<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 13:11:28"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09HBa0191P09-jEJBQ/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C09HBa0191P09-jEJBQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0191P09-jEJBQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U312968" ref_strand="+" ref_description="SGN-U312968        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | nascent polypeptide-associated complex (NAC) domain-containing protein, similar to SP:P20290 Transcription factor BTF3 (RNA polymerase B transcription factor 3) {Homo sapiens}; contains Pfam profile PF01849: NAC domain | chr1:27543969-27545603 REVERSE | Aliases: T18K17.10, T18K17_10(evalue: 1e-47, score=186) genbank/nr: putative(evalue: 1e-50, score=202)">
      <seq>gaatgtagaaaagttgcaaaagatggccggttcggttagaaccggtggaaagggtaccatgagaagaaagaagaaagccgtacacaaaacaactacaactgatgacaaaagactacagagcaccttgaaaagaataggtgtcaatgccattcctgccattgaagaagtcaacattttcaaagaggatgttgttatccaattcagtaaccccaaagttcaagcatcaattgctgcaaacacatgggtagtcagtggtaccccccagacaaagaaattgcaggatattcttcctcaaattattcaccagctgggtcctgatgatttggagaacttgaagaagttggctgagcagttccagaagcaggcacctggtgctgcagatgtggctgcaggtgctgttgcagcacaggaagatgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgcggctgaggagggccatacttcctgaagtcactcaatgcgtggcttttgaattcaccaaatttttacaagctgtgtgggagaaaaagactcaaccttgatggattcaaaatggccattatttcaccaatgctggaacgaagtcaagtatttagaggtttcaatccctttttggttatataaataggtcaagtgggaaacaacaataagatattattcaggtgcttttgaccagactaataaggtcgttgtggcaaagtactactgtatcagatgtaatggattagcatctcaaaacacttctatggaaaggagaccaataatagatggacattcattattttattaagggaaaagggtcagatataccctcaattttatcagttagaactgatatatcccttattatgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-jEJBQ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="224" stop="5141"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="524" g_stop="589" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="590" i_stop="1130" i_length="541">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1131" g_stop="1279" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="215" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="272" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="311" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1790" g_stop="1967" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="489" r_length="178" r_score="0.994"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="1968" i_stop="4458" i_length="2491">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.744" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="4459" g_stop="4841" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="872" r_length="383" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-U312968" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>872</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U312968" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="524" e_stop="589"/>
          <exon e_start="1131" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="1967"/>
          <exon e_start="4459" e_stop="4841"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAGGTATTTTTAGTTTTCTGTAGTTTCTGTGACTGTTGCGACATGGAAATAGTTTGTGTTAATGTATTGAGAAACAATGTGGGTTTGTTGCTAACTTGAAAGATTCCAGTTACTTGAGAGCCTGTTTTGCCATGATAACTATTCCTTTTTTTCCTTAAGAGTTGCTCATTATTACAAAATGAGTGTTTGTTTATAAAATTTCCAATTCTAACTTGGAGTGTGATTCCAAGTTTGAGAAAGTGCTCCAAACCTATCTTCCAACTCCATCTTCATAAATTCCAAATAAAGTGGTTGATTCTCTCTTTTGCAAAAAGTATATAATCAAACTCCATCTTCATCTCCAAATTCATAAATTACAAATAAAATGAAAAATATTTGGAATCTAATGGCCAAACACATACTTAAGTAGTAATGACTGACAAGTGTTTGTCCAAGGGTCAAAACTTGAGTGAGGAAGGGATAGGAAGGAGAAATGAGAAGTGTATTGATAAGGGATATCTTATTTTTCTCATTCATGTTTGCTGAATGAGTGCTTCTTCTACAGAAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAACTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCATTCTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTTTGCCCTTCAAAGCATAATCTTCTATTTCAGCATTGCTGCCTTCTTCTGTCATAATATTTGTTATTCTATACTAGCTAGTCTTTATAGTAAGAATATTTCATAGTATCTGTTATTCTATTCAAGCTAGTCTTTTTAGTAAGAAACGTGATTACATAGATCTCTTTTTTGACACACACTGTGAAGAACTTTCTGCTCTCTGCTGATGTCCTTATGTTTTGTGTATGATGGGGGCTTAGCAGGTTGTGTAATTGAGGTTGAGCAGTCATTTTGGTTGCCATGAGGTAACAATTCTGTATTAATTATAGGGGCCAAGGCTAATGCTATTAGAGCTTAGCAACTACAGGCCAAGCAGTAACAGTTCTGAGATTGCTTTGTAGGGTGCTCTCAACCAGTGGACTAGTTCTTTTGGAATTCCACCCAGTGTTTGGTATTTGCTTTGGTCTTGATTGATTTCTATTTGCTCCAAGAAAAACTCTAAAGACTTTTGATAAATAATGATTGGGTTACCACTTCCCTATCAGTCTCGAGTGGTACACAAACTATTTTTAAGTAGCTCGTTATCTTGTTGAAGTTATCTCCTCTCTTATTACTTTCACACTTTGCTGAGGAAATTCTGGGATTTTAAGTGCAGTTTTTAAACCAAAAGGAAGACTCCAATGTTTATTTTTCAAAGAATTCTGTTGATCACAAGAAAGGTAAGTGTTTTTCCAGCTAATAGAGCAAGGTTTGGAAAGTAATTAAAAAGTACTTTACAATCCATTTGTTCAACGTTTAATACACAACAAACACTTAAAGCAAGGATTTATTCTATCACATAGTTTGGGCTCCTAGAATATGGCGCCCTTGGAGCTTTCTATTTGATTGTATCGAAAGGTGGCTTATTAGTATCATTTAGCAGATGAAAAAAAAGTATTTTGTACTAGTTACAACTCCACAGTAGAAAATAAGTTGTTGCAATGACCTACTTGCATCCAATAGGCTCATGTGGTACTTAGAGATCACATAACATTCAAAATTCTGAATACTGTTAGAACTCATGTAGCCACATTTTTAGTTAGTATCAATTAGCATAACTGAAACTGGTCTATTATTATACAGGGTTACAGTTCTGTACATTATATTTTGTTGCAAAGTCCACTGCTGCCATCTTCTGGCTTTCCAGCTAAAACTAGAAATTCATCCTTGTGATCGATTCTCACATGCTTCCACTGTTTGCTTCACTCTCAACTATCAGTACTACTGTGACTAGCAACGTTGTCATCATAGTGATCGCCAGATGGTCAATCTTGTTCAGGGCATAACGACTCCTTACCCCGATTAATAGATAATTCTTGGAGGGGTGGACTACTGATTTTATGGATAGTCAAAGTAGATTACTCAACCTCTGAGTTACTATATCATTTGTTGCTTCTACTGTTTCCTTCTTACACTTGCAAAATATGCAAAATCAGCCTTCATCATACGGTGGTACTGCTAATTATCAGCTCTCTAGGTATAAGTTTTCATAAGTAGAATGATCCTGCAGACATAGCTAAACAGAAGTTGTAAAGTTGTGCTCTGATACATAAGGATTGGAATAGAGGATTGACAAACTTGTTATCTCTAGACATTCTTCATGGAAAGCGCCGCGCAGTTGCATGTACTATCATGGTCAGGAAAAGCTTCTTGCAATATGCATTTGGCACAGATAAATCTGAAAACGGAAGAACTTTTAACTCTGCATCCAAGTTTTTGATTATCCATCTATTTATGCAGATTTCTTTTCCTATTCAGCTTAAATGCTGCTATGAGTTCTAAGGGGTAGGCAAATAAAGTGCAATTAACAGAGAAGCAGCAGAGAATATAAGCAATGATTTGTTAAGACATCTGATGTGGCATATGAGATTAACTTACTCCCAAAAAGCTAGTTCATCACGGGAAAATGATCAAGTCCATACAAGCTAACTACTCCGTTGTCCAATCAATGTGAAACTTTGACTCGCTCTAGTAAGTAGTAACTCCCTTCGCACCCAGGCCTAATTGGGGCATGGACCGCGGATTGAATGTCCAAATTGAGAGGAACCTTTAATACTATTTTAAGATAATGACACGTGAATTTAACTTAATCTCAAAATCTAATTCATAATTGGAGAATTGTTTGAGTTTATATGAATCAACTACTGGTCCATCACCACTCTACTCTTAACATAATCAAATTTGACAAAAGTGTTAGTTGCACACATGAAGGACCTCTTTAGAATGGTGGAAGTAGTGATGGAGCCACCAATGTCATTTTACACCCCTTTCGCTGGAACATTATATTGGTTCATCAACTACTCAACTTGCTGCAAATGTCAACCTTAACCCTTGAATCATTGATTTTGCAGTCACTCAATGCGTGGCTTTTGAATTCACCAAATTTTTACAAGCTGTGTGGGAGAAAAAGACTCAACCTTGATGGATTCAAAATGGCCATTATTTCACCAATGCTGGAACGAAGTCAAGTATTTAGAGGTTTCAATCCCTTTTTGGTTATATAAATAGGTCAAGTGGGAAACAACAATAAGATATTATTCAGGTGCTTTTGACCAGACTAATAAGGTCGTTGTGGCAAAGTACTACTGTATCAGATGTAATGGATTAGCATCTCAAAACACTTCTATGGAAAGGAGACAAATAATAGATGCACATTCATTATATTATTAAGGGAAAAGGGTCAGATATACCCTCAATTTTATCAGTTAGAGCTGATATATCCCTTATTATGAAA</genome_strand>
        <mrna_strand>GAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGG..........................................................................................GTCCTGATGATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACTCAATGCGTGGCTTTTGAATTCACCAAATTTTTACAAGCTGTGTGGGAGAAAAAGACTCAACCTTGATGGATTCAAAATGGCCATTATTTCACCAATGCTGGAACGAAGTCAAGTATTTAGAGGTTTCAATCCCTTTTTGGTTATATAAATAGGTCAAGTGGGAAACAACAATAAGATATTATTCAGGTGCTTTTGACCAGACTAATAAGGTCGTTGTGGCAAAGTACTACTGTATCAGATGTAATGGATTAGCATCTCAAAACACTTCTATGGAAAGGAGACCAATAATAGATGGACATTCATTATTTTATTAAGGGAAAAGGGTCAGATATACCCTCAATTTTATCAGTTAGAACTGATATATCCCTTATTATGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0191P09-jEJBQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U330565" ref_strand="+" ref_description="SGN-U330565        Tomato 200607 #1 [2 ESTs aligned]">
      <seq>ggaaaaaaaagttattttgtacttagttacaactccccagtagaaaataagttgttgcaatgaccctactggcatccaataggctcatgtggtacttagagatcacataacattcaaaattctgaatactgttagaactcatgtagccacatttttagttagtatcaattagcataactgaaactggtctattattatacagggttacagttctgtacattatattttgttgcaaagtccactgctgccatcttctggctttccagctaaaactagaaattcatccttgtgatcgattctcacatgcttccactgtttgcttcactctcaactatcagtactactgtgactagcaacgttgtcatcatagtgatcgccagatggtcaatcttgttcagggcataacgactccttaccccgattaatagataattcttggaggggtggactactgattttatggatagtcaaagtagattactcaacctctgagttactatatcatttgttgcttctactgtttccttcttacacttgcaaaatatgcaaaatcagccttcatcatacggtggtactgctaattatcagctctctaggtataagttttcataagtagaatgatcctgcagacatagctaaacagaagttgtaaagttgtgctctgatacataaggattggaatagaggattgacaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-jEJBQ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="2693" stop="3984"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2992" g_stop="3684" g_length="693"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="696" r_length="696" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="697" polyA_stop="713"/>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-U330565" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U330565" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2992" e_stop="3684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAAAAAAGT-ATTTTGTAC-TAGTTACAACTCCACAGTAGAAAATAAGTTGTTGCAATGA-CCTACTTGCATCCAATAGGCTCATGTGGTACTTAGAGATCACATAACATTCAAAATTCTGAATACTGTTAGAACTCATGTAGCCACATTTTTAGTTAGTATCAATTAGCATAACTGAAACTGGTCTATTATTATACAGGGTTACAGTTCTGTACATTATATTTTGTTGCAAAGTCCACTGCTGCCATCTTCTGGCTTTCCAGCTAAAACTAGAAATTCATCCTTGTGATCGATTCTCACATGCTTCCACTGTTTGCTTCACTCTCAACTATCAGTACTACTGTGACTAGCAACGTTGTCATCATAGTGATCGCCAGATGGTCAATCTTGTTCAGGGCATAACGACTCCTTACCCCGATTAATAGATAATTCTTGGAGGGGTGGACTACTGATTTTATGGATAGTCAAAGTAGATTACTCAACCTCTGAGTTACTATATCATTTGTTGCTTCTACTGTTTCCTTCTTACACTTGCAAAATATGCAAAATCAGCCTTCATCATACGGTGGTACTGCTAATTATCAGCTCTCTAGGTATAAGTTTTCATAAGTAGAATGATCCTGCAGACATAGCTAAACAGAAGTTGTAAAGTTGTGCTCTGATACATAAGGATTGGAATAGAGGATTGACAAA</genome_strand>
        <mrna_strand>GGAAAAAAAAGTTATTTTGTACTTAGTTACAACTCCCCAGTAGAAAATAAGTTGTTGCAATGACCCTACTGGCATCCAATAGGCTCATGTGGTACTTAGAGATCACATAACATTCAAAATTCTGAATACTGTTAGAACTCATGTAGCCACATTTTTAGTTAGTATCAATTAGCATAACTGAAACTGGTCTATTATTATACAGGGTTACAGTTCTGTACATTATATTTTGTTGCAAAGTCCACTGCTGCCATCTTCTGGCTTTCCAGCTAAAACTAGAAATTCATCCTTGTGATCGATTCTCACATGCTTCCACTGTTTGCTTCACTCTCAACTATCAGTACTACTGTGACTAGCAACGTTGTCATCATAGTGATCGCCAGATGGTCAATCTTGTTCAGGGCATAACGACTCCTTACCCCGATTAATAGATAATTCTTGGAGGGGTGGACTACTGATTTTATGGATAGTCAAAGTAGATTACTCAACCTCTGAGTTACTATATCATTTGTTGCTTCTACTGTTTCCTTCTTACACTTGCAAAATATGCAAAATCAGCCTTCATCATACGGTGGTACTGCTAATTATCAGCTCTCTAGGTATAAGTTTTCATAAGTAGAATGATCCTGCAGACATAGCTAAACAGAAGTTGTAAAGTTGTGCTCTGATACATAAGGATTGGAATAGAGGATTGACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0191P09-jEJBQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U344226" ref_strand="+" ref_description="SGN-U344226        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: hypothetical(evalue: 2e-07, score=59.3)">
