<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-02-23 14:44:56"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E231589" ref_strand="+" ref_description="SGN-E231589 [cLED-4-L18]">
      <seq>tcgattctccttctctctctttctgttcttttctttttcttattcaaaccctccttcttttaccctaattagcatataattaagaataaaagatggaataataacccactaatttactcaaggttacctcttttaacccccaggtaattagacttattaacataaacccactaactttataattaaagtaggaatagtccaaaacgtcccttaaaacgtgtaaagaaatccgacccagactgggattacgcaacctgtgatggcccgtcgtgcctgcgacggtccgtcctgcaggtcgtcgcaaggttcatagactcaatttccaccaaagagtctgtgacggtccgtcacgcccgtgacggtccgtcgtgccattccgttacgaagttcagagagtcgatttttagtacccaatttcagaatttctaagtgttttgaaacgagactcctcgacggtccatcgtgctcatgacggtccgtcgtgggttccgtcgtctcaacctgtttttccaaaaataaaatctgctactcaaaacgactaaacaggtcgttacattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="-" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="5240" stop="4082"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4940" g_stop="4381" g_length="560"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="558" r_length="558" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="-" ref_id="SGN-E231589" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231589" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4940" e_stop="4381"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGATTCTCCTTCTCTCTCTTTCTGTTCTTTTTCTTTTTCTTATTCAAACCCTCTTTTTTTTATCCTAATTAGCATATAATTAAGAATAAAAGATGGCAATAATAACCCACTAATTTACTCAAGGTTACTTCTTTTAACCCCCAAGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAAAAATCTGACCCAGACTGGGATTACGCAACCTGTGACGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACGGTCCGTCCTACCATTCCGTTACGAAGTTCAGAGAGTCAATTTTCAGTACCCAATTTTAGAATTTCTAAGTGTTTTGAAACGAGACCCCTCGACGGTCCGTCGTGCTCATGACGGTCCGTCGTGAGTTCCGTCGTCTCAGCCTGTTTTTCCAGAAATAAAATCTACTGCTCAAAACGACTAAACAGGTCGTTACATTA</genome_strand>
        <mrna_strand>TCGATTCTCCTTCTCTCTCTTTCTGTTC-TTTTCTTTTTCTTATTCAAACCCTCCTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGG-AATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAGGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGATGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCATAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACGGTCCGTCGTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTTAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACTCCTCGACGGTCCATCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCTCAACCTGTTTTTCCAAAAATAAAATCTGCTACTCAAAACGACTAAACAGGTCGTTACATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E396058" ref_strand="+" ref_description="SGN-E396058 [TUS-18-N22]">
      <seq>atcgattctccttctctctctttctgttcttttctttttcttattcaaaccctccttcttttaccctaattagcatataattaagaataaaagatggaataataacccactaatttactcaaggttacctcttttaacccccaggtaattagacttattaacataaacccactaactttataattaaagtaggaatagtccaaaacgtcccttaaaacgtgtaaagaaatccgacccagactgggattacgcaacctgtgatggcccgtcgtgcctgcgacggtccgtcctgcaggtcgtcgcaaggttcagagactcaatttccaccaaagagtctgtgacggtccgtcacgcccgtgacggtccgtcgtgccattccgttacgaagttcagagagtcgatttttagtacccaatttcagaatttctaagtgttttgaaacgagactcctcgacggtccatcgtgctcatgacggtccgtcgtgggttccgtcgtctcaacctgtgtttccaaaaataaaatctgctactcacaacgactaaacaggtcgttacatttaggttcttcatagttaactattattattattttacgatttataacactatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="-" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="5241" stop="3901"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4941" g_stop="4393" g_length="549"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="547" r_length="547" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="-" ref_id="SGN-E396058" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="0.900" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E396058" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4941" e_stop="4393"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGATTCTCCTTCTCTCTCTTTCTGTTCTTTTTCTTTTTCTTATTCAAACCCTCTTTTTTTTATCCTAATTAGCATATAATTAAGAATAAAAGATGGCAATAATAACCCACTAATTTACTCAAGGTTACTTCTTTTAACCCCCAAGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAAAAATCTGACCCAGACTGGGATTACGCAACCTGTGACGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACGGTCCGTCCTACCATTCCGTTACGAAGTTCAGAGAGTCAATTTTCAGTACCCAATTTTAGAATTTCTAAGTGTTTTGAAACGAGACCCCTCGACGGTCCGTCGTGCTCATGACGGTCCGTCGTGAGTTCCGTCGTCTCAGCCTGTTTTTCCAGAAATAAAATCTACTGCTCAAAACGACTAAACAG</genome_strand>
        <mrna_strand>ATCGATTCTCCTTCTCTCTCTTTCTGTTC-TTTTCTTTTTCTTATTCAAACCCTCCTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGG-AATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAGGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGATGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACGGTCCGTCGTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTTAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACTCCTCGACGGTCCATCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCTCAACCTGTGTTTCCAAAAATAAAATCTGCTACTCACAACGACTAAACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E241959" ref_strand="+" ref_description="SGN-E241959 [cLED-27-I11]">
      <seq>tcgattctccttctctctctttctgttcttttctttttcttattcaaaccctccttcttttaccctaattagcatataattaagaataaaagatggaataataacccactaatttactcaaggttacctcttttaacccccaggtaattagacttattaacataaacccactaactttataattaaagtaggaatagtccaaaacgtcccttaaaacgtgtaaagaaatccgacccagactgggattacgcaacctgtgatggcccgtcgtgcctgcgacggtccgtcctgcaggtcgtcgcaaggttcagagactcaatttccaccaaagagtctgtgacggtccgtcacgcccgtgacggtccgtcgtgccattccgttacgaagttcagagagtcgatttttagtacccaatttcagaatttctaagtgttttgaaacgagactcctcgacggtccatcgtgctcatgacggtccgtcgtgggttccgtcgtctcaacctgtttttccaaaaataaaatctgctactcaaaacgactaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="-" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="5240" stop="4094"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4940" g_stop="4394" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="545" r_length="545" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="-" ref_id="SGN-E241959" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241959" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4940" e_stop="4394"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGATTCTCCTTCTCTCTCTTTCTGTTCTTTTTCTTTTTCTTATTCAAACCCTCTTTTTTTTATCCTAATTAGCATATAATTAAGAATAAAAGATGGCAATAATAACCCACTAATTTACTCAAGGTTACTTCTTTTAACCCCCAAGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAAAAATCTGACCCAGACTGGGATTACGCAACCTGTGACGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACGGTCCGTCCTACCATTCCGTTACGAAGTTCAGAGAGTCAATTTTCAGTACCCAATTTTAGAATTTCTAAGTGTTTTGAAACGAGACCCCTCGACGGTCCGTCGTGCTCATGACGGTCCGTCGTGAGTTCCGTCGTCTCAGCCTGTTTTTCCAGAAATAAAATCTACTGCTCAAAACGACTAAACA</genome_strand>
        <mrna_strand>TCGATTCTCCTTCTCTCTCTTTCTGTTC-TTTTCTTTTTCTTATTCAAACCCTCCTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGG-AATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAGGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGATGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACGGTCCGTCGTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTTAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACTCCTCGACGGTCCATCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCTCAACCTGTTTTTCCAAAAATAAAATCTGCTACTCAAAACGACTAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E236652" ref_strand="+" ref_description="SGN-E236652 [cLED-13-L8]">
      <seq>tcgattctccttctctctctttctgttcttttctttttcttattcaaaccctccttcttttaccctaattagcatataattaagaataaaagatggaataataacccactaatttactcaaggttacctcttttaacccccaggtaattagacttattaacataaacccactaactttataattaaagtaggaatagtccaaaacgtcccttaaaacgtgtaaagaaatccgacccagactgggattacgcaacctgtgatggcccgtcgtgcctgcgacggtccgtcctgcaggtcgtcgcaaggttcagagactcaatttccaccaaagagtctgtgacggtccgtcacgcccgtgacggtccgtcgtgccattccgttacgaagttcagagagtcgatttttagtacccaatttcagaatttctaagtgttttgaaacgagactcctcgacggtccatcgtgctcatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="-" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="5240" stop="4167"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4940" g_stop="4467" g_length="474"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="472" r_length="472" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="-" ref_id="SGN-E236652" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E236652" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4940" e_stop="4467"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGATTCTCCTTCTCTCTCTTTCTGTTCTTTTTCTTTTTCTTATTCAAACCCTCTTTTTTTTATCCTAATTAGCATATAATTAAGAATAAAAGATGGCAATAATAACCCACTAATTTACTCAAGGTTACTTCTTTTAACCCCCAAGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAAAAATCTGACCCAGACTGGGATTACGCAACCTGTGACGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACGGTCCGTCCTACCATTCCGTTACGAAGTTCAGAGAGTCAATTTTCAGTACCCAATTTTAGAATTTCTAAGTGTTTTGAAACGAGACCCCTCGACGGTCCGTCGTGCTCATGA</genome_strand>
        <mrna_strand>TCGATTCTCCTTCTCTCTCTTTCTGTTC-TTTTCTTTTTCTTATTCAAACCCTCCTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGG-AATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAGGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGATGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACGGTCCGTCGTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTTAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACTCCTCGACGGTCCATCGTGCTCATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E396070" ref_strand="+" ref_description="SGN-E396070 [TUS-18-P18]">
      <seq>atcgattctccttctctctctttctgttcttttctttttcttattcaaaccctccttcttttaccctaattagcatataattaagaataaaagatggaataataacccactaatttactcaaggttacctcttttaacccccaggtaattagacttattaacataaacccactaactttataattaaagtaggaatagtccaaaacgtcccttaaaacgtgtaaagaaatccgacccagactgggattacgcaacctgtgatggcccgtcgtgcctgcgacggtccgtcctgcaggtcgtcgcaaggttcagagactcaatttccaccaaagagtctgtgacggtccgtcacgcccgtgacggtccgtcgtgccattccgttacgaagttcagagagtcgatttttagtaccgggggggggagtttctaattgttttgaaactagactcctcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="-" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="5241" stop="4228"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4941" g_stop="4486" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="454" r_length="454" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="-" ref_id="SGN-E396070" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E396070" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4941" e_stop="4486"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGATTCTCCTTCTCTCTCTTTCTGTTCTTTTTCTTTTTCTTATTCAAACCCTCTTTTTTTTATCCTAATTAGCATATAATTAAGAATAAAAGATGGCAATAATAACCCACTAATTTACTCAAGGTTACTTCTTTTAACCCCCAAGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAAAAATCTGACCCAGACTGGGATTACGCAACCTGTGACGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACGGTCCGTCCTACCATTCCGTTACGAAGTTCAGAGAGTCAATTTTCAGTACCCAATTTTAGAATTTCTAAGTGTTTTGAAACGAGACCCCTCGA</genome_strand>
        <mrna_strand>ATCGATTCTCCTTCTCTCTCTTTCTGTTC-TTTTCTTTTTCTTATTCAAACCCTCCTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGG-AATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAGGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGATGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACGGTCCGTCGTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTTAGTACCGGGGGGGGGAGTTTCTAATTGTTTTGAAACTAGACTCCTCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242359" ref_strand="+" ref_description="SGN-E242359 [cLEE-3-K21]">
      <seq>cctaatctactttgttaataatgatgccttggtataaaagaaggcttgatgaacgaaagtggtgagattaggggatcgggtgccacgttccggtaccaggatagaatatggatcgggtgtcacgttccgacaccaggatagaatatggatcgggtgccacgttccggtaccaggatagaatatggatcgggtgtcacgttccgacaccaggatagaatatggatcgggtgtcacgttctgacaccaggatagaatatggatcgggtgccacgttccggtgccaggatagtatattgaggagtggagtgtcacgtaaggacacgaggggaataaatatgatgaatcttgaaatatgttaatatatgcaatccaatgaactaaattcccaaataagtatgatgaggaggtgtgagtcctcattgatgtgcttggtgatgcaaccaagggttatggtaattgcaaatgctgcatgctaaggatattagttaattttatgatattgcttaatacatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="4888" stop="6274"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5188" g_stop="5228" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.854"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5229" i_stop="5278" i_length="50">
            <donor d_prob="0.995" d_score="0.85"/>
            <acceptor a_prob="0.000" a_score="0.86"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5279" g_stop="5345" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="110" r_length="67" r_score="0.896"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5346" i_stop="5578" i_length="233">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5579" g_stop="5988" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="515" r_length="405" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E242359" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5188" e_stop="5228"/>
          <exon e_start="5279" e_stop="5345"/>
          <exon e_start="5579" e_stop="5988"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAATCT-CTT-GTTAATGATGAGGCCTTGGTATAAAAGAAGGCGTGATGAACTAAAATAATGATATTGATGATGCCTTGGTAAGAAAGAAGGCTTGATGAATTGATAGAAG-GAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGAGGATCGGAGTGTCACATTCCGACACCAGGATAGAATATGGATAGGGTGCCACATTCCGGTACCAGGATAGAATATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGAATATGGATGGAGTGCCACGTTCCGGTACCAGGATAGAATATGAGGATCGGAGTGTCACGTTTCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGTATATTGAGGAGCGGAGTGTCACGTACCGACACGAGAGGAATAAAGATAATGAATCTTGAAAGATGTTAATATATTTAATCTAATGAACCTAATTCCCAAATGAGTATGATGAGGAGGCGTGAGTCCTCATTGATGAGCTTGGTGTTGTAACCAAGGGTTATGGTAATTGTAAATGCTGCATGCTAAGGATATTAGTTGATTTTATGATGTTATCTGATATATACT</genome_strand>
        <mrna_strand>CCTAATCTACTTTGTTAATAATGATGCCTTGGTATAAAAGAAG..................................................GCTTGATGAA-CGAAAGTGGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATG.........................................................................................................................................................................................................................................GATCGG-GTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATAT--GGATCGG-GTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGTCACGTTCTGACACCAGGATAGAATATGGATCGG-GTGCCACGTTCCGGTGCCAGGATAGTATATTGAGGAGTGGAGTGTCACGTAAGGACACGAGGGGAATAAATATGATGAATCTTGAAATATGTTAATATATGCAATCCAATGAACTAAATTCCCAAATAAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGATGCAACCAAGGGTTATGGTAATTGCAAATGCTGCATGCTAAGGATATTAGTTAATTTTATGATATTGCTTAATACATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E209683" ref_strand="+" ref_description="SGN-E209683 [cLEC-54-L6]">
      <seq>taatgaactaaattcccaaatgagtatgatgaggaggtgtgagtcctcattgatgtgcttggtgttgtaaccaagggttatggtaactataaatgctgcatgttaaggatattagttgattttatgatattgcttaatacatactgttccctattttgagttggccgatgatatctactcagtacccgtggtttgtactgacccctacttttatgtttatcttcttgttatttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="5544" stop="6379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5844" g_stop="6079" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E209683" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>236</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5844" e_stop="6079"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGAACCTAATTCCCAAATGAGTATGATGAGGAGGCGTGAGTCCTCATTGATGAGCTTGGTGTTGTAACCAAGGGTTATGGTAATTGTAAATGCTGCATGCTAAGGATATTAGTTGATTTTATGATGTTATCTGATATATACTGTTTTCTATTTTGAGTTGGCCGATGATACCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTT-TCTTTTTGTTTAATTGTG</genome_strand>
        <mrna_strand>TAATGAACTAAATTCCCAAATGAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTATAAATGCTGCATGTTAAGGATATTAGTTGATTTTATGATATTGCTTAATACATACTGTTCCCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGGTTTGTACTGACCCCTACTTTTATGTTTATCTTCTTG-TTATTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E468386" ref_strand="+" ref_description="SGN-E468386 [cSTB-3-D13]">
      <seq>caaaggaaaaaaaaaatcaaaatttgattttctttgcgcaaaaatgggtgctattgaaatatttcttgtctctctcatgattgcatcgtgtctcgtccctagcgtttccgctgcaaccagacactataaatttgaaataaaaatgcaaaatgtgacacgactatgtcacacaaagagtatagttacagtaaatggacaatttcctggacctagaattgtggctagggaaggtgatcgtcttgaaattgaagttgtcaatcatgttcacaacaacatttctatccattggcatggaattcgacaagttcgtagtggatgggcagatggaccagcctatgtaacacaatgtccaattcaaactggccacaaatatttgtataatttcactataattggccaaagaggaactttttggtggcatgcacatatttcatggttgagatcaactctctatggtcctattattattcttcctaaaaaaaatactccttatccatttgctaaaccatacaaagaagttcccataatctttggagaatggttcaatgctgatactgaagctataatttcccaagctttacaaacaggtggaggccctaatgtttctgatgcttatactatcaatggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="-" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="14693" stop="13207"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14397" g_stop="14261" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="0.839"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14260" i_stop="14175" i_length="86">
            <donor d_prob="0.972" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14174" g_stop="14023" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="288" r_length="152" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14022" i_stop="13937" i_length="86">
            <donor d_prob="0.980" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13936" g_stop="13692" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="533" r_length="245" r_score="0.951"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13691" i_stop="13603" i_length="89">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.970" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13602" g_stop="13507" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="629" r_length="96" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="-" ref_id="SGN-E468386" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E468386" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14397" e_stop="14261"/>
          <exon e_start="14174" e_stop="14023"/>
          <exon e_start="13936" e_stop="13692"/>
          <exon e_start="13602" e_stop="13507"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTGTAACAAAACAAAAAAGATTTCATTTTCTTAGCACAAAAAATGGGCGCTACTGAAATATTTCTCTTATCTCTGATGATTGCATCGTGTCTCCTCTCTAGCGTTTCCGCTGCAACCAGACACTATAAATTTGAAGTAAATTCAATTTTTTGATTTAGAATTAATTAGTATTTAGTATGTGTCGATACTAACTTCTTCTCTCTCTTTTTTGCGCGTTTCAGATAAAAATGCAAAATGTGACACGACTATGTCACACAAAGAGTATAGTTACAGTAAATGGACAATTTCCTGGACCTAAAATTGTGGCAAGGGAAGGTGATCGTCTTGAAATTGAAGTTGTCAATCATGTTCACAACAATATCTCCATCCATTGGTAAACAAATAAATATTTATTTTTGTGAAATAGTTTATAAGGTTCAACGAGTATTTAATATTTAACGATTATTATTATATATATAGGCATGGAATTCGACAAGTTCGTAGTGGATGGGCCGATGGACCAGCTTATGTAACACAATGTCCAATTCAAAATGGTCAAAAATATGTGTATAATTTCACTATAATTGGTCAAAGAGGAACTTTTTGGTGGCATGCACATATTTCATGGTTGAGATCAACTCTCTATGGTCCTATTATTATTTTACCTAACAAAAATACTCCTTATCCATTTGCTAAACCATACAAAGAAATTCCCATTATCTTTGGTAATTTTTATAATCCTTCACTAATAATTTGTCTATTAGAAAATTAATGATTAGAATACTAATAATAATAATATATTTATGTCACACAGGAGAATGGTTCAATGCTGATACTGAAGCTATAATTTCACAAGCTTTACAAACAGGTGGAGGTCCTAATGTTTCCGATGCTTATACTATCAATGGAC</genome_strand>
        <mrna_strand>CAAAGGAAAAAAAAAATCAAAATTTGATTTTCTTTGCGC-AAAAATGGGTGCTATTGAAATATTTCTTGTCTCTCTCATGATTGCATCGTGTCTCGTCCCTAGCGTTTCCGCTGCAACCAGACACTATAAATTTGAA......................................................................................ATAAAAATGCAAAATGTGACACGACTATGTCACACAAAGAGTATAGTTACAGTAAATGGACAATTTCCTGGACCTAGAATTGTGGCTAGGGAAGGTGATCGTCTTGAAATTGAAGTTGTCAATCATGTTCACAACAACATTTCTATCCATTG......................................................................................GCATGGAATTCGACAAGTTCGTAGTGGATGGGCAGATGGACCAGCCTATGTAACACAATGTCCAATTCAAACTGGCCACAAATATTTGTATAATTTCACTATAATTGGCCAAAGAGGAACTTTTTGGTGGCATGCACATATTTCATGGTTGAGATCAACTCTCTATGGTCCTATTATTATTCTTCCTAAAAAAAATACTCCTTATCCATTTGCTAAACCATACAAAGAAGTTCCCATAATCTTTG.........................................................................................GAGAATGGTTCAATGCTGATACTGAAGCTATAATTTCCCAAGCTTTACAAACAGGTGGAGGCCCTAATGTTTCTGATGCTTATACTATCAATGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E330288" ref_strand="+" ref_description="SGN-E330288 [cTOD-4-J5]">
      <seq>ttttgtatcatccggggaaggccaatgttgtggccgatgctttgagtaggaagactcatagcatggggagtcttgcatctcttagtgttgaggaaagaccattggctagagatgttcaattgttagctaacagtcttgtccgattacagatctcagaggagagtgatgggatgattgcttttattgaggctcgatcttctttagtcaagcagattcgtgcacaccagtttgatgacgaaaaattatgtctcattcgagacaaagtattgagaggggaagctaaggaggttgtccttgattctgatggtgtcttgaggatcggaggcaggatttgtgtgcccaagacaggcgatttgattagattgatccttgaggaggcccattgttctcgatattctatgcatccgggagaggcgaaaatgtatcatgatctgagtcagcattactggtggtgtgggatgaagagagatattacagactttgttttgaggtgtttgacttgccagttggtcaagtgtgagcaccagtggcctgggggtgtatctcaaaggatgcctattcttacttggacgtgggagtggattacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="-" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="21717" stop="20530"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21417" g_stop="20830" g_length="588"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="588" r_length="588" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="-" ref_id="SGN-E330288" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330288" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21417" e_stop="20830"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTGTATCATCCAGGAAAGGCCAATGTTGTGGCCGATGCTCTGAGTAGGAAGACTCCTAGCATAGGGAGTCTTACAGCGCTTAGTATTGAGGAGAGACCATTGGCTAGAGATGTGCAGATATTAGCTAACAGTCTTGTCCGCTTGCAGATTTCAGAAGAGAGTGATGGGGTGATTGCTTTTATTGAGGCTCGGTCTTCTTTAGTCGAGCAAATTCGTGCACACCAGTTTGATGATGAAAAATTATGTCTCATTCGAGACAAAGTATTGAGAGGGGAAGCTAAGGAGGCTGTCCTTGATTCTGATGGTGTCTTGCGGATCGGAGGCAGAATTTGTGTGCCCAGGACAGGCGATTTGATTAGATTAATTCTTGAGGAGGCCCATTGTTCTCGGTATTCCATCCATCCGGGAGCAGCGAAGATGTATCATGATCTGAGTCAGCATTACTGATGGTGTGAGATGAAGAGAGATATTTAAGACTTTGTTTCGAGGTGTTTGACTTGCCAGCCGGTCAAGTGTGAGCACCAGCGGCCCGGGGGTGTATCTCAGATGATGCCTATTCCTACTTGGAAGTGGGAGAGGATTACTA</genome_strand>
        <mrna_strand>TTTTGTATCATCCGGGGAAGGCCAATGTTGTGGCCGATGCTTTGAGTAGGAAGACTCATAGCATGGGGAGTCTTGCATCTCTTAGTGTTGAGGAAAGACCATTGGCTAGAGATGTTCAATTGTTAGCTAACAGTCTTGTCCGATTACAGATCTCAGAGGAGAGTGATGGGATGATTGCTTTTATTGAGGCTCGATCTTCTTTAGTCAAGCAGATTCGTGCACACCAGTTTGATGACGAAAAATTATGTCTCATTCGAGACAAAGTATTGAGAGGGGAAGCTAAGGAGGTTGTCCTTGATTCTGATGGTGTCTTGAGGATCGGAGGCAGGATTTGTGTGCCCAAGACAGGCGATTTGATTAGATTGATCCTTGAGGAGGCCCATTGTTCTCGATATTCTATGCATCCGGGAGAGGCGAAAATGTATCATGATCTGAGTCAGCATTACTGGTGGTGTGGGATGAAGAGAGATATTACAGACTTTGTTTTGAGGTGTTTGACTTGCCAGTTGGTCAAGTGTGAGCACCAGTGGCCTGGGGGTGTATCTCAAAGGATGCCTATTCTTACTTGGACGTGGGAGTGGATTACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E279140" ref_strand="+" ref_description="SGN-E279140 [cLEL-4-H21](-)">
      <seq>gtgaaccgtacgagccatgacccgggccataagaacccttagatgtctggccaccctcaaatgtcggcatagatgcatgaataggtccccgctgctgaaaagaaccactcactctctgtgatcccctacctccagatgaggcaccctgaaattgacctgatatacgagctcttttagggtccccaaactcctctctctccatcaattctgcctctttggcggcgctcacaatagactggaaagaagtcccccctagatgtccgaaacacagctgacctgatagagaaagtcaatcccctcacaaatctacggatcctctctgtttcatttggaataatggccaacgcatgcctagacaactggcaaaaacgcgccttacactctgtaaccgataaaccatcctgtctcagactctcaactcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="23248" stop="24276"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23548" g_stop="23976" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="425" r_length="425" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E279140" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279140" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23548" e_stop="23976"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAACCGTATGAGGTCTGACCCGGGCTATAAGAACCCCTAGATGTATCGCCACCCTCAAATGTCGGCATAGATGCATGAATAGGTCCCCGCTGCTGAAAAGAACCACTCACTCTCTGTGATCCCCTACCTCCAGATGAGGCACCATGAAACTGGCCTGATATACGGGCCCTTTTAGGGTCCCCAAACTCCTCTCTCTCCATCAATTCTGCCTCTTTGGCGGCGCTCACAATGGACTGGAAAGAAGCCCCCTCCCTAGATGCCCGAAACACAGCTGACCTGATAGAGAAAGTCAATCCCCTCACAAATCTGCGGATCCTCTCTGTCTCATTTGGAATAATGGCCAACGCATGCCTAGACAACTGGCAAAAACACGCCTCATACTCCGTAACCGATAAACCATCCTGTCTCAGACTCTCAAACCTCAAGC</genome_strand>
        <mrna_strand>GTGAACCGTACGAGCCATGACCCGGGCCATAAGAACCCTTAGATGTCTGGCCACCCTCAAATGTCGGCATAGATGCATGAATAGGTCCCCGCTGCTGAAAAGAACCACTCACTCTCTGTGATCCCCTACCTCCAGATGAGGCACCCTGAAATTGACCTGATATACGAGCTCTTTTAGGGTCCCCAAACTCCTCTCTCTCCATCAATTCTGCCTCTTTGGCGGCGCTCACAATAGACTGGAAAGAAG-TCCC-CCCTAGATGTCCGAAACACAGCTGACCTGATAGAGAAAGTCAATCCCCTCACAAATCTACGGATCCTCTCTGTTTCATTTGGAATAATGGCCAACGCATGCCTAGACAACTGGCAAAAACGCGCCTTACACTCTGTAACCGATAAACCATCCTGTCTCAGACTCTC-AA-CTCGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E718284" ref_strand="+" ref_description="SGN-E718284 [FC04AH09]">
      <seq>aatcggccgaattgatctcaaagaaaacatcccataagaagttatattcaaaaggtaaaaaatatggttagttataagatcaaattctctcttttttcattcatctttctactaaacctcattttgagaagttgtggggcgccatttagcagcatacgagtggtttacatcatcgacgcccttgagagtagttctaaacctttaactgttcactgtcaatctaaagatgataatctaggatataaaaatcttcattcaggagaggaatataactttagatttcaagagaaattttttggtggtacacttttcttttgtcatttttggtgggatgacaaaaatataatatttgatgtttataatgatgatatagctacattttgtggagatttaatccctttagaaggatttgattatgaatgtttttggaaggtgcaagaagatggattttactttgcaccccatagagatcctccatctggatatgagaaaaaacatgattggtcaaaagtattagtttaatttaaataaaatgttttgagtcctcttttaaggtaatgaaaatgaagaaaaaatattataaaaaaacttaaaaatagtcattataaataattaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="-" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="30393" stop="19257"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30093" g_stop="29489" g_length="605"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="618" r_length="605" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29488" i_stop="29200" i_length="289">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.68"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29199" g_stop="29156" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="619" r_stop="662" r_length="44" r_score="0.682"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="-" ref_id="SGN-E718284" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E718284" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30093" e_stop="29489"/>
          <exon e_start="29199" e_stop="29156"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTCAAAGAAAACATAACAAAAGAAGTTATATTCAAAAGGTAAAAAATATGGTTAGTTATAAGATCAAATTCTCTCTTTTTTCATTCATCTTTCTACTAAACCTCATTTTGAGAAGTTGTGGGGCGCCATTTAGCAGCATACGAGTGGTTTACATCATCGACGCCCTTGAGAGTAGTTCTAAACCTTTAACTGTTCACTGTCAATCTAAAGATGATAATCTAGGATATAAAAATCTTCATTCAGGAGAGGAATATAACTTTAGATTTCAAGAGAAATTTTTTGGTGGTACACTTTTCTTTTGTCATTTTTGGTGGGATGACAAAAATATAATATTTGATGTTTATAATGATGATATAGCTACATTTTGTGGAGATTTAATCCCTTTAGAAGGATTTGATTATGAATGTTTTTGGAAGGTGCAAGAAGATGGATTTTACTTTGCACCCCATAGAGATCCTCCATCTGGATATGAGAAAAAACATGATTGGTCAAAAGTATTAGTTTAATTTAAATAAAATGTTTTGAGTCCTCTTTTAAGGTAATGAAAATGAAGAAAAAATATTATAAAAAAACTTAAAAATAGTCATTATAAATAAATACAAGTGTTTCTAAAGATATTTAGATTTTTAAAGTCCAACTTTGAAAAGATCATTAATTAATAAAAGTGAATAATAATTTAAATTTTTGGCTTAAAGTTATTTGCATAATTCAATTAGACATTTTAACTAGGACTTGTACTTATTAAACATCTCTATCATTTCAAATTTGAACTATTTGAACATTTTTTTGAGAATAAACTAAAAGTAGAAAATATGTGAAATATGACATGTCAATTAGATTAATAAAATAATGACATGTATTATTTTGAGCCCAAAAAATTATATTATGAAGTAAAGAAAAAAAGAATTATTTTAAAGTAAAAAAGAAATGAAAAA</genome_strand>
        <mrna_strand>GATCTCAAAGAAAACATCCCATAAGAAGTTATATTCAAAAGGTAAAAAATATGGTTAGTTATAAGATCAAATTCTCTCTTTTTTCATTCATCTTTCTACTAAACCTCATTTTGAGAAGTTGTGGGGCGCCATTTAGCAGCATACGAGTGGTTTACATCATCGACGCCCTTGAGAGTAGTTCTAAACCTTTAACTGTTCACTGTCAATCTAAAGATGATAATCTAGGATATAAAAATCTTCATTCAGGAGAGGAATATAACTTTAGATTTCAAGAGAAATTTTTTGGTGGTACACTTTTCTTTTGTCATTTTTGGTGGGATGACAAAAATATAATATTTGATGTTTATAATGATGATATAGCTACATTTTGTGGAGATTTAATCCCTTTAGAAGGATTTGATTATGAATGTTTTTGGAAGGTGCAAGAAGATGGATTTTACTTTGCACCCCATAGAGATCCTCCATCTGGATATGAGAAAAAACATGATTGGTCAAAAGTATTAGTTTAATTTAAATAAAATGTTTTGAGTCCTCTTTTAAGGTAATGAAAATGAAGAAAAAATATTATAAAAAAACTTAAAAATAGTCATTATAAATAATTAAAA.................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E200845" ref_strand="+" ref_description="SGN-E200845 [cLEC-5-G3]">
      <seq>aaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaatttatacacttctgtgtatatagcgagataggcgagcgagaatggagagtggcgagcgagatttttgggagggagacgcctgacaaactttagctaacgtttgctatggagcacaattaaatcaaactctagctactccatttagttagattactag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="-" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="34240" stop="33194"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33940" g_stop="33494" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="-" ref_id="SGN-E200845" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33940" e_stop="33494"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACAATATGTACAGTTCTGTTGTATAAAACTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAATAAAATGTTTGTAAATTGTATGATTAAGTGTATAACACGAAGATATAGATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACTGAAAAAGAA-TTATACATTGCTGTGTATAAAGCGAGAGAGACGAGCGAGAATGGAGAGTGGCGAGCGAGATTTTTGGGAGAGAGACG-CTGGCAAATTTTAGCTAATGTTTGCTATGGAGCACAATTAAATCAAACCATAGCTATTCCATTTATTTTAGGTTATTAG</genome_strand>
        <mrna_strand>AAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAATTTATACACTTCTGTGTATATAGCGAGATAGGCGAGCGAGAATGGAGAGTGGCGAGCGAGATTTTTGGGAGGGAGACGCCTGACAAACTTTAGCTAACGTTTGCTATGGAGCACAATTAAATCAAACTCTAGCTACTCCATTTA-GTTAGATTACTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E393076" ref_strand="+" ref_description="SGN-E393076 [TUS-37-J4]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaataaaaacagaatttatttttttttgtgtatatagcgagatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="-" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="34241" stop="33320"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33941" g_stop="33620" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="-" ref_id="SGN-E393076" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>322</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33941" e_stop="33620"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACAATATGTACAGTTCTGTTGTATAAAACTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAATAAAATGTTTGTAAATTGTATGATTAAGTGTATAACACGAAGATATAGATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACTGAAAAAGAA-TTATACATTGCTGTGTATAAAGCGAGAGAG</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAAAAACAGAATTTATTTTTTTTTGTGTATATAGCGAGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E393075" ref_strand="+" ref_description="SGN-E393075 [TUS-37-J2]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaggttttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="-" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="34241" stop="33346"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33941" g_stop="33651" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="293" r_length="293" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="-" ref_id="SGN-E393075" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>291</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33941" e_stop="33651"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACAATATGTACAGTTCTGTTGTATAAAACTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAATAAAATGTTTGTAAATTGTATGATTAAGTGTATAACACGAAGATATAGATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACTGAAAAAGA</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E736170" ref_strand="+" ref_description="SGN-E736170 [LC04CE03]">
      <seq>taaaatattttcttaacaaattacagagagtaattttcaaataaacttttgttattttgtgagtctttagagttagtcaagtacaaatggctacctccatctcaaccattggagctgtcaacaagttgagtttgaacaactctgttgtggaacttcagttccaccaacagccttctttggcaaaaccttaaagaaagtgaacaacaaagtttccagcacaaacatctcaaacaagaacttgaggctggttgctcaagaaaaagaaattgatgagaagaaacagactgatggggacagatggaagggacttgttaacgatgtgtccgatgatcaacaagacattgcaaggggtaaaggtttggttgattcgcttttccaggctccaacgggtactggtactcaccacgccatcatgaattcctatgaatacctcagccaaggtcttcgccaatataacttggacaacaagttggacggattctacatcgctcctgctttcatggacaagcttgttgttcacatcaccaagaacttcttaacgttgtccaacatcaaggttccacttattttgggtgtttggggaggaaaaggtcaaggtaaatcattccaatgtgagcttgtcttcagaaagatgggaatcaacccaattatgatgagtgctggagaattagaaagtggaaatgcaggagagccagctaaattgatcaggcaaaggtacagagaggccgcggaaatcatcaggaagggaaacatgtgttgcctcttcatcaacgatcttgatgcaggagccggtagaatgggtggaactacacaatacactgtcaacaaccaaatgggtgaatgctacactcatgaacattgctgataccccgacgaatgtccaactccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="41223" stop="44153"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41523" g_stop="41647" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41648" i_stop="42297" i_length="650">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42298" g_stop="42623" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="450" r_length="325" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42624" i_stop="42762" i_length="139">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42763" g_stop="42868" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="556" r_length="106" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42869" i_stop="42957" i_length="89">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42958" g_stop="43043" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="642" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43044" i_stop="43607" i_length="564">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43608" g_stop="43853" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="643" r_stop="889" r_length="247" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E736170" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>889</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736170" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41523" e_stop="41647"/>
          <exon e_start="42298" e_stop="42623"/>
          <exon e_start="42763" e_stop="42868"/>
          <exon e_start="42958" e_stop="43043"/>
          <exon e_start="43608" e_stop="43853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATATTTTCTTAACAAATTACAGAGAGTAATTTTCAAATAAACTTTTGTTATTTTGTGAGTCTTTAGAGTTAGTCAAGTACAAATGGCTACCTCCATCTCAACCATTGGAGCTGTCAACAAGGTAATGGTACTGTGTTAAACACTTACTAATTGATCTTTTGGTGTGTGTAAAAAAATGAGAATTAGGAATGGGAGTCAATAGTTATTCGCTTTATACTAAATGAAATGAAGTATTTTCGGTATCTTTTTACTTTTTCTTAAAGTTGAACTCCAGAAAACACGTTTAACTATAAAATTTTAAAATTCAACTCATTTTCAATAAGTTGGAAAACAACAAAAGGCGTTTTCACTCCAAATTACTCGGAAATATCCAAAAACAACTTCAATTTTGTATTCATAATCTAACGCAATTTCCAACATTCAAATATCATTTTCTTTTTTAAAACAAAAACTATAATTGAAAAAATTCACACTTAAACATGGACGAACGCCTCTTAAACCGGATGATTTAAGAATGTTTTTTTGTTAAGATTTGATCATAGGCAAGGGCGGAGTCGCAATGTAAGTTATGAGTTCAGTAGAACACAGTAACTATTACTCAAACTTAATATTAGTGTTAAAAGAATTACTTAGTATGTATAAATATCTTATTGAGCAAAACAGATTATGGTTCAAAACTTATAAACTAAAAATTCTAACTCTGACACTCTGATAGAAAATAGACTATAGATTGTGTGGCTATTACTAAGTAAACATCTTTTTTTTATGCAGTTGAGTTTGAACAACTCTGTTGTTGGAACTTCAGTTCCACCAACAGCCTTCTTTGGCAAAACCTTAAAGAAAGTGAACAACAAAGTTTCCAGCACAAACATCTCAAACAAGAACTTGAGGCTGGTTGCTCAAGAAAAAGAAATTGATGAGAAGAAACAGACTGATGGGGACAGATGGAAGGGACTTGTTAACGATGTGTCCGATGATCAACAAGACATTGCAAGGGGTAAAGGTTTGGTTGATTCGCTTTTCCAGGCTCCAACGGGTACTGGTACTCACCACGCCATCATGAATTCCTATGAATACCTCAGCCAAGGTCTTCGCCAGTAAGTTGAACTGTGTGATCATCTTATCTAAAAGTTTATACTGCTGTTACAACTTGTATGATCATATTGTCTAAATGGTTAAGTTGTTAGAGAGAACACACTTTTATTTACTTGATTATATGTTTTGACATTCGATTAGATATAACTTGGACAACAAGTTGGACGGATTCTACATCGCTCCTGCTTTCATGGACAAGCTTGTTGTTCACATCACCAAGAACTTCTTAACGTTGCCCAACATCAAGGTCTGTTAAAGAGATGTTTGTTAAAAAATTCTGGCTTAAGTAGTGTTTTGTGTAAAAGAAGATTTGAACTTTGTTTATGTTTCTTACAGGTTCCACTTATTTTGGGTGTTTGGGGAGGAAAAGGTCAAGGTAAATCATTCCAATGTGAGCTTGTCTTCAGAAAGATGGGAATCAAGTGAGTATTGCCTTAAATTACATACTATCTTTATTCGGATTTTTTTTTCCGAGGAAATGGACTACAGTTACTTCTAAAACAATCTCTCTACCTACATGAGATAGGGATAAGGTCTCTATATATACGGTTCACCCTCTCCAAACCTCACTTGTGGGATTTAATTTCACTAAGAATGTTGTTGCTGTATATAGACTAAAGTTACTTTTGAAAGAACCTATCTTACCTTCACGAGATAGGGGTAAAATCTGCATACAGTTTACCCTCTCTAGACCCCACTTGTAGGATTTCACTGAGAATGTTATTGTTGTAAGTGGATTAAAGTCTTCCGAATCATCCTTTCTAGCTACCTCCACGAGGTAGGTGTAAGGTCTACGTATAGTCTACTCTCTCCAAACTCGAATTGTGGGATTTCACTGAAAGTTACTTTAGAAACAACCTCTCTACCTTCACGAGCTAGAGGTAAGATTTGCATACAATCTTACCTCTCCAGACCTCACTTGTGGGATTTCAATGAGAATGTTGTTGTAAAAGTTACTTACAATGTTTGGTTTATTAAACTTGCAGCCCAATTATGATGAGTGCTGGAGAATTAGAAAGTGGAAATGCAGGAGAGCCAGCTAAATTGATCAGGCAAAGGTACAGAGAGGCCGCGGAAATCATCAGGAAGGGAAACATGTGTTGCCTCTTCATCAACGATCTTGATGCAGGAGCCGGTAGAATGGGTGGAACTACACAATACACTGTCAACAACCAAAT-GGTGAATGCTACACTCATGAACATTGCTGATAACCCGACGAATGTCCAACTCCC</genome_strand>
        <mrna_strand>TAAAATATTTTCTTAACAAATTACAGAGAGTAATTTTCAAATAAACTTTTGTTATTTTGTGAGTCTTTAGAGTTAGTCAAGTACAAATGGCTACCTCCATCTCAACCATTGGAGCTGTCAACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGTTTGAACAACTCTGTTG-TGGAACTTCAGTTCCACCAACAGCCTTCTTTGGCAAAACCTTAAAGAAAGTGAACAACAAAGTTTCCAGCACAAACATCTCAAACAAGAACTTGAGGCTGGTTGCTCAAGAAAAAGAAATTGATGAGAAGAAACAGACTGATGGGGACAGATGGAAGGGACTTGTTAACGATGTGTCCGATGATCAACAAGACATTGCAAGGGGTAAAGGTTTGGTTGATTCGCTTTTCCAGGCTCCAACGGGTACTGGTACTCACCACGCCATCATGAATTCCTATGAATACCTCAGCCAAGGTCTTCGCCA...........................................................................................................................................ATATAACTTGGACAACAAGTTGGACGGATTCTACATCGCTCCTGCTTTCATGGACAAGCTTGTTGTTCACATCACCAAGAACTTCTTAACGTTGTCCAACATCAAG.........................................................................................GTTCCACTTATTTTGGGTGTTTGGGGAGGAAAAGGTCAAGGTAAATCATTCCAATGTGAGCTTGTCTTCAGAAAGATGGGAATCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAATTATGATGAGTGCTGGAGAATTAGAAAGTGGAAATGCAGGAGAGCCAGCTAAATTGATCAGGCAAAGGTACAGAGAGGCCGCGGAAATCATCAGGAAGGGAAACATGTGTTGCCTCTTCATCAACGATCTTGATGCAGGAGCCGGTAGAATGGGTGGAACTACACAATACACTGTCAACAACCAAATGGGTGAATGCTACACTCATGAACATTGCTGATACCCCGACGAATGTCCAACTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E313841" ref_strand="+" ref_description="SGN-E313841 [cTOA-17-K20]">
      <seq>taaaatattttcttaacaaattaccgagagtaattttcaaataaacttttgttattttgcgagtctttagagttagtcaagtacaaatggctacctatatctcaaccattggagctgtcaacaagatgagtttgaacaactctgttgtgggaactttagttccaccaacagccttctttggcaaaaccttaaagaaagtgaacaataaagtttccagcacaaacatcttaaacaagaacttgaggctggttgctcaagaaaaagaaattgatgagaagaaacagactgatggggacagatggaagggacttgttaacgatgtgaccgatgatcaacaagacattgcaaggggtaaaggtttggttgattctgttttccaggctccaacgggtactggtactcaccacgccatcatgaattcctatgaatacctcagtcaaggtcttcgtcaatataacttggacaacaagttggacggattctacatcgctcctgctttcatggacaagcttgttgttcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="41223" stop="43132"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41523" g_stop="41647" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41648" i_stop="42297" i_length="650">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42298" g_stop="42623" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="451" r_length="326" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42624" i_stop="42762" i_length="139">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42763" g_stop="42832" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="521" r_length="70" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E313841" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313841" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41523" e_stop="41647"/>
          <exon e_start="42298" e_stop="42623"/>
          <exon e_start="42763" e_stop="42832"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATATTTTCTTAACAAATTACAGAGAGTAATTTTCAAATAAACTTTTGTTATTTTGTGAGTCTTTAGAGTTAGTCAAGTACAAATGGCTACCTCCATCTCAACCATTGGAGCTGTCAACAAGGTAATGGTACTGTGTTAAACACTTACTAATTGATCTTTTGGTGTGTGTAAAAAAATGAGAATTAGGAATGGGAGTCAATAGTTATTCGCTTTATACTAAATGAAATGAAGTATTTTCGGTATCTTTTTACTTTTTCTTAAAGTTGAACTCCAGAAAACACGTTTAACTATAAAATTTTAAAATTCAACTCATTTTCAATAAGTTGGAAAACAACAAAAGGCGTTTTCACTCCAAATTACTCGGAAATATCCAAAAACAACTTCAATTTTGTATTCATAATCTAACGCAATTTCCAACATTCAAATATCATTTTCTTTTTTAAAACAAAAACTATAATTGAAAAAATTCACACTTAAACATGGACGAACGCCTCTTAAACCGGATGATTTAAGAATGTTTTTTTGTTAAGATTTGATCATAGGCAAGGGCGGAGTCGCAATGTAAGTTATGAGTTCAGTAGAACACAGTAACTATTACTCAAACTTAATATTAGTGTTAAAAGAATTACTTAGTATGTATAAATATCTTATTGAGCAAAACAGATTATGGTTCAAAACTTATAAACTAAAAATTCTAACTCTGACACTCTGATAGAAAATAGACTATAGATTGTGTGGCTATTACTAAGTAAACATCTTTTTTTTATGCAGTTGAGTTTGAACAACTCTGTTGTTGGAACTTCAGTTCCACCAACAGCCTTCTTTGGCAAAACCTTAAAGAAAGTGAACAACAAAGTTTCCAGCACAAACATCTCAAACAAGAACTTGAGGCTGGTTGCTCAAGAAAAAGAAATTGATGAGAAGAAACAGACTGATGGGGACAGATGGAAGGGACTTGTTAACGATGTGTCCGATGATCAACAAGACATTGCAAGGGGTAAAGGTTTGGTTGATTCGCTTTTCCAGGCTCCAACGGGTACTGGTACTCACCACGCCATCATGAATTCCTATGAATACCTCAGCCAAGGTCTTCGCCAGTAAGTTGAACTGTGTGATCATCTTATCTAAAAGTTTATACTGCTGTTACAACTTGTATGATCATATTGTCTAAATGGTTAAGTTGTTAGAGAGAACACACTTTTATTTACTTGATTATATGTTTTGACATTCGATTAGATATAACTTGGACAACAAGTTGGACGGATTCTACATCGCTCCTGCTTTCATGGACAAGCTTGTTGTTCAC</genome_strand>
        <mrna_strand>TAAAATATTTTCTTAACAAATTACCGAGAGTAATTTTCAAATAAACTTTTGTTATTTTGCGAGTCTTTAGAGTTAGTCAAGTACAAATGGCTACCTATATCTCAACCATTGGAGCTGTCAACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGTTTGAACAACTCTGTTGTGGGAACTTTAGTTCCACCAACAGCCTTCTTTGGCAAAACCTTAAAGAAAGTGAACAATAAAGTTTCCAGCACAAACATCTTAAACAAGAACTTGAGGCTGGTTGCTCAAGAAAAAGAAATTGATGAGAAGAAACAGACTGATGGGGACAGATGGAAGGGACTTGTTAACGATGTGACCGATGATCAACAAGACATTGCAAGGGGTAAAGGTTTGGTTGATTCTGTTTTCCAGGCTCCAACGGGTACTGGTACTCACCACGCCATCATGAATTCCTATGAATACCTCAGTCAAGGTCTTCGTCA...........................................................................................................................................ATATAACTTGGACAACAAGTTGGACGGATTCTACATCGCTCCTGCTTTCATGGACAAGCTTGTTGTTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E701691" ref_strand="+" ref_description="SGN-E701691 [FA16CG02]">
