q  S  V  F  S  F  Q  *  P  C  I  L  G  L  T  I  L  A  R  M  V  D  W  P  K  P  S  R  P  T  S  D  S  F  *  A  *  W  C  H  K  H  C  I  S  L  W  *  S  R  T  S  S  C  S  S  V  H  H  F  K  R  *  S  S  K  V  W  K  I  W  F  P  A  P  F  F  T  L  *  S  N  T  C  C  W  I  W  *  *  C  C  S  H  *  H  C  T  *  *  K  *  F  S  S  S  Y  E  S  V  P  V  R  D  S  Y  F  P  D  C  S  S  F  F  *  I  T  L  Y  C  E  T  Q  S  V  A  L  *  Y  *  G  S  M  C  A  A  *  C  *  K  M  S  L  N  Y  T  T  C  C  A  L  *  :  *  N  G  C  P  L  F  T  M  W  K  I  F  S  S  L  C  C  L  Y  *  S  W  H  G  S  *  S  W  F  P  W  T  I  S  S  R  C  C  N  F  T  Y  Q  T  S  N  C  S  P  P  G  Y  V  *  A  T  Y  I  F  L  G  G  G  K  :  F  W  *  G  A  C  I  S  T  N  *  S  C  S  L  F  D  F  N  S   : V  L  S  N  F  *  A  S  F  T  C  L  W  T  S  P  W  I  T  S  E  K  Y  C  D  R  W  R  Y  N  S  T  C  L  H  Y  S  *   : G  L  *  S  F  G  Y  G  T  C  E  S  S  S  Q  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0177O17.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31936" stop="31212"/>
                    <exon start="30917" stop="30723"/>
                    <exon start="30589" stop="30529"/>
                    <exon start="29912" stop="29799"/>
                    <exon start="28677" stop="28633"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1140</number_coding_nucleotides>
                  <number_encoded_amino_acids>380</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QSNADMGSDSTQNRADTSASVRLLTYSTPSGQYELLLSPVEPTLSPAQEAQTSSSVRDTENASNPVGDPMETDAPTEERNNQFFPFSDPAYWDLPFLQGWLIGQSQAGRQAIHSEHSGATNIVSAYGEVEHRPAVPSIISNGNHPRSGRSGSRHRSSRSRVIPVAGSGDSAVPINIAHNESDSQALMSRFQSEIATSLTAAASSELPCTVKLRVWPYDIKVPCAPLDAEKCRLIIPHAVLCSEMGAHFSPCGRFLAACVACISHGMEADPGFHGQFRHDAATSPTRHPIAAHPVMYELRIYSLEEANFGRVLASRLIRAAHCLTSIQFSPTSEHLLLAYGRRHGSLLKSIVIDGDTTLPVYTILEVYRVSDMELVRVLPS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="35133" PGL_stop="32665"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35133" e_stop="34754"/>
            <exon e_start="33945" e_stop="33784"/>
            <exon e_start="33686" e_stop="33570"/>
            <exon e_start="33268" e_stop="33184"/>
            <exon e_start="32688" e_stop="32665"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="0.959" e_score="1.000"/>
          <exon-intron don_prob="0.770" acc_prob="0.862" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.715" acc_prob="0.996" e_score="0.988"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="35133" e_stop="34754" e_length="380"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="0.959">
            <gDNA_intron_boundary i_start="34753" i_stop="33946" i_length="808"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="33945" e_stop="33784" e_length="162"/>
          </exon>
          <intron i_serial="2" don_prob="0.770" acc_prob="0.862">
            <gDNA_intron_boundary i_start="33783" i_stop="33687" i_length="97"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="33686" e_stop="33570" e_length="117"/>
          </exon>
          <intron i_serial="3" don_prob="0.971" acc_prob="0.952">
            <gDNA_intron_boundary i_start="33569" i_stop="33269" i_length="301"/>
          </intron>
          <exon e_serial="4" e_score="0.988">
            <gDNA_exon_boundary e_start="33268" e_stop="33184" e_length="85"/>
          </exon>
          <intron i_serial="4" don_prob="0.715" acc_prob="0.996">
            <gDNA_intron_boundary i_start="33183" i_stop="32689" i_length="495"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="32688" e_stop="32665" e_length="24"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35133" stop="34754"/>
              <exon start="33945" stop="33784"/>
              <exon start="33686" stop="33570"/>
              <exon start="33268" stop="33184"/>
              <exon start="32688" stop="32665"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U321883" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATACCTTCCGTCGTCTTCTTCATTTTTCTCATTTTCCCCTAAATTTTTTTTTCTTCCCATTTTGCCCTTCTACAAGATCTCTATATCCTCCATCCCTCTATATTTCCCGGTGTAAATTCCACCAAATTTGAGGGCATTTTCGGATAATTTTATCGATTTTTTAATATTTCGCCGGAAAAGTTCCATTGGAAATGACGGGAAATATTGGGGCATGAGGTATTCGTTTGTGGGGATAGAATTATGAGGGGATCTCTTTGGCCGGAGAATTCAAGTAGTGATTCATCTACGTCAAATCCGATTCATGTACCGCCGCCGCCGCCGCCGCCGGGATGGAATTCGCCTGCTCTTCCGATTGAGCAAAACCCTAATTGCAAAAACAG : ATGTGGTAATGTCTTTCAGCTACTAACGAAGAGGGAGGTATCTCCTCGAGCTAAACGTAGTTCTAAGAAGTTATGGGATGAGAATTCTAAATATTGTGCTCATTCCTATGAGAAGTTAAAAAGCCAAGTAGCAAGAGACCCGAGACGGGGTCTTATATCATG : GGTAGAGGCAGAATCATTGAGACATTTTTCAGCTAAGTATTGTCCACTGTTGCCTCCGCCTAGGTCTACAATTGCTGCGGCATTCAGTCCTGATGGGAAGACACTTGCTTCTACTCA : TGGAGATCACACAGTAAAGATAATTGACTGCCAAAGCGGGAAATGCTTGAAGGTGTTAAGTGGACATCGCAGGACTCCTTGGGTG : GTTCGTTTCCATCCACTCTACTCT</gDNA_template>
            <first_frame> I  P  S  V  V  F  F  I  F  L  I  F  P  *  I  F  F  S  S  H  F  A  L  L  Q  D  L  Y  I  L  H  P  S  I  F  P  G  V  N  S  T  K  F  E  G  I  F  G  *  F  Y  R  F  F  N  I  S  P  E  K  F  H  W  K  *  R  E  I  L  G  H  E  V  F  V  C  G  D  R  I  M  R  G  S  L  W  P  E  N  S  S  S  D  S  S  T  S  N  P  I  H  V  P  P  P  P  P  P  P  G  W  N  S  P  A  L  P  I  E  Q  N  P  N  C  K  N  R :   C  G  N  V  F  Q  L  L  T  K  R  E  V  S  P  R  A  K  R  S  S  K  K  L  W  D  E  N  S  K  Y  C  A  H  S  Y  E  K  L  K  S  Q  V  A  R  D  P  R  R  G  L  I  S  W :   V  E  A  E  S  L  R  H  F  S  A  K  Y  C  P  L  L  P  P  P  R  S  T  I  A  A  A  F  S  P  D  G  K  T  L  A  S  T  H :   G  D  H  T  V  K  I  I  D  C  Q  S  G  K  C  L  K  V  L  S  G  H  R  R  T  P  W  V  :  V  R  F  H  P  L  Y  S </first_frame>
            <second_frame>  Y  L  P  S  S  S  S  F  F  S  F  S  P  K  F  F  F  L  P  I  L  P  F  Y  K  I  S  I  S  S  I  P  L  Y  F  P  V  *  I  P  P  N  L  R  A  F  S  D  N  F  I  D  F  L  I  F  R  R  K  S  S  I  G  N  D  G  K  Y  W  G  M  R  Y  S  F  V  G  I  E  L  *  G  D  L  F  G  R  R  I  Q  V  V  I  H  L  R  Q  I  R  F  M  Y  R  R  R  R  R  R  R  D  G  I  R  L  L  F  R  L  S  K  T  L  I  A  K  T   : D  V  V  M  S  F  S  Y  *  R  R  G  R  Y  L  L  E  L  N  V  V  L  R  S  Y  G  M  R  I  L  N  I  V  L  I  P  M  R  S  *  K  A  K  *  Q  E  T  R  D  G  V  L  Y  H   : G  *  R  Q  N  H  *  D  I  F  Q  L  S  I  V  H  C  C  L  R  L  G  L  Q  L  L  R  H  S  V  L  M  G  R  H  L  L  L  L   : M  E  I  T  Q  *  R  *  L  T  A  K  A  G  N  A  *  R  C  *  V  D  I  A  G  L  L  G  W :   F  V  S  I  H  S  T   </second_frame>