      <seq>ttattgtagatgaccaattttttcttcgaatacgaaattaaattacaatacacacaaaaaaaatatttgaattttttttatttaaactaaggaatgaaagaaaaaaacaaaataagaataagaaactcaaattattataataaaagaagtcaaaaaataatttttgtatgaaaaaattaaaatataccttgaactttgatagaagaatcatatatatccctaaatattttttttaaaaaaaaattagaagtaacaaatataaatttaaaactaattttttaactttcgttaaatgaagggtatatgtgagccattttctaacggcaggggtatatgtgagccgtttgtataacgataagggcatatatgaaccacttttattacgagggatatatcagctctaaatgacaaagttgagaggtatatcagacccttttccctattttttaaaatttcatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-jEJBQ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="4792" stop="5843"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5092" g_stop="5529" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="439" r_length="439" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-U344226" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U344226" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5092" e_stop="5529"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTGTAGATGACCAAATTTTTTCTTCGAATACGAAATTAAATTACAAAACACACAAAAAAATAGTTTAATTTTTTATTCTTTAAGCTAAGGAATGAAAG-AAAAAACAAAATAAGAATAAGAAATTCAAATAATTATAATAAAAGAAGTCAAAAAATAATTTATGTATGAAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATACCCCTAAATATTTTTTTT-AAAAAAAATTAGAAGTAATAAATATAAATTTAAAACTAATTTTTTAAAATCCGTTAAATGAAGGGTATATGTGAGCCATTTTGTAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGATAAAGGCATATATAAACCACTTTTATAACGAGAGGTATATCAGCTCCAAATGACAAAATTGAGAGGTATATCAGACCCTTTTCC</genome_strand>
        <mrna_strand>TTATTGTAGATGACC-AATTTTTTCTTCGAATACGAAATTAAATTACAATACACACAAAAAAAATATTTGAATTTTTTTTATTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGAATAAGAAACTCAAATTATTATAATAAAAGAAGTCAAAAAATAATTTTTGTATGAAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATATCCCTAAATATTTTTTTTAAAAAAAAATTAGAAGTAACAAATATAAATTTAAAACTAATTTTTTAACTTTCGTTAAATGAAGGGTATATGTGAGCCATTTTCTAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGATAAGGGCATATATGAACCACTTTTATTACGAGGGATATATCAGCTCTAAATGACAAAGTTGAGAGGTATATCAGACCCTTTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0191P09-jEJBQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326021" ref_strand="+" ref_description="SGN-U326021        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, similar to unknown protein (sp:Q9ZE28) | chr5:1873166-1876045 FORWARD | Aliases: None(evalue: 2e-37, score=152) genbank/nr: At5g06180(evalue: 2e-35, score=152)">
      <seq>ttggaaatcatcctaaagttcacatttggaacggtcaaggtacagctgatgcaatgtttgtattcctgtccctcgcagaagagaaatgtctcttcaatgagaaaataaacagcaaaaagaaacaagtaacagaagtttgagctttttgatgagctaaacaaaagggtgttctgatgtcaaatttaattgttactcagcagatcttgtatagagattcaacaaagaaatgggtagtatagtttgctattaaggaaaggataatcagagagatactttaatctttttccctcgaagaggagatattgctgatacttcaattttcgcctaattctcataattatttgtatttccttctgatgccactgacgtaatgtatacgagccttttacattaatacctttcaggtccaaatccacatatgggacatttggcttttgcagatgcttttgttattactgctgactcagttagtatgttaagcgaggcttgcagtacggggaaacctgtttatgtaattggtgctgagcgatgtacgtggaaattcaaagacttccatcaatccttgaaaaatcgaggagtggttcggccattcccgcgcaaagaagatatatctgaaagttggagctatagtcccctgaatgatactaaggaggctgctgctcatgtgattacagcactagccgaacgaggatggggattgccatcataatttctatttaccttgatccaggtatgtcgagggtctaccggaaacaacctcacaaaggtaggggtacggtcggtgtaagtgtactttattttatccaaatccctgatcacaagcagctcttgtatcctcccatcaataacaaatatttgctatgaagtggagattcattttatgttatcagaataatatagctataaatacaaactaagagtttaggattgtgcctcgtgccgaattcggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-jEJBQ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="16886" stop="18906"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17186" g_stop="17683" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="498" r_length="498" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17684" i_stop="17759" i_length="76">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.831" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17760" g_stop="17868" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="607" r_length="109" r_score="0.945"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17869" i_stop="18242" i_length="374">
            <donor d_prob="0.890" d_score="0.90"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18243" g_stop="18606" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="608" r_stop="932" r_length="325" r_score="0.857"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-U326021" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>971</cumulative_length_of_scored_exons>
        <coverage percentage="1.022" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U326021" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17186" e_stop="17683"/>
          <exon e_start="17760" e_stop="17868"/>
          <exon e_start="18243" e_stop="18606"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGAAATCATCCTAAAGTTCACATTTGGAACGGTCAAGGTACAGCTGATGCAATGTTTGTATTCCTGTCCCTCGCAGAAGAGAAATGTCTCTTCAATGAGAAAATAAACAGCAAAAAGAAACAAGTAACAGAAGTTTGAGCTTTTTGATGAGCTAAACAAAAGGGTGTTCTGATGTCAAATTTAATTGTTACTCAGCAGATCTTGTATAGAGATTCAACAAAGAAATGGGTAGTATAGTTTGCTATTAAGGAAAGGATAATCAGAGAGATACTTTAATCTTTTTCCCTCGAAGAGGAGATATTGCTGATACTTCAATTTTCGCCTAATTCTCATAATTATTTGTATTTCCTTCTGATGCCACTGACGTAATGTATACGAGCCTTTTACATTAATACCTTTCAGGTCCAAATCCACATATGGGACATTTGGCTTTTGCAGATGCTTTTGTTATTACTGCTGACTCAGTTAGTATGTTAAGCGAGGCTTGCAGTACGGGGTAAGTTGGCCTTTATGCTGACTCTTTTCAATTCGATGTCCCTTTTCTGTTATCCTTTTCATTAGCATTTCATCAGGAAACCTGTTTATGTAATTGGTGCTGAGCGATGTACGTGGAAATTCAGAGACTTCCATCAATCCTTGAAAAATCGAGGAGTGGTTCGTCCATTCCTTGGAAAAGAAGATGTGAGTAATAATTCTATTAATTTATATTCTAGGCTCCTACTAGGCACAAGGATAACATCACCCTTCTAGTTTTATTCTCCTTCGTTGAGTTTTTGCATGGACAGAAATGACATACTGATAAATATTGGTTTGCAGGAAGATAACTGTACAATATATCCTTCTCTATCCTCTAAAAGCATTATATAGTATTGAAATTCAATTAGAAGTGGTTAATTTTGCATGCTATTTGACGAAATATCTTCTATCTCTGGCACATCTTTTATTTGGAATTCAAGTGAATTCACCCGTGAACATTATGATGCTTACAGTCACTGATCATGAAAGAGCATGATGCCTGCAATCCAGAGTTTTGACTTCATCCTCTTATTTTGTAGATATCTGAAAGTTGGAGCTATAGTCCCCTGAATGATACTAAGGAGGCTGCTGCGCATGTGATTACCGCACTAGCCGAACGAGGATGGCGATTGCCATCATAATTTCTACTCTACTAAAGTAGTAGTAGTAAATTGATCCAGGTATGTCGAGGGTCTACTGGAAACAACCTCACAAAGGTAAGGGTACGGTCGGTGTAAGTGTACTTTATTTTATTAAAATGCCTGATCACAAGCAGCTCTTGTATCCTCCCATCAAATTGATTGAAGTTTTGTACAATAACAAATATTTGCTATGAAGTGGAGATTCATTTTATGTCATCAGAATAATATAGCTATAAATACAAACTACGAATTTAGGATTGTG</genome_strand>
        <mrna_strand>TTGGAAATCATCCTAAAGTTCACATTTGGAACGGTCAAGGTACAGCTGATGCAATGTTTGTATTCCTGTCCCTCGCAGAAGAGAAATGTCTCTTCAATGAGAAAATAAACAGCAAAAAGAAACAAGTAACAGAAGTTTGAGCTTTTTGATGAGCTAAACAAAAGGGTGTTCTGATGTCAAATTTAATTGTTACTCAGCAGATCTTGTATAGAGATTCAACAAAGAAATGGGTAGTATAGTTTGCTATTAAGGAAAGGATAATCAGAGAGATACTTTAATCTTTTTCCCTCGAAGAGGAGATATTGCTGATACTTCAATTTTCGCCTAATTCTCATAATTATTTGTATTTCCTTCTGATGCCACTGACGTAATGTATACGAGCCTTTTACATTAATACCTTTCAGGTCCAAATCCACATATGGGACATTTGGCTTTTGCAGATGCTTTTGTTATTACTGCTGACTCAGTTAGTATGTTAAGCGAGGCTTGCAGTACGGG............................................................................GAAACCTGTTTATGTAATTGGTGCTGAGCGATGTACGTGGAAATTCAAAGACTTCCATCAATCCTTGAAAAATCGAGGAGTGGTTCGGCCATTCCCGCGCAAAGAAGAT......................................................................................................................................................................................................................................................................................................................................................................................ATATCTGAAAGTTGGAGCTATAGTCCCCTGAATGATACTAAGGAGGCTGCTGCTCATGTGATTACAGCACTAGCCGAACGAGGATGGGGATTGCCATCATAA----T--T-T-C-----TA-T--T--TACCTTGATCCAGGTATGTCGAGGGTCTACCGGAAACAACCTCACAAAGGTAGGGGTACGGTCGGTGTAAGTGTACTTTATTTTATCCAAATCCCTGATCACAAGCAGCTCTTGTATCCT-CC--C-----------A------T-CAATAACAAATATTTGCTATGAAGTGGAGATTCATTTTATGTTATCAGAATAATATAGCTATAAATACAAACTAAGAGTTTAGGATTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0191P09-jEJBQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U338295" ref_strand="+" ref_description="SGN-U338295        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr5:7397426-7400940 REVERSE | Aliases: MWD9.14, MWD9_14(evalue: 3e-16, score=82.8) genbank/nr: gi|18420465|ref|NP_568417.1| expressed protein [Arabidopsis thaliana] gi|16649091|gb|AAL24397.1| Unknown protein [Arabidopsis thaliana] gi|22136260|gb|AAM91208.1| unknown protein [Arabidopsis thaliana](evalue: 2e-14, score=82.8)">
      <seq>ttggaaatcatcctaaagttcacatttggaacggtcaaggtacagctgatgcaatgtttgtattcctgtccctcgcagaagagaaatgtctcttcaatgagaaaataaacagcaaaaagaaacaagtaacagaagtttgagctttttgatgagctaaacaaaagggtgttctgatgtcaaatttaattgttactcagcagatcttgtatagagattcaacaaagaaatgggtagtatagtttgctattaaggaaaggataatcagagagatactttaatctttttccctcgaagaggagatattgctgatacttcaattttcgcctaattctcataattatttgtatttccttctgatgccactgacgtaatgtatacgagccttttacattaatacctttcaggtccaaatccacatatgggacatttggcttttgcagatgcttttgttattactgctgactcagttagtatgttaagcgaggcttgcagtacggggtaagttggcctttatgctgactcttttcaattcgatgtcccttttctgttatccttttcattagcatttcatcaggaaacctgtttatgtaattggtgctgagcgatgtacgtggaaattcagagacttccatcaatccttgaaaaatcgaggagtggttcgtccattccttggaaaagaaatatatctgaaagttggagctatagtcccctgaatgatactaaggaggctgctgcgcatgtgattaccgcactagccgaacgaggatgggcgatggncatcatattctactctactaaagtagtagtagtaatttgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-jEJBQ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="16886" stop="18680"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17186" g_stop="17868" g_length="683"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="682" r_length="682" r_score="0.999"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17869" i_stop="18242" i_length="374">
            <donor d_prob="0.890" d_score="0.98"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18243" g_stop="18380" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="683" r_stop="819" r_length="137" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-U338295" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>821</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U338295" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17186" e_stop="17868"/>
          <exon e_start="18243" e_stop="18380"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGAAATCATCCTAAAGTTCACATTTGGAACGGTCAAGGTACAGCTGATGCAATGTTTGTATTCCTGTCCCTCGCAGAAGAGAAATGTCTCTTCAATGAGAAAATAAACAGCAAAAAGAAACAAGTAACAGAAGTTTGAGCTTTTTGATGAGCTAAACAAAAGGGTGTTCTGATGTCAAATTTAATTGTTACTCAGCAGATCTTGTATAGAGATTCAACAAAGAAATGGGTAGTATAGTTTGCTATTAAGGAAAGGATAATCAGAGAGATACTTTAATCTTTTTCCCTCGAAGAGGAGATATTGCTGATACTTCAATTTTCGCCTAATTCTCATAATTATTTGTATTTCCTTCTGATGCCACTGACGTAATGTATACGAGCCTTTTACATTAATACCTTTCAGGTCCAAATCCACATATGGGACATTTGGCTTTTGCAGATGCTTTTGTTATTACTGCTGACTCAGTTAGTATGTTAAGCGAGGCTTGCAGTACGGGGTAAGTTGGCCTTTATGCTGACTCTTTTCAATTCGATGTCCCTTTTCTGTTATCCTTTTCATTAGCATTTCATCAGGAAACCTGTTTATGTAATTGGTGCTGAGCGATGTACGTGGAAATTCAGAGACTTCCATCAATCCTTGAAAAATCGAGGAGTGGTTCGTCCATTCCTTGGAAAAGAAGATGTGAGTAATAATTCTATTAATTTATATTCTAGGCTCCTACTAGGCACAAGGATAACATCACCCTTCTAGTTTTATTCTCCTTCGTTGAGTTTTTGCATGGACAGAAATGACATACTGATAAATATTGGTTTGCAGGAAGATAACTGTACAATATATCCTTCTCTATCCTCTAAAAGCATTATATAGTATTGAAATTCAATTAGAAGTGGTTAATTTTGCATGCTATTTGACGAAATATCTTCTATCTCTGGCACATCTTTTATTTGGAATTCAAGTGAATTCACCCGTGAACATTATGATGCTTACAGTCACTGATCATGAAAGAGCATGATGCCTGCAATCCAGAGTTTTGACTTCATCCTCTTATTTTGTAGATATCTGAAAGTTGGAGCTATAGTCCCCTGAATGATACTAAGGAGGCTGCTGCGCATGTGATTACCGCACTAGCCGAACGAGGAT-GGCGATTGCCATCATAATTTCTACTCTACTAAAGTAGTAGTAGTAAATTGATC</genome_strand>