      <seq>aaactattttcttaacaaattacagagagtaattttcaaataaacttttgttattttgtgagtctttagagttagtcaagtacaaatggctacctccatctcaaccattggagctgtcaacaagttgagtttgaacaactctgttgttggaacttcagttccaccaacagccttctttggcaaaaccttaaagaaagtgaacaacaaagtttccagcacaaacatctcaaacaagaacttgaggctggttgctcaagaaaaagaaattgatgagaagaaacagactgatggggacagatggaagggacttgttaacgatgtgtccgatgatcaacaagacattgcaaggggtaaaggtttggttgattcgcttttccaggctccaacgggtactggtactcaccacgccatcatgaattcctatgaatacctcagccaaggtcttcgccaatataacttggacaacaagttggacggattctacatcgctcctgctttcatggacaagcttgttgttcacatcaccaagaacttcttaacgttgtccaacatcaaggttccacttattttgggtgtttggggaggaaaaggtcaaggtaaatcattccaatgtgagcttgtcttcagaaagatgggaatcaacccaattatgatgagtgctggagaattagaaagtggaaatgcaggagagccagctaaattgatcaggcaaaggtacagagaggccgcggaaatcatcaggaagggaaacatgtgttgcctcttcatcaacgatcttgatgcaggagccggtagaatgggtggaactacacaatacactgtcaacaaccaaatggtgaatgctacactcatgaacattgctgataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="41225" stop="44132"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41524" g_stop="41647" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41648" i_stop="42297" i_length="650">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42298" g_stop="42623" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="450" r_length="326" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42624" i_stop="42762" i_length="139">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42763" g_stop="42868" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="556" r_length="106" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42869" i_stop="42957" i_length="89">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42958" g_stop="43043" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="642" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43044" i_stop="43607" i_length="564">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43608" g_stop="43832" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="643" r_stop="867" r_length="225" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E701691" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>867</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701691" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41524" e_stop="41647"/>
          <exon e_start="42298" e_stop="42623"/>
          <exon e_start="42763" e_stop="42868"/>
          <exon e_start="42958" e_stop="43043"/>
          <exon e_start="43608" e_stop="43832"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATATTTTCTTAACAAATTACAGAGAGTAATTTTCAAATAAACTTTTGTTATTTTGTGAGTCTTTAGAGTTAGTCAAGTACAAATGGCTACCTCCATCTCAACCATTGGAGCTGTCAACAAGGTAATGGTACTGTGTTAAACACTTACTAATTGATCTTTTGGTGTGTGTAAAAAAATGAGAATTAGGAATGGGAGTCAATAGTTATTCGCTTTATACTAAATGAAATGAAGTATTTTCGGTATCTTTTTACTTTTTCTTAAAGTTGAACTCCAGAAAACACGTTTAACTATAAAATTTTAAAATTCAACTCATTTTCAATAAGTTGGAAAACAACAAAAGGCGTTTTCACTCCAAATTACTCGGAAATATCCAAAAACAACTTCAATTTTGTATTCATAATCTAACGCAATTTCCAACATTCAAATATCATTTTCTTTTTTAAAACAAAAACTATAATTGAAAAAATTCACACTTAAACATGGACGAACGCCTCTTAAACCGGATGATTTAAGAATGTTTTTTTGTTAAGATTTGATCATAGGCAAGGGCGGAGTCGCAATGTAAGTTATGAGTTCAGTAGAACACAGTAACTATTACTCAAACTTAATATTAGTGTTAAAAGAATTACTTAGTATGTATAAATATCTTATTGAGCAAAACAGATTATGGTTCAAAACTTATAAACTAAAAATTCTAACTCTGACACTCTGATAGAAAATAGACTATAGATTGTGTGGCTATTACTAAGTAAACATCTTTTTTTTATGCAGTTGAGTTTGAACAACTCTGTTGTTGGAACTTCAGTTCCACCAACAGCCTTCTTTGGCAAAACCTTAAAGAAAGTGAACAACAAAGTTTCCAGCACAAACATCTCAAACAAGAACTTGAGGCTGGTTGCTCAAGAAAAAGAAATTGATGAGAAGAAACAGACTGATGGGGACAGATGGAAGGGACTTGTTAACGATGTGTCCGATGATCAACAAGACATTGCAAGGGGTAAAGGTTTGGTTGATTCGCTTTTCCAGGCTCCAACGGGTACTGGTACTCACCACGCCATCATGAATTCCTATGAATACCTCAGCCAAGGTCTTCGCCAGTAAGTTGAACTGTGTGATCATCTTATCTAAAAGTTTATACTGCTGTTACAACTTGTATGATCATATTGTCTAAATGGTTAAGTTGTTAGAGAGAACACACTTTTATTTACTTGATTATATGTTTTGACATTCGATTAGATATAACTTGGACAACAAGTTGGACGGATTCTACATCGCTCCTGCTTTCATGGACAAGCTTGTTGTTCACATCACCAAGAACTTCTTAACGTTGCCCAACATCAAGGTCTGTTAAAGAGATGTTTGTTAAAAAATTCTGGCTTAAGTAGTGTTTTGTGTAAAAGAAGATTTGAACTTTGTTTATGTTTCTTACAGGTTCCACTTATTTTGGGTGTTTGGGGAGGAAAAGGTCAAGGTAAATCATTCCAATGTGAGCTTGTCTTCAGAAAGATGGGAATCAAGTGAGTATTGCCTTAAATTACATACTATCTTTATTCGGATTTTTTTTTCCGAGGAAATGGACTACAGTTACTTCTAAAACAATCTCTCTACCTACATGAGATAGGGATAAGGTCTCTATATATACGGTTCACCCTCTCCAAACCTCACTTGTGGGATTTAATTTCACTAAGAATGTTGTTGCTGTATATAGACTAAAGTTACTTTTGAAAGAACCTATCTTACCTTCACGAGATAGGGGTAAAATCTGCATACAGTTTACCCTCTCTAGACCCCACTTGTAGGATTTCACTGAGAATGTTATTGTTGTAAGTGGATTAAAGTCTTCCGAATCATCCTTTCTAGCTACCTCCACGAGGTAGGTGTAAGGTCTACGTATAGTCTACTCTCTCCAAACTCGAATTGTGGGATTTCACTGAAAGTTACTTTAGAAACAACCTCTCTACCTTCACGAGCTAGAGGTAAGATTTGCATACAATCTTACCTCTCCAGACCTCACTTGTGGGATTTCAATGAGAATGTTGTTGTAAAAGTTACTTACAATGTTTGGTTTATTAAACTTGCAGCCCAATTATGATGAGTGCTGGAGAATTAGAAAGTGGAAATGCAGGAGAGCCAGCTAAATTGATCAGGCAAAGGTACAGAGAGGCCGCGGAAATCATCAGGAAGGGAAACATGTGTTGCCTCTTCATCAACGATCTTGATGCAGGAGCCGGTAGAATGGGTGGAACTACACAATACACTGTCAACAACCAAATGGTGAATGCTACACTCATGAACATTGCTGATAA</genome_strand>
        <mrna_strand>AAACTATTTTCTTAACAAATTACAGAGAGTAATTTTCAAATAAACTTTTGTTATTTTGTGAGTCTTTAGAGTTAGTCAAGTACAAATGGCTACCTCCATCTCAACCATTGGAGCTGTCAACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGTTTGAACAACTCTGTTGTTGGAACTTCAGTTCCACCAACAGCCTTCTTTGGCAAAACCTTAAAGAAAGTGAACAACAAAGTTTCCAGCACAAACATCTCAAACAAGAACTTGAGGCTGGTTGCTCAAGAAAAAGAAATTGATGAGAAGAAACAGACTGATGGGGACAGATGGAAGGGACTTGTTAACGATGTGTCCGATGATCAACAAGACATTGCAAGGGGTAAAGGTTTGGTTGATTCGCTTTTCCAGGCTCCAACGGGTACTGGTACTCACCACGCCATCATGAATTCCTATGAATACCTCAGCCAAGGTCTTCGCCA...........................................................................................................................................ATATAACTTGGACAACAAGTTGGACGGATTCTACATCGCTCCTGCTTTCATGGACAAGCTTGTTGTTCACATCACCAAGAACTTCTTAACGTTGTCCAACATCAAG.........................................................................................GTTCCACTTATTTTGGGTGTTTGGGGAGGAAAAGGTCAAGGTAAATCATTCCAATGTGAGCTTGTCTTCAGAAAGATGGGAATCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAATTATGATGAGTGCTGGAGAATTAGAAAGTGGAAATGCAGGAGAGCCAGCTAAATTGATCAGGCAAAGGTACAGAGAGGCCGCGGAAATCATCAGGAAGGGAAACATGTGTTGCCTCTTCATCAACGATCTTGATGCAGGAGCCGGTAGAATGGGTGGAACTACACAATACACTGTCAACAACCAAATGGTGAATGCTACACTCATGAACATTGCTGATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E332281" ref_strand="+" ref_description="SGN-E332281 [cTOD-17-B1]">
      <seq>aatattttcttaacaaattacagagagtaattttcaaataaacttttgttattttgtgagtctttagagttagtcaagtacaaatggctacctccatctcaaccattggagctgtcaacaagttgagtttgaacaactctgttgttggaacttcagttccaccaacagccttctttggcaaaaccttaaagaaagtgaacaacaaagtttccagcacaaacatctcaaacaagaacttgaggctggttgctcaagaaaaagaaattgatgagaagaaacagactgatggggacagatggaagggacttgttaacgatgtgtccgatgatcaacaagacattgcaaggggtaaaggtttggttgattcgcttttccaggctccaacgggtactggtactcaccacgccatcatgaattcctatgaatacctcagccaaggtcttcgccaatataacttggacaacaagttggacggattctacatcgctcctgctttcatggacaagcttgttgttcacatcaccaagaacttcttaacgttgcccaacatcaaggttccacttattttgggtgtttggggaggaaaaggtcaaggtaaatcattccaatgtgagcttgtcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="41226" stop="43326"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41526" g_stop="41647" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41648" i_stop="42297" i_length="650">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42298" g_stop="42623" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="448" r_length="326" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42624" i_stop="42762" i_length="139">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42763" g_stop="42868" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="554" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42869" i_stop="42957" i_length="89">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42958" g_stop="43026" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="623" r_length="69" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E332281" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332281" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41526" e_stop="41647"/>
          <exon e_start="42298" e_stop="42623"/>
          <exon e_start="42763" e_stop="42868"/>
          <exon e_start="42958" e_stop="43026"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATTTTCTTAACAAATTACAGAGAGTAATTTTCAAATAAACTTTTGTTATTTTGTGAGTCTTTAGAGTTAGTCAAGTACAAATGGCTACCTCCATCTCAACCATTGGAGCTGTCAACAAGGTAATGGTACTGTGTTAAACACTTACTAATTGATCTTTTGGTGTGTGTAAAAAAATGAGAATTAGGAATGGGAGTCAATAGTTATTCGCTTTATACTAAATGAAATGAAGTATTTTCGGTATCTTTTTACTTTTTCTTAAAGTTGAACTCCAGAAAACACGTTTAACTATAAAATTTTAAAATTCAACTCATTTTCAATAAGTTGGAAAACAACAAAAGGCGTTTTCACTCCAAATTACTCGGAAATATCCAAAAACAACTTCAATTTTGTATTCATAATCTAACGCAATTTCCAACATTCAAATATCATTTTCTTTTTTAAAACAAAAACTATAATTGAAAAAATTCACACTTAAACATGGACGAACGCCTCTTAAACCGGATGATTTAAGAATGTTTTTTTGTTAAGATTTGATCATAGGCAAGGGCGGAGTCGCAATGTAAGTTATGAGTTCAGTAGAACACAGTAACTATTACTCAAACTTAATATTAGTGTTAAAAGAATTACTTAGTATGTATAAATATCTTATTGAGCAAAACAGATTATGGTTCAAAACTTATAAACTAAAAATTCTAACTCTGACACTCTGATAGAAAATAGACTATAGATTGTGTGGCTATTACTAAGTAAACATCTTTTTTTTATGCAGTTGAGTTTGAACAACTCTGTTGTTGGAACTTCAGTTCCACCAACAGCCTTCTTTGGCAAAACCTTAAAGAAAGTGAACAACAAAGTTTCCAGCACAAACATCTCAAACAAGAACTTGAGGCTGGTTGCTCAAGAAAAAGAAATTGATGAGAAGAAACAGACTGATGGGGACAGATGGAAGGGACTTGTTAACGATGTGTCCGATGATCAACAAGACATTGCAAGGGGTAAAGGTTTGGTTGATTCGCTTTTCCAGGCTCCAACGGGTACTGGTACTCACCACGCCATCATGAATTCCTATGAATACCTCAGCCAAGGTCTTCGCCAGTAAGTTGAACTGTGTGATCATCTTATCTAAAAGTTTATACTGCTGTTACAACTTGTATGATCATATTGTCTAAATGGTTAAGTTGTTAGAGAGAACACACTTTTATTTACTTGATTATATGTTTTGACATTCGATTAGATATAACTTGGACAACAAGTTGGACGGATTCTACATCGCTCCTGCTTTCATGGACAAGCTTGTTGTTCACATCACCAAGAACTTCTTAACGTTGCCCAACATCAAGGTCTGTTAAAGAGATGTTTGTTAAAAAATTCTGGCTTAAGTAGTGTTTTGTGTAAAAGAAGATTTGAACTTTGTTTATGTTTCTTACAGGTTCCACTTATTTTGGGTGTTTGGGGAGGAAAAGGTCAAGGTAAATCATTCCAATGTGAGCTTGTCTTC</genome_strand>
        <mrna_strand>AATATTTTCTTAACAAATTACAGAGAGTAATTTTCAAATAAACTTTTGTTATTTTGTGAGTCTTTAGAGTTAGTCAAGTACAAATGGCTACCTCCATCTCAACCATTGGAGCTGTCAACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGTTTGAACAACTCTGTTGTTGGAACTTCAGTTCCACCAACAGCCTTCTTTGGCAAAACCTTAAAGAAAGTGAACAACAAAGTTTCCAGCACAAACATCTCAAACAAGAACTTGAGGCTGGTTGCTCAAGAAAAAGAAATTGATGAGAAGAAACAGACTGATGGGGACAGATGGAAGGGACTTGTTAACGATGTGTCCGATGATCAACAAGACATTGCAAGGGGTAAAGGTTTGGTTGATTCGCTTTTCCAGGCTCCAACGGGTACTGGTACTCACCACGCCATCATGAATTCCTATGAATACCTCAGCCAAGGTCTTCGCCA...........................................................................................................................................ATATAACTTGGACAACAAGTTGGACGGATTCTACATCGCTCCTGCTTTCATGGACAAGCTTGTTGTTCACATCACCAAGAACTTCTTAACGTTGCCCAACATCAAG.........................................................................................GTTCCACTTATTTTGGGTGTTTGGGGAGGAAAAGGTCAAGGTAAATCATTCCAATGTGAGCTTGTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E332282" ref_strand="+" ref_description="SGN-E332282 [cTOD-17-B3]">
      <seq>aatattttcttaacaaattacagagagtaattttcaaataaacttttgttattttgtgagtctttagagttagtcaagtacaaatggctacctccatctcaaccattggagctgtcaacaagttgagtttgaacaactctgttgttggaacttcagttccaccaacagccttctttggcaaaaccttaaagaaagtgaacaacaaagtttccagcacaaacatctcaaacaagaacttgaggctggttgctcaagaaaaagaaattgatgagaagaaacagactgatggggacagatggaagggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="41226" stop="42781"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41526" g_stop="41647" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41648" i_stop="42297" i_length="650">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42298" g_stop="42481" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="306" r_length="184" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E332282" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>306</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332282" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41526" e_stop="41647"/>
          <exon e_start="42298" e_stop="42481"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATTTTCTTAACAAATTACAGAGAGTAATTTTCAAATAAACTTTTGTTATTTTGTGAGTCTTTAGAGTTAGTCAAGTACAAATGGCTACCTCCATCTCAACCATTGGAGCTGTCAACAAGGTAATGGTACTGTGTTAAACACTTACTAATTGATCTTTTGGTGTGTGTAAAAAAATGAGAATTAGGAATGGGAGTCAATAGTTATTCGCTTTATACTAAATGAAATGAAGTATTTTCGGTATCTTTTTACTTTTTCTTAAAGTTGAACTCCAGAAAACACGTTTAACTATAAAATTTTAAAATTCAACTCATTTTCAATAAGTTGGAAAACAACAAAAGGCGTTTTCACTCCAAATTACTCGGAAATATCCAAAAACAACTTCAATTTTGTATTCATAATCTAACGCAATTTCCAACATTCAAATATCATTTTCTTTTTTAAAACAAAAACTATAATTGAAAAAATTCACACTTAAACATGGACGAACGCCTCTTAAACCGGATGATTTAAGAATGTTTTTTTGTTAAGATTTGATCATAGGCAAGGGCGGAGTCGCAATGTAAGTTATGAGTTCAGTAGAACACAGTAACTATTACTCAAACTTAATATTAGTGTTAAAAGAATTACTTAGTATGTATAAATATCTTATTGAGCAAAACAGATTATGGTTCAAAACTTATAAACTAAAAATTCTAACTCTGACACTCTGATAGAAAATAGACTATAGATTGTGTGGCTATTACTAAGTAAACATCTTTTTTTTATGCAGTTGAGTTTGAACAACTCTGTTGTTGGAACTTCAGTTCCACCAACAGCCTTCTTTGGCAAAACCTTAAAGAAAGTGAACAACAAAGTTTCCAGCACAAACATCTCAAACAAGAACTTGAGGCTGGTTGCTCAAGAAAAAGAAATTGATGAGAAGAAACAGACTGATGGGGACAGATGGAAGGGAC</genome_strand>
        <mrna_strand>AATATTTTCTTAACAAATTACAGAGAGTAATTTTCAAATAAACTTTTGTTATTTTGTGAGTCTTTAGAGTTAGTCAAGTACAAATGGCTACCTCCATCTCAACCATTGGAGCTGTCAACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGTTTGAACAACTCTGTTGTTGGAACTTCAGTTCCACCAACAGCCTTCTTTGGCAAAACCTTAAAGAAAGTGAACAACAAAGTTTCCAGCACAAACATCTCAAACAAGAACTTGAGGCTGGTTGCTCAAGAAAAAGAAATTGATGAGAAGAAACAGACTGATGGGGACAGATGGAAGGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E332944" ref_strand="+" ref_description="SGN-E332944 [cTOD-19-D23]">
      <seq>atattttcttgacaaattacagagagtaattttcaaataaacttttgttattttgtgagtctttacagttagtcaagtacaaatggctacctccatctcaaccattggagctgtcaacaagttgagtttgaacaactctgttgcttggaacttcagttccaccaacagccttctttggcaaaaccttaaagaaagtgaacaacaaagtttccagcacaaacatctcaaacaagaacttgatgctggttgctcaagaaaaagaaattgatgataagaaacagactgatggggacagatggaacggacttgttaacgatgtgtccgatgatcaacaagacattgcaacgggtaaaggtttggttgattctcttttccaggctccaacgggtactggtactcaccacgccatcatgaattcctatgaatacctcagccaacgtcttcgccaatataacttggacaactagttggacggattctacatcactcctgctttcatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="41227" stop="43115"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41527" g_stop="41647" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41648" i_stop="42297" i_length="650">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42298" g_stop="42623" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="448" r_length="327" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42624" i_stop="42762" i_length="139">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42763" g_stop="42815" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="501" r_length="53" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E332944" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332944" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41527" e_stop="41647"/>
          <exon e_start="42298" e_stop="42623"/>
          <exon e_start="42763" e_stop="42815"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATTTTCTTAACAAATTACAGAGAGTAATTTTCAAATAAACTTTTGTTATTTTGTGAGTCTTTAGAGTTAGTCAAGTACAAATGGCTACCTCCATCTCAACCATTGGAGCTGTCAACAAGGTAATGGTACTGTGTTAAACACTTACTAATTGATCTTTTGGTGTGTGTAAAAAAATGAGAATTAGGAATGGGAGTCAATAGTTATTCGCTTTATACTAAATGAAATGAAGTATTTTCGGTATCTTTTTACTTTTTCTTAAAGTTGAACTCCAGAAAACACGTTTAACTATAAAATTTTAAAATTCAACTCATTTTCAATAAGTTGGAAAACAACAAAAGGCGTTTTCACTCCAAATTACTCGGAAATATCCAAAAACAACTTCAATTTTGTATTCATAATCTAACGCAATTTCCAACATTCAAATATCATTTTCTTTTTTAAAACAAAAACTATAATTGAAAAAATTCACACTTAAACATGGACGAACGCCTCTTAAACCGGATGATTTAAGAATGTTTTTTTGTTAAGATTTGATCATAGGCAAGGGCGGAGTCGCAATGTAAGTTATGAGTTCAGTAGAACACAGTAACTATTACTCAAACTTAATATTAGTGTTAAAAGAATTACTTAGTATGTATAAATATCTTATTGAGCAAAACAGATTATGGTTCAAAACTTATAAACTAAAAATTCTAACTCTGACACTCTGATAGAAAATAGACTATAGATTGTGTGGCTATTACTAAGTAAACATCTTTTTTTTATGCAGTTGAGTTTGAACAACTCTGTTG-TTGGAACTTCAGTTCCACCAACAGCCTTCTTTGGCAAAACCTTAAAGAAAGTGAACAACAAAGTTTCCAGCACAAACATCTCAAACAAGAACTTGAGGCTGGTTGCTCAAGAAAAAGAAATTGATGAGAAGAAACAGACTGATGGGGACAGATGGAAGGGACTTGTTAACGATGTGTCCGATGATCAACAAGACATTGCAAGGGGTAAAGGTTTGGTTGATTCGCTTTTCCAGGCTCCAACGGGTACTGGTACTCACCACGCCATCATGAATTCCTATGAATACCTCAGCCAAGGTCTTCGCCAGTAAGTTGAACTGTGTGATCATCTTATCTAAAAGTTTATACTGCTGTTACAACTTGTATGATCATATTGTCTAAATGGTTAAGTTGTTAGAGAGAACACACTTTTATTTACTTGATTATATGTTTTGACATTCGATTAGATATAACTTGGACAACAAGTTGGACGGATTCTACATCGCTCCTGCTTTCATGG</genome_strand>
        <mrna_strand>ATATTTTCTTGACAAATTACAGAGAGTAATTTTCAAATAAACTTTTGTTATTTTGTGAGTCTTTACAGTTAGTCAAGTACAAATGGCTACCTCCATCTCAACCATTGGAGCTGTCAACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGTTTGAACAACTCTGTTGCTTGGAACTTCAGTTCCACCAACAGCCTTCTTTGGCAAAACCTTAAAGAAAGTGAACAACAAAGTTTCCAGCACAAACATCTCAAACAAGAACTTGATGCTGGTTGCTCAAGAAAAAGAAATTGATGATAAGAAACAGACTGATGGGGACAGATGGAACGGACTTGTTAACGATGTGTCCGATGATCAACAAGACATTGCAACGGGTAAAGGTTTGGTTGATTCTCTTTTCCAGGCTCCAACGGGTACTGGTACTCACCACGCCATCATGAATTCCTATGAATACCTCAGCCAACGTCTTCGCCA...........................................................................................................................................ATATAACTTGGACAACTAGTTGGACGGATTCTACATCACTCCTGCTTTCATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E332069" ref_strand="+" ref_description="SGN-E332069 [cTOD-16-I19]">
      <seq>tattttcttaacaaattacagagagtaattttcaaataaacttttgttattttgtgagtctttagagttagtcaagtacaaatggctacctccatctcaaccattggagctgtcaacaagttgagtttgaacaactctgttgttggaacttcagttccaccaacagccttctttggcaaaaccttaaagaaagtgaacaacaaagtttccagcacaaacatctcaaacaagaacttgaggctggttgctcaagaaaaagaaattgatgagaagaaacagactgatggggacagatggaagggacttgttaacgatgtgtccgatgatcaacaagacattgcaaggggtaaaggtttggttgattcgcttttccaggctccaacgggtactggtactcaccacgccatcatgaattcctatgaatacctcagccaaggtcttcgccaatataacttggacaacaagttggacggattctacatcgctcctgctttcatggacaagcttgttgttcacatcaccaagaacttcttaacgttgcccaacatcaaggttccacttattttgggtgtttggggaggaaaaggtcaaggtaaatcattccaatgtgagcttgtcttcagaaagatgggaatcaancccattatgatgagtgctggagaatttagaagtggaaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="41228" stop="43949"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41528" g_stop="41647" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41648" i_stop="42297" i_length="650">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42298" g_stop="42623" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="446" r_length="326" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42624" i_stop="42762" i_length="139">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42763" g_stop="42868" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="552" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42869" i_stop="42957" i_length="89">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42958" g_stop="43043" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="553" r_stop="638" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43044" i_stop="43607" i_length="564">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43608" g_stop="43649" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="639" r_stop="680" r_length="42" r_score="0.881"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E332069" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332069" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41528" e_stop="41647"/>
          <exon e_start="42298" e_stop="42623"/>
          <exon e_start="42763" e_stop="42868"/>
          <exon e_start="42958" e_stop="43043"/>
          <exon e_start="43608" e_stop="43649"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTTCTTAACAAATTACAGAGAGTAATTTTCAAATAAACTTTTGTTATTTTGTGAGTCTTTAGAGTTAGTCAAGTACAAATGGCTACCTCCATCTCAACCATTGGAGCTGTCAACAAGGTAATGGTACTGTGTTAAACACTTACTAATTGATCTTTTGGTGTGTGTAAAAAAATGAGAATTAGGAATGGGAGTCAATAGTTATTCGCTTTATACTAAATGAAATGAAGTATTTTCGGTATCTTTTTACTTTTTCTTAAAGTTGAACTCCAGAAAACACGTTTAACTATAAAATTTTAAAATTCAACTCATTTTCAATAAGTTGGAAAACAACAAAAGGCGTTTTCACTCCAAATTACTCGGAAATATCCAAAAACAACTTCAATTTTGTATTCATAATCTAACGCAATTTCCAACATTCAAATATCATTTTCTTTTTTAAAACAAAAACTATAATTGAAAAAATTCACACTTAAACATGGACGAACGCCTCTTAAACCGGATGATTTAAGAATGTTTTTTTGTTAAGATTTGATCATAGGCAAGGGCGGAGTCGCAATGTAAGTTATGAGTTCAGTAGAACACAGTAACTATTACTCAAACTTAATATTAGTGTTAAAAGAATTACTTAGTATGTATAAATATCTTATTGAGCAAAACAGATTATGGTTCAAAACTTATAAACTAAAAATTCTAACTCTGACACTCTGATAGAAAATAGACTATAGATTGTGTGGCTATTACTAAGTAAACATCTTTTTTTTATGCAGTTGAGTTTGAACAACTCTGTTGTTGGAACTTCAGTTCCACCAACAGCCTTCTTTGGCAAAACCTTAAAGAAAGTGAACAACAAAGTTTCCAGCACAAACATCTCAAACAAGAACTTGAGGCTGGTTGCTCAAGAAAAAGAAATTGATGAGAAGAAACAGACTGATGGGGACAGATGGAAGGGACTTGTTAACGATGTGTCCGATGATCAACAAGACATTGCAAGGGGTAAAGGTTTGGTTGATTCGCTTTTCCAGGCTCCAACGGGTACTGGTACTCACCACGCCATCATGAATTCCTATGAATACCTCAGCCAAGGTCTTCGCCAGTAAGTTGAACTGTGTGATCATCTTATCTAAAAGTTTATACTGCTGTTACAACTTGTATGATCATATTGTCTAAATGGTTAAGTTGTTAGAGAGAACACACTTTTATTTACTTGATTATATGTTTTGACATTCGATTAGATATAACTTGGACAACAAGTTGGACGGATTCTACATCGCTCCTGCTTTCATGGACAAGCTTGTTGTTCACATCACCAAGAACTTCTTAACGTTGCCCAACATCAAGGTCTGTTAAAGAGATGTTTGTTAAAAAATTCTGGCTTAAGTAGTGTTTTGTGTAAAAGAAGATTTGAACTTTGTTTATGTTTCTTACAGGTTCCACTTATTTTGGGTGTTTGGGGAGGAAAAGGTCAAGGTAAATCATTCCAATGTGAGCTTGTCTTCAGAAAGATGGGAATCAAGTGAGTATTGCCTTAAATTACATACTATCTTTATTCGGATTTTTTTTTCCGAGGAAATGGACTACAGTTACTTCTAAAACAATCTCTCTACCTACATGAGATAGGGATAAGGTCTCTATATATACGGTTCACCCTCTCCAAACCTCACTTGTGGGATTTAATTTCACTAAGAATGTTGTTGCTGTATATAGACTAAAGTTACTTTTGAAAGAACCTATCTTACCTTCACGAGATAGGGGTAAAATCTGCATACAGTTTACCCTCTCTAGACCCCACTTGTAGGATTTCACTGAGAATGTTATTGTTGTAAGTGGATTAAAGTCTTCCGAATCATCCTTTCTAGCTACCTCCACGAGGTAGGTGTAAGGTCTACGTATAGTCTACTCTCTCCAAACTCGAATTGTGGGATTTCACTGAAAGTTACTTTAGAAACAACCTCTCTACCTTCACGAGCTAGAGGTAAGATTTGCATACAATCTTACCTCTCCAGACCTCACTTGTGGGATTTCAATGAGAATGTTGTTGTAAAAGTTACTTACAATGTTTGGTTTATTAAACTTGCAGCCCAATTATGATGAGTGCTGGAGAATTAGAAAGTGGAAATGC</genome_strand>
        <mrna_strand>TATTTTCTTAACAAATTACAGAGAGTAATTTTCAAATAAACTTTTGTTATTTTGTGAGTCTTTAGAGTTAGTCAAGTACAAATGGCTACCTCCATCTCAACCATTGGAGCTGTCAACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGTTTGAACAACTCTGTTGTTGGAACTTCAGTTCCACCAACAGCCTTCTTTGGCAAAACCTTAAAGAAAGTGAACAACAAAGTTTCCAGCACAAACATCTCAAACAAGAACTTGAGGCTGGTTGCTCAAGAAAAAGAAATTGATGAGAAGAAACAGACTGATGGGGACAGATGGAAGGGACTTGTTAACGATGTGTCCGATGATCAACAAGACATTGCAAGGGGTAAAGGTTTGGTTGATTCGCTTTTCCAGGCTCCAACGGGTACTGGTACTCACCACGCCATCATGAATTCCTATGAATACCTCAGCCAAGGTCTTCGCCA...........................................................................................................................................ATATAACTTGGACAACAAGTTGGACGGATTCTACATCGCTCCTGCTTTCATGGACAAGCTTGTTGTTCACATCACCAAGAACTTCTTAACGTTGCCCAACATCAAG.........................................................................................GTTCCACTTATTTTGGGTGTTTGGGGAGGAAAAGGTCAAGGTAAATCATTCCAATGTGAGCTTGTCTTCAGAAAGATGGGAATCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................NCCCATTATGATGAGTGCTGGAGAATTTAGAAGTGGAAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E332106" ref_strand="+" ref_description="SGN-E332106 [cTOD-16-I20]">
      <seq>tattttcttaacaaattacagagagtaattttcaaataaacttttgttattttgtgagtctttagagttagtcaagtacaaatggctacctccatctcaaccattggagctgtcaacaagttgagtttgaacaactctgttgttggaacttcagttccaccaacagccttctttggcaaaaccttaaagaaagtgaacaacaaagtttccagcacaaacatctcaaacaagaacttgaggctggttgctcaagaaaaagaaattgatgagaagaaacagactgatggggacagatggaagggacttgttaacgatgtgtccgatgatcaacaagacattgcaaggggtaaaggtttggttgattcgcttttccaggctccaacgggtactggtactcaccacgccatcatgaattcctatgaatacctcagccaaggtcttcgccaatataacttggacaacaagttggacggattctacatcgctcctgctttcatggacaagcttgttgttcacatcaccaagaacttcttaacgttgcccaacatcaaggttccacttattttgggtgtttggggaggaaaaggtcaaggtaaatcattccaatgtgagcttgtcttcagaaagatgggaatcaancccattatgatgagtgctggagaattagaaagtggaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="41228" stop="43948"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41528" g_stop="41647" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41648" i_stop="42297" i_length="650">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42298" g_stop="42623" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="446" r_length="326" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42624" i_stop="42762" i_length="139">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42763" g_stop="42868" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="552" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42869" i_stop="42957" i_length="89">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42958" g_stop="43043" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="553" r_stop="638" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43044" i_stop="43607" i_length="564">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43608" g_stop="43648" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="639" r_stop="679" r_length="41" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E332106" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332106" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41528" e_stop="41647"/>
          <exon e_start="42298" e_stop="42623"/>
          <exon e_start="42763" e_stop="42868"/>
          <exon e_start="42958" e_stop="43043"/>
          <exon e_start="43608" e_stop="43648"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTTCTTAACAAATTACAGAGAGTAATTTTCAAATAAACTTTTGTTATTTTGTGAGTCTTTAGAGTTAGTCAAGTACAAATGGCTACCTCCATCTCAACCATTGGAGCTGTCAACAAGGTAATGGTACTGTGTTAAACACTTACTAATTGATCTTTTGGTGTGTGTAAAAAAATGAGAATTAGGAATGGGAGTCAATAGTTATTCGCTTTATACTAAATGAAATGAAGTATTTTCGGTATCTTTTTACTTTTTCTTAAAGTTGAACTCCAGAAAACACGTTTAACTATAAAATTTTAAAATTCAACTCATTTTCAATAAGTTGGAAAACAACAAAAGGCGTTTTCACTCCAAATTACTCGGAAATATCCAAAAACAACTTCAATTTTGTATTCATAATCTAACGCAATTTCCAACATTCAAATATCATTTTCTTTTTTAAAACAAAAACTATAATTGAAAAAATTCACACTTAAACATGGACGAACGCCTCTTAAACCGGATGATTTAAGAATGTTTTTTTGTTAAGATTTGATCATAGGCAAGGGCGGAGTCGCAATGTAAGTTATGAGTTCAGTAGAACACAGTAACTATTACTCAAACTTAATATTAGTGTTAAAAGAATTACTTAGTATGTATAAATATCTTATTGAGCAAAACAGATTATGGTTCAAAACTTATAAACTAAAAATTCTAACTCTGACACTCTGATAGAAAATAGACTATAGATTGTGTGGCTATTACTAAGTAAACATCTTTTTTTTATGCAGTTGAGTTTGAACAACTCTGTTGTTGGAACTTCAGTTCCACCAACAGCCTTCTTTGGCAAAACCTTAAAGAAAGTGAACAACAAAGTTTCCAGCACAAACATCTCAAACAAGAACTTGAGGCTGGTTGCTCAAGAAAAAGAAATTGATGAGAAGAAACAGACTGATGGGGACAGATGGAAGGGACTTGTTAACGATGTGTCCGATGATCAACAAGACATTGCAAGGGGTAAAGGTTTGGTTGATTCGCTTTTCCAGGCTCCAACGGGTACTGGTACTCACCACGCCATCATGAATTCCTATGAATACCTCAGCCAAGGTCTTCGCCAGTAAGTTGAACTGTGTGATCATCTTATCTAAAAGTTTATACTGCTGTTACAACTTGTATGATCATATTGTCTAAATGGTTAAGTTGTTAGAGAGAACACACTTTTATTTACTTGATTATATGTTTTGACATTCGATTAGATATAACTTGGACAACAAGTTGGACGGATTCTACATCGCTCCTGCTTTCATGGACAAGCTTGTTGTTCACATCACCAAGAACTTCTTAACGTTGCCCAACATCAAGGTCTGTTAAAGAGATGTTTGTTAAAAAATTCTGGCTTAAGTAGTGTTTTGTGTAAAAGAAGATTTGAACTTTGTTTATGTTTCTTACAGGTTCCACTTATTTTGGGTGTTTGGGGAGGAAAAGGTCAAGGTAAATCATTCCAATGTGAGCTTGTCTTCAGAAAGATGGGAATCAAGTGAGTATTGCCTTAAATTACATACTATCTTTATTCGGATTTTTTTTTCCGAGGAAATGGACTACAGTTACTTCTAAAACAATCTCTCTACCTACATGAGATAGGGATAAGGTCTCTATATATACGGTTCACCCTCTCCAAACCTCACTTGTGGGATTTAATTTCACTAAGAATGTTGTTGCTGTATATAGACTAAAGTTACTTTTGAAAGAACCTATCTTACCTTCACGAGATAGGGGTAAAATCTGCATACAGTTTACCCTCTCTAGACCCCACTTGTAGGATTTCACTGAGAATGTTATTGTTGTAAGTGGATTAAAGTCTTCCGAATCATCCTTTCTAGCTACCTCCACGAGGTAGGTGTAAGGTCTACGTATAGTCTACTCTCTCCAAACTCGAATTGTGGGATTTCACTGAAAGTTACTTTAGAAACAACCTCTCTACCTTCACGAGCTAGAGGTAAGATTTGCATACAATCTTACCTCTCCAGACCTCACTTGTGGGATTTCAATGAGAATGTTGTTGTAAAAGTTACTTACAATGTTTGGTTTATTAAACTTGCAGCCCAATTATGATGAGTGCTGGAGAATTAGAAAGTGGAAATG</genome_strand>
        <mrna_strand>TATTTTCTTAACAAATTACAGAGAGTAATTTTCAAATAAACTTTTGTTATTTTGTGAGTCTTTAGAGTTAGTCAAGTACAAATGGCTACCTCCATCTCAACCATTGGAGCTGTCAACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGTTTGAACAACTCTGTTGTTGGAACTTCAGTTCCACCAACAGCCTTCTTTGGCAAAACCTTAAAGAAAGTGAACAACAAAGTTTCCAGCACAAACATCTCAAACAAGAACTTGAGGCTGGTTGCTCAAGAAAAAGAAATTGATGAGAAGAAACAGACTGATGGGGACAGATGGAAGGGACTTGTTAACGATGTGTCCGATGATCAACAAGACATTGCAAGGGGTAAAGGTTTGGTTGATTCGCTTTTCCAGGCTCCAACGGGTACTGGTACTCACCACGCCATCATGAATTCCTATGAATACCTCAGCCAAGGTCTTCGCCA...........................................................................................................................................ATATAACTTGGACAACAAGTTGGACGGATTCTACATCGCTCCTGCTTTCATGGACAAGCTTGTTGTTCACATCACCAAGAACTTCTTAACGTTGCCCAACATCAAG.........................................................................................GTTCCACTTATTTTGGGTGTTTGGGGAGGAAAAGGTCAAGGTAAATCATTCCAATGTGAGCTTGTCTTCAGAAAGATGGGAATCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................NCCCATTATGATGAGTGCTGGAGAATTAGAAAGTGGAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E333102" ref_strand="+" ref_description="SGN-E333102 [cTOD-19-D13]">
      <seq>tattttcttaacaaattacagagagtaattttcaaataaacttttgttattttgtgagtctttatagttactcaagtacaaatggctacctccatctcaaccattggagctgtcaacaagttgagtttgaacaactctgttgttggaacttcagttccaccaacagccttctttggcaaaaccttatagaaagtgaacaacgaagattccatcacaaacatctcagacaagaacttgacgctggttgctcaagaaaaagaaattgatgataagaaacagactgatggggacagatggaagggacttgttaacgatgtgtccgatgatcaacaagacattgcaaggcgtaaaggcttggatgattcgctttctcaggctccaacgggtactggtactcaccacgccatcatgaattcctatgaatacctcagccgatgtcttcgccaatataac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="41228" stop="42926"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41528" g_stop="41647" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41648" i_stop="42297" i_length="650">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42298" g_stop="42623" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="446" r_length="326" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42624" i_stop="42762" i_length="139">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42763" g_stop="42769" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="453" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E333102" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333102" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41528" e_stop="41647"/>
          <exon e_start="42298" e_stop="42623"/>
          <exon e_start="42763" e_stop="42769"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTTCTTAACAAATTACAGAGAGTAATTTTCAAATAAACTTTTGTTATTTTGTGAGTCTTTAGAGTTAGTCAAGTACAAATGGCTACCTCCATCTCAACCATTGGAGCTGTCAACAAGGTAATGGTACTGTGTTAAACACTTACTAATTGATCTTTTGGTGTGTGTAAAAAAATGAGAATTAGGAATGGGAGTCAATAGTTATTCGCTTTATACTAAATGAAATGAAGTATTTTCGGTATCTTTTTACTTTTTCTTAAAGTTGAACTCCAGAAAACACGTTTAACTATAAAATTTTAAAATTCAACTCATTTTCAATAAGTTGGAAAACAACAAAAGGCGTTTTCACTCCAAATTACTCGGAAATATCCAAAAACAACTTCAATTTTGTATTCATAATCTAACGCAATTTCCAACATTCAAATATCATTTTCTTTTTTAAAACAAAAACTATAATTGAAAAAATTCACACTTAAACATGGACGAACGCCTCTTAAACCGGATGATTTAAGAATGTTTTTTTGTTAAGATTTGATCATAGGCAAGGGCGGAGTCGCAATGTAAGTTATGAGTTCAGTAGAACACAGTAACTATTACTCAAACTTAATATTAGTGTTAAAAGAATTACTTAGTATGTATAAATATCTTATTGAGCAAAACAGATTATGGTTCAAAACTTATAAACTAAAAATTCTAACTCTGACACTCTGATAGAAAATAGACTATAGATTGTGTGGCTATTACTAAGTAAACATCTTTTTTTTATGCAGTTGAGTTTGAACAACTCTGTTGTTGGAACTTCAGTTCCACCAACAGCCTTCTTTGGCAAAACCTTAAAGAAAGTGAACAACAAAGTTTCCAGCACAAACATCTCAAACAAGAACTTGAGGCTGGTTGCTCAAGAAAAAGAAATTGATGAGAAGAAACAGACTGATGGGGACAGATGGAAGGGACTTGTTAACGATGTGTCCGATGATCAACAAGACATTGCAAGGGGTAAAGGTTTGGTTGATTCGCTTTTCCAGGCTCCAACGGGTACTGGTACTCACCACGCCATCATGAATTCCTATGAATACCTCAGCCAAGGTCTTCGCCAGTAAGTTGAACTGTGTGATCATCTTATCTAAAAGTTTATACTGCTGTTACAACTTGTATGATCATATTGTCTAAATGGTTAAGTTGTTAGAGAGAACACACTTTTATTTACTTGATTATATGTTTTGACATTCGATTAGATATAAC</genome_strand>
        <mrna_strand>TATTTTCTTAACAAATTACAGAGAGTAATTTTCAAATAAACTTTTGTTATTTTGTGAGTCTTTATAGTTACTCAAGTACAAATGGCTACCTCCATCTCAACCATTGGAGCTGTCAACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGTTTGAACAACTCTGTTGTTGGAACTTCAGTTCCACCAACAGCCTTCTTTGGCAAAACCTTATAGAAAGTGAACAACGAAGATTCCATCACAAACATCTCAGACAAGAACTTGACGCTGGTTGCTCAAGAAAAAGAAATTGATGATAAGAAACAGACTGATGGGGACAGATGGAAGGGACTTGTTAACGATGTGTCCGATGATCAACAAGACATTGCAAGGCGTAAAGGCTTGGATGATTCGCTTTCTCAGGCTCCAACGGGTACTGGTACTCACCACGCCATCATGAATTCCTATGAATACCTCAGCCGATGTCTTCGCCA...........................................................................................................................................ATATAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E746540" ref_strand="+" ref_description="SGN-E746540 [GI|47104210]">
      <seq>ttttcttaacaaattacagagagtaattttcaaataaacttttgttattttgtgagtctttagagttagtcaagtacaaatggctacctccatctcaaccattggagctgtcaacaagttgagtttgaacaactctgttgttggaacttcagttccaccaacagccttctttggcaaaaccttaaagaaagtgaacaacaaagtttccagcacaaacatctcaaacaagaacttgaggctggttgctcaagaaaaagaaattgatgagaagaaacagactgatggggacagatggaagggacttgttaacgatgtgtccgatgatcaacaagacattgcaaggggtaaaggtttggttgattcgcttttccaggctccaacgggtactggtactcaccacgccatcatgaattcctatgaatacctcagccaaggtcttcgccaatataacttggacaacaagttggacggattctacatcgctcctgctttcatggacaagcttgttgttcacatcaccaagaacttcttaacgttgcccaacatcaaggttccacttattttgggtgtttggggaggaaaaggtcaaggtaaatcattccaatgtgagcttgtcttcagaaagatgggaatcaacccaattatgatgagtgctggagaattagaaagtggaaatgcaggagagccagctaaattgatcaggcaaaggtacagagaggccgcggaaatcatcaggaagggaaacatgtgttgcctcttcatcaacgatcttgatgcaggagccggtagaatgggtggaactacacaatacactgtcaacaaccaaatggtgaatgctacactcatgaacattgctgataacccgacgaatgtccaactccccggtatgtacaacaagcaagagaatgccagggtacctattattgtcactggtaacgatttctccacattgtatgcacctcttatccgtgatggtcgtatggagaaattctactgggcaccaactagagaagacagaattggtgtttgcaaaggtattttcaggactgacagagttcctgatgatgacattgtcaagatcgtcgatagcttccctggacaatctattgatttcttcggtgctctgagggcgagagtatacgatgatgaagtgaggaaatggattggaagtactggaattgaacaaattggagagaaacttttgaactcaagggatggaccaccaacatttgagcaaccaaagatgactatcgataagctcctcgagtacggcaacatgcttgttcaagagcaagagaatgttaagagagttcagttagctgacaagtaccttaaagaagctgcacttggtgatgcaaatgctgattccatcaacaatggatccttctttgctagctagacattttcgtcaatttaatcagttctgtttttttgcatcatttttgtcatgatattgtaatgatcttcgtgtgatgattgtattagtgaatataagtttgatcttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="41230" stop="44858"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41530" g_stop="41647" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41648" i_stop="42297" i_length="650">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42298" g_stop="42623" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="444" r_length="326" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42624" i_stop="42762" i_length="139">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42763" g_stop="42868" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="550" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42869" i_stop="42957" i_length="89">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42958" g_stop="43043" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="636" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43044" i_stop="43607" i_length="564">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43608" g_stop="44080" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="637" r_stop="1109" r_length="473" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="44081" i_stop="44160" i_length="80">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="44161" g_stop="44555" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="1110" r_stop="1504" r_length="395" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1505" polyA_stop="1519"/>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E746540" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1504</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41530" e_stop="41647"/>
          <exon e_start="42298" e_stop="42623"/>
          <exon e_start="42763" e_stop="42868"/>
          <exon e_start="42958" e_stop="43043"/>
          <exon e_start="43608" e_stop="44080"/>
          <exon e_start="44161" e_stop="44555"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTTAACAAATTACAGAGAGTAATTTTCAAATAAACTTTTGTTATTTTGTGAGTCTTTAGAGTTAGTCAAGTACAAATGGCTACCTCCATCTCAACCATTGGAGCTGTCAACAAGGTAATGGTACTGTGTTAAACACTTACTAATTGATCTTTTGGTGTGTGTAAAAAAATGAGAATTAGGAATGGGAGTCAATAGTTATTCGCTTTATACTAAATGAAATGAAGTATTTTCGGTATCTTTTTACTTTTTCTTAAAGTTGAACTCCAGAAAACACGTTTAACTATAAAATTTTAAAATTCAACTCATTTTCAATAAGTTGGAAAACAACAAAAGGCGTTTTCACTCCAAATTACTCGGAAATATCCAAAAACAACTTCAATTTTGTATTCATAATCTAACGCAATTTCCAACATTCAAATATCATTTTCTTTTTTAAAACAAAAACTATAATTGAAAAAATTCACACTTAAACATGGACGAACGCCTCTTAAACCGGATGATTTAAGAATGTTTTTTTGTTAAGATTTGATCATAGGCAAGGGCGGAGTCGCAATGTAAGTTATGAGTTCAGTAGAACACAGTAACTATTACTCAAACTTAATATTAGTGTTAAAAGAATTACTTAGTATGTATAAATATCTTATTGAGCAAAACAGATTATGGTTCAAAACTTATAAACTAAAAATTCTAACTCTGACACTCTGATAGAAAATAGACTATAGATTGTGTGGCTATTACTAAGTAAACATCTTTTTTTTATGCAGTTGAGTTTGAACAACTCTGTTGTTGGAACTTCAGTTCCACCAACAGCCTTCTTTGGCAAAACCTTAAAGAAAGTGAACAACAAAGTTTCCAGCACAAACATCTCAAACAAGAACTTGAGGCTGGTTGCTCAAGAAAAAGAAATTGATGAGAAGAAACAGACTGATGGGGACAGATGGAAGGGACTTGTTAACGATGTGTCCGATGATCAACAAGACATTGCAAGGGGTAAAGGTTTGGTTGATTCGCTTTTCCAGGCTCCAACGGGTACTGGTACTCACCACGCCATCATGAATTCCTATGAATACCTCAGCCAAGGTCTTCGCCAGTAAGTTGAACTGTGTGATCATCTTATCTAAAAGTTTATACTGCTGTTACAACTTGTATGATCATATTGTCTAAATGGTTAAGTTGTTAGAGAGAACACACTTTTATTTACTTGATTATATGTTTTGACATTCGATTAGATATAACTTGGACAACAAGTTGGACGGATTCTACATCGCTCCTGCTTTCATGGACAAGCTTGTTGTTCACATCACCAAGAACTTCTTAACGTTGCCCAACATCAAGGTCTGTTAAAGAGATGTTTGTTAAAAAATTCTGGCTTAAGTAGTGTTTTGTGTAAAAGAAGATTTGAACTTTGTTTATGTTTCTTACAGGTTCCACTTATTTTGGGTGTTTGGGGAGGAAAAGGTCAAGGTAAATCATTCCAATGTGAGCTTGTCTTCAGAAAGATGGGAATCAAGTGAGTATTGCCTTAAATTACATACTATCTTTATTCGGATTTTTTTTTCCGAGGAAATGGACTACAGTTACTTCTAAAACAATCTCTCTACCTACATGAGATAGGGATAAGGTCTCTATATATACGGTTCACCCTCTCCAAACCTCACTTGTGGGATTTAATTTCACTAAGAATGTTGTTGCTGTATATAGACTAAAGTTACTTTTGAAAGAACCTATCTTACCTTCACGAGATAGGGGTAAAATCTGCATACAGTTTACCCTCTCTAGACCCCACTTGTAGGATTTCACTGAGAATGTTATTGTTGTAAGTGGATTAAAGTCTTCCGAATCATCCTTTCTAGCTACCTCCACGAGGTAGGTGTAAGGTCTACGTATAGTCTACTCTCTCCAAACTCGAATTGTGGGATTTCACTGAAAGTTACTTTAGAAACAACCTCTCTACCTTCACGAGCTAGAGGTAAGATTTGCATACAATCTTACCTCTCCAGACCTCACTTGTGGGATTTCAATGAGAATGTTGTTGTAAAAGTTACTTACAATGTTTGGTTTATTAAACTTGCAGCCCAATTATGATGAGTGCTGGAGAATTAGAAAGTGGAAATGCAGGAGAGCCAGCTAAATTGATCAGGCAAAGGTACAGAGAGGCCGCGGAAATCATCAGGAAGGGAAACATGTGTTGCCTCTTCATCAACGATCTTGATGCAGGAGCCGGTAGAATGGGTGGAACTACACAATACACTGTCAACAACCAAATGGTGAATGCTACACTCATGAACATTGCTGATAACCCGACGAATGTCCAACTCCCCGGTATGTACAACAAGCAAGAGAATGCCAGGGTACCTATTATTGTCACTGGTAACGATTTCTCCACATTGTATGCACCTCTTATCCGTGATGGTCGTATGGAGAAATTCTACTGGGCACCAACTAGAGAAGACAGAATTGGTGTTTGCAAAGGTATTTTCAGGACTGACAGAGTTCCTGATGATGACATTGTCAAGATCGTCGATAGCTTCCCTGGACAATCTATTGGTAAGGAGACTAATAATATTTAACTTGTGTTAAAGATGAATAATAATATCAATGATCATATCTGAGTGGATCTTAAACAGATTTCTTCGGTGCTCTGAGGGCGAGAGTATACGATGATGAAGTGAGGAAATGGATTGGAAGTACTGGAATTGAACAAATTGGAGAGAAACTTTTGAACTCAAGGGATGGACCACCAACATTTGAGCAACCAAAGATGACTATCGATAAGCTCCTCGAGTACGGCAACATGCTTGTTCAAGAGCAAGAGAATGTTAAGAGAGTTCAGTTAGCTGACAAGTACCTTAAAGAAGCTGCACTTGGTGATGCAAATGCTGATTCCATCAACAATGGATCCTTCTTTGCTAGCTAGACATTTTCGTCAATTTAATCAGTTCTGTTTTTTTGCATCATTTTTGTCATGATATTGTAATGATCTTCGTGTGATGATTGTATTAGTGAATATAAGTTTGATCTT</genome_strand>
        <mrna_strand>TTTTCTTAACAAATTACAGAGAGTAATTTTCAAATAAACTTTTGTTATTTTGTGAGTCTTTAGAGTTAGTCAAGTACAAATGGCTACCTCCATCTCAACCATTGGAGCTGTCAACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGTTTGAACAACTCTGTTGTTGGAACTTCAGTTCCACCAACAGCCTTCTTTGGCAAAACCTTAAAGAAAGTGAACAACAAAGTTTCCAGCACAAACATCTCAAACAAGAACTTGAGGCTGGTTGCTCAAGAAAAAGAAATTGATGAGAAGAAACAGACTGATGGGGACAGATGGAAGGGACTTGTTAACGATGTGTCCGATGATCAACAAGACATTGCAAGGGGTAAAGGTTTGGTTGATTCGCTTTTCCAGGCTCCAACGGGTACTGGTACTCACCACGCCATCATGAATTCCTATGAATACCTCAGCCAAGGTCTTCGCCA...........................................................................................................................................ATATAACTTGGACAACAAGTTGGACGGATTCTACATCGCTCCTGCTTTCATGGACAAGCTTGTTGTTCACATCACCAAGAACTTCTTAACGTTGCCCAACATCAAG.........................................................................................GTTCCACTTATTTTGGGTGTTTGGGGAGGAAAAGGTCAAGGTAAATCATTCCAATGTGAGCTTGTCTTCAGAAAGATGGGAATCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAATTATGATGAGTGCTGGAGAATTAGAAAGTGGAAATGCAGGAGAGCCAGCTAAATTGATCAGGCAAAGGTACAGAGAGGCCGCGGAAATCATCAGGAAGGGAAACATGTGTTGCCTCTTCATCAACGATCTTGATGCAGGAGCCGGTAGAATGGGTGGAACTACACAATACACTGTCAACAACCAAATGGTGAATGCTACACTCATGAACATTGCTGATAACCCGACGAATGTCCAACTCCCCGGTATGTACAACAAGCAAGAGAATGCCAGGGTACCTATTATTGTCACTGGTAACGATTTCTCCACATTGTATGCACCTCTTATCCGTGATGGTCGTATGGAGAAATTCTACTGGGCACCAACTAGAGAAGACAGAATTGGTGTTTGCAAAGGTATTTTCAGGACTGACAGAGTTCCTGATGATGACATTGTCAAGATCGTCGATAGCTTCCCTGGACAATCTATTG................................................................................ATTTCTTCGGTGCTCTGAGGGCGAGAGTATACGATGATGAAGTGAGGAAATGGATTGGAAGTACTGGAATTGAACAAATTGGAGAGAAACTTTTGAACTCAAGGGATGGACCACCAACATTTGAGCAACCAAAGATGACTATCGATAAGCTCCTCGAGTACGGCAACATGCTTGTTCAAGAGCAAGAGAATGTTAAGAGAGTTCAGTTAGCTGACAAGTACCTTAAAGAAGCTGCACTTGGTGATGCAAATGCTGATTCCATCAACAATGGATCCTTCTTTGCTAGCTAGACATTTTCGTCAATTTAATCAGTTCTGTTTTTTTGCATCATTTTTGTCATGATATTGTAATGATCTTCGTGTGATGATTGTATTAGTGAATATAAGTTTGATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E332586" ref_strand="+" ref_description="SGN-E332586 [cTOD-18-I10]">
      <seq>ttttcttaacaaattacagagagtaattttcaaataaacttttgttattttgtgagtctttagagttagtcaagtacaaatggctacctccatctcaaccattggagctgtcaacaagttgagtttgaacaactctgttgttggaacttcagttccaccaacagccttctttggcaaaaccttaaagaaagtgaacaacaaagtttccagcacaaacatctcaaacaagaacttgaggctggttgctcaagaaaaagaaattgatgagaagaaacagactgatggggacagatggaagggacttgttaacgatgtgtccgatgatcaacaagacattgcaaggggtaaaggtttggttgattcgcttttccaggctccaacgggtactggtactcaccacgccatcatgaattcctatgaatacctcagccaaggtcttcgccaatataacttggacaacaagttggacggattctacatcgctcctgctttcatggacaagcttgttgttcacatcaccaagaacttcttaacgttgcccaacatcaaggttccacttattttgggtgtttggggaggaaaaggtcaaggtaaatcattccaatgtgagcttgtcttcagaaagatgggaatcaaccccattatgatgagtgctggagaattagaaagtggaaatgcaggagagccagctaaattgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="41230" stop="43970"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41530" g_stop="41647" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41648" i_stop="42297" i_length="650">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42298" g_stop="42623" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="444" r_length="326" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42624" i_stop="42762" i_length="139">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42763" g_stop="42868" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="550" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42869" i_stop="42957" i_length="89">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42958" g_stop="43043" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="636" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43044" i_stop="43607" i_length="564">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43608" g_stop="43670" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="637" r_stop="699" r_length="63" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E332586" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332586" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41530" e_stop="41647"/>
          <exon e_start="42298" e_stop="42623"/>
          <exon e_start="42763" e_stop="42868"/>
          <exon e_start="42958" e_stop="43043"/>