            <third_frame>   T  F  R  R  L  L  H  F  S  H  F  P  L  N  F  F  F  F  P  F  C  P  S  T  R  S  L  Y  P  P  S  L  Y  I  S  R  C  K  F  H  Q  I  *  G  H  F  R  I  I  L  S  I  F  *  Y  F  A  G  K  V  P  L  E  M  T  G  N  I  G  A  *  G  I  R  L  W  G  *  N  Y  E  G  I  S  L  A  G  E  F  K  *  *  F  I  Y  V  K  S  D  S  C  T  A  A  A  A  A  A  G  M  E  F  A  C  S  S  D  *  A  K  P  *  L  Q  K  Q  :  M  W  *  C  L  S  A  T  N  E  E  G  G  I  S  S  S  *  T  *  F  *  E  V  M  G  *  E  F  *  I  L  C  S  F  L  *  E  V  K  K  P  S  S  K  R  P  E  T  G  S  Y  I  M  :  G  R  G  R  I  I  E  T  F  F  S  *  V  L  S  T  V  A  S  A  *  V  Y  N  C  C  G  I  Q  S  *  W  E  D  T  C  F  Y  S  :  W  R  S  H  S  K  D  N  *  L  P  K  R  E  M  L  E  G  V  K  W  T  S  Q  D  S  L  G   : G  S  F  P  S  T  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0177O17.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34938" stop="34754"/>
                    <exon start="33945" stop="33784"/>
                    <exon start="33686" stop="33570"/>
                    <exon start="33268" stop="33184"/>
                    <exon start="32688" stop="32665"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>573</number_coding_nucleotides>
                  <number_encoded_amino_acids>191</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>REILGHEVFVCGDRIMRGSLWPENSSSDSSTSNPIHVPPPPPPPGWNSPALPIEQNPNCKNRCGNVFQLLTKREVSPRAKRSSKKLWDENSKYCAHSYEKLKSQVARDPRRGLISWVEAESLRHFSAKYCPLLPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQSGKCLKVLSGHRRTPWVVRFHPLYS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="41574" PGL_stop="44368"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41574" e_stop="42261"/>
            <exon e_start="42875" e_stop="43085"/>
            <exon e_start="43165" e_stop="43275"/>
            <exon e_start="43375" e_stop="44368"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="0.935"/>
          <exon-intron don_prob="0.967" acc_prob="0.799" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.935">
            <gDNA_exon_boundary e_start="41574" e_stop="42261" e_length="688"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="42262" i_stop="42874" i_length="613"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42875" e_stop="43085" e_length="211"/>
          </exon>
          <intron i_serial="2" don_prob="0.967" acc_prob="0.799">
            <gDNA_intron_boundary i_start="43086" i_stop="43164" i_length="79"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="43165" e_stop="43275" e_length="111"/>
          </exon>
          <intron i_serial="3" don_prob="0.962" acc_prob="0.999">
            <gDNA_intron_boundary i_start="43276" i_stop="43374" i_length="99"/>
          </intron>
          <exon e_serial="4" e_score="0.999">
            <gDNA_exon_boundary e_start="43375" e_stop="44368" e_length="994"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41574" stop="42204"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317131" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42190" stop="42261"/>
              <exon start="42875" stop="43085"/>
              <exon start="43165" stop="43275"/>
              <exon start="43375" stop="44368"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317132" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAAAAAAAATTAAAAAAAATTCATCATTTTTAATCTGCAAAAAAAAAAATTAGTTATAATATTATTATTATTATGGCAATGAGTCTGCCACACCAGATCGGTGCCTTATCAGGAACATCGCTCACGGCGGAAACCGGTGGAGTTTCATGCGAAGTTCCGGCGAAGGGGAGTTCAGCTACATCAGCTATGTGGAGAACACCGATGACGAATTTAAAAGTATCGGTGCAAAAAACAGGAAATGAAATTGACAGGGTGTCGCCGTCGCCGTCGCCGCCGATGAGTCCGATGATGGGAGGAGGAATGCGACCGGATTTATCGGTAGCGTGTCAAGCGTTGATGGAGGCTCAGGTAGAGGAGGTAGTTGAGAGAGAATATAAGGTTAGGAATTCGTCGGAGAAAGAGAAAGGTGTTCCGGTGTTTGTTATGATGCCGTTGGATAGTGTGAAAACGGATCATACTGTGAATAGAAAAAAGGCGATGAATGCGAGTTTACAGGCGTTGAAAAGCGCCGGTGTGGAAGGGATTATGATGGATGTGTGGTGGGGATTGGTGGAGAGAGATGCACCGGGAGAGTATAATTGGGGCGGTTATGCTGAGCTTATGGAAATGGCGAAAAAACATGGACTCAAAGTTCAAGCTGTGATGTCTTTCCATCAATGCGGTGGTAACGTCGGTGATTCCTGCAC : GATCCCTCTTCCGAGGTGGGTTGTTGAGGAGATGGAGAAGGATCCAGATCTTGCATACACAGATCAGTGGGGAAGGAGGAATTTTGAATATGTATCGCTTGGTTGCGATACACTTCCAGTTCTTAAAGGAAGGACTCCTGTTCAATGCTATTCTGATTTCATGAGAGGGTTTAGAGATAGATTTGAGAATCTCTTAGGTGATACCATTGTG : GAAATTCAAGTCGGGATGGGTCCAGCTGGTGAGCTCCGTTATCCATCCTATCCCGAAAAAGATGGAATATGGAAGTTCCCTGGAATCGGTGCTTTTCAGTGTTATGATAAG : TACATGATCGGTAGCTTACAGGGTGCAGCGGAAGCATTTGGTAAGCCTGAATGGGGACACACCGGTCCAACCGATGCTGGTGAGTACAACAATTGGCCAGAAGATACAAACTTTTTCAAGAAGGAAGGTGGTGGATGGGATAGTCAATACGGGGAGTTCTTCCTCACTTGGTATTCTCAAATGCTTTTGAACCATGGCGAGAGGATACTGCAATCATCCAAGGCGATATTCGAGGACAAAGGTGTGAAGATTTCAGTTAAGATTGCAGGTATCCACTGGCACTATGGAACAAGGTCCCATGCCCCTGAGTTGACTGCTGGATACTACAACACTCGTAACCGAGATGGTTACCTTCCCATCGCCCAAATGCTTGCCCGCCACGGTGCAGTTTTCAACTTCACATGTGTTGAAATGCGTGACCACGAGCAGCCACAAGATGCACAATGTGCACCTGAGAAGTTGGTTAGGCAGGTGGCGTTAGCAACTCAGGAAGCTCAAGTTCCACTTGCTGGGGAGAATGCATTGCCACGATACGATGATTATGCTCATGAACAGATCCTTCAAGCGTCCTCGTTGAGCATCAACGATCAATCAGGTGATAGAGAGATGAGCGCGTTTACATACTTGAGGATGAATCCTGACTTATTCCATCCTGATAACTGGAGACGATTCGTTGCCTTTGTGAAGAAAATGAAAGAAGGAAAAGACGCTAACAAATGCCGCGAACAGGTAGAGAGGGAAGCAGAGCATTTCGTTCATATAACTCAGCCGTTAGTACAAGAAGCTGCAGTAGCCCTAATGCACTAAGCAAATCGTTGTCAAATAGTACTGTTTTAATTTGATCCTTTTAGCTAACATGAAGTTTTTCAACATGTTACCTGGATCTTATAGCTCGTTATCGTTGTTCTTAAATGTTTGTAAAACTGTTCATCGTGTAGTTTTTTTAAAGTCTAGACATTATGTCTTAATGAAATGATACATAATTCAGTAGTAA</gDNA_template>