        <mrna_strand>TTGGAAATCATCCTAAAGTTCACATTTGGAACGGTCAAGGTACAGCTGATGCAATGTTTGTATTCCTGTCCCTCGCAGAAGAGAAATGTCTCTTCAATGAGAAAATAAACAGCAAAAAGAAACAAGTAACAGAAGTTTGAGCTTTTTGATGAGCTAAACAAAAGGGTGTTCTGATGTCAAATTTAATTGTTACTCAGCAGATCTTGTATAGAGATTCAACAAAGAAATGGGTAGTATAGTTTGCTATTAAGGAAAGGATAATCAGAGAGATACTTTAATCTTTTTCCCTCGAAGAGGAGATATTGCTGATACTTCAATTTTCGCCTAATTCTCATAATTATTTGTATTTCCTTCTGATGCCACTGACGTAATGTATACGAGCCTTTTACATTAATACCTTTCAGGTCCAAATCCACATATGGGACATTTGGCTTTTGCAGATGCTTTTGTTATTACTGCTGACTCAGTTAGTATGTTAAGCGAGGCTTGCAGTACGGGGTAAGTTGGCCTTTATGCTGACTCTTTTCAATTCGATGTCCCTTTTCTGTTATCCTTTTCATTAGCATTTCATCAGGAAACCTGTTTATGTAATTGGTGCTGAGCGATGTACGTGGAAATTCAGAGACTTCCATCAATCCTTGAAAAATCGAGGAGTGGTTCGTCCATTCCTTGGAAAAGAA-AT......................................................................................................................................................................................................................................................................................................................................................................................ATATCTGAAAGTTGGAGCTATAGTCCCCTGAATGATACTAAGGAGGCTGCTGCGCATGTGATTACCGCACTAGCCGAACGAGGATGGGCGATGGNCATCAT-A-TTCTACTCTACTAAAGTAGTAGTAGTAATTTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0191P09-jEJBQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U342381" ref_strand="-" ref_description="SGN-U342381        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>aataataaaacattgtttgtgagcttggtaggatcgtacttgaaaacatgtgttgcaccggggctagggaacaagatatatttttcaatgtttcacaatgaaaatggtgttttctattgtttagtcaatcgcaaatattactcttctgattatttgggcatcaaaacttattcaagtccaaatattttcaacttcattcgaccaatatcatgcattttggatcgaatcagaggatgagtgatcgtatagttccatttttgttcttatcggagacattcccggagccacggggattaattaggtatgttgttgttggcactggtgctaaaaattactttttatgacatattaccgtgtaatagtgccaatatgtggagaaatccaaaagataaagtgtcattagtatattttgtgtatcaaattcttttaattaataaagtagtttttatttaaaaaaaaaaaaaaaaaaanaactcgagactagttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-jEJBQ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="-" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="25448" stop="24394"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25148" g_stop="24697" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="452" r_length="452" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="453" polyA_stop="473"/>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="-" ref_id="SGN-U342381" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="0.924" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U342381" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="25148" e_stop="24697"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAATAAAACATTGTTTGTGAGCTTGGTAGGATCGTACTTGAAAACATGTGTTGCACCGGGGCTAGGGAACAAGATATATTTTTCAATGTTTCACAATGAAAATGGTGTTTTCTATTGTTTAGTCAATCGCAAATATTACTCTTCTGATTATTTGGGCATCAAAACTTATTCAAGTCCAAATATTTTCAACTTCATTCGACCAATATCATGCATTTTGGATCGAATCAGAGGATGAGTGATCGTATAGTTCCATTTTTGTTCTTATCGGAGACATTCCCGGAGCCACGGGGATTAATTAGGTATGTTGTTGTTGGCACTGGTGCTAAAAATTACTTTTTATGACATATTACCGTGTAATAGTGCCAATATGTGGAGAAATCCAAAAGATAAAGTGTCATTAGTATATTTTGTGTATCAAATTCTTTTAATTAATAAAGTAGTTTTTATTTA</genome_strand>
        <mrna_strand>AATAATAAAACATTGTTTGTGAGCTTGGTAGGATCGTACTTGAAAACATGTGTTGCACCGGGGCTAGGGAACAAGATATATTTTTCAATGTTTCACAATGAAAATGGTGTTTTCTATTGTTTAGTCAATCGCAAATATTACTCTTCTGATTATTTGGGCATCAAAACTTATTCAAGTCCAAATATTTTCAACTTCATTCGACCAATATCATGCATTTTGGATCGAATCAGAGGATGAGTGATCGTATAGTTCCATTTTTGTTCTTATCGGAGACATTCCCGGAGCCACGGGGATTAATTAGGTATGTTGTTGTTGGCACTGGTGCTAAAAATTACTTTTTATGACATATTACCGTGTAATAGTGCCAATATGTGGAGAAATCCAAAAGATAAAGTGTCATTAGTATATTTTGTGTATCAAATTCTTTTAATTAATAAAGTAGTTTTTATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0191P09-jEJBQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U340253" ref_strand="+" ref_description="SGN-U340253        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>cgtttttttacatggaggctgcattgtggtcagatggtataccatcggacatactcggattaatatcatcacgtcttattgctgcggaatattttatttttcgtgctgtttgtaaaaaatggagacacacacccgttacccctccacattgtcctgctcaatcagaaaaatcgcctcgtttgttcacattgcgtggagatactggaatagttgatttctttcatcccgtgtataattttatgacaactacgtctattccaattccgaaattaatgaattctcgaattcgaagttcaaaaggtaattggttactgatgagtcatggtgattgcgatatgttttttttcaattttattagcaatgagataattgaacttcctaatctacaaggggagagtcgatatatcacttgttggatattttcatgtcctccaaactcgtcgtcatctgcttgctttgttgttggtttggactacagtggtaatcctccagacgtttgcatcatcaaaattggagagactaattggacgtttcataacttaagtgatctagcagatacatataaacattttgcattaacgggatgcagtagtccaatattttttagaaataatattgtttatgtagtgggagataaaggaaatctgggtatacttaccatcaatgaaaactcaactcctagttgggaattttatggtaaaccatttcgaggtagaagagtaaagtcaatcaactatgttttcacggcagaagatgtcgaaaacaaaggaatattagttgtatttctatctcaccacgaagggaaagtagaggtttggaggtacaaaatgaatgggaaaggtgttggagagggaaaaaataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-jEJBQ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="-" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="26319" stop="24860"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26021" g_stop="25160" g_length="862"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="862" r_length="862" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="-" ref_id="SGN-U340253" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>862</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U340253" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26021" e_stop="25160"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTTACAATGGAGGCTGCATTGTGGTCAGATGGTATACCATCGGACATACTCGGATTAATATCATCACGTCTTATTGCTGCGGAATATTTTATTTTTCGTGCTGTTTGTAAAAAATGGAGACACACACCCGTTACCCCTCCACATTGTCCTGCTCAATCAGAAAAATCGCCTCGTTTGTTCACATTGCGTGGAGATACTGGAATAGTTGATTTCTTTCATCCCGTGTATAATTTTATGACAACTACGTCTATTCCAATTCCGAAATTAATGAATTCTCGAATTCGAAGTTCAAAAGGTAATTGGTTACTGATGAGTCATGGTGATTGCGATATGTTTTTTTTCAATTTTATTAGCAATGAGATAATTGAACTTCCTAATCTACAAGGGGAGAGTCGATATATCACTTGTTGGATATTTTCATGTCCTCCAAACTCGTCGTCATCTGCTTGCTTTGTTGTTGGTTTGGACTACAGTGGTAATCCTCCAGACGTTTGCATCATCAAAATTGGAGAGACTAATTGGACGTTTCATAACTTAAGTGATCTAGCAGATACATATAAACATTTTGCATTAACGGGATGCAGTAGTCCAATATTTTTTAGAAATAATATTGTTTATGTAGTGGGAGATAAAGGAAATCTGGGTATACTTACCATCAATGAAAACTCAACTCCTAGTTGGGAATTTTATGGTAAACCATTTCGAGGTAGAAGAGTAAAGTCAATCAACTATGTTTTCACGGCAGAAGATGTCGAAAACAAAGGAATATTAGTTGTATTTCTATCTCACCACGAAGGGAAAGTAGAGGTTTGGAGGTACAAAATGAAT-GGAGAGGTGTTGGAGAGGGAAGAAATAA</genome_strand>
        <mrna_strand>CGTTTTTTTAC-ATGGAGGCTGCATTGTGGTCAGATGGTATACCATCGGACATACTCGGATTAATATCATCACGTCTTATTGCTGCGGAATATTTTATTTTTCGTGCTGTTTGTAAAAAATGGAGACACACACCCGTTACCCCTCCACATTGTCCTGCTCAATCAGAAAAATCGCCTCGTTTGTTCACATTGCGTGGAGATACTGGAATAGTTGATTTCTTTCATCCCGTGTATAATTTTATGACAACTACGTCTATTCCAATTCCGAAATTAATGAATTCTCGAATTCGAAGTTCAAAAGGTAATTGGTTACTGATGAGTCATGGTGATTGCGATATGTTTTTTTTCAATTTTATTAGCAATGAGATAATTGAACTTCCTAATCTACAAGGGGAGAGTCGATATATCACTTGTTGGATATTTTCATGTCCTCCAAACTCGTCGTCATCTGCTTGCTTTGTTGTTGGTTTGGACTACAGTGGTAATCCTCCAGACGTTTGCATCATCAAAATTGGAGAGACTAATTGGACGTTTCATAACTTAAGTGATCTAGCAGATACATATAAACATTTTGCATTAACGGGATGCAGTAGTCCAATATTTTTTAGAAATAATATTGTTTATGTAGTGGGAGATAAAGGAAATCTGGGTATACTTACCATCAATGAAAACTCAACTCCTAGTTGGGAATTTTATGGTAAACCATTTCGAGGTAGAAGAGTAAAGTCAATCAACTATGTTTTCACGGCAGAAGATGTCGAAAACAAAGGAATATTAGTTGTATTTCTATCTCACCACGAAGGGAAAGTAGAGGTTTGGAGGTACAAAATGAATGGGAAAGGTGTTGGAGAGGGAAAAAATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0191P09-jEJBQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326936" ref_strand="+" ref_description="SGN-U326936        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | hydroxyproline-rich glycoprotein family protein, contains proline-rich extensin domains, INTERPRO:IPR002965; contains some similarity to transcription factor (Danio rerio) gi:15617376, emb:CAC69871; similar to yeast dcp1 | chr1:2638190-2640551 FORWARD | Aliases: T27G7.7, T27G7_7(evalue: 9e-66, score=246) genbank/nr: unknown(evalue: 2e-68, score=261)">
      <seq>aaatacttttcccactccactctctacttctccatattttcttctccgatcgacaaatcgattctccggttctctctataatctatctgcttctgtacgatcaatcggaaagttctagaagaagatgtcgtcgaattcaaagttaatgccgaatctggatgagcgaagtacgaagatgctaaacctcactgtgctacagagaatcgatccgcgtattgaggagatcctcatcacagctgctcatgttacgttgtacgagttcaacgtcgacctcaatcaatggagccgcaaggaggttgaaggttctttctttgtagttaagaggagtgctcagccaaggttccagttcattgttatgaaccgcaggagtgcagaaaatatggtggaagatctcttgggagactttgagtttgaggttcaggttccatacttgttgtatcgcaatgcagcccaagaagtcaatggtatttggttttacaatgcacatgaaattgaggaggttgcagatctcttcggcagaattttaggtgaatactcaaaggttcccctgaagccacagctaagaaaaagtgagtttgcagatcatgaggtggtcccaatgagtacagcaatagaagggacatctggaccagcatttaccacctctacggatgggtttggtgctgatgattcttcctttatgaactttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-jEJBQ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="30930" stop="37225"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31230" g_stop="31512" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31513" i_stop="32576" i_length="1064">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32577" g_stop="32617" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="324" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32618" i_stop="33961" i_length="1344">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33962" g_stop="34011" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="374" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34012" i_stop="34177" i_length="166">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.674" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34178" g_stop="34322" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="519" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34323" i_stop="35167" i_length="845">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="35168" g_stop="35218" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="570" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="35219" i_stop="36806" i_length="1588">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="36807" g_stop="36925" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="689" r_length="119" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-U326936" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U326936" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31230" e_stop="31512"/>