          <exon e_start="43608" e_stop="43670"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTTAACAAATTACAGAGAGTAATTTTCAAATAAACTTTTGTTATTTTGTGAGTCTTTAGAGTTAGTCAAGTACAAATGGCTACCTCCATCTCAACCATTGGAGCTGTCAACAAGGTAATGGTACTGTGTTAAACACTTACTAATTGATCTTTTGGTGTGTGTAAAAAAATGAGAATTAGGAATGGGAGTCAATAGTTATTCGCTTTATACTAAATGAAATGAAGTATTTTCGGTATCTTTTTACTTTTTCTTAAAGTTGAACTCCAGAAAACACGTTTAACTATAAAATTTTAAAATTCAACTCATTTTCAATAAGTTGGAAAACAACAAAAGGCGTTTTCACTCCAAATTACTCGGAAATATCCAAAAACAACTTCAATTTTGTATTCATAATCTAACGCAATTTCCAACATTCAAATATCATTTTCTTTTTTAAAACAAAAACTATAATTGAAAAAATTCACACTTAAACATGGACGAACGCCTCTTAAACCGGATGATTTAAGAATGTTTTTTTGTTAAGATTTGATCATAGGCAAGGGCGGAGTCGCAATGTAAGTTATGAGTTCAGTAGAACACAGTAACTATTACTCAAACTTAATATTAGTGTTAAAAGAATTACTTAGTATGTATAAATATCTTATTGAGCAAAACAGATTATGGTTCAAAACTTATAAACTAAAAATTCTAACTCTGACACTCTGATAGAAAATAGACTATAGATTGTGTGGCTATTACTAAGTAAACATCTTTTTTTTATGCAGTTGAGTTTGAACAACTCTGTTGTTGGAACTTCAGTTCCACCAACAGCCTTCTTTGGCAAAACCTTAAAGAAAGTGAACAACAAAGTTTCCAGCACAAACATCTCAAACAAGAACTTGAGGCTGGTTGCTCAAGAAAAAGAAATTGATGAGAAGAAACAGACTGATGGGGACAGATGGAAGGGACTTGTTAACGATGTGTCCGATGATCAACAAGACATTGCAAGGGGTAAAGGTTTGGTTGATTCGCTTTTCCAGGCTCCAACGGGTACTGGTACTCACCACGCCATCATGAATTCCTATGAATACCTCAGCCAAGGTCTTCGCCAGTAAGTTGAACTGTGTGATCATCTTATCTAAAAGTTTATACTGCTGTTACAACTTGTATGATCATATTGTCTAAATGGTTAAGTTGTTAGAGAGAACACACTTTTATTTACTTGATTATATGTTTTGACATTCGATTAGATATAACTTGGACAACAAGTTGGACGGATTCTACATCGCTCCTGCTTTCATGGACAAGCTTGTTGTTCACATCACCAAGAACTTCTTAACGTTGCCCAACATCAAGGTCTGTTAAAGAGATGTTTGTTAAAAAATTCTGGCTTAAGTAGTGTTTTGTGTAAAAGAAGATTTGAACTTTGTTTATGTTTCTTACAGGTTCCACTTATTTTGGGTGTTTGGGGAGGAAAAGGTCAAGGTAAATCATTCCAATGTGAGCTTGTCTTCAGAAAGATGGGAATCAAGTGAGTATTGCCTTAAATTACATACTATCTTTATTCGGATTTTTTTTTCCGAGGAAATGGACTACAGTTACTTCTAAAACAATCTCTCTACCTACATGAGATAGGGATAAGGTCTCTATATATACGGTTCACCCTCTCCAAACCTCACTTGTGGGATTTAATTTCACTAAGAATGTTGTTGCTGTATATAGACTAAAGTTACTTTTGAAAGAACCTATCTTACCTTCACGAGATAGGGGTAAAATCTGCATACAGTTTACCCTCTCTAGACCCCACTTGTAGGATTTCACTGAGAATGTTATTGTTGTAAGTGGATTAAAGTCTTCCGAATCATCCTTTCTAGCTACCTCCACGAGGTAGGTGTAAGGTCTACGTATAGTCTACTCTCTCCAAACTCGAATTGTGGGATTTCACTGAAAGTTACTTTAGAAACAACCTCTCTACCTTCACGAGCTAGAGGTAAGATTTGCATACAATCTTACCTCTCCAGACCTCACTTGTGGGATTTCAATGAGAATGTTGTTGTAAAAGTTACTTACAATGTTTGGTTTATTAAACTTGCAGCCCAATTATGATGAGTGCTGGAGAATTAGAAAGTGGAAATGCAGGAGAGCCAGCTAAATTGAT</genome_strand>
        <mrna_strand>TTTTCTTAACAAATTACAGAGAGTAATTTTCAAATAAACTTTTGTTATTTTGTGAGTCTTTAGAGTTAGTCAAGTACAAATGGCTACCTCCATCTCAACCATTGGAGCTGTCAACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGTTTGAACAACTCTGTTGTTGGAACTTCAGTTCCACCAACAGCCTTCTTTGGCAAAACCTTAAAGAAAGTGAACAACAAAGTTTCCAGCACAAACATCTCAAACAAGAACTTGAGGCTGGTTGCTCAAGAAAAAGAAATTGATGAGAAGAAACAGACTGATGGGGACAGATGGAAGGGACTTGTTAACGATGTGTCCGATGATCAACAAGACATTGCAAGGGGTAAAGGTTTGGTTGATTCGCTTTTCCAGGCTCCAACGGGTACTGGTACTCACCACGCCATCATGAATTCCTATGAATACCTCAGCCAAGGTCTTCGCCA...........................................................................................................................................ATATAACTTGGACAACAAGTTGGACGGATTCTACATCGCTCCTGCTTTCATGGACAAGCTTGTTGTTCACATCACCAAGAACTTCTTAACGTTGCCCAACATCAAG.........................................................................................GTTCCACTTATTTTGGGTGTTTGGGGAGGAAAAGGTCAAGGTAAATCATTCCAATGTGAGCTTGTCTTCAGAAAGATGGGAATCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCATTATGATGAGTGCTGGAGAATTAGAAAGTGGAAATGCAGGAGAGCCAGCTAAATTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E333566" ref_strand="+" ref_description="SGN-E333566 [cTOD-22-E2]">
      <seq>ttttcttaacaaattacagagagtaattttcaaataaacttttgttattttgtgagtctttagagttagtcaagtacaaatggctacctccatctcaaccattggagctgtcaacaagttgagtttgaacaactctgttgttggaacttcagttccaccaacagccttctttggcaaaaccttaaagaaagtgaacaacaaagtttccagcacaaacatctcaaacaagaacttgaggctggttgctcaagaaaaagaaattgatgagaagaaacagactgatggggacagatggaagggacttgttaacgatgtgtccgatgatcaacaagacattgcaaggggtaaaggtttggttgattcgcttttccaggctccaacgggtactggtactcaccacgccatcatgaattcctatgaatacctcagccaaggtcttcgccaatataacttggacaacaagttggacggattctacatcgctcctgctttcatggacaagcttgttgttcacatcaccaagaacttcttaacgttgcccaaacatcaagtttcacttatttttggtgtttggggaagaaaaaggtcaggtaaatcattccaatgtgagcttgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="41230" stop="43323"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41530" g_stop="41647" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41648" i_stop="42297" i_length="650">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42298" g_stop="42623" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="444" r_length="326" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42624" i_stop="42762" i_length="139">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42763" g_stop="42868" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="550" r_length="106" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42869" i_stop="42957" i_length="89">
            <donor d_prob="0.983" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42958" g_stop="43023" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="616" r_length="66" r_score="0.894"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E333566" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333566" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41530" e_stop="41647"/>
          <exon e_start="42298" e_stop="42623"/>
          <exon e_start="42763" e_stop="42868"/>
          <exon e_start="42958" e_stop="43023"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTTAACAAATTACAGAGAGTAATTTTCAAATAAACTTTTGTTATTTTGTGAGTCTTTAGAGTTAGTCAAGTACAAATGGCTACCTCCATCTCAACCATTGGAGCTGTCAACAAGGTAATGGTACTGTGTTAAACACTTACTAATTGATCTTTTGGTGTGTGTAAAAAAATGAGAATTAGGAATGGGAGTCAATAGTTATTCGCTTTATACTAAATGAAATGAAGTATTTTCGGTATCTTTTTACTTTTTCTTAAAGTTGAACTCCAGAAAACACGTTTAACTATAAAATTTTAAAATTCAACTCATTTTCAATAAGTTGGAAAACAACAAAAGGCGTTTTCACTCCAAATTACTCGGAAATATCCAAAAACAACTTCAATTTTGTATTCATAATCTAACGCAATTTCCAACATTCAAATATCATTTTCTTTTTTAAAACAAAAACTATAATTGAAAAAATTCACACTTAAACATGGACGAACGCCTCTTAAACCGGATGATTTAAGAATGTTTTTTTGTTAAGATTTGATCATAGGCAAGGGCGGAGTCGCAATGTAAGTTATGAGTTCAGTAGAACACAGTAACTATTACTCAAACTTAATATTAGTGTTAAAAGAATTACTTAGTATGTATAAATATCTTATTGAGCAAAACAGATTATGGTTCAAAACTTATAAACTAAAAATTCTAACTCTGACACTCTGATAGAAAATAGACTATAGATTGTGTGGCTATTACTAAGTAAACATCTTTTTTTTATGCAGTTGAGTTTGAACAACTCTGTTGTTGGAACTTCAGTTCCACCAACAGCCTTCTTTGGCAAAACCTTAAAGAAAGTGAACAACAAAGTTTCCAGCACAAACATCTCAAACAAGAACTTGAGGCTGGTTGCTCAAGAAAAAGAAATTGATGAGAAGAAACAGACTGATGGGGACAGATGGAAGGGACTTGTTAACGATGTGTCCGATGATCAACAAGACATTGCAAGGGGTAAAGGTTTGGTTGATTCGCTTTTCCAGGCTCCAACGGGTACTGGTACTCACCACGCCATCATGAATTCCTATGAATACCTCAGCCAAGGTCTTCGCCAGTAAGTTGAACTGTGTGATCATCTTATCTAAAAGTTTATACTGCTGTTACAACTTGTATGATCATATTGTCTAAATGGTTAAGTTGTTAGAGAGAACACACTTTTATTTACTTGATTATATGTTTTGACATTCGATTAGATATAACTTGGACAACAAGTTGGACGGATTCTACATCGCTCCTGCTTTCATGGACAAGCTTGTTGTTCACATCACCAAGAACTTCTTAACGTTGCCC-AACATCAAGGTCTGTTAAAGAGATGTTTGTTAAAAAATTCTGGCTTAAGTAGTGTTTTGTGTAAAAGAAGATTTGAACTTTGTTTATGTTTCTTACAGGTTCCACTTATTTTGGGTGTTTGGGGAGGAAAAGGTCAAGGTAAATCATTCCAATGTGAGCTTGTC</genome_strand>
        <mrna_strand>TTTTCTTAACAAATTACAGAGAGTAATTTTCAAATAAACTTTTGTTATTTTGTGAGTCTTTAGAGTTAGTCAAGTACAAATGGCTACCTCCATCTCAACCATTGGAGCTGTCAACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGTTTGAACAACTCTGTTGTTGGAACTTCAGTTCCACCAACAGCCTTCTTTGGCAAAACCTTAAAGAAAGTGAACAACAAAGTTTCCAGCACAAACATCTCAAACAAGAACTTGAGGCTGGTTGCTCAAGAAAAAGAAATTGATGAGAAGAAACAGACTGATGGGGACAGATGGAAGGGACTTGTTAACGATGTGTCCGATGATCAACAAGACATTGCAAGGGGTAAAGGTTTGGTTGATTCGCTTTTCCAGGCTCCAACGGGTACTGGTACTCACCACGCCATCATGAATTCCTATGAATACCTCAGCCAAGGTCTTCGCCA...........................................................................................................................................ATATAACTTGGACAACAAGTTGGACGGATTCTACATCGCTCCTGCTTTCATGGACAAGCTTGTTGTTCACATCACCAAGAACTTCTTAACGTTGCCCAAACATCAA-.........................................................................................GTTTCACTTATTTTTGGTGTTTGGGGAAGAAAAAGGTCAGGTAAATCATTCCAATGTGAGCTTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E366889" ref_strand="+" ref_description="SGN-E366889 [cLPT-6-A15]">
      <seq>tctatacaaattacagacagagtaattttcaactaaacttttattttttgtgaatctttagagttagtcaaatacaaatggctacctccatctcaaccattggagctgtcaacaagttgagtttgaacaactctgttgttggaacttcagttccaccaacagccttctttggtaaaaccttaaagaaagtgaacaacaaagtttccagcacaaacatcgcaaacaagaacttgaggattgttgctcaagaaaaagaaattgatgagaagaaacagactgatggggacagatggaagggacttgttaacgatgtgtccgatgatcaacaagacattgcaaggggtaaaggtttggttgattcggttttccaggctccaacgggtactggtactcaccacgccatcatgaattcctatgaatacctcagccaaggtcttcgccaatataacttggacaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="41245" stop="42934"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41533" g_stop="41647" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="0.904"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41648" i_stop="42297" i_length="650">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42298" g_stop="42623" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="442" r_length="326" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42624" i_stop="42762" i_length="139">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42763" g_stop="42778" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="458" r_length="16" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E366889" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366889" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41533" e_stop="41647"/>
          <exon e_start="42298" e_stop="42623"/>
          <exon e_start="42763" e_stop="42778"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTAACAAATTACAG--AGAGTAATTTTCAAATAAACTTTTGTTATTTTGTGAGTCTTTAGAGTTAGTCAAGTACAAATGGCTACCTCCATCTCAACCATTGGAGCTGTCAACAAGGTAATGGTACTGTGTTAAACACTTACTAATTGATCTTTTGGTGTGTGTAAAAAAATGAGAATTAGGAATGGGAGTCAATAGTTATTCGCTTTATACTAAATGAAATGAAGTATTTTCGGTATCTTTTTACTTTTTCTTAAAGTTGAACTCCAGAAAACACGTTTAACTATAAAATTTTAAAATTCAACTCATTTTCAATAAGTTGGAAAACAACAAAAGGCGTTTTCACTCCAAATTACTCGGAAATATCCAAAAACAACTTCAATTTTGTATTCATAATCTAACGCAATTTCCAACATTCAAATATCATTTTCTTTTTTAAAACAAAAACTATAATTGAAAAAATTCACACTTAAACATGGACGAACGCCTCTTAAACCGGATGATTTAAGAATGTTTTTTTGTTAAGATTTGATCATAGGCAAGGGCGGAGTCGCAATGTAAGTTATGAGTTCAGTAGAACACAGTAACTATTACTCAAACTTAATATTAGTGTTAAAAGAATTACTTAGTATGTATAAATATCTTATTGAGCAAAACAGATTATGGTTCAAAACTTATAAACTAAAAATTCTAACTCTGACACTCTGATAGAAAATAGACTATAGATTGTGTGGCTATTACTAAGTAAACATCTTTTTTTTATGCAGTTGAGTTTGAACAACTCTGTTGTTGGAACTTCAGTTCCACCAACAGCCTTCTTTGGCAAAACCTTAAAGAAAGTGAACAACAAAGTTTCCAGCACAAACATCTCAAACAAGAACTTGAGGCTGGTTGCTCAAGAAAAAGAAATTGATGAGAAGAAACAGACTGATGGGGACAGATGGAAGGGACTTGTTAACGATGTGTCCGATGATCAACAAGACATTGCAAGGGGTAAAGGTTTGGTTGATTCGCTTTTCCAGGCTCCAACGGGTACTGGTACTCACCACGCCATCATGAATTCCTATGAATACCTCAGCCAAGGTCTTCGCCAGTAAGTTGAACTGTGTGATCATCTTATCTAAAAGTTTATACTGCTGTTACAACTTGTATGATCATATTGTCTAAATGGTTAAGTTGTTAGAGAGAACACACTTTTATTTACTTGATTATATGTTTTGACATTCGATTAGATATAACTTGGACAAC</genome_strand>
        <mrna_strand>TCTATACAAATTACAGACAGAGTAATTTTCAACTAAACTTTTATT-TTTTGTGAATCTTTAGAGTTAGTCAAATACAAATGGCTACCTCCATCTCAACCATTGGAGCTGTCAACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGTTTGAACAACTCTGTTGTTGGAACTTCAGTTCCACCAACAGCCTTCTTTGGTAAAACCTTAAAGAAAGTGAACAACAAAGTTTCCAGCACAAACATCGCAAACAAGAACTTGAGGATTGTTGCTCAAGAAAAAGAAATTGATGAGAAGAAACAGACTGATGGGGACAGATGGAAGGGACTTGTTAACGATGTGTCCGATGATCAACAAGACATTGCAAGGGGTAAAGGTTTGGTTGATTCGGTTTTCCAGGCTCCAACGGGTACTGGTACTCACCACGCCATCATGAATTCCTATGAATACCTCAGCCAAGGTCTTCGCCA...........................................................................................................................................ATATAACTTGGACAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E296318" ref_strand="-" ref_description="SGN-E296318 [cLET-19-F23](-)">
      <seq>cttaacaaattacagagagtaattttcaaataaacttttgttattttgtgagtctttagagttagtcaagtacaaatggctacctccatctcaaccattggagctgtcaacaagttgagtttgaacaactctgttgttggaacttcagttccaccaacagccttctttggcaaaaccttaaagaaagtgaacaacaaagtttccagcacaaacatctcaaacaagaacttgaggctggttgctcaagaaaaagaaattgatgagaagaaacagactgatggggacagatggaagggacttgttaacgatgtgtccgatgatcaacaagacattgcaaggggtaaaggtttggttgattcgcttttccaggctccaacgggtactggtactcaccacgccatcatgaattcctatgaatacctcagccaaggtcttcgccaatataacttggacaacaagttggacggattctacatcgctcctgctttcatggacaagcttgttgttcacatcaccaagaacttcttaacgttgcccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="41234" stop="43161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41534" g_stop="41647" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41648" i_stop="42297" i_length="650">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42298" g_stop="42623" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="440" r_length="326" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42624" i_stop="42762" i_length="139">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42763" g_stop="42861" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="539" r_length="99" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E296318" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E296318" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="41534" e_stop="41647"/>
          <exon e_start="42298" e_stop="42623"/>
          <exon e_start="42763" e_stop="42861"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAACAAATTACAGAGAGTAATTTTCAAATAAACTTTTGTTATTTTGTGAGTCTTTAGAGTTAGTCAAGTACAAATGGCTACCTCCATCTCAACCATTGGAGCTGTCAACAAGGTAATGGTACTGTGTTAAACACTTACTAATTGATCTTTTGGTGTGTGTAAAAAAATGAGAATTAGGAATGGGAGTCAATAGTTATTCGCTTTATACTAAATGAAATGAAGTATTTTCGGTATCTTTTTACTTTTTCTTAAAGTTGAACTCCAGAAAACACGTTTAACTATAAAATTTTAAAATTCAACTCATTTTCAATAAGTTGGAAAACAACAAAAGGCGTTTTCACTCCAAATTACTCGGAAATATCCAAAAACAACTTCAATTTTGTATTCATAATCTAACGCAATTTCCAACATTCAAATATCATTTTCTTTTTTAAAACAAAAACTATAATTGAAAAAATTCACACTTAAACATGGACGAACGCCTCTTAAACCGGATGATTTAAGAATGTTTTTTTGTTAAGATTTGATCATAGGCAAGGGCGGAGTCGCAATGTAAGTTATGAGTTCAGTAGAACACAGTAACTATTACTCAAACTTAATATTAGTGTTAAAAGAATTACTTAGTATGTATAAATATCTTATTGAGCAAAACAGATTATGGTTCAAAACTTATAAACTAAAAATTCTAACTCTGACACTCTGATAGAAAATAGACTATAGATTGTGTGGCTATTACTAAGTAAACATCTTTTTTTTATGCAGTTGAGTTTGAACAACTCTGTTGTTGGAACTTCAGTTCCACCAACAGCCTTCTTTGGCAAAACCTTAAAGAAAGTGAACAACAAAGTTTCCAGCACAAACATCTCAAACAAGAACTTGAGGCTGGTTGCTCAAGAAAAAGAAATTGATGAGAAGAAACAGACTGATGGGGACAGATGGAAGGGACTTGTTAACGATGTGTCCGATGATCAACAAGACATTGCAAGGGGTAAAGGTTTGGTTGATTCGCTTTTCCAGGCTCCAACGGGTACTGGTACTCACCACGCCATCATGAATTCCTATGAATACCTCAGCCAAGGTCTTCGCCAGTAAGTTGAACTGTGTGATCATCTTATCTAAAAGTTTATACTGCTGTTACAACTTGTATGATCATATTGTCTAAATGGTTAAGTTGTTAGAGAGAACACACTTTTATTTACTTGATTATATGTTTTGACATTCGATTAGATATAACTTGGACAACAAGTTGGACGGATTCTACATCGCTCCTGCTTTCATGGACAAGCTTGTTGTTCACATCACCAAGAACTTCTTAACGTTGCCCAA</genome_strand>
        <mrna_strand>CTTAACAAATTACAGAGAGTAATTTTCAAATAAACTTTTGTTATTTTGTGAGTCTTTAGAGTTAGTCAAGTACAAATGGCTACCTCCATCTCAACCATTGGAGCTGTCAACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGTTTGAACAACTCTGTTGTTGGAACTTCAGTTCCACCAACAGCCTTCTTTGGCAAAACCTTAAAGAAAGTGAACAACAAAGTTTCCAGCACAAACATCTCAAACAAGAACTTGAGGCTGGTTGCTCAAGAAAAAGAAATTGATGAGAAGAAACAGACTGATGGGGACAGATGGAAGGGACTTGTTAACGATGTGTCCGATGATCAACAAGACATTGCAAGGGGTAAAGGTTTGGTTGATTCGCTTTTCCAGGCTCCAACGGGTACTGGTACTCACCACGCCATCATGAATTCCTATGAATACCTCAGCCAAGGTCTTCGCCA...........................................................................................................................................ATATAACTTGGACAACAAGTTGGACGGATTCTACATCGCTCCTGCTTTCATGGACAAGCTTGTTGTTCACATCACCAAGAACTTCTTAACGTTGCCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E296459" ref_strand="+" ref_description="SGN-E296459 [cLET-19-F23]">
      <seq>cttaacaaattacagagagtaattttcaaataaacttttgttattttgtgagtctttagagttagtcaagtacaaatggctacctccatctcaaccattggagctgtcaacaagttgagtttgaacaactctgttgttggaacttcagttccaccaacagccttctttggcaaaaccttaaagaaagtgaacaacaaagtttccagcacaaacatctcaaacaagaacttgaggctggttgctcaagaaaaagaaattgatgagaagaaacagactgatggggacagatggaagggacttgttaacgatgtgtccgatgatcaacaagacattgcaaggggtaaaggtttggttgattcgcttttccaggctccaacgggtactggtactcaccacgccatcatgaattcctatgaatacctcagccaaggtcttcgccaatataacttggacaacaagttggacggattctacatcgctcctgctttcatggacaagcttgttgttcacatcaccaagaacttcttaacgttgcccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="41234" stop="43161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41534" g_stop="41647" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41648" i_stop="42297" i_length="650">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42298" g_stop="42623" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="440" r_length="326" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42624" i_stop="42762" i_length="139">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42763" g_stop="42861" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="539" r_length="99" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E296459" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E296459" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41534" e_stop="41647"/>
          <exon e_start="42298" e_stop="42623"/>
          <exon e_start="42763" e_stop="42861"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAACAAATTACAGAGAGTAATTTTCAAATAAACTTTTGTTATTTTGTGAGTCTTTAGAGTTAGTCAAGTACAAATGGCTACCTCCATCTCAACCATTGGAGCTGTCAACAAGGTAATGGTACTGTGTTAAACACTTACTAATTGATCTTTTGGTGTGTGTAAAAAAATGAGAATTAGGAATGGGAGTCAATAGTTATTCGCTTTATACTAAATGAAATGAAGTATTTTCGGTATCTTTTTACTTTTTCTTAAAGTTGAACTCCAGAAAACACGTTTAACTATAAAATTTTAAAATTCAACTCATTTTCAATAAGTTGGAAAACAACAAAAGGCGTTTTCACTCCAAATTACTCGGAAATATCCAAAAACAACTTCAATTTTGTATTCATAATCTAACGCAATTTCCAACATTCAAATATCATTTTCTTTTTTAAAACAAAAACTATAATTGAAAAAATTCACACTTAAACATGGACGAACGCCTCTTAAACCGGATGATTTAAGAATGTTTTTTTGTTAAGATTTGATCATAGGCAAGGGCGGAGTCGCAATGTAAGTTATGAGTTCAGTAGAACACAGTAACTATTACTCAAACTTAATATTAGTGTTAAAAGAATTACTTAGTATGTATAAATATCTTATTGAGCAAAACAGATTATGGTTCAAAACTTATAAACTAAAAATTCTAACTCTGACACTCTGATAGAAAATAGACTATAGATTGTGTGGCTATTACTAAGTAAACATCTTTTTTTTATGCAGTTGAGTTTGAACAACTCTGTTGTTGGAACTTCAGTTCCACCAACAGCCTTCTTTGGCAAAACCTTAAAGAAAGTGAACAACAAAGTTTCCAGCACAAACATCTCAAACAAGAACTTGAGGCTGGTTGCTCAAGAAAAAGAAATTGATGAGAAGAAACAGACTGATGGGGACAGATGGAAGGGACTTGTTAACGATGTGTCCGATGATCAACAAGACATTGCAAGGGGTAAAGGTTTGGTTGATTCGCTTTTCCAGGCTCCAACGGGTACTGGTACTCACCACGCCATCATGAATTCCTATGAATACCTCAGCCAAGGTCTTCGCCAGTAAGTTGAACTGTGTGATCATCTTATCTAAAAGTTTATACTGCTGTTACAACTTGTATGATCATATTGTCTAAATGGTTAAGTTGTTAGAGAGAACACACTTTTATTTACTTGATTATATGTTTTGACATTCGATTAGATATAACTTGGACAACAAGTTGGACGGATTCTACATCGCTCCTGCTTTCATGGACAAGCTTGTTGTTCACATCACCAAGAACTTCTTAACGTTGCCCAA</genome_strand>
        <mrna_strand>CTTAACAAATTACAGAGAGTAATTTTCAAATAAACTTTTGTTATTTTGTGAGTCTTTAGAGTTAGTCAAGTACAAATGGCTACCTCCATCTCAACCATTGGAGCTGTCAACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGTTTGAACAACTCTGTTGTTGGAACTTCAGTTCCACCAACAGCCTTCTTTGGCAAAACCTTAAAGAAAGTGAACAACAAAGTTTCCAGCACAAACATCTCAAACAAGAACTTGAGGCTGGTTGCTCAAGAAAAAGAAATTGATGAGAAGAAACAGACTGATGGGGACAGATGGAAGGGACTTGTTAACGATGTGTCCGATGATCAACAAGACATTGCAAGGGGTAAAGGTTTGGTTGATTCGCTTTTCCAGGCTCCAACGGGTACTGGTACTCACCACGCCATCATGAATTCCTATGAATACCTCAGCCAAGGTCTTCGCCA...........................................................................................................................................ATATAACTTGGACAACAAGTTGGACGGATTCTACATCGCTCCTGCTTTCATGGACAAGCTTGTTGTTCACATCACCAAGAACTTCTTAACGTTGCCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E257494" ref_strand="+" ref_description="SGN-E257494 [cLEG-45-A3]">
      <seq>aacaaattacagagagtaattttcaaataaacttttgttattttgtgagtctttagagttagtcaagtacaaatggctacctccatctcaaccattggagctgtcaacaagttgagtttgaacaactctgttgttggaacttcagttccaccaacagccttctttggcaaaaccttaaagaaagtgaacaacaaagtttccagcacaaacatctcaaacaagaacttgaggctggttgctcaagaaaaagaaattgatgagaagaaacagactgatggggacagatggaagggacttgttaacgatgtgtccgatgatcaacaagacattgcaaggggtaaaggtttggttgattcgcttttccaggctccaacgggtactggtactcaccacgccatcatgaattcctatgaatacctcagccaaggtcttcgccaatataacttggacaacaagttggacggattctacatcgctcctgctttcatggacaagcttgttgttcacatcaccaagaacttcttaacgttgcccaacatcaaggttccacttattttgggtgtttggggaggaaaaggtcaaggtaaatcattccaatgtgagcttgtcttcagaaagatgggaatcaacccaattatgatgagtgctggagaattagaaagtggaaatgcaggagagccagctaaattgatcaggcaaaggtacagagaggccgcggaaatcatcaggaagggaaacatgtgttgcctcttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="41237" stop="44032"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41537" g_stop="41647" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41648" i_stop="42297" i_length="650">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42298" g_stop="42623" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="437" r_length="326" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42624" i_stop="42762" i_length="139">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42763" g_stop="42868" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="543" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42869" i_stop="42957" i_length="89">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42958" g_stop="43043" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="629" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43044" i_stop="43607" i_length="564">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43608" g_stop="43732" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="630" r_stop="754" r_length="125" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E257494" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>754</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257494" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41537" e_stop="41647"/>
          <exon e_start="42298" e_stop="42623"/>
          <exon e_start="42763" e_stop="42868"/>
          <exon e_start="42958" e_stop="43043"/>
          <exon e_start="43608" e_stop="43732"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAATTACAGAGAGTAATTTTCAAATAAACTTTTGTTATTTTGTGAGTCTTTAGAGTTAGTCAAGTACAAATGGCTACCTCCATCTCAACCATTGGAGCTGTCAACAAGGTAATGGTACTGTGTTAAACACTTACTAATTGATCTTTTGGTGTGTGTAAAAAAATGAGAATTAGGAATGGGAGTCAATAGTTATTCGCTTTATACTAAATGAAATGAAGTATTTTCGGTATCTTTTTACTTTTTCTTAAAGTTGAACTCCAGAAAACACGTTTAACTATAAAATTTTAAAATTCAACTCATTTTCAATAAGTTGGAAAACAACAAAAGGCGTTTTCACTCCAAATTACTCGGAAATATCCAAAAACAACTTCAATTTTGTATTCATAATCTAACGCAATTTCCAACATTCAAATATCATTTTCTTTTTTAAAACAAAAACTATAATTGAAAAAATTCACACTTAAACATGGACGAACGCCTCTTAAACCGGATGATTTAAGAATGTTTTTTTGTTAAGATTTGATCATAGGCAAGGGCGGAGTCGCAATGTAAGTTATGAGTTCAGTAGAACACAGTAACTATTACTCAAACTTAATATTAGTGTTAAAAGAATTACTTAGTATGTATAAATATCTTATTGAGCAAAACAGATTATGGTTCAAAACTTATAAACTAAAAATTCTAACTCTGACACTCTGATAGAAAATAGACTATAGATTGTGTGGCTATTACTAAGTAAACATCTTTTTTTTATGCAGTTGAGTTTGAACAACTCTGTTGTTGGAACTTCAGTTCCACCAACAGCCTTCTTTGGCAAAACCTTAAAGAAAGTGAACAACAAAGTTTCCAGCACAAACATCTCAAACAAGAACTTGAGGCTGGTTGCTCAAGAAAAAGAAATTGATGAGAAGAAACAGACTGATGGGGACAGATGGAAGGGACTTGTTAACGATGTGTCCGATGATCAACAAGACATTGCAAGGGGTAAAGGTTTGGTTGATTCGCTTTTCCAGGCTCCAACGGGTACTGGTACTCACCACGCCATCATGAATTCCTATGAATACCTCAGCCAAGGTCTTCGCCAGTAAGTTGAACTGTGTGATCATCTTATCTAAAAGTTTATACTGCTGTTACAACTTGTATGATCATATTGTCTAAATGGTTAAGTTGTTAGAGAGAACACACTTTTATTTACTTGATTATATGTTTTGACATTCGATTAGATATAACTTGGACAACAAGTTGGACGGATTCTACATCGCTCCTGCTTTCATGGACAAGCTTGTTGTTCACATCACCAAGAACTTCTTAACGTTGCCCAACATCAAGGTCTGTTAAAGAGATGTTTGTTAAAAAATTCTGGCTTAAGTAGTGTTTTGTGTAAAAGAAGATTTGAACTTTGTTTATGTTTCTTACAGGTTCCACTTATTTTGGGTGTTTGGGGAGGAAAAGGTCAAGGTAAATCATTCCAATGTGAGCTTGTCTTCAGAAAGATGGGAATCAAGTGAGTATTGCCTTAAATTACATACTATCTTTATTCGGATTTTTTTTTCCGAGGAAATGGACTACAGTTACTTCTAAAACAATCTCTCTACCTACATGAGATAGGGATAAGGTCTCTATATATACGGTTCACCCTCTCCAAACCTCACTTGTGGGATTTAATTTCACTAAGAATGTTGTTGCTGTATATAGACTAAAGTTACTTTTGAAAGAACCTATCTTACCTTCACGAGATAGGGGTAAAATCTGCATACAGTTTACCCTCTCTAGACCCCACTTGTAGGATTTCACTGAGAATGTTATTGTTGTAAGTGGATTAAAGTCTTCCGAATCATCCTTTCTAGCTACCTCCACGAGGTAGGTGTAAGGTCTACGTATAGTCTACTCTCTCCAAACTCGAATTGTGGGATTTCACTGAAAGTTACTTTAGAAACAACCTCTCTACCTTCACGAGCTAGAGGTAAGATTTGCATACAATCTTACCTCTCCAGACCTCACTTGTGGGATTTCAATGAGAATGTTGTTGTAAAAGTTACTTACAATGTTTGGTTTATTAAACTTGCAGCCCAATTATGATGAGTGCTGGAGAATTAGAAAGTGGAAATGCAGGAGAGCCAGCTAAATTGATCAGGCAAAGGTACAGAGAGGCCGCGGAAATCATCAGGAAGGGAAACATGTGTTGCCTCTTCA</genome_strand>
        <mrna_strand>AACAAATTACAGAGAGTAATTTTCAAATAAACTTTTGTTATTTTGTGAGTCTTTAGAGTTAGTCAAGTACAAATGGCTACCTCCATCTCAACCATTGGAGCTGTCAACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGTTTGAACAACTCTGTTGTTGGAACTTCAGTTCCACCAACAGCCTTCTTTGGCAAAACCTTAAAGAAAGTGAACAACAAAGTTTCCAGCACAAACATCTCAAACAAGAACTTGAGGCTGGTTGCTCAAGAAAAAGAAATTGATGAGAAGAAACAGACTGATGGGGACAGATGGAAGGGACTTGTTAACGATGTGTCCGATGATCAACAAGACATTGCAAGGGGTAAAGGTTTGGTTGATTCGCTTTTCCAGGCTCCAACGGGTACTGGTACTCACCACGCCATCATGAATTCCTATGAATACCTCAGCCAAGGTCTTCGCCA...........................................................................................................................................ATATAACTTGGACAACAAGTTGGACGGATTCTACATCGCTCCTGCTTTCATGGACAAGCTTGTTGTTCACATCACCAAGAACTTCTTAACGTTGCCCAACATCAAG.........................................................................................GTTCCACTTATTTTGGGTGTTTGGGGAGGAAAAGGTCAAGGTAAATCATTCCAATGTGAGCTTGTCTTCAGAAAGATGGGAATCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAATTATGATGAGTGCTGGAGAATTAGAAAGTGGAAATGCAGGAGAGCCAGCTAAATTGATCAGGCAAAGGTACAGAGAGGCCGCGGAAATCATCAGGAAGGGAAACATGTGTTGCCTCTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E257441" ref_strand="+" ref_description="SGN-E257441 [cLEG-45-B3]">
      <seq>caaattacagagagtaattttcaaataaacttttgttattttgtgagtctttagagttagtcaagtacaaatggctacctccatctcaaccattggagctgtcaacaagttgagtttgaacaactctgttgttggaacttcagttccaccaacagccttctttggcaaaaccttaaagaaagtgaacaacaaagtttccagcacaaacatctcaaacaagaacttgaggctggttgctcaagaaaaagaaattgatgagaagaaacagactgatggggacagatggaagggacttgttaacgatgtgtccgatgatcaacaagacattgcaaggggtaaaggtttggttgattcgcttttccaggctccaacgggtactggtactcaccacgccatcatgaattcctatgaatacctcagccaaggtcttcgcccatataacttggacaacaagttggacggattctacatcgctcctgctttcatggacaagcttgttgttcacatcaccaagaacttcttaacgttgcccaacatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="41239" stop="43165"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41539" g_stop="41647" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41648" i_stop="42297" i_length="650">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42298" g_stop="42623" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="435" r_length="326" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42624" i_stop="42762" i_length="139">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42763" g_stop="42865" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="538" r_length="103" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E257441" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257441" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41539" e_stop="41647"/>
          <exon e_start="42298" e_stop="42623"/>
          <exon e_start="42763" e_stop="42865"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATTACAGAGAGTAATTTTCAAATAAACTTTTGTTATTTTGTGAGTCTTTAGAGTTAGTCAAGTACAAATGGCTACCTCCATCTCAACCATTGGAGCTGTCAACAAGGTAATGGTACTGTGTTAAACACTTACTAATTGATCTTTTGGTGTGTGTAAAAAAATGAGAATTAGGAATGGGAGTCAATAGTTATTCGCTTTATACTAAATGAAATGAAGTATTTTCGGTATCTTTTTACTTTTTCTTAAAGTTGAACTCCAGAAAACACGTTTAACTATAAAATTTTAAAATTCAACTCATTTTCAATAAGTTGGAAAACAACAAAAGGCGTTTTCACTCCAAATTACTCGGAAATATCCAAAAACAACTTCAATTTTGTATTCATAATCTAACGCAATTTCCAACATTCAAATATCATTTTCTTTTTTAAAACAAAAACTATAATTGAAAAAATTCACACTTAAACATGGACGAACGCCTCTTAAACCGGATGATTTAAGAATGTTTTTTTGTTAAGATTTGATCATAGGCAAGGGCGGAGTCGCAATGTAAGTTATGAGTTCAGTAGAACACAGTAACTATTACTCAAACTTAATATTAGTGTTAAAAGAATTACTTAGTATGTATAAATATCTTATTGAGCAAAACAGATTATGGTTCAAAACTTATAAACTAAAAATTCTAACTCTGACACTCTGATAGAAAATAGACTATAGATTGTGTGGCTATTACTAAGTAAACATCTTTTTTTTATGCAGTTGAGTTTGAACAACTCTGTTGTTGGAACTTCAGTTCCACCAACAGCCTTCTTTGGCAAAACCTTAAAGAAAGTGAACAACAAAGTTTCCAGCACAAACATCTCAAACAAGAACTTGAGGCTGGTTGCTCAAGAAAAAGAAATTGATGAGAAGAAACAGACTGATGGGGACAGATGGAAGGGACTTGTTAACGATGTGTCCGATGATCAACAAGACATTGCAAGGGGTAAAGGTTTGGTTGATTCGCTTTTCCAGGCTCCAACGGGTACTGGTACTCACCACGCCATCATGAATTCCTATGAATACCTCAGCCAAGGTCTTCGCCAGTAAGTTGAACTGTGTGATCATCTTATCTAAAAGTTTATACTGCTGTTACAACTTGTATGATCATATTGTCTAAATGGTTAAGTTGTTAGAGAGAACACACTTTTATTTACTTGATTATATGTTTTGACATTCGATTAGATATAACTTGGACAACAAGTTGGACGGATTCTACATCGCTCCTGCTTTCATGGACAAGCTTGTTGTTCACATCACCAAGAACTTCTTAACGTTGCCCAACATC</genome_strand>
        <mrna_strand>CAAATTACAGAGAGTAATTTTCAAATAAACTTTTGTTATTTTGTGAGTCTTTAGAGTTAGTCAAGTACAAATGGCTACCTCCATCTCAACCATTGGAGCTGTCAACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGTTTGAACAACTCTGTTGTTGGAACTTCAGTTCCACCAACAGCCTTCTTTGGCAAAACCTTAAAGAAAGTGAACAACAAAGTTTCCAGCACAAACATCTCAAACAAGAACTTGAGGCTGGTTGCTCAAGAAAAAGAAATTGATGAGAAGAAACAGACTGATGGGGACAGATGGAAGGGACTTGTTAACGATGTGTCCGATGATCAACAAGACATTGCAAGGGGTAAAGGTTTGGTTGATTCGCTTTTCCAGGCTCCAACGGGTACTGGTACTCACCACGCCATCATGAATTCCTATGAATACCTCAGCCAAGGTCTTCGCCC...........................................................................................................................................ATATAACTTGGACAACAAGTTGGACGGATTCTACATCGCTCCTGCTTTCATGGACAAGCTTGTTGTTCACATCACCAAGAACTTCTTAACGTTGCCCAACATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E285564" ref_strand="+" ref_description="SGN-E285564 [cLES-5-A13]">
      <seq>aattacagagagtaattttcaaataaacttttgttattttgtgagtctttagagttagtcaagtacaaatggctacctccatctcaaccattggagctgtcaacaagttgagtttgaacaactctgttgttggaacttcagttccaccaacagccttctttggcaaaaccttaaagaaagtgaacaacaaagtttccagcacaaacatctcaaacaagaacttgaggctggttgctcaagaaaaagaaattgatgagaagaaacagactgatggggacagatggaagggacttgttaacgatgtgtccgatgatcaacaagaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="41241" stop="42814"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41541" g_stop="41647" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41648" i_stop="42297" i_length="650">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42298" g_stop="42514" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="324" r_length="217" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E285564" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>324</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285564" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41541" e_stop="41647"/>
          <exon e_start="42298" e_stop="42514"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTACAGAGAGTAATTTTCAAATAAACTTTTGTTATTTTGTGAGTCTTTAGAGTTAGTCAAGTACAAATGGCTACCTCCATCTCAACCATTGGAGCTGTCAACAAGGTAATGGTACTGTGTTAAACACTTACTAATTGATCTTTTGGTGTGTGTAAAAAAATGAGAATTAGGAATGGGAGTCAATAGTTATTCGCTTTATACTAAATGAAATGAAGTATTTTCGGTATCTTTTTACTTTTTCTTAAAGTTGAACTCCAGAAAACACGTTTAACTATAAAATTTTAAAATTCAACTCATTTTCAATAAGTTGGAAAACAACAAAAGGCGTTTTCACTCCAAATTACTCGGAAATATCCAAAAACAACTTCAATTTTGTATTCATAATCTAACGCAATTTCCAACATTCAAATATCATTTTCTTTTTTAAAACAAAAACTATAATTGAAAAAATTCACACTTAAACATGGACGAACGCCTCTTAAACCGGATGATTTAAGAATGTTTTTTTGTTAAGATTTGATCATAGGCAAGGGCGGAGTCGCAATGTAAGTTATGAGTTCAGTAGAACACAGTAACTATTACTCAAACTTAATATTAGTGTTAAAAGAATTACTTAGTATGTATAAATATCTTATTGAGCAAAACAGATTATGGTTCAAAACTTATAAACTAAAAATTCTAACTCTGACACTCTGATAGAAAATAGACTATAGATTGTGTGGCTATTACTAAGTAAACATCTTTTTTTTATGCAGTTGAGTTTGAACAACTCTGTTGTTGGAACTTCAGTTCCACCAACAGCCTTCTTTGGCAAAACCTTAAAGAAAGTGAACAACAAAGTTTCCAGCACAAACATCTCAAACAAGAACTTGAGGCTGGTTGCTCAAGAAAAAGAAATTGATGAGAAGAAACAGACTGATGGGGACAGATGGAAGGGACTTGTTAACGATGTGTCCGATGATCAACAAGACA</genome_strand>
        <mrna_strand>AATTACAGAGAGTAATTTTCAAATAAACTTTTGTTATTTTGTGAGTCTTTAGAGTTAGTCAAGTACAAATGGCTACCTCCATCTCAACCATTGGAGCTGTCAACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGTTTGAACAACTCTGTTGTTGGAACTTCAGTTCCACCAACAGCCTTCTTTGGCAAAACCTTAAAGAAAGTGAACAACAAAGTTTCCAGCACAAACATCTCAAACAAGAACTTGAGGCTGGTTGCTCAAGAAAAAGAAATTGATGAGAAGAAACAGACTGATGGGGACAGATGGAAGGGACTTGTTAACGATGTGTCCGATGATCAACAAGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E280249" ref_strand="-" ref_description="SGN-E280249 [cLEL-7-N18](-)">
      <seq>gcacgagaacaaattacattagagtaattttcaaataaacttttggtattttgtgagtctttagagtcccgccaagtacaaatggctacctccatctcaaccattggagctgtcaacaagttgagtttgaacaactctgttgttggaacttcagttccaccaacagccttctttggcaaaaccttaaagaaagtgaacaacaaagtttccagcacagacatttcaaacaagaacttgaggctggttgctcaagaaaaagatattgatgagaagaaacagactgatggggacagatggaagggacttgttaacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="41249" stop="42790"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41549" g_stop="41647" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="120" r_length="100" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41648" i_stop="42297" i_length="650">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42298" g_stop="42490" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="313" r_length="193" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E280249" ref_strand="-">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>292</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E280249" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="41549" e_stop="41647"/>
          <exon e_start="42298" e_stop="42490"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGTAATTTTCAAATAAACTTTTGTTATTTTGTGAGTCTTTAGAGT-TAGTCAAGTACAAATGGCTACCTCCATCTCAACCATTGGAGCTGTCAACAAGGTAATGGTACTGTGTTAAACACTTACTAATTGATCTTTTGGTGTGTGTAAAAAAATGAGAATTAGGAATGGGAGTCAATAGTTATTCGCTTTATACTAAATGAAATGAAGTATTTTCGGTATCTTTTTACTTTTTCTTAAAGTTGAACTCCAGAAAACACGTTTAACTATAAAATTTTAAAATTCAACTCATTTTCAATAAGTTGGAAAACAACAAAAGGCGTTTTCACTCCAAATTACTCGGAAATATCCAAAAACAACTTCAATTTTGTATTCATAATCTAACGCAATTTCCAACATTCAAATATCATTTTCTTTTTTAAAACAAAAACTATAATTGAAAAAATTCACACTTAAACATGGACGAACGCCTCTTAAACCGGATGATTTAAGAATGTTTTTTTGTTAAGATTTGATCATAGGCAAGGGCGGAGTCGCAATGTAAGTTATGAGTTCAGTAGAACACAGTAACTATTACTCAAACTTAATATTAGTGTTAAAAGAATTACTTAGTATGTATAAATATCTTATTGAGCAAAACAGATTATGGTTCAAAACTTATAAACTAAAAATTCTAACTCTGACACTCTGATAGAAAATAGACTATAGATTGTGTGGCTATTACTAAGTAAACATCTTTTTTTTATGCAGTTGAGTTTGAACAACTCTGTTGTTGGAACTTCAGTTCCACCAACAGCCTTCTTTGGCAAAACCTTAAAGAAAGTGAACAACAAAGTTTCCAGCACAAACATCTCAAACAAGAACTTGAGGCTGGTTGCTCAAGAAAAAGAAATTGATGAGAAGAAACAGACTGATGGGGACAGATGGAAGGGACTTGTTAACG</genome_strand>
        <mrna_strand>AGAGTAATTTTCAAATAAACTTTTGGTATTTTGTGAGTCTTTAGAGTCCCGCCAAGTACAAATGGCTACCTCCATCTCAACCATTGGAGCTGTCAACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGTTTGAACAACTCTGTTGTTGGAACTTCAGTTCCACCAACAGCCTTCTTTGGCAAAACCTTAAAGAAAGTGAACAACAAAGTTTCCAGCACAGACATTTCAAACAAGAACTTGAGGCTGGTTGCTCAAGAAAAAGATATTGATGAGAAGAAACAGACTGATGGGGACAGATGGAAGGGACTTGTTAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E330727" ref_strand="+" ref_description="SGN-E330727 [cTOD-8-O18]">
      <seq>gctacctccatctcaaccattggagctgtcaacaagttgagtttgaacaactctgttgttggaacttcagttccaccaacagccttctttggcaaaaccttaaagaaagtgaacaacaaagtttccagcacaaacatctcaaacaagaacttgaggctggttgctcaagaaaaagaaattgatgagaagaaacagactgatggggacagatggaagggacttgttaacgatgtgtccgatgatcaacaagacattgcaaggggtaaaggtttggttgattcgcttttccaggctccaacgggtactggtactcaccacgccatcatgaattcctatgaatacctcagccaaggtcttcgccaatataacttggacaacaagttggacggattctacatcgctcctgctatcatggacaagcttgttgttcacatcaccaagaacttcttaacgttgcccaacatcaaggttccacttattttgggtgtttggggaggaaaaggtcaaggtaaatcattccaatgtgagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="41312" stop="43318"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41612" g_stop="41647" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41648" i_stop="42297" i_length="650">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42298" g_stop="42623" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="362" r_length="326" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42624" i_stop="42762" i_length="139">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42763" g_stop="42868" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="468" r_length="106" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42869" i_stop="42957" i_length="89">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42958" g_stop="43018" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="529" r_length="61" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E330727" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41612" e_stop="41647"/>
          <exon e_start="42298" e_stop="42623"/>
          <exon e_start="42763" e_stop="42868"/>
          <exon e_start="42958" e_stop="43018"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTACCTCCATCTCAACCATTGGAGCTGTCAACAAGGTAATGGTACTGTGTTAAACACTTACTAATTGATCTTTTGGTGTGTGTAAAAAAATGAGAATTAGGAATGGGAGTCAATAGTTATTCGCTTTATACTAAATGAAATGAAGTATTTTCGGTATCTTTTTACTTTTTCTTAAAGTTGAACTCCAGAAAACACGTTTAACTATAAAATTTTAAAATTCAACTCATTTTCAATAAGTTGGAAAACAACAAAAGGCGTTTTCACTCCAAATTACTCGGAAATATCCAAAAACAACTTCAATTTTGTATTCATAATCTAACGCAATTTCCAACATTCAAATATCATTTTCTTTTTTAAAACAAAAACTATAATTGAAAAAATTCACACTTAAACATGGACGAACGCCTCTTAAACCGGATGATTTAAGAATGTTTTTTTGTTAAGATTTGATCATAGGCAAGGGCGGAGTCGCAATGTAAGTTATGAGTTCAGTAGAACACAGTAACTATTACTCAAACTTAATATTAGTGTTAAAAGAATTACTTAGTATGTATAAATATCTTATTGAGCAAAACAGATTATGGTTCAAAACTTATAAACTAAAAATTCTAACTCTGACACTCTGATAGAAAATAGACTATAGATTGTGTGGCTATTACTAAGTAAACATCTTTTTTTTATGCAGTTGAGTTTGAACAACTCTGTTGTTGGAACTTCAGTTCCACCAACAGCCTTCTTTGGCAAAACCTTAAAGAAAGTGAACAACAAAGTTTCCAGCACAAACATCTCAAACAAGAACTTGAGGCTGGTTGCTCAAGAAAAAGAAATTGATGAGAAGAAACAGACTGATGGGGACAGATGGAAGGGACTTGTTAACGATGTGTCCGATGATCAACAAGACATTGCAAGGGGTAAAGGTTTGGTTGATTCGCTTTTCCAGGCTCCAACGGGTACTGGTACTCACCACGCCATCATGAATTCCTATGAATACCTCAGCCAAGGTCTTCGCCAGTAAGTTGAACTGTGTGATCATCTTATCTAAAAGTTTATACTGCTGTTACAACTTGTATGATCATATTGTCTAAATGGTTAAGTTGTTAGAGAGAACACACTTTTATTTACTTGATTATATGTTTTGACATTCGATTAGATATAACTTGGACAACAAGTTGGACGGATTCTACATCGCTCCTGCTTTCATGGACAAGCTTGTTGTTCACATCACCAAGAACTTCTTAACGTTGCCCAACATCAAGGTCTGTTAAAGAGATGTTTGTTAAAAAATTCTGGCTTAAGTAGTGTTTTGTGTAAAAGAAGATTTGAACTTTGTTTATGTTTCTTACAGGTTCCACTTATTTTGGGTGTTTGGGGAGGAAAAGGTCAAGGTAAATCATTCCAATGTGAGC</genome_strand>
        <mrna_strand>GCTACCTCCATCTCAACCATTGGAGCTGTCAACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGTTTGAACAACTCTGTTGTTGGAACTTCAGTTCCACCAACAGCCTTCTTTGGCAAAACCTTAAAGAAAGTGAACAACAAAGTTTCCAGCACAAACATCTCAAACAAGAACTTGAGGCTGGTTGCTCAAGAAAAAGAAATTGATGAGAAGAAACAGACTGATGGGGACAGATGGAAGGGACTTGTTAACGATGTGTCCGATGATCAACAAGACATTGCAAGGGGTAAAGGTTTGGTTGATTCGCTTTTCCAGGCTCCAACGGGTACTGGTACTCACCACGCCATCATGAATTCCTATGAATACCTCAGCCAAGGTCTTCGCCA...........................................................................................................................................ATATAACTTGGACAACAAGTTGGACGGATTCTACATCGCTCCTGCTATCATGGACAAGCTTGTTGTTCACATCACCAAGAACTTCTTAACGTTGCCCAACATCAAG.........................................................................................GTTCCACTTATTTTGGGTGTTTGGGGAGGAAAAGGTCAAGGTAAATCATTCCAATGTGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E702819" ref_strand="+" ref_description="SGN-E702819 [FA19DB07]">
      <seq>caaccattggagctgtcaacaagttgagtttgaacaactctgttgttggaacttcagttccaccaacagccttctttggcaaaaccttaaagaaagtgaacaacaaagtttccagcacaaacatctcaaacaagaacttgaggctggttgctcaagaaaaagaaattgatgagaagaaacagactgatggggacagatggaagggacttgttaacgatgtgtccgatgatcaacaagacattgcaaggggtaaaggtttggttgattcgcttttccaggctccaacgggtactggtactcaccacgccatcatgaattcctatgaatacctcagccaaggtcttcgccaatataacttggacaacaagttggacggattctacatcgctcctgctttcatggacaagcttgttgttcacatcaccaagaacttcttaacgttgtccaacatcaaggttccacttattttgggtgtttggggaggaaaaggtcaaggtaaatcattccaatgtgagcttgtcttcagaaagatgggaatcaacccaattatgatgagtgctggagaattagaaagtggaaatgcaggagagccagctaaattgatcaggcaaaggtacagagaggccgcggaaatcatcaggaagggaaacatgtgttgcctcttcatcaacgatcttgatgcaggagccggtagaatgggtggaactacacaatacactgtcaacaacccaatggtgaatgctacactcatgaacattgctgataacccgacgaatgtccaactcccccggtatgtacaacaagcaagagaatgccagggtacctattattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="41325" stop="44197"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41625" g_stop="41647" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41648" i_stop="42297" i_length="650">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42298" g_stop="42623" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="349" r_length="326" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42624" i_stop="42762" i_length="139">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42763" g_stop="42868" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="455" r_length="106" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42869" i_stop="42957" i_length="89">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42958" g_stop="43043" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="541" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43044" i_stop="43607" i_length="564">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43608" g_stop="43897" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="832" r_length="291" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E702819" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>831</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702819" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41625" e_stop="41647"/>
          <exon e_start="42298" e_stop="42623"/>
          <exon e_start="42763" e_stop="42868"/>
          <exon e_start="42958" e_stop="43043"/>
          <exon e_start="43608" e_stop="43897"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACCATTGGAGCTGTCAACAAGGTAATGGTACTGTGTTAAACACTTACTAATTGATCTTTTGGTGTGTGTAAAAAAATGAGAATTAGGAATGGGAGTCAATAGTTATTCGCTTTATACTAAATGAAATGAAGTATTTTCGGTATCTTTTTACTTTTTCTTAAAGTTGAACTCCAGAAAACACGTTTAACTATAAAATTTTAAAATTCAACTCATTTTCAATAAGTTGGAAAACAACAAAAGGCGTTTTCACTCCAAATTACTCGGAAATATCCAAAAACAACTTCAATTTTGTATTCATAATCTAACGCAATTTCCAACATTCAAATATCATTTTCTTTTTTAAAACAAAAACTATAATTGAAAAAATTCACACTTAAACATGGACGAACGCCTCTTAAACCGGATGATTTAAGAATGTTTTTTTGTTAAGATTTGATCATAGGCAAGGGCGGAGTCGCAATGTAAGTTATGAGTTCAGTAGAACACAGTAACTATTACTCAAACTTAATATTAGTGTTAAAAGAATTACTTAGTATGTATAAATATCTTATTGAGCAAAACAGATTATGGTTCAAAACTTATAAACTAAAAATTCTAACTCTGACACTCTGATAGAAAATAGACTATAGATTGTGTGGCTATTACTAAGTAAACATCTTTTTTTTATGCAGTTGAGTTTGAACAACTCTGTTGTTGGAACTTCAGTTCCACCAACAGCCTTCTTTGGCAAAACCTTAAAGAAAGTGAACAACAAAGTTTCCAGCACAAACATCTCAAACAAGAACTTGAGGCTGGTTGCTCAAGAAAAAGAAATTGATGAGAAGAAACAGACTGATGGGGACAGATGGAAGGGACTTGTTAACGATGTGTCCGATGATCAACAAGACATTGCAAGGGGTAAAGGTTTGGTTGATTCGCTTTTCCAGGCTCCAACGGGTACTGGTACTCACCACGCCATCATGAATTCCTATGAATACCTCAGCCAAGGTCTTCGCCAGTAAGTTGAACTGTGTGATCATCTTATCTAAAAGTTTATACTGCTGTTACAACTTGTATGATCATATTGTCTAAATGGTTAAGTTGTTAGAGAGAACACACTTTTATTTACTTGATTATATGTTTTGACATTCGATTAGATATAACTTGGACAACAAGTTGGACGGATTCTACATCGCTCCTGCTTTCATGGACAAGCTTGTTGTTCACATCACCAAGAACTTCTTAACGTTGCCCAACATCAAGGTCTGTTAAAGAGATGTTTGTTAAAAAATTCTGGCTTAAGTAGTGTTTTGTGTAAAAGAAGATTTGAACTTTGTTTATGTTTCTTACAGGTTCCACTTATTTTGGGTGTTTGGGGAGGAAAAGGTCAAGGTAAATCATTCCAATGTGAGCTTGTCTTCAGAAAGATGGGAATCAAGTGAGTATTGCCTTAAATTACATACTATCTTTATTCGGATTTTTTTTTCCGAGGAAATGGACTACAGTTACTTCTAAAACAATCTCTCTACCTACATGAGATAGGGATAAGGTCTCTATATATACGGTTCACCCTCTCCAAACCTCACTTGTGGGATTTAATTTCACTAAGAATGTTGTTGCTGTATATAGACTAAAGTTACTTTTGAAAGAACCTATCTTACCTTCACGAGATAGGGGTAAAATCTGCATACAGTTTACCCTCTCTAGACCCCACTTGTAGGATTTCACTGAGAATGTTATTGTTGTAAGTGGATTAAAGTCTTCCGAATCATCCTTTCTAGCTACCTCCACGAGGTAGGTGTAAGGTCTACGTATAGTCTACTCTCTCCAAACTCGAATTGTGGGATTTCACTGAAAGTTACTTTAGAAACAACCTCTCTACCTTCACGAGCTAGAGGTAAGATTTGCATACAATCTTACCTCTCCAGACCTCACTTGTGGGATTTCAATGAGAATGTTGTTGTAAAAGTTACTTACAATGTTTGGTTTATTAAACTTGCAGCCCAATTATGATGAGTGCTGGAGAATTAGAAAGTGGAAATGCAGGAGAGCCAGCTAAATTGATCAGGCAAAGGTACAGAGAGGCCGCGGAAATCATCAGGAAGGGAAACATGTGTTGCCTCTTCATCAACGATCTTGATGCAGGAGCCGGTAGAATGGGTGGAACTACACAATACACTGTCAACAACCAAATGGTGAATGCTACACTCATGAACATTGCTGATAACCCGACGAATGTCCAACT-CCCCGGTATGTACAACAAGCAAGAGAATGCCAGGGTACCTATTATTG</genome_strand>