            <first_frame> K  K  K  N  *  K  K  F  I  I  F  N  L  Q  K  K  K  L  V  I  I  L  L  L  L  W  Q  *  V  C  H  T  R  S  V  P  Y  Q  E  H  R  S  R  R  K  P  V  E  F  H  A  K  F  R  R  R  G  V  Q  L  H  Q  L  C  G  E  H  R  *  R  I  *  K  Y  R  C  K  K  Q  E  M  K  L  T  G  C  R  R  R  R  R  R  R  *  V  R  *  W  E  E  E  C  D  R  I  Y  R  *  R  V  K  R  *  W  R  L  R  *  R  R  *  L  R  E  N  I  R  L  G  I  R  R  R  K  R  K  V  F  R  C  L  L  *  C  R  W  I  V  *  K  R  I  I  L  *  I  E  K  R  R  *  M  R  V  Y  R  R  *  K  A  P  V  W  K  G  L  *  W  M  C  G  G  D  W  W  R  E  M  H  R  E  S  I  I  G  A  V  M  L  S  L  W  K  W  R  K  N  M  D  S  K  F  K  L  *  C  L  S  I  N  A  V  V  T  S  V  I  P  A   : R  S  L  F  R  G  G  L  L  R  R  W  R  R  I  Q  I  L  H  T  Q  I  S  G  E  G  G  I  L  N  M  Y  R  L  V  A  I  H  F  Q  F  L  K  E  G  L  L  F  N  A  I  L  I  S  *  E  G  L  E  I  D  L  R  I  S  *  V  I  P  L  W :   K  F  K  S  G  W  V  Q  L  V  S  S  V  I  H  P  I  P  K  K  M  E  Y  G  S  S  L  E  S  V  L  F  S  V  M  I  S :   T  *  S  V  A  Y  R  V  Q  R  K  H  L  V  S  L  N  G  D  T  P  V  Q  P  M  L  V  S  T  T  I  G  Q  K  I  Q  T  F  S  R  R  K  V  V  D  G  I  V  N  T  G  S  S  S  S  L  G  I  L  K  C  F  *  T  M  A  R  G  Y  C  N  H  P  R  R  Y  S  R  T  K  V  *  R  F  Q  L  R  L  Q  V  S  T  G  T  M  E  Q  G  P  M  P  L  S  *  L  L  D  T  T  T  L  V  T  E  M  V  T  F  P  S  P  K  C  L  P  A  T  V  Q  F  S  T  S  H  V  L  K  C  V  T  T  S  S  H  K  M  H  N  V  H  L  R  S  W  L  G  R  W  R  *  Q  L  R  K  L  K  F  H  L  L  G  R  M  H  C  H  D  T  M  I  M  L  M  N  R  S  F  K  R  P  R  *  A  S  T  I  N  Q  V  I  E  R  *  A  R  L  H  T  *  G  *  I  L  T  Y  S  I  L  I  T  G  D  D  S  L  P  L  *  R  K  *  K  K  E  K  T  L  T  N  A  A  N  R  *  R  G  K  Q  S  I  S  F  I  *  L  S  R  *  Y  K  K  L  Q  *  P  *  C  T  K  Q  I  V  V  K  *  Y  C  F  N  L  I  L  L  A  N  M  K  F  F  N  M  L  P  G  S  Y  S  S  L  S  L  F  L  N  V  C  K  T  V  H  R  V  V  F  L  K  S  R  H  Y  V  L  M  K  *  Y  I  I  Q  *  * </first_frame>
            <second_frame>  K  K  K  I  K  K  N  S  S  F  L  I  C  K  K  K  N  *  L  *  Y  Y  Y  Y  Y  G  N  E  S  A  T  P  D  R  C  L  I  R  N  I  A  H  G  G  N  R  W  S  F  M  R  S  S  G  E  G  E  F  S  Y  I  S  Y  V  E  N  T  D  D  E  F  K  S  I  G  A  K  N  R  K  *  N  *  Q  G  V  A  V  A  V  A  A  D  E  S  D  D  G  R  R  N  A  T  G  F  I  G  S  V  S  S  V  D  G  G  S  G  R  G  G  S  *  E  R  I  *  G  *  E  F  V  G  E  R  E  R  C  S  G  V  C  Y  D  A  V  G  *  C  E  N  G  S  Y  C  E  *  K  K  G  D  E  C  E  F  T  G  V  E  K  R  R  C  G  R  D  Y  D  G  C  V  V  G  I  G  G  E  R  C  T  G  R  V  *  L  G  R  L  C  *  A  Y  G  N  G  E  K  T  W  T  Q  S  S  S  C  D  V  F  P  S  M  R  W  *  R  R  *  F  L  H  :  D  P  S  S  E  V  G  C  *  G  D  G  E  G  S  R  S  C  I  H  R  S  V  G  K  E  E  F  *  I  C  I  A  W  L  R  Y  T  S  S  S  *  R  K  D  S  C  S  M  L  F  *  F  H  E  R  V  *  R  *  I  *  E  S  L  R  *  Y  H  C   : G  N  S  S  R  D  G  S  S  W  *  A  P  L  S  I  L  S  R  K  R  W  N  M  E  V  P  W  N  R  C  F  S  V  L  *  *   : V  H  D  R  *  L  T  G  C  S  G  S  I  W  *  A  *  M  G  T  H  R  S  N  R  C  W  *  V  Q  Q  L  A  R  R  Y  K  L  F  Q  E  G  R  W  W  M  G  *  S  I  R  G  V  L  P  H  L  V  F  S  N  A  F  E  P  W  R  E  D  T  A  I  I  Q  G  D  I  R  G  Q  R  C  E  D  F  S  *  D  C  R  Y  P  L  A  L  W  N  K  V  P  C  P  *  V  D  C  W  I  L  Q  H  S  *  P  R  W  L  P  S  H  R  P  N  A  C  P  P  R  C  S  F  Q  L  H  M  C  *  N  A  *  P  R  A  A  T  R  C  T  M  C  T  *  E  V  G  *  A  G  G  V  S  N  S  G  S  S  S  S  T  C  W  G  E  C  I  A  T  I  R  *  L  C  S  *  T  D  P  S  S  V  L  V  E  H  Q  R  S  I  R  *  *  R  D  E  R  V  Y  I  L  E  D  E  S  *  L  I  P  S  *  *  L  E  T  I  R  C  L  C  E  E  N  E  R  R  K  R  R  *  Q  M  P  R  T  G  R  E  G  S  R  A  F  R  S  Y  N  S  A  V  S  T  R  S  C  S  S  P  N  A  L  S  K  S  L  S  N  S  T  V  L  I  *  S  F  *  L  T  *  S  F  S  T  C  Y  L  D  L  I  A  R  Y  R  C  S  *  M  F  V  K  L  F  I  V  *  F  F  *  S  L  D  I  M  S  *  *  N  D  T  *  F  S  S   </second_frame>
            <third_frame>   K  K  K  L  K  K  I  H  H  F  *  S  A  K  K  K  I  S  Y  N  I  I  I  I  M  A  M  S  L  P  H  Q  I  G  A  L  S  G  T  S  L  T  A  E  T  G  G  V  S  C  E  V  P  A  K  G  S  S  A  T  S  A  M  W  R  T  P  M  T  N  L  K  V  S  V  Q  K  T  G  N  E  I  D  R  V  S  P  S  P  S  P  P  M  S  P  M  M  G  G  G  M  R  P  D  L  S  V  A  C  Q  A  L  M  E  A  Q  V  E  E  V  V  E  R  E  Y  K  V  R  N  S  S  E  K  E  K  G  V  P  V  F  V  M  M  P  L  D  S  V  K  T  D  H  T  V  N  R  K  K  A  M  N  A  S  L  Q  A  L  K  S  A  G  V  E  G  I  M  M  D  V  W  W  G  L  V  E  R  D  A  P  G  E  Y  N  W  G  G  Y  A  E  L  M  E  M  A  K  K  H  G  L  K  V  Q  A  V  M  S  F  H  Q  C  G  G  N  V  G  D  S  C  T :   I  P  L  P  R  W  V  V  E  E  M  E  K  D  P  D  L  A  Y  T  D  Q  W  G  R  R  N  F  E  Y  V  S  L  G  C  D  T  L  P  V  L  K  G  R  T  P  V  Q  C  Y  S  D  F  M  R  G  F  R  D  R  F  E  N  L  L  G  D  T  I  V  :  E  I  Q  V  G  M  G  P  A  G  E  L  R  Y  P  S  Y  P  E  K  D  G  I  W  K  F  P  G  I  G  A  F  Q  C  Y  D  K  :  Y  M  I  G  S  L  Q  G  A  A  E  A  F  G  K  P  E  W  G  H  T  G  P  T  D  A  G  E  Y  N  N  W  P  E  D  T  N  F  F  K  K  E  G  G  G  W  D  S  Q  Y  G  E  F  F  L  T  W  Y  S  Q  M  L  L  N  H  G  E  R  I  L  Q  S  S  K  A  I  F  E  D  K  G  V  K  I  S  V  K  I  A  G  I  H  W  H  Y  G  T  R  S  H  A  P  E  L  T  A  G  Y  Y  N  T  R  N  R  D  G  Y  L  P  I  A  Q  M  L  A  R  H  G  A  V  F  N  F  T  C  V  E  M  R  D  H  E  Q  P  Q  D  A  Q  C  A  P  E  K  L  V  R  Q  V  A  L  A  T  Q  E  A  Q  V  P  L  A  G  E  N  A  L  P  R  Y  D  D  Y  A  H  E  Q  I  L  Q  A  S  S  L  S  I  N  D  Q  S  G  D  R  E  M  S  A  F  T  Y  L  R  M  N  P  D  L  F  H  P  D  N  W  R  R  F  V  A  F  V  K  K  M  K  E  G  K  D  A  N  K  C  R  E  Q  V  E  R  E  A  E  H  F  V  H  I  T  Q  P  L  V  Q  E  A  A  V  A  L  M  H  *  A  N  R  C  Q  I  V  L  F  *  F  D  P  F  S  *  H  E  V  F  Q  H  V  T  W  I  L  *  L  V  I  V  V  L  K  C  L  *  N  C  S  S  C  S  F  F  K  V  *  T  L  C  L  N  E  M  I  H  N  S  V  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0177O17.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41609" stop="42261"/>
                    <exon start="42875" stop="43085"/>
                    <exon start="43165" stop="43275"/>