          <exon e_start="32577" e_stop="32617"/>
          <exon e_start="33962" e_stop="34011"/>
          <exon e_start="34178" e_stop="34322"/>
          <exon e_start="35168" e_stop="35218"/>
          <exon e_start="36807" e_stop="36925"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATACTTTTCCCACTCCACTCTCTACTTCTCCATATTTTCTTCTCCGATCGACAAATCGATTCTCCGGTTCTCTCTATAATCTATCTGCTTCTGTACGATCAATCGGAAAGTTCTAGAAGAAGATGTCGTCGAATTCAAAGTTAATGCCGAATCTGGATGAGCGAAGTACGAAGATGCTAAACCTCACTGTGCTACAGAGAATCGATCCGCGTATTGAGGAGATCCTCATCACAGCTGCTCATGTTACGTTGTACGAGTTCAACGTCGACCTCAATCAATGGGTTCGTAAACTTGATTTTCGTTTAAATTTCTGAAAAGGAGATTTATATTTCATCGAGTTTAGGAAATAGAGGCTAATTTGGTGTGATAATTGTTGAATTAAATTTGGCATAGTCAGTATTCATTGTTTTAATATCCAGTAAGTATTGAATTTTGTTTTATGTAGATATATGTGAATATCTGAGTCTCTATGCGTATATTGATGGATTTGATTGTAAAAAGTGATTTGAAATAACACAGTAAATTTCAGAATTGATCTCCTTATAGTTCGCTGTTACTTCAAAAATTTGTGCCTTATTGTGTGTTGTGGTATGTATGGACTTCTGTTTTATGTTGATATATGTGAATGTTTGAGTGATTTCTGGAATATTAATCTCTCTATGTGTATATTGATGGATTTGATTGTAAAAAATGTGCCTTGGGATAGTTCTACACGGTAAACTTCATAATTGATCTTCTTGTACTTTTTTGCTTTTTGCTGTTTTACAGAAACTAGTGTCTTATTGTGTGTTGCCGTGTGTATGTAATACTGTTTTATGTAGATATATGTGAATATTTGAGTGATTTCTAGGAGTATACATTGATCTCTCTATGTGTATATTGATGGATTTGATCATTAAAGTTCCTATGGATAGTTCTGTAGAGTAAATTTCATAATTGATCTCCGTATAGTTCTCTGTTGTTACTATAAAAACTTGTGCCTTATTATGTGTTGCAGAATGTATCGAATGTTGATTCAGTTGTGCGTGATTTAGAAAGTCACGGTGTATACTTTTTAATATGTGCATTAACTTAGAAAACTTGCTGAAATGATCTTAACACCGAAGTTTGCCTTAATCCTAAGCTAGTTGCAATCAACAAATAAATCTCACTTGGACGCAATTGTCATGATATACATCATTGGATGAAAAGGTGGTAAATTAGATGTTTTGGACAAATATATTCCAAGGGATCCGCTGTGTACTCCTGCTTCCCGCCTTTTTGCCTATTTATGAAGCAATCAATGGGTCTTCTTGAAATATTGTCTTAAAGAATAAATTGATTGAATGTTTAATTTGGATTTCAGAGCCGCAAGGAGGTTGAAGGTTCTTTCTTTGTAGTTAAGAGGTATGCTTGCAATATTCCATGTATCTGGTTTTGTTTTCTATTTAAATATAAAGTGTTTATATCTGCCTTTGTTTCATATGGCGGTGTATCAAATTTAGCAGGTATTTTCTGTATGGTGCTTGTCTGAACATTCATATTCATGGCAAAGTTCCAAGCAAACTGGTCTAGCCCCAATTTAGGAGCTCAAGGGCTCAGAGTTGATTCCAGTGGGGGTGAACCAGCCCAAACCTGACCTTAAACCCTTGGGAGGGGTATACTCTCGGACCCCTTTTTTCCACTAAGAAATTTGATTGAAGAATCTAGAGACGATTTATATAAAAGAAAATTGTGTTCCCTTAGAATAACTCACTTACACACAAGTAGATGAACATAAATTAAAAAAATAATTGAAGAAAGAGATTGGACAATAGTAAGAAATTAGAAATATGGACAATATTTAATGCATTGAAATTGAATTAATATCCTTAACTTGCCTAGATACCAAACAAGCACATCTATTCTAAAAGGGTTGGTGGGTTCGTTTTGCTTCTGAAATTGACATAGTTCTCATCTGTATAAATAAGCAATAACTCTTCTAAATTGTAACCCTGAATGTTTCGGTATGGTGTCAATGAATTCAATTAGGGAATTTGGGGTTAATGTGTAGGCATCTAACAAGCCGTTGCCACTCCCCCCCCCCCCCTCCCCCCTCTTTGAACACCGTTCAGTCCATCGGCCTTGTGCTATGTGGCTGGCCTAGCAATTCCCGCGGGTCAGACACCCCTTCATGGGGTTTATGTTGATCGTGGATTGGACAAGCCTACTCAGGGGTCATTTGGTAGAATGTATTAGGAAAAATAATGCATTTATTGGCCTTGTGTATTACTATTACGTTGCTCGTTACTCTTTTCCAATCTATGCATTAGTTATACACTATATTGTGTATTAAGGAATGCATTACTAATACTATGGATTTGTAGGTATTAATAATGCAATGGTTTACACTCTACCAAACCACCCCTTAAAGTTAAATTTCTTTTTATTTTCTTATGACAAGGGAACCCGCAGCCGCTACCCTTTGGGTGCGCATAGGGTAAAACTCCTGCTCCTATGCAATAGCTCGCAAACTACATAGGAGAGGTAACCCGCACCCGGATGTCTAGTGTTTTCTGAAAAACAGTTTCTAATTCAGCTTTTGTCCGAAACTATTATCACGCTGTGCAAATAGCATATAATTATGTGATGGCTTCTTTGGCTTTTAGGTTATTTTTCATGTAATATTTTGGGAATCTGATGGATTTGATGGATTATGGCCTAAGGAAGTTGAATTACCAGATATCGTTGTTGTTGGTTATGTTATTTTAGGAGTGCTCAGCCAAGGTTCCAGTTCATTGTTATGAACCGCAGGAGTGCAGGTATTATCCCATTTCTTCTTTTAATAATATATCTCAGGCCTCTCCTTTTCAATTCATAGGGCAAAACATTATGAATTCTTTATTTTAAGTTGTCCCTTTTATGATGTTCGAATTAATGCCTCATATGAATGATTTCCTTTTTGACATCTAAGTTCATATGAAGCAGAAAATATGGTGGAAGATCTCTTGGGAGACTTTGAGTTTGAGGTTCAGGTTCCATACTTGTTGTATCGCAATGCAGCCCAAGAAGTCAATGGTATTTGGTTTTACAATGCACATGAAATTGAGGAGGTTGCAGATCTCTTCGGCAGGTTGGCATCTTCTTCAGTTGAATTATTCTTGTATACATTTATGATAGAGAGCAAAACAAATAAGTGAACAACCTACATAGAGAAAATGTTGTTAAGGGCTGGTTATTATTCTTGTATTTCGAATTACTTGTGGTTGACTGTTATTATTGGAACTAGGCTGAATTGATTTTTATAATGGATGGTAGTATGAGTTGTCTTTGTCAAGGATAATCATGACAGGGTCTTTCTATCAAAAGACATTAGGTTGAAGGCTGCTATAAATGAAATATTTCAAATTTCAAAGCTTGTTTAGTCAAATTATGACATACCTTAGGCTTTAAATATGTGATCTTAATGACATTTAACATTTATTTTAGCGCGATGGTTATGTTGCCAGTTTCTTTGGACTATTTTTCTCTTGAGCCGAAGATCTATTGGAATAATCAATCTCTCTACCTCTGAGGTAGGGTAAGGTTTGTGTACACTCTACCCGCCCTAGATCCACTTTGTGGGACTATTCTGGGTATGTTGTTGTTGTTGGTTATGTTGCCAGTCTCTGTTAAGTATTCAGTTCTGTGTTTTTGTTAATGGAGGTGTCTAATTTGTATGCAATCCATTTCGTCTTTGTGTTACATGATATAATGGCATTTATCTTATAGAAATACCAGTTAGTTATTGTGTTATATCGGTAAGTAACTTGATAAAGAAGTTTGTTATATCGGTCGATGGAAATGACATCAAAACGATTTATTGTTAGTTCGTTTTAGTGGTGCAGGGCATGTGAAGTAATTGGGTCATTTTTCTTACGTAATCATGGCGCATAATCTGCAACTTGTATAATTTTACTTTGATGTGGTGGATTCCAGAATTTTAGGTGAATACTCAAAGGTTCCCCTGAAGCCACAGCTAAGAAAAAGGTGCGGCGTCATTGATTCTTCCCCTGGTTCCCTTTTTTCTTTTTCTGTGAATTAAGATGTTTGTCAAGTGATTTCCTTATAAGCACAAGTTATTTGCCACAACTCATGAATATTCTTGTTTCTGGTGAAGCTATAGCATTTCCATATTTTAGTACATGGTAAGCAACTGTTTCATTGCTACAGCATGATAGAAGATAAGTACTAAGAATCAGTTTGATCTAAGGCGTAAGAAAAATAATCTCTGCAAAATTGTGATTATCAATTGTTGGTTCCTATGTAATCATACATGTATTATTTTATGTGGAATATCAATACGCAGATTAGTACTCAACCTTTTAAGTGTTGTGTTATGTTCTTAGTTGAGTTTGTATGAATTCCAAGTTATTTTAGGTCTTCAAAGATTTTTTCCTTTGATATGTGAATCGGTGAATGTATTCCATCTATTTTTTAGCACTCTTAATTATCCCAACAATGTGACAACAGATTAGTTAATTTGGAAGTCTTCGTGAGATTAATTGGTGCAATCTCTGATGACCTCTCTCATGTCCTTATGCAATGACACTTGCACCCTCTAGGGGATGGGATCATTTCTAATCATGTCTAATTTTGTATGATGATATATCTATCCTAACATCTGTATTTTAACGGCACTTGTTTCCCAACATTCACTTTTATATAAATAAACCTTGTTGGCCTTAGAATTGGTCTGTAGAACTTTTTTGTCCCTTTGATAGGTTTCATATCATATTTTGTTCCACTTTTGTAGCATTCCTCAGCTACAACTAGCCTATTTTACTTCAATATATTCATCAATCAAGTCGTTCTTCTAAAATATATACATTTAATTAATTTTTAATTCGATGATAAAACCAATATATACATTCCAATTAAATACTAGTGCCCCCCCCCCCCCCCCTTAAAAACTATTACATCCTTAAGAGAAAGACTGCAAAGAAATTATCTAATTCCCCTATGCCAGATGGATACATCTCCTGGTGTCGGATAATTTTTCTTTATAAATGGATATAAGGAGTACATATCACAATAGTACTTAAGCAGATGTTTCTTTTACTTTTAGTAAATATATTTAAAGTAAGCTAGTTAACCTACAAGTTTGAGTTTTCCTATTGGCTGTAGGAAACTATCATGGTAAGTGAGACAACTTTAACCAATATGAATATAAGTCAATAATATGGATGCTGTTGGCAACACTTCCTGCTCATTTCTTTGCTTGTGGAGAGAACATATAGCAGAATCTGAACTTTTTACTTTCCTAGAGTTGGTCTTTCATTTATGATTTCTCATAGATCTTCAGGATCCAACTTAAGCAAAGGCACTTACGGAAGAAAAGAGGAAATAGAGAAATAATCAATGACTTTGTTATCTTGTATCCATTGTCAATTTTCCCTTGTCAGCATATTTGTCCAGAAGGGGTGACTAAATCAATGTTTGTTACTCTTATAAAAAAAGGTCAATGTTTGTTGCTCTTCAGCTATTAATTTCTGTGTTTCTTGATCCTCCCCCCTTCTTTGGTGCAGTTTTGTTTCTACTCTAATTTTTAACTTTTCCCTGATGTTTTTAAGTGCAGTGAGTTTGCAGATCATGAGGTGGTCCCAATGAGTACAGCAATAGAAGGGACATCTGGACCAGCATTTACCACCTCTACGGATGGGTTTGGTGCTGATGATTCTTCCTTTATGAACTTTT</genome_strand>
        <mrna_strand>AAATACTTTTCCCACTCCACTCTCTACTTCTCCATATTTTCTTCTCCGATCGACAAATCGATTCTCCGGTTCTCTCTATAATCTATCTGCTTCTGTACGATCAATCGGAAAGTTCTAGAAGAAGATGTCGTCGAATTCAAAGTTAATGCCGAATCTGGATGAGCGAAGTACGAAGATGCTAAACCTCACTGTGCTACAGAGAATCGATCCGCGTATTGAGGAGATCCTCATCACAGCTGCTCATGTTACGTTGTACGAGTTCAACGTCGACCTCAATCAATGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCGCAAGGAGGTTGAAGGTTCTTTCTTTGTAGTTAAGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTGCTCAGCCAAGGTTCCAGTTCATTGTTATGAACCGCAGGAGTGCAG......................................................................................................................................................................AAAATATGGTGGAAGATCTCTTGGGAGACTTTGAGTTTGAGGTTCAGGTTCCATACTTGTTGTATCGCAATGCAGCCCAAGAAGTCAATGGTATTTGGTTTTACAATGCACATGAAATTGAGGAGGTTGCAGATCTCTTCGGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTTAGGTGAATACTCAAAGGTTCCCCTGAAGCCACAGCTAAGAAAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGTTTGCAGATCATGAGGTGGTCCCAATGAGTACAGCAATAGAAGGGACATCTGGACCAGCATTTACCACCTCTACGGATGGGTTTGGTGCTGATGATTCTTCCTTTATGAACTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0191P09-jEJBQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U331409" ref_strand="+" ref_description="SGN-U331409        Tomato 200607 #1 [2 ESTs aligned]">
      <seq>attttgcaagtctcattacctgttcagtcagctccatcacctcctcgacagtcacgtcgcgattctgctaacctgatcaatagtactaattaccctgcaaatcttgtgaagccttctttctttacaccccctgtgtcacctgtattggtgacaacttctgtctcctcagctacatcaactcccgtcctttatcctcatgtgaatccacaacgcccacatggtacacttttagttcaacccttccgaacacctacttcgcctccatttttcacttttactcagattcctccacaaagtgtgacactaagcagagagaaggttcaagacgtgcttttaatgcttgttcaggacaatcagtttatcgacttggtctaccaaaagttgcttaaagcacattcatgattccgtgagaagtgtggtgatgttgtagatcttgataccatgtaaaagtagtttgtacatatttgttttttttgctggggattggacttaccttcttttcacctcacgaagagatcgactacacctatgacttgatgtaatatatgaaacttggacaatcctgatgaaagtctatgaacaattgaatatcgacaatggcaaaccttttaaacatttctgtaaattctatgcacagttctggtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaactcgaaactagttctcagaactag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-jEJBQ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="37655" stop="39890"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37955" g_stop="38302" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="348" r_length="348" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38303" i_stop="39290" i_length="988">
            <donor d_prob="0.883" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39291" g_stop="39584" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="642" r_length="294" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="649" polyA_stop="676"/>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-U331409" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="0.918" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U331409" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37955" e_stop="38302"/>
          <exon e_start="39291" e_stop="39584"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTGCAAGTCTCATTACCTGTTCAGTCAGCTCCATCACCTCCTCGACAGTCACGCCGCGATTCTGCTAACCTGATCAATAGTACTAATTACCCTGCAAATCTTGTGAAGCCTTCTTTCTTTACACCCCCTGTGTCACCTGTATTGGTGACAACTTCTGTCTCCTCAGCTACATCAACTCCCGTCCTTTATCCTCATGTGAATCCACAACGCCCACATGGTACACTTCTAGTTCAACCCTTCCGAACACCTACTTCGCCTCCATTTCTCACTTCTACTCAGATTCCTCCACAAAGTGTGACACTAAGCAGAGAGAAGGTTCAAGACGTGCTTCTAATGCTTGTTCAGGTATATCCAGCCATCCAGGATTTAATTTATGTACTCTGCCTGCTATTCGGATGACTACAACTGTGTTCATTAATTATAGTCATTGCTGGGTGCATCTTATCTGTACTTGAACAGTAATTGAATTCCGTTCAACTGGATAAATCTCGGTCATTTTATCAATAAAATTTGTGGACATGACGTATTATCGAAACTGCTTATTTGAAAACACATTCAGATTTTGGAGGGGGGGTTCAGCGATTGTAACTTCAGTCTGACTTGTGTGCACAATCGAAGGATCCTTGTAAATAACTGAGTTTAAAATGCATATGCTGGCTCTGAGTTCTTTCTTCTTTTTCTGTTTTTTTTTTTTTTTTTTGGGGGGGGGGGGGGAAAGGAGGGGGAGGGCGGGGTAAAGAATGCTAGATCTAAGTTCTTATTTACTTTATCAAGATCTCTCGGTTTTATTTATTTAAGTACTTAAAGTTGGTTAAATAATTAAAAGATATCTGTTATTGTAGAAGTTACATCCAAGGTGGCTTGTTTAAATTTTTTAACTTTTAACTGATGAATCATCAGTTAGTATCTTAAGATGCCCCGTCAAATTAATTCTTGGTTTTGACTTCATATTTCTTCTAATGTGCAATTTCCTTTTCAATGTTTAGAGAGCTATAGTTCCCATCTGCTGTCTAAAGTCTAAACAAGTGAAAAGTTTCTTTTTGGAAAGAGTCTCTTTAAGTTCTGGATCTCATTTCCAGTTGGATCTATTTTACACGTAATCTCTAGCTCGACCTGTAACTTGGCACATTGCCACCAGCCTATTCCTGAAAATACTGAAAAATGTTCGACCAACCATTGGTGAATGGTTGAGATGAAGAATGCCTTGGCATGATGATCATGATTAGATTTTAGTAATTGTATCATTGTAGTTTCATCAATAACATGCAGCTCACATACATGATAGTTTCTATTATTGAAGAAAAAATGGTTGTTTTCTTAATTTTTTTTGCAGGACAATCAGTTTATCGACTTGGTCTACCAAAAGTTGCTTAAAGCACATTCATGATTCCGTGAGAAGTGTGGTGATGTTGTAGATCTTGATACCATGTAAAAGTAGTTTGTACATATTTGTTTCTTCTGCTGGGGATTGGACTTACCTTCTTTTCACCTCACGAAGAGATCGACTACACCTATGACTTGATGTAATATATGAAACTTGGACAATCCTGATGAAAGTCTATGAACAATTGAATATCGACAATGGCAAACCTTTTAAACATTTCTGTAAATTCTATGCACAGTTCTG</genome_strand>