        <mrna_strand>CAACCATTGGAGCTGTCAACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGTTTGAACAACTCTGTTGTTGGAACTTCAGTTCCACCAACAGCCTTCTTTGGCAAAACCTTAAAGAAAGTGAACAACAAAGTTTCCAGCACAAACATCTCAAACAAGAACTTGAGGCTGGTTGCTCAAGAAAAAGAAATTGATGAGAAGAAACAGACTGATGGGGACAGATGGAAGGGACTTGTTAACGATGTGTCCGATGATCAACAAGACATTGCAAGGGGTAAAGGTTTGGTTGATTCGCTTTTCCAGGCTCCAACGGGTACTGGTACTCACCACGCCATCATGAATTCCTATGAATACCTCAGCCAAGGTCTTCGCCA...........................................................................................................................................ATATAACTTGGACAACAAGTTGGACGGATTCTACATCGCTCCTGCTTTCATGGACAAGCTTGTTGTTCACATCACCAAGAACTTCTTAACGTTGTCCAACATCAAG.........................................................................................GTTCCACTTATTTTGGGTGTTTGGGGAGGAAAAGGTCAAGGTAAATCATTCCAATGTGAGCTTGTCTTCAGAAAGATGGGAATCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAATTATGATGAGTGCTGGAGAATTAGAAAGTGGAAATGCAGGAGAGCCAGCTAAATTGATCAGGCAAAGGTACAGAGAGGCCGCGGAAATCATCAGGAAGGGAAACATGTGTTGCCTCTTCATCAACGATCTTGATGCAGGAGCCGGTAGAATGGGTGGAACTACACAATACACTGTCAACAACCCAATGGTGAATGCTACACTCATGAACATTGCTGATAACCCGACGAATGTCCAACTCCCCCGGTATGTACAACAAGCAAGAGAATGCCAGGGTACCTATTATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E325734" ref_strand="+" ref_description="SGN-E325734 [cTOC-15-N21]">
      <seq>aaccattggagctgtcaacaagttgagtttgaacaactctgttgttggaacttcagttccaccaacagccttctttggcaaaaccttaaagaaagtgaacaacaaagtttccagcacaaacatctcaaacaagaacttgaggctggttgctcaagaaaaagaaattgatgagaagaaacagactgatggggacagatggaagggacttgttaacgatgtgtccgatgatcaacaagacattgcaaggggtaaaggtttggttgattcgcttttccaggctccaacgggtactggtactcaccacgccatcatgaattcctatgaatacctcagccaaggtcttcgccaatataacttggacaacaagttggacggattctacatcgctcctgctttcatggacaagcttgttgttcacatcaccaagaacttcttaacgttgcccaacatcaaggttccacttattttgggtgtttggggaggaaaaggtcaaggtaaatcattccaatgtgagcttgtcttcagaaagatgggaatcaacccaattatgatgagtgctggagaattagaaagtggaaatgcaggagagccagctaaattgatcaggcaaaggtacagagaggccgcggaaatcatcaggaagggaacatgtgttgcctcttcatcaacgatcttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="41326" stop="44046"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41626" g_stop="41647" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41648" i_stop="42297" i_length="650">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42298" g_stop="42623" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="348" r_length="326" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42624" i_stop="42762" i_length="139">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42763" g_stop="42868" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="454" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42869" i_stop="42957" i_length="89">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42958" g_stop="43043" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="540" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43044" i_stop="43607" i_length="564">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43608" g_stop="43746" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="678" r_length="138" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E325734" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325734" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41626" e_stop="41647"/>
          <exon e_start="42298" e_stop="42623"/>
          <exon e_start="42763" e_stop="42868"/>
          <exon e_start="42958" e_stop="43043"/>
          <exon e_start="43608" e_stop="43746"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCATTGGAGCTGTCAACAAGGTAATGGTACTGTGTTAAACACTTACTAATTGATCTTTTGGTGTGTGTAAAAAAATGAGAATTAGGAATGGGAGTCAATAGTTATTCGCTTTATACTAAATGAAATGAAGTATTTTCGGTATCTTTTTACTTTTTCTTAAAGTTGAACTCCAGAAAACACGTTTAACTATAAAATTTTAAAATTCAACTCATTTTCAATAAGTTGGAAAACAACAAAAGGCGTTTTCACTCCAAATTACTCGGAAATATCCAAAAACAACTTCAATTTTGTATTCATAATCTAACGCAATTTCCAACATTCAAATATCATTTTCTTTTTTAAAACAAAAACTATAATTGAAAAAATTCACACTTAAACATGGACGAACGCCTCTTAAACCGGATGATTTAAGAATGTTTTTTTGTTAAGATTTGATCATAGGCAAGGGCGGAGTCGCAATGTAAGTTATGAGTTCAGTAGAACACAGTAACTATTACTCAAACTTAATATTAGTGTTAAAAGAATTACTTAGTATGTATAAATATCTTATTGAGCAAAACAGATTATGGTTCAAAACTTATAAACTAAAAATTCTAACTCTGACACTCTGATAGAAAATAGACTATAGATTGTGTGGCTATTACTAAGTAAACATCTTTTTTTTATGCAGTTGAGTTTGAACAACTCTGTTGTTGGAACTTCAGTTCCACCAACAGCCTTCTTTGGCAAAACCTTAAAGAAAGTGAACAACAAAGTTTCCAGCACAAACATCTCAAACAAGAACTTGAGGCTGGTTGCTCAAGAAAAAGAAATTGATGAGAAGAAACAGACTGATGGGGACAGATGGAAGGGACTTGTTAACGATGTGTCCGATGATCAACAAGACATTGCAAGGGGTAAAGGTTTGGTTGATTCGCTTTTCCAGGCTCCAACGGGTACTGGTACTCACCACGCCATCATGAATTCCTATGAATACCTCAGCCAAGGTCTTCGCCAGTAAGTTGAACTGTGTGATCATCTTATCTAAAAGTTTATACTGCTGTTACAACTTGTATGATCATATTGTCTAAATGGTTAAGTTGTTAGAGAGAACACACTTTTATTTACTTGATTATATGTTTTGACATTCGATTAGATATAACTTGGACAACAAGTTGGACGGATTCTACATCGCTCCTGCTTTCATGGACAAGCTTGTTGTTCACATCACCAAGAACTTCTTAACGTTGCCCAACATCAAGGTCTGTTAAAGAGATGTTTGTTAAAAAATTCTGGCTTAAGTAGTGTTTTGTGTAAAAGAAGATTTGAACTTTGTTTATGTTTCTTACAGGTTCCACTTATTTTGGGTGTTTGGGGAGGAAAAGGTCAAGGTAAATCATTCCAATGTGAGCTTGTCTTCAGAAAGATGGGAATCAAGTGAGTATTGCCTTAAATTACATACTATCTTTATTCGGATTTTTTTTTCCGAGGAAATGGACTACAGTTACTTCTAAAACAATCTCTCTACCTACATGAGATAGGGATAAGGTCTCTATATATACGGTTCACCCTCTCCAAACCTCACTTGTGGGATTTAATTTCACTAAGAATGTTGTTGCTGTATATAGACTAAAGTTACTTTTGAAAGAACCTATCTTACCTTCACGAGATAGGGGTAAAATCTGCATACAGTTTACCCTCTCTAGACCCCACTTGTAGGATTTCACTGAGAATGTTATTGTTGTAAGTGGATTAAAGTCTTCCGAATCATCCTTTCTAGCTACCTCCACGAGGTAGGTGTAAGGTCTACGTATAGTCTACTCTCTCCAAACTCGAATTGTGGGATTTCACTGAAAGTTACTTTAGAAACAACCTCTCTACCTTCACGAGCTAGAGGTAAGATTTGCATACAATCTTACCTCTCCAGACCTCACTTGTGGGATTTCAATGAGAATGTTGTTGTAAAAGTTACTTACAATGTTTGGTTTATTAAACTTGCAGCCCAATTATGATGAGTGCTGGAGAATTAGAAAGTGGAAATGCAGGAGAGCCAGCTAAATTGATCAGGCAAAGGTACAGAGAGGCCGCGGAAATCATCAGGAAGGGAAACATGTGTTGCCTCTTCATCAACGATCTTGAT</genome_strand>
        <mrna_strand>AACCATTGGAGCTGTCAACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGTTTGAACAACTCTGTTGTTGGAACTTCAGTTCCACCAACAGCCTTCTTTGGCAAAACCTTAAAGAAAGTGAACAACAAAGTTTCCAGCACAAACATCTCAAACAAGAACTTGAGGCTGGTTGCTCAAGAAAAAGAAATTGATGAGAAGAAACAGACTGATGGGGACAGATGGAAGGGACTTGTTAACGATGTGTCCGATGATCAACAAGACATTGCAAGGGGTAAAGGTTTGGTTGATTCGCTTTTCCAGGCTCCAACGGGTACTGGTACTCACCACGCCATCATGAATTCCTATGAATACCTCAGCCAAGGTCTTCGCCA...........................................................................................................................................ATATAACTTGGACAACAAGTTGGACGGATTCTACATCGCTCCTGCTTTCATGGACAAGCTTGTTGTTCACATCACCAAGAACTTCTTAACGTTGCCCAACATCAAG.........................................................................................GTTCCACTTATTTTGGGTGTTTGGGGAGGAAAAGGTCAAGGTAAATCATTCCAATGTGAGCTTGTCTTCAGAAAGATGGGAATCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAATTATGATGAGTGCTGGAGAATTAGAAAGTGGAAATGCAGGAGAGCCAGCTAAATTGATCAGGCAAAGGTACAGAGAGGCCGCGGAAATCATCAGGAAGGG-AACATGTGTTGCCTCTTCATCAACGATCTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E702654" ref_strand="+" ref_description="SGN-E702654 [FA19BC10]">
      <seq>agattgtgtggctattactaagtaaacatcttttttttatgcagttgagtttgaacaactctgttgttggaacttcagttccaccaacagccttctttggcaaaaccttaaagaaagtgaacaacaaagtttccagcacaaacatctcaaacaagaacttgaggctggttgctcaagaaaaagaaattgatgagaagaaacagactgatggggacagatggaagggacttgttaacgatgtgtccgatgatcaacaagacattgcaaggggtaaaggtttggttgattcgcttttccaggctccaacgggtactggtactcaccacgccatcatgaattcctatgaatacctcagccaaggtcttcgccaatataacttggacaacaagttggacggattctacatcgctcctgctttcatggacaagcttgttgttcacatcaccaagaacttcttaacgttgtccaacatcaaggttccacttattttgggtgtttggggaggaaaaggtcaaggtaaatcattccaatgtgagcttgtcttcagaaagatgggaatcaacccaattatgatgagtgctggagaattagaaagtggaaatgcaggagagccagctaaattgatcaggcaaaggtacagagaggccgcggaaatcatcaggaagggaaacatgtgttgcctcttcatcaacgatcttgatgcaggagccggtagaatgggtggaactacacaatacactgtcaacaaccaaatggtgaatgctacactcatgaacattgctgataacccgacgaatgtccaactccccggtatgtacaacaagcaagagaatgccagggtacctattattgtcactggtaacgatttctccacattgtatgcacctcttatccgtgatggtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="41954" stop="44248"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42254" g_stop="42623" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="370" r_length="370" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42624" i_stop="42762" i_length="139">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42763" g_stop="42868" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="476" r_length="106" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42869" i_stop="42957" i_length="89">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42958" g_stop="43043" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="562" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43044" i_stop="43607" i_length="564">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43608" g_stop="43948" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="903" r_length="341" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E702654" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>903</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702654" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42254" e_stop="42623"/>
          <exon e_start="42763" e_stop="42868"/>
          <exon e_start="42958" e_stop="43043"/>
          <exon e_start="43608" e_stop="43948"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTGTGTGGCTATTACTAAGTAAACATCTTTTTTTTATGCAGTTGAGTTTGAACAACTCTGTTGTTGGAACTTCAGTTCCACCAACAGCCTTCTTTGGCAAAACCTTAAAGAAAGTGAACAACAAAGTTTCCAGCACAAACATCTCAAACAAGAACTTGAGGCTGGTTGCTCAAGAAAAAGAAATTGATGAGAAGAAACAGACTGATGGGGACAGATGGAAGGGACTTGTTAACGATGTGTCCGATGATCAACAAGACATTGCAAGGGGTAAAGGTTTGGTTGATTCGCTTTTCCAGGCTCCAACGGGTACTGGTACTCACCACGCCATCATGAATTCCTATGAATACCTCAGCCAAGGTCTTCGCCAGTAAGTTGAACTGTGTGATCATCTTATCTAAAAGTTTATACTGCTGTTACAACTTGTATGATCATATTGTCTAAATGGTTAAGTTGTTAGAGAGAACACACTTTTATTTACTTGATTATATGTTTTGACATTCGATTAGATATAACTTGGACAACAAGTTGGACGGATTCTACATCGCTCCTGCTTTCATGGACAAGCTTGTTGTTCACATCACCAAGAACTTCTTAACGTTGCCCAACATCAAGGTCTGTTAAAGAGATGTTTGTTAAAAAATTCTGGCTTAAGTAGTGTTTTGTGTAAAAGAAGATTTGAACTTTGTTTATGTTTCTTACAGGTTCCACTTATTTTGGGTGTTTGGGGAGGAAAAGGTCAAGGTAAATCATTCCAATGTGAGCTTGTCTTCAGAAAGATGGGAATCAAGTGAGTATTGCCTTAAATTACATACTATCTTTATTCGGATTTTTTTTTCCGAGGAAATGGACTACAGTTACTTCTAAAACAATCTCTCTACCTACATGAGATAGGGATAAGGTCTCTATATATACGGTTCACCCTCTCCAAACCTCACTTGTGGGATTTAATTTCACTAAGAATGTTGTTGCTGTATATAGACTAAAGTTACTTTTGAAAGAACCTATCTTACCTTCACGAGATAGGGGTAAAATCTGCATACAGTTTACCCTCTCTAGACCCCACTTGTAGGATTTCACTGAGAATGTTATTGTTGTAAGTGGATTAAAGTCTTCCGAATCATCCTTTCTAGCTACCTCCACGAGGTAGGTGTAAGGTCTACGTATAGTCTACTCTCTCCAAACTCGAATTGTGGGATTTCACTGAAAGTTACTTTAGAAACAACCTCTCTACCTTCACGAGCTAGAGGTAAGATTTGCATACAATCTTACCTCTCCAGACCTCACTTGTGGGATTTCAATGAGAATGTTGTTGTAAAAGTTACTTACAATGTTTGGTTTATTAAACTTGCAGCCCAATTATGATGAGTGCTGGAGAATTAGAAAGTGGAAATGCAGGAGAGCCAGCTAAATTGATCAGGCAAAGGTACAGAGAGGCCGCGGAAATCATCAGGAAGGGAAACATGTGTTGCCTCTTCATCAACGATCTTGATGCAGGAGCCGGTAGAATGGGTGGAACTACACAATACACTGTCAACAACCAAATGGTGAATGCTACACTCATGAACATTGCTGATAACCCGACGAATGTCCAACTCCCCGGTATGTACAACAAGCAAGAGAATGCCAGGGTACCTATTATTGTCACTGGTAACGATTTCTCCACATTGTATGCACCTCTTATCCGTGATGGTC</genome_strand>
        <mrna_strand>AGATTGTGTGGCTATTACTAAGTAAACATCTTTTTTTTATGCAGTTGAGTTTGAACAACTCTGTTGTTGGAACTTCAGTTCCACCAACAGCCTTCTTTGGCAAAACCTTAAAGAAAGTGAACAACAAAGTTTCCAGCACAAACATCTCAAACAAGAACTTGAGGCTGGTTGCTCAAGAAAAAGAAATTGATGAGAAGAAACAGACTGATGGGGACAGATGGAAGGGACTTGTTAACGATGTGTCCGATGATCAACAAGACATTGCAAGGGGTAAAGGTTTGGTTGATTCGCTTTTCCAGGCTCCAACGGGTACTGGTACTCACCACGCCATCATGAATTCCTATGAATACCTCAGCCAAGGTCTTCGCCA...........................................................................................................................................ATATAACTTGGACAACAAGTTGGACGGATTCTACATCGCTCCTGCTTTCATGGACAAGCTTGTTGTTCACATCACCAAGAACTTCTTAACGTTGTCCAACATCAAG.........................................................................................GTTCCACTTATTTTGGGTGTTTGGGGAGGAAAAGGTCAAGGTAAATCATTCCAATGTGAGCTTGTCTTCAGAAAGATGGGAATCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAATTATGATGAGTGCTGGAGAATTAGAAAGTGGAAATGCAGGAGAGCCAGCTAAATTGATCAGGCAAAGGTACAGAGAGGCCGCGGAAATCATCAGGAAGGGAAACATGTGTTGCCTCTTCATCAACGATCTTGATGCAGGAGCCGGTAGAATGGGTGGAACTACACAATACACTGTCAACAACCAAATGGTGAATGCTACACTCATGAACATTGCTGATAACCCGACGAATGTCCAACTCCCCGGTATGTACAACAAGCAAGAGAATGCCAGGGTACCTATTATTGTCACTGGTAACGATTTCTCCACATTGTATGCACCTCTTATCCGTGATGGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E698802" ref_strand="+" ref_description="SGN-E698802 [FA07CE11]">
      <seq>tctgttgttggaacttcagttccaccccttagccttctttggcaaaaccttaaagaaagtgaacaacaaagtttccagcacaaacatctcaaacaagaacttgaggctggttgctcaagaaaaagaaattgatgagaagaaacagactgatggggacagatggaagggacttgttaaccatgtgtccgatgatcaacaagacattgcaaggggtaaaggtttggttgattcgcttttccaggctccaacgggtattggtactcaccacgccatcatgaattcctatgaatacctcagccaaggtcttcgccaatataacttggacaacaagttggacggattctacatcgctcctgctttcatggaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="42013" stop="43118"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42313" g_stop="42623" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="312" r_length="312" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42624" i_stop="42762" i_length="139">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42763" g_stop="42818" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="368" r_length="56" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E698802" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>367</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698802" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42313" e_stop="42623"/>
          <exon e_start="42763" e_stop="42818"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGTTGTTGGAACTTCAGTTCCA-CCAACAGCCTTCTTTGGCAAAACCTTAAAGAAAGTGAACAACAAAGTTTCCAGCACAAACATCTCAAACAAGAACTTGAGGCTGGTTGCTCAAGAAAAAGAAATTGATGAGAAGAAACAGACTGATGGGGACAGATGGAAGGGACTTGTTAACGATGTGTCCGATGATCAACAAGACATTGCAAGGGGTAAAGGTTTGGTTGATTCGCTTTTCCAGGCTCCAACGGGTACTGGTACTCACCACGCCATCATGAATTCCTATGAATACCTCAGCCAAGGTCTTCGCCAGTAAGTTGAACTGTGTGATCATCTTATCTAAAAGTTTATACTGCTGTTACAACTTGTATGATCATATTGTCTAAATGGTTAAGTTGTTAGAGAGAACACACTTTTATTTACTTGATTATATGTTTTGACATTCGATTAGATATAACTTGGACAACAAGTTGGACGGATTCTACATCGCTCCTGCTTTCATGGACA</genome_strand>
        <mrna_strand>TCTGTTGTTGGAACTTCAGTTCCACCCCTTAGCCTTCTTTGGCAAAACCTTAAAGAAAGTGAACAACAAAGTTTCCAGCACAAACATCTCAAACAAGAACTTGAGGCTGGTTGCTCAAGAAAAAGAAATTGATGAGAAGAAACAGACTGATGGGGACAGATGGAAGGGACTTGTTAACCATGTGTCCGATGATCAACAAGACATTGCAAGGGGTAAAGGTTTGGTTGATTCGCTTTTCCAGGCTCCAACGGGTATTGGTACTCACCACGCCATCATGAATTCCTATGAATACCTCAGCCAAGGTCTTCGCCA...........................................................................................................................................ATATAACTTGGACAACAAGTTGGACGGATTCTACATCGCTCCTGCTTTCATGGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E326861" ref_strand="+" ref_description="SGN-E326861 [cTOC-25-C16]">
      <seq>tgttgttggaacttcagttccaccaacagccttctttggcaaaaccttaaagaaagtgaacaacaaagtttccagcacaaacatctcaaacaagaacttgaggctggttgctcaagaaaaagaaattgatgagaagaaacagactgatggggacagatggaagggacttgttaacgatgtgtccgatgatcaacaagacattgcaaggggtaaaggtttggttgattcgcttttccaggctccaacgggtactggtactcaccacgccatcatgaattcctatgaatacctcagccaaggtcttcgccaatataacttggacaacaagttggacggattctacatcgctcctgctttcatggacaagcttgttgttcacatcaccaagaacttcttaacgttgcccaacatcaaggttccacttattttgggtgtttggggaggaaaaggtcaaggtaaatcattccaatgtgagcttgtcttcagaaagatgggaatcaacccaattatgatgagtgctggagaattagaaagtggaaatgcaggagagccagctaaattgatcaggcaaaggtacagagaggccgcggaaatcatcaggaaaggaaacatgtgttgcctcttcatcaacgatcttgatgcaggagcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="42015" stop="44055"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42315" g_stop="42623" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="309" r_length="309" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42624" i_stop="42762" i_length="139">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42763" g_stop="42868" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="415" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42869" i_stop="42957" i_length="89">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42958" g_stop="43043" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="501" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43044" i_stop="43607" i_length="564">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43608" g_stop="43755" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="649" r_length="148" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E326861" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326861" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42315" e_stop="42623"/>
          <exon e_start="42763" e_stop="42868"/>
          <exon e_start="42958" e_stop="43043"/>
          <exon e_start="43608" e_stop="43755"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTGTTGGAACTTCAGTTCCACCAACAGCCTTCTTTGGCAAAACCTTAAAGAAAGTGAACAACAAAGTTTCCAGCACAAACATCTCAAACAAGAACTTGAGGCTGGTTGCTCAAGAAAAAGAAATTGATGAGAAGAAACAGACTGATGGGGACAGATGGAAGGGACTTGTTAACGATGTGTCCGATGATCAACAAGACATTGCAAGGGGTAAAGGTTTGGTTGATTCGCTTTTCCAGGCTCCAACGGGTACTGGTACTCACCACGCCATCATGAATTCCTATGAATACCTCAGCCAAGGTCTTCGCCAGTAAGTTGAACTGTGTGATCATCTTATCTAAAAGTTTATACTGCTGTTACAACTTGTATGATCATATTGTCTAAATGGTTAAGTTGTTAGAGAGAACACACTTTTATTTACTTGATTATATGTTTTGACATTCGATTAGATATAACTTGGACAACAAGTTGGACGGATTCTACATCGCTCCTGCTTTCATGGACAAGCTTGTTGTTCACATCACCAAGAACTTCTTAACGTTGCCCAACATCAAGGTCTGTTAAAGAGATGTTTGTTAAAAAATTCTGGCTTAAGTAGTGTTTTGTGTAAAAGAAGATTTGAACTTTGTTTATGTTTCTTACAGGTTCCACTTATTTTGGGTGTTTGGGGAGGAAAAGGTCAAGGTAAATCATTCCAATGTGAGCTTGTCTTCAGAAAGATGGGAATCAAGTGAGTATTGCCTTAAATTACATACTATCTTTATTCGGATTTTTTTTTCCGAGGAAATGGACTACAGTTACTTCTAAAACAATCTCTCTACCTACATGAGATAGGGATAAGGTCTCTATATATACGGTTCACCCTCTCCAAACCTCACTTGTGGGATTTAATTTCACTAAGAATGTTGTTGCTGTATATAGACTAAAGTTACTTTTGAAAGAACCTATCTTACCTTCACGAGATAGGGGTAAAATCTGCATACAGTTTACCCTCTCTAGACCCCACTTGTAGGATTTCACTGAGAATGTTATTGTTGTAAGTGGATTAAAGTCTTCCGAATCATCCTTTCTAGCTACCTCCACGAGGTAGGTGTAAGGTCTACGTATAGTCTACTCTCTCCAAACTCGAATTGTGGGATTTCACTGAAAGTTACTTTAGAAACAACCTCTCTACCTTCACGAGCTAGAGGTAAGATTTGCATACAATCTTACCTCTCCAGACCTCACTTGTGGGATTTCAATGAGAATGTTGTTGTAAAAGTTACTTACAATGTTTGGTTTATTAAACTTGCAGCCCAATTATGATGAGTGCTGGAGAATTAGAAAGTGGAAATGCAGGAGAGCCAGCTAAATTGATCAGGCAAAGGTACAGAGAGGCCGCGGAAATCATCAGGAAGGGAAACATGTGTTGCCTCTTCATCAACGATCTTGATGCAGGAGCC</genome_strand>
        <mrna_strand>TGTTGTTGGAACTTCAGTTCCACCAACAGCCTTCTTTGGCAAAACCTTAAAGAAAGTGAACAACAAAGTTTCCAGCACAAACATCTCAAACAAGAACTTGAGGCTGGTTGCTCAAGAAAAAGAAATTGATGAGAAGAAACAGACTGATGGGGACAGATGGAAGGGACTTGTTAACGATGTGTCCGATGATCAACAAGACATTGCAAGGGGTAAAGGTTTGGTTGATTCGCTTTTCCAGGCTCCAACGGGTACTGGTACTCACCACGCCATCATGAATTCCTATGAATACCTCAGCCAAGGTCTTCGCCA...........................................................................................................................................ATATAACTTGGACAACAAGTTGGACGGATTCTACATCGCTCCTGCTTTCATGGACAAGCTTGTTGTTCACATCACCAAGAACTTCTTAACGTTGCCCAACATCAAG.........................................................................................GTTCCACTTATTTTGGGTGTTTGGGGAGGAAAAGGTCAAGGTAAATCATTCCAATGTGAGCTTGTCTTCAGAAAGATGGGAATCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAATTATGATGAGTGCTGGAGAATTAGAAAGTGGAAATGCAGGAGAGCCAGCTAAATTGATCAGGCAAAGGTACAGAGAGGCCGCGGAAATCATCAGGAAAGGAAACATGTGTTGCCTCTTCATCAACGATCTTGATGCAGGAGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E326153" ref_strand="+" ref_description="SGN-E326153 [cTOC-16-C21]">
      <seq>tgttgttggaacttcagttccaccaacagccttctttggcaaaaccttaaagaaagtgaacaacaaagtttccagcacaaacatctcaaacaagaacttgaggctggttgctcaagaaaaagaaattgatgagaagaaacagactgatggggacagatggaagggacttgttaacgatgtgtccgatgatcaacaagacattgcaaggggtaaaggtttggttgattcgcttttccaggctccaacgggtactggtactcaccacgccatcatgaattcctatgaatacctcagccaaggtcttcgccaatataacttggacaacaagttggacggattctacatcgctcctgctttcatggacaagcttgttgttcacatcaccaagaacttcttaacgttgcccaacatcaaggttccacttattttgggtgtttggggaggaaaaggtcaaggtaaatcattccaatgtgagcttgtcttcagaaagatgggaatcaacccaattatgatgagtgctggagaattaaaaagtggaaatgcaagagagccagctaaattgatcaggcaaaggtacagagaggccgcggaaatcatcangaagggaaacatgtgttgcctcttcatcaacgatcttgatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="42015" stop="44049"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42315" g_stop="42623" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="309" r_length="309" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42624" i_stop="42762" i_length="139">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42763" g_stop="42868" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="415" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42869" i_stop="42957" i_length="89">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42958" g_stop="43043" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="501" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43044" i_stop="43607" i_length="564">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43608" g_stop="43749" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="643" r_length="142" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E326153" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326153" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42315" e_stop="42623"/>
          <exon e_start="42763" e_stop="42868"/>
          <exon e_start="42958" e_stop="43043"/>
          <exon e_start="43608" e_stop="43749"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTGTTGGAACTTCAGTTCCACCAACAGCCTTCTTTGGCAAAACCTTAAAGAAAGTGAACAACAAAGTTTCCAGCACAAACATCTCAAACAAGAACTTGAGGCTGGTTGCTCAAGAAAAAGAAATTGATGAGAAGAAACAGACTGATGGGGACAGATGGAAGGGACTTGTTAACGATGTGTCCGATGATCAACAAGACATTGCAAGGGGTAAAGGTTTGGTTGATTCGCTTTTCCAGGCTCCAACGGGTACTGGTACTCACCACGCCATCATGAATTCCTATGAATACCTCAGCCAAGGTCTTCGCCAGTAAGTTGAACTGTGTGATCATCTTATCTAAAAGTTTATACTGCTGTTACAACTTGTATGATCATATTGTCTAAATGGTTAAGTTGTTAGAGAGAACACACTTTTATTTACTTGATTATATGTTTTGACATTCGATTAGATATAACTTGGACAACAAGTTGGACGGATTCTACATCGCTCCTGCTTTCATGGACAAGCTTGTTGTTCACATCACCAAGAACTTCTTAACGTTGCCCAACATCAAGGTCTGTTAAAGAGATGTTTGTTAAAAAATTCTGGCTTAAGTAGTGTTTTGTGTAAAAGAAGATTTGAACTTTGTTTATGTTTCTTACAGGTTCCACTTATTTTGGGTGTTTGGGGAGGAAAAGGTCAAGGTAAATCATTCCAATGTGAGCTTGTCTTCAGAAAGATGGGAATCAAGTGAGTATTGCCTTAAATTACATACTATCTTTATTCGGATTTTTTTTTCCGAGGAAATGGACTACAGTTACTTCTAAAACAATCTCTCTACCTACATGAGATAGGGATAAGGTCTCTATATATACGGTTCACCCTCTCCAAACCTCACTTGTGGGATTTAATTTCACTAAGAATGTTGTTGCTGTATATAGACTAAAGTTACTTTTGAAAGAACCTATCTTACCTTCACGAGATAGGGGTAAAATCTGCATACAGTTTACCCTCTCTAGACCCCACTTGTAGGATTTCACTGAGAATGTTATTGTTGTAAGTGGATTAAAGTCTTCCGAATCATCCTTTCTAGCTACCTCCACGAGGTAGGTGTAAGGTCTACGTATAGTCTACTCTCTCCAAACTCGAATTGTGGGATTTCACTGAAAGTTACTTTAGAAACAACCTCTCTACCTTCACGAGCTAGAGGTAAGATTTGCATACAATCTTACCTCTCCAGACCTCACTTGTGGGATTTCAATGAGAATGTTGTTGTAAAAGTTACTTACAATGTTTGGTTTATTAAACTTGCAGCCCAATTATGATGAGTGCTGGAGAATTAGAAAGTGGAAATGCAGGAGAGCCAGCTAAATTGATCAGGCAAAGGTACAGAGAGGCCGCGGAAATCATCAGGAAGGGAAACATGTGTTGCCTCTTCATCAACGATCTTGATGCA</genome_strand>
        <mrna_strand>TGTTGTTGGAACTTCAGTTCCACCAACAGCCTTCTTTGGCAAAACCTTAAAGAAAGTGAACAACAAAGTTTCCAGCACAAACATCTCAAACAAGAACTTGAGGCTGGTTGCTCAAGAAAAAGAAATTGATGAGAAGAAACAGACTGATGGGGACAGATGGAAGGGACTTGTTAACGATGTGTCCGATGATCAACAAGACATTGCAAGGGGTAAAGGTTTGGTTGATTCGCTTTTCCAGGCTCCAACGGGTACTGGTACTCACCACGCCATCATGAATTCCTATGAATACCTCAGCCAAGGTCTTCGCCA...........................................................................................................................................ATATAACTTGGACAACAAGTTGGACGGATTCTACATCGCTCCTGCTTTCATGGACAAGCTTGTTGTTCACATCACCAAGAACTTCTTAACGTTGCCCAACATCAAG.........................................................................................GTTCCACTTATTTTGGGTGTTTGGGGAGGAAAAGGTCAAGGTAAATCATTCCAATGTGAGCTTGTCTTCAGAAAGATGGGAATCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAATTATGATGAGTGCTGGAGAATTAAAAAGTGGAAATGCAAGAGAGCCAGCTAAATTGATCAGGCAAAGGTACAGAGAGGCCGCGGAAATCATCANGAAGGGAAACATGTGTTGCCTCTTCATCAACGATCTTGATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E371573" ref_strand="+" ref_description="SGN-E371573 [TUS-29-E8]">
      <seq>aagaacttgaggctggttgctcaagaaaaagaaattgatgagaagaaacagactgatggggacagatggaagggacttgttaacgatgtgtccgatgatcaacaagacattgcaaggggtaaaggtttggttgattcgcttttccaggctccaacgggtactggtactcaccacgccatcatgaattcctatgaatacctcagccaaggtcttcgccaatataacttggacaacaagttggacggattctacatcgctcctgctttcatggacaagcttgttgttcacatcaccaagaacttcttaacgttgtccaacatcaaggttccacttattttgggtgtttggggaggaaaaggtcaaggtaaatcattccaatgtgagcttgtcttcagaaagatgggaatcaacccaattatgatgagtgctggagaattagaaagtggaaatgcaggagagccagctaaattgatcaggcaaaggtacagagaggccgcggaaatcatcaggaagggaaacatgtgttgcctcttcatcaacgatcttgatgcaggagccggtagaatgggtggaactacacaatacactgtcaacaaccaaatggtgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="42106" stop="44105"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42406" g_stop="42623" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42624" i_stop="42762" i_length="139">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42763" g_stop="42868" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="324" r_length="106" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42869" i_stop="42957" i_length="89">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42958" g_stop="43043" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="410" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43044" i_stop="43607" i_length="564">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43608" g_stop="43805" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="608" r_length="198" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E371573" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371573" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42406" e_stop="42623"/>
          <exon e_start="42763" e_stop="42868"/>
          <exon e_start="42958" e_stop="43043"/>
          <exon e_start="43608" e_stop="43805"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAACTTGAGGCTGGTTGCTCAAGAAAAAGAAATTGATGAGAAGAAACAGACTGATGGGGACAGATGGAAGGGACTTGTTAACGATGTGTCCGATGATCAACAAGACATTGCAAGGGGTAAAGGTTTGGTTGATTCGCTTTTCCAGGCTCCAACGGGTACTGGTACTCACCACGCCATCATGAATTCCTATGAATACCTCAGCCAAGGTCTTCGCCAGTAAGTTGAACTGTGTGATCATCTTATCTAAAAGTTTATACTGCTGTTACAACTTGTATGATCATATTGTCTAAATGGTTAAGTTGTTAGAGAGAACACACTTTTATTTACTTGATTATATGTTTTGACATTCGATTAGATATAACTTGGACAACAAGTTGGACGGATTCTACATCGCTCCTGCTTTCATGGACAAGCTTGTTGTTCACATCACCAAGAACTTCTTAACGTTGCCCAACATCAAGGTCTGTTAAAGAGATGTTTGTTAAAAAATTCTGGCTTAAGTAGTGTTTTGTGTAAAAGAAGATTTGAACTTTGTTTATGTTTCTTACAGGTTCCACTTATTTTGGGTGTTTGGGGAGGAAAAGGTCAAGGTAAATCATTCCAATGTGAGCTTGTCTTCAGAAAGATGGGAATCAAGTGAGTATTGCCTTAAATTACATACTATCTTTATTCGGATTTTTTTTTCCGAGGAAATGGACTACAGTTACTTCTAAAACAATCTCTCTACCTACATGAGATAGGGATAAGGTCTCTATATATACGGTTCACCCTCTCCAAACCTCACTTGTGGGATTTAATTTCACTAAGAATGTTGTTGCTGTATATAGACTAAAGTTACTTTTGAAAGAACCTATCTTACCTTCACGAGATAGGGGTAAAATCTGCATACAGTTTACCCTCTCTAGACCCCACTTGTAGGATTTCACTGAGAATGTTATTGTTGTAAGTGGATTAAAGTCTTCCGAATCATCCTTTCTAGCTACCTCCACGAGGTAGGTGTAAGGTCTACGTATAGTCTACTCTCTCCAAACTCGAATTGTGGGATTTCACTGAAAGTTACTTTAGAAACAACCTCTCTACCTTCACGAGCTAGAGGTAAGATTTGCATACAATCTTACCTCTCCAGACCTCACTTGTGGGATTTCAATGAGAATGTTGTTGTAAAAGTTACTTACAATGTTTGGTTTATTAAACTTGCAGCCCAATTATGATGAGTGCTGGAGAATTAGAAAGTGGAAATGCAGGAGAGCCAGCTAAATTGATCAGGCAAAGGTACAGAGAGGCCGCGGAAATCATCAGGAAGGGAAACATGTGTTGCCTCTTCATCAACGATCTTGATGCAGGAGCCGGTAGAATGGGTGGAACTACACAATACACTGTCAACAACCAAATGGTGAA</genome_strand>
        <mrna_strand>AAGAACTTGAGGCTGGTTGCTCAAGAAAAAGAAATTGATGAGAAGAAACAGACTGATGGGGACAGATGGAAGGGACTTGTTAACGATGTGTCCGATGATCAACAAGACATTGCAAGGGGTAAAGGTTTGGTTGATTCGCTTTTCCAGGCTCCAACGGGTACTGGTACTCACCACGCCATCATGAATTCCTATGAATACCTCAGCCAAGGTCTTCGCCA...........................................................................................................................................ATATAACTTGGACAACAAGTTGGACGGATTCTACATCGCTCCTGCTTTCATGGACAAGCTTGTTGTTCACATCACCAAGAACTTCTTAACGTTGTCCAACATCAAG.........................................................................................GTTCCACTTATTTTGGGTGTTTGGGGAGGAAAAGGTCAAGGTAAATCATTCCAATGTGAGCTTGTCTTCAGAAAGATGGGAATCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAATTATGATGAGTGCTGGAGAATTAGAAAGTGGAAATGCAGGAGAGCCAGCTAAATTGATCAGGCAAAGGTACAGAGAGGCCGCGGAAATCATCAGGAAGGGAAACATGTGTTGCCTCTTCATCAACGATCTTGATGCAGGAGCCGGTAGAATGGGTGGAACTACACAATACACTGTCAACAACCAAATGGTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E280632" ref_strand="+" ref_description="SGN-E280632 [cLER-1-D16]">
      <seq>aagaacttgaggctggttgctcaagaaaaagaaattgatgagaagaaacagactgatggggacagatggaagggacttgttaacgatgtgtccgatgatcaacaagacattgcaaggggtaaaggtttggttgattcgcttttccaggctccaacgggtactggtactcaccacgccatcatgaattcctatgaatacctcagccaaggtcttcgccaatataacttggacaacaagttggacggattctacatcgctcctgctttcatggacaagcttgttgttcacatcaccaagaacttcttaacgttgtccaacatcaaggttccacttattttgggtgtttggggaggaaaaggtcaaggtaaatcattccaatgtgagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="42106" stop="43318"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42406" g_stop="42623" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42624" i_stop="42762" i_length="139">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42763" g_stop="42868" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="324" r_length="106" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42869" i_stop="42957" i_length="89">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42958" g_stop="43018" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="385" r_length="61" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E280632" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E280632" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42406" e_stop="42623"/>
          <exon e_start="42763" e_stop="42868"/>
          <exon e_start="42958" e_stop="43018"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAACTTGAGGCTGGTTGCTCAAGAAAAAGAAATTGATGAGAAGAAACAGACTGATGGGGACAGATGGAAGGGACTTGTTAACGATGTGTCCGATGATCAACAAGACATTGCAAGGGGTAAAGGTTTGGTTGATTCGCTTTTCCAGGCTCCAACGGGTACTGGTACTCACCACGCCATCATGAATTCCTATGAATACCTCAGCCAAGGTCTTCGCCAGTAAGTTGAACTGTGTGATCATCTTATCTAAAAGTTTATACTGCTGTTACAACTTGTATGATCATATTGTCTAAATGGTTAAGTTGTTAGAGAGAACACACTTTTATTTACTTGATTATATGTTTTGACATTCGATTAGATATAACTTGGACAACAAGTTGGACGGATTCTACATCGCTCCTGCTTTCATGGACAAGCTTGTTGTTCACATCACCAAGAACTTCTTAACGTTGCCCAACATCAAGGTCTGTTAAAGAGATGTTTGTTAAAAAATTCTGGCTTAAGTAGTGTTTTGTGTAAAAGAAGATTTGAACTTTGTTTATGTTTCTTACAGGTTCCACTTATTTTGGGTGTTTGGGGAGGAAAAGGTCAAGGTAAATCATTCCAATGTGAGC</genome_strand>
        <mrna_strand>AAGAACTTGAGGCTGGTTGCTCAAGAAAAAGAAATTGATGAGAAGAAACAGACTGATGGGGACAGATGGAAGGGACTTGTTAACGATGTGTCCGATGATCAACAAGACATTGCAAGGGGTAAAGGTTTGGTTGATTCGCTTTTCCAGGCTCCAACGGGTACTGGTACTCACCACGCCATCATGAATTCCTATGAATACCTCAGCCAAGGTCTTCGCCA...........................................................................................................................................ATATAACTTGGACAACAAGTTGGACGGATTCTACATCGCTCCTGCTTTCATGGACAAGCTTGTTGTTCACATCACCAAGAACTTCTTAACGTTGTCCAACATCAAG.........................................................................................GTTCCACTTATTTTGGGTGTTTGGGGAGGAAAAGGTCAAGGTAAATCATTCCAATGTGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E282557" ref_strand="+" ref_description="SGN-E282557 [cLER-18-N5]">
      <seq>gacattgcaaggggtaagggtctggttgacagtcttttccaggctcctactggtactggtactcaccacgccatcatgaattcctacgaatacgtcagccaggctcttaaaacgtaccaattggacaacaaattggacggtttctacattgctcctgctttcatggacaaacttgttgttcacatcaccaagaacttcttgacattgcccaacatcaaggttccactcatcttgggtgtatggggaggcaaaggtcaaggtaaatcattccaatgtgagcttgtcttcagaaagatgggaatcaaccccattatgatgagtgccggagaattggaaagtggaaatgcaggagagccagctaaattgattaggcaaaggtacagagaggcagctgaaatcatcaggaaaggaaacatgtgttgtctcttcatcaacgatctcgatgcaggagctggtagaatgggtggaactacccaatacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="42211" stop="44084"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42511" g_stop="42623" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="0.850"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42624" i_stop="42762" i_length="139">
            <donor d_prob="0.998" d_score="0.82"/>
            <acceptor a_prob="0.989" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42763" g_stop="42868" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="219" r_length="106" r_score="0.906"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42869" i_stop="42957" i_length="89">
            <donor d_prob="0.983" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42958" g_stop="43043" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="305" r_length="86" r_score="0.953"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43044" i_stop="43607" i_length="564">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43608" g_stop="43784" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="482" r_length="177" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E282557" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282557" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42511" e_stop="42623"/>
          <exon e_start="42763" e_stop="42868"/>
          <exon e_start="42958" e_stop="43043"/>
          <exon e_start="43608" e_stop="43784"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACATTGCAAGGGGTAAAGGTTTGGTTGATTCGCTTTTCCAGGCTCCAACGGGTACTGGTACTCACCACGCCATCATGAATTCCTATGAATACCTCAGCCAAGGTCTTCGCCAGTAAGTTGAACTGTGTGATCATCTTATCTAAAAGTTTATACTGCTGTTACAACTTGTATGATCATATTGTCTAAATGGTTAAGTTGTTAGAGAGAACACACTTTTATTTACTTGATTATATGTTTTGACATTCGATTAGATATAACTTGGACAACAAGTTGGACGGATTCTACATCGCTCCTGCTTTCATGGACAAGCTTGTTGTTCACATCACCAAGAACTTCTTAACGTTGCCCAACATCAAGGTCTGTTAAAGAGATGTTTGTTAAAAAATTCTGGCTTAAGTAGTGTTTTGTGTAAAAGAAGATTTGAACTTTGTTTATGTTTCTTACAGGTTCCACTTATTTTGGGTGTTTGGGGAGGAAAAGGTCAAGGTAAATCATTCCAATGTGAGCTTGTCTTCAGAAAGATGGGAATCAAGTGAGTATTGCCTTAAATTACATACTATCTTTATTCGGATTTTTTTTTCCGAGGAAATGGACTACAGTTACTTCTAAAACAATCTCTCTACCTACATGAGATAGGGATAAGGTCTCTATATATACGGTTCACCCTCTCCAAACCTCACTTGTGGGATTTAATTTCACTAAGAATGTTGTTGCTGTATATAGACTAAAGTTACTTTTGAAAGAACCTATCTTACCTTCACGAGATAGGGGTAAAATCTGCATACAGTTTACCCTCTCTAGACCCCACTTGTAGGATTTCACTGAGAATGTTATTGTTGTAAGTGGATTAAAGTCTTCCGAATCATCCTTTCTAGCTACCTCCACGAGGTAGGTGTAAGGTCTACGTATAGTCTACTCTCTCCAAACTCGAATTGTGGGATTTCACTGAAAGTTACTTTAGAAACAACCTCTCTACCTTCACGAGCTAGAGGTAAGATTTGCATACAATCTTACCTCTCCAGACCTCACTTGTGGGATTTCAATGAGAATGTTGTTGTAAAAGTTACTTACAATGTTTGGTTTATTAAACTTGCAGCCCAATTATGATGAGTGCTGGAGAATTAGAAAGTGGAAATGCAGGAGAGCCAGCTAAATTGATCAGGCAAAGGTACAGAGAGGCCGCGGAAATCATCAGGAAGGGAAACATGTGTTGCCTCTTCATCAACGATCTTGATGCAGGAGCCGGTAGAATGGGTGGAACTACACAATACAC</genome_strand>
        <mrna_strand>GACATTGCAAGGGGTAAGGGTCTGGTTGACAGTCTTTTCCAGGCTCCTACTGGTACTGGTACTCACCACGCCATCATGAATTCCTACGAATACGTCAGCCAGGCTCTTAAAAC...........................................................................................................................................GTACCAATTGGACAACAAATTGGACGGTTTCTACATTGCTCCTGCTTTCATGGACAAACTTGTTGTTCACATCACCAAGAACTTCTTGACATTGCCCAACATCAAG.........................................................................................GTTCCACTCATCTTGGGTGTATGGGGAGGCAAAGGTCAAGGTAAATCATTCCAATGTGAGCTTGTCTTCAGAAAGATGGGAATCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCATTATGATGAGTGCCGGAGAATTGGAAAGTGGAAATGCAGGAGAGCCAGCTAAATTGATTAGGCAAAGGTACAGAGAGGCAGCTGAAATCATCAGGAAAGGAAACATGTGTTGTCTCTTCATCAACGATCTCGATGCAGGAGCTGGTAGAATGGGTGGAACTACCCAATACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E251279" ref_strand="+" ref_description="SGN-E251279 [cLEG-10-L15]">
      <seq>tctggttgacagtcttttccatgctcctactggtactggtactcaccacgccatcatgaattcctacgaatacgtcagccaggctcttaaaacgtaccaattggacaacaaattggacggtttctacattgctcctgctttcatggacaaacttgttgttcacatcaccaagaacttcttgacattgcccaacatcaaggttccactcatcttgggtgtatggggaggcaaaggtcaaggtaaatcattccaatgtgagcttgtcttcagaaagatgggaatcaaccccattatgatgagtgccggagaattggaaagtggaaatgcaggagagccagctaaattgattaggcaaaggtacagagaggcagctgaaatcatcaggaaaggaaacatgtgttggctcttcatcaacgatctcgatgcaagagctggtagaatgggtggaactacccaatacaccgtcaacaaccagatggtgaatgccaccctcatgaacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="42244" stop="44124"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42531" g_stop="42623" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="0.817"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42624" i_stop="42762" i_length="139">
            <donor d_prob="0.998" d_score="0.82"/>
            <acceptor a_prob="0.989" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42763" g_stop="42868" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="199" r_length="106" r_score="0.906"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42869" i_stop="42957" i_length="89">
            <donor d_prob="0.983" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42958" g_stop="43043" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="285" r_length="86" r_score="0.953"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43044" i_stop="43607" i_length="564">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43608" g_stop="43824" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="502" r_length="217" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E251279" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E251279" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42531" e_stop="42623"/>
          <exon e_start="42763" e_stop="42868"/>
          <exon e_start="42958" e_stop="43043"/>
          <exon e_start="43608" e_stop="43824"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGTTGATTCGCTTTTCCAGGCTCCAACGGGTACTGGTACTCACCACGCCATCATGAATTCCTATGAATACCTCAGCCAAGGTCTTCGCCAGTAAGTTGAACTGTGTGATCATCTTATCTAAAAGTTTATACTGCTGTTACAACTTGTATGATCATATTGTCTAAATGGTTAAGTTGTTAGAGAGAACACACTTTTATTTACTTGATTATATGTTTTGACATTCGATTAGATATAACTTGGACAACAAGTTGGACGGATTCTACATCGCTCCTGCTTTCATGGACAAGCTTGTTGTTCACATCACCAAGAACTTCTTAACGTTGCCCAACATCAAGGTCTGTTAAAGAGATGTTTGTTAAAAAATTCTGGCTTAAGTAGTGTTTTGTGTAAAAGAAGATTTGAACTTTGTTTATGTTTCTTACAGGTTCCACTTATTTTGGGTGTTTGGGGAGGAAAAGGTCAAGGTAAATCATTCCAATGTGAGCTTGTCTTCAGAAAGATGGGAATCAAGTGAGTATTGCCTTAAATTACATACTATCTTTATTCGGATTTTTTTTTCCGAGGAAATGGACTACAGTTACTTCTAAAACAATCTCTCTACCTACATGAGATAGGGATAAGGTCTCTATATATACGGTTCACCCTCTCCAAACCTCACTTGTGGGATTTAATTTCACTAAGAATGTTGTTGCTGTATATAGACTAAAGTTACTTTTGAAAGAACCTATCTTACCTTCACGAGATAGGGGTAAAATCTGCATACAGTTTACCCTCTCTAGACCCCACTTGTAGGATTTCACTGAGAATGTTATTGTTGTAAGTGGATTAAAGTCTTCCGAATCATCCTTTCTAGCTACCTCCACGAGGTAGGTGTAAGGTCTACGTATAGTCTACTCTCTCCAAACTCGAATTGTGGGATTTCACTGAAAGTTACTTTAGAAACAACCTCTCTACCTTCACGAGCTAGAGGTAAGATTTGCATACAATCTTACCTCTCCAGACCTCACTTGTGGGATTTCAATGAGAATGTTGTTGTAAAAGTTACTTACAATGTTTGGTTTATTAAACTTGCAGCCCAATTATGATGAGTGCTGGAGAATTAGAAAGTGGAAATGCAGGAGAGCCAGCTAAATTGATCAGGCAAAGGTACAGAGAGGCCGCGGAAATCATCAGGAAGGGAAACATGTGTTGCCTCTTCATCAACGATCTTGATGCAGGAGCCGGTAGAATGGGTGGAACTACACAATACACTGTCAACAACCAAATGGTGAATGCTACACTCATGAACATT</genome_strand>
        <mrna_strand>TCTGGTTGACAGTCTTTTCCATGCTCCTACTGGTACTGGTACTCACCACGCCATCATGAATTCCTACGAATACGTCAGCCAGGCTCTTAAAAC...........................................................................................................................................GTACCAATTGGACAACAAATTGGACGGTTTCTACATTGCTCCTGCTTTCATGGACAAACTTGTTGTTCACATCACCAAGAACTTCTTGACATTGCCCAACATCAAG.........................................................................................GTTCCACTCATCTTGGGTGTATGGGGAGGCAAAGGTCAAGGTAAATCATTCCAATGTGAGCTTGTCTTCAGAAAGATGGGAATCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCATTATGATGAGTGCCGGAGAATTGGAAAGTGGAAATGCAGGAGAGCCAGCTAAATTGATTAGGCAAAGGTACAGAGAGGCAGCTGAAATCATCAGGAAAGGAAACATGTGTTGGCTCTTCATCAACGATCTCGATGCAAGAGCTGGTAGAATGGGTGGAACTACCCAATACACCGTCAACAACCAGATGGTGAATGCCACCCTCATGAACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E408837" ref_strand="+" ref_description="SGN-E408837 [PPI-12-I6]">
      <seq>agtcttttccaggctcctaccggtactggtactcaccacgccattatgaattcctatgaatacgtcagccaggctcttaaaacgtaccaaatggacaacaaattggacggtttctacatcgccccttctttcatggacaaacttgttgttcacatcaccaagaacttcttgtcattgcccaacatcaaggttccactcatcttgggtgtatggggaggcaaaggtcaaggtaaatcattccaatgtgagcttgtcttcagaaagatgggaatcaaccccattatgatgagtgctggagaattggaaagtggaaatgcaggagagccagcaaaattgattaggcaaaggtacagagaggcagctgaaatcatcaggaaaggaaacatgtgttgtctcttcatcaacgatctcgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="42244" stop="44048"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42541" g_stop="42623" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="0.831"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42624" i_stop="42762" i_length="139">
            <donor d_prob="0.998" d_score="0.82"/>
            <acceptor a_prob="0.989" a_score="0.82"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42763" g_stop="42868" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="189" r_length="106" r_score="0.877"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42869" i_stop="42957" i_length="89">
            <donor d_prob="0.983" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42958" g_stop="43043" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="275" r_length="86" r_score="0.953"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43044" i_stop="43607" i_length="564">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43608" g_stop="43748" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="416" r_length="141" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E408837" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E408837" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42541" e_stop="42623"/>
          <exon e_start="42763" e_stop="42868"/>
          <exon e_start="42958" e_stop="43043"/>
          <exon e_start="43608" e_stop="43748"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCTTTTCCAGGCTCCAACGGGTACTGGTACTCACCACGCCATCATGAATTCCTATGAATACCTCAGCCAAGGTCTTCGCCAGTAAGTTGAACTGTGTGATCATCTTATCTAAAAGTTTATACTGCTGTTACAACTTGTATGATCATATTGTCTAAATGGTTAAGTTGTTAGAGAGAACACACTTTTATTTACTTGATTATATGTTTTGACATTCGATTAGATATAACTTGGACAACAAGTTGGACGGATTCTACATCGCTCCTGCTTTCATGGACAAGCTTGTTGTTCACATCACCAAGAACTTCTTAACGTTGCCCAACATCAAGGTCTGTTAAAGAGATGTTTGTTAAAAAATTCTGGCTTAAGTAGTGTTTTGTGTAAAAGAAGATTTGAACTTTGTTTATGTTTCTTACAGGTTCCACTTATTTTGGGTGTTTGGGGAGGAAAAGGTCAAGGTAAATCATTCCAATGTGAGCTTGTCTTCAGAAAGATGGGAATCAAGTGAGTATTGCCTTAAATTACATACTATCTTTATTCGGATTTTTTTTTCCGAGGAAATGGACTACAGTTACTTCTAAAACAATCTCTCTACCTACATGAGATAGGGATAAGGTCTCTATATATACGGTTCACCCTCTCCAAACCTCACTTGTGGGATTTAATTTCACTAAGAATGTTGTTGCTGTATATAGACTAAAGTTACTTTTGAAAGAACCTATCTTACCTTCACGAGATAGGGGTAAAATCTGCATACAGTTTACCCTCTCTAGACCCCACTTGTAGGATTTCACTGAGAATGTTATTGTTGTAAGTGGATTAAAGTCTTCCGAATCATCCTTTCTAGCTACCTCCACGAGGTAGGTGTAAGGTCTACGTATAGTCTACTCTCTCCAAACTCGAATTGTGGGATTTCACTGAAAGTTACTTTAGAAACAACCTCTCTACCTTCACGAGCTAGAGGTAAGATTTGCATACAATCTTACCTCTCCAGACCTCACTTGTGGGATTTCAATGAGAATGTTGTTGTAAAAGTTACTTACAATGTTTGGTTTATTAAACTTGCAGCCCAATTATGATGAGTGCTGGAGAATTAGAAAGTGGAAATGCAGGAGAGCCAGCTAAATTGATCAGGCAAAGGTACAGAGAGGCCGCGGAAATCATCAGGAAGGGAAACATGTGTTGCCTCTTCATCAACGATCTTGATGC</genome_strand>