                    <exon start="43375" stop="44181"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1779</number_coding_nucleotides>
                  <number_encoded_amino_acids>593</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SAKKKISYNIIIIMAMSLPHQIGALSGTSLTAETGGVSCEVPAKGSSATSAMWRTPMTNLKVSVQKTGNEIDRVSPSPSPPMSPMMGGGMRPDLSVACQALMEAQVEEVVEREYKVRNSSEKEKGVPVFVMMPLDSVKTDHTVNRKKAMNASLQALKSAGVEGIMMDVWWGLVERDAPGEYNWGGYAELMEMAKKHGLKVQAVMSFHQCGGNVGDSCTIPLPRWVVEEMEKDPDLAYTDQWGRRNFEYVSLGCDTLPVLKGRTPVQCYSDFMRGFRDRFENLLGDTIVEIQVGMGPAGELRYPSYPEKDGIWKFPGIGAFQCYDKYMIGSLQGAAEAFGKPEWGHTGPTDAGEYNNWPEDTNFFKKEGGGWDSQYGEFFLTWYSQMLLNHGERILQSSKAIFEDKGVKISVKIAGIHWHYGTRSHAPELTAGYYNTRNRDGYLPIAQMLARHGAVFNFTCVEMRDHEQPQDAQCAPEKLVRQVALATQEAQVPLAGENALPRYDDYAHEQILQASSLSINDQSGDREMSAFTYLRMNPDLFHPDNWRRFVAFVKKMKEGKDANKCREQVEREAEHFVHITQPLVQEAAVALMH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="46728" PGL_stop="47164"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="46728" e_stop="47164"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="46728" e_stop="47164" e_length="437"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46728" stop="47164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U332253" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCAAGTGATCCATATGGCTCAAGGTGCAGTTGATGGAGTGAAGAACACACTTGGAATTGGATCAGACAAAAAGTGAAAAAGAGAAAATGAAATTAATTAATTAATTAATTAATTAATTAACACATTTATCAATTTATATATCTCAATTTTAATTAATTTTTCATTTAATTCTATGATTTTCACATATGCTTTAGATTATTAAGCATAAGTGAAAAAACATAATATTATTAGTTTGTGAGATCTCTCACCAAAAGAATTACAAAATTTAATTCTTATAAAGTGAGATGATTTTCATAGGTTTGGTTTAATTATTGTTTAACAATTCCATGCACCTTATATTGGTGTTATAGTGAATTTTGTTTTATTGATCGAGATTTCTCTCGTTAGAAATTCTCATTATAAGTACGTAATAAGAAAGTTTTATTTTGTTTTTGTTA</gDNA_template>
            <first_frame> A  S  D  P  Y  G  S  R  C  S  *  W  S  E  E  H  T  W  N  W  I  R  Q  K  V  K  K  R  K  *  N  *  L  I  N  *  L  I  N  *  H  I  Y  Q  F  I  Y  L  N  F  N  *  F  F  I  *  F  Y  D  F  H  I  C  F  R  L  L  S  I  S  E  K  T  *  Y  Y  *  F  V  R  S  L  T  K  R  I  T  K  F  N  S  Y  K  V  R  *  F  S  *  V  W  F  N  Y  C  L  T  I  P  C  T  L  Y  W  C  Y  S  E  F  C  F  I  D  R  D  F  S  R  *  K  F  S  L  *  V  R  N  K  K  V  L  F  C  F  C   </first_frame>
            <second_frame>  Q  V  I  H  M  A  Q  G  A  V  D  G  V  K  N  T  L  G  I  G  S  D  K  K  *  K  R  E  N  E  I  N  *  L  I  N  *  L  I  N  T  F  I  N  L  Y  I  S  I  L  I  N  F  S  F  N  S  M  I  F  T  Y  A  L  D  Y  *  A  *  V  K  K  H  N  I  I  S  L  *  D  L  S  P  K  E  L  Q  N  L  I  L  I  K  *  D  D  F  H  R  F  G  L  I  I  V  *  Q  F  H  A  P  Y  I  G  V  I  V  N  F  V  L  L  I  E  I  S  L  V  R  N  S  H  Y  K  Y  V  I  R  K  F  Y  F  V  F  V  </second_frame>
            <third_frame>   K  *  S  I  W  L  K  V  Q  L  M  E  *  R  T  H  L  E  L  D  Q  T  K  S  E  K  E  K  M  K  L  I  N  *  L  I  N  *  L  T  H  L  S  I  Y  I  S  Q  F  *  L  I  F  H  L  I  L  *  F  S  H  M  L  *  I  I  K  H  K  *  K  N  I  I  L  L  V  C  E  I  S  H  Q  K  N  Y  K  I  *  F  L  *  S  E  M  I  F  I  G  L  V  *  L  L  F  N  N  S  M  H  L  I  L  V  L  *  *  I  L  F  Y  *  S  R  F  L  S  L  E  I  L  I  I  S  T  *  *  E  S  F  I  L  F  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0177O17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="51165" PGL_stop="56680"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51165" e_stop="51184"/>
            <exon e_start="51694" e_stop="51763"/>
            <exon e_start="52408" e_stop="52489"/>
            <exon e_start="52863" e_stop="52927"/>
            <exon e_start="53148" e_stop="54170"/>
            <exon e_start="54284" e_stop="54346"/>
            <exon e_start="54426" e_stop="54472"/>
            <exon e_start="55187" e_stop="55232"/>
            <exon e_start="55341" e_stop="55420"/>
            <exon e_start="55791" e_stop="55904"/>
            <exon e_start="56654" e_stop="56680"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.770" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.765" acc_prob="0.844" e_score="1.000"/>
          <exon-intron don_prob="0.942" acc_prob="0.895" e_score="1.000"/>
          <exon-intron don_prob="0.910" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="0.896" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.608" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.972" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="51165" e_stop="51184" e_length="20"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="51185" i_stop="51693" i_length="509"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="51694" e_stop="51763" e_length="70"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.997">
            <gDNA_intron_boundary i_start="51764" i_stop="52407" i_length="644"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="52408" e_stop="52489" e_length="82"/>
          </exon>
          <intron i_serial="3" don_prob="0.770" acc_prob="0.981">
            <gDNA_intron_boundary i_start="52490" i_stop="52862" i_length="373"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="52863" e_stop="52927" e_length="65"/>
          </exon>
          <intron i_serial="4" don_prob="0.765" acc_prob="0.844">
            <gDNA_intron_boundary i_start="52928" i_stop="53147" i_length="220"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="53148" e_stop="54170" e_length="1023"/>
          </exon>
          <intron i_serial="5" don_prob="0.942" acc_prob="0.895">
            <gDNA_intron_boundary i_start="54171" i_stop="54283" i_length="113"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="54284" e_stop="54346" e_length="63"/>
          </exon>
          <intron i_serial="6" don_prob="0.910" acc_prob="0.985">
            <gDNA_intron_boundary i_start="54347" i_stop="54425" i_length="79"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="54426" e_stop="54472" e_length="47"/>
          </exon>
          <intron i_serial="7" don_prob="0.960" acc_prob="0.896">
            <gDNA_intron_boundary i_start="54473" i_stop="55186" i_length="714"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="55187" e_stop="55232" e_length="46"/>