        <mrna_strand>ATTTTGCAAGTCTCATTACCTGTTCAGTCAGCTCCATCACCTCCTCGACAGTCACGTCGCGATTCTGCTAACCTGATCAATAGTACTAATTACCCTGCAAATCTTGTGAAGCCTTCTTTCTTTACACCCCCTGTGTCACCTGTATTGGTGACAACTTCTGTCTCCTCAGCTACATCAACTCCCGTCCTTTATCCTCATGTGAATCCACAACGCCCACATGGTACACTTTTAGTTCAACCCTTCCGAACACCTACTTCGCCTCCATTTTTCACTTTTACTCAGATTCCTCCACAAAGTGTGACACTAAGCAGAGAGAAGGTTCAAGACGTGCTTTTAATGCTTGTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAATCAGTTTATCGACTTGGTCTACCAAAAGTTGCTTAAAGCACATTCATGATTCCGTGAGAAGTGTGGTGATGTTGTAGATCTTGATACCATGTAAAAGTAGTTTGTACATATTTGTTTTTTTTGCTGGGGATTGGACTTACCTTCTTTTCACCTCACGAAGAGATCGACTACACCTATGACTTGATGTAATATATGAAACTTGGACAATCCTGATGAAAGTCTATGAACAATTGAATATCGACAATGGCAAACCTTTTAAACATTTCTGTAAATTCTATGCACAGTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>9</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="524" PGL_stop="4841"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="524" e_stop="589"/>
            <exon e_start="1131" e_stop="1279"/>
            <exon e_start="1367" e_stop="1423"/>
            <exon e_start="1661" e_stop="1699"/>
            <exon e_start="1790" e_stop="1967"/>
            <exon e_start="4459" e_stop="4841"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.925" acc_prob="0.910" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.719" e_score="1.000"/>
          <exon-intron don_prob="0.816" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.744" e_score="0.994"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="524" e_stop="589" e_length="66"/>
          </exon>
          <intron i_serial="1" don_prob="0.925" acc_prob="0.910">
            <gDNA_intron_boundary i_start="590" i_stop="1130" i_length="541"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="1131" e_stop="1279" e_length="149"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.990">
            <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="1367" e_stop="1423" e_length="57"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.719">
            <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="1661" e_stop="1699" e_length="39"/>
          </exon>
          <intron i_serial="4" don_prob="0.816" acc_prob="0.999">
            <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90"/>
          </intron>
          <exon e_serial="5" e_score="0.994">
            <gDNA_exon_boundary e_start="1790" e_stop="1967" e_length="178"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="0.744">
            <gDNA_intron_boundary i_start="1968" i_stop="4458" i_length="2491"/>
          </intron>
          <exon e_serial="6" e_score="0.990">
            <gDNA_exon_boundary e_start="4459" e_stop="4841" e_length="383"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="524" stop="589"/>
              <exon start="1131" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="1967"/>
              <exon start="4459" stop="4841"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U312968" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAG : AAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAG : TTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGA : AATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGG : GTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAG : TCACTCAATGCGTGGCTTTTGAATTCACCAAATTTTTACAAGCTGTGTGGGAGAAAAAGACTCAACCTTGATGGATTCAAAATGGCCATTATTTCACCAATGCTGGAACGAAGTCAAGTATTTAGAGGTTTCAATCCCTTTTTGGTTATATAAATAGGTCAAGTGGGAAACAACAATAAGATATTATTCAGGTGCTTTTGACCAGACTAATAAGGTCGTTGTGGCAAAGTACTACTGTATCAGATGTAATGGATTAGCATCTCAAAACACTTCTATGGAAAGGAGACAAATAATAGATGCACATTCATTATATTATTAAGGGAAAAGGGTCAGATATACCCTCAATTTTATCAGTTAGAGCTGATATATCCCTTATTATGAAA</gDNA_template>
            <first_frame> E  C  R  K  V  A  K  D  G  R  F  G  *  N  R  W  K  G  Y  H  E  K  :  K  E  E  S  R  T  Q  N  N  Y  N  *  *  Q  K  T  T  E  H  L  E  K  N  R  C  Q  C  H  S  C  H  *  R  S  Q  H  F  Q  R  G  C  C  Y  P  I  Q  *  P  Q  S :   S  S  I  N  C  C  K  H  M  G  S  Q  W  Y  P  P  D  K  E :   I  A  G  Y  S  S  S  N  Y  S  P  A  G :   S  *  *  F  G  E  L  E  E  V  G  *  A  V  P  E  A  G  T  W  C  C  R  C  G  C  R  C  C  C  S  T  G  R  *  *  *  C  T  R  T  C  G  W  *  N  F  *  S  C  G  *  G  G  P  Y  F  L  K  :  S  L  N  A  W  L  L  N  S  P  N  F  Y  K  L  C  G  R  K  R  L  N  L  D  G  F  K  M  A  I  I  S  P  M  L  E  R  S  Q  V  F  R  G  F  N  P  F  L  V  I  *  I  G  Q  V  G  N  N  N  K  I  L  F  R  C  F  *  P  D  *  *  G  R  C  G  K  V  L  L  Y  Q  M  *  W  I  S  I  S  K  H  F  Y  G  K  E  T  N  N  R  C  T  F  I  I  L  L  R  E  K  G  Q  I  Y  P  Q  F  Y  Q  L  E  L  I  Y  P  L  L  *   </first_frame>
            <second_frame>  N  V  E  K  L  Q  K  M  A  G  S  V  R  T  G  G  K  G  T  M  R  R :   K  K  K  A  V  H  K  T  T  T  T  D  D  K  R  L  Q  S  T  L  K  R  I  G  V  N  A  I  P  A  I  E  E  V  N  I  F  K  E  D  V  V  I  Q  F  S  N  P  K   : V  Q  A  S  I  A  A  N  T  W  V  V  S  G  T  P  Q  T  K   : K  L  Q  D  I  L  P  Q  I  I  H  Q  L   : G  P  D  N  L  E  N  L  K  K  L  A  E  Q  F  Q  K  Q  A  P  G  A  A  D  V  A  A  G  A  V  A  A  Q  E  D  D  D  D  V  P  E  L  V  A  G  E  T  F  E  A  A  A  E  E  G  H  T  S  *  S :   H  S  M  R  G  F  *  I  H  Q  I  F  T  S  C  V  G  E  K  D  S  T  L  M  D  S  K  W  P  L  F  H  Q  C  W  N  E  V  K  Y  L  E  V  S  I  P  F  W  L  Y  K  *  V  K  W  E  T  T  I  R  Y  Y  S  G  A  F  D  Q  T  N  K  V  V  V  A  K  Y  Y  C  I  R  C  N  G  L  A  S  Q  N  T  S  M  E  R  R  Q  I  I  D  A  H  S  L  Y  Y  *  G  K  R  V  R  Y  T  L  N  F  I  S  *  S  *  Y  I  P  Y  Y  E  </second_frame>
            <third_frame>   M  *  K  S  C  K  R  W  P  V  R  L  E  P  V  E  R  V  P  *  E   : E  R  R  K  P  Y  T  K  Q  L  Q  L  M  T  K  D  Y  R  A  P  *  K  E  *  V  S  M  P  F  L  P  L  K  K  S  T  F  S  K  R  M  L  L  S  N  S  V  T  P  K  :  F  K  H  Q  L  L  Q  T  H  G  *  S  V  V  P  P  R  Q  R  :  N  C  R  I  F  F  L  K  L  F  T  S  W  :  V  L  I  I  W  R  T  *  R  S  W  L  S  S  S  R  S  R  H  L  V  L  Q  M  W  L  Q  V  L  L  Q  H  R  K  M  M  M  M  Y  Q  N  L  W  L  V  K  L  L  K  L  R  L  R  R  A  I  L  P  E   : V  T  Q  C  V  A  F  E  F  T  K  F  L  Q  A  V  W  E  K  K  T  Q  P  *  W  I  Q  N  G  H  Y  F  T  N  A  G  T  K  S  S  I  *  R  F  Q  S  L  F  G  Y  I  N  R  S  S  G  K  Q  Q  *  D  I  I  Q  V  L  L  T  R  L  I  R  S  L  W  Q  S  T  T  V  S  D  V  M  D  *  H  L  K  T  L  L  W  K  G  D  K  *  *  M  H  I  H  Y  I  I  K  G  K  G  S  D  I  P  S  I  L  S  V  R  A  D  I  S  L  I  M  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0191P09.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="525" stop="589"/>
                    <exon start="1131" stop="1279"/>
                    <exon start="1367" stop="1423"/>
                    <exon start="1661" stop="1699"/>
                    <exon start="1790" stop="1965"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>483</number_coding_nucleotides>
                  <number_encoded_amino_acids>161</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NVEKLQKMAGSVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKEDVVIQFSNPKVQASIAANTWVVSGTPQTKKLQDILPQIIHQLGPDNLENLKKLAEQFQKQAPGAADVAAGAVAAQEDDDDVPELVAGETFEAAAEEGHTS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="2992" e_stop="3684"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="2992" e_stop="3684" e_length="693"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2992" stop="3684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U330565" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGAAAAAAAAGTATTTTGTACTAGTTACAACTCCACAGTAGAAAATAAGTTGTTGCAATGACCTACTTGCATCCAATAGGCTCATGTGGTACTTAGAGATCACATAACATTCAAAATTCTGAATACTGTTAGAACTCATGTAGCCACATTTTTAGTTAGTATCAATTAGCATAACTGAAACTGGTCTATTATTATACAGGGTTACAGTTCTGTACATTATATTTTGTTGCAAAGTCCACTGCTGCCATCTTCTGGCTTTCCAGCTAAAACTAGAAATTCATCCTTGTGATCGATTCTCACATGCTTCCACTGTTTGCTTCACTCTCAACTATCAGTACTACTGTGACTAGCAACGTTGTCATCATAGTGATCGCCAGATGGTCAATCTTGTTCAGGGCATAACGACTCCTTACCCCGATTAATAGATAATTCTTGGAGGGGTGGACTACTGATTTTATGGATAGTCAAAGTAGATTACTCAACCTCTGAGTTACTATATCATTTGTTGCTTCTACTGTTTCCTTCTTACACTTGCAAAATATGCAAAATCAGCCTTCATCATACGGTGGTACTGCTAATTATCAGCTCTCTAGGTATAAGTTTTCATAAGTAGAATGATCCTGCAGACATAGCTAAACAGAAGTTGTAAAGTTGTGCTCTGATACATAAGGATTGGAATAGAGGATTGACAAA</gDNA_template>
            <first_frame> *  K  K  S  I  L  Y  *  L  Q  L  H  S  R  K  *  V  V  A  M  T  Y  L  H  P  I  G  S  C  G  T  *  R  S  H  N  I  Q  N  S  E  Y  C  *  N  S  C  S  H  I  F  S  *  Y  Q  L  A  *  L  K  L  V  Y  Y  Y  T  G  L  Q  F  C  T  L  Y  F  V  A  K  S  T  A  A  I  F  W  L  S  S  *  N  *  K  F  I  L  V  I  D  S  H  M  L  P  L  F  A  S  L  S  T  I  S  T  T  V  T  S  N  V  V  I  I  V  I  A  R  W  S  I  L  F  R  A  *  R  L  L  T  P  I  N  R  *  F  L  E  G  W  T  T  D  F  M  D  S  Q  S  R  L  L  N  L  *  V  T  I  S  F  V  A  S  T  V  S  F  L  H  L  Q  N  M  Q  N  Q  P  S  S  Y  G  G  T  A  N  Y  Q  L  S  R  Y  K  F  S  *  V  E  *  S  C  R  H  S  *  T  E  V  V  K  L  C  S  D  T  *  G  L  E  *  R  I  D  K </first_frame>
            <second_frame>  E  K  K  V  F  C  T  S  Y  N  S  T  V  E  N  K  L  L  Q  *  P  T  C  I  Q  *  A  H  V  V  L  R  D  H  I  T  F  K  I  L  N  T  V  R  T  H  V  A  T  F  L  V  S  I  N  *  H  N  *  N  W  S  I  I  I  Q  G  Y  S  S  V  H  Y  I  L  L  Q  S  P  L  L  P  S  S  G  F  P  A  K  T  R  N  S  S  L  *  S  I  L  T  C  F  H  C  L  L  H  S  Q  L  S  V  L  L  *  L  A  T  L  S  S  *  *  S  P  D  G  Q  S  C  S  G  H  N  D  S  L  P  R  L  I  D  N  S  W  R  G  G  L  L  I  L  W  I  V  K  V  D  Y  S  T  S  E  L  L  Y  H  L  L  L  L  L  F  P  S  Y  T  C  K  I  C  K  I  S  L  H  H  T  V  V  L  L  I  I  S  S  L  G  I  S  F  H  K  *  N  D  P  A  D  I  A  K  Q  K  L  *  S  C  A  L  I  H  K  D  W  N  R  G  L  T   </second_frame>