        <mrna_strand>AGTCTTTTCCAGGCTCCTACCGGTACTGGTACTCACCACGCCATTATGAATTCCTATGAATACGTCAGCCAGGCTCTTAAAAC...........................................................................................................................................GTACCAAATGGACAACAAATTGGACGGTTTCTACATCGCCCCTTCTTTCATGGACAAACTTGTTGTTCACATCACCAAGAACTTCTTGTCATTGCCCAACATCAAG.........................................................................................GTTCCACTCATCTTGGGTGTATGGGGAGGCAAAGGTCAAGGTAAATCATTCCAATGTGAGCTTGTCTTCAGAAAGATGGGAATCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCATTATGATGAGTGCTGGAGAATTGGAAAGTGGAAATGCAGGAGAGCCAGCAAAATTGATTAGGCAAAGGTACAGAGAGGCAGCTGAAATCATCAGGAAAGGAAACATGTGTTGTCTCTTCATCAACGATCTCGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E279591" ref_strand="+" ref_description="SGN-E279591 [cLER-5-L6]">
      <seq>tggtactggtactcaccacgccatcatgaattcctacgaatacgtcagccaggctcttaaaacgtaccaattggacaacaaattggacggtttctacattgctcctgctttcatggacaaacttgttgttcacatcaccaagaacttcttgacattgcccaacatcaaggttccactcatcttgggtgtatggggaggcaaaggtcaaggtaaatcattccaatgtgagcttgtcttcagaaagatgggaatcaaccccattatgatgagtgccggagaattggaaagtggaaatgcaggagagccagctaaattgattaggcaaaggtacagagaggcagctgaaatcatcaggaaaggaaacatgtgttgtctcttcatcaacgatctcgatgcangagctggtaacgacttctccacattgtatgctcctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="42262" stop="44233"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42561" g_stop="42623" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="0.841"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42624" i_stop="42762" i_length="139">
            <donor d_prob="0.998" d_score="0.82"/>
            <acceptor a_prob="0.989" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42763" g_stop="42868" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="169" r_length="106" r_score="0.906"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42869" i_stop="42957" i_length="89">
            <donor d_prob="0.983" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42958" g_stop="43043" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="255" r_length="86" r_score="0.953"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43044" i_stop="43607" i_length="564">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43608" g_stop="43754" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="402" r_length="147" r_score="0.932"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43755" i_stop="43901" i_length="147">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43902" g_stop="43933" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="434" r_length="32" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E279591" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279591" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42561" e_stop="42623"/>
          <exon e_start="42763" e_stop="42868"/>
          <exon e_start="42958" e_stop="43043"/>
          <exon e_start="43608" e_stop="43754"/>
          <exon e_start="43902" e_stop="43933"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTACTGGTACTCACCACGCCATCATGAATTCCTATGAATACCTCAGCCAAGGTCTTCGCCAGTAAGTTGAACTGTGTGATCATCTTATCTAAAAGTTTATACTGCTGTTACAACTTGTATGATCATATTGTCTAAATGGTTAAGTTGTTAGAGAGAACACACTTTTATTTACTTGATTATATGTTTTGACATTCGATTAGATATAACTTGGACAACAAGTTGGACGGATTCTACATCGCTCCTGCTTTCATGGACAAGCTTGTTGTTCACATCACCAAGAACTTCTTAACGTTGCCCAACATCAAGGTCTGTTAAAGAGATGTTTGTTAAAAAATTCTGGCTTAAGTAGTGTTTTGTGTAAAAGAAGATTTGAACTTTGTTTATGTTTCTTACAGGTTCCACTTATTTTGGGTGTTTGGGGAGGAAAAGGTCAAGGTAAATCATTCCAATGTGAGCTTGTCTTCAGAAAGATGGGAATCAAGTGAGTATTGCCTTAAATTACATACTATCTTTATTCGGATTTTTTTTTCCGAGGAAATGGACTACAGTTACTTCTAAAACAATCTCTCTACCTACATGAGATAGGGATAAGGTCTCTATATATACGGTTCACCCTCTCCAAACCTCACTTGTGGGATTTAATTTCACTAAGAATGTTGTTGCTGTATATAGACTAAAGTTACTTTTGAAAGAACCTATCTTACCTTCACGAGATAGGGGTAAAATCTGCATACAGTTTACCCTCTCTAGACCCCACTTGTAGGATTTCACTGAGAATGTTATTGTTGTAAGTGGATTAAAGTCTTCCGAATCATCCTTTCTAGCTACCTCCACGAGGTAGGTGTAAGGTCTACGTATAGTCTACTCTCTCCAAACTCGAATTGTGGGATTTCACTGAAAGTTACTTTAGAAACAACCTCTCTACCTTCACGAGCTAGAGGTAAGATTTGCATACAATCTTACCTCTCCAGACCTCACTTGTGGGATTTCAATGAGAATGTTGTTGTAAAAGTTACTTACAATGTTTGGTTTATTAAACTTGCAGCCCAATTATGATGAGTGCTGGAGAATTAGAAAGTGGAAATGCAGGAGAGCCAGCTAAATTGATCAGGCAAAGGTACAGAGAGGCCGCGGAAATCATCAGGAAGGGAAACATGTGTTGCCTCTTCATCAACGATCTTGATGCAGGAGCCGGTAGAATGGGTGGAACTACACAATACACTGTCAACAACCAAATGGTGAATGCTACACTCATGAACATTGCTGATAACCCGACGAATGTCCAACTCCCCGGTATGTACAACAAGCAAGAGAATGCCAGGGTACCTATTATTGTCACTGGTAACGATTTCTCCACATTGTATGCACCTC</genome_strand>
        <mrna_strand>TGGTACTGGTACTCACCACGCCATCATGAATTCCTACGAATACGTCAGCCAGGCTCTTAAAAC...........................................................................................................................................GTACCAATTGGACAACAAATTGGACGGTTTCTACATTGCTCCTGCTTTCATGGACAAACTTGTTGTTCACATCACCAAGAACTTCTTGACATTGCCCAACATCAAG.........................................................................................GTTCCACTCATCTTGGGTGTATGGGGAGGCAAAGGTCAAGGTAAATCATTCCAATGTGAGCTTGTCTTCAGAAAGATGGGAATCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCATTATGATGAGTGCCGGAGAATTGGAAAGTGGAAATGCAGGAGAGCCAGCTAAATTGATTAGGCAAAGGTACAGAGAGGCAGCTGAAATCATCAGGAAAGGAAACATGTGTTGTCTCTTCATCAACGATCTCGATGCANGAGC...................................................................................................................................................TGGTAACGACTTCTCCACATTGTATGCTCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E473084" ref_strand="+" ref_description="SGN-E473084 [cSTB-31-G5]">
      <seq>ctcaccacgccattatgaattcctatgaatacgtcagccaggctcttaaaacgtaccaaatggacaacaaattggacggtttctacatcgccccttctttcatggacaaacttgttgttcacatcaccaagaacttcttgtcattgcccaacatcaaggttccactcatcttgggtgtatggggaggcaaaggtcaaggtaaatcattccaatgtgagcttgtcttcagaaagatgggaatcaaccccattatgatgagtgctggagaattggaaagtggaaatgcaggagagccagcaaaattgattaggcaaaggtacagagaggcagctgaaatcatcaggaaaggaaacatgtgttgtctcttcatcaacgatctcgatgcaggagctggtagaatgggtggaactacccaatacaccgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="42272" stop="44088"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42572" g_stop="42623" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="0.827"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42624" i_stop="42762" i_length="139">
            <donor d_prob="0.998" d_score="0.82"/>
            <acceptor a_prob="0.989" a_score="0.82"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42763" g_stop="42868" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="158" r_length="106" r_score="0.877"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42869" i_stop="42957" i_length="89">
            <donor d_prob="0.983" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42958" g_stop="43043" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="244" r_length="86" r_score="0.953"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43044" i_stop="43607" i_length="564">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43608" g_stop="43788" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="425" r_length="181" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E473084" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E473084" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42572" e_stop="42623"/>
          <exon e_start="42763" e_stop="42868"/>
          <exon e_start="42958" e_stop="43043"/>
          <exon e_start="43608" e_stop="43788"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCACCACGCCATCATGAATTCCTATGAATACCTCAGCCAAGGTCTTCGCCAGTAAGTTGAACTGTGTGATCATCTTATCTAAAAGTTTATACTGCTGTTACAACTTGTATGATCATATTGTCTAAATGGTTAAGTTGTTAGAGAGAACACACTTTTATTTACTTGATTATATGTTTTGACATTCGATTAGATATAACTTGGACAACAAGTTGGACGGATTCTACATCGCTCCTGCTTTCATGGACAAGCTTGTTGTTCACATCACCAAGAACTTCTTAACGTTGCCCAACATCAAGGTCTGTTAAAGAGATGTTTGTTAAAAAATTCTGGCTTAAGTAGTGTTTTGTGTAAAAGAAGATTTGAACTTTGTTTATGTTTCTTACAGGTTCCACTTATTTTGGGTGTTTGGGGAGGAAAAGGTCAAGGTAAATCATTCCAATGTGAGCTTGTCTTCAGAAAGATGGGAATCAAGTGAGTATTGCCTTAAATTACATACTATCTTTATTCGGATTTTTTTTTCCGAGGAAATGGACTACAGTTACTTCTAAAACAATCTCTCTACCTACATGAGATAGGGATAAGGTCTCTATATATACGGTTCACCCTCTCCAAACCTCACTTGTGGGATTTAATTTCACTAAGAATGTTGTTGCTGTATATAGACTAAAGTTACTTTTGAAAGAACCTATCTTACCTTCACGAGATAGGGGTAAAATCTGCATACAGTTTACCCTCTCTAGACCCCACTTGTAGGATTTCACTGAGAATGTTATTGTTGTAAGTGGATTAAAGTCTTCCGAATCATCCTTTCTAGCTACCTCCACGAGGTAGGTGTAAGGTCTACGTATAGTCTACTCTCTCCAAACTCGAATTGTGGGATTTCACTGAAAGTTACTTTAGAAACAACCTCTCTACCTTCACGAGCTAGAGGTAAGATTTGCATACAATCTTACCTCTCCAGACCTCACTTGTGGGATTTCAATGAGAATGTTGTTGTAAAAGTTACTTACAATGTTTGGTTTATTAAACTTGCAGCCCAATTATGATGAGTGCTGGAGAATTAGAAAGTGGAAATGCAGGAGAGCCAGCTAAATTGATCAGGCAAAGGTACAGAGAGGCCGCGGAAATCATCAGGAAGGGAAACATGTGTTGCCTCTTCATCAACGATCTTGATGCAGGAGCCGGTAGAATGGGTGGAACTACACAATACACTGTC</genome_strand>
        <mrna_strand>CTCACCACGCCATTATGAATTCCTATGAATACGTCAGCCAGGCTCTTAAAAC...........................................................................................................................................GTACCAAATGGACAACAAATTGGACGGTTTCTACATCGCCCCTTCTTTCATGGACAAACTTGTTGTTCACATCACCAAGAACTTCTTGTCATTGCCCAACATCAAG.........................................................................................GTTCCACTCATCTTGGGTGTATGGGGAGGCAAAGGTCAAGGTAAATCATTCCAATGTGAGCTTGTCTTCAGAAAGATGGGAATCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCATTATGATGAGTGCTGGAGAATTGGAAAGTGGAAATGCAGGAGAGCCAGCAAAATTGATTAGGCAAAGGTACAGAGAGGCAGCTGAAATCATCAGGAAAGGAAACATGTGTTGTCTCTTCATCAACGATCTCGATGCAGGAGCTGGTAGAATGGGTGGAACTACCCAATACACCGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E348970" ref_strand="+" ref_description="SGN-E348970 [cTOF-29-B1]">
      <seq>tgaattcctacgaatacgtcagccaggctcttaaaacgtaccaattggacaacaaattggacggtttctacattgctcctgctttcatggacaaacttgttgttcacatcaccaagaacttcttgacattgcccaacatcaaggttccactcatcttgggtgtatggggaggcaaaggtcaaggtaaatcattccaatgtgagcttgtcttcagaaagatgggaatcaaccccattatgatgagtgccggagaattggaaagtggaaatgcangagagccagctaaattgattaggcaaaggtacagagaggcagctgaaatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="42467" stop="44002"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42587" g_stop="42623" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="0.757"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42624" i_stop="42762" i_length="139">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.989" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42763" g_stop="42868" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="143" r_length="106" r_score="0.906"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42869" i_stop="42957" i_length="89">
            <donor d_prob="0.983" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42958" g_stop="43043" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="229" r_length="86" r_score="0.953"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43044" i_stop="43607" i_length="564">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43608" g_stop="43702" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="324" r_length="95" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E348970" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>324</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348970" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42587" e_stop="42623"/>
          <exon e_start="42763" e_stop="42868"/>
          <exon e_start="42958" e_stop="43043"/>
          <exon e_start="43608" e_stop="43702"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATTCCTATGAATACCTCAGCCAAGGTCTTCGCCAGTAAGTTGAACTGTGTGATCATCTTATCTAAAAGTTTATACTGCTGTTACAACTTGTATGATCATATTGTCTAAATGGTTAAGTTGTTAGAGAGAACACACTTTTATTTACTTGATTATATGTTTTGACATTCGATTAGATATAACTTGGACAACAAGTTGGACGGATTCTACATCGCTCCTGCTTTCATGGACAAGCTTGTTGTTCACATCACCAAGAACTTCTTAACGTTGCCCAACATCAAGGTCTGTTAAAGAGATGTTTGTTAAAAAATTCTGGCTTAAGTAGTGTTTTGTGTAAAAGAAGATTTGAACTTTGTTTATGTTTCTTACAGGTTCCACTTATTTTGGGTGTTTGGGGAGGAAAAGGTCAAGGTAAATCATTCCAATGTGAGCTTGTCTTCAGAAAGATGGGAATCAAGTGAGTATTGCCTTAAATTACATACTATCTTTATTCGGATTTTTTTTTCCGAGGAAATGGACTACAGTTACTTCTAAAACAATCTCTCTACCTACATGAGATAGGGATAAGGTCTCTATATATACGGTTCACCCTCTCCAAACCTCACTTGTGGGATTTAATTTCACTAAGAATGTTGTTGCTGTATATAGACTAAAGTTACTTTTGAAAGAACCTATCTTACCTTCACGAGATAGGGGTAAAATCTGCATACAGTTTACCCTCTCTAGACCCCACTTGTAGGATTTCACTGAGAATGTTATTGTTGTAAGTGGATTAAAGTCTTCCGAATCATCCTTTCTAGCTACCTCCACGAGGTAGGTGTAAGGTCTACGTATAGTCTACTCTCTCCAAACTCGAATTGTGGGATTTCACTGAAAGTTACTTTAGAAACAACCTCTCTACCTTCACGAGCTAGAGGTAAGATTTGCATACAATCTTACCTCTCCAGACCTCACTTGTGGGATTTCAATGAGAATGTTGTTGTAAAAGTTACTTACAATGTTTGGTTTATTAAACTTGCAGCCCAATTATGATGAGTGCTGGAGAATTAGAAAGTGGAAATGCAGGAGAGCCAGCTAAATTGATCAGGCAAAGGTACAGAGAGGCCGCGGAAATCA</genome_strand>
        <mrna_strand>TGAATTCCTACGAATACGTCAGCCAGGCTCTTAAAAC...........................................................................................................................................GTACCAATTGGACAACAAATTGGACGGTTTCTACATTGCTCCTGCTTTCATGGACAAACTTGTTGTTCACATCACCAAGAACTTCTTGACATTGCCCAACATCAAG.........................................................................................GTTCCACTCATCTTGGGTGTATGGGGAGGCAAAGGTCAAGGTAAATCATTCCAATGTGAGCTTGTCTTCAGAAAGATGGGAATCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCATTATGATGAGTGCCGGAGAATTGGAAAGTGGAAATGCANGAGAGCCAGCTAAATTGATTAGGCAAAGGTACAGAGAGGCAGCTGAAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E290356" ref_strand="+" ref_description="SGN-E290356 [cLES-20-A22]">
      <seq>aattcctacgaatacgtcagccaggctcttaaaacgtaccaattggacaacaaattggacggcttctacattgctcctgctttcatggacaaacttgatgttcacatcaccaagaacttcttgacattgcccaacatcaaggttccactcatcttgggtgtatggggaagcaaaagtcaaggtaaatcattccaatgtgagcttgtcttcagaacgatgggaatcaaccccattatgatgagtgccggagaattggaaagtggaaatgcaggacagccagctaaattgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="42467" stop="43970"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42589" g_stop="42623" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="0.743"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42624" i_stop="42762" i_length="139">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.989" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42763" g_stop="42868" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="141" r_length="106" r_score="0.896"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42869" i_stop="42957" i_length="89">
            <donor d_prob="0.983" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42958" g_stop="43043" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="227" r_length="86" r_score="0.919"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43044" i_stop="43607" i_length="564">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43608" g_stop="43670" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="290" r_length="63" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E290356" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>290</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290356" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42589" e_stop="42623"/>
          <exon e_start="42763" e_stop="42868"/>
          <exon e_start="42958" e_stop="43043"/>
          <exon e_start="43608" e_stop="43670"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCCTATGAATACCTCAGCCAAGGTCTTCGCCAGTAAGTTGAACTGTGTGATCATCTTATCTAAAAGTTTATACTGCTGTTACAACTTGTATGATCATATTGTCTAAATGGTTAAGTTGTTAGAGAGAACACACTTTTATTTACTTGATTATATGTTTTGACATTCGATTAGATATAACTTGGACAACAAGTTGGACGGATTCTACATCGCTCCTGCTTTCATGGACAAGCTTGTTGTTCACATCACCAAGAACTTCTTAACGTTGCCCAACATCAAGGTCTGTTAAAGAGATGTTTGTTAAAAAATTCTGGCTTAAGTAGTGTTTTGTGTAAAAGAAGATTTGAACTTTGTTTATGTTTCTTACAGGTTCCACTTATTTTGGGTGTTTGGGGAGGAAAAGGTCAAGGTAAATCATTCCAATGTGAGCTTGTCTTCAGAAAGATGGGAATCAAGTGAGTATTGCCTTAAATTACATACTATCTTTATTCGGATTTTTTTTTCCGAGGAAATGGACTACAGTTACTTCTAAAACAATCTCTCTACCTACATGAGATAGGGATAAGGTCTCTATATATACGGTTCACCCTCTCCAAACCTCACTTGTGGGATTTAATTTCACTAAGAATGTTGTTGCTGTATATAGACTAAAGTTACTTTTGAAAGAACCTATCTTACCTTCACGAGATAGGGGTAAAATCTGCATACAGTTTACCCTCTCTAGACCCCACTTGTAGGATTTCACTGAGAATGTTATTGTTGTAAGTGGATTAAAGTCTTCCGAATCATCCTTTCTAGCTACCTCCACGAGGTAGGTGTAAGGTCTACGTATAGTCTACTCTCTCCAAACTCGAATTGTGGGATTTCACTGAAAGTTACTTTAGAAACAACCTCTCTACCTTCACGAGCTAGAGGTAAGATTTGCATACAATCTTACCTCTCCAGACCTCACTTGTGGGATTTCAATGAGAATGTTGTTGTAAAAGTTACTTACAATGTTTGGTTTATTAAACTTGCAGCCCAATTATGATGAGTGCTGGAGAATTAGAAAGTGGAAATGCAGGAGAGCCAGCTAAATTGAT</genome_strand>
        <mrna_strand>AATTCCTACGAATACGTCAGCCAGGCTCTTAAAAC...........................................................................................................................................GTACCAATTGGACAACAAATTGGACGGCTTCTACATTGCTCCTGCTTTCATGGACAAACTTGATGTTCACATCACCAAGAACTTCTTGACATTGCCCAACATCAAG.........................................................................................GTTCCACTCATCTTGGGTGTATGGGGAAGCAAAAGTCAAGGTAAATCATTCCAATGTGAGCTTGTCTTCAGAACGATGGGAATCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCATTATGATGAGTGCCGGAGAATTGGAAAGTGGAAATGCAGGACAGCCAGCTAAATTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E699925" ref_strand="+" ref_description="SGN-E699925 [FA11CD11]">
      <seq>cgtaccaattggacaacaaattggacggtttctacattgctcctgctttcatggacaaacttgttgttcacatcaccaagaacttcttgacattgcccaacatcaaggttccactcatcttgggtgtatggggaggcaaaggtcaaggtaaatcattccaatgtgagcttgtcttcagaaagatgggaatcaaccccattatgatgagtgccggagaattggaaagtggaaatgcaggagagccagctaaattgattaggcaaaggtacagagaggcagctgaaatcatcaggaaaggaaacatgtgttgtctcttcatcaacgatctcgatgcaggagctggtagaatgggtggaactacccaatacaccgtcaacaaccagatggtgaatgccaccctcatgaacattgctgacaacccaacaaatgtccagctccctggtatgtacaacaagcaagagaacgccagggtacccattattgtcactggtaacgacttctccacattgtatgctcctcttatccgtgatggtcgtatggagaagttctactgggcaccaactagggaggatagaattggtgtttgcaagggtattttcagaactgacaacgtccctgaggaagctgttgtaaaaattgtcgattccttccctggacaatcctattgatttctttggtgctttgagggcacgagtatatgacgatgaagtgaggaaatgggtttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="42467" stop="44516"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42763" g_stop="42868" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="2" r_stop="107" r_length="106" r_score="0.906"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42869" i_stop="42957" i_length="89">
            <donor d_prob="0.983" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42958" g_stop="43043" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="193" r_length="86" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43044" i_stop="43607" i_length="564">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43608" g_stop="44080" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="667" r_length="474" r_score="0.905"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44081" i_stop="44160" i_length="80">
            <donor d_prob="0.980" d_score="0.76"/>
            <acceptor a_prob="0.973" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44161" g_stop="44218" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="668" r_stop="725" r_length="58" r_score="0.845"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E699925" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699925" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42763" e_stop="42868"/>
          <exon e_start="42958" e_stop="43043"/>
          <exon e_start="43608" e_stop="44080"/>
          <exon e_start="44161" e_stop="44218"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATAACTTGGACAACAAGTTGGACGGATTCTACATCGCTCCTGCTTTCATGGACAAGCTTGTTGTTCACATCACCAAGAACTTCTTAACGTTGCCCAACATCAAGGTCTGTTAAAGAGATGTTTGTTAAAAAATTCTGGCTTAAGTAGTGTTTTGTGTAAAAGAAGATTTGAACTTTGTTTATGTTTCTTACAGGTTCCACTTATTTTGGGTGTTTGGGGAGGAAAAGGTCAAGGTAAATCATTCCAATGTGAGCTTGTCTTCAGAAAGATGGGAATCAAGTGAGTATTGCCTTAAATTACATACTATCTTTATTCGGATTTTTTTTTCCGAGGAAATGGACTACAGTTACTTCTAAAACAATCTCTCTACCTACATGAGATAGGGATAAGGTCTCTATATATACGGTTCACCCTCTCCAAACCTCACTTGTGGGATTTAATTTCACTAAGAATGTTGTTGCTGTATATAGACTAAAGTTACTTTTGAAAGAACCTATCTTACCTTCACGAGATAGGGGTAAAATCTGCATACAGTTTACCCTCTCTAGACCCCACTTGTAGGATTTCACTGAGAATGTTATTGTTGTAAGTGGATTAAAGTCTTCCGAATCATCCTTTCTAGCTACCTCCACGAGGTAGGTGTAAGGTCTACGTATAGTCTACTCTCTCCAAACTCGAATTGTGGGATTTCACTGAAAGTTACTTTAGAAACAACCTCTCTACCTTCACGAGCTAGAGGTAAGATTTGCATACAATCTTACCTCTCCAGACCTCACTTGTGGGATTTCAATGAGAATGTTGTTGTAAAAGTTACTTACAATGTTTGGTTTATTAAACTTGCAGCCCAATTATGATGAGTGCTGGAGAATTAGAAAGTGGAAATGCAGGAGAGCCAGCTAAATTGATCAGGCAAAGGTACAGAGAGGCCGCGGAAATCATCAGGAAGGGAAACATGTGTTGCCTCTTCATCAACGATCTTGATGCAGGAGCCGGTAGAATGGGTGGAACTACACAATACACTGTCAACAACCAAATGGTGAATGCTACACTCATGAACATTGCTGATAACCCGACGAATGTCCAACTCCCCGGTATGTACAACAAGCAAGAGAATGCCAGGGTACCTATTATTGTCACTGGTAACGATTTCTCCACATTGTATGCACCTCTTATCCGTGATGGTCGTATGGAGAAATTCTACTGGGCACCAACTAGAGAAGACAGAATTGGTGTTTGCAAAGGTATTTTCAGGACTGACAGAGTTCCTGATGATGACATTGTCAAGATCGTCGATAGCTTCCCTGGACAAT-CTATTGGTAAGGAGACTAATAATATTTAACTTGTGTTAAAGATGAATAATAATATCAATGATCATATCTGAGTGGATCTTAAACAGATTTCTTCGGTGCTCTGAGGGCGAGAGTATACGATGATGAAGTGAGGAAATGGATTGG</genome_strand>
        <mrna_strand>GTACCAATTGGACAACAAATTGGACGGTTTCTACATTGCTCCTGCTTTCATGGACAAACTTGTTGTTCACATCACCAAGAACTTCTTGACATTGCCCAACATCAAG.........................................................................................GTTCCACTCATCTTGGGTGTATGGGGAGGCAAAGGTCAAGGTAAATCATTCCAATGTGAGCTTGTCTTCAGAAAGATGGGAATCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCATTATGATGAGTGCCGGAGAATTGGAAAGTGGAAATGCAGGAGAGCCAGCTAAATTGATTAGGCAAAGGTACAGAGAGGCAGCTGAAATCATCAGGAAAGGAAACATGTGTTGTCTCTTCATCAACGATCTCGATGCAGGAGCTGGTAGAATGGGTGGAACTACCCAATACACCGTCAACAACCAGATGGTGAATGCCACCCTCATGAACATTGCTGACAACCCAACAAATGTCCAGCTCCCTGGTATGTACAACAAGCAAGAGAACGCCAGGGTACCCATTATTGTCACTGGTAACGACTTCTCCACATTGTATGCTCCTCTTATCCGTGATGGTCGTATGGAGAAGTTCTACTGGGCACCAACTAGGGAGGATAGAATTGGTGTTTGCAAGGGTATTTTCAGAACTGACAACGTCCCTGAGGAAGCTGTTGTAAAAATTGTCGATTCCTTCCCTGGACAATCCTATTG................................................................................ATTTCTTTGGTGCTTTGAGGGCACGAGTATATGACGATGAAGTGAGGAAATGGGTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E344708" ref_strand="+" ref_description="SGN-E344708 [cTOF-21-C12]">
      <seq>tcagccaggctcttaaaacgtaccaattggacaacaaattggacggtttctacattgctcctgctttcatggacaaacttgttgttcacatcaccaagaacttcttgacattgcccaacatcaaggttccactcatcttgggtgtatggggaggcaaaggtcaaggtaaatcattccaatgtgagcttgtcttcagaaagatgggaatcaaccccattatgatgagtgccggagaattggaaagtggaaatgcaggagagccagctaaattgattaggcaaaggtacagagaggcagctgaaatcatcaggaaaggaaacatgtgttgtctcttcatcaacgatctcgatgcaggagctggtagaatgggtggaactacccaatacaccgtcaacaaccagatggtgaatgccaccctcatgaacattgctgacaacccaacaaatgtccagctccctggtatgtacaacaagcaagagaacgccagggtacccattattgtcactggtaacgacttctccacattgtatgctcctcttatccgtgatggtcgtatggagaagttctactgggcaccaactagggaggatagaattggtgtttgcaagggtattttcagaactgacaacgtnccctgagaagctgttgtaaagattgtcgattccttccctggacaatctattgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="42467" stop="44382"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42763" g_stop="42868" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="125" r_length="106" r_score="0.906"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42869" i_stop="42957" i_length="89">
            <donor d_prob="0.983" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42958" g_stop="43043" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="211" r_length="86" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43044" i_stop="43607" i_length="564">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43608" g_stop="44080" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="684" r_length="473" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E344708" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344708" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42763" e_stop="42868"/>
          <exon e_start="42958" e_stop="43043"/>
          <exon e_start="43608" e_stop="44080"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATAACTTGGACAACAAGTTGGACGGATTCTACATCGCTCCTGCTTTCATGGACAAGCTTGTTGTTCACATCACCAAGAACTTCTTAACGTTGCCCAACATCAAGGTCTGTTAAAGAGATGTTTGTTAAAAAATTCTGGCTTAAGTAGTGTTTTGTGTAAAAGAAGATTTGAACTTTGTTTATGTTTCTTACAGGTTCCACTTATTTTGGGTGTTTGGGGAGGAAAAGGTCAAGGTAAATCATTCCAATGTGAGCTTGTCTTCAGAAAGATGGGAATCAAGTGAGTATTGCCTTAAATTACATACTATCTTTATTCGGATTTTTTTTTCCGAGGAAATGGACTACAGTTACTTCTAAAACAATCTCTCTACCTACATGAGATAGGGATAAGGTCTCTATATATACGGTTCACCCTCTCCAAACCTCACTTGTGGGATTTAATTTCACTAAGAATGTTGTTGCTGTATATAGACTAAAGTTACTTTTGAAAGAACCTATCTTACCTTCACGAGATAGGGGTAAAATCTGCATACAGTTTACCCTCTCTAGACCCCACTTGTAGGATTTCACTGAGAATGTTATTGTTGTAAGTGGATTAAAGTCTTCCGAATCATCCTTTCTAGCTACCTCCACGAGGTAGGTGTAAGGTCTACGTATAGTCTACTCTCTCCAAACTCGAATTGTGGGATTTCACTGAAAGTTACTTTAGAAACAACCTCTCTACCTTCACGAGCTAGAGGTAAGATTTGCATACAATCTTACCTCTCCAGACCTCACTTGTGGGATTTCAATGAGAATGTTGTTGTAAAAGTTACTTACAATGTTTGGTTTATTAAACTTGCAGCCCAATTATGATGAGTGCTGGAGAATTAGAAAGTGGAAATGCAGGAGAGCCAGCTAAATTGATCAGGCAAAGGTACAGAGAGGCCGCGGAAATCATCAGGAAGGGAAACATGTGTTGCCTCTTCATCAACGATCTTGATGCAGGAGCCGGTAGAATGGGTGGAACTACACAATACACTGTCAACAACCAAATGGTGAATGCTACACTCATGAACATTGCTGATAACCCGACGAATGTCCAACTCCCCGGTATGTACAACAAGCAAGAGAATGCCAGGGTACCTATTATTGTCACTGGTAACGATTTCTCCACATTGTATGCACCTCTTATCCGTGATGGTCGTATGGAGAAATTCTACTGGGCACCAACTAGAGAAGACAGAATTGGTGTTTGCAAAGGTATTTTCAGGACTGACAGAGTTCCTGATGATGACATTGTCAAGATCGTCGATAGCTTCCCTGGACAATCTATTG</genome_strand>
        <mrna_strand>GTACCAATTGGACAACAAATTGGACGGTTTCTACATTGCTCCTGCTTTCATGGACAAACTTGTTGTTCACATCACCAAGAACTTCTTGACATTGCCCAACATCAAG.........................................................................................GTTCCACTCATCTTGGGTGTATGGGGAGGCAAAGGTCAAGGTAAATCATTCCAATGTGAGCTTGTCTTCAGAAAGATGGGAATCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCATTATGATGAGTGCCGGAGAATTGGAAAGTGGAAATGCAGGAGAGCCAGCTAAATTGATTAGGCAAAGGTACAGAGAGGCAGCTGAAATCATCAGGAAAGGAAACATGTGTTGTCTCTTCATCAACGATCTCGATGCAGGAGCTGGTAGAATGGGTGGAACTACCCAATACACCGTCAACAACCAGATGGTGAATGCCACCCTCATGAACATTGCTGACAACCCAACAAATGTCCAGCTCCCTGGTATGTACAACAAGCAAGAGAACGCCAGGGTACCCATTATTGTCACTGGTAACGACTTCTCCACATTGTATGCTCCTCTTATCCGTGATGGTCGTATGGAGAAGTTCTACTGGGCACCAACTAGGGAGGATAGAATTGGTGTTTGCAAGGGTATTTTCAGAACTGACAACGTNCCCTGAGAAGCTGTTGTAAAGATTGTCGATTCCTTCCCTGGACAATCTATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E410865" ref_strand="+" ref_description="SGN-E410865 [PPI-18-E18]">
      <seq>caggctcttaaaacgtaccaaatggacaacaaattggacggtttctacatcgccccttctttcatggacaaacttgttgttcacatcaccaagaacttcttgtcattgcccaacatcaaggttccactcatcttgggtgtatggggaggcaaaggtcaaggtaaatcattccaatgtgagcttgtcttcagaaagatgggaatcaaccccattatgatgagtgctggagaattggaaagtggaaatgcaggagagccagcaaaattgattaggcaaaggtacagagaggcagctgaaatcatcaggaaaggaaacatgtgttgtctcttcatcaacgatctcgatgcaggagctggtagaatgggtggaactacccaatacaccgtcaacaaccagatggtgaatgccaccctcatgaacattgctgacaacccaacaaatgtccagctccccggtatgtacaacaagcaagagaactgcagggtccccattattgtcactggtaacgacttctccacattgtatgctcctcttatccgtgatggtcgtatggagaagttctactgggcaccaactanggaagatagaattggtgtttgcaagggtattttcagaactgacaacgtgcctgaagaagctgttgtaaagattgtcgattccttccctggacatctatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="42464" stop="44379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42763" g_stop="42868" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="120" r_length="106" r_score="0.877"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42869" i_stop="42957" i_length="89">
            <donor d_prob="0.983" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42958" g_stop="43043" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="206" r_length="86" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43044" i_stop="43607" i_length="564">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43608" g_stop="44079" g_length="472"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="677" r_length="471" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E410865" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E410865" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42763" e_stop="42868"/>
          <exon e_start="42958" e_stop="43043"/>
          <exon e_start="43608" e_stop="44079"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATAACTTGGACAACAAGTTGGACGGATTCTACATCGCTCCTGCTTTCATGGACAAGCTTGTTGTTCACATCACCAAGAACTTCTTAACGTTGCCCAACATCAAGGTCTGTTAAAGAGATGTTTGTTAAAAAATTCTGGCTTAAGTAGTGTTTTGTGTAAAAGAAGATTTGAACTTTGTTTATGTTTCTTACAGGTTCCACTTATTTTGGGTGTTTGGGGAGGAAAAGGTCAAGGTAAATCATTCCAATGTGAGCTTGTCTTCAGAAAGATGGGAATCAAGTGAGTATTGCCTTAAATTACATACTATCTTTATTCGGATTTTTTTTTCCGAGGAAATGGACTACAGTTACTTCTAAAACAATCTCTCTACCTACATGAGATAGGGATAAGGTCTCTATATATACGGTTCACCCTCTCCAAACCTCACTTGTGGGATTTAATTTCACTAAGAATGTTGTTGCTGTATATAGACTAAAGTTACTTTTGAAAGAACCTATCTTACCTTCACGAGATAGGGGTAAAATCTGCATACAGTTTACCCTCTCTAGACCCCACTTGTAGGATTTCACTGAGAATGTTATTGTTGTAAGTGGATTAAAGTCTTCCGAATCATCCTTTCTAGCTACCTCCACGAGGTAGGTGTAAGGTCTACGTATAGTCTACTCTCTCCAAACTCGAATTGTGGGATTTCACTGAAAGTTACTTTAGAAACAACCTCTCTACCTTCACGAGCTAGAGGTAAGATTTGCATACAATCTTACCTCTCCAGACCTCACTTGTGGGATTTCAATGAGAATGTTGTTGTAAAAGTTACTTACAATGTTTGGTTTATTAAACTTGCAGCCCAATTATGATGAGTGCTGGAGAATTAGAAAGTGGAAATGCAGGAGAGCCAGCTAAATTGATCAGGCAAAGGTACAGAGAGGCCGCGGAAATCATCAGGAAGGGAAACATGTGTTGCCTCTTCATCAACGATCTTGATGCAGGAGCCGGTAGAATGGGTGGAACTACACAATACACTGTCAACAACCAAATGGTGAATGCTACACTCATGAACATTGCTGATAACCCGACGAATGTCCAACTCCCCGGTATGTACAACAAGCAAGAGAATGCCAGGGTACCTATTATTGTCACTGGTAACGATTTCTCCACATTGTATGCACCTCTTATCCGTGATGGTCGTATGGAGAAATTCTACTGGGCACCAACTAGAGAAGACAGAATTGGTGTTTGCAAAGGTATTTTCAGGACTGACAGAGTTCCTGATGATGACATTGTCAAGATCGTCGATAGCTTCCCTGGACAATCTATT</genome_strand>
        <mrna_strand>GTACCAAATGGACAACAAATTGGACGGTTTCTACATCGCCCCTTCTTTCATGGACAAACTTGTTGTTCACATCACCAAGAACTTCTTGTCATTGCCCAACATCAAG.........................................................................................GTTCCACTCATCTTGGGTGTATGGGGAGGCAAAGGTCAAGGTAAATCATTCCAATGTGAGCTTGTCTTCAGAAAGATGGGAATCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCATTATGATGAGTGCTGGAGAATTGGAAAGTGGAAATGCAGGAGAGCCAGCAAAATTGATTAGGCAAAGGTACAGAGAGGCAGCTGAAATCATCAGGAAAGGAAACATGTGTTGTCTCTTCATCAACGATCTCGATGCAGGAGCTGGTAGAATGGGTGGAACTACCCAATACACCGTCAACAACCAGATGGTGAATGCCACCCTCATGAACATTGCTGACAACCCAACAAATGTCCAGCTCCCCGGTATGTACAACAAGCAAGAGAACTGCAGGGTCCCCATTATTGTCACTGGTAACGACTTCTCCACATTGTATGCTCCTCTTATCCGTGATGGTCGTATGGAGAAGTTCTACTGGGCACCAACTANGGAAGATAGAATTGGTGTTTGCAAGGGTATTTTCAGAACTGACAACGTGCCTGAAGAAGCTGTTGTAAAGATTGTCGATTCCTTCCCTGGAC-ATCTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E469547" ref_strand="+" ref_description="SGN-E469547 [cSTB-12-O3]">
      <seq>ccaggctcttaaaacgtaccaaatggacaacaaattggacggtttctacatcgccccttctttcatggacaaacttgttgttcacatcaccaagaacttcttgtcattgcccaacatcaaggttccactcatcttgggtgtatggggaggcaaaggtcaaggtaaatcattccaatgtgagcttgtcttcagaaagatgggaatcaaccccattatgatgagtgctggagaattggaaagtggaaatgcaggagagccagcaaaattgattaggcaaaggtacagagaggcagctgaaatcatcaggaaaggaaacatgtgttgtctcttcatcaacgatctcgatgcangagctggtagaatgggtggaactacccaatacaccgtcaacaaccagatggtgaatgccaccctcatgaacattgctgacaacccaacaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="42464" stop="44143"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42763" g_stop="42868" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="121" r_length="106" r_score="0.877"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42869" i_stop="42957" i_length="89">
            <donor d_prob="0.983" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42958" g_stop="43043" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="207" r_length="86" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43044" i_stop="43607" i_length="564">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43608" g_stop="43843" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="443" r_length="236" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E469547" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E469547" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42763" e_stop="42868"/>
          <exon e_start="42958" e_stop="43043"/>
          <exon e_start="43608" e_stop="43843"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATAACTTGGACAACAAGTTGGACGGATTCTACATCGCTCCTGCTTTCATGGACAAGCTTGTTGTTCACATCACCAAGAACTTCTTAACGTTGCCCAACATCAAGGTCTGTTAAAGAGATGTTTGTTAAAAAATTCTGGCTTAAGTAGTGTTTTGTGTAAAAGAAGATTTGAACTTTGTTTATGTTTCTTACAGGTTCCACTTATTTTGGGTGTTTGGGGAGGAAAAGGTCAAGGTAAATCATTCCAATGTGAGCTTGTCTTCAGAAAGATGGGAATCAAGTGAGTATTGCCTTAAATTACATACTATCTTTATTCGGATTTTTTTTTCCGAGGAAATGGACTACAGTTACTTCTAAAACAATCTCTCTACCTACATGAGATAGGGATAAGGTCTCTATATATACGGTTCACCCTCTCCAAACCTCACTTGTGGGATTTAATTTCACTAAGAATGTTGTTGCTGTATATAGACTAAAGTTACTTTTGAAAGAACCTATCTTACCTTCACGAGATAGGGGTAAAATCTGCATACAGTTTACCCTCTCTAGACCCCACTTGTAGGATTTCACTGAGAATGTTATTGTTGTAAGTGGATTAAAGTCTTCCGAATCATCCTTTCTAGCTACCTCCACGAGGTAGGTGTAAGGTCTACGTATAGTCTACTCTCTCCAAACTCGAATTGTGGGATTTCACTGAAAGTTACTTTAGAAACAACCTCTCTACCTTCACGAGCTAGAGGTAAGATTTGCATACAATCTTACCTCTCCAGACCTCACTTGTGGGATTTCAATGAGAATGTTGTTGTAAAAGTTACTTACAATGTTTGGTTTATTAAACTTGCAGCCCAATTATGATGAGTGCTGGAGAATTAGAAAGTGGAAATGCAGGAGAGCCAGCTAAATTGATCAGGCAAAGGTACAGAGAGGCCGCGGAAATCATCAGGAAGGGAAACATGTGTTGCCTCTTCATCAACGATCTTGATGCAGGAGCCGGTAGAATGGGTGGAACTACACAATACACTGTCAACAACCAAATGGTGAATGCTACACTCATGAACATTGCTGATAACCCGACGAATG</genome_strand>
        <mrna_strand>GTACCAAATGGACAACAAATTGGACGGTTTCTACATCGCCCCTTCTTTCATGGACAAACTTGTTGTTCACATCACCAAGAACTTCTTGTCATTGCCCAACATCAAG.........................................................................................GTTCCACTCATCTTGGGTGTATGGGGAGGCAAAGGTCAAGGTAAATCATTCCAATGTGAGCTTGTCTTCAGAAAGATGGGAATCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCATTATGATGAGTGCTGGAGAATTGGAAAGTGGAAATGCAGGAGAGCCAGCAAAATTGATTAGGCAAAGGTACAGAGAGGCAGCTGAAATCATCAGGAAAGGAAACATGTGTTGTCTCTTCATCAACGATCTCGATGCANGAGCTGGTAGAATGGGTGGAACTACCCAATACACCGTCAACAACCAGATGGTGAATGCCACCCTCATGAACATTGCTGACAACCCAACAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E475161" ref_strand="+" ref_description="SGN-E475161 [cSTB-39-M16]">
      <seq>caggctctaaaaacgtaccaaatggacaacaaattggacggtttctacatcgcccctgctttcatggacaaacttgttgttcacatcaccaagaacttcttgtcattgcccaacatcaaggttccactcatcttgggtgtatggggaggcaaaggtcaaggtaaatcattccaatgtgagcttgtcttcagaaagatgggaatcaaccccattatgatgagtgctggagaattggaaagtggaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="42464" stop="43947"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42763" g_stop="42868" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="120" r_length="106" r_score="0.887"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42869" i_stop="42957" i_length="89">
            <donor d_prob="0.983" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42958" g_stop="43043" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="206" r_length="86" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43044" i_stop="43607" i_length="564">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43608" g_stop="43647" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="246" r_length="40" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E475161" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>232</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E475161" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42763" e_stop="42868"/>
          <exon e_start="42958" e_stop="43043"/>
          <exon e_start="43608" e_stop="43647"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATAACTTGGACAACAAGTTGGACGGATTCTACATCGCTCCTGCTTTCATGGACAAGCTTGTTGTTCACATCACCAAGAACTTCTTAACGTTGCCCAACATCAAGGTCTGTTAAAGAGATGTTTGTTAAAAAATTCTGGCTTAAGTAGTGTTTTGTGTAAAAGAAGATTTGAACTTTGTTTATGTTTCTTACAGGTTCCACTTATTTTGGGTGTTTGGGGAGGAAAAGGTCAAGGTAAATCATTCCAATGTGAGCTTGTCTTCAGAAAGATGGGAATCAAGTGAGTATTGCCTTAAATTACATACTATCTTTATTCGGATTTTTTTTTCCGAGGAAATGGACTACAGTTACTTCTAAAACAATCTCTCTACCTACATGAGATAGGGATAAGGTCTCTATATATACGGTTCACCCTCTCCAAACCTCACTTGTGGGATTTAATTTCACTAAGAATGTTGTTGCTGTATATAGACTAAAGTTACTTTTGAAAGAACCTATCTTACCTTCACGAGATAGGGGTAAAATCTGCATACAGTTTACCCTCTCTAGACCCCACTTGTAGGATTTCACTGAGAATGTTATTGTTGTAAGTGGATTAAAGTCTTCCGAATCATCCTTTCTAGCTACCTCCACGAGGTAGGTGTAAGGTCTACGTATAGTCTACTCTCTCCAAACTCGAATTGTGGGATTTCACTGAAAGTTACTTTAGAAACAACCTCTCTACCTTCACGAGCTAGAGGTAAGATTTGCATACAATCTTACCTCTCCAGACCTCACTTGTGGGATTTCAATGAGAATGTTGTTGTAAAAGTTACTTACAATGTTTGGTTTATTAAACTTGCAGCCCAATTATGATGAGTGCTGGAGAATTAGAAAGTGGAAAT</genome_strand>
        <mrna_strand>GTACCAAATGGACAACAAATTGGACGGTTTCTACATCGCCCCTGCTTTCATGGACAAACTTGTTGTTCACATCACCAAGAACTTCTTGTCATTGCCCAACATCAAG.........................................................................................GTTCCACTCATCTTGGGTGTATGGGGAGGCAAAGGTCAAGGTAAATCATTCCAATGTGAGCTTGTCTTCAGAAAGATGGGAATCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCATTATGATGAGTGCTGGAGAATTGGAAAGTGGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E294035" ref_strand="+" ref_description="SGN-E294035 [cLET-13-A21]">
      <seq>taccaattggacaacaaattggacgggttctacattgctcctgctttcatggacaaacttgttgttcacatcaccaagaacttcttgacattgcccaacatcaaggttccactcatcttgggtgtatggggaggcaaaggtcatggtaaatcattccaatgtgagctcgtcttcagaaagatgggaatcaaccccattatgatgagtgccggacaattggaaagtggaaatgcatgagagccacctaaattgattaggcaaaggtacagagaggcagctgaaatcatcaggaaaggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="42467" stop="44015"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42764" g_stop="42868" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="0.914"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42869" i_stop="42957" i_length="89">
            <donor d_prob="0.983" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42958" g_stop="43043" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="191" r_length="86" r_score="0.930"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43044" i_stop="43607" i_length="564">
            <donor d_prob="0.985" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43608" g_stop="43715" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="299" r_length="108" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E294035" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>299</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294035" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42764" e_stop="42868"/>
          <exon e_start="42958" e_stop="43043"/>
          <exon e_start="43608" e_stop="43715"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATAACTTGGACAACAAGTTGGACGGATTCTACATCGCTCCTGCTTTCATGGACAAGCTTGTTGTTCACATCACCAAGAACTTCTTAACGTTGCCCAACATCAAGGTCTGTTAAAGAGATGTTTGTTAAAAAATTCTGGCTTAAGTAGTGTTTTGTGTAAAAGAAGATTTGAACTTTGTTTATGTTTCTTACAGGTTCCACTTATTTTGGGTGTTTGGGGAGGAAAAGGTCAAGGTAAATCATTCCAATGTGAGCTTGTCTTCAGAAAGATGGGAATCAAGTGAGTATTGCCTTAAATTACATACTATCTTTATTCGGATTTTTTTTTCCGAGGAAATGGACTACAGTTACTTCTAAAACAATCTCTCTACCTACATGAGATAGGGATAAGGTCTCTATATATACGGTTCACCCTCTCCAAACCTCACTTGTGGGATTTAATTTCACTAAGAATGTTGTTGCTGTATATAGACTAAAGTTACTTTTGAAAGAACCTATCTTACCTTCACGAGATAGGGGTAAAATCTGCATACAGTTTACCCTCTCTAGACCCCACTTGTAGGATTTCACTGAGAATGTTATTGTTGTAAGTGGATTAAAGTCTTCCGAATCATCCTTTCTAGCTACCTCCACGAGGTAGGTGTAAGGTCTACGTATAGTCTACTCTCTCCAAACTCGAATTGTGGGATTTCACTGAAAGTTACTTTAGAAACAACCTCTCTACCTTCACGAGCTAGAGGTAAGATTTGCATACAATCTTACCTCTCCAGACCTCACTTGTGGGATTTCAATGAGAATGTTGTTGTAAAAGTTACTTACAATGTTTGGTTTATTAAACTTGCAGCCCAATTATGATGAGTGCTGGAGAATTAGAAAGTGGAAATGCAGGAGAGCCAGCTAAATTGATCAGGCAAAGGTACAGAGAGGCCGCGGAAATCATCAGGAAGGGAAA</genome_strand>
        <mrna_strand>TACCAATTGGACAACAAATTGGACGGGTTCTACATTGCTCCTGCTTTCATGGACAAACTTGTTGTTCACATCACCAAGAACTTCTTGACATTGCCCAACATCAAG.........................................................................................GTTCCACTCATCTTGGGTGTATGGGGAGGCAAAGGTCATGGTAAATCATTCCAATGTGAGCTCGTCTTCAGAAAGATGGGAATCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCATTATGATGAGTGCCGGACAATTGGAAAGTGGAAATGCATGAGAGCCACCTAAATTGATTAGGCAAAGGTACAGAGAGGCAGCTGAAATCATCAGGAAAGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E298306" ref_strand="+" ref_description="SGN-E298306 [cLET-41-I23]">
      <seq>gacaactaattggacggtttctacattgctcctgctttcatggacaaacttgttgttcacatcaccaagaacttcttgacattgcccaacatcaaggttccactcatcttgggtgtatggggaggcaaaggtcaaggcaaatcattccaatgtgagcttgtcttcagaaagatgggaatcaaccccattatgatgagtgccggagaattggaaagtggaaatgcaggagagccagctaaattgattaggcaaaggtacagagaggcagctgaaatcatcaggaaaggaaacatgtgttgtctcttcatcaacgatctcgatgcaggagctggtaaaatgggtggaactacccaatacaccgtccacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="42473" stop="44093"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42773" g_stop="42868" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42869" i_stop="42957" i_length="89">
            <donor d_prob="0.983" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42958" g_stop="43043" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="182" r_length="86" r_score="0.942"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43044" i_stop="43607" i_length="564">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43608" g_stop="43793" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="368" r_length="186" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E298306" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>368</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298306" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42773" e_stop="42868"/>
          <exon e_start="42958" e_stop="43043"/>
          <exon e_start="43608" e_stop="43793"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAACAAGTTGGACGGATTCTACATCGCTCCTGCTTTCATGGACAAGCTTGTTGTTCACATCACCAAGAACTTCTTAACGTTGCCCAACATCAAGGTCTGTTAAAGAGATGTTTGTTAAAAAATTCTGGCTTAAGTAGTGTTTTGTGTAAAAGAAGATTTGAACTTTGTTTATGTTTCTTACAGGTTCCACTTATTTTGGGTGTTTGGGGAGGAAAAGGTCAAGGTAAATCATTCCAATGTGAGCTTGTCTTCAGAAAGATGGGAATCAAGTGAGTATTGCCTTAAATTACATACTATCTTTATTCGGATTTTTTTTTCCGAGGAAATGGACTACAGTTACTTCTAAAACAATCTCTCTACCTACATGAGATAGGGATAAGGTCTCTATATATACGGTTCACCCTCTCCAAACCTCACTTGTGGGATTTAATTTCACTAAGAATGTTGTTGCTGTATATAGACTAAAGTTACTTTTGAAAGAACCTATCTTACCTTCACGAGATAGGGGTAAAATCTGCATACAGTTTACCCTCTCTAGACCCCACTTGTAGGATTTCACTGAGAATGTTATTGTTGTAAGTGGATTAAAGTCTTCCGAATCATCCTTTCTAGCTACCTCCACGAGGTAGGTGTAAGGTCTACGTATAGTCTACTCTCTCCAAACTCGAATTGTGGGATTTCACTGAAAGTTACTTTAGAAACAACCTCTCTACCTTCACGAGCTAGAGGTAAGATTTGCATACAATCTTACCTCTCCAGACCTCACTTGTGGGATTTCAATGAGAATGTTGTTGTAAAAGTTACTTACAATGTTTGGTTTATTAAACTTGCAGCCCAATTATGATGAGTGCTGGAGAATTAGAAAGTGGAAATGCAGGAGAGCCAGCTAAATTGATCAGGCAAAGGTACAGAGAGGCCGCGGAAATCATCAGGAAGGGAAACATGTGTTGCCTCTTCATCAACGATCTTGATGCAGGAGCCGGTAGAATGGGTGGAACTACACAATACACTGTCAACAA</genome_strand>