          </exon>
          <intron i_serial="8" don_prob="0.971" acc_prob="0.608">
            <gDNA_intron_boundary i_start="55233" i_stop="55340" i_length="108"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="55341" e_stop="55420" e_length="80"/>
          </exon>
          <intron i_serial="9" don_prob="0.991" acc_prob="0.998">
            <gDNA_intron_boundary i_start="55421" i_stop="55790" i_length="370"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="55791" e_stop="55904" e_length="114"/>
          </exon>
          <intron i_serial="10" don_prob="0.991" acc_prob="0.972">
            <gDNA_intron_boundary i_start="55905" i_stop="56653" i_length="749"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="56654" e_stop="56680" e_length="27"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51165" stop="51184"/>
              <exon start="51694" stop="51763"/>
              <exon start="52408" stop="52489"/>
              <exon start="52863" stop="52927"/>
              <exon start="53148" stop="54170"/>
              <exon start="54284" stop="54346"/>
              <exon start="54426" stop="54472"/>
              <exon start="55187" stop="55232"/>
              <exon start="55341" stop="55420"/>
              <exon start="55791" stop="55904"/>
              <exon start="56654" stop="56680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U321435" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAGCAAGGTGAAATGGGG : GACAAAAGAGCCAATGTGGAATGAGGAGTTTGCTTTAAATATTAAGCAGCCACCTCTGTATGATCTTCAG : ATTGCAGCTTGGGATGCAAATCTGGTGACTCCACATAAACGCATGGGAAATGCAGCAGTTAATTTGGAACATCTCTGTGATG : GAGATTCTCATAAACTGCTGGTTGATTTGGATGGAATGGGCGGTGGTGGGAAGATAGAGATAGAG : ATTAAGTACAAGAGTTTTGAGAAAATTGAAGAAGAAAAGAAGTGGTGGAACATCCCAATCATTACAGAATTTCTAAGAAAAAACGGGTTTGAGTCTGCTTTGAAGACAATTCTTGGTTCCGAGACTGTTCAAGCTCGACAATTTGTACAGTTTGCGTTTGGACAGATGAAGCTACTTAATGATGCATATAATGATTCAAATAGCAGCAGCAGTCCTGTCCTGGAATCAGATGTACTACCGGAGTCGCAGCAATCATCCAACTTGGATGACTCAAGCATGCCCCCAGCATCAGAAATCTCAAATAATTTGAAAGACACCAAAGTTGATGGTGAAGTGAAGCTTAATCGTGATGGAAGTGACGTAACCGATGAACATGATTCCCCTGGTACTAAAATTTTAGAGAGCTTTCAATCAGATAAACATTTCTGGAAGAATTTTGCTGATACCGTCAATCAAAAAGTTGTTCAAAGACTTGGTCTCCCTGCTCCTGAGAAAATAAAGTGGGATAATCTTGACTTGTTAAATAAGATTGGATTGCAATCACGAAAAGACGCGGATGCAAGTTATGTTGAATCTGGTCTTGCAACTCCTGATAAACGAGAAAATGTTAATGGTAGTGCATCAACTGAATCACCTATTCTTAATAACATTCAGTCATCACTTCCAGATATCAAGAAGGTGACACAAGACTTATTGCGTCAAACTGATACCATTTTGGGAGCATTGATGGTTCTAAATGCCACAGTTTCTCAATTCAACAAAGGAGCAGGCCTTTTCGGAAAGGGTGATGCTAAAGAAGATTCTTCAACTGGACTGGAAAATGACATCCTTTTATATCCCATGAATAAAGATGGAATAGTGTTGGATGAGAAGAAAGCTGAGGAGATGAAGTCTCTTTTCTCAACAGCGGAGACTGCCATGGAAGCTTGGGCACTGCTAGCTACTTCATTGGGACATCCGACATTCATCAAATCTGAATTTGACAAATTATGCTTCTTAGATAATGAGTCAACTGACACAGAG : GTAGCGCTCTGGCGTGATTCAGCAAGGAAACGGTTAGTTGTTGCTTTCAGGGGAACAGAACAA : ACAAAATGGAAGGATCTTGTGACGGACTTGATGCTAGTTCCTGCAGG : GTTGAATCCTGAAAGGATAGGCGGGGACTTCAAGGAAGAAGTTCAG : GTTCACAGTGGTTTCCTAAGTGCATATGATTCAGTTAGGATTAGGCTCATCTCGCTTATCAAAAAAGCAATTGGCTACCA : GGATGATGATCTTGACACGCCAAACAAATGGCATGTTTACGTGACTGGCCATAGTCTTGGTGGTGCATTGGCTACTCTTCTCGCTCTTGAACTATCATCAAGTCAACTAGCTAA : GCGTGGAGCTATACGTGTGACCATGTA</gDNA_template>
            <first_frame> K  S  K  V  K  W  G :   T  K  E  P  M  W  N  E  E  F  A  L  N  I  K  Q  P  P  L  Y  D  L  Q  :  I  A  A  W  D  A  N  L  V  T  P  H  K  R  M  G  N  A  A  V  N  L  E  H  L  C  D   : G  D  S  H  K  L  L  V  D  L  D  G  M  G  G  G  G  K  I  E  I  E  :  I  K  Y  K  S  F  E  K  I  E  E  E  K  K  W  W  N  I  P  I  I  T  E  F  L  R  K  N  G  F  E  S  A  L  K  T  I  L  G  S  E  T  V  Q  A  R  Q  F  V  Q  F  A  F  G  Q  M  K  L  L  N  D  A  Y  N  D  S  N  S  S  S  S  P  V  L  E  S  D  V  L  P  E  S  Q  Q  S  S  N  L  D  D  S  S  M  P  P  A  S  E  I  S  N  N  L  K  D  T  K  V  D  G  E  V  K  L  N  R  D  G  S  D  V  T  D  E  H  D  S  P  G  T  K  I  L  E  S  F  Q  S  D  K  H  F  W  K  N  F  A  D  T  V  N  Q  K  V  V  Q  R  L  G  L  P  A  P  E  K  I  K  W  D  N  L  D  L  L  N  K  I  G  L  Q  S  R  K  D  A  D  A  S  Y  V  E  S  G  L  A  T  P  D  K  R  E  N  V  N  G  S  A  S  T  E  S  P  I  L  N  N  I  Q  S  S  L  P  D  I  K  K  V  T  Q  D  L  L  R  Q  T  D  T  I  L  G  A  L  M  V  L  N  A  T  V  S  Q  F  N  K  G  A  G  L  F  G  K  G  D  A  K  E  D  S  S  T  G  L  E  N  D  I  L  L  Y  P  M  N  K  D  G  I  V  L  D  E  K  K  A  E  E  M  K  S  L  F  S  T  A  E  T  A  M  E  A  W  A  L  L  A  T  S  L  G  H  P  T  F  I  K  S  E  F  D  K  L  C  F  L  D  N  E  S  T  D  T  E  :  V  A  L  W  R  D  S  A  R  K  R  L  V  V  A  F  R  G  T  E  Q  :  T  K  W  K  D  L  V  T  D  L  M  L  V  P  A  G :   L  N  P  E  R  I  G  G  D  F  K  E  E  V  Q  :  V  H  S  G  F  L  S  A  Y  D  S  V  R  I  R  L  I  S  L  I  K  K  A  I  G  Y  Q :   D  D  D  L  D  T  P  N  K  W  H  V  Y  V  T  G  H  S  L  G  G  A  L  A  T  L  L  A  L  E  L  S  S  S  Q  L  A  K :   R  G  A  I  R  V  T  M   </first_frame>
            <second_frame>  K  A  R  *  N  G   : G  Q  K  S  Q  C  G  M  R  S  L  L  *  I  L  S  S  H  L  C  M  I  F  R :   L  Q  L  G  M  Q  I  W  *  L  H  I  N  A  W  E  M  Q  Q  L  I  W  N  I  S  V  M  :  E  I  L  I  N  C  W  L  I  W  M  E  W  A  V  V  G  R  *  R  *  R :   L  S  T  R  V  L  R  K  L  K  K  K  R  S  G  G  T  S  Q  S  L  Q  N  F  *  E  K  T  G  L  S  L  L  *  R  Q  F  L  V  P  R  L  F  K  L  D  N  L  Y  S  L  R  L  D  R  *  S  Y  L  M  M  H  I  M  I  Q  I  A  A  A  V  L  S  W  N  Q  M  Y  Y  R  S  R  S  N  H  P  T  W  M  T  Q  A  C  P  Q  H  Q  K  S  Q  I  I  *  K  T  P  K  L  M  V  K  *  S  L  I  V  M  E  V  T  *  P  M  N  M  I  P  L  V  L  K  F  *  R  A  F  N  Q  I  N  I  S  G  R  I  L  L  I  P  S  I  K  K  L  F  K  D  L  V  S  L  L  L  R  K  *  S  G  I  I  L  T  C  *  I  R  L  D  C  N  H  E  K  T  R  M  Q  V  M  L  N  L  V  L  Q  L  L  I  N  E  K  M  L  M  V  V  H  Q  L  N  H  L  F  L  I  T  F  S  H  H  F  Q  I  S  R  R  *  H  K  T  Y  C  V  K  L  I  P  F  W  E  H  *  W  F  *  M  P  Q  F  L  N  S  T  K  E  Q  A  F  S  E  R  V  M  L  K  K  I  L  Q  L  D  W  K  M  T  S  F  Y  I  P  *  I  K  M  E  *  C  W  M  R  R  K  L  R  R  *  S  L  F  S  Q  Q  R  R  L  P  W  K  L  G  H  C  *  L  L  H  W  D  I  R  H  S  S  N  L  N  L  T  N  Y  A  S  *  I  M  S  Q  L  T  Q  R :   *  R  S  G  V  I  Q  Q  G  N  G  *  L  L  L  S  G  E  Q  N  K :   Q  N  G  R  I  L  *  R  T  *  C  *  F  L  Q   : G  *  I  L  K  G  *  A  G  T  S  R  K  K  F  R :   F  T  V  V  S  *  V  H  M  I  Q  L  G  L  G  S  S  R  L  S  K  K  Q  L  A  T   : R  M  M  I  L  T  R  Q  T  N  G  M  F  T  *  L  A  I  V  L  V  V  H  W  L  L  F  S  L  L  N  Y  H  Q  V  N  *  L   : S  V  E  L  Y  V  *  P  C  </second_frame>