            <third_frame>   K  K  K  Y  F  V  L  V  T  T  P  Q  *  K  I  S  C  C  N  D  L  L  A  S  N  R  L  M  W  Y  L  E  I  T  *  H  S  K  F  *  I  L  L  E  L  M  *  P  H  F  *  L  V  S  I  S  I  T  E  T  G  L  L  L  Y  R  V  T  V  L  Y  I  I  F  C  C  K  V  H  C  C  H  L  L  A  F  Q  L  K  L  E  I  H  P  C  D  R  F  S  H  A  S  T  V  C  F  T  L  N  Y  Q  Y  Y  C  D  *  Q  R  C  H  H  S  D  R  Q  M  V  N  L  V  Q  G  I  T  T  P  Y  P  D  *  *  I  I  L  G  G  V  D  Y  *  F  Y  G  *  S  K  *  I  T  Q  P  L  S  Y  Y  I  I  C  C  F  Y  C  F  L  L  T  L  A  K  Y  A  K  S  A  F  I  I  R  W  Y  C  *  L  S  A  L  *  V  *  V  F  I  S  R  M  I  L  Q  T  *  L  N  R  S  C  K  V  V  L  *  Y  I  R  I  G  I  E  D  *  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0191P09.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3362" stop="3604"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SPDGQSCSGHNDSLPRLIDNSWRGGLLILWIVKVDYSTSELLYHLLLLLFPSYTCKICKISLHHTVVLLIISSLGISFHK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0191P09.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3147" stop="3341"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVSISITETGLLLYRVTVLYIIFCCKVHCCHLLAFQLKLEIHPCDRFSHASTVCFTLNYQYYCD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="5092" PGL_stop="5529"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5092" e_stop="5529"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.932"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.932">
            <gDNA_exon_boundary e_start="5092" e_stop="5529" e_length="438"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5092" stop="5529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344226" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTATTGTAGATGACCAAATTTTTTCTTCGAATACGAAATTAAATTACAAAACACACAAAAAAATAGTTTAATTTTTTATTCTTTAAGCTAAGGAATGAAAGAAAAAACAAAATAAGAATAAGAAATTCAAATAATTATAATAAAAGAAGTCAAAAAATAATTTATGTATGAAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATACCCCTAAATATTTTTTTTAAAAAAAATTAGAAGTAATAAATATAAATTTAAAACTAATTTTTTAAAATCCGTTAAATGAAGGGTATATGTGAGCCATTTTGTAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGATAAAGGCATATATAAACCACTTTTATAACGAGAGGTATATCAGCTCCAAATGACAAAATTGAGAGGTATATCAGACCCTTTTCC</gDNA_template>
            <first_frame> L  L  *  M  T  K  F  F  L  R  I  R  N  *  I  T  K  H  T  K  K  *  F  N  F  L  F  F  K  L  R  N  E  R  K  N  K  I  R  I  R  N  S  N  N  Y  N  K  R  S  Q  K  I  I  Y  V  *  K  N  *  N  I  P  *  T  L  I  E  E  S  Y  I  P  L  N  I  F  F  K  K  N  *  K  *  *  I  *  I  *  N  *  F  F  K  I  R  *  M  K  G  I  C  E  P  F  C  N  G  R  G  I  C  E  P  F  V  *  R  *  R  H  I  *  T  T  F  I  T  R  G  I  S  A  P  N  D  K  I  E  R  Y  I  R  P  F  S </first_frame>
            <second_frame>  Y  C  R  *  P  N  F  F  F  E  Y  E  I  K  L  Q  N  T  Q  K  N  S  L  I  F  Y  S  L  S  *  G  M  K  E  K  T  K  *  E  *  E  I  Q  I  I  I  I  K  E  V  K  K  *  F  M  Y  E  K  I  K  I  Y  L  E  L  *  *  K  N  H  I  Y  P  *  I  F  F  L  K  K  I  R  S  N  K  Y  K  F  K  T  N  F  L  K  S  V  K  *  R  V  Y  V  S  H  F  V  T  A  G  V  Y  V  S  R  L  Y  N  D  K  G  I  Y  K  P  L  L  *  R  E  V  Y  Q  L  Q  M  T  K  L  R  G  I  S  D  P  F   </second_frame>
            <third_frame>   I  V  D  D  Q  I  F  S  S  N  T  K  L  N  Y  K  T  H  K  K  I  V  *  F  F  I  L  *  A  K  E  *  K  K  K  Q  N  K  N  K  K  F  K  *  L  *  *  K  K  S  K  N  N  L  C  M  K  K  L  K  Y  T  L  N  F  D  R  R  I  I  Y  T  P  K  Y  F  F  *  K  K  L  E  V  I  N  I  N  L  K  L  I  F  *  N  P  L  N  E  G  Y  M  *  A  I  L  *  R  Q  G  Y  M  *  A  V  C  I  T  I  K  A  Y  I  N  H  F  Y  N  E  R  Y  I  S  S  K  *  Q  N  *  E  V  Y  Q  T  L  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0191P09.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="17186" PGL_stop="18606"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17186" e_stop="17683"/>
            <exon e_start="17760" e_stop="17868"/>
            <exon e_start="18243" e_stop="18606"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.831" e_score="1.000"/>
          <exon-intron don_prob="0.890" acc_prob="0.955" e_score="0.945"/>
          <exon-only e_score="0.857"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="17186" e_stop="17683" e_length="498"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.831">
            <gDNA_intron_boundary i_start="17684" i_stop="17759" i_length="76"/>
          </intron>
          <exon e_serial="2" e_score="0.945">
            <gDNA_exon_boundary e_start="17760" e_stop="17868" e_length="109"/>
          </exon>
          <intron i_serial="2" don_prob="0.890" acc_prob="0.955">
            <gDNA_intron_boundary i_start="17869" i_stop="18242" i_length="374"/>
          </intron>
          <exon e_serial="3" e_score="0.857">
            <gDNA_exon_boundary e_start="18243" e_stop="18606" e_length="364"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17186" stop="17683"/>
              <exon start="17760" stop="17868"/>
              <exon start="18243" stop="18606"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326021" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGGAAATCATCCTAAAGTTCACATTTGGAACGGTCAAGGTACAGCTGATGCAATGTTTGTATTCCTGTCCCTCGCAGAAGAGAAATGTCTCTTCAATGAGAAAATAAACAGCAAAAAGAAACAAGTAACAGAAGTTTGAGCTTTTTGATGAGCTAAACAAAAGGGTGTTCTGATGTCAAATTTAATTGTTACTCAGCAGATCTTGTATAGAGATTCAACAAAGAAATGGGTAGTATAGTTTGCTATTAAGGAAAGGATAATCAGAGAGATACTTTAATCTTTTTCCCTCGAAGAGGAGATATTGCTGATACTTCAATTTTCGCCTAATTCTCATAATTATTTGTATTTCCTTCTGATGCCACTGACGTAATGTATACGAGCCTTTTACATTAATACCTTTCAGGTCCAAATCCACATATGGGACATTTGGCTTTTGCAGATGCTTTTGTTATTACTGCTGACTCAGTTAGTATGTTAAGCGAGGCTTGCAGTACGGG : GAAACCTGTTTATGTAATTGGTGCTGAGCGATGTACGTGGAAATTCAGAGACTTCCATCAATCCTTGAAAAATCGAGGAGTGGTTCGTCCATTCCTTGGAAAAGAAGAT : ATATCTGAAAGTTGGAGCTATAGTCCCCTGAATGATACTAAGGAGGCTGCTGCGCATGTGATTACCGCACTAGCCGAACGAGGATGGCGATTGCCATCATAATTTCTACTCTACTAAAGTAGTAGTAGTAAATTGATCCAGGTATGTCGAGGGTCTACTGGAAACAACCTCACAAAGGTAAGGGTACGGTCGGTGTAAGTGTACTTTATTTTATTAAAATGCCTGATCACAAGCAGCTCTTGTATCCTCCCATCAAATTGATTGAAGTTTTGTACAATAACAAATATTTGCTATGAAGTGGAGATTCATTTTATGTCATCAGAATAATATAGCTATAAATACAAACTACGAATTTAGGATTGTG</gDNA_template>
            <first_frame> L  E  I  I  L  K  F  T  F  G  T  V  K  V  Q  L  M  Q  C  L  Y  S  C  P  S  Q  K  R  N  V  S  S  M  R  K  *  T  A  K  R  N  K  *  Q  K  F  E  L  F  D  E  L  N  K  R  V  F  *  C  Q  I  *  L  L  L  S  R  S  C  I  E  I  Q  Q  R  N  G  *  Y  S  L  L  L  R  K  G  *  S  E  R  Y  F  N  L  F  P  S  K  R  R  Y  C  *  Y  F  N  F  R  L  I  L  I  I  I  C  I  S  F  *  C  H  *  R  N  V  Y  E  P  F  T  L  I  P  F  R  S  K  S  T  Y  G  T  F  G  F  C  R  C  F  C  Y  Y  C  *  L  S  *  Y  V  K  R  G  L  Q  Y  G  :  E  T  C  L  C  N  W  C  *  A  M  Y  V  E  I  Q  R  L  P  S  I  L  E  K  S  R  S  G  S  S  I  P  W  K  R  R   : Y  I  *  K  L  E  L  *  S  P  E  *  Y  *  G  G  C  C  A  C  D  Y  R  T  S  R  T  R  M  A  I  A  I  I  I  S  T  L  L  K  *  *  *  *  I  D  P  G  M  S  R  V  Y  W  K  Q  P  H  K  G  K  G  T  V  G  V  S  V  L  Y  F  I  K  M  P  D  H  K  Q  L  L  Y  P  P  I  K  L  I  E  V  L  Y  N  N  K  Y  L  L  *  S  G  D  S  F  Y  V  I  R  I  I  *  L  *  I  Q  T  T  N  L  G  L   </first_frame>
            <second_frame>  W  K  S  S  *  S  S  H  L  E  R  S  R  Y  S  *  C  N  V  C  I  P  V  P  R  R  R  E  M  S  L  Q  *  E  N  K  Q  Q  K  E  T  S  N  R  S  L  S  F  L  M  S  *  T  K  G  C  S  D  V  K  F  N  C  Y  S  A  D  L  V  *  R  F  N  K  E  M  G  S  I  V  C  Y  *  G  K  D  N  Q  R  D  T  L  I  F  F  P  R  R  G  D  I  A  D  T  S  I  F  A  *  F  S  *  L  F  V  F  P  S  D  A  T  D  V  M  Y  T  S  L  L  H  *  Y  L  S  G  P  N  P  H  M  G  H  L  A  F  A  D  A  F  V  I  T  A  D  S  V  S  M  L  S  E  A  C  S  T  G :   K  P  V  Y  V  I  G  A  E  R  C  T  W  K  F  R  D  F  H  Q  S  L  K  N  R  G  V  V  R  P  F  L  G  K  E  D  :  I  S  E  S  W  S  Y  S  P  L  N  D  T  K  E  A  A  A  H  V  I  T  A  L  A  E  R  G  W  R  L  P  S  *  F  L  L  Y  *  S  S  S  S  K  L  I  Q  V  C  R  G  S  T  G  N  N  L  T  K  V  R  V  R  S  V  *  V  Y  F  I  L  L  K  C  L  I  T  S  S  S  C  I  L  P  S  N  *  L  K  F  C  T  I  T  N  I  C  Y  E  V  E  I  H  F  M  S  S  E  *  Y  S  Y  K  Y  K  L  R  I  *  D  C  </second_frame>
            <third_frame>   G  N  H  P  K  V  H  I  W  N  G  Q  G  T  A  D  A  M  F  V  F  L  S  L  A  E  E  K  C  L  F  N  E  K  I  N  S  K  K  K  Q  V  T  E  V  *  A  F  *  *  A  K  Q  K  G  V  L  M  S  N  L  I  V  T  Q  Q  I  L  Y  R  D  S  T  K  K  W  V  V  *  F  A  I  K  E  R  I  I  R  E  I  L  *  S  F  S  L  E  E  E  I  L  L  I  L  Q  F  S  P  N  S  H  N  Y  L  Y  F  L  L  M  P  L  T  *  C  I  R  A  F  Y  I  N  T  F  Q  V  Q  I  H  I  W  D  I  W  L  L  Q  M  L  L  L  L  L  L  T  Q  L  V  C  *  A  R  L  A  V  R   : G  N  L  F  M  *  L  V  L  S  D  V  R  G  N  S  E  T  S  I  N  P  *  K  I  E  E  W  F  V  H  S  L  E  K  K  I :   Y  L  K  V  G  A  I  V  P  *  M  I  L  R  R  L  L  R  M  *  L  P  H  *  P  N  E  D  G  D  C  H  H  N  F  Y  S  T  K  V  V  V  V  N  *  S  R  Y  V  E  G  L  L  E  T  T  S  Q  R  *  G  Y  G  R  C  K  C  T  L  F  Y  *  N  A  *  S  Q  A  A  L  V  S  S  H  Q  I  D  *  S  F  V  Q  *  Q  I  F  A  M  K  W  R  F  I  L  C  H  Q  N  N  I  A  I  N  T  N  Y  E  F  R  I  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0191P09.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17580" stop="17683"/>
                    <exon start="17760" stop="17868"/>
                    <exon start="18243" stop="18344"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>312</number_coding_nucleotides>
                  <number_encoded_amino_acids>104</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YLSGPNPHMGHLAFADAFVITADSVSMLSEACSTGKPVYVIGAERCTWKFRDFHQSLKNRGVVRPFLGKEDISESWSYSPLNDTKEAAAHVITALAERGWRLPS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="17186" e_stop="17868"/>
            <exon e_start="18243" e_stop="18380"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.890" acc_prob="0.955" e_score="0.999"/>
          <exon-only e_score="0.949"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="17186" e_stop="17868" e_length="683"/>
          </exon>
          <intron i_serial="1" don_prob="0.890" acc_prob="0.955">
            <gDNA_intron_boundary i_start="17869" i_stop="18242" i_length="374"/>
          </intron>
          <exon e_serial="2" e_score="0.949">
            <gDNA_exon_boundary e_start="18243" e_stop="18380" e_length="138"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17186" stop="17868"/>
              <exon start="18243" stop="18380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U338295" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGGAAATCATCCTAAAGTTCACATTTGGAACGGTCAAGGTACAGCTGATGCAATGTTTGTATTCCTGTCCCTCGCAGAAGAGAAATGTCTCTTCAATGAGAAAATAAACAGCAAAAAGAAACAAGTAACAGAAGTTTGAGCTTTTTGATGAGCTAAACAAAAGGGTGTTCTGATGTCAAATTTAATTGTTACTCAGCAGATCTTGTATAGAGATTCAACAAAGAAATGGGTAGTATAGTTTGCTATTAAGGAAAGGATAATCAGAGAGATACTTTAATCTTTTTCCCTCGAAGAGGAGATATTGCTGATACTTCAATTTTCGCCTAATTCTCATAATTATTTGTATTTCCTTCTGATGCCACTGACGTAATGTATACGAGCCTTTTACATTAATACCTTTCAGGTCCAAATCCACATATGGGACATTTGGCTTTTGCAGATGCTTTTGTTATTACTGCTGACTCAGTTAGTATGTTAAGCGAGGCTTGCAGTACGGGGTAAGTTGGCCTTTATGCTGACTCTTTTCAATTCGATGTCCCTTTTCTGTTATCCTTTTCATTAGCATTTCATCAGGAAACCTGTTTATGTAATTGGTGCTGAGCGATGTACGTGGAAATTCAGAGACTTCCATCAATCCTTGAAAAATCGAGGAGTGGTTCGTCCATTCCTTGGAAAAGAAGAT : ATATCTGAAAGTTGGAGCTATAGTCCCCTGAATGATACTAAGGAGGCTGCTGCGCATGTGATTACCGCACTAGCCGAACGAGGATGGCGATTGCCATCATAATTTCTACTCTACTAAAGTAGTAGTAGTAAATTGATC</gDNA_template>