        <mrna_strand>GACAACTAATTGGACGGTTTCTACATTGCTCCTGCTTTCATGGACAAACTTGTTGTTCACATCACCAAGAACTTCTTGACATTGCCCAACATCAAG.........................................................................................GTTCCACTCATCTTGGGTGTATGGGGAGGCAAAGGTCAAGGCAAATCATTCCAATGTGAGCTTGTCTTCAGAAAGATGGGAATCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCATTATGATGAGTGCCGGAGAATTGGAAAGTGGAAATGCAGGAGAGCCAGCTAAATTGATTAGGCAAAGGTACAGAGAGGCAGCTGAAATCATCAGGAAAGGAAACATGTGTTGTCTCTTCATCAACGATCTCGATGCAGGAGCTGGTAAAATGGGTGGAACTACCCAATACACCGTCCACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E284016" ref_strand="-" ref_description="SGN-E284016 [cLER-13-C7]">
      <seq>cttgattaaagcagcatcaaggaacaaattggacggtttctacattgctcctgctttcatggacaaacttgttgttcacatcaccaagaacttcttgacattgcccaacatcaaggttccactcatcttgggtgtatggggaggcaaaggtcaaggtaaatcattccaatgtgagcttgtcttcagaaagatgggaatcaaccccattatgatgagtgccggagaattggaaagtggaaatgcaggagagccagctaaattgattaggcaaaggtacagagaggcagctgaaatcatcaggaaaggaaacatgtgttgtctcttcatcaacgatctcgatgcaggagctggtagaatgggtggaactacccaatacaccgtcaacaaccagatggtgaatgccaccctcatgaacattgctgacaacccaacaaatgtccagctccntggtatgtacaacaagcaagagaacgccaggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="42476" stop="44185"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42776" g_stop="42868" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="115" r_length="93" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42869" i_stop="42957" i_length="89">
            <donor d_prob="0.983" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42958" g_stop="43043" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="201" r_length="86" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43044" i_stop="43607" i_length="564">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43608" g_stop="43885" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="479" r_length="278" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E284016" ref_strand="-">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284016" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="42776" e_stop="42868"/>
          <exon e_start="42958" e_stop="43043"/>
          <exon e_start="43608" e_stop="43885"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAGTTGGACGGATTCTACATCGCTCCTGCTTTCATGGACAAGCTTGTTGTTCACATCACCAAGAACTTCTTAACGTTGCCCAACATCAAGGTCTGTTAAAGAGATGTTTGTTAAAAAATTCTGGCTTAAGTAGTGTTTTGTGTAAAAGAAGATTTGAACTTTGTTTATGTTTCTTACAGGTTCCACTTATTTTGGGTGTTTGGGGAGGAAAAGGTCAAGGTAAATCATTCCAATGTGAGCTTGTCTTCAGAAAGATGGGAATCAAGTGAGTATTGCCTTAAATTACATACTATCTTTATTCGGATTTTTTTTTCCGAGGAAATGGACTACAGTTACTTCTAAAACAATCTCTCTACCTACATGAGATAGGGATAAGGTCTCTATATATACGGTTCACCCTCTCCAAACCTCACTTGTGGGATTTAATTTCACTAAGAATGTTGTTGCTGTATATAGACTAAAGTTACTTTTGAAAGAACCTATCTTACCTTCACGAGATAGGGGTAAAATCTGCATACAGTTTACCCTCTCTAGACCCCACTTGTAGGATTTCACTGAGAATGTTATTGTTGTAAGTGGATTAAAGTCTTCCGAATCATCCTTTCTAGCTACCTCCACGAGGTAGGTGTAAGGTCTACGTATAGTCTACTCTCTCCAAACTCGAATTGTGGGATTTCACTGAAAGTTACTTTAGAAACAACCTCTCTACCTTCACGAGCTAGAGGTAAGATTTGCATACAATCTTACCTCTCCAGACCTCACTTGTGGGATTTCAATGAGAATGTTGTTGTAAAAGTTACTTACAATGTTTGGTTTATTAAACTTGCAGCCCAATTATGATGAGTGCTGGAGAATTAGAAAGTGGAAATGCAGGAGAGCCAGCTAAATTGATCAGGCAAAGGTACAGAGAGGCCGCGGAAATCATCAGGAAGGGAAACATGTGTTGCCTCTTCATCAACGATCTTGATGCAGGAGCCGGTAGAATGGGTGGAACTACACAATACACTGTCAACAACCAAATGGTGAATGCTACACTCATGAACATTGCTGATAACCCGACGAATGTCCAACTCCCCGGTATGTACAACAAGCAAGAGAATGCCAGGG</genome_strand>
        <mrna_strand>AACAAATTGGACGGTTTCTACATTGCTCCTGCTTTCATGGACAAACTTGTTGTTCACATCACCAAGAACTTCTTGACATTGCCCAACATCAAG.........................................................................................GTTCCACTCATCTTGGGTGTATGGGGAGGCAAAGGTCAAGGTAAATCATTCCAATGTGAGCTTGTCTTCAGAAAGATGGGAATCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCATTATGATGAGTGCCGGAGAATTGGAAAGTGGAAATGCAGGAGAGCCAGCTAAATTGATTAGGCAAAGGTACAGAGAGGCAGCTGAAATCATCAGGAAAGGAAACATGTGTTGTCTCTTCATCAACGATCTCGATGCAGGAGCTGGTAGAATGGGTGGAACTACCCAATACACCGTCAACAACCAGATGGTGAATGCCACCCTCATGAACATTGCTGACAACCCAACAAATGTCCAGCTCCNTGGTATGTACAACAAGCAAGAGAACGCCAGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E297862" ref_strand="+" ref_description="SGN-E297862 [cLET-38-N2]">
      <seq>aaattggacggtttctacattgctcctgctttcatggacaaacttgttgttcacatcaccaagaacttcttgacattgcccaacatcaaggttccactcatcttgggtgtatggggaggcaaaggtcaaggtaaatcattccaatgtgagcttgtcttcagaaagatgggaatcaaccccattatgatgagtgccggagaattggaaagtggaaatgcaggagagccagctaaattgattaggcaaaggtacagagaggcagctgaaatcatcaggaaaggaaacatgtgttgtctcttcatcaacgatctcgatgcaggagctggtagaatgggtggaactacccaatacaccgtcaacaaccagatggtgaatgccaccctcatgaacattgctgacaacccaacaaatgtccagctccctggtatgtacaacaagcaagagaacgccagggtacccattattgtcactggtaacgacttctccacattgtatgctcctcttatccgtgatggtcgtatggagaagttctactggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="42479" stop="44269"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42779" g_stop="42868" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42869" i_stop="42957" i_length="89">
            <donor d_prob="0.983" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42958" g_stop="43043" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="176" r_length="86" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43044" i_stop="43607" i_length="564">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43608" g_stop="43969" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="538" r_length="362" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E297862" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297862" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42779" e_stop="42868"/>
          <exon e_start="42958" e_stop="43043"/>
          <exon e_start="43608" e_stop="43969"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTGGACGGATTCTACATCGCTCCTGCTTTCATGGACAAGCTTGTTGTTCACATCACCAAGAACTTCTTAACGTTGCCCAACATCAAGGTCTGTTAAAGAGATGTTTGTTAAAAAATTCTGGCTTAAGTAGTGTTTTGTGTAAAAGAAGATTTGAACTTTGTTTATGTTTCTTACAGGTTCCACTTATTTTGGGTGTTTGGGGAGGAAAAGGTCAAGGTAAATCATTCCAATGTGAGCTTGTCTTCAGAAAGATGGGAATCAAGTGAGTATTGCCTTAAATTACATACTATCTTTATTCGGATTTTTTTTTCCGAGGAAATGGACTACAGTTACTTCTAAAACAATCTCTCTACCTACATGAGATAGGGATAAGGTCTCTATATATACGGTTCACCCTCTCCAAACCTCACTTGTGGGATTTAATTTCACTAAGAATGTTGTTGCTGTATATAGACTAAAGTTACTTTTGAAAGAACCTATCTTACCTTCACGAGATAGGGGTAAAATCTGCATACAGTTTACCCTCTCTAGACCCCACTTGTAGGATTTCACTGAGAATGTTATTGTTGTAAGTGGATTAAAGTCTTCCGAATCATCCTTTCTAGCTACCTCCACGAGGTAGGTGTAAGGTCTACGTATAGTCTACTCTCTCCAAACTCGAATTGTGGGATTTCACTGAAAGTTACTTTAGAAACAACCTCTCTACCTTCACGAGCTAGAGGTAAGATTTGCATACAATCTTACCTCTCCAGACCTCACTTGTGGGATTTCAATGAGAATGTTGTTGTAAAAGTTACTTACAATGTTTGGTTTATTAAACTTGCAGCCCAATTATGATGAGTGCTGGAGAATTAGAAAGTGGAAATGCAGGAGAGCCAGCTAAATTGATCAGGCAAAGGTACAGAGAGGCCGCGGAAATCATCAGGAAGGGAAACATGTGTTGCCTCTTCATCAACGATCTTGATGCAGGAGCCGGTAGAATGGGTGGAACTACACAATACACTGTCAACAACCAAATGGTGAATGCTACACTCATGAACATTGCTGATAACCCGACGAATGTCCAACTCCCCGGTATGTACAACAAGCAAGAGAATGCCAGGGTACCTATTATTGTCACTGGTAACGATTTCTCCACATTGTATGCACCTCTTATCCGTGATGGTCGTATGGAGAAATTCTACTGGG</genome_strand>
        <mrna_strand>AAATTGGACGGTTTCTACATTGCTCCTGCTTTCATGGACAAACTTGTTGTTCACATCACCAAGAACTTCTTGACATTGCCCAACATCAAG.........................................................................................GTTCCACTCATCTTGGGTGTATGGGGAGGCAAAGGTCAAGGTAAATCATTCCAATGTGAGCTTGTCTTCAGAAAGATGGGAATCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCATTATGATGAGTGCCGGAGAATTGGAAAGTGGAAATGCAGGAGAGCCAGCTAAATTGATTAGGCAAAGGTACAGAGAGGCAGCTGAAATCATCAGGAAAGGAAACATGTGTTGTCTCTTCATCAACGATCTCGATGCAGGAGCTGGTAGAATGGGTGGAACTACCCAATACACCGTCAACAACCAGATGGTGAATGCCACCCTCATGAACATTGCTGACAACCCAACAAATGTCCAGCTCCCTGGTATGTACAACAAGCAAGAGAACGCCAGGGTACCCATTATTGTCACTGGTAACGACTTCTCCACATTGTATGCTCCTCTTATCCGTGATGGTCGTATGGAGAAGTTCTACTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E469113" ref_strand="+" ref_description="SGN-E469113 [cSTB-10-B17]">
      <seq>attggacggtttctacatcgcccctgctttcatggacaaacttgttgttcacatcaccaagaacttcttgtcattgcccaacatcaaggttccactcatcttgggtgtatggggaggcaaaggtcaaggtaaatcattccaatgtgagcttgtcttcagaaagatgggaatcaaccccattatgatgagtgctggagaattggaaagtggaaatgcaggagagccagcaaaattgattaggcaaaggtacagagaggcagctgaaatcatcaggaaaggaaacatgtgttgtctcttcatcaacgatctcgatgcangagcgggtagaatgggtggaactacccaatacaccgtcaacaaccagatggtgaatgccaccctcatgaacattgctgacaacccaacaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="42482" stop="44143"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42781" g_stop="42868" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="0.920"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42869" i_stop="42957" i_length="89">
            <donor d_prob="0.983" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42958" g_stop="43043" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="174" r_length="86" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43044" i_stop="43607" i_length="564">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43608" g_stop="43843" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="410" r_length="236" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E469113" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>410</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E469113" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42781" e_stop="42868"/>
          <exon e_start="42958" e_stop="43043"/>
          <exon e_start="43608" e_stop="43843"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGGACGGATTCTACATCGCTCCTGCTTTCATGGACAAGCTTGTTGTTCACATCACCAAGAACTTCTTAACGTTGCCCAACATCAAGGTCTGTTAAAGAGATGTTTGTTAAAAAATTCTGGCTTAAGTAGTGTTTTGTGTAAAAGAAGATTTGAACTTTGTTTATGTTTCTTACAGGTTCCACTTATTTTGGGTGTTTGGGGAGGAAAAGGTCAAGGTAAATCATTCCAATGTGAGCTTGTCTTCAGAAAGATGGGAATCAAGTGAGTATTGCCTTAAATTACATACTATCTTTATTCGGATTTTTTTTTCCGAGGAAATGGACTACAGTTACTTCTAAAACAATCTCTCTACCTACATGAGATAGGGATAAGGTCTCTATATATACGGTTCACCCTCTCCAAACCTCACTTGTGGGATTTAATTTCACTAAGAATGTTGTTGCTGTATATAGACTAAAGTTACTTTTGAAAGAACCTATCTTACCTTCACGAGATAGGGGTAAAATCTGCATACAGTTTACCCTCTCTAGACCCCACTTGTAGGATTTCACTGAGAATGTTATTGTTGTAAGTGGATTAAAGTCTTCCGAATCATCCTTTCTAGCTACCTCCACGAGGTAGGTGTAAGGTCTACGTATAGTCTACTCTCTCCAAACTCGAATTGTGGGATTTCACTGAAAGTTACTTTAGAAACAACCTCTCTACCTTCACGAGCTAGAGGTAAGATTTGCATACAATCTTACCTCTCCAGACCTCACTTGTGGGATTTCAATGAGAATGTTGTTGTAAAAGTTACTTACAATGTTTGGTTTATTAAACTTGCAGCCCAATTATGATGAGTGCTGGAGAATTAGAAAGTGGAAATGCAGGAGAGCCAGCTAAATTGATCAGGCAAAGGTACAGAGAGGCCGCGGAAATCATCAGGAAGGGAAACATGTGTTGCCTCTTCATCAACGATCTTGATGCAGGAGCCGGTAGAATGGGTGGAACTACACAATACACTGTCAACAACCAAATGGTGAATGCTACACTCATGAACATTGCTGATAACCCGACGAATG</genome_strand>
        <mrna_strand>ATTGGACGGTTTCTACATCGCCCCTGCTTTCATGGACAAACTTGTTGTTCACATCACCAAGAACTTCTTGTCATTGCCCAACATCAAG.........................................................................................GTTCCACTCATCTTGGGTGTATGGGGAGGCAAAGGTCAAGGTAAATCATTCCAATGTGAGCTTGTCTTCAGAAAGATGGGAATCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCATTATGATGAGTGCTGGAGAATTGGAAAGTGGAAATGCAGGAGAGCCAGCAAAATTGATTAGGCAAAGGTACAGAGAGGCAGCTGAAATCATCAGGAAAGGAAACATGTGTTGTCTCTTCATCAACGATCTCGATGCANGAGCGGGTAGAATGGGTGGAACTACCCAATACACCGTCAACAACCAGATGGTGAATGCCACCCTCATGAACATTGCTGACAACCCAACAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E406216" ref_strand="+" ref_description="SGN-E406216 [PPI-3-I3]">
      <seq>gacggtttctacatcgccccttctttcatggacaaacttgttgttcacatcaccaagaacttcttgtcattgcccaacatcaaggttccactcatcttgggtgtatggggaggcaaaggtcaaggtaaatcattccaatgtgagcttgtcttcagaaagatgggaatcaaccccattatgatgagtgctggagaattggaaagtggaaatgcaggagagccagcaaaattgattaggcaaaggtacagagaggcagctgaaatcatcaggaaaggaaacatgtgttgtctcttcatcaacgatctcgatgcaggagctggtagaatgggtggaactacccaatacaccgtcaacaaccagatggtgaatgccaccctcatgaacattgctgacaacccaacaaatgtccagctccccggtatgtacaacaagcaagagaactgcagggtccccattattgtcactggtaacgacttctccacattgtatgctcctcttatccgtgatggtcgtatggagaagttctactgggcaccaactagggaggatagaattggtgtttgcaagggtattttcagaactgacaacgtgcctgaggaagctgttgtaaagattgtcgattccttccctggacaatctattgatttcttcggtgctttgagggcacgagtatatgacgatgaagtgaggaaatgggtttcaagaactggaattgaacaaattgggtgacaacttttgaactctagagatggaccccccacttttgagcaccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="42485" stop="44592"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42785" g_stop="42868" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="0.917"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42869" i_stop="42957" i_length="89">
            <donor d_prob="0.983" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42958" g_stop="43043" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="170" r_length="86" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43044" i_stop="43607" i_length="564">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43608" g_stop="44080" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="643" r_length="473" r_score="0.907"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44081" i_stop="44160" i_length="80">
            <donor d_prob="0.980" d_score="0.82"/>
            <acceptor a_prob="0.973" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44161" g_stop="44292" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="644" r_stop="774" r_length="131" r_score="0.848"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E406216" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>775</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E406216" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42785" e_stop="42868"/>
          <exon e_start="42958" e_stop="43043"/>
          <exon e_start="43608" e_stop="44080"/>
          <exon e_start="44161" e_stop="44292"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACGGATTCTACATCGCTCCTGCTTTCATGGACAAGCTTGTTGTTCACATCACCAAGAACTTCTTAACGTTGCCCAACATCAAGGTCTGTTAAAGAGATGTTTGTTAAAAAATTCTGGCTTAAGTAGTGTTTTGTGTAAAAGAAGATTTGAACTTTGTTTATGTTTCTTACAGGTTCCACTTATTTTGGGTGTTTGGGGAGGAAAAGGTCAAGGTAAATCATTCCAATGTGAGCTTGTCTTCAGAAAGATGGGAATCAAGTGAGTATTGCCTTAAATTACATACTATCTTTATTCGGATTTTTTTTTCCGAGGAAATGGACTACAGTTACTTCTAAAACAATCTCTCTACCTACATGAGATAGGGATAAGGTCTCTATATATACGGTTCACCCTCTCCAAACCTCACTTGTGGGATTTAATTTCACTAAGAATGTTGTTGCTGTATATAGACTAAAGTTACTTTTGAAAGAACCTATCTTACCTTCACGAGATAGGGGTAAAATCTGCATACAGTTTACCCTCTCTAGACCCCACTTGTAGGATTTCACTGAGAATGTTATTGTTGTAAGTGGATTAAAGTCTTCCGAATCATCCTTTCTAGCTACCTCCACGAGGTAGGTGTAAGGTCTACGTATAGTCTACTCTCTCCAAACTCGAATTGTGGGATTTCACTGAAAGTTACTTTAGAAACAACCTCTCTACCTTCACGAGCTAGAGGTAAGATTTGCATACAATCTTACCTCTCCAGACCTCACTTGTGGGATTTCAATGAGAATGTTGTTGTAAAAGTTACTTACAATGTTTGGTTTATTAAACTTGCAGCCCAATTATGATGAGTGCTGGAGAATTAGAAAGTGGAAATGCAGGAGAGCCAGCTAAATTGATCAGGCAAAGGTACAGAGAGGCCGCGGAAATCATCAGGAAGGGAAACATGTGTTGCCTCTTCATCAACGATCTTGATGCAGGAGCCGGTAGAATGGGTGGAACTACACAATACACTGTCAACAACCAAATGGTGAATGCTACACTCATGAACATTGCTGATAACCCGACGAATGTCCAACTCCCCGGTATGTACAACAAGCAAGAGAATGCCAGGGTACCTATTATTGTCACTGGTAACGATTTCTCCACATTGTATGCACCTCTTATCCGTGATGGTCGTATGGAGAAATTCTACTGGGCACCAACTAGAGAAGACAGAATTGGTGTTTGCAAAGGTATTTTCAGGACTGACAGAGTTCCTGATGATGACATTGTCAAGATCGTCGATAGCTTCCCTGGACAATCTATTGGTAAGGAGACTAATAATATTTAACTTGTGTTAAAGATGAATAATAATATCAATGATCATATCTGAGTGGATCTTAAACAGATTTCTTCGGTGCTCTGAGGGCGAGAGTATACGATGATGAAGTGAGGAAATGGATTGGAAGTACTGGAATTGAACAAATTGGAGAGAAACTTTTGAACTCAAGGGATGGACCACCAACATTTGAGCAACCAA</genome_strand>
        <mrna_strand>GACGGTTTCTACATCGCCCCTTCTTTCATGGACAAACTTGTTGTTCACATCACCAAGAACTTCTTGTCATTGCCCAACATCAAG.........................................................................................GTTCCACTCATCTTGGGTGTATGGGGAGGCAAAGGTCAAGGTAAATCATTCCAATGTGAGCTTGTCTTCAGAAAGATGGGAATCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCATTATGATGAGTGCTGGAGAATTGGAAAGTGGAAATGCAGGAGAGCCAGCAAAATTGATTAGGCAAAGGTACAGAGAGGCAGCTGAAATCATCAGGAAAGGAAACATGTGTTGTCTCTTCATCAACGATCTCGATGCAGGAGCTGGTAGAATGGGTGGAACTACCCAATACACCGTCAACAACCAGATGGTGAATGCCACCCTCATGAACATTGCTGACAACCCAACAAATGTCCAGCTCCCCGGTATGTACAACAAGCAAGAGAACTGCAGGGTCCCCATTATTGTCACTGGTAACGACTTCTCCACATTGTATGCTCCTCTTATCCGTGATGGTCGTATGGAGAAGTTCTACTGGGCACCAACTAGGGAGGATAGAATTGGTGTTTGCAAGGGTATTTTCAGAACTGACAACGTGCCTGAGGAAGCTGTTGTAAAGATTGTCGATTCCTTCCCTGGACAATCTATTG................................................................................ATTTCTTCGGTGCTTTGAGGGCACGAGTATATGACGATGAAGTGAGGAAATGGGTTTCAAGAACTGGAATTGAACAAATTGGGTGACAACTTTTGAACTCTAGAGATGGACCCCCCACTTTTGAGC-ACCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E476753" ref_strand="+" ref_description="SGN-E476753 [cSTB-45-J10]">
      <seq>tttctacatcgcccctgctttcatggacaaacttgttgttcacatcaccaagaacttcttgtcattgcccaacatcaaggttccactcatcttgggtgtatggggaggcaaaggtcaaggtaaatcattccaatgtgagcttgtcttcagaaagatgggaatcaaccccattatgatgagtgctggagaattggaaagtggaaatgcaggagagccagcaaaattgattaggcaaaggtacagagaggcagctgaaatcatcaggaaaggaaacatgtgttgtctcttcatcaacgatctcgatgcangagcgggtagaatgggtggaactacccaatacaccgtcaacaaccagatggtgaatgccaccctcatgaacattgctgacaacccaacaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="42491" stop="44143"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42790" g_stop="42868" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="0.924"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42869" i_stop="42957" i_length="89">
            <donor d_prob="0.983" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42958" g_stop="43043" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="165" r_length="86" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43044" i_stop="43607" i_length="564">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43608" g_stop="43843" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="401" r_length="236" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E476753" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E476753" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42790" e_stop="42868"/>
          <exon e_start="42958" e_stop="43043"/>
          <exon e_start="43608" e_stop="43843"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTACATCGCTCCTGCTTTCATGGACAAGCTTGTTGTTCACATCACCAAGAACTTCTTAACGTTGCCCAACATCAAGGTCTGTTAAAGAGATGTTTGTTAAAAAATTCTGGCTTAAGTAGTGTTTTGTGTAAAAGAAGATTTGAACTTTGTTTATGTTTCTTACAGGTTCCACTTATTTTGGGTGTTTGGGGAGGAAAAGGTCAAGGTAAATCATTCCAATGTGAGCTTGTCTTCAGAAAGATGGGAATCAAGTGAGTATTGCCTTAAATTACATACTATCTTTATTCGGATTTTTTTTTCCGAGGAAATGGACTACAGTTACTTCTAAAACAATCTCTCTACCTACATGAGATAGGGATAAGGTCTCTATATATACGGTTCACCCTCTCCAAACCTCACTTGTGGGATTTAATTTCACTAAGAATGTTGTTGCTGTATATAGACTAAAGTTACTTTTGAAAGAACCTATCTTACCTTCACGAGATAGGGGTAAAATCTGCATACAGTTTACCCTCTCTAGACCCCACTTGTAGGATTTCACTGAGAATGTTATTGTTGTAAGTGGATTAAAGTCTTCCGAATCATCCTTTCTAGCTACCTCCACGAGGTAGGTGTAAGGTCTACGTATAGTCTACTCTCTCCAAACTCGAATTGTGGGATTTCACTGAAAGTTACTTTAGAAACAACCTCTCTACCTTCACGAGCTAGAGGTAAGATTTGCATACAATCTTACCTCTCCAGACCTCACTTGTGGGATTTCAATGAGAATGTTGTTGTAAAAGTTACTTACAATGTTTGGTTTATTAAACTTGCAGCCCAATTATGATGAGTGCTGGAGAATTAGAAAGTGGAAATGCAGGAGAGCCAGCTAAATTGATCAGGCAAAGGTACAGAGAGGCCGCGGAAATCATCAGGAAGGGAAACATGTGTTGCCTCTTCATCAACGATCTTGATGCAGGAGCCGGTAGAATGGGTGGAACTACACAATACACTGTCAACAACCAAATGGTGAATGCTACACTCATGAACATTGCTGATAACCCGACGAATG</genome_strand>
        <mrna_strand>TTTCTACATCGCCCCTGCTTTCATGGACAAACTTGTTGTTCACATCACCAAGAACTTCTTGTCATTGCCCAACATCAAG.........................................................................................GTTCCACTCATCTTGGGTGTATGGGGAGGCAAAGGTCAAGGTAAATCATTCCAATGTGAGCTTGTCTTCAGAAAGATGGGAATCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCATTATGATGAGTGCTGGAGAATTGGAAAGTGGAAATGCAGGAGAGCCAGCAAAATTGATTAGGCAAAGGTACAGAGAGGCAGCTGAAATCATCAGGAAAGGAAACATGTGTTGTCTCTTCATCAACGATCTCGATGCANGAGCGGGTAGAATGGGTGGAACTACCCAATACACCGTCAACAACCAGATGGTGAATGCCACCCTCATGAACATTGCTGACAACCCAACAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E298462" ref_strand="+" ref_description="SGN-E298462 [cLET-41-I19]">
      <seq>tttctacattgctcctgctttcatgggcaaacttgttgttcacatcaccaataactttttgacattgcccaacatcaatgttccactcatcttgggtgtatggggaggcaaaggtcaaggtaaatcattccaatgtgagcttgtcttcataaagatgggaatcaaccccattatgatgagtgccgtacaattggaaagtggaaatgcaggagagccagctaaattgattaggcaaaggtacagagaagcagctgaaatcatcaggaaaggaaacatgtgttgtctcttcatcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="42491" stop="44037"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42790" g_stop="42868" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="0.886"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42869" i_stop="42957" i_length="89">
            <donor d_prob="0.983" d_score="0.88"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42958" g_stop="43043" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="165" r_length="86" r_score="0.942"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43044" i_stop="43607" i_length="564">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43608" g_stop="43737" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="295" r_length="130" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E298462" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>295</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298462" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42790" e_stop="42868"/>
          <exon e_start="42958" e_stop="43043"/>
          <exon e_start="43608" e_stop="43737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTACATCGCTCCTGCTTTCATGGACAAGCTTGTTGTTCACATCACCAAGAACTTCTTAACGTTGCCCAACATCAAGGTCTGTTAAAGAGATGTTTGTTAAAAAATTCTGGCTTAAGTAGTGTTTTGTGTAAAAGAAGATTTGAACTTTGTTTATGTTTCTTACAGGTTCCACTTATTTTGGGTGTTTGGGGAGGAAAAGGTCAAGGTAAATCATTCCAATGTGAGCTTGTCTTCAGAAAGATGGGAATCAAGTGAGTATTGCCTTAAATTACATACTATCTTTATTCGGATTTTTTTTTCCGAGGAAATGGACTACAGTTACTTCTAAAACAATCTCTCTACCTACATGAGATAGGGATAAGGTCTCTATATATACGGTTCACCCTCTCCAAACCTCACTTGTGGGATTTAATTTCACTAAGAATGTTGTTGCTGTATATAGACTAAAGTTACTTTTGAAAGAACCTATCTTACCTTCACGAGATAGGGGTAAAATCTGCATACAGTTTACCCTCTCTAGACCCCACTTGTAGGATTTCACTGAGAATGTTATTGTTGTAAGTGGATTAAAGTCTTCCGAATCATCCTTTCTAGCTACCTCCACGAGGTAGGTGTAAGGTCTACGTATAGTCTACTCTCTCCAAACTCGAATTGTGGGATTTCACTGAAAGTTACTTTAGAAACAACCTCTCTACCTTCACGAGCTAGAGGTAAGATTTGCATACAATCTTACCTCTCCAGACCTCACTTGTGGGATTTCAATGAGAATGTTGTTGTAAAAGTTACTTACAATGTTTGGTTTATTAAACTTGCAGCCCAATTATGATGAGTGCTGGAGAATTAGAAAGTGGAAATGCAGGAGAGCCAGCTAAATTGATCAGGCAAAGGTACAGAGAGGCCGCGGAAATCATCAGGAAGGGAAACATGTGTTGCCTCTTCATCAAC</genome_strand>
        <mrna_strand>TTTCTACATTGCTCCTGCTTTCATGGGCAAACTTGTTGTTCACATCACCAATAACTTTTTGACATTGCCCAACATCAAT.........................................................................................GTTCCACTCATCTTGGGTGTATGGGGAGGCAAAGGTCAAGGTAAATCATTCCAATGTGAGCTTGTCTTCATAAAGATGGGAATCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCATTATGATGAGTGCCGTACAATTGGAAAGTGGAAATGCAGGAGAGCCAGCTAAATTGATTAGGCAAAGGTACAGAGAAGCAGCTGAAATCATCAGGAAAGGAAACATGTGTTGTCTCTTCATCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E710271" ref_strand="+" ref_description="SGN-E710271 [FA54DF12]">
      <seq>cacgtttttcatggacaaacttgttgttcacatcaccaagaacttcttgacattgcccaacatcaaggttccactcatcttgggtgtatggggaggcaaaggtcaaggtaaatcattccaatgtgagcttgtcttcagaaagatgggaatcaaccccattatgatgagtgccggacaattggaaagtggaaatgcaggagagccagctaaattgattacgcaaaggtacagagaggcagctgaaatcatcaggaaaggaaacatgtgttgtctcttcatcaacgatctcgatgcaggagctggtacaatgggtggaactacccaatacaccgtcaacaaccagatggtgaatgccaccctcatgaacattgctgacaacccaacaaatgtccagctccctggtatgtacaacaagcaacagaacgccagggtacccattattgccactggtaacgacttctccacattgtatgctcctcttatccgcgatggtcgtatggagaagttctactgggccaccaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="42508" stop="44277"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42801" g_stop="42868" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="0.897"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42869" i_stop="42957" i_length="89">
            <donor d_prob="0.983" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42958" g_stop="43043" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="153" r_length="86" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43044" i_stop="43607" i_length="564">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43608" g_stop="43977" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="524" r_length="371" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E710271" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710271" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42801" e_stop="42868"/>
          <exon e_start="42958" e_stop="43043"/>
          <exon e_start="43608" e_stop="43977"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTGCTTTCATGGACAAGCTTGTTGTTCACATCACCAAGAACTTCTTAACGTTGCCCAACATCAAGGTCTGTTAAAGAGATGTTTGTTAAAAAATTCTGGCTTAAGTAGTGTTTTGTGTAAAAGAAGATTTGAACTTTGTTTATGTTTCTTACAGGTTCCACTTATTTTGGGTGTTTGGGGAGGAAAAGGTCAAGGTAAATCATTCCAATGTGAGCTTGTCTTCAGAAAGATGGGAATCAAGTGAGTATTGCCTTAAATTACATACTATCTTTATTCGGATTTTTTTTTCCGAGGAAATGGACTACAGTTACTTCTAAAACAATCTCTCTACCTACATGAGATAGGGATAAGGTCTCTATATATACGGTTCACCCTCTCCAAACCTCACTTGTGGGATTTAATTTCACTAAGAATGTTGTTGCTGTATATAGACTAAAGTTACTTTTGAAAGAACCTATCTTACCTTCACGAGATAGGGGTAAAATCTGCATACAGTTTACCCTCTCTAGACCCCACTTGTAGGATTTCACTGAGAATGTTATTGTTGTAAGTGGATTAAAGTCTTCCGAATCATCCTTTCTAGCTACCTCCACGAGGTAGGTGTAAGGTCTACGTATAGTCTACTCTCTCCAAACTCGAATTGTGGGATTTCACTGAAAGTTACTTTAGAAACAACCTCTCTACCTTCACGAGCTAGAGGTAAGATTTGCATACAATCTTACCTCTCCAGACCTCACTTGTGGGATTTCAATGAGAATGTTGTTGTAAAAGTTACTTACAATGTTTGGTTTATTAAACTTGCAGCCCAATTATGATGAGTGCTGGAGAATTAGAAAGTGGAAATGCAGGAGAGCCAGCTAAATTGATCAGGCAAAGGTACAGAGAGGCCGCGGAAATCATCAGGAAGGGAAACATGTGTTGCCTCTTCATCAACGATCTTGATGCAGGAGCCGGTAGAATGGGTGGAACTACACAATACACTGTCAACAACCAAATGGTGAATGCTACACTCATGAACATTGCTGATAACCCGACGAATGTCCAACTCCCCGGTATGTACAACAAGCAAGAGAATGCCAGGGTACCTATTATTGTCACTGGTAACGATTTCTCCACATTGTATGCACCTCTTATCCGTGATGGTCGTATGGAGAAATTCTACTGGG-CACCAACT</genome_strand>
        <mrna_strand>CACGT-TTTTCATGGACAAACTTGTTGTTCACATCACCAAGAACTTCTTGACATTGCCCAACATCAAG.........................................................................................GTTCCACTCATCTTGGGTGTATGGGGAGGCAAAGGTCAAGGTAAATCATTCCAATGTGAGCTTGTCTTCAGAAAGATGGGAATCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCATTATGATGAGTGCCGGACAATTGGAAAGTGGAAATGCAGGAGAGCCAGCTAAATTGATTACGCAAAGGTACAGAGAGGCAGCTGAAATCATCAGGAAAGGAAACATGTGTTGTCTCTTCATCAACGATCTCGATGCAGGAGCTGGTACAATGGGTGGAACTACCCAATACACCGTCAACAACCAGATGGTGAATGCCACCCTCATGAACATTGCTGACAACCCAACAAATGTCCAGCTCCCTGGTATGTACAACAAGCAACAGAACGCCAGGGTACCCATTATTGCCACTGGTAACGACTTCTCCACATTGTATGCTCCTCTTATCCGCGATGGTCGTATGGAGAAGTTCTACTGGGCCACCAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E318461" ref_strand="+" ref_description="SGN-E318461 [cTOB-10-H4]">
      <seq>ctgctttcatggacaaacttgttgttcacatcaccaagaacttcttgacattgcccaacatcaaggttccactcatcttgggtgtatggggaggcaaaggtcaaggtaaatcattccaatgtgagcttgtcttcagaaagatgggaatcaaccccattatgatgagtgccagagaattggaaagtggaaatgcacgagagccacctaaattgattacgcaaaggtacagagaggcagctgaaatcatgaggaaaggaaacatgtgttgtctcttcatcaacgatctccatgcatgaactggtagaatgggtggaactacccaatacaccgtcaacaaccagatggtgaatgccaccctcatgaacattgctgacaacccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="42504" stop="44137"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42804" g_stop="42868" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42869" i_stop="42957" i_length="89">
            <donor d_prob="0.983" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42958" g_stop="43043" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="151" r_length="86" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43044" i_stop="43607" i_length="564">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43608" g_stop="43837" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="381" r_length="230" r_score="0.891"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E318461" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>381</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318461" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42804" e_stop="42868"/>
          <exon e_start="42958" e_stop="43043"/>
          <exon e_start="43608" e_stop="43837"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCTTTCATGGACAAGCTTGTTGTTCACATCACCAAGAACTTCTTAACGTTGCCCAACATCAAGGTCTGTTAAAGAGATGTTTGTTAAAAAATTCTGGCTTAAGTAGTGTTTTGTGTAAAAGAAGATTTGAACTTTGTTTATGTTTCTTACAGGTTCCACTTATTTTGGGTGTTTGGGGAGGAAAAGGTCAAGGTAAATCATTCCAATGTGAGCTTGTCTTCAGAAAGATGGGAATCAAGTGAGTATTGCCTTAAATTACATACTATCTTTATTCGGATTTTTTTTTCCGAGGAAATGGACTACAGTTACTTCTAAAACAATCTCTCTACCTACATGAGATAGGGATAAGGTCTCTATATATACGGTTCACCCTCTCCAAACCTCACTTGTGGGATTTAATTTCACTAAGAATGTTGTTGCTGTATATAGACTAAAGTTACTTTTGAAAGAACCTATCTTACCTTCACGAGATAGGGGTAAAATCTGCATACAGTTTACCCTCTCTAGACCCCACTTGTAGGATTTCACTGAGAATGTTATTGTTGTAAGTGGATTAAAGTCTTCCGAATCATCCTTTCTAGCTACCTCCACGAGGTAGGTGTAAGGTCTACGTATAGTCTACTCTCTCCAAACTCGAATTGTGGGATTTCACTGAAAGTTACTTTAGAAACAACCTCTCTACCTTCACGAGCTAGAGGTAAGATTTGCATACAATCTTACCTCTCCAGACCTCACTTGTGGGATTTCAATGAGAATGTTGTTGTAAAAGTTACTTACAATGTTTGGTTTATTAAACTTGCAGCCCAATTATGATGAGTGCTGGAGAATTAGAAAGTGGAAATGCAGGAGAGCCAGCTAAATTGATCAGGCAAAGGTACAGAGAGGCCGCGGAAATCATCAGGAAGGGAAACATGTGTTGCCTCTTCATCAACGATCTTGATGCAGGAGCCGGTAGAATGGGTGGAACTACACAATACACTGTCAACAACCAAATGGTGAATGCTACACTCATGAACATTGCTGATAACCCGA</genome_strand>
        <mrna_strand>CTGCTTTCATGGACAAACTTGTTGTTCACATCACCAAGAACTTCTTGACATTGCCCAACATCAAG.........................................................................................GTTCCACTCATCTTGGGTGTATGGGGAGGCAAAGGTCAAGGTAAATCATTCCAATGTGAGCTTGTCTTCAGAAAGATGGGAATCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCATTATGATGAGTGCCAGAGAATTGGAAAGTGGAAATGCACGAGAGCCACCTAAATTGATTACGCAAAGGTACAGAGAGGCAGCTGAAATCATGAGGAAAGGAAACATGTGTTGTCTCTTCATCAACGATCTCCATGCATGAACTGGTAGAATGGGTGGAACTACCCAATACACCGTCAACAACCAGATGGTGAATGCCACCCTCATGAACATTGCTGACAACCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E710281" ref_strand="+" ref_description="SGN-E710281 [FA54DG12]">
      <seq>ctttcatggacaaacttgttgttcacatcaccaagaacttcttgacattgcccaacatcaaggttccactcatcttgggtgtatggggaggcaaaggtcaaggtaaatcattccaatgtgagcttgtcttcagaaagatgggaatcaaccccattatgatgagtgccggagaattggaaagtggaaatgcaggagagccagctaaattgattaggcaaaggtacagagaggcagctgaaatcatcaggaaaggaaacatgtgttgtctcttcatcaacgatctcgatgcaggagctggtagaatgggtggaactacccaatacaccgtcaacaaccagatggtgaatgccaccctcatgaacattgctgacaacccaacaaatgtccagctccctggtatgtacaacaagcaagagaacgccagggtacccattattgtcactggtaacgacttctccacattgtatgctcctcttatccgtgatggtcgcatggagaacttctactgggccaccaactagggaggatagaattggtgtttgcaagggtattttcagaactgacaacgtccctgaggaagctgttgtaaagattgtcgattcccttccctggaccatctattgatttctttggtgcttttgagggcaccgagtata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="42507" stop="44382"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42807" g_stop="42868" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42869" i_stop="42957" i_length="89">
            <donor d_prob="0.983" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42958" g_stop="43043" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="148" r_length="86" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43044" i_stop="43607" i_length="564">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43608" g_stop="44080" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="623" r_length="475" r_score="0.899"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44081" i_stop="44160" i_length="80">
            <donor d_prob="0.980" d_score="0.76"/>
            <acceptor a_prob="0.973" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44161" g_stop="44191" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="624" r_stop="656" r_length="33" r_score="0.742"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E710281" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710281" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42807" e_stop="42868"/>
          <exon e_start="42958" e_stop="43043"/>
          <exon e_start="43608" e_stop="44080"/>
          <exon e_start="44161" e_stop="44191"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCATGGACAAGCTTGTTGTTCACATCACCAAGAACTTCTTAACGTTGCCCAACATCAAGGTCTGTTAAAGAGATGTTTGTTAAAAAATTCTGGCTTAAGTAGTGTTTTGTGTAAAAGAAGATTTGAACTTTGTTTATGTTTCTTACAGGTTCCACTTATTTTGGGTGTTTGGGGAGGAAAAGGTCAAGGTAAATCATTCCAATGTGAGCTTGTCTTCAGAAAGATGGGAATCAAGTGAGTATTGCCTTAAATTACATACTATCTTTATTCGGATTTTTTTTTCCGAGGAAATGGACTACAGTTACTTCTAAAACAATCTCTCTACCTACATGAGATAGGGATAAGGTCTCTATATATACGGTTCACCCTCTCCAAACCTCACTTGTGGGATTTAATTTCACTAAGAATGTTGTTGCTGTATATAGACTAAAGTTACTTTTGAAAGAACCTATCTTACCTTCACGAGATAGGGGTAAAATCTGCATACAGTTTACCCTCTCTAGACCCCACTTGTAGGATTTCACTGAGAATGTTATTGTTGTAAGTGGATTAAAGTCTTCCGAATCATCCTTTCTAGCTACCTCCACGAGGTAGGTGTAAGGTCTACGTATAGTCTACTCTCTCCAAACTCGAATTGTGGGATTTCACTGAAAGTTACTTTAGAAACAACCTCTCTACCTTCACGAGCTAGAGGTAAGATTTGCATACAATCTTACCTCTCCAGACCTCACTTGTGGGATTTCAATGAGAATGTTGTTGTAAAAGTTACTTACAATGTTTGGTTTATTAAACTTGCAGCCCAATTATGATGAGTGCTGGAGAATTAGAAAGTGGAAATGCAGGAGAGCCAGCTAAATTGATCAGGCAAAGGTACAGAGAGGCCGCGGAAATCATCAGGAAGGGAAACATGTGTTGCCTCTTCATCAACGATCTTGATGCAGGAGCCGGTAGAATGGGTGGAACTACACAATACACTGTCAACAACCAAATGGTGAATGCTACACTCATGAACATTGCTGATAACCCGACGAATGTCCAACTCCCCGGTATGTACAACAAGCAAGAGAATGCCAGGGTACCTATTATTGTCACTGGTAACGATTTCTCCACATTGTATGCACCTCTTATCCGTGATGGTCGTATGGAGAAATTCTACTGGG-CACCAACTAGAGAAGACAGAATTGGTGTTTGCAAAGGTATTTTCAGGACTGACAGAGTTCCTGATGATGACATTGTCAAGATCGTCGA-TAGCTTCCCTGGACAATCTATTGGTAAGGAGACTAATAATATTTAACTTGTGTTAAAGATGAATAATAATATCAATGATCATATCTGAGTGGATCTTAAACAGATTTCTTCGGTGC-TCTGAGGGC-GAGAGTATA</genome_strand>
        <mrna_strand>CTTTCATGGACAAACTTGTTGTTCACATCACCAAGAACTTCTTGACATTGCCCAACATCAAG.........................................................................................GTTCCACTCATCTTGGGTGTATGGGGAGGCAAAGGTCAAGGTAAATCATTCCAATGTGAGCTTGTCTTCAGAAAGATGGGAATCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCATTATGATGAGTGCCGGAGAATTGGAAAGTGGAAATGCAGGAGAGCCAGCTAAATTGATTAGGCAAAGGTACAGAGAGGCAGCTGAAATCATCAGGAAAGGAAACATGTGTTGTCTCTTCATCAACGATCTCGATGCAGGAGCTGGTAGAATGGGTGGAACTACCCAATACACCGTCAACAACCAGATGGTGAATGCCACCCTCATGAACATTGCTGACAACCCAACAAATGTCCAGCTCCCTGGTATGTACAACAAGCAAGAGAACGCCAGGGTACCCATTATTGTCACTGGTAACGACTTCTCCACATTGTATGCTCCTCTTATCCGTGATGGTCGCATGGAGAACTTCTACTGGGCCACCAACTAGGGAGGATAGAATTGGTGTTTGCAAGGGTATTTTCAGAACTGACAACGTCCCTGAGGAAGCTGTTGTAAAGATTGTCGATTCCCTTCCCTGGACCATCTATTG................................................................................ATTTCTTTGGTGCTTTTGAGGGCACCGAGTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E321376" ref_strand="+" ref_description="SGN-E321376 [cTOB-23-N4]">
      <seq>agcttgatgttcacatcaccaagaacttcttaacgttgcccaacatcaaggttccacttattttgggtgtttggggaggaaaaggtcaaggtaaatcattccaatgtgagcttgtcttcataaagatgggaatcaacccaattatgatgagtgctggagaattagaaagtggaaatgcacgagagccagctaaattgatcaggcaaaggtacagaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="42519" stop="43988"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42819" g_stop="42868" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42869" i_stop="42957" i_length="89">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42958" g_stop="43043" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="136" r_length="86" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43044" i_stop="43607" i_length="564">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43608" g_stop="43688" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="217" r_length="81" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E321376" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>217</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321376" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42819" e_stop="42868"/>
          <exon e_start="42958" e_stop="43043"/>
          <exon e_start="43608" e_stop="43688"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTTGTTGTTCACATCACCAAGAACTTCTTAACGTTGCCCAACATCAAGGTCTGTTAAAGAGATGTTTGTTAAAAAATTCTGGCTTAAGTAGTGTTTTGTGTAAAAGAAGATTTGAACTTTGTTTATGTTTCTTACAGGTTCCACTTATTTTGGGTGTTTGGGGAGGAAAAGGTCAAGGTAAATCATTCCAATGTGAGCTTGTCTTCAGAAAGATGGGAATCAAGTGAGTATTGCCTTAAATTACATACTATCTTTATTCGGATTTTTTTTTCCGAGGAAATGGACTACAGTTACTTCTAAAACAATCTCTCTACCTACATGAGATAGGGATAAGGTCTCTATATATACGGTTCACCCTCTCCAAACCTCACTTGTGGGATTTAATTTCACTAAGAATGTTGTTGCTGTATATAGACTAAAGTTACTTTTGAAAGAACCTATCTTACCTTCACGAGATAGGGGTAAAATCTGCATACAGTTTACCCTCTCTAGACCCCACTTGTAGGATTTCACTGAGAATGTTATTGTTGTAAGTGGATTAAAGTCTTCCGAATCATCCTTTCTAGCTACCTCCACGAGGTAGGTGTAAGGTCTACGTATAGTCTACTCTCTCCAAACTCGAATTGTGGGATTTCACTGAAAGTTACTTTAGAAACAACCTCTCTACCTTCACGAGCTAGAGGTAAGATTTGCATACAATCTTACCTCTCCAGACCTCACTTGTGGGATTTCAATGAGAATGTTGTTGTAAAAGTTACTTACAATGTTTGGTTTATTAAACTTGCAGCCCAATTATGATGAGTGCTGGAGAATTAGAAAGTGGAAATGCAGGAGAGCCAGCTAAATTGATCAGGCAAAGGTACAGAGA</genome_strand>
        <mrna_strand>AGCTTGATGTTCACATCACCAAGAACTTCTTAACGTTGCCCAACATCAAG.........................................................................................GTTCCACTTATTTTGGGTGTTTGGGGAGGAAAAGGTCAAGGTAAATCATTCCAATGTGAGCTTGTCTTCATAAAGATGGGAATCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAATTATGATGAGTGCTGGAGAATTAGAAAGTGGAAATGCACGAGAGCCAGCTAAATTGATCAGGCAAAGGTACAGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E404576" ref_strand="+" ref_description="SGN-E404576 [PPC-14-B15]">
      <seq>acatcaccaagaacttcttgtcattgcccaacatcaaagttccactcatcttgggtgtatggggaggcaaaggtcaaggtaaatcattccaatgtgagcttgtcttcagaaagacgggaatcaaccccattatgatgagtgctggagaattggaaagtggaaatgcaggagagccagcaaaattgattaggcaaaggtacagagaggcagctgaaatcatcaggaaaggaaacatgtgttgtctcttcatcaacgatctcgatgcaggagcgggtagaatgggtggaactacccaatacaccgtcaacaaccagatggtgaatgccaccctcatgaacattgctgacaacccaacaaatgtccagctccccggtatgtacaacaagcaagagaactgcagggtccccattattgtcactggtaacgacttctccacattgtatgctcctcttatccgtgatggtcgtatggagaaagtctactgggcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="42531" stop="44272"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42831" g_stop="42868" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="0.895"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42869" i_stop="42957" i_length="89">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42958" g_stop="43043" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="124" r_length="86" r_score="0.942"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43044" i_stop="43607" i_length="564">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43608" g_stop="43972" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="489" r_length="365" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E404576" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E404576" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42831" e_stop="42868"/>
          <exon e_start="42958" e_stop="43043"/>
          <exon e_start="43608" e_stop="43972"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATCACCAAGAACTTCTTAACGTTGCCCAACATCAAGGTCTGTTAAAGAGATGTTTGTTAAAAAATTCTGGCTTAAGTAGTGTTTTGTGTAAAAGAAGATTTGAACTTTGTTTATGTTTCTTACAGGTTCCACTTATTTTGGGTGTTTGGGGAGGAAAAGGTCAAGGTAAATCATTCCAATGTGAGCTTGTCTTCAGAAAGATGGGAATCAAGTGAGTATTGCCTTAAATTACATACTATCTTTATTCGGATTTTTTTTTCCGAGGAAATGGACTACAGTTACTTCTAAAACAATCTCTCTACCTACATGAGATAGGGATAAGGTCTCTATATATACGGTTCACCCTCTCCAAACCTCACTTGTGGGATTTAATTTCACTAAGAATGTTGTTGCTGTATATAGACTAAAGTTACTTTTGAAAGAACCTATCTTACCTTCACGAGATAGGGGTAAAATCTGCATACAGTTTACCCTCTCTAGACCCCACTTGTAGGATTTCACTGAGAATGTTATTGTTGTAAGTGGATTAAAGTCTTCCGAATCATCCTTTCTAGCTACCTCCACGAGGTAGGTGTAAGGTCTACGTATAGTCTACTCTCTCCAAACTCGAATTGTGGGATTTCACTGAAAGTTACTTTAGAAACAACCTCTCTACCTTCACGAGCTAGAGGTAAGATTTGCATACAATCTTACCTCTCCAGACCTCACTTGTGGGATTTCAATGAGAATGTTGTTGTAAAAGTTACTTACAATGTTTGGTTTATTAAACTTGCAGCCCAATTATGATGAGTGCTGGAGAATTAGAAAGTGGAAATGCAGGAGAGCCAGCTAAATTGATCAGGCAAAGGTACAGAGAGGCCGCGGAAATCATCAGGAAGGGAAACATGTGTTGCCTCTTCATCAACGATCTTGATGCAGGAGCCGGTAGAATGGGTGGAACTACACAATACACTGTCAACAACCAAATGGTGAATGCTACACTCATGAACATTGCTGATAACCCGACGAATGTCCAACTCCCCGGTATGTACAACAAGCAAGAGAATGCCAGGGTACCTATTATTGTCACTGGTAACGATTTCTCCACATTGTATGCACCTCTTATCCGTGATGGTCGTATGGAGAAATTCTACTGGGCAC</genome_strand>
        <mrna_strand>ACATCACCAAGAACTTCTTGTCATTGCCCAACATCAAA.........................................................................................GTTCCACTCATCTTGGGTGTATGGGGAGGCAAAGGTCAAGGTAAATCATTCCAATGTGAGCTTGTCTTCAGAAAGACGGGAATCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCATTATGATGAGTGCTGGAGAATTGGAAAGTGGAAATGCAGGAGAGCCAGCAAAATTGATTAGGCAAAGGTACAGAGAGGCAGCTGAAATCATCAGGAAAGGAAACATGTGTTGTCTCTTCATCAACGATCTCGATGCAGGAGCGGGTAGAATGGGTGGAACTACCCAATACACCGTCAACAACCAGATGGTGAATGCCACCCTCATGAACATTGCTGACAACCCAACAAATGTCCAGCTCCCCGGTATGTACAACAAGCAAGAGAACTGCAGGGTCCCCATTATTGTCACTGGTAACGACTTCTCCACATTGTATGCTCCTCTTATCCGTGATGGTCGTATGGAGAAAGTCTACTGGGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E475489" ref_strand="+" ref_description="SGN-E475489 [cSTB-40-M17]">
      <seq>gttccactcatcttgggtgtatggggaggcaaaggtcaaggtaaatcattccaatgtgagcttgtcttcagaaagatgggaatcaaccccattatgatgagtgctggagaattggaaagtggaaatgcaagagagccagcaaaattgattaggcaaaggtacagagaggcaactgaaatcatcacgtaaggaaacatgtgttgtctcttcatcaacgatctcgatgcacgagctggtagaatgggtggaactacccaatacaccgtcaacaaccagatggtgaatgccaccctcatgaacattgctgacaacccaacaaatgtccagctccccggtatgtacaacaagccagagaactgcatggtccccattattgtcactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="42658" stop="44203"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42958" g_stop="43043" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43044" i_stop="43607" i_length="564">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43608" g_stop="43903" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="382" r_length="296" r_score="0.895"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E475489" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>382</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E475489" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42958" e_stop="43043"/>
          <exon e_start="43608" e_stop="43903"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCCACTTATTTTGGGTGTTTGGGGAGGAAAAGGTCAAGGTAAATCATTCCAATGTGAGCTTGTCTTCAGAAAGATGGGAATCAAGTGAGTATTGCCTTAAATTACATACTATCTTTATTCGGATTTTTTTTTCCGAGGAAATGGACTACAGTTACTTCTAAAACAATCTCTCTACCTACATGAGATAGGGATAAGGTCTCTATATATACGGTTCACCCTCTCCAAACCTCACTTGTGGGATTTAATTTCACTAAGAATGTTGTTGCTGTATATAGACTAAAGTTACTTTTGAAAGAACCTATCTTACCTTCACGAGATAGGGGTAAAATCTGCATACAGTTTACCCTCTCTAGACCCCACTTGTAGGATTTCACTGAGAATGTTATTGTTGTAAGTGGATTAAAGTCTTCCGAATCATCCTTTCTAGCTACCTCCACGAGGTAGGTGTAAGGTCTACGTATAGTCTACTCTCTCCAAACTCGAATTGTGGGATTTCACTGAAAGTTACTTTAGAAACAACCTCTCTACCTTCACGAGCTAGAGGTAAGATTTGCATACAATCTTACCTCTCCAGACCTCACTTGTGGGATTTCAATGAGAATGTTGTTGTAAAAGTTACTTACAATGTTTGGTTTATTAAACTTGCAGCCCAATTATGATGAGTGCTGGAGAATTAGAAAGTGGAAATGCAGGAGAGCCAGCTAAATTGATCAGGCAAAGGTACAGAGAGGCCGCGGAAATCATCAGGAAGGGAAACATGTGTTGCCTCTTCATCAACGATCTTGATGCAGGAGCCGGTAGAATGGGTGGAACTACACAATACACTGTCAACAACCAAATGGTGAATGCTACACTCATGAACATTGCTGATAACCCGACGAATGTCCAACTCCCCGGTATGTACAACAAGCAAGAGAATGCCAGGGTACCTATTATTGTCACTG</genome_strand>