            <third_frame>   K  Q  G  E  M  G  :  D  K  R  A  N  V  E  *  G  V  C  F  K  Y  *  A  A  T  S  V  *  S  S   : D  C  S  L  G  C  K  S  G  D  S  T  *  T  H  G  K  C  S  S  *  F  G  T  S  L  *  W :   R  F  S  *  T  A  G  *  F  G  W  N  G  R  W  W  E  D  R  D  R   : D  *  V  Q  E  F  *  E  N  *  R  R  K  E  V  V  E  H  P  N  H  Y  R  I  S  K  K  K  R  V  *  V  C  F  E  D  N  S  W  F  R  D  C  S  S  S  T  I  C  T  V  C  V  W  T  D  E  A  T  *  *  C  I  *  *  F  K  *  Q  Q  Q  S  C  P  G  I  R  C  T  T  G  V  A  A  I  I  Q  L  G  *  L  K  H  A  P  S  I  R  N  L  K  *  F  E  R  H  Q  S  *  W  *  S  E  A  *  S  *  W  K  *  R  N  R  *  T  *  F  P  W  Y  *  N  F  R  E  L  S  I  R  *  T  F  L  E  E  F  C  *  Y  R  Q  S  K  S  C  S  K  T  W  S  P  C  S  *  E  N  K  V  G  *  S  *  L  V  K  *  D  W  I  A  I  T  K  R  R  G  C  K  L  C  *  I  W  S  C  N  S  *  *  T  R  K  C  *  W  *  C  I  N  *  I  T  Y  S  *  *  H  S  V  I  T  S  R  Y  Q  E  G  D  T  R  L  I  A  S  N  *  Y  H  F  G  S  I  D  G  S  K  C  H  S  F  S  I  Q  Q  R  S  R  P  F  R  K  G  *  C  *  R  R  F  F  N  W  T  G  K  *  H  P  F  I  S  H  E  *  R  W  N  S  V  G  *  E  E  S  *  G  D  E  V  S  F  L  N  S  G  D  C  H  G  S  L  G  T  A  S  Y  F  I  G  T  S  D  I  H  Q  I  *  I  *  Q  I  M  L  L  R  *  *  V  N  *  H  R   : G  S  A  L  A  *  F  S  K  E  T  V  S  C  C  F  Q  G  N  R  T   : N  K  M  E  G  S  C  D  G  L  D  A  S  S  C  R  :  V  E  S  *  K  D  R  R  G  L  Q  G  R  S  S   : G  S  Q  W  F  P  K  C  I  *  F  S  *  D  *  A  H  L  A  Y  Q  K  S  N  W  L  P  :  G  *  *  S  *  H  A  K  Q  M  A  C  L  R  D  W  P  *  S  W  W  C  I  G  Y  S  S  R  S  *  T  I  I  K  S  T  S  *  :  A  W  S  Y  T  C  D  H  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0177O17.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51165" stop="51184"/>
                    <exon start="51694" stop="51763"/>
                    <exon start="52408" stop="52489"/>
                    <exon start="52863" stop="52927"/>
                    <exon start="53148" stop="54170"/>
                    <exon start="54284" stop="54346"/>
                    <exon start="54426" stop="54472"/>
                    <exon start="55187" stop="55232"/>
                    <exon start="55341" stop="55420"/>
                    <exon start="55791" stop="55904"/>
                    <exon start="56654" stop="56678"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1635</number_coding_nucleotides>
                  <number_encoded_amino_acids>545</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KSKVKWGTKEPMWNEEFALNIKQPPLYDLQIAAWDANLVTPHKRMGNAAVNLEHLCDGDSHKLLVDLDGMGGGGKIEIEIKYKSFEKIEEEKKWWNIPIITEFLRKNGFESALKTILGSETVQARQFVQFAFGQMKLLNDAYNDSNSSSSPVLESDVLPESQQSSNLDDSSMPPASEISNNLKDTKVDGEVKLNRDGSDVTDEHDSPGTKILESFQSDKHFWKNFADTVNQKVVQRLGLPAPEKIKWDNLDLLNKIGLQSRKDADASYVESGLATPDKRENVNGSASTESPILNNIQSSLPDIKKVTQDLLRQTDTILGALMVLNATVSQFNKGAGLFGKGDAKEDSSTGLENDILLYPMNKDGIVLDEKKAEEMKSLFSTAETAMEAWALLATSLGHPTFIKSEFDKLCFLDNESTDTEVALWRDSARKRLVVAFRGTEQTKWKDLVTDLMLVPAGLNPERIGGDFKEEVQVHSGFLSAYDSVRIRLISLIKKAIGYQDDDLDTPNKWHVYVTGHSLGGALATLLALELSSSQLAKRGAIRVTM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="57006" PGL_stop="58430"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="57006" e_stop="57448"/>
            <exon e_start="57864" e_stop="57944"/>
            <exon e_start="58396" e_stop="58430"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.933" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="57006" e_stop="57448" e_length="443"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.933">
            <gDNA_intron_boundary i_start="57449" i_stop="57863" i_length="415"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="57864" e_stop="57944" e_length="81"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.994">
            <gDNA_intron_boundary i_start="57945" i_stop="58395" i_length="451"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="58396" e_stop="58430" e_length="35"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57006" stop="57448"/>
              <exon start="57864" stop="57944"/>
              <exon start="58396" stop="58430"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U346679" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGATGTTCTCTCTCGGTCTCTCCTATGGAGGTGGCTTGTCATAAATGAAGTGTGAAACTCTTGAACATGCTATTGAATATGCATTGGTGCGTTGTCTAACATGTCAGACCAACTTTTAGCAAGTTTGAGCCATAATCAGATGCCTTATCACATTGTTTGCCGATAGTTCATGGGAATTTCTTGCCTGTTCTTCTATTGTGACGTGGTGAACGGCTGTAACTAAATCACTTTCGCCTGCTTTGGAATCATACTGAGAGCTTAATTTTGTTAAATTCTGAGTGACTCTATATAATTAAGTTGCTTCTTATATTGTAGAAAGTTAAGGACAGCTGGAGGGTTGTAAATCACAGAGATATAATACCAACAGTTCCTCGCTTGATGGGCTACTGCCATGTTGCTCAACCTGTTTATTTGGCAGCTGGAGATCCGCAAAACACAATG : GATAATGTGGAACTCTTGGAAGATGGTTACCAAGGTGATGTTATCGGAGAGGCCACACCTGATGTTATTGTCAGTGAATTT : ATGAAAGGTGAAAAAGAACTTATTGAGAAAATACT</gDNA_template>
            <first_frame> F  D  V  L  S  R  S  L  L  W  R  W  L  V  I  N  E  V  *  N  S  *  T  C  Y  *  I  C  I  G  A  L  S  N  M  S  D  Q  L  L  A  S  L  S  H  N  Q  M  P  Y  H  I  V  C  R  *  F  M  G  I  S  C  L  F  F  Y  C  D  V  V  N  G  C  N  *  I  T  F  A  C  F  G  I  I  L  R  A  *  F  C  *  I  L  S  D  S  I  *  L  S  C  F  L  Y  C  R  K  L  R  T  A  G  G  L  *  I  T  E  I  *  Y  Q  Q  F  L  A  *  W  A  T  A  M  L  L  N  L  F  I  W  Q  L  E  I  R  K  T  Q  W :   I  M  W  N  S  W  K  M  V  T  K  V  M  L  S  E  R  P  H  L  M  L  L  S  V  N  L :   *  K  V  K  K  N  L  L  R  K  Y  </first_frame>