            <first_frame> L  E  I  I  L  K  F  T  F  G  T  V  K  V  Q  L  M  Q  C  L  Y  S  C  P  S  Q  K  R  N  V  S  S  M  R  K  *  T  A  K  R  N  K  *  Q  K  F  E  L  F  D  E  L  N  K  R  V  F  *  C  Q  I  *  L  L  L  S  R  S  C  I  E  I  Q  Q  R  N  G  *  Y  S  L  L  L  R  K  G  *  S  E  R  Y  F  N  L  F  P  S  K  R  R  Y  C  *  Y  F  N  F  R  L  I  L  I  I  I  C  I  S  F  *  C  H  *  R  N  V  Y  E  P  F  T  L  I  P  F  R  S  K  S  T  Y  G  T  F  G  F  C  R  C  F  C  Y  Y  C  *  L  S  *  Y  V  K  R  G  L  Q  Y  G  V  S  W  P  L  C  *  L  F  S  I  R  C  P  F  S  V  I  L  F  I  S  I  S  S  G  N  L  F  M  *  L  V  L  S  D  V  R  G  N  S  E  T  S  I  N  P  *  K  I  E  E  W  F  V  H  S  L  E  K  K  I :   Y  L  K  V  G  A  I  V  P  *  M  I  L  R  R  L  L  R  M  *  L  P  H  *  P  N  E  D  G  D  C  H  H  N  F  Y  S  T  K  V  V  V  V  N  *   </first_frame>
            <second_frame>  W  K  S  S  *  S  S  H  L  E  R  S  R  Y  S  *  C  N  V  C  I  P  V  P  R  R  R  E  M  S  L  Q  *  E  N  K  Q  Q  K  E  T  S  N  R  S  L  S  F  L  M  S  *  T  K  G  C  S  D  V  K  F  N  C  Y  S  A  D  L  V  *  R  F  N  K  E  M  G  S  I  V  C  Y  *  G  K  D  N  Q  R  D  T  L  I  F  F  P  R  R  G  D  I  A  D  T  S  I  F  A  *  F  S  *  L  F  V  F  P  S  D  A  T  D  V  M  Y  T  S  L  L  H  *  Y  L  S  G  P  N  P  H  M  G  H  L  A  F  A  D  A  F  V  I  T  A  D  S  V  S  M  L  S  E  A  C  S  T  G  *  V  G  L  Y  A  D  S  F  Q  F  D  V  P  F  L  L  S  F  S  L  A  F  H  Q  E  T  C  L  C  N  W  C  *  A  M  Y  V  E  I  Q  R  L  P  S  I  L  E  K  S  R  S  G  S  S  I  P  W  K  R  R   : Y  I  *  K  L  E  L  *  S  P  E  *  Y  *  G  G  C  C  A  C  D  Y  R  T  S  R  T  R  M  A  I  A  I  I  I  S  T  L  L  K  *  *  *  *  I  D  </second_frame>
            <third_frame>   G  N  H  P  K  V  H  I  W  N  G  Q  G  T  A  D  A  M  F  V  F  L  S  L  A  E  E  K  C  L  F  N  E  K  I  N  S  K  K  K  Q  V  T  E  V  *  A  F  *  *  A  K  Q  K  G  V  L  M  S  N  L  I  V  T  Q  Q  I  L  Y  R  D  S  T  K  K  W  V  V  *  F  A  I  K  E  R  I  I  R  E  I  L  *  S  F  S  L  E  E  E  I  L  L  I  L  Q  F  S  P  N  S  H  N  Y  L  Y  F  L  L  M  P  L  T  *  C  I  R  A  F  Y  I  N  T  F  Q  V  Q  I  H  I  W  D  I  W  L  L  Q  M  L  L  L  L  L  L  T  Q  L  V  C  *  A  R  L  A  V  R  G  K  L  A  F  M  L  T  L  F  N  S  M  S  L  F  C  Y  P  F  H  *  H  F  I  R  K  P  V  Y  V  I  G  A  E  R  C  T  W  K  F  R  D  F  H  Q  S  L  K  N  R  G  V  V  R  P  F  L  G  K  E  D  :  I  S  E  S  W  S  Y  S  P  L  N  D  T  K  E  A  A  A  H  V  I  T  A  L  A  E  R  G  W  R  L  P  S  *  F  L  L  Y  *  S  S  S  S  K  L  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0191P09.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17749" stop="17868"/>
                    <exon start="18243" stop="18344"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HFIRKPVYVIGAERCTWKFRDFHQSLKNRGVVRPFLGKEDISESWSYSPLNDTKEAAAHVITALAERGWRLPS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="25148" PGL_stop="24697"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25148" e_stop="24697"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="25148" e_stop="24697" e_length="452"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25148" stop="24697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U342381" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATAATAAAACATTGTTTGTGAGCTTGGTAGGATCGTACTTGAAAACATGTGTTGCACCGGGGCTAGGGAACAAGATATATTTTTCAATGTTTCACAATGAAAATGGTGTTTTCTATTGTTTAGTCAATCGCAAATATTACTCTTCTGATTATTTGGGCATCAAAACTTATTCAAGTCCAAATATTTTCAACTTCATTCGACCAATATCATGCATTTTGGATCGAATCAGAGGATGAGTGATCGTATAGTTCCATTTTTGTTCTTATCGGAGACATTCCCGGAGCCACGGGGATTAATTAGGTATGTTGTTGTTGGCACTGGTGCTAAAAATTACTTTTTATGACATATTACCGTGTAATAGTGCCAATATGTGGAGAAATCCAAAAGATAAAGTGTCATTAGTATATTTTGTGTATCAAATTCTTTTAATTAATAAAGTAGTTTTTATTTA</gDNA_template>
            <first_frame> N  N  K  T  L  F  V  S  L  V  G  S  Y  L  K  T  C  V  A  P  G  L  G  N  K  I  Y  F  S  M  F  H  N  E  N  G  V  F  Y  C  L  V  N  R  K  Y  Y  S  S  D  Y  L  G  I  K  T  Y  S  S  P  N  I  F  N  F  I  R  P  I  S  C  I  L  D  R  I  R  G  *  V  I  V  *  F  H  F  C  S  Y  R  R  H  S  R  S  H  G  D  *  L  G  M  L  L  L  A  L  V  L  K  I  T  F  Y  D  I  L  P  C  N  S  A  N  M  W  R  N  P  K  D  K  V  S  L  V  Y  F  V  Y  Q  I  L  L  I  N  K  V  V  F  I   </first_frame>
            <second_frame>  I  I  K  H  C  L  *  A  W  *  D  R  T  *  K  H  V  L  H  R  G  *  G  T  R  Y  I  F  Q  C  F  T  M  K  M  V  F  S  I  V  *  S  I  A  N  I  T  L  L  I  I  W  A  S  K  L  I  Q  V  Q  I  F  S  T  S  F  D  Q  Y  H  A  F  W  I  E  S  E  D  E  *  S  Y  S  S  I  F  V  L  I  G  D  I  P  G  A  T  G  I  N  *  V  C  C  C  W  H  W  C  *  K  L  L  F  M  T  Y  Y  R  V  I  V  P  I  C  G  E  I  Q  K  I  K  C  H  *  Y  I  L  C  I  K  F  F  *  L  I  K  *  F  L  F  </second_frame>
            <third_frame>   *  *  N  I  V  C  E  L  G  R  I  V  L  E  N  M  C  C  T  G  A  R  E  Q  D  I  F  F  N  V  S  Q  *  K  W  C  F  L  L  F  S  Q  S  Q  I  L  L  F  *  L  F  G  H  Q  N  L  F  K  S  K  Y  F  Q  L  H  S  T  N  I  M  H  F  G  S  N  Q  R  M  S  D  R  I  V  P  F  L  F  L  S  E  T  F  P  E  P  R  G  L  I  R  Y  V  V  V  G  T  G  A  K  N  Y  F  L  *  H  I  T  V  *  *  C  Q  Y  V  E  K  S  K  R  *  S  V  I  S  I  F  C  V  S  N  S  F  N  *  *  S  S  F  Y  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0191P09.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25148" stop="24912"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NNKTLFVSLVGSYLKTCVAPGLGNKIYFSMFHNENGVFYCLVNRKYYSSDYLGIKTYSSPNIFNFIRPISCILDRIRG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0191P09.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24999" stop="24805"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFGHQNLFKSKYFQLHSTNIMHFGSNQRMSDRIVPFLFLSETFPEPRGLIRYVVVGTGAKNYFL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="26021" PGL_stop="25160"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26021" e_stop="25160"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="26021" e_stop="25160" e_length="862"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26021" stop="25160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U340253" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTTTTTTACAATGGAGGCTGCATTGTGGTCAGATGGTATACCATCGGACATACTCGGATTAATATCATCACGTCTTATTGCTGCGGAATATTTTATTTTTCGTGCTGTTTGTAAAAAATGGAGACACACACCCGTTACCCCTCCACATTGTCCTGCTCAATCAGAAAAATCGCCTCGTTTGTTCACATTGCGTGGAGATACTGGAATAGTTGATTTCTTTCATCCCGTGTATAATTTTATGACAACTACGTCTATTCCAATTCCGAAATTAATGAATTCTCGAATTCGAAGTTCAAAAGGTAATTGGTTACTGATGAGTCATGGTGATTGCGATATGTTTTTTTTCAATTTTATTAGCAATGAGATAATTGAACTTCCTAATCTACAAGGGGAGAGTCGATATATCACTTGTTGGATATTTTCATGTCCTCCAAACTCGTCGTCATCTGCTTGCTTTGTTGTTGGTTTGGACTACAGTGGTAATCCTCCAGACGTTTGCATCATCAAAATTGGAGAGACTAATTGGACGTTTCATAACTTAAGTGATCTAGCAGATACATATAAACATTTTGCATTAACGGGATGCAGTAGTCCAATATTTTTTAGAAATAATATTGTTTATGTAGTGGGAGATAAAGGAAATCTGGGTATACTTACCATCAATGAAAACTCAACTCCTAGTTGGGAATTTTATGGTAAACCATTTCGAGGTAGAAGAGTAAAGTCAATCAACTATGTTTTCACGGCAGAAGATGTCGAAAACAAAGGAATATTAGTTGTATTTCTATCTCACCACGAAGGGAAAGTAGAGGTTTGGAGGTACAAAATGAATGGAGAGGTGTTGGAGAGGGAAGAAATAA</gDNA_template>
            <first_frame> F  F  F  T  M  E  A  A  L  W  S  D  G  I  P  S  D  I  L  G  L  I  S  S  R  L  I  A  A  E  Y  F  I  F  R  A  V  C  K  K  W  R  H  T  P  V  T  P  P  H  C  P  A  Q  S  E  K  S  P  R  L  F  T  L  R  G  D  T  G  I  V  D  F  F  H  P  V  Y  N  F  M  T  T  T  S  I  P  I  P  K  L  M  N  S  R  I  R  S  S  K  G  N  W  L  L  M  S  H  G  D  C  D  M  F  F  F  N  F  I  S  N  E  I  I  E  L  P  N  L  Q  G  E  S  R  Y  I  T  C  W  I  F  S  C  P  P  N  S  S  S  S  A  C  F  V  V  G  L  D  Y  S  G  N  P  P  D  V  C  I  I  K  I  G  E  T  N  W  T  F  H  N  L  S  D  L  A  D  T  Y  K  H  F  A  L  T  G  C  S  S  P  I  F  F  R  N  N  I  V  Y  V  V  G  D  K  G  N  L  G  I  L  T  I  N  E  N  S  T  P  S  W  E  F  Y  G  K  P  F  R  G  R  R  V  K  S  I  N  Y  V  F  T  A  E  D  V  E  N  K  G  I  L  V  V  F  L  S  H  H  E  G  K  V  E  V  W  R  Y  K  M  N  G  E  V  L  E  R  E  E  I  </first_frame>
            <second_frame>  F  F  L  Q  W  R  L  H  C  G  Q  M  V  Y  H  R  T  Y  S  D  *  Y  H  H  V  L  L  L  R  N  I  L  F  F  V  L  F  V  K  N  G  D  T  H  P  L  P  L  H  I  V  L  L  N  Q  K  N  R  L  V  C  S  H  C  V  E  I  L  E  *  L  I  S  F  I  P  C  I  I  L  *  Q  L  R  L  F  Q  F  R  N  *  *  I  L  E  F  E  V  Q  K  V  I  G  Y  *  *  V  M  V  I  A  I  C  F  F  S  I  L  L  A  M  R  *  L  N  F  L  I  Y  K  G  R  V  D  I  S  L  V  G  Y  F  H  V  L  Q  T  R  R  H  L  L  A  L  L  L  V  W  T  T  V  V  I  L  Q  T  F  A  S  S  K  L  E  R  L  I  G  R  F  I  T  *  V  I  *  Q  I  H  I  N  I  L  H  *  R  D  A  V  V  Q  Y  F  L  E  I  I  L  F  M  *  W  E  I  K  E  I  W  V  Y  L  P  S  M  K  T  Q  L  L  V  G  N  F  M  V  N  H  F  E  V  E  E  *  S  Q  S  T  M  F  S  R  Q  K  M  S  K  T  K  E  Y  *  L  Y  F  Y  L  T  T  K  G  K  *  R  F  G  G  T  K  *  M  E  R  C  W  R  G  K  K  * </second_frame>
            <third_frame>   F  F  Y  N  G  G  C  I  V  V  R  W  Y  T  I  G  H  T  R  I  N  I  I  T  S  Y  C  C  G  I  F  Y  F  S  C  C  L  *  K  M  E  T  H  T  R  Y  P  S  T  L  S  C  S  I  R  K  I  A  S  F  V  H  I  A  W  R  Y  W  N  S  *  F  L  S  S  R  V  *  F  Y  D  N  Y  V  Y  S  N  S  E  I  N  E  F  S  N  S  K  F  K  R  *  L  V  T  D  E  S  W  *  L  R  Y  V  F  F  Q  F  Y  *  Q  *  D  N  *  T  S  *  S  T  R  G  E  S  I  Y  H  L  L  D  I  F  M  S  S  K  L  V  V  I  C  L  L  C  C  W  F  G  L  Q  W  *  S  S  R  R  L  H  H  Q  N  W  R  D  *  L  D  V  S  *  L  K  *  S  S  R  Y  I  *  T  F  C  I  N  G  M  Q  *  S  N  I  F  *  K  *  Y  C  L  C  S  G  R  *  R  K  S  G  Y  T  Y  H  Q  *  K  L  N  S  *  L  G  I  L  W  *  T  I  S  R  *  K  S  K  V  N  Q  L  C  F  H  G  R  R  C  R  K  Q  R  N  I  S  C  I  S  I  S  P  R  R  E  S  R  G  L  E  V  Q  N  E  W  R  G  V  G  E  G  R  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0191P09.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26021" stop="25161"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>861</number_coding_nucleotides>
                  <number_encoded_amino_acids>287</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFFTMEAALWSDGIPSDILGLISSRLIAAEYFIFRAVCKKWRHTPVTPPHCPAQSEKSPRLFTLRGDTGIVDFFHPVYNFMTTTSIPIPKLMNSRIRSSKGNWLLMSHGDCDMFFFNFISNEIIELPNLQGESRYITCWIFSCPPNSSSSACFVVGLDYSGNPPDVCIIKIGETNWTFHNLSDLADTYKHFALTGCSSPIFFRNNIVYVVGDKGNLGILTINENSTPSWEFYGKPFRGRRVKSINYVFTAEDVENKGILVVFLSHHEGKVEVWRYKMNGEVLEREEI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="31230" PGL_stop="36925"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="31230" e_stop="31512"/>