        <mrna_strand>GTTCCACTCATCTTGGGTGTATGGGGAGGCAAAGGTCAAGGTAAATCATTCCAATGTGAGCTTGTCTTCAGAAAGATGGGAATCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCATTATGATGAGTGCTGGAGAATTGGAAAGTGGAAATGCAAGAGAGCCAGCAAAATTGATTAGGCAAAGGTACAGAGAGGCAACTGAAATCATCACGTAAGGAAACATGTGTTGTCTCTTCATCAACGATCTCGATGCACGAGCTGGTAGAATGGGTGGAACTACCCAATACACCGTCAACAACCAGATGGTGAATGCCACCCTCATGAACATTGCTGACAACCCAACAAATGTCCAGCTCCCCGGTATGTACAACAAGCCAGAGAACTGCATGGTCCCCATTATTGTCACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E406932" ref_strand="+" ref_description="SGN-E406932 [PPI-5-B9]">
      <seq>ctcatcttgggtgtatggggaggcaaaggtcaaggtaaatcattccaatgtgagcttgtcttcagaaagatgggaatcaaccccattatgatgagtgctggagaattggaaagtggaaatgcaggagagccagcaaaattgattaggcaaaggtacagagaggcagctgaaatcatcaggaaaggaaacatgtgttgtctcttcatcaacgatctcgatgcaggagctggtagaatgggtggaactacccaatacaccgtcaacaaccagatggtgaatgccaccctcatgaacattgctgacaacccaacaaatgtccagctccccggtatgtacaacaagcaagagaactgcagggtccccattattgtcactggtaacgacttctccacattgtatgctcctcttatccgtgatggtcgtatggagaagttctactgggcaccaactagggaggatagaattggtgtttgcaagggtattttcagaactgacaacgtgcctgaggaagctgttgtaaagattgtcgattccttccctggacaatctattgatttcttcggtgctttgagggcacgagtatatgacgatgaagtgaggaaatgggtttcaggaactggaattgaacaaattggtgacaaacttttgaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="42664" stop="44560"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42964" g_stop="43043" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43044" i_stop="43607" i_length="564">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43608" g_stop="44080" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="553" r_length="473" r_score="0.907"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44081" i_stop="44160" i_length="80">
            <donor d_prob="0.980" d_score="0.82"/>
            <acceptor a_prob="0.973" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44161" g_stop="44260" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="554" r_stop="653" r_length="100" r_score="0.880"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E406932" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E406932" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42964" e_stop="43043"/>
          <exon e_start="43608" e_stop="44080"/>
          <exon e_start="44161" e_stop="44260"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTATTTTGGGTGTTTGGGGAGGAAAAGGTCAAGGTAAATCATTCCAATGTGAGCTTGTCTTCAGAAAGATGGGAATCAAGTGAGTATTGCCTTAAATTACATACTATCTTTATTCGGATTTTTTTTTCCGAGGAAATGGACTACAGTTACTTCTAAAACAATCTCTCTACCTACATGAGATAGGGATAAGGTCTCTATATATACGGTTCACCCTCTCCAAACCTCACTTGTGGGATTTAATTTCACTAAGAATGTTGTTGCTGTATATAGACTAAAGTTACTTTTGAAAGAACCTATCTTACCTTCACGAGATAGGGGTAAAATCTGCATACAGTTTACCCTCTCTAGACCCCACTTGTAGGATTTCACTGAGAATGTTATTGTTGTAAGTGGATTAAAGTCTTCCGAATCATCCTTTCTAGCTACCTCCACGAGGTAGGTGTAAGGTCTACGTATAGTCTACTCTCTCCAAACTCGAATTGTGGGATTTCACTGAAAGTTACTTTAGAAACAACCTCTCTACCTTCACGAGCTAGAGGTAAGATTTGCATACAATCTTACCTCTCCAGACCTCACTTGTGGGATTTCAATGAGAATGTTGTTGTAAAAGTTACTTACAATGTTTGGTTTATTAAACTTGCAGCCCAATTATGATGAGTGCTGGAGAATTAGAAAGTGGAAATGCAGGAGAGCCAGCTAAATTGATCAGGCAAAGGTACAGAGAGGCCGCGGAAATCATCAGGAAGGGAAACATGTGTTGCCTCTTCATCAACGATCTTGATGCAGGAGCCGGTAGAATGGGTGGAACTACACAATACACTGTCAACAACCAAATGGTGAATGCTACACTCATGAACATTGCTGATAACCCGACGAATGTCCAACTCCCCGGTATGTACAACAAGCAAGAGAATGCCAGGGTACCTATTATTGTCACTGGTAACGATTTCTCCACATTGTATGCACCTCTTATCCGTGATGGTCGTATGGAGAAATTCTACTGGGCACCAACTAGAGAAGACAGAATTGGTGTTTGCAAAGGTATTTTCAGGACTGACAGAGTTCCTGATGATGACATTGTCAAGATCGTCGATAGCTTCCCTGGACAATCTATTGGTAAGGAGACTAATAATATTTAACTTGTGTTAAAGATGAATAATAATATCAATGATCATATCTGAGTGGATCTTAAACAGATTTCTTCGGTGCTCTGAGGGCGAGAGTATACGATGATGAAGTGAGGAAATGGATTGGAAGTACTGGAATTGAACAAATTGGAGAGAAACTTTTGAACTC</genome_strand>
        <mrna_strand>CTCATCTTGGGTGTATGGGGAGGCAAAGGTCAAGGTAAATCATTCCAATGTGAGCTTGTCTTCAGAAAGATGGGAATCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCATTATGATGAGTGCTGGAGAATTGGAAAGTGGAAATGCAGGAGAGCCAGCAAAATTGATTAGGCAAAGGTACAGAGAGGCAGCTGAAATCATCAGGAAAGGAAACATGTGTTGTCTCTTCATCAACGATCTCGATGCAGGAGCTGGTAGAATGGGTGGAACTACCCAATACACCGTCAACAACCAGATGGTGAATGCCACCCTCATGAACATTGCTGACAACCCAACAAATGTCCAGCTCCCCGGTATGTACAACAAGCAAGAGAACTGCAGGGTCCCCATTATTGTCACTGGTAACGACTTCTCCACATTGTATGCTCCTCTTATCCGTGATGGTCGTATGGAGAAGTTCTACTGGGCACCAACTAGGGAGGATAGAATTGGTGTTTGCAAGGGTATTTTCAGAACTGACAACGTGCCTGAGGAAGCTGTTGTAAAGATTGTCGATTCCTTCCCTGGACAATCTATTG................................................................................ATTTCTTCGGTGCTTTGAGGGCACGAGTATATGACGATGAAGTGAGGAAATGGGTTTCAGGAACTGGAATTGAACAAATTGGTGACAAACTTTTGAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E291095" ref_strand="+" ref_description="SGN-E291095 [cLET-8-G10]">
      <seq>ggaggcaaaggtcaaggtaaatcattccaatgtgagcttgtcttcagaaagatgggaatcaaccccattatgatgagtgccggagaattggaaagtggaaatgcaggagagccagctaaattgattaggcaaaggtacagagaggcagctgaaatcatcaggaaaggaaacatgtgttgtctcttcatcaacgatctcgatgcaggagctggtagaatgggtggaactacccaatacaccgtcaacaaccagatggtgaatgccaccctcatgaacattgctgacaacccaacaaatgtccagctccctggtatgtacaacaagcaagagaacgcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="42682" stop="44182"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42982" g_stop="43043" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43044" i_stop="43607" i_length="564">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43608" g_stop="43882" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="337" r_length="275" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E291095" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>337</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291095" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42982" e_stop="43043"/>
          <exon e_start="43608" e_stop="43882"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGGAAAAGGTCAAGGTAAATCATTCCAATGTGAGCTTGTCTTCAGAAAGATGGGAATCAAGTGAGTATTGCCTTAAATTACATACTATCTTTATTCGGATTTTTTTTTCCGAGGAAATGGACTACAGTTACTTCTAAAACAATCTCTCTACCTACATGAGATAGGGATAAGGTCTCTATATATACGGTTCACCCTCTCCAAACCTCACTTGTGGGATTTAATTTCACTAAGAATGTTGTTGCTGTATATAGACTAAAGTTACTTTTGAAAGAACCTATCTTACCTTCACGAGATAGGGGTAAAATCTGCATACAGTTTACCCTCTCTAGACCCCACTTGTAGGATTTCACTGAGAATGTTATTGTTGTAAGTGGATTAAAGTCTTCCGAATCATCCTTTCTAGCTACCTCCACGAGGTAGGTGTAAGGTCTACGTATAGTCTACTCTCTCCAAACTCGAATTGTGGGATTTCACTGAAAGTTACTTTAGAAACAACCTCTCTACCTTCACGAGCTAGAGGTAAGATTTGCATACAATCTTACCTCTCCAGACCTCACTTGTGGGATTTCAATGAGAATGTTGTTGTAAAAGTTACTTACAATGTTTGGTTTATTAAACTTGCAGCCCAATTATGATGAGTGCTGGAGAATTAGAAAGTGGAAATGCAGGAGAGCCAGCTAAATTGATCAGGCAAAGGTACAGAGAGGCCGCGGAAATCATCAGGAAGGGAAACATGTGTTGCCTCTTCATCAACGATCTTGATGCAGGAGCCGGTAGAATGGGTGGAACTACACAATACACTGTCAACAACCAAATGGTGAATGCTACACTCATGAACATTGCTGATAACCCGACGAATGTCCAACTCCCCGGTATGTACAACAAGCAAGAGAATGCCA</genome_strand>
        <mrna_strand>GGAGGCAAAGGTCAAGGTAAATCATTCCAATGTGAGCTTGTCTTCAGAAAGATGGGAATCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCATTATGATGAGTGCCGGAGAATTGGAAAGTGGAAATGCAGGAGAGCCAGCTAAATTGATTAGGCAAAGGTACAGAGAGGCAGCTGAAATCATCAGGAAAGGAAACATGTGTTGTCTCTTCATCAACGATCTCGATGCAGGAGCTGGTAGAATGGGTGGAACTACCCAATACACCGTCAACAACCAGATGGTGAATGCCACCCTCATGAACATTGCTGACAACCCAACAAATGTCCAGCTCCCTGGTATGTACAACAAGCAAGAGAACGCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E472699" ref_strand="+" ref_description="SGN-E472699 [cSTB-29-J15]">
      <seq>gtcaaggtaaatcattccaatgtgagcttgtcttcagaaagatgggaatcaaccccattatgatgagtgctggagaattggaaagtggaaatgcaggagagccagcaaaattgattaggcaaaggtacagagaggcagctgaaatcatcaggaaaggaaacatgtgttgtctcttcatcaacgatctcgatgcaggagcgggtagaatgggtggaactacccaatacaccgtcaacaaccagatggtgaatgccaccctcatgaacattgctgacaacccaacaaatgtccagctccccggtgtgtacaacaagcaagagaactgcagggtccccattattgtcactggtaacgacttctccacattgtatgctcctcttatccgtgatggtcgtatggagaagttctactgggcaccaactagggaggatagaattggtgtttgcaagggtattttcagaactgacaacgtgcctgatgaagctgttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="42692" stop="44345"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42992" g_stop="43043" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43044" i_stop="43607" i_length="564">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43608" g_stop="44045" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="490" r_length="438" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E472699" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E472699" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42992" e_stop="43043"/>
          <exon e_start="43608" e_stop="44045"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAAGGTAAATCATTCCAATGTGAGCTTGTCTTCAGAAAGATGGGAATCAAGTGAGTATTGCCTTAAATTACATACTATCTTTATTCGGATTTTTTTTTCCGAGGAAATGGACTACAGTTACTTCTAAAACAATCTCTCTACCTACATGAGATAGGGATAAGGTCTCTATATATACGGTTCACCCTCTCCAAACCTCACTTGTGGGATTTAATTTCACTAAGAATGTTGTTGCTGTATATAGACTAAAGTTACTTTTGAAAGAACCTATCTTACCTTCACGAGATAGGGGTAAAATCTGCATACAGTTTACCCTCTCTAGACCCCACTTGTAGGATTTCACTGAGAATGTTATTGTTGTAAGTGGATTAAAGTCTTCCGAATCATCCTTTCTAGCTACCTCCACGAGGTAGGTGTAAGGTCTACGTATAGTCTACTCTCTCCAAACTCGAATTGTGGGATTTCACTGAAAGTTACTTTAGAAACAACCTCTCTACCTTCACGAGCTAGAGGTAAGATTTGCATACAATCTTACCTCTCCAGACCTCACTTGTGGGATTTCAATGAGAATGTTGTTGTAAAAGTTACTTACAATGTTTGGTTTATTAAACTTGCAGCCCAATTATGATGAGTGCTGGAGAATTAGAAAGTGGAAATGCAGGAGAGCCAGCTAAATTGATCAGGCAAAGGTACAGAGAGGCCGCGGAAATCATCAGGAAGGGAAACATGTGTTGCCTCTTCATCAACGATCTTGATGCAGGAGCCGGTAGAATGGGTGGAACTACACAATACACTGTCAACAACCAAATGGTGAATGCTACACTCATGAACATTGCTGATAACCCGACGAATGTCCAACTCCCCGGTATGTACAACAAGCAAGAGAATGCCAGGGTACCTATTATTGTCACTGGTAACGATTTCTCCACATTGTATGCACCTCTTATCCGTGATGGTCGTATGGAGAAATTCTACTGGGCACCAACTAGAGAAGACAGAATTGGTGTTTGCAAAGGTATTTTCAGGACTGACAGAGTTCCTGATGATGACATTGT</genome_strand>
        <mrna_strand>GTCAAGGTAAATCATTCCAATGTGAGCTTGTCTTCAGAAAGATGGGAATCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCATTATGATGAGTGCTGGAGAATTGGAAAGTGGAAATGCAGGAGAGCCAGCAAAATTGATTAGGCAAAGGTACAGAGAGGCAGCTGAAATCATCAGGAAAGGAAACATGTGTTGTCTCTTCATCAACGATCTCGATGCAGGAGCGGGTAGAATGGGTGGAACTACCCAATACACCGTCAACAACCAGATGGTGAATGCCACCCTCATGAACATTGCTGACAACCCAACAAATGTCCAGCTCCCCGGTGTGTACAACAAGCAAGAGAACTGCAGGGTCCCCATTATTGTCACTGGTAACGACTTCTCCACATTGTATGCTCCTCTTATCCGTGATGGTCGTATGGAGAAGTTCTACTGGGCACCAACTAGGGAGGATAGAATTGGTGTTTGCAAGGGTATTTTCAGAACTGACAACGTGCCTGATGAAGCTGTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E289176" ref_strand="+" ref_description="SGN-E289176 [cLES-18-F12]">
      <seq>caatgtgagcttgtcttcagaaagatgggaatcaaccccattatgatgagtgccggagaattggaaagtggaaatgcaggagagccagctaaattgattaggcaaaggtacagagaggcagctgaaatcatcaggaaaggaaacatgtgttgtctcttcatcaacgatctcgatgcaggagctggtagaatgggtggaactacccaatacaccgtcaacaaccagatggtgaatgccaccctcatgaacattgctgacaacccaacaaatgtccagctccctggtatgtacaacaagcaagagaacgccagggtacccattattgtcactggtaacgacttctccacattgtatgctcctcttatccgtgatggtcgtatggagaagttctactgggcaccaactagggaggatagaattggtgtttgcaagggtattttcagaactgacaacgtccctgaggaagctgttgtaaagattgtcgattccttccctggacaatctattgatttcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="42709" stop="44382"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43009" g_stop="43043" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43044" i_stop="43607" i_length="564">
            <donor d_prob="0.985" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43608" g_stop="44080" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="508" r_length="473" r_score="0.911"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44081" i_stop="44160" i_length="80">
            <donor d_prob="0.980" d_score="0.82"/>
            <acceptor a_prob="0.973" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44161" g_stop="44168" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="516" r_length="8" r_score="0.875"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E289176" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289176" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43009" e_stop="43043"/>
          <exon e_start="43608" e_stop="44080"/>
          <exon e_start="44161" e_stop="44168"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATGTGAGCTTGTCTTCAGAAAGATGGGAATCAAGTGAGTATTGCCTTAAATTACATACTATCTTTATTCGGATTTTTTTTTCCGAGGAAATGGACTACAGTTACTTCTAAAACAATCTCTCTACCTACATGAGATAGGGATAAGGTCTCTATATATACGGTTCACCCTCTCCAAACCTCACTTGTGGGATTTAATTTCACTAAGAATGTTGTTGCTGTATATAGACTAAAGTTACTTTTGAAAGAACCTATCTTACCTTCACGAGATAGGGGTAAAATCTGCATACAGTTTACCCTCTCTAGACCCCACTTGTAGGATTTCACTGAGAATGTTATTGTTGTAAGTGGATTAAAGTCTTCCGAATCATCCTTTCTAGCTACCTCCACGAGGTAGGTGTAAGGTCTACGTATAGTCTACTCTCTCCAAACTCGAATTGTGGGATTTCACTGAAAGTTACTTTAGAAACAACCTCTCTACCTTCACGAGCTAGAGGTAAGATTTGCATACAATCTTACCTCTCCAGACCTCACTTGTGGGATTTCAATGAGAATGTTGTTGTAAAAGTTACTTACAATGTTTGGTTTATTAAACTTGCAGCCCAATTATGATGAGTGCTGGAGAATTAGAAAGTGGAAATGCAGGAGAGCCAGCTAAATTGATCAGGCAAAGGTACAGAGAGGCCGCGGAAATCATCAGGAAGGGAAACATGTGTTGCCTCTTCATCAACGATCTTGATGCAGGAGCCGGTAGAATGGGTGGAACTACACAATACACTGTCAACAACCAAATGGTGAATGCTACACTCATGAACATTGCTGATAACCCGACGAATGTCCAACTCCCCGGTATGTACAACAAGCAAGAGAATGCCAGGGTACCTATTATTGTCACTGGTAACGATTTCTCCACATTGTATGCACCTCTTATCCGTGATGGTCGTATGGAGAAATTCTACTGGGCACCAACTAGAGAAGACAGAATTGGTGTTTGCAAAGGTATTTTCAGGACTGACAGAGTTCCTGATGATGACATTGTCAAGATCGTCGATAGCTTCCCTGGACAATCTATTGGTAAGGAGACTAATAATATTTAACTTGTGTTAAAGATGAATAATAATATCAATGATCATATCTGAGTGGATCTTAAACAGATTTCTTC</genome_strand>
        <mrna_strand>CAATGTGAGCTTGTCTTCAGAAAGATGGGAATCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCATTATGATGAGTGCCGGAGAATTGGAAAGTGGAAATGCAGGAGAGCCAGCTAAATTGATTAGGCAAAGGTACAGAGAGGCAGCTGAAATCATCAGGAAAGGAAACATGTGTTGTCTCTTCATCAACGATCTCGATGCAGGAGCTGGTAGAATGGGTGGAACTACCCAATACACCGTCAACAACCAGATGGTGAATGCCACCCTCATGAACATTGCTGACAACCCAACAAATGTCCAGCTCCCTGGTATGTACAACAAGCAAGAGAACGCCAGGGTACCCATTATTGTCACTGGTAACGACTTCTCCACATTGTATGCTCCTCTTATCCGTGATGGTCGTATGGAGAAGTTCTACTGGGCACCAACTAGGGAGGATAGAATTGGTGTTTGCAAGGGTATTTTCAGAACTGACAACGTCCCTGAGGAAGCTGTTGTAAAGATTGTCGATTCCTTCCCTGGACAATCTATTG................................................................................ATTTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E282468" ref_strand="+" ref_description="SGN-E282468 [cLER-18-M17]">
      <seq>gggaatcaacccaattatgatgagtgctggagaattagaaagtggaaatgcaggagagccagctaaattgatcaggcaaaggtacagagaggccgcggaaatcatcaggaagggaaacatgtgttgcctcttcatcaacgatcttgatgcaggagccggtagaatgggtggaactacacaatacactgtcaacaaccaaatggtgaatgctacactcatgaacattgctgataacccgacgaatgtccaactccccggtatgtacaacaagcaagagaatgccagggtacctattattgtcactggtaacgatttctccacattgtatgcacctcttatccgtgatggtcgtatggagaaattctactgggcaccaactagagaagacagaattggtgtttgcaaaggtattttcaggactgacagagttcctgatgatgaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="43305" stop="44341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43608" g_stop="44041" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="443" r_length="434" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E282468" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282468" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43608" e_stop="44041"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAATTATGATGAGTGCTGGAGAATTAGAAAGTGGAAATGCAGGAGAGCCAGCTAAATTGATCAGGCAAAGGTACAGAGAGGCCGCGGAAATCATCAGGAAGGGAAACATGTGTTGCCTCTTCATCAACGATCTTGATGCAGGAGCCGGTAGAATGGGTGGAACTACACAATACACTGTCAACAACCAAATGGTGAATGCTACACTCATGAACATTGCTGATAACCCGACGAATGTCCAACTCCCCGGTATGTACAACAAGCAAGAGAATGCCAGGGTACCTATTATTGTCACTGGTAACGATTTCTCCACATTGTATGCACCTCTTATCCGTGATGGTCGTATGGAGAAATTCTACTGGGCACCAACTAGAGAAGACAGAATTGGTGTTTGCAAAGGTATTTTCAGGACTGACAGAGTTCCTGATGATGACA</genome_strand>
        <mrna_strand>CCCAATTATGATGAGTGCTGGAGAATTAGAAAGTGGAAATGCAGGAGAGCCAGCTAAATTGATCAGGCAAAGGTACAGAGAGGCCGCGGAAATCATCAGGAAGGGAAACATGTGTTGCCTCTTCATCAACGATCTTGATGCAGGAGCCGGTAGAATGGGTGGAACTACACAATACACTGTCAACAACCAAATGGTGAATGCTACACTCATGAACATTGCTGATAACCCGACGAATGTCCAACTCCCCGGTATGTACAACAAGCAAGAGAATGCCAGGGTACCTATTATTGTCACTGGTAACGATTTCTCCACATTGTATGCACCTCTTATCCGTGATGGTCGTATGGAGAAATTCTACTGGGCACCAACTAGAGAAGACAGAATTGGTGTTTGCAAAGGTATTTTCAGGACTGACAGAGTTCCTGATGATGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E293734" ref_strand="+" ref_description="SGN-E293734 [cLET-21-P6]">
      <seq>cattatgatgagtgccggagaattggaaagtggaaatgcaggagagccagctaaattgattaggcaaaggtacagagaggcagctgaaatcatcaggaaaggaaacatgtgttgtctcttcatcaacgatctcgatgcaggagctggtagaatgggtggaactacccaatacaccgtcaacaaccagatggtgaatgccaccctcatgaacattgctgacaacccaacaaatgtccagctccctggtatgtacaacaagcaagagaacgccagggtacccattattgtcactggtaacgacttctccacattgtatgctcctcttatccgtgatggtcgtatggagaagttctactgggcaccaactagggaggatagaattggtgtttgcaagggtattttcagaactgacaacgtccctgaggaagctgttgtaaagattgtcgattccttccctggacaatctattgatttctttggtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="43312" stop="44382"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43611" g_stop="44080" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="470" r_length="470" r_score="0.911"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44081" i_stop="44160" i_length="80">
            <donor d_prob="0.980" d_score="0.82"/>
            <acceptor a_prob="0.973" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44161" g_stop="44173" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="483" r_length="13" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E293734" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E293734" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43611" e_stop="44080"/>
          <exon e_start="44161" e_stop="44173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTATGATGAGTGCTGGAGAATTAGAAAGTGGAAATGCAGGAGAGCCAGCTAAATTGATCAGGCAAAGGTACAGAGAGGCCGCGGAAATCATCAGGAAGGGAAACATGTGTTGCCTCTTCATCAACGATCTTGATGCAGGAGCCGGTAGAATGGGTGGAACTACACAATACACTGTCAACAACCAAATGGTGAATGCTACACTCATGAACATTGCTGATAACCCGACGAATGTCCAACTCCCCGGTATGTACAACAAGCAAGAGAATGCCAGGGTACCTATTATTGTCACTGGTAACGATTTCTCCACATTGTATGCACCTCTTATCCGTGATGGTCGTATGGAGAAATTCTACTGGGCACCAACTAGAGAAGACAGAATTGGTGTTTGCAAAGGTATTTTCAGGACTGACAGAGTTCCTGATGATGACATTGTCAAGATCGTCGATAGCTTCCCTGGACAATCTATTGGTAAGGAGACTAATAATATTTAACTTGTGTTAAAGATGAATAATAATATCAATGATCATATCTGAGTGGATCTTAAACAGATTTCTTCGGTGC</genome_strand>
        <mrna_strand>CATTATGATGAGTGCCGGAGAATTGGAAAGTGGAAATGCAGGAGAGCCAGCTAAATTGATTAGGCAAAGGTACAGAGAGGCAGCTGAAATCATCAGGAAAGGAAACATGTGTTGTCTCTTCATCAACGATCTCGATGCAGGAGCTGGTAGAATGGGTGGAACTACCCAATACACCGTCAACAACCAGATGGTGAATGCCACCCTCATGAACATTGCTGACAACCCAACAAATGTCCAGCTCCCTGGTATGTACAACAAGCAAGAGAACGCCAGGGTACCCATTATTGTCACTGGTAACGACTTCTCCACATTGTATGCTCCTCTTATCCGTGATGGTCGTATGGAGAAGTTCTACTGGGCACCAACTAGGGAGGATAGAATTGGTGTTTGCAAGGGTATTTTCAGAACTGACAACGTCCCTGAGGAAGCTGTTGTAAAGATTGTCGATTCCTTCCCTGGACAATCTATTG................................................................................ATTTCTTTGGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E734594" ref_strand="+" ref_description="SGN-E734594 [LB13AC12]">
      <seq>cctatattgatcaggcaaaggtacagagaggccgcggaaatcatcaggaagggaaacatgtgttgcctcttcatcaacgatcttgatgcaggagccggtagaatgggtggaactacacaatacactgtcaacaaccaaatggtgaatgctacactcatgaacattgctgataacccgacgaatgtccaactccccggtatgtacaacaagcaagagaatgccagggtacctattattgtcactggtaacgatttctccacattgtatgcacctcttatccgtgatggtcgtatggagaaattctactgggcaccaactagagaagacagaattggtgtttgcaaaggtattttcaggactgacagagttcctgatgatgacattgtcaagatcgtcgatagcttccctggacaatctattgatttcttcggtgctctgagggcgagagtatacgatgatgaagtgaggaaatggattggaagtactggaattgaacaaattggagagaaacttttgaactcaagggatggaccaccaacatttgagcaaccaaagatgactatcgataagctcctcgagtacggcaacatgcttgttcaagagcaagagaatgttaagagagttcagttagctgacaagtaccttaaagaagctgcacttggtgatgcaaatgctgattccatcaacaatggatccttctttgctagctagacattttcgtcaatttaatcagttctgtttttttgcatcatttttgtcatgatattgtaatgatcttcgtgtgatgattgtattagtgaatataagtttgatcttaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="43361" stop="44858"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43660" g_stop="44080" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="421" r_length="421" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44081" i_stop="44160" i_length="80">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44161" g_stop="44558" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="819" r_length="398" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E734594" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>819</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734594" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43660" e_stop="44080"/>
          <exon e_start="44161" e_stop="44558"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTAAATTGATCAGGCAAAGGTACAGAGAGGCCGCGGAAATCATCAGGAAGGGAAACATGTGTTGCCTCTTCATCAACGATCTTGATGCAGGAGCCGGTAGAATGGGTGGAACTACACAATACACTGTCAACAACCAAATGGTGAATGCTACACTCATGAACATTGCTGATAACCCGACGAATGTCCAACTCCCCGGTATGTACAACAAGCAAGAGAATGCCAGGGTACCTATTATTGTCACTGGTAACGATTTCTCCACATTGTATGCACCTCTTATCCGTGATGGTCGTATGGAGAAATTCTACTGGGCACCAACTAGAGAAGACAGAATTGGTGTTTGCAAAGGTATTTTCAGGACTGACAGAGTTCCTGATGATGACATTGTCAAGATCGTCGATAGCTTCCCTGGACAATCTATTGGTAAGGAGACTAATAATATTTAACTTGTGTTAAAGATGAATAATAATATCAATGATCATATCTGAGTGGATCTTAAACAGATTTCTTCGGTGCTCTGAGGGCGAGAGTATACGATGATGAAGTGAGGAAATGGATTGGAAGTACTGGAATTGAACAAATTGGAGAGAAACTTTTGAACTCAAGGGATGGACCACCAACATTTGAGCAACCAAAGATGACTATCGATAAGCTCCTCGAGTACGGCAACATGCTTGTTCAAGAGCAAGAGAATGTTAAGAGAGTTCAGTTAGCTGACAAGTACCTTAAAGAAGCTGCACTTGGTGATGCAAATGCTGATTCCATCAACAATGGATCCTTCTTTGCTAGCTAGACATTTTCGTCAATTTAATCAGTTCTGTTTTTTTGCATCATTTTTGTCATGATATTGTAATGATCTTCGTGTGATGATTGTATTAGTGAATATAAGTTTGATCTTATA</genome_strand>
        <mrna_strand>CCTATATTGATCAGGCAAAGGTACAGAGAGGCCGCGGAAATCATCAGGAAGGGAAACATGTGTTGCCTCTTCATCAACGATCTTGATGCAGGAGCCGGTAGAATGGGTGGAACTACACAATACACTGTCAACAACCAAATGGTGAATGCTACACTCATGAACATTGCTGATAACCCGACGAATGTCCAACTCCCCGGTATGTACAACAAGCAAGAGAATGCCAGGGTACCTATTATTGTCACTGGTAACGATTTCTCCACATTGTATGCACCTCTTATCCGTGATGGTCGTATGGAGAAATTCTACTGGGCACCAACTAGAGAAGACAGAATTGGTGTTTGCAAAGGTATTTTCAGGACTGACAGAGTTCCTGATGATGACATTGTCAAGATCGTCGATAGCTTCCCTGGACAATCTATTG................................................................................ATTTCTTCGGTGCTCTGAGGGCGAGAGTATACGATGATGAAGTGAGGAAATGGATTGGAAGTACTGGAATTGAACAAATTGGAGAGAAACTTTTGAACTCAAGGGATGGACCACCAACATTTGAGCAACCAAAGATGACTATCGATAAGCTCCTCGAGTACGGCAACATGCTTGTTCAAGAGCAAGAGAATGTTAAGAGAGTTCAGTTAGCTGACAAGTACCTTAAAGAAGCTGCACTTGGTGATGCAAATGCTGATTCCATCAACAATGGATCCTTCTTTGCTAGCTAGACATTTTCGTCAATTTAATCAGTTCTGTTTTTTTGCATCATTTTTGTCATGATATTGTAATGATCTTCGTGTGATGATTGTATTAGTGAATATAAGTTTGATCTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E329178" ref_strand="+" ref_description="SGN-E329178 [cTOD-2-H5]">
      <seq>gaaatcatcaggaaaggaaacatgtgttgtctcttcatcaacgatctcgatgcaggagctggtagaatgggtggaactacccaatacaccgtcaacaaccagatggtgaatgccaccctcatgaacattgctgacaacccaacaaatgtccagctccctggtatgtacaacaagcaagagaacgccagggtacccattattgtcactggtaacgacttctccacattgtatgctcctcttatccgtgatggtcgtatggagaagttctactgggcaccaactagggaggatagaattggtgtttgcaagggtattttcagaactgacaacgtccctgaggaagctgttgtaaagattgtcgattccttccctggacaatctattgatttcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="43396" stop="44382"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43696" g_stop="44080" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.906"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44081" i_stop="44160" i_length="80">
            <donor d_prob="0.980" d_score="0.82"/>
            <acceptor a_prob="0.973" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44161" g_stop="44168" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="393" r_length="8" r_score="0.875"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E329178" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>393</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329178" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43696" e_stop="44080"/>
          <exon e_start="44161" e_stop="44168"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATCATCAGGAAGGGAAACATGTGTTGCCTCTTCATCAACGATCTTGATGCAGGAGCCGGTAGAATGGGTGGAACTACACAATACACTGTCAACAACCAAATGGTGAATGCTACACTCATGAACATTGCTGATAACCCGACGAATGTCCAACTCCCCGGTATGTACAACAAGCAAGAGAATGCCAGGGTACCTATTATTGTCACTGGTAACGATTTCTCCACATTGTATGCACCTCTTATCCGTGATGGTCGTATGGAGAAATTCTACTGGGCACCAACTAGAGAAGACAGAATTGGTGTTTGCAAAGGTATTTTCAGGACTGACAGAGTTCCTGATGATGACATTGTCAAGATCGTCGATAGCTTCCCTGGACAATCTATTGGTAAGGAGACTAATAATATTTAACTTGTGTTAAAGATGAATAATAATATCAATGATCATATCTGAGTGGATCTTAAACAGATTTCTTC</genome_strand>
        <mrna_strand>GAAATCATCAGGAAAGGAAACATGTGTTGTCTCTTCATCAACGATCTCGATGCAGGAGCTGGTAGAATGGGTGGAACTACCCAATACACCGTCAACAACCAGATGGTGAATGCCACCCTCATGAACATTGCTGACAACCCAACAAATGTCCAGCTCCCTGGTATGTACAACAAGCAAGAGAACGCCAGGGTACCCATTATTGTCACTGGTAACGACTTCTCCACATTGTATGCTCCTCTTATCCGTGATGGTCGTATGGAGAAGTTCTACTGGGCACCAACTAGGGAGGATAGAATTGGTGTTTGCAAGGGTATTTTCAGAACTGACAACGTCCCTGAGGAAGCTGTTGTAAAGATTGTCGATTCCTTCCCTGGACAATCTATTG................................................................................ATTTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E279459" ref_strand="+" ref_description="SGN-E279459 [cLER-11-N14]">
      <seq>aggaagggaaacatgtgttgcctcttcatcaacgatcttgatgcaggagccggtagaatgggtggaactacacaatacactgtcaacaaccaaatggtgaatgctacactcatgaacattgctgataacccgacgaatgtccaactccccggtatgtacaacaagcaagagaatgccagggtacctattattgtcactggtaacgatttctccacattgtatgcacctcttatccgtgatggtcgtatggagaaattctactgggcaccaactagagaagacagaattggtgtttgcaaaggtattttcaggactgacagagttcctgatgatgacattgtcaagatcgtcgatagcttccctggacaatctattgatttcttcggtgctctgagggcgagagtatacgatgatgaagtgaggaaatggattggaagtactggaattgaacaaattggagagaaacttttgaactcaagggatggaccaccaacatttgagcaaccaaagatgactatcgataagctcctcgagtacggcaacatgcttgttcaagagcaagagaatgttaagagagttcagttagctgacaagtaccttaaagaagctgcacttggtgatgcaaatgctgattccatcaacaatggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="43405" stop="44733"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43705" g_stop="44080" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="376" r_length="376" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44081" i_stop="44160" i_length="80">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44161" g_stop="44433" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="649" r_length="273" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E279459" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279459" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43705" e_stop="44080"/>
          <exon e_start="44161" e_stop="44433"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAAGGGAAACATGTGTTGCCTCTTCATCAACGATCTTGATGCAGGAGCCGGTAGAATGGGTGGAACTACACAATACACTGTCAACAACCAAATGGTGAATGCTACACTCATGAACATTGCTGATAACCCGACGAATGTCCAACTCCCCGGTATGTACAACAAGCAAGAGAATGCCAGGGTACCTATTATTGTCACTGGTAACGATTTCTCCACATTGTATGCACCTCTTATCCGTGATGGTCGTATGGAGAAATTCTACTGGGCACCAACTAGAGAAGACAGAATTGGTGTTTGCAAAGGTATTTTCAGGACTGACAGAGTTCCTGATGATGACATTGTCAAGATCGTCGATAGCTTCCCTGGACAATCTATTGGTAAGGAGACTAATAATATTTAACTTGTGTTAAAGATGAATAATAATATCAATGATCATATCTGAGTGGATCTTAAACAGATTTCTTCGGTGCTCTGAGGGCGAGAGTATACGATGATGAAGTGAGGAAATGGATTGGAAGTACTGGAATTGAACAAATTGGAGAGAAACTTTTGAACTCAAGGGATGGACCACCAACATTTGAGCAACCAAAGATGACTATCGATAAGCTCCTCGAGTACGGCAACATGCTTGTTCAAGAGCAAGAGAATGTTAAGAGAGTTCAGTTAGCTGACAAGTACCTTAAAGAAGCTGCACTTGGTGATGCAAATGCTGATTCCATCAACAATGGAT</genome_strand>
        <mrna_strand>AGGAAGGGAAACATGTGTTGCCTCTTCATCAACGATCTTGATGCAGGAGCCGGTAGAATGGGTGGAACTACACAATACACTGTCAACAACCAAATGGTGAATGCTACACTCATGAACATTGCTGATAACCCGACGAATGTCCAACTCCCCGGTATGTACAACAAGCAAGAGAATGCCAGGGTACCTATTATTGTCACTGGTAACGATTTCTCCACATTGTATGCACCTCTTATCCGTGATGGTCGTATGGAGAAATTCTACTGGGCACCAACTAGAGAAGACAGAATTGGTGTTTGCAAAGGTATTTTCAGGACTGACAGAGTTCCTGATGATGACATTGTCAAGATCGTCGATAGCTTCCCTGGACAATCTATTG................................................................................ATTTCTTCGGTGCTCTGAGGGCGAGAGTATACGATGATGAAGTGAGGAAATGGATTGGAAGTACTGGAATTGAACAAATTGGAGAGAAACTTTTGAACTCAAGGGATGGACCACCAACATTTGAGCAACCAAAGATGACTATCGATAAGCTCCTCGAGTACGGCAACATGCTTGTTCAAGAGCAAGAGAATGTTAAGAGAGTTCAGTTAGCTGACAAGTACCTTAAAGAAGCTGCACTTGGTGATGCAAATGCTGATTCCATCAACAATGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E293854" ref_strand="+" ref_description="SGN-E293854 [cLET-37-K16]">
      <seq>caacgatctcgatgcaggagctggtagaatgggtggaactacccaatacaccgtcaacaaccagatggtgaatgccaccctcatgaacattgctgacaacccaacaaatgtccagctccctggtatgtacaacaagcaagagaacgccagggtacccattattgtcactggtaacgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="43434" stop="44210"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43734" g_stop="43911" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E293854" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>178</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E293854" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43734" e_stop="43911"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACGATCTTGATGCAGGAGCCGGTAGAATGGGTGGAACTACACAATACACTGTCAACAACCAAATGGTGAATGCTACACTCATGAACATTGCTGATAACCCGACGAATGTCCAACTCCCCGGTATGTACAACAAGCAAGAGAATGCCAGGGTACCTATTATTGTCACTGGTAACGAT</genome_strand>
        <mrna_strand>CAACGATCTCGATGCAGGAGCTGGTAGAATGGGTGGAACTACCCAATACACCGTCAACAACCAGATGGTGAATGCCACCCTCATGAACATTGCTGACAACCCAACAAATGTCCAGCTCCCTGGTATGTACAACAAGCAAGAGAACGCCAGGGTACCCATTATTGTCACTGGTAACGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E371572" ref_strand="+" ref_description="SGN-E371572 [TUS-29-E8](-)">
      <seq>tcatgaacattgctgataacccgacgaatgtccaactccccggtatgtacaacaagcaagagaatgccagggtacctattattgtcactggtaacgatttctccacattgtatgcacctcttatccgtgatggtcgtatggagaaattctactgggcaccaactagagaagacagaattggtgtttgcaaaggtattttcaggactgacagagttcctgatgatgacattgtcaagatcgtcgatagcttccctggacaatctattgatttcttcggtgctctgagggcgagagtatacgatgatgaagtgaggaaatggattggaagtactggaattgaacaaattggagagaaacttttgaactcaagggatggaccaccaacatttgagcaaccaaagatgactatcgataagctcctcgagtacggcaacatgcttgttcaagagcaagagaatgttaagagagttcagttagctgacaagtaccttaaagaagctgcacttggtgatgcaaatgctgattccatcaacaatggatccttctttgctagctagacattttcgtcaatttaatcagttctgtttttttgcatcatttttgtcatgatattgtaatgatcttcgtgtgatgattgtattagtgaatataaataaaatataataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="43514" stop="44847"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43814" g_stop="44080" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="267" r_length="267" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44081" i_stop="44160" i_length="80">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44161" g_stop="44545" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="652" r_length="385" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E371572" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371572" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43814" e_stop="44080"/>
          <exon e_start="44161" e_stop="44545"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGAACATTGCTGATAACCCGACGAATGTCCAACTCCCCGGTATGTACAACAAGCAAGAGAATGCCAGGGTACCTATTATTGTCACTGGTAACGATTTCTCCACATTGTATGCACCTCTTATCCGTGATGGTCGTATGGAGAAATTCTACTGGGCACCAACTAGAGAAGACAGAATTGGTGTTTGCAAAGGTATTTTCAGGACTGACAGAGTTCCTGATGATGACATTGTCAAGATCGTCGATAGCTTCCCTGGACAATCTATTGGTAAGGAGACTAATAATATTTAACTTGTGTTAAAGATGAATAATAATATCAATGATCATATCTGAGTGGATCTTAAACAGATTTCTTCGGTGCTCTGAGGGCGAGAGTATACGATGATGAAGTGAGGAAATGGATTGGAAGTACTGGAATTGAACAAATTGGAGAGAAACTTTTGAACTCAAGGGATGGACCACCAACATTTGAGCAACCAAAGATGACTATCGATAAGCTCCTCGAGTACGGCAACATGCTTGTTCAAGAGCAAGAGAATGTTAAGAGAGTTCAGTTAGCTGACAAGTACCTTAAAGAAGCTGCACTTGGTGATGCAAATGCTGATTCCATCAACAATGGATCCTTCTTTGCTAGCTAGACATTTTCGTCAATTTAATCAGTTCTGTTTTTTTGCATCATTTTTGTCATGATATTGTAATGATCTTCGTGTGATGATTGTATTAGTGAATATAA</genome_strand>
        <mrna_strand>TCATGAACATTGCTGATAACCCGACGAATGTCCAACTCCCCGGTATGTACAACAAGCAAGAGAATGCCAGGGTACCTATTATTGTCACTGGTAACGATTTCTCCACATTGTATGCACCTCTTATCCGTGATGGTCGTATGGAGAAATTCTACTGGGCACCAACTAGAGAAGACAGAATTGGTGTTTGCAAAGGTATTTTCAGGACTGACAGAGTTCCTGATGATGACATTGTCAAGATCGTCGATAGCTTCCCTGGACAATCTATTG................................................................................ATTTCTTCGGTGCTCTGAGGGCGAGAGTATACGATGATGAAGTGAGGAAATGGATTGGAAGTACTGGAATTGAACAAATTGGAGAGAAACTTTTGAACTCAAGGGATGGACCACCAACATTTGAGCAACCAAAGATGACTATCGATAAGCTCCTCGAGTACGGCAACATGCTTGTTCAAGAGCAAGAGAATGTTAAGAGAGTTCAGTTAGCTGACAAGTACCTTAAAGAAGCTGCACTTGGTGATGCAAATGCTGATTCCATCAACAATGGATCCTTCTTTGCTAGCTAGACATTTTCGTCAATTTAATCAGTTCTGTTTTTTTGCATCATTTTTGTCATGATATTGTAATGATCTTCGTGTGATGATTGTATTAGTGAATATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E284278" ref_strand="+" ref_description="SGN-E284278 [cLER-16-L1]">
      <seq>gaatgtccaactccccggtatgtacaacaagcaagagaatgccagggtacctattattgtcactggtaacgatttctccacattgtatgcacctcttatccgtgatggtcgtatggagaaattctactgggcaccaactagagaagacagaattggtgtttgcaaaggtattttcaggactgacagagttcctgatgatgacattgtcaagatcgtcgatagcttccctggacaatctattgatttcttcggtgctctgagggcgagagtatacgatgatgaagtgaggaaatggattggaagtactggaattgaacaaattggagagaaacttttgaactcaagggatggaccaccaacatttgagcaaccaaagatgactatcgataagctcctcgagtacggcaacatgcttgttcaagagcaagagaatgttaagagagttcagttagctgacaagtaccttaaagaagctgcacttggtgatgcaaatgctgattccatcaacaatggatccttctttgctagctagacattttcgtcaatttaatcagttctgtttttttgcatcatttttgtcatgatattgtaatgatcttcgtgtgatgattgtattaatgaatataagtttgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="43539" stop="44853"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43839" g_stop="44080" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44081" i_stop="44160" i_length="80">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44161" g_stop="44553" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="635" r_length="393" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E284278" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284278" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43839" e_stop="44080"/>
          <exon e_start="44161" e_stop="44553"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATGTCCAACTCCCCGGTATGTACAACAAGCAAGAGAATGCCAGGGTACCTATTATTGTCACTGGTAACGATTTCTCCACATTGTATGCACCTCTTATCCGTGATGGTCGTATGGAGAAATTCTACTGGGCACCAACTAGAGAAGACAGAATTGGTGTTTGCAAAGGTATTTTCAGGACTGACAGAGTTCCTGATGATGACATTGTCAAGATCGTCGATAGCTTCCCTGGACAATCTATTGGTAAGGAGACTAATAATATTTAACTTGTGTTAAAGATGAATAATAATATCAATGATCATATCTGAGTGGATCTTAAACAGATTTCTTCGGTGCTCTGAGGGCGAGAGTATACGATGATGAAGTGAGGAAATGGATTGGAAGTACTGGAATTGAACAAATTGGAGAGAAACTTTTGAACTCAAGGGATGGACCACCAACATTTGAGCAACCAAAGATGACTATCGATAAGCTCCTCGAGTACGGCAACATGCTTGTTCAAGAGCAAGAGAATGTTAAGAGAGTTCAGTTAGCTGACAAGTACCTTAAAGAAGCTGCACTTGGTGATGCAAATGCTGATTCCATCAACAATGGATCCTTCTTTGCTAGCTAGACATTTTCGTCAATTTAATCAGTTCTGTTTTTTTGCATCATTTTTGTCATGATATTGTAATGATCTTCGTGTGATGATTGTATTAGTGAATATAAGTTTGATC</genome_strand>
        <mrna_strand>GAATGTCCAACTCCCCGGTATGTACAACAAGCAAGAGAATGCCAGGGTACCTATTATTGTCACTGGTAACGATTTCTCCACATTGTATGCACCTCTTATCCGTGATGGTCGTATGGAGAAATTCTACTGGGCACCAACTAGAGAAGACAGAATTGGTGTTTGCAAAGGTATTTTCAGGACTGACAGAGTTCCTGATGATGACATTGTCAAGATCGTCGATAGCTTCCCTGGACAATCTATTG................................................................................ATTTCTTCGGTGCTCTGAGGGCGAGAGTATACGATGATGAAGTGAGGAAATGGATTGGAAGTACTGGAATTGAACAAATTGGAGAGAAACTTTTGAACTCAAGGGATGGACCACCAACATTTGAGCAACCAAAGATGACTATCGATAAGCTCCTCGAGTACGGCAACATGCTTGTTCAAGAGCAAGAGAATGTTAAGAGAGTTCAGTTAGCTGACAAGTACCTTAAAGAAGCTGCACTTGGTGATGCAAATGCTGATTCCATCAACAATGGATCCTTCTTTGCTAGCTAGACATTTTCGTCAATTTAATCAGTTCTGTTTTTTTGCATCATTTTTGTCATGATATTGTAATGATCTTCGTGTGATGATTGTATTAATGAATATAAGTTTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E218631" ref_strand="+" ref_description="SGN-E218631 [cLEL-18-L9](-)">
      <seq>tgtttgcaaaggtattttcaggactgacagagttcctgatgatgacattgtcaagatcgtcgatagcttccctggacaatctattgatttcttcggtgctctgagggcgagagtatacgatgatgaagtgaggaaatggattggaagtactggaattgaacaaattggagagaaacttttgaactcaagggatggaccaccaacatttgagcaaccaaagatgactatcgataagctcctcgagtacggcaacatgcttgttcaagagcaagagaatgttaagagagttcagttagctgacaagtaccttaaagaagctgcacttggtgatgcaaatgctgattccatcaacaatggatccttctttgctagctagacattttcgtcaatttaatcagttctgtttttttgcatcatttttgtcatgatattgtaatgatcttcgtgtgatgattgtattagtgnatnnaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="43695" stop="44845"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43995" g_stop="44080" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44081" i_stop="44160" i_length="80">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44161" g_stop="44545" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="471" r_length="385" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="472" polyA_stop="484"/>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E218631" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E218631" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43995" e_stop="44080"/>
          <exon e_start="44161" e_stop="44545"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTGCAAAGGTATTTTCAGGACTGACAGAGTTCCTGATGATGACATTGTCAAGATCGTCGATAGCTTCCCTGGACAATCTATTGGTAAGGAGACTAATAATATTTAACTTGTGTTAAAGATGAATAATAATATCAATGATCATATCTGAGTGGATCTTAAACAGATTTCTTCGGTGCTCTGAGGGCGAGAGTATACGATGATGAAGTGAGGAAATGGATTGGAAGTACTGGAATTGAACAAATTGGAGAGAAACTTTTGAACTCAAGGGATGGACCACCAACATTTGAGCAACCAAAGATGACTATCGATAAGCTCCTCGAGTACGGCAACATGCTTGTTCAAGAGCAAGAGAATGTTAAGAGAGTTCAGTTAGCTGACAAGTACCTTAAAGAAGCTGCACTTGGTGATGCAAATGCTGATTCCATCAACAATGGATCCTTCTTTGCTAGCTAGACATTTTCGTCAATTTAATCAGTTCTGTTTTTTTGCATCATTTTTGTCATGATATTGTAATGATCTTCGTGTGATGATTGTATTAGTGAATATAA</genome_strand>
        <mrna_strand>TGTTTGCAAAGGTATTTTCAGGACTGACAGAGTTCCTGATGATGACATTGTCAAGATCGTCGATAGCTTCCCTGGACAATCTATTG................................................................................ATTTCTTCGGTGCTCTGAGGGCGAGAGTATACGATGATGAAGTGAGGAAATGGATTGGAAGTACTGGAATTGAACAAATTGGAGAGAAACTTTTGAACTCAAGGGATGGACCACCAACATTTGAGCAACCAAAGATGACTATCGATAAGCTCCTCGAGTACGGCAACATGCTTGTTCAAGAGCAAGAGAATGTTAAGAGAGTTCAGTTAGCTGACAAGTACCTTAAAGAAGCTGCACTTGGTGATGCAAATGCTGATTCCATCAACAATGGATCCTTCTTTGCTAGCTAGACATTTTCGTCAATTTAATCAGTTCTGTTTTTTTGCATCATTTTTGTCATGATATTGTAATGATCTTCGTGTGATGATTGTATTAGTGNATNNAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E735021" ref_strand="+" ref_description="SGN-E735021 [LB14AH05]">
      <seq>ttcatgactgacagagttcctgatgatgacattgtcaagatcgtcgatagcttccctggacaatctattgatttcttcggtgctctgagggcgagagtatacgatgatgaagtgaggaaatggattggaagtactggaattgaacaaattggagagaaacttttgaactcaagggatggaccaccaacatttgagcaaccaaagatgactatcgataagctcctcgagtacggcaacatgcttgttcaagagcaagagaatgttaagagagttcagttagctgacaagtaccttaaagaagctgcacttggtgatgcaaatgctgattccatcaacaatggatccttctttgctagctagacattttcgtcaatttaatcagttctgtttttttgcatcatttttgtcatgatattgtaatgatcttcgtgtgatgattgtattagtgaatataagtttgatcttatatccgcgcgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="43711" stop="44867"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44011" g_stop="44080" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44081" i_stop="44160" i_length="80">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44161" g_stop="44566" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="476" r_length="406" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="477" polyA_stop="489"/>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E735021" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735021" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44011" e_stop="44080"/>
          <exon e_start="44161" e_stop="44566"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGGACTGACAGAGTTCCTGATGATGACATTGTCAAGATCGTCGATAGCTTCCCTGGACAATCTATTGGTAAGGAGACTAATAATATTTAACTTGTGTTAAAGATGAATAATAATATCAATGATCATATCTGAGTGGATCTTAAACAGATTTCTTCGGTGCTCTGAGGGCGAGAGTATACGATGATGAAGTGAGGAAATGGATTGGAAGTACTGGAATTGAACAAATTGGAGAGAAACTTTTGAACTCAAGGGATGGACCACCAACATTTGAGCAACCAAAGATGACTATCGATAAGCTCCTCGAGTACGGCAACATGCTTGTTCAAGAGCAAGAGAATGTTAAGAGAGTTCAGTTAGCTGACAAGTACCTTAAAGAAGCTGCACTTGGTGATGCAAATGCTGATTCCATCAACAATGGATCCTTCTTTGCTAGCTAGACATTTTCGTCAATTTAATCAGTTCTGTTTTTTTGCATCATTTTTGTCATGATATTGTAATGATCTTCGTGTGATGATTGTATTAGTGAATATAAGTTTGATCTTATATCCGCGCG</genome_strand>
        <mrna_strand>TTCATGACTGACAGAGTTCCTGATGATGACATTGTCAAGATCGTCGATAGCTTCCCTGGACAATCTATTG................................................................................ATTTCTTCGGTGCTCTGAGGGCGAGAGTATACGATGATGAAGTGAGGAAATGGATTGGAAGTACTGGAATTGAACAAATTGGAGAGAAACTTTTGAACTCAAGGGATGGACCACCAACATTTGAGCAACCAAAGATGACTATCGATAAGCTCCTCGAGTACGGCAACATGCTTGTTCAAGAGCAAGAGAATGTTAAGAGAGTTCAGTTAGCTGACAAGTACCTTAAAGAAGCTGCACTTGGTGATGCAAATGCTGATTCCATCAACAATGGATCCTTCTTTGCTAGCTAGACATTTTCGTCAATTTAATCAGTTCTGTTTTTTTGCATCATTTTTGTCATGATATTGTAATGATCTTCGTGTGATGATTGTATTAGTGAATATAAGTTTGATCTTATATCCGCGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E230008" ref_strand="+" ref_description="SGN-E230008 [cLEL-33-C6](-)">
      <seq>atgatgacattgtcaagatcgtcgatagcttccctggacaatctattgatttcttcggtgctctgagggcgagagtatncgatgatgaagtgaggaaatggattggaagtactggaattgaacaaattggagagaaacttttgaactcaagggatggaccacccaacatttgagcaaccaaagatgactatcgataagctcctcgagtacggcaacatgcttgttcaagagcaagagaatgttaagagagttcagttagctgacaagtaccttaaagaagctgcacttggtgatgcaaatgctgattccatcaacaatggatccttctttgctagctagacattttcgtcaatttaatcagttctgtttttttgcatcatttttgtcatgatattgtaatgatcttcgtgtgatgattgtattagtgaatataagtttgatcttaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="43733" stop="103899"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44033" g_stop="44080" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44081" i_stop="44160" i_length="80">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44161" g_stop="44578" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="467" r_length="419" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E230008" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E230008" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44033" e_stop="44080"/>
          <exon e_start="44161" e_stop="44578"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATGACATTGTCAAGATCGTCGATAGCTTCCCTGGACAATCTATTGGTAAGGAGACTAATAATATTTAACTTGTGTTAAAGATGAATAATAATATCAATGATCATATCTGAGTGGATCTTAAACAGATTTCTTCGGTGCTCTGAGGGCGAGAGTATACGATGATGAAGTGAGGAAATGGATTGGAAGTACTGGAATTGAACAAATTGGAGAGAAACTTTTGAACTCAAGGGATGGACCA-CCAACATTTGAGCAACCAAAGATGACTATCGATAAGCTCCTCGAGTACGGCAACATGCTTGTTCAAGAGCAAGAGAATGTTAAGAGAGTTCAGTTAGCTGACAAGTACCTTAAAGAAGCTGCACTTGGTGATGCAAATGCTGATTCCATCAACAATGGATCCTTCTTTGCTAGCTAGACATTTTCGTCAATTTAATCAGTTCTGTTTTTTTGCATCATTTTTGTCATGATATTGTAATGATCTTCGTGTGATGATTGTATTAGTGAATATAAGTTTGATCTTATATCCGCGCGATTTCAGTTATG</genome_strand>
        <mrna_strand>ATGATGACATTGTCAAGATCGTCGATAGCTTCCCTGGACAATCTATTG................................................................................ATTTCTTCGGTGCTCTGAGGGCGAGAGTATNCGATGATGAAGTGAGGAAATGGATTGGAAGTACTGGAATTGAACAAATTGGAGAGAAACTTTTGAACTCAAGGGATGGACCACCCAACATTTGAGCAACCAAAGATGACTATCGATAAGCTCCTCGAGTACGGCAACATGCTTGTTCAAGAGCAAGAGAATGTTAAGAGAGTTCAGTTAGCTGACAAGTACCTTAAAGAAGCTGCACTTGGTGATGCAAATGCTGATTCCATCAACAATGGATCCTTCTTTGCTAGCTAGACATTTTCGTCAATTTAATCAGTTCTGTTTTTTTGCATCATTTTTGTCATGATATTGTAATGATCTTCGTGTGATGATTGTATTAGTGAATATAAGTTTGATCTTAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E227231" ref_strand="+" ref_description="SGN-E227231 [cLEL-30-B7](-)">