            <second_frame>  L  M  F  S  L  G  L  S  Y  G  G  G  L  S  *  M  K  C  E  T  L  E  H  A  I  E  Y  A  L  V  R  C  L  T  C  Q  T  N  F  *  Q  V  *  A  I  I  R  C  L  I  T  L  F  A  D  S  S  W  E  F  L  A  C  S  S  I  V  T  W  *  T  A  V  T  K  S  L  S  P  A  L  E  S  Y  *  E  L  N  F  V  K  F  *  V  T  L  Y  N  *  V  A  S  Y  I  V  E  S  *  G  Q  L  E  G  C  K  S  Q  R  Y  N  T  N  S  S  S  L  D  G  L  L  P  C  C  S  T  C  L  F  G  S  W  R  S  A  K  H  N   : G  *  C  G  T  L  G  R  W  L  P  R  *  C  Y  R  R  G  H  T  *  C  Y  C  Q  *  I   : Y  E  R  *  K  R  T  Y  *  E  N  T </second_frame>
            <third_frame>   *  C  S  L  S  V  S  P  M  E  V  A  C  H  K  *  S  V  K  L  L  N  M  L  L  N  M  H  W  C  V  V  *  H  V  R  P  T  F  S  K  F  E  P  *  S  D  A  L  S  H  C  L  P  I  V  H  G  N  F  L  P  V  L  L  L  *  R  G  E  R  L  *  L  N  H  F  R  L  L  W  N  H  T  E  S  L  I  L  L  N  S  E  *  L  Y  I  I  K  L  L  L  I  L  *  K  V  K  D  S  W  R  V  V  N  H  R  D  I  I  P  T  V  P  R  L  M  G  Y  C  H  V  A  Q  P  V  Y  L  A  A  G  D  P  Q  N  T  M  :  D  N  V  E  L  L  E  D  G  Y  Q  G  D  V  I  G  E  A  T  P  D  V  I  V  S  E  F  :  M  K  G  E  K  E  L  I  E  K  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0177O17.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57323" stop="57448"/>
                    <exon start="57864" stop="57944"/>
                    <exon start="58396" stop="58428"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KVKDSWRVVNHRDIIPTVPRLMGYCHVAQPVYLAAGDPQNTMDNVELLEDGYQGDVIGEATPDVIVSEFMKGEKELIEKI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="63181" PGL_stop="66269"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="63181" e_stop="63267"/>
            <exon e_start="64890" e_stop="66269"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.942" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="63181" e_stop="63267" e_length="87"/>
          </exon>
          <intron i_serial="1" don_prob="0.942" acc_prob="0.000">
            <gDNA_intron_boundary i_start="63268" i_stop="64889" i_length="1622"/>
          </intron>
          <exon e_serial="2" e_score="0.999">
            <gDNA_exon_boundary e_start="64890" e_stop="66269" e_length="1380"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63181" stop="63267"/>
              <exon start="64890" stop="66269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320649" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTAGTTATCTGCCTCGGAACCTCCGAATTTTATAATCTTATAGGTAGAAGTGAAGAAAAAATCAGTAAAAATTCTGAGAATTTGAG : TCGGTGAAATGGCAGCAGCATCAGCAACTACTCTCTCAGTTGGTTCCGCCACATCCTTTGGCTCCATAGTGAGCCCAAAATTACAATCAAAGGCCTTTATTGCGAAATGCAATACCAGGGACTACCTTAGGAGTTTCAGTGGCCTTAAGGCAGAGGCATTTGTACGATGTGAATCCGAGTCGTCATTTCTAGGAAATGAAAGCATTGCAGCTCTTCGACAATCCATTACTCCTAAAGCCCGAAACCAAAAGCAGAGATCTTCGAACCATGTTCAGCCTCAAGCATCTTATAAAGTGGCTGTTCTCGGAGCCTCTGGCGGTATAGGCCAGCCTCTAGCTCTTCTGATTAAGATGTCACCGCTAGTATCATCGTTGCACCTTTATGATATTGCAAATGTCAAAGGAGTCGCAGCAGATCTCAGCCATTGCAACACTCCCGCTCAGGTTTTTGACTTTACGGGAGCTTCTGAGTTGGCCAATTCTTTGAAAGGTATAGATGTAGTTGTCATACCAGCTGGCGTTCCGAGAAAGCCTGGTATGACACGGGACGACTTGTTCAACATAAATGCTAATATTGTGAAAAGCTTGGTTGAGGCTGTTGCTGACAATTGCCCAGATGCCTTTATCCACATTATCAGCAATCCAGTCAACTCCACAGTGCCGATTGCTGCCGAGGTTCTGAAGCAAAAGGGTGTGTATGATCCTAAAAAACTCTTTGGTGTTACCACCCTGGACGTTGTCAGAGCAAACACATTCGTCGCGCAGAAGAAAAACCTGAAACTCATTGACGTTGACGTCCCCGTGATTGGTGGGCATGCAGGGATAACAATTCTGCCATTGCTGTCAAAGACAAGACCATCAACTACTTTCACGGACGAAGAAGTGCAGGAACTAACCGTGAGGATCCAAAACGCTGGGACCGAGGTCGTTGAAGCAAAGGCTGGAGCAGGATCTGCAACACTGTCAATGGCATATGCTGCAGCTAGATTTGTTGAATCCTCACTTCGTGCCCTTGACGGTGATGCTGATGTTTACGAGTGTTCTTACGTTCAATCTGACCTGACGGAACTTCCATTCTTTGCATCACGAGTTAAACTAGGAAGGAATGGAATCGAGGCATTGATTTCGTCTGATCTCCGTGGATTAACTGAGTATGAACAGAAGGCATTAGAAGCTCTAAAGATAGAGTTGAAAGCTAGCATTGAGAAAGGGATAGCTTATGCTCAAAAACAAACAGTGAGTGCTTAGAGAAAGAGTTTAGTTTAGATTAACTATAGGAAAAGATTCTCAACATGACAATTTTTGCATGGTTTGAACTTACTAAGCCCTTTATTCTTTTTATTGGTCTGAACTCTACTAGTGTTTTGTTATTGCTTCCTTT</gDNA_template>
            <first_frame> L  S  Y  L  P  R  N  L  R  I  L  *  S  Y  R  *  K  *  R  K  N  Q  *  K  F  *  E  F  E  :  S  V  K  W  Q  Q  H  Q  Q  L  L  S  Q  L  V  P  P  H  P  L  A  P  *  *  A  Q  N  Y  N  Q  R  P  L  L  R  N  A  I  P  G  T  T  L  G  V  S  V  A  L  R  Q  R  H  L  Y  D  V  N  P  S  R  H  F  *  E  M  K  A  L  Q  L  F  D  N  P  L  L  L  K  P  E  T  K  S  R  D  L  R  T  M  F  S  L  K  H  L  I  K  W  L  F  S  E  P  L  A  V  *  A  S  L  *  L  F  *  L  R  C  H  R  *  Y  H  R  C  T  F  M  I  L  Q  M  S  K  E  S  Q  Q  I  S  A  I  A  T  L  P  L  R  F  L  T  L  R  E  L  L  S  W  P  I  L  *  K  V  *  M  *  L  S  Y  Q  L  A  F  R  E  S  L  V  *  H  G  T  T  C  S  T  *  M  L  I  L  *  K  A  W  L  R  L  L  L  T  I  A  Q  M  P  L  S  T  L  S  A  I  Q  S  T  P  Q  C  R  L  L  P  R  F  *  S  K  R  V  C  M  I  L  K  N  S  L  V  L  P  P  W  T  L  S  E  Q  T  H  S  S  R  R  R  K  T  *  N  S  L  T  L  T  S  P  *  L  V  G  M  Q  G  *  Q  F  C  H  C  C  Q  R  Q  D  H  Q  L  L  S  R  T  K  K  C  R  N  *  P  *  G  S  K  T  L  G  P  R  S  L  K  Q  R  L  E  Q  D  L  Q  H  C  Q  W  H  M  L  Q  L  D  L  L  N  P  H  F  V  P  L  T  V  M  L  M  F  T  S  V  L  T  F  N  L  T  *  R  N  F  H  S  L  H  H  E  L  N  *  E  G  M  E  S  R  H  *  F  R  L  I  S  V  D  *  L  S  M  N  R  R  H  *  K  L  *  R  *  S  *  K  L  A  L  R  K  G  *  L  M  L  K  N  K  Q  *  V  L  R  E  R  V  *  F  R  L  T  I  G  K  D  S  Q  H  D  N  F  C  M  V  *  T  Y  *  A  L  Y  S  F  Y  W  S  E  L  Y  *  C  F  V  I  A  S  F </first_frame>