            <exon e_start="32577" e_stop="32617"/>
            <exon e_start="33962" e_stop="34011"/>
            <exon e_start="34178" e_stop="34322"/>
            <exon e_start="35168" e_stop="35218"/>
            <exon e_start="36807" e_stop="36925"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.980" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.674" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.932" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="31230" e_stop="31512" e_length="283"/>
          </exon>
          <intron i_serial="1" don_prob="0.980" acc_prob="0.991">
            <gDNA_intron_boundary i_start="31513" i_stop="32576" i_length="1064"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="32577" e_stop="32617" e_length="41"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="32618" i_stop="33961" i_length="1344"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="33962" e_stop="34011" e_length="50"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="0.674">
            <gDNA_intron_boundary i_start="34012" i_stop="34177" i_length="166"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="34178" e_stop="34322" e_length="145"/>
          </exon>
          <intron i_serial="4" don_prob="0.969" acc_prob="0.979">
            <gDNA_intron_boundary i_start="34323" i_stop="35167" i_length="845"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="35168" e_stop="35218" e_length="51"/>
          </exon>
          <intron i_serial="5" don_prob="0.932" acc_prob="1.000">
            <gDNA_intron_boundary i_start="35219" i_stop="36806" i_length="1588"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="36807" e_stop="36925" e_length="119"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31230" stop="31512"/>
              <exon start="32577" stop="32617"/>
              <exon start="33962" stop="34011"/>
              <exon start="34178" stop="34322"/>
              <exon start="35168" stop="35218"/>
              <exon start="36807" stop="36925"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326936" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAATACTTTTCCCACTCCACTCTCTACTTCTCCATATTTTCTTCTCCGATCGACAAATCGATTCTCCGGTTCTCTCTATAATCTATCTGCTTCTGTACGATCAATCGGAAAGTTCTAGAAGAAGATGTCGTCGAATTCAAAGTTAATGCCGAATCTGGATGAGCGAAGTACGAAGATGCTAAACCTCACTGTGCTACAGAGAATCGATCCGCGTATTGAGGAGATCCTCATCACAGCTGCTCATGTTACGTTGTACGAGTTCAACGTCGACCTCAATCAATGG : AGCCGCAAGGAGGTTGAAGGTTCTTTCTTTGTAGTTAAGAG : GAGTGCTCAGCCAAGGTTCCAGTTCATTGTTATGAACCGCAGGAGTGCAG : AAAATATGGTGGAAGATCTCTTGGGAGACTTTGAGTTTGAGGTTCAGGTTCCATACTTGTTGTATCGCAATGCAGCCCAAGAAGTCAATGGTATTTGGTTTTACAATGCACATGAAATTGAGGAGGTTGCAGATCTCTTCGGCAG : AATTTTAGGTGAATACTCAAAGGTTCCCCTGAAGCCACAGCTAAGAAAAAG : TGAGTTTGCAGATCATGAGGTGGTCCCAATGAGTACAGCAATAGAAGGGACATCTGGACCAGCATTTACCACCTCTACGGATGGGTTTGGTGCTGATGATTCTTCCTTTATGAACTTTT</gDNA_template>
            <first_frame> K  Y  F  S  H  S  T  L  Y  F  S  I  F  S  S  P  I  D  K  S  I  L  R  F  S  L  *  S  I  C  F  C  T  I  N  R  K  V  L  E  E  D  V  V  E  F  K  V  N  A  E  S  G  *  A  K  Y  E  D  A  K  P  H  C  A  T  E  N  R  S  A  Y  *  G  D  P  H  H  S  C  S  C  Y  V  V  R  V  Q  R  R  P  Q  S  M   : E  P  Q  G  G  *  R  F  F  L  C  S  *  E  :  E  C  S  A  K  V  P  V  H  C  Y  E  P  Q  E  C  R :   K  Y  G  G  R  S  L  G  R  L  *  V  *  G  S  G  S  I  L  V  V  S  Q  C  S  P  R  S  Q  W  Y  L  V  L  Q  C  T  *  N  *  G  G  C  R  S  L  R  Q  :  N  F  R  *  I  L  K  G  S  P  E  A  T  A  K  K  K  :  *  V  C  R  S  *  G  G  P  N  E  Y  S  N  R  R  D  I  W  T  S  I  Y  H  L  Y  G  W  V  W  C  *  *  F  F  L  Y  E  L   </first_frame>
            <second_frame>  N  T  F  P  T  P  L  S  T  S  P  Y  F  L  L  R  S  T  N  R  F  S  G  S  L  Y  N  L  S  A  S  V  R  S  I  G  K  F  *  K  K  M  S  S  N  S  K  L  M  P  N  L  D  E  R  S  T  K  M  L  N  L  T  V  L  Q  R  I  D  P  R  I  E  E  I  L  I  T  A  A  H  V  T  L  Y  E  F  N  V  D  L  N  Q  W  :  S  R  K  E  V  E  G  S  F  F  V  V  K  R :   S  A  Q  P  R  F  Q  F  I  V  M  N  R  R  S  A   : E  N  M  V  E  D  L  L  G  D  F  E  F  E  V  Q  V  P  Y  L  L  Y  R  N  A  A  Q  E  V  N  G  I  W  F  Y  N  A  H  E  I  E  E  V  A  D  L  F  G  R :   I  L  G  E  Y  S  K  V  P  L  K  P  Q  L  R  K  S :   E  F  A  D  H  E  V  V  P  M  S  T  A  I  E  G  T  S  G  P  A  F  T  T  S  T  D  G  F  G  A  D  D  S  S  F  M  N  F  </second_frame>
            <third_frame>   I  L  F  P  L  H  S  L  L  L  H  I  F  F  S  D  R  Q  I  D  S  P  V  L  S  I  I  Y  L  L  L  Y  D  Q  S  E  S  S  R  R  R  C  R  R  I  Q  S  *  C  R  I  W  M  S  E  V  R  R  C  *  T  S  L  C  Y  R  E  S  I  R  V  L  R  R  S  S  S  Q  L  L  M  L  R  C  T  S  S  T  S  T  S  I  N  G :   A  A  R  R  L  K  V  L  S  L  *  L  R   : G  V  L  S  Q  G  S  S  S  L  L  *  T  A  G  V  Q  :  K  I  W  W  K  I  S  W  E  T  L  S  L  R  F  R  F  H  T  C  C  I  A  M  Q  P  K  K  S  M  V  F  G  F  T  M  H  M  K  L  R  R  L  Q  I  S  S  A   : E  F  *  V  N  T  Q  R  F  P  *  S  H  S  *  E  K   : V  S  L  Q  I  M  R  W  S  Q  *  V  Q  Q  *  K  G  H  L  D  Q  H  L  P  P  L  R  M  G  L  V  L  M  I  L  P  L  *  T  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0191P09.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31348" stop="31512"/>
                    <exon start="32577" stop="32617"/>
                    <exon start="33962" stop="34011"/>
                    <exon start="34178" stop="34322"/>
                    <exon start="35168" stop="35218"/>
                    <exon start="36807" stop="36924"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>570</number_coding_nucleotides>
                  <number_encoded_amino_acids>190</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKMSSNSKLMPNLDERSTKMLNLTVLQRIDPRIEEILITAAHVTLYEFNVDLNQWSRKEVEGSFFVVKRSAQPRFQFIVMNRRSAENMVEDLLGDFEFEVQVPYLLYRNAAQEVNGIWFYNAHEIEEVADLFGRILGEYSKVPLKPQLRKSEFADHEVVPMSTAIEGTSGPAFTTSTDGFGADDSSFMNF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="37955" PGL_stop="39584"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37955" e_stop="38302"/>
            <exon e_start="39291" e_stop="39584"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.883" acc_prob="0.999" e_score="0.986"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="37955" e_stop="38302" e_length="348"/>
          </exon>
          <intron i_serial="1" don_prob="0.883" acc_prob="0.999">
            <gDNA_intron_boundary i_start="38303" i_stop="39290" i_length="988"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="39291" e_stop="39584" e_length="294"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37955" stop="38302"/>
              <exon start="39291" stop="39584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U331409" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTTGCAAGTCTCATTACCTGTTCAGTCAGCTCCATCACCTCCTCGACAGTCACGCCGCGATTCTGCTAACCTGATCAATAGTACTAATTACCCTGCAAATCTTGTGAAGCCTTCTTTCTTTACACCCCCTGTGTCACCTGTATTGGTGACAACTTCTGTCTCCTCAGCTACATCAACTCCCGTCCTTTATCCTCATGTGAATCCACAACGCCCACATGGTACACTTCTAGTTCAACCCTTCCGAACACCTACTTCGCCTCCATTTCTCACTTCTACTCAGATTCCTCCACAAAGTGTGACACTAAGCAGAGAGAAGGTTCAAGACGTGCTTCTAATGCTTGTTCAG : GACAATCAGTTTATCGACTTGGTCTACCAAAAGTTGCTTAAAGCACATTCATGATTCCGTGAGAAGTGTGGTGATGTTGTAGATCTTGATACCATGTAAAAGTAGTTTGTACATATTTGTTTCTTCTGCTGGGGATTGGACTTACCTTCTTTTCACCTCACGAAGAGATCGACTACACCTATGACTTGATGTAATATATGAAACTTGGACAATCCTGATGAAAGTCTATGAACAATTGAATATCGACAATGGCAAACCTTTTAAACATTTCTGTAAATTCTATGCACAGTTCTG</gDNA_template>
            <first_frame> I  L  Q  V  S  L  P  V  Q  S  A  P  S  P  P  R  Q  S  R  R  D  S  A  N  L  I  N  S  T  N  Y  P  A  N  L  V  K  P  S  F  F  T  P  P  V  S  P  V  L  V  T  T  S  V  S  S  A  T  S  T  P  V  L  Y  P  H  V  N  P  Q  R  P  H  G  T  L  L  V  Q  P  F  R  T  P  T  S  P  P  F  L  T  S  T  Q  I  P  P  Q  S  V  T  L  S  R  E  K  V  Q  D  V  L  L  M  L  V  Q  :  D  N  Q  F  I  D  L  V  Y  Q  K  L  L  K  A  H  S  *  F  R  E  K  C  G  D  V  V  D  L  D  T  M  *  K  *  F  V  H  I  C  F  F  C  W  G  L  D  L  P  S  F  H  L  T  K  R  S  T  T  P  M  T  *  C  N  I  *  N  L  D  N  P  D  E  S  L  *  T  I  E  Y  R  Q  W  Q  T  F  *  T  F  L  *  I  L  C  T  V  L </first_frame>
            <second_frame>  F  C  K  S  H  Y  L  F  S  Q  L  H  H  L  L  D  S  H  A  A  I  L  L  T  *  S  I  V  L  I  T  L  Q  I  L  *  S  L  L  S  L  H  P  L  C  H  L  Y  W  *  Q  L  L  S  P  Q  L  H  Q  L  P  S  F  I  L  M  *  I  H  N  A  H  M  V  H  F  *  F  N  P  S  E  H  L  L  R  L  H  F  S  L  L  L  R  F  L  H  K  V  *  H  *  A  E  R  R  F  K  T  C  F  *  C  L  F  R :   T  I  S  L  S  T  W  S  T  K  S  C  L  K  H  I  H  D  S  V  R  S  V  V  M  L  *  I  L  I  P  C  K  S  S  L  Y  I  F  V  S  S  A  G  D  W  T  Y  L  L  F  T  S  R  R  D  R  L  H  L  *  L  D  V  I  Y  E  T  W  T  I  L  M  K  V  Y  E  Q  L  N  I  D  N  G  K  P  F  K  H  F  C  K  F  Y  A  Q  F   </second_frame>
            <third_frame>   F  A  S  L  I  T  C  S  V  S  S  I  T  S  S  T  V  T  P  R  F  C  *  P  D  Q  *  Y  *  L  P  C  K  S  C  E  A  F  F  L  Y  T  P  C  V  T  C  I  G  D  N  F  C  L  L  S  Y  I  N  S  R  P  L  S  S  C  E  S  T  T  P  T  W  Y  T  S  S  S  T  L  P  N  T  Y  F  A  S  I  S  H  F  Y  S  D  S  S  T  K  C  D  T  K  Q  R  E  G  S  R  R  A  S  N  A  C  S   : G  Q  S  V  Y  R  L  G  L  P  K  V  A  *  S  T  F  M  I  P  *  E  V  W  *  C  C  R  S  *  Y  H  V  K  V  V  C  T  Y  L  F  L  L  L  G  I  G  L  T  F  F  S  P  H  E  E  I  D  Y  T  Y  D  L  M  *  Y  M  K  L  G  Q  S  *  *  K  S  M  N  N  *  I  S  T  M  A  N  L  L  N  I  S  V  N  S  M  H  S  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0191P09.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37955" stop="38302"/>
                    <exon start="39291" stop="39344"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>399</number_coding_nucleotides>
                  <number_encoded_amino_acids>133</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILQVSLPVQSAPSPPRQSRRDSANLINSTNYPANLVKPSFFTPPVSPVLVTTSVSSATSTPVLYPHVNPQRPHGTLLVQPFRTPTSPPFLTSTQIPPQSVTLSREKVQDVLLMLVQDNQFIDLVYQKLLKAHS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 13 chains have been computed
$ 
$ memory statistics:
$ 16744 bytes spliced alignments in total
$ 9 spliced alignments have been stored
$ 1860 bytes was the average size of a spliced alignment
$ 13208 bytes predicted gene locations in total
$ 7 predicted gene locations have been stored
$ 1886 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 15 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 13:11:45
-->