            <second_frame>  L  V  I  C  L  G  T  S  E  F  Y  N  L  I  G  R  S  E  E  K  I  S  K  N  S  E  N  L  S :   R  *  N  G  S  S  I  S  N  Y  S  L  S  W  F  R  H  I  L  W  L  H  S  E  P  K  I  T  I  K  G  L  Y  C  E  M  Q  Y  Q  G  L  P  *  E  F  Q  W  P  *  G  R  G  I  C  T  M  *  I  R  V  V  I  S  R  K  *  K  H  C  S  S  S  T  I  H  Y  S  *  S  P  K  P  K  A  E  I  F  E  P  C  S  A  S  S  I  L  *  S  G  C  S  R  S  L  W  R  Y  R  P  A  S  S  S  S  D  *  D  V  T  A  S  I  I  V  A  P  L  *  Y  C  K  C  Q  R  S  R  S  R  S  Q  P  L  Q  H  S  R  S  G  F  *  L  Y  G  S  F  *  V  G  Q  F  F  E  R  Y  R  C  S  C  H  T  S  W  R  S  E  K  A  W  Y  D  T  G  R  L  V  Q  H  K  C  *  Y  C  E  K  L  G  *  G  C  C  *  Q  L  P  R  C  L  Y  P  H  Y  Q  Q  S  S  Q  L  H  S  A  D  C  C  R  G  S  E  A  K  G  C  V  *  S  *  K  T  L  W  C  Y  H  P  G  R  C  Q  S  K  H  I  R  R  A  E  E  K  P  E  T  H  *  R  *  R  P  R  D  W  W  A  C  R  D  N  N  S  A  I  A  V  K  D  K  T  I  N  Y  F  H  G  R  R  S  A  G  T  N  R  E  D  P  K  R  W  D  R  G  R  *  S  K  G  W  S  R  I  C  N  T  V  N  G  I  C  C  S  *  I  C  *  I  L  T  S  C  P  *  R  *  C  *  C  L  R  V  F  L  R  S  I  *  P  D  G  T  S  I  L  C  I  T  S  *  T  R  K  E  W  N  R  G  I  D  F  V  *  S  P  W  I  N  *  V  *  T  E  G  I  R  S  S  K  D  R  V  E  S  *  H  *  E  R  D  S  L  C  S  K  T  N  S  E  C  L  E  K  E  F  S  L  D  *  L  *  E  K  I  L  N  M  T  I  F  A  W  F  E  L  T  K  P  F  I  L  F  I  G  L  N  S  T  S  V  L  L  L  L  P   </second_frame>
            <third_frame>   *  L  S  A  S  E  P  P  N  F  I  I  L  *  V  E  V  K  K  K  S  V  K  I  L  R  I  *   : V  G  E  M  A  A  A  S  A  T  T  L  S  V  G  S  A  T  S  F  G  S  I  V  S  P  K  L  Q  S  K  A  F  I  A  K  C  N  T  R  D  Y  L  R  S  F  S  G  L  K  A  E  A  F  V  R  C  E  S  E  S  S  F  L  G  N  E  S  I  A  A  L  R  Q  S  I  T  P  K  A  R  N  Q  K  Q  R  S  S  N  H  V  Q  P  Q  A  S  Y  K  V  A  V  L  G  A  S  G  G  I  G  Q  P  L  A  L  L  I  K  M  S  P  L  V  S  S  L  H  L  Y  D  I  A  N  V  K  G  V  A  A  D  L  S  H  C  N  T  P  A  Q  V  F  D  F  T  G  A  S  E  L  A  N  S  L  K  G  I  D  V  V  V  I  P  A  G  V  P  R  K  P  G  M  T  R  D  D  L  F  N  I  N  A  N  I  V  K  S  L  V  E  A  V  A  D  N  C  P  D  A  F  I  H  I  I  S  N  P  V  N  S  T  V  P  I  A  A  E  V  L  K  Q  K  G  V  Y  D  P  K  K  L  F  G  V  T  T  L  D  V  V  R  A  N  T  F  V  A  Q  K  K  N  L  K  L  I  D  V  D  V  P  V  I  G  G  H  A  G  I  T  I  L  P  L  L  S  K  T  R  P  S  T  T  F  T  D  E  E  V  Q  E  L  T  V  R  I  Q  N  A  G  T  E  V  V  E  A  K  A  G  A  G  S  A  T  L  S  M  A  Y  A  A  A  R  F  V  E  S  S  L  R  A  L  D  G  D  A  D  V  Y  E  C  S  Y  V  Q  S  D  L  T  E  L  P  F  F  A  S  R  V  K  L  G  R  N  G  I  E  A  L  I  S  S  D  L  R  G  L  T  E  Y  E  Q  K  A  L  E  A  L  K  I  E  L  K  A  S  I  E  K  G  I  A  Y  A  Q  K  Q  T  V  S  A  *  R  K  S  L  V  *  I  N  Y  R  K  R  F  S  T  *  Q  F  L  H  G  L  N  L  L  S  P  L  F  F  L  L  V  *  T  L  L  V  F  C  Y  C  F  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0177O17.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63267" stop="66136"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1245</number_coding_nucleotides>
                  <number_encoded_amino_acids>415</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VGEMAAASATTLSVGSATSFGSIVSPKLQSKAFIAKCNTRDYLRSFSGLKAEAFVRCESESSFLGNESIAALRQSITPKARNQKQRSSNHVQPQASYKVAVLGASGGIGQPLALLIKMSPLVSSLHLYDIANVKGVAADLSHCNTPAQVFDFTGASELANSLKGIDVVVIPAGVPRKPGMTRDDLFNINANIVKSLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVIGGHAGITILPLLSKTRPSTTFTDEEVQELTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDADVYECSYVQSDLTELPFFASRVKLGRNGIEALISSDLRGLTEYEQKALEALKIELKASIEKGIAYAQKQTVSA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="92347" PGL_stop="91907"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="92347" e_stop="91907"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.907"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.907">
            <gDNA_exon_boundary e_start="92347" e_stop="91907" e_length="441"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92347" stop="91907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344226" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTATTGTAGATGACCAAATTTTTTTCCGAATACGAAATTAAATTACAATACACACAAAACAATAGTTTAATTTTTTTTCTTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGGATAAGAAACTCAAATAATTATAATAAAAGAAGTCAAAAAATAATTTATGTATGAAAAAAATTAAAAAATATACCTTGAACTTTTATAGAAGAATCATATGTACCACTAAATAATTTTTTTTTAAAAATTATAAGTAATAAATATAAATTTAAAACTAATTATTTAACTTTCGTCAAATGAAGGGTATATGTGAGCCATTTTGTAACGGTAGGTGTATATGTGAGCCATTTGTATAACGGTAAGGGCATATATGAGCCACTTTCATAACGAGGGATGTATCAGCTCCAAATGACAAAGTTGAGGGGTATATCAGACCCTTTTCCCT</gDNA_template>
            <first_frame> L  L  *  M  T  K  F  F  S  E  Y  E  I  K  L  Q  Y  T  Q  N  N  S  L  I  F  F  L  *  T  K  E  *  K  K  K  T  K  *  G  *  E  T  Q  I  I  I  I  K  E  V  K  K  *  F  M  Y  E  K  N  *  K  I  Y  L  E  L  L  *  K  N  H  M  Y  H  *  I  I  F  F  *  K  L  *  V  I  N  I  N  L  K  L  I  I  *  L  S  S  N  E  G  Y  M  *  A  I  L  *  R  *  V  Y  M  *  A  I  C  I  T  V  R  A  Y  M  S  H  F  H  N  E  G  C  I  S  S  K  *  Q  S  *  G  V  Y  Q  T  L  F  P </first_frame>
            <second_frame>  Y  C  R  *  P  N  F  F  P  N  T  K  L  N  Y  N  T  H  K  T  I  V  *  F  F  F  F  K  L  R  N  E  R  K  K  Q  N  K  D  K  K  L  K  *  L  *  *  K  K  S  K  N  N  L  C  M  K  K  I  K  K  Y  T  L  N  F  Y  R  R  I  I  C  T  T  K  *  F  F  F  K  N  Y  K  *  *  I  *  I  *  N  *  L  F  N  F  R  Q  M  K  G  I  C  E  P  F  C  N  G  R  C  I  C  E  P  F  V  *  R  *  G  H  I  *  A  T  F  I  T  R  D  V  S  A  P  N  D  K  V  E  G  Y  I  R  P  F  S   </second_frame>
            <third_frame>   I  V  D  D  Q  I  F  F  R  I  R  N  *  I  T  I  H  T  K  Q  *  F  N  F  F  S  L  N  *  G  M  K  E  K  N  K  I  R  I  R  N  S  N  N  Y  N  K  R  S  Q  K  I  I  Y  V  *  K  K  L  K  N  I  P  *  T  F  I  E  E  S  Y  V  P  L  N  N  F  F  L  K  I  I  S  N  K  Y  K  F  K  T  N  Y  L  T  F  V  K  *  R  V  Y  V  S  H  F  V  T  V  G  V  Y  V  S  H  L  Y  N  G  K  G  I  Y  E  P  L  S  *  R  G  M  Y  Q  L  Q  M  T  K  L  R  G  I  S  D  P  F  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0177O17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 37 chains have been computed
$ 
$ memory statistics:
$ 42488 bytes spliced alignments in total
$ 21 spliced alignments have been stored
$ 2023 bytes was the average size of a spliced alignment
$ 25848 bytes predicted gene locations in total
$ 17 predicted gene locations have been stored
$ 1520 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 44 backtrace matrices have been allocated
$ 
$ date finished: 2009-02-23 17:40:52
-->