      <seq>tgatgacattgtcaagatcgtcgatagcttccctggacaatctattgatttcttcggtgctctgagggcgagagtatacgatgatgaagtgaggaaatggattggaagtactggaattgaacaaattggagagaaacttttgaactcaagggatggaccaccaacatttgagcaaccaaagatgactatcgataagctcctcgagtacggcaacatgcttgttcaagagcaagagaatgttaagagagttcagttagctgacaagtaccttaaagaagctgcacttggtgatgcaaatgctgattccatcaacaatggatccttctttgctagctagacattttcgtcaatttaatcagttctgtttttttgcatcatttttgtcatgatattgtaatgatcttcgtgtgatgattgtattagtgaatataagtttgctcttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="43734" stop="44858"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44034" g_stop="44080" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44081" i_stop="44160" i_length="80">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44161" g_stop="44555" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="442" r_length="395" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="443" polyA_stop="460"/>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E227231" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E227231" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44034" e_stop="44080"/>
          <exon e_start="44161" e_stop="44555"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGACATTGTCAAGATCGTCGATAGCTTCCCTGGACAATCTATTGGTAAGGAGACTAATAATATTTAACTTGTGTTAAAGATGAATAATAATATCAATGATCATATCTGAGTGGATCTTAAACAGATTTCTTCGGTGCTCTGAGGGCGAGAGTATACGATGATGAAGTGAGGAAATGGATTGGAAGTACTGGAATTGAACAAATTGGAGAGAAACTTTTGAACTCAAGGGATGGACCACCAACATTTGAGCAACCAAAGATGACTATCGATAAGCTCCTCGAGTACGGCAACATGCTTGTTCAAGAGCAAGAGAATGTTAAGAGAGTTCAGTTAGCTGACAAGTACCTTAAAGAAGCTGCACTTGGTGATGCAAATGCTGATTCCATCAACAATGGATCCTTCTTTGCTAGCTAGACATTTTCGTCAATTTAATCAGTTCTGTTTTTTTGCATCATTTTTGTCATGATATTGTAATGATCTTCGTGTGATGATTGTATTAGTGAATATAAGTTTGATCTT</genome_strand>
        <mrna_strand>TGATGACATTGTCAAGATCGTCGATAGCTTCCCTGGACAATCTATTG................................................................................ATTTCTTCGGTGCTCTGAGGGCGAGAGTATACGATGATGAAGTGAGGAAATGGATTGGAAGTACTGGAATTGAACAAATTGGAGAGAAACTTTTGAACTCAAGGGATGGACCACCAACATTTGAGCAACCAAAGATGACTATCGATAAGCTCCTCGAGTACGGCAACATGCTTGTTCAAGAGCAAGAGAATGTTAAGAGAGTTCAGTTAGCTGACAAGTACCTTAAAGAAGCTGCACTTGGTGATGCAAATGCTGATTCCATCAACAATGGATCCTTCTTTGCTAGCTAGACATTTTCGTCAATTTAATCAGTTCTGTTTTTTTGCATCATTTTTGTCATGATATTGTAATGATCTTCGTGTGATGATTGTATTAGTGAATATAAGTTTGCTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E227594" ref_strand="+" ref_description="SGN-E227594 [cLEL-30-B7](-)">
      <seq>tgacattgtcaagatcgtcgatagcttccctggacaatctattgatttcttcggtgctctgagggcgagagtatacgatgatgaagtgaggaaatggattggaagtactggaattgaacaaattggagagaaacttttgaactcaagggatggaccaccaacatttgagcaaccaaagatgactatcgataagctcctcgagtacggcaacatgcttgttcaagagcaagagaatgttaagagagttcagttagctgacaagtaccttaaagaagctgcacttggtgatgcaaatgctgattccatcaacaatggatccttctttgctagctagacattttcgtcaatttaatcagttctgtttttttgcatcatttttgtcatgatattgtaatgatcttcgtgtgatgattgtattagtgaatataagtttgatcttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="43737" stop="44858"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44037" g_stop="44080" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44081" i_stop="44160" i_length="80">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44161" g_stop="44555" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="439" r_length="395" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="440" polyA_stop="457"/>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E227594" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E227594" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44037" e_stop="44080"/>
          <exon e_start="44161" e_stop="44555"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACATTGTCAAGATCGTCGATAGCTTCCCTGGACAATCTATTGGTAAGGAGACTAATAATATTTAACTTGTGTTAAAGATGAATAATAATATCAATGATCATATCTGAGTGGATCTTAAACAGATTTCTTCGGTGCTCTGAGGGCGAGAGTATACGATGATGAAGTGAGGAAATGGATTGGAAGTACTGGAATTGAACAAATTGGAGAGAAACTTTTGAACTCAAGGGATGGACCACCAACATTTGAGCAACCAAAGATGACTATCGATAAGCTCCTCGAGTACGGCAACATGCTTGTTCAAGAGCAAGAGAATGTTAAGAGAGTTCAGTTAGCTGACAAGTACCTTAAAGAAGCTGCACTTGGTGATGCAAATGCTGATTCCATCAACAATGGATCCTTCTTTGCTAGCTAGACATTTTCGTCAATTTAATCAGTTCTGTTTTTTTGCATCATTTTTGTCATGATATTGTAATGATCTTCGTGTGATGATTGTATTAGTGAATATAAGTTTGATCTT</genome_strand>
        <mrna_strand>TGACATTGTCAAGATCGTCGATAGCTTCCCTGGACAATCTATTG................................................................................ATTTCTTCGGTGCTCTGAGGGCGAGAGTATACGATGATGAAGTGAGGAAATGGATTGGAAGTACTGGAATTGAACAAATTGGAGAGAAACTTTTGAACTCAAGGGATGGACCACCAACATTTGAGCAACCAAAGATGACTATCGATAAGCTCCTCGAGTACGGCAACATGCTTGTTCAAGAGCAAGAGAATGTTAAGAGAGTTCAGTTAGCTGACAAGTACCTTAAAGAAGCTGCACTTGGTGATGCAAATGCTGATTCCATCAACAATGGATCCTTCTTTGCTAGCTAGACATTTTCGTCAATTTAATCAGTTCTGTTTTTTTGCATCATTTTTGTCATGATATTGTAATGATCTTCGTGTGATGATTGTATTAGTGAATATAAGTTTGATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E230554" ref_strand="+" ref_description="SGN-E230554 [cLEL-35-K1](-)">
      <seq>attgtcaagatcgtcgatagcttccctggacaatctattgattttttcggtgctctgagggcgagagtatacgatgatgaagtgaggaaatggattggaagtactggaattgaacaaattggagagaaacttttgaactcaagggatggaccaccaacatttgagcaaccaaagatgactatcgataagctcctcgagtacggcaacatgcttgttcaagagcaagagaatgttaagagagttcagttagctgacaagtaccttaaagaagctgcacttggtgatgcaaatgctgattccatcaacaatggatccttctttgctagctagacattttcgtcaatttaatcagttctgtttttttgcatcatttttgtcatgatattgtaatgatcttcgtgtgatgattgtattagtgaatataagtttgatcttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="43741" stop="44858"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44041" g_stop="44080" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44081" i_stop="44160" i_length="80">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44161" g_stop="44555" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="435" r_length="395" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="436" polyA_stop="453"/>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E230554" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E230554" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44041" e_stop="44080"/>
          <exon e_start="44161" e_stop="44555"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGTCAAGATCGTCGATAGCTTCCCTGGACAATCTATTGGTAAGGAGACTAATAATATTTAACTTGTGTTAAAGATGAATAATAATATCAATGATCATATCTGAGTGGATCTTAAACAGATTTCTTCGGTGCTCTGAGGGCGAGAGTATACGATGATGAAGTGAGGAAATGGATTGGAAGTACTGGAATTGAACAAATTGGAGAGAAACTTTTGAACTCAAGGGATGGACCACCAACATTTGAGCAACCAAAGATGACTATCGATAAGCTCCTCGAGTACGGCAACATGCTTGTTCAAGAGCAAGAGAATGTTAAGAGAGTTCAGTTAGCTGACAAGTACCTTAAAGAAGCTGCACTTGGTGATGCAAATGCTGATTCCATCAACAATGGATCCTTCTTTGCTAGCTAGACATTTTCGTCAATTTAATCAGTTCTGTTTTTTTGCATCATTTTTGTCATGATATTGTAATGATCTTCGTGTGATGATTGTATTAGTGAATATAAGTTTGATCTT</genome_strand>
        <mrna_strand>ATTGTCAAGATCGTCGATAGCTTCCCTGGACAATCTATTG................................................................................ATTTTTTCGGTGCTCTGAGGGCGAGAGTATACGATGATGAAGTGAGGAAATGGATTGGAAGTACTGGAATTGAACAAATTGGAGAGAAACTTTTGAACTCAAGGGATGGACCACCAACATTTGAGCAACCAAAGATGACTATCGATAAGCTCCTCGAGTACGGCAACATGCTTGTTCAAGAGCAAGAGAATGTTAAGAGAGTTCAGTTAGCTGACAAGTACCTTAAAGAAGCTGCACTTGGTGATGCAAATGCTGATTCCATCAACAATGGATCCTTCTTTGCTAGCTAGACATTTTCGTCAATTTAATCAGTTCTGTTTTTTTGCATCATTTTTGTCATGATATTGTAATGATCTTCGTGTGATGATTGTATTAGTGAATATAAGTTTGATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E230083" ref_strand="+" ref_description="SGN-E230083 [cLEL-33-C6](-)">
      <seq>gtgaggaaatggattggaagtactggaattgaacaaattggagagaaacttttgaactcaagggatggaccacccaacatttgagcaaccaaagatgactatcgataagctcctcgagtacggcaacatgcttgttcaagagcaagagaatgttaagagagttcagttagctgacaagtaccttaaagaagctgcacttggtgatgcaaatgctgattccatcaacaatggatccttctttgctagctagacattttcgtcaatttaatcagttctgtttttttgcatcatttttgtcatgatattgtaatgatcttcgtgtgatgattgtattagtgaatataagtttgatcttaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="43902" stop="103899"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44202" g_stop="44578" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="378" r_length="378" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E230083" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>377</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E230083" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44202" e_stop="44578"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAGGAAATGGATTGGAAGTACTGGAATTGAACAAATTGGAGAGAAACTTTTGAACTCAAGGGATGGACCAC-CAACATTTGAGCAACCAAAGATGACTATCGATAAGCTCCTCGAGTACGGCAACATGCTTGTTCAAGAGCAAGAGAATGTTAAGAGAGTTCAGTTAGCTGACAAGTACCTTAAAGAAGCTGCACTTGGTGATGCAAATGCTGATTCCATCAACAATGGATCCTTCTTTGCTAGCTAGACATTTTCGTCAATTTAATCAGTTCTGTTTTTTTGCATCATTTTTGTCATGATATTGTAATGATCTTCGTGTGATGATTGTATTAGTGAATATAAGTTTGATCTTATATCCGCGCGATTTCAGTTATG</genome_strand>
        <mrna_strand>GTGAGGAAATGGATTGGAAGTACTGGAATTGAACAAATTGGAGAGAAACTTTTGAACTCAAGGGATGGACCACCCAACATTTGAGCAACCAAAGATGACTATCGATAAGCTCCTCGAGTACGGCAACATGCTTGTTCAAGAGCAAGAGAATGTTAAGAGAGTTCAGTTAGCTGACAAGTACCTTAAAGAAGCTGCACTTGGTGATGCAAATGCTGATTCCATCAACAATGGATCCTTCTTTGCTAGCTAGACATTTTCGTCAATTTAATCAGTTCTGTTTTTTTGCATCATTTTTGTCATGATATTGTAATGATCTTCGTGTGATGATTGTATTAGTGAATATAAGTTTGATCTTAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E220409" ref_strand="+" ref_description="SGN-E220409 [cLEL-12-P12](-)">
      <seq>aatggattggaagtactggaattgaacaaaattggagagaacacttttgaactcaagggatggaccacccaacatttgagcaaccaaagatgactatcgataagctcctcgagtacggcaacatgcttgttcaagagcaagagaatgttaagagagttcagttagctgacaagtaccttaaagaagctgcacttggtgatgcaaatgctgattccatcaacaatggatccttctttgctagctagacattttcgtcaatttaatcagttctgtttttttgcatcatttttgtcatgatattgtaatgatcttcgtgtgataattgcattagtgaatataagtttgatcttaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="43909" stop="103899"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44209" g_stop="44577" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="372" r_length="372" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E220409" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>369</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E220409" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44209" e_stop="44577"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGATTGGAAGTACTGGAATTGAAC-AAATTGGAGAGAA-ACTTTTGAACTCAAGGGATGGACCA-CCAACATTTGAGCAACCAAAGATGACTATCGATAAGCTCCTCGAGTACGGCAACATGCTTGTTCAAGAGCAAGAGAATGTTAAGAGAGTTCAGTTAGCTGACAAGTACCTTAAAGAAGCTGCACTTGGTGATGCAAATGCTGATTCCATCAACAATGGATCCTTCTTTGCTAGCTAGACATTTTCGTCAATTTAATCAGTTCTGTTTTTTTGCATCATTTTTGTCATGATATTGTAATGATCTTCGTGTGATGATTGTATTAGTGAATATAAGTTTGATCTTATATCCGCGCGATTTCAGTTAT</genome_strand>
        <mrna_strand>AATGGATTGGAAGTACTGGAATTGAACAAAATTGGAGAGAACACTTTTGAACTCAAGGGATGGACCACCCAACATTTGAGCAACCAAAGATGACTATCGATAAGCTCCTCGAGTACGGCAACATGCTTGTTCAAGAGCAAGAGAATGTTAAGAGAGTTCAGTTAGCTGACAAGTACCTTAAAGAAGCTGCACTTGGTGATGCAAATGCTGATTCCATCAACAATGGATCCTTCTTTGCTAGCTAGACATTTTCGTCAATTTAATCAGTTCTGTTTTTTTGCATCATTTTTGTCATGATATTGTAATGATCTTCGTGTGATAATTGCATTAGTGAATATAAGTTTGATCTTAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E230771" ref_strand="+" ref_description="SGN-E230771 [cLEL-35-K1](-)">
      <seq>aaacttttgaactcaagggatggaccaccaacatttgagcaaccaaagatgactatcgataagctcctcgagtacggcaacatgcttgttcaagagcaagagaatgttaagagagttcagttagctgacaagtaccttaaagaagctgcacttggtgatgcaaatgctgattccatcaccaatggatccttctttgctagctagacattttcgtcaatttaatcagttctgtttttttgcatcatttttgtcatgatattgtaatgatcttcgtgtgatgattgcccagtcaatataagttagacctccaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="43947" stop="44830"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44247" g_stop="44550" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="303" r_length="303" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="310" polyA_stop="325"/>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E230771" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>304</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E230771" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44247" e_stop="44550"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTTTGAACTCAAGGGATGGACCACCAACATTTGAGCAACCAAAGATGACTATCGATAAGCTCCTCGAGTACGGCAACATGCTTGTTCAAGAGCAAGAGAATGTTAAGAGAGTTCAGTTAGCTGACAAGTACCTTAAAGAAGCTGCACTTGGTGATGCAAATGCTGATTCCATCAACAATGGATCCTTCTTTGCTAGCTAGACATTTTCGTCAATTTAATCAGTTCTGTTTTTTTGCATCATTTTTGTCATGATATTGTAATGATCTTCGTGTGATGATTGTATTAGTGAATATAAGTTTG</genome_strand>
        <mrna_strand>AAACTTTTGAACTCAAGGGATGGACCACCAACATTTGAGCAACCAAAGATGACTATCGATAAGCTCCTCGAGTACGGCAACATGCTTGTTCAAGAGCAAGAGAATGTTAAGAGAGTTCAGTTAGCTGACAAGTACCTTAAAGAAGCTGCACTTGGTGATGCAAATGCTGATTCCATCACCAATGGATCCTTCTTTGCTAGCTAGACATTTTCGTCAATTTAATCAGTTCTGTTTTTTTGCATCATTTTTGTCATGATATTGTAATGATCTTCGTGTGATGATTG-CCCAGTCAATATAAGTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E541704" ref_strand="+" ref_description="SGN-E541704 [TUS-62-K3]">
      <seq>caccaatagtacatttttttccaactaaaaagtacaacaatcttgcttcaaaattctcaaatcttgtatacatttcagtccaaatctcactagataaaatcttgaaatctgacctgagaatcttgggggaaaaaaataccctttacaaatggtgttcttgtttgggtaacatttttctgagaccccaaaagtgcgcttttcattgtaaagcatcaatctttactactaattgctgaaatcttcagtacccttgaaaaaatcttgaaatttaatcttgaaaatatagctttacaagtggtgctcttcttgtttggcttggctgtgtttctgtaacatttctcgcaaaccccccccaaaagtgcttttttcattataaagcaacaatctttactacaaatcttgaaacttggcctgaaaatcttgaaaacccccttttggaaatggtttatagttgtcttgtactactctgttcattcatttccttttcaatcctagcttcatctcagcaacttgatggcttcatttatacaagattcaatgaaccaaacaataacattaccttaagtggagctgctgagattagccaaaatggattcattcaactaaccaatgaaacaagtagattaatggggcatgctttctattcttcaccttttcagttcaagaactcaactaatggcagtgctttttcattttcaacatgttttgctcttgctatagtccctgaatatccaaaacttggtggtcatggacttgcttttactatttctcagtctaatgatttcagcacagctcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="52385" stop="53782"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52685" g_stop="53482" g_length="798"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="798" r_length="798" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E541704" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>798</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E541704" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52685" e_stop="53482"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCAATAGTACATTTTTTTCCAACTAAAAAGTACAACAATCTTGCTTCAAAATTCTCAAATCTTGTATACATTTCAGTCCAAATCTCACTAGATAAAATCTTGAAATCTGACCTGAGAATCTTGGGGGAAAAAAATACCCTTTACAAATGGTGTTCTTGTTTGGGTAACATTTTTCTGAGACCCCAAAAGTGCGCTTTTCATTGTAAAGCATCAATCTTTACTACTAATTGCTGAAATCTTCAGTACCCTTGAAAAAATCTTGAAATTTAATCTTGAAAATATAGCTTTACAAGTGGTGCTCTTCTTGTTTGGCTTGGCTGTGTTTCTGTAACATTTCTCGCAAACCCCCCCCAAAAGTGCTTTTTTCATTATAAAGCAACAATCTTTACTACAAATCTTGAAACTTGGCCTGAAAATCTTGAAAACCCCCTTTTGGAAATGGTTTATAGTTGTCTTGTACTACTCTGTTCATTCATTTCCTTTTCAATCCTAGCTTCATCTCAGCAACTTGATGGCTTCATTTATACAAGATTCAATGAACCAAACAATAACATTACCTTAAGTGGAGCTGCTGAGATTAGCCAAAATGGATTCATTCAACTAACCAATGAAACAAGTAGATTAATGGGGCATGCTTTCTATTCTTCACCTTTTCAGTTCAAGAACTCAACTAATGGCAGTGCTTTTTCATTTTCAACATGTTTTGCTCTTGCTATAGTCCCTGAATATCCAAAACTTGGTGGTCATGGACTTGCTTTTACTATTTCTCAGTCTAATGATTTCAGCACAGCTCTTC</genome_strand>
        <mrna_strand>CACCAATAGTACATTTTTTTCCAACTAAAAAGTACAACAATCTTGCTTCAAAATTCTCAAATCTTGTATACATTTCAGTCCAAATCTCACTAGATAAAATCTTGAAATCTGACCTGAGAATCTTGGGGGAAAAAAATACCCTTTACAAATGGTGTTCTTGTTTGGGTAACATTTTTCTGAGACCCCAAAAGTGCGCTTTTCATTGTAAAGCATCAATCTTTACTACTAATTGCTGAAATCTTCAGTACCCTTGAAAAAATCTTGAAATTTAATCTTGAAAATATAGCTTTACAAGTGGTGCTCTTCTTGTTTGGCTTGGCTGTGTTTCTGTAACATTTCTCGCAAACCCCCCCCAAAAGTGCTTTTTTCATTATAAAGCAACAATCTTTACTACAAATCTTGAAACTTGGCCTGAAAATCTTGAAAACCCCCTTTTGGAAATGGTTTATAGTTGTCTTGTACTACTCTGTTCATTCATTTCCTTTTCAATCCTAGCTTCATCTCAGCAACTTGATGGCTTCATTTATACAAGATTCAATGAACCAAACAATAACATTACCTTAAGTGGAGCTGCTGAGATTAGCCAAAATGGATTCATTCAACTAACCAATGAAACAAGTAGATTAATGGGGCATGCTTTCTATTCTTCACCTTTTCAGTTCAAGAACTCAACTAATGGCAGTGCTTTTTCATTTTCAACATGTTTTGCTCTTGCTATAGTCCCTGAATATCCAAAACTTGGTGGTCATGGACTTGCTTTTACTATTTCTCAGTCTAATGATTTCAGCACAGCTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E299840" ref_strand="+" ref_description="SGN-E299840 [cLEW-1-A6]">
      <seq>accaatagtacatttttttccaactaaaaagtacaacaatcttgcttcaaaattctcaaatcttgtatacatttcagtccaaatctcactagataaaatcttgaaatctgacctgagaatcttgggggaaaaaaataccctttacaaatggtgttcttgtttgggtaacatttttctgagaccccaaaagtgcgcttttcattgtaaagcatcaatctttactactaattgctgaaatcttcagtacccttgaaaaaatcttgaaatttaatcttgaaaatatagctttacaagtggtgctcttcttgtttggcttggctgtgtttctgtaacatttctcgcaaaccccccccaaaagtgcttttttcattataaagcaacaatctttactacaaatcttgaaacttggcctgaaaatcttgaaaacccccttttggaaatggtttatagttgtcttgtactactctgttcattcatttccttttcaatcctagcttcatctcagcaacttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="52386" stop="53500"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52686" g_stop="53200" g_length="515"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="515" r_length="515" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E299840" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299840" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52686" e_stop="53200"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAATAGTACATTTTTTTCCAACTAAAAAGTACAACAATCTTGCTTCAAAATTCTCAAATCTTGTATACATTTCAGTCCAAATCTCACTAGATAAAATCTTGAAATCTGACCTGAGAATCTTGGGGGAAAAAAATACCCTTTACAAATGGTGTTCTTGTTTGGGTAACATTTTTCTGAGACCCCAAAAGTGCGCTTTTCATTGTAAAGCATCAATCTTTACTACTAATTGCTGAAATCTTCAGTACCCTTGAAAAAATCTTGAAATTTAATCTTGAAAATATAGCTTTACAAGTGGTGCTCTTCTTGTTTGGCTTGGCTGTGTTTCTGTAACATTTCTCGCAAACCCCCCCCAAAAGTGCTTTTTTCATTATAAAGCAACAATCTTTACTACAAATCTTGAAACTTGGCCTGAAAATCTTGAAAACCCCCTTTTGGAAATGGTTTATAGTTGTCTTGTACTACTCTGTTCATTCATTTCCTTTTCAATCCTAGCTTCATCTCAGCAACTTGATG</genome_strand>
        <mrna_strand>ACCAATAGTACATTTTTTTCCAACTAAAAAGTACAACAATCTTGCTTCAAAATTCTCAAATCTTGTATACATTTCAGTCCAAATCTCACTAGATAAAATCTTGAAATCTGACCTGAGAATCTTGGGGGAAAAAAATACCCTTTACAAATGGTGTTCTTGTTTGGGTAACATTTTTCTGAGACCCCAAAAGTGCGCTTTTCATTGTAAAGCATCAATCTTTACTACTAATTGCTGAAATCTTCAGTACCCTTGAAAAAATCTTGAAATTTAATCTTGAAAATATAGCTTTACAAGTGGTGCTCTTCTTGTTTGGCTTGGCTGTGTTTCTGTAACATTTCTCGCAAACCCCCCCCAAAAGTGCTTTTTTCATTATAAAGCAACAATCTTTACTACAAATCTTGAAACTTGGCCTGAAAATCTTGAAAACCCCCTTTTGGAAATGGTTTATAGTTGTCTTGTACTACTCTGTTCATTCATTTCCTTTTCAATCCTAGCTTCATCTCAGCAACTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E541701" ref_strand="+" ref_description="SGN-E541701 [TUS-62-K3](-)">
      <seq>tggtgcgttgttgcttgaagtggtatgtggacgtagaccgattgattcaaaggtggggccagaggaattagttctagtagacatggtgtggaacaaatggagagaggggaaaattcttgatgttatagacaagagattgaaaggtgagttcaatgaaagtgaagttgtgatggtgttgaaattaggactaatgtgttcaaacaatgaggcgtcgtctcgacctagcatgagacaagtgatgagttacttggaaggtgaagctgatatacctgatgctccaatggctcctggtgattataatggaggatttggattcgaagaaaacgaatgtatgcattctttagcatcttcaagaggacatacatcatgtttggctaatggaaatgttgatggtacatttgtttctgtttctactgcaccactttcatgtttatttactgatgagttgcctaggtagtgattgtgaagttgtgtgcagatttttttgagttttcaggaacattttcttgatgaacactactttaaagttcaagttatgaaagtttaaaccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="54414" stop="103899"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54714" g_stop="55281" g_length="568"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="568" r_length="568" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E541701" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E541701" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54714" e_stop="55281"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGCGTTGTTGCTTGAAGTGGTATGTGGACGTAGACCGATTGATTCAAAGGTGGGGCCAGAGGAATTAGTTCTAGTAGACATGGTGTGGAACAAATGGAGAGAGGGGAAAATTCTTGATGTTATAGACAAGAGATTGAAAGGTGAGTTCAATGAAAGTGAAGTTGTGATGGTGTTGAAATTAGGACTAATGTGTTCAAACAATGAGGCGTCGTCTCGACCTAGCATGAGACAAGTGATGAGTTACTTGGAAGGTGAAGCTGATATACCTGATGCTCCAATGGCTCCTGGTGATTATAATGGAGGATTTGGATTCGAAGAAAACGAATGTATGCATTCTTTAGCATCTTCAAGAGGACATACATCATGTTTGGCTAATGGAAATGTTGATGGTACATTTGTTTCTGTTTCTACTGCACCACTTTCATGTTTATTTACTGATGAGTTGCCTAGGTAGTGATTGTGAAGTTGTGTGCAGATTTTTTTGAGTTTTCAGGAACATTTTCTTGATGAACACTACTTTAAAGTTCAAGTTATGAAAGTTTAAACCAATCTTTTTGGTCAAGAA</genome_strand>
        <mrna_strand>TGGTGCGTTGTTGCTTGAAGTGGTATGTGGACGTAGACCGATTGATTCAAAGGTGGGGCCAGAGGAATTAGTTCTAGTAGACATGGTGTGGAACAAATGGAGAGAGGGGAAAATTCTTGATGTTATAGACAAGAGATTGAAAGGTGAGTTCAATGAAAGTGAAGTTGTGATGGTGTTGAAATTAGGACTAATGTGTTCAAACAATGAGGCGTCGTCTCGACCTAGCATGAGACAAGTGATGAGTTACTTGGAAGGTGAAGCTGATATACCTGATGCTCCAATGGCTCCTGGTGATTATAATGGAGGATTTGGATTCGAAGAAAACGAATGTATGCATTCTTTAGCATCTTCAAGAGGACATACATCATGTTTGGCTAATGGAAATGTTGATGGTACATTTGTTTCTGTTTCTACTGCACCACTTTCATGTTTATTTACTGATGAGTTGCCTAGGTAGTGATTGTGAAGTTGTGTGCAGATTTTTTTGAGTTTTCAGGAACATTTTCTTGATGAACACTACTTTAAAGTTCAAGTTATGAAAGTTTAAACCAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E372634" ref_strand="+" ref_description="SGN-E372634 [TUS-31-A15](-)">
      <seq>acaagcccttgtgataaaaacaaaacatgtcaaggacctaatggtacaaaattctcagcttcaatcaacaatgtgtcatttgtgttacctacaactgctcttcttcaatctcatttctttggtcaatctaaaggtgtatacaaacctgattttccttatagtcctttaaattggtttaattacactgggaaccctccaaataacactcttgttgcaaatgacacaaaacttatggttttaccattcaacacaagtgtggagttagtaatgcaagatacaagcattcttggtcttgaaagtcatcctcttcatcttcatggatttaatttctttgttgttggacaaggatttggaaattttgaccctaaaaaggatccatcaaatttcaacctagttgatcctattgaaaggaatactgtaggtgttccttttggtggttgggttgctattcgatttctcgcggataatccaggagtgtggtttatgcattgtcacttggaagttcatacaagttggggattgaaaatggcatggttggttcaagatggaaaacttccaaatcaaaagttgcctcctccaccaatggatcttcccaaatgttgacaattttattttgtgcaatttttgtacctcccaattttattttttaaatttgattatgtgtgtgtgagagagagtcaaggattttttgtaaattcataactcttattaattcgaataatgagaactaatatacttatcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="-" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="67332" stop="65893"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67032" g_stop="66561" g_length="472"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="472" r_length="472" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66560" i_stop="66463" i_length="98">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66462" g_stop="66205" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="730" r_length="258" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="-" ref_id="SGN-E372634" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372634" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67032" e_stop="66561"/>
          <exon e_start="66462" e_stop="66205"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGCCCTTGTGATAAAAACAAAACATGTCAAGGACCTAATGGTACAAAATTCTCAGCTTCAATCAACAATGTGTCATTTGTGTTACCTACAACTGCTCTTCTTCAATCTCATTTCTTTGGTCAATCTAAAGGTGTATACAAACCTGATTTTCCTTATAGTCCTTTAAATTGGTTTAATTACACTGGGAACCCTCCAAATAACACTCTTGTTGCAAATGACACAAAACTTATGGTTTTACCATTCAACACAAGTGTGGAGTTAGTAATGCAAGATACAAGCATTCTTGGTCTTGAAAGTCATCCTCTTCATCTTCATGGATTTAATTTCTTTGTTGTTGGACAAGGATTTGGAAATTTTGACCCTAAAAAGGATCCATCAAATTTCAACCTAGTTGATCCTATTGAAAGGAATACTGTAGGTGTTCCTTCTGGTGGTTGGGTTGCTATTCGATTTCTCGCGGATAATCCAGGTAATTTTTTTTATATGAATATGCATTCAAAAAAGTATTATATATATATATATCAGGTTAAAATTTCTGACTCCACGAATAATGATGTTTGTTAATAGGAGTGTGGTTTATGCATTGTCACTTGGAAGTTCATACAAGTTGGGGATTGAAAATGGCATGGTTGGTTCAAGATGGAAAACTTCCAAATCAAAAGTTGCCTCCTCCACCAATGGATCTTCCCAAATGTTGACAATTTTATTTTGTGCAATTTTTGTACCTCCCAATTTTATTTTTTAAATTTGATTATGTGTGTGTGAGAGAGAGTCAAGGATTTTTTGTAAATTCATAACTCTTATTAATTCGAATAATGAGAACTA</genome_strand>
        <mrna_strand>ACAAGCCCTTGTGATAAAAACAAAACATGTCAAGGACCTAATGGTACAAAATTCTCAGCTTCAATCAACAATGTGTCATTTGTGTTACCTACAACTGCTCTTCTTCAATCTCATTTCTTTGGTCAATCTAAAGGTGTATACAAACCTGATTTTCCTTATAGTCCTTTAAATTGGTTTAATTACACTGGGAACCCTCCAAATAACACTCTTGTTGCAAATGACACAAAACTTATGGTTTTACCATTCAACACAAGTGTGGAGTTAGTAATGCAAGATACAAGCATTCTTGGTCTTGAAAGTCATCCTCTTCATCTTCATGGATTTAATTTCTTTGTTGTTGGACAAGGATTTGGAAATTTTGACCCTAAAAAGGATCCATCAAATTTCAACCTAGTTGATCCTATTGAAAGGAATACTGTAGGTGTTCCTTTTGGTGGTTGGGTTGCTATTCGATTTCTCGCGGATAATCCAG..................................................................................................GAGTGTGGTTTATGCATTGTCACTTGGAAGTTCATACAAGTTGGGGATTGAAAATGGCATGGTTGGTTCAAGATGGAAAACTTCCAAATCAAAAGTTGCCTCCTCCACCAATGGATCTTCCCAAATGTTGACAATTTTATTTTGTGCAATTTTTGTACCTCCCAATTTTATTTTTTAAATTTGATTATGTGTGTGTGAGAGAGAGTCAAGGATTTTTTGTAAATTCATAACTCTTATTAATTCGAATAATGAGAACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E372635" ref_strand="+" ref_description="SGN-E372635 [TUS-31-A15]">
      <seq>cttcttcgattgatcaacgctgcacttaatgacgagcttttcttcagtattgcaaatcatactctccaaattatcgatgctgacggagtttacgttaaaccatttgagacaaatacacttattattacaccaggacaaacacataacgttcttctcaaaactaaatctcatttccctaatgcaacattttacatgactgctcgaccttatgtgacaggtcctggtacattcgataactctacagttgctggaatattagagtacgaatccgaaacaaaactctatttgaaaaatctaccgctctttaaaccgttactaccagctctgaatgacacaaattttgtcaccaattttactaatagattaagaagtctggcgagtcctcaataccctgctaatgtacctcaaaacgtcgatagacgtttgtttttcacagtaggtcttggaacaagcccttgtgataaaaacaaaacatgtcaaggacctaatggtacaaaattctcagcttcaatcaacaatgtgtcatttgtgttacctacaactgctcttcttcaatctcatttctttggtcaatctaaaggtgtatacaaacctgattttccttatagtcctttaaattggtttaattacactgggaaccctccaaataacactcttgttgcaaatgacacaaaacttatggttttaccattcaacacaagtgtggagttagtaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="-" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="67779" stop="66463"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67479" g_stop="66763" g_length="717"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="717" r_length="717" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="-" ref_id="SGN-E372635" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372635" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67479" e_stop="66763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTCGATTGATCAACGCTGCACTTAATGACGAGCTTTTCTTCAGTATTGCAAATCATACTCTCCAAATTATCGATGCTGACGGAGTTTACGTTAAACCATTTGAGACAAATACACTTATTATTACACCAGGACAAACACATAACGTTCTTCTCAAAACTAAATCTCATTTCCCTAATGCAACATTTTACATGACTGCTCGACCTTATGTGACAGGTCCTGGTACATTCGATAACTCTACAGTTGCTGGAATATTAGAGTACGAATCCGAAACAAAACTCTATTTGAAAAATCTACCGCTCTTTAAACCGTTACTACCAGCTCTGAATGACACAAATTTTGTCACCAATTTTACTAATAGATTAAGAAGTCTGGCGAGTCCTCAATACCCTGCTAATGTACCTCAAAACGTCGATAGACGTTTGTTTTTCACAGTAGGTCTTGGAACAAGCCCTTGTGATAAAAACAAAACATGTCAAGGACCTAATGGTACAAAATTCTCAGCTTCAATCAACAATGTGTCATTTGTGTTACCTACAACTGCTCTTCTTCAATCTCATTTCTTTGGTCAATCTAAAGGTGTATACAAACCTGATTTTCCTTATAGTCCTTTAAATTGGTTTAATTACACTGGGAACCCTCCAAATAACACTCTTGTTGCAAATGACACAAAACTTATGGTTTTACCATTCAACACAAGTGTGGAGTTAGTAATG</genome_strand>
        <mrna_strand>CTTCTTCGATTGATCAACGCTGCACTTAATGACGAGCTTTTCTTCAGTATTGCAAATCATACTCTCCAAATTATCGATGCTGACGGAGTTTACGTTAAACCATTTGAGACAAATACACTTATTATTACACCAGGACAAACACATAACGTTCTTCTCAAAACTAAATCTCATTTCCCTAATGCAACATTTTACATGACTGCTCGACCTTATGTGACAGGTCCTGGTACATTCGATAACTCTACAGTTGCTGGAATATTAGAGTACGAATCCGAAACAAAACTCTATTTGAAAAATCTACCGCTCTTTAAACCGTTACTACCAGCTCTGAATGACACAAATTTTGTCACCAATTTTACTAATAGATTAAGAAGTCTGGCGAGTCCTCAATACCCTGCTAATGTACCTCAAAACGTCGATAGACGTTTGTTTTTCACAGTAGGTCTTGGAACAAGCCCTTGTGATAAAAACAAAACATGTCAAGGACCTAATGGTACAAAATTCTCAGCTTCAATCAACAATGTGTCATTTGTGTTACCTACAACTGCTCTTCTTCAATCTCATTTCTTTGGTCAATCTAAAGGTGTATACAAACCTGATTTTCCTTATAGTCCTTTAAATTGGTTTAATTACACTGGGAACCCTCCAAATAACACTCTTGTTGCAAATGACACAAAACTTATGGTTTTACCATTCAACACAAGTGTGGAGTTAGTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E289334" ref_strand="+" ref_description="SGN-E289334 [cLES-18-F22]">
      <seq>cttcttcgattgatcaacgctgcacttaatgacgagcttttcttcagtattgcaaatcatactctccaaattatcgatgctgacggagtttacgttaaaccatttgagacaaatacacttattattacaccaggacaaacacataacgttcttctcaaaactaaatctcatttccctaatgcaacattttacatgactgctcgaccttatgtgacaggtcctggtacattcgataactctacagttgctggaatattagagtacgaatccgaaacaaaactctatttgaaaaatctaccgctctttaaaccgttactaccagctctgaatgacacaaattttgtcaccaattttactaatagattaagaagtctggcgagtcctcaataccctgctaatgtacctcaaaacgtcgatagacgtttgtttttcacagtaggtcttggaacaagcccttgtgataaaaacaaaacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="-" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="67779" stop="66704"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67479" g_stop="67004" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="476" r_length="476" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="-" ref_id="SGN-E289334" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289334" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67479" e_stop="67004"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTCGATTGATCAACGCTGCACTTAATGACGAGCTTTTCTTCAGTATTGCAAATCATACTCTCCAAATTATCGATGCTGACGGAGTTTACGTTAAACCATTTGAGACAAATACACTTATTATTACACCAGGACAAACACATAACGTTCTTCTCAAAACTAAATCTCATTTCCCTAATGCAACATTTTACATGACTGCTCGACCTTATGTGACAGGTCCTGGTACATTCGATAACTCTACAGTTGCTGGAATATTAGAGTACGAATCCGAAACAAAACTCTATTTGAAAAATCTACCGCTCTTTAAACCGTTACTACCAGCTCTGAATGACACAAATTTTGTCACCAATTTTACTAATAGATTAAGAAGTCTGGCGAGTCCTCAATACCCTGCTAATGTACCTCAAAACGTCGATAGACGTTTGTTTTTCACAGTAGGTCTTGGAACAAGCCCTTGTGATAAAAACAAAACATG</genome_strand>
        <mrna_strand>CTTCTTCGATTGATCAACGCTGCACTTAATGACGAGCTTTTCTTCAGTATTGCAAATCATACTCTCCAAATTATCGATGCTGACGGAGTTTACGTTAAACCATTTGAGACAAATACACTTATTATTACACCAGGACAAACACATAACGTTCTTCTCAAAACTAAATCTCATTTCCCTAATGCAACATTTTACATGACTGCTCGACCTTATGTGACAGGTCCTGGTACATTCGATAACTCTACAGTTGCTGGAATATTAGAGTACGAATCCGAAACAAAACTCTATTTGAAAAATCTACCGCTCTTTAAACCGTTACTACCAGCTCTGAATGACACAAATTTTGTCACCAATTTTACTAATAGATTAAGAAGTCTGGCGAGTCCTCAATACCCTGCTAATGTACCTCAAAACGTCGATAGACGTTTGTTTTTCACAGTAGGTCTTGGAACAAGCCCTTGTGATAAAAACAAAACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E273825" ref_strand="+" ref_description="SGN-E273825 [cLEN-7-P6]">
      <seq>aaagacaaccgggttaatgggtatgaaccgtggatctctatcttttgtttcacaaatggggttcaaaaagttttcttattgcatttcgagccttgatttttctggtattttacttttcggtgaatcgaattttacttggattttaccgttaaattacaccccgttagtcgaaatttcgcttccgttaccttatttcgatcgagttgcgtatactattaaacttgaaggtattaaagtttcgaataaattacttccgatacctgaatccgtatttataccctatcatactggggcgggtcaaaccatggttgattcgggtacccaatttacattcctattaggtcaagcttacactatactaaggagtgagtttttgaatcaaacaatgacaatccttaaagtccttgaagatcaagattttgtttttcaaggtgcaatggacttgtgttatcgagtacctattaatcaaacgtcgttacctaagttaccatcggttagtttagtgtttcgaggagcagaaataactgtttcaagagaacgattgttgtatcgagtacctggtgaaattcgagggaaagattcgatacattgttttacttttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="-" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="72785" stop="71582"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72485" g_stop="71882" g_length="604"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="604" r_length="604" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="-" ref_id="SGN-E273825" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273825" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72485" e_stop="71882"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGACAACCGGGTTAATGGGTATGAACCGTGGATCTCTATCTTTTGTTTCACAAATGGGGTTCAAAAAGTTTTCTTATTGCATTTCGAGCCTTGATTTTTCTGGTATTTTACTTTTCGGTGAATCGAATTTTACTTGGATTTTACCGTTAAATTACACCCCGTTAGTCGAAATTTCGCTTCCGTTACCTTATTTCGATCGAGTTGCGTATACTATTAAACTTGAAGGTATTAAAGTTTCGAATAAATTACTTCCGATACCTGAATCCGTATTTATACCCTATCATACTGGGGCGGGTCAAACCATGGTTGATTCGGGTACCCAATTTACATTCCTATTAGGTCAAGCTTACACTATACTAAGGAGTGAGTTTTTGAATCAAACAATGACAATCCTTAAGGTCCTTGAGGATCAAGATTTTGTTTTTCAAGGTGCAATGGACTTGTGTTATCGAGTACCTATTAATCAAACGTCGTTACCTAAGTTACCATCGGTTAGTTTAGTGTTTCGAGGAGCAGAAATAACTGTTTCAGGAGAACGATTGTTGTATCGAGTACCTGGTGAAATTCGAGGGAAAGATTCGATACATTGTTTTACTTTTGGA</genome_strand>
        <mrna_strand>AAAGACAACCGGGTTAATGGGTATGAACCGTGGATCTCTATCTTTTGTTTCACAAATGGGGTTCAAAAAGTTTTCTTATTGCATTTCGAGCCTTGATTTTTCTGGTATTTTACTTTTCGGTGAATCGAATTTTACTTGGATTTTACCGTTAAATTACACCCCGTTAGTCGAAATTTCGCTTCCGTTACCTTATTTCGATCGAGTTGCGTATACTATTAAACTTGAAGGTATTAAAGTTTCGAATAAATTACTTCCGATACCTGAATCCGTATTTATACCCTATCATACTGGGGCGGGTCAAACCATGGTTGATTCGGGTACCCAATTTACATTCCTATTAGGTCAAGCTTACACTATACTAAGGAGTGAGTTTTTGAATCAAACAATGACAATCCTTAAAGTCCTTGAAGATCAAGATTTTGTTTTTCAAGGTGCAATGGACTTGTGTTATCGAGTACCTATTAATCAAACGTCGTTACCTAAGTTACCATCGGTTAGTTTAGTGTTTCGAGGAGCAGAAATAACTGTTTCAAGAGAACGATTGTTGTATCGAGTACCTGGTGAAATTCGAGGGAAAGATTCGATACATTGTTTTACTTTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E706820" ref_strand="+" ref_description="SGN-E706820 [FA31AB03]">
      <seq>ccattactcaaatttcttcaccattgttgattttacccctaaaaactcaacaaatctcatctgggttttcatctccaaataaactcccatttactcacaatgttactcttactgtttccctttcagttggtacacctccacagaatgtaacaatggtgctcgatactggtagtgaactttcatggctacattcaaattcaacccgaatcaaacaacccattttcaaccccaaccgttcactctcctacagacccgtttcttgctccgaacccatttgcacgacccgaacccaagatttttccataccagcttcttgtgattcgaagaatttctgtcatgctgtgctttcttacgcagatgcttcgtcttcagaagggaatttagctatggatacgtttacgattggcgggtcgaattttacgggtacgatattcgggtcaatggattcgggtttcagtagtgattcggatgaagatgaaaagacaaccgggttaatgggtatgaaccgtggatctctatcttttgtttcacaaatggggttcaaaaagttttcttattgcatttcgagccttgatttttctggtattttacttttcggtgaatcgaattttacttggattttaccgttaaattacaccccgttagtcgaaatttcgcttccgttaccttatttcgatcgagttgcgtatactattaaacttgaaggtattaaagtttcgaataaattacttcccgatacctgaatccgtatttataccctatcatactggggcgggtcaaaccatgggttgatttcggtacccaatttacattcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="-" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="73263" stop="71850"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72963" g_stop="72150" g_length="814"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="816" r_length="816" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="-" ref_id="SGN-E706820" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>814</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706820" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72963" e_stop="72150"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTACTCAAATTTCTTCACCATTGTTGATTTTACCCCTAAAAACTCAACAAATCTCATCTGGGTTTTCATCTCCAAATAAACTCCCATTTACTCACAATGTTACTCTTACTGTTTCCCTTTCAGTTGGTACACCTCCACAGAATGTAACAATGGTGCTCGATACTGGTAGTGAACTTTCATGGCTACATTCAAATTCAACCCGAATCAAACAACCCATTTTCAACCCCAACCGTTCACTCTCCTACAGACCCGTTTCTTGCTCCGAACCCATTTGCACGACCCGAACCCAAGATTTTTCCATACCAGCTTCTTGTGATTCGAAGAATTTCTGTCATGCTGTGCTTTCTTACGCAGATGCTTCGTCTTCAGAAGGGAATTTAGCTATGGATACGTTTACGATTGGCGGGTCGAATTTTACGGGTACGATATTCGGGTCAATGGATTCGGGTTTCAGTAGTGATTCGGATGAAGATGAAAAGACAACCGGGTTAATGGGTATGAACCGTGGATCTCTATCTTTTGTTTCACAAATGGGGTTCAAAAAGTTTTCTTATTGCATTTCGAGCCTTGATTTTTCTGGTATTTTACTTTTCGGTGAATCGAATTTTACTTGGATTTTACCGTTAAATTACACCCCGTTAGTCGAAATTTCGCTTCCGTTACCTTATTTCGATCGAGTTGCGTATACTATTAAACTTGAAGGTATTAAAGTTTCGAATAAATTACTT-CCGATACCTGAATCCGTATTTATACCCTATCATACTGGGGCGGGTCAAACCAT-GGTTGATTCGGGTACCCAATTTACATTCCT</genome_strand>
        <mrna_strand>CCATTACTCAAATTTCTTCACCATTGTTGATTTTACCCCTAAAAACTCAACAAATCTCATCTGGGTTTTCATCTCCAAATAAACTCCCATTTACTCACAATGTTACTCTTACTGTTTCCCTTTCAGTTGGTACACCTCCACAGAATGTAACAATGGTGCTCGATACTGGTAGTGAACTTTCATGGCTACATTCAAATTCAACCCGAATCAAACAACCCATTTTCAACCCCAACCGTTCACTCTCCTACAGACCCGTTTCTTGCTCCGAACCCATTTGCACGACCCGAACCCAAGATTTTTCCATACCAGCTTCTTGTGATTCGAAGAATTTCTGTCATGCTGTGCTTTCTTACGCAGATGCTTCGTCTTCAGAAGGGAATTTAGCTATGGATACGTTTACGATTGGCGGGTCGAATTTTACGGGTACGATATTCGGGTCAATGGATTCGGGTTTCAGTAGTGATTCGGATGAAGATGAAAAGACAACCGGGTTAATGGGTATGAACCGTGGATCTCTATCTTTTGTTTCACAAATGGGGTTCAAAAAGTTTTCTTATTGCATTTCGAGCCTTGATTTTTCTGGTATTTTACTTTTCGGTGAATCGAATTTTACTTGGATTTTACCGTTAAATTACACCCCGTTAGTCGAAATTTCGCTTCCGTTACCTTATTTCGATCGAGTTGCGTATACTATTAAACTTGAAGGTATTAAAGTTTCGAATAAATTACTTCCCGATACCTGAATCCGTATTTATACCCTATCATACTGGGGCGGGTCAAACCATGGGTTGATTTCGGTACCCAATTTACATTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E577642" ref_strand="+" ref_description="SGN-E577642 [LE15BB12]">
      <seq>tttcaattcacaatggaattacttctcttcttcttcctcacaccatttctcttctttattaactgttcttccattactcaaatttcttcaccattgttgattttacccctaaaaactcaacaaatctcatctgggttttcatctccaaataaactcccatttactcacaatgttactcttactgtttccctttcagttggtacacctccacagaatgtaacaatggtgctcgatactggtagtgaactttcatggctacattcaaattcaacccgaatcaaacaacccattttcaaccccaaccgttcactctcctacagacccgtttcttgctccgaacccatttgcacgacccgaacccaagatttttccataccagcttcttgtgattcgaagaatttctgtcatgctgtgctttcttacgcagatgcttcgtcttcagaagggaatttagctatggatacgtttacgattggcgggtcgaattttacgggtacgatattcgggtcaatggattcgggtttcagtagtgattcggatgaagatgaaaagacaaccgggttaatgggtatgaaccgtggatctctatcttttgtttcacaaatggggttcaaaaagttttcttattgcatttcgagccttgatttttctggtattttacttttcggtgaatcgaattttacttggattttaccgttaaattacaccccgttagtcgaaatttcgctccgttaccttatttcgatcgagttgcgtatacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="-" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="73333" stop="71971"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73033" g_stop="72271" g_length="763"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="762" r_length="762" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="-" ref_id="SGN-E577642" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>763</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E577642" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73033" e_stop="72271"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAATTCACAATGGAATTACTTCTCTTCTTCTTCCTCACACCATTTCTCTTCTTTATTAACTGTTCTTCCATTACTCAAATTTCTTCACCATTGTTGATTTTACCCCTAAAAACTCAACAAATCTCATCTGGGTTTTCATCTCCAAATAAACTCCCATTTACTCACAATGTTACTCTTACTGTTTCCCTTTCAGTTGGTACACCTCCACAGAATGTAACAATGGTGCTCGATACTGGTAGTGAACTTTCATGGCTACATTCAAATTCAACCCGAATCAAACAACCCATTTTCAACCCCAACCGTTCACTCTCCTACAGACCCGTTTCTTGCTCCGAACCCATTTGCACGACCCGAACCCAAGATTTTTCCATACCAGCTTCTTGTGATTCGAAGAATTTCTGTCATGCTGTGCTTTCTTACGCAGATGCTTCGTCTTCAGAAGGGAATTTAGCTATGGATACGTTTACGATTGGCGGGTCGAATTTTACGGGTACGATATTCGGGTCAATGGATTCGGGTTTCAGTAGTGATTCGGATGAAGATGAAAAGACAACCGGGTTAATGGGTATGAACCGTGGATCTCTATCTTTTGTTTCACAAATGGGGTTCAAAAAGTTTTCTTATTGCATTTCGAGCCTTGATTTTTCTGGTATTTTACTTTTCGGTGAATCGAATTTTACTTGGATTTTACCGTTAAATTACACCCCGTTAGTCGAAATTTCGCTTCCGTTACCTTATTTCGATCGAGTTGCGTATACTA</genome_strand>
        <mrna_strand>TTTCAATTCACAATGGAATTACTTCTCTTCTTCTTCCTCACACCATTTCTCTTCTTTATTAACTGTTCTTCCATTACTCAAATTTCTTCACCATTGTTGATTTTACCCCTAAAAACTCAACAAATCTCATCTGGGTTTTCATCTCCAAATAAACTCCCATTTACTCACAATGTTACTCTTACTGTTTCCCTTTCAGTTGGTACACCTCCACAGAATGTAACAATGGTGCTCGATACTGGTAGTGAACTTTCATGGCTACATTCAAATTCAACCCGAATCAAACAACCCATTTTCAACCCCAACCGTTCACTCTCCTACAGACCCGTTTCTTGCTCCGAACCCATTTGCACGACCCGAACCCAAGATTTTTCCATACCAGCTTCTTGTGATTCGAAGAATTTCTGTCATGCTGTGCTTTCTTACGCAGATGCTTCGTCTTCAGAAGGGAATTTAGCTATGGATACGTTTACGATTGGCGGGTCGAATTTTACGGGTACGATATTCGGGTCAATGGATTCGGGTTTCAGTAGTGATTCGGATGAAGATGAAAAGACAACCGGGTTAATGGGTATGAACCGTGGATCTCTATCTTTTGTTTCACAAATGGGGTTCAAAAAGTTTTCTTATTGCATTTCGAGCCTTGATTTTTCTGGTATTTTACTTTTCGGTGAATCGAATTTTACTTGGATTTTACCGTTAAATTACACCCCGTTAGTCGAAATTTCGC-TCCGTTACCTTATTTCGATCGAGTTGCGTATACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E314509" ref_strand="+" ref_description="SGN-E314509 [cTOB-1-K3]">
      <seq>aaaatttcagattccttcacacatcctctctctctgtccccaaaactcaaacactttcaattcacaatggaattacttctcttcttcttcctcacaccatttctcttctttattaactgctcttccattactcaaatttcttcaccattgttgattttacccctaaaaactcaacaaatctcatctgggttttcatctccaaataaactcccatttactcacaatgttactcttactgtttccctttcagttggtacacctccacagaatgtaacaatggtgctcgatactgctagtgaactttcatggctacattcaaattcaacccgaatcaaacaacccattttcaaccccaaccgttcactctcctacagacccgtttcttgctccgaacccatttgcacgacccgaacccaagatttttccataccagcttcttgtgattcgaagaatttctgtcatgctgtgctttcttacgcagatgcttcgtcttcagaagggaatttagctatggatacgtttacgattggcgggtcgaattttacgggtacgatattcgggtcaatggattcgggtttcagtagtgattcggatgaagatgaaaagacaaccgggttaatgggtatgaacccgggatctctatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="-" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="73387" stop="72142"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73087" g_stop="72442" g_length="646"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="646" r_length="646" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="-" ref_id="SGN-E314509" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314509" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73087" e_stop="72442"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTTCAGATTCCTTCACACATCCTCTCTCTCTGTCCCCAAAACTCAAACACTTTCAATTCACAATGGAATTACTTCTCTTCTTCTTCCTCACACCATTTCTCTTCTTTATTAACTGTTCTTCCATTACTCAAATTTCTTCACCATTGTTGATTTTACCCCTAAAAACTCAACAAATCTCATCTGGGTTTTCATCTCCAAATAAACTCCCATTTACTCACAATGTTACTCTTACTGTTTCCCTTTCAGTTGGTACACCTCCACAGAATGTAACAATGGTGCTCGATACTGGTAGTGAACTTTCATGGCTACATTCAAATTCAACCCGAATCAAACAACCCATTTTCAACCCCAACCGTTCACTCTCCTACAGACCCGTTTCTTGCTCCGAACCCATTTGCACGACCCGAACCCAAGATTTTTCCATACCAGCTTCTTGTGATTCGAAGAATTTCTGTCATGCTGTGCTTTCTTACGCAGATGCTTCGTCTTCAGAAGGGAATTTAGCTATGGATACGTTTACGATTGGCGGGTCGAATTTTACGGGTACGATATTCGGGTCAATGGATTCGGGTTTCAGTAGTGATTCGGATGAAGATGAAAAGACAACCGGGTTAATGGGTATGAACCGTGGATCTCTATCTT</genome_strand>
        <mrna_strand>AAAATTTCAGATTCCTTCACACATCCTCTCTCTCTGTCCCCAAAACTCAAACACTTTCAATTCACAATGGAATTACTTCTCTTCTTCTTCCTCACACCATTTCTCTTCTTTATTAACTGCTCTTCCATTACTCAAATTTCTTCACCATTGTTGATTTTACCCCTAAAAACTCAACAAATCTCATCTGGGTTTTCATCTCCAAATAAACTCCCATTTACTCACAATGTTACTCTTACTGTTTCCCTTTCAGTTGGTACACCTCCACAGAATGTAACAATGGTGCTCGATACTGCTAGTGAACTTTCATGGCTACATTCAAATTCAACCCGAATCAAACAACCCATTTTCAACCCCAACCGTTCACTCTCCTACAGACCCGTTTCTTGCTCCGAACCCATTTGCACGACCCGAACCCAAGATTTTTCCATACCAGCTTCTTGTGATTCGAAGAATTTCTGTCATGCTGTGCTTTCTTACGCAGATGCTTCGTCTTCAGAAGGGAATTTAGCTATGGATACGTTTACGATTGGCGGGTCGAATTTTACGGGTACGATATTCGGGTCAATGGATTCGGGTTTCAGTAGTGATTCGGATGAAGATGAAAAGACAACCGGGTTAATGGGTATGAACCCGGGATCTCTATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E316801" ref_strand="+" ref_description="SGN-E316801 [cTOB-6-C21]">
      <seq>aaaatttcagattccttcacacatcctctctctctgtccccaaaactcaaacactttcaattcacaatggaattacttctcttcttcttcctcacaccatttctcttctttattaactgttcttccattactcaaatttcttcaccattgttgattttacccctaaaaactcaacaaatctcatctgggttttcatctccaaataaactcccatttactcacaatgttactcttactgtttccctttcagttggtacacctccacagaatgtaacaatggtgctcgatactggtagtgaactttcatggctacattcaaattcaacccgaatcaaacaacccattttcaaccccaaccgttcactctcctacagacccgtttcttgctccgaacccatttgcacgacccgaacccaagatttttccataccagcttcttgtgattcgaagaatttctgtcatgctgtgctttcttacgcagatgcttcgtcttcagaagggaatttagctatggatacgtttacgattggcgggtcgaattttacgggtacgatattcgggtcaatggattcgggtttcagtagtgattcggatgaagatgaaaagac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="-" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="73387" stop="72180"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73087" g_stop="72480" g_length="608"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="608" r_length="608" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="-" ref_id="SGN-E316801" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316801" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73087" e_stop="72480"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTTCAGATTCCTTCACACATCCTCTCTCTCTGTCCCCAAAACTCAAACACTTTCAATTCACAATGGAATTACTTCTCTTCTTCTTCCTCACACCATTTCTCTTCTTTATTAACTGTTCTTCCATTACTCAAATTTCTTCACCATTGTTGATTTTACCCCTAAAAACTCAACAAATCTCATCTGGGTTTTCATCTCCAAATAAACTCCCATTTACTCACAATGTTACTCTTACTGTTTCCCTTTCAGTTGGTACACCTCCACAGAATGTAACAATGGTGCTCGATACTGGTAGTGAACTTTCATGGCTACATTCAAATTCAACCCGAATCAAACAACCCATTTTCAACCCCAACCGTTCACTCTCCTACAGACCCGTTTCTTGCTCCGAACCCATTTGCACGACCCGAACCCAAGATTTTTCCATACCAGCTTCTTGTGATTCGAAGAATTTCTGTCATGCTGTGCTTTCTTACGCAGATGCTTCGTCTTCAGAAGGGAATTTAGCTATGGATACGTTTACGATTGGCGGGTCGAATTTTACGGGTACGATATTCGGGTCAATGGATTCGGGTTTCAGTAGTGATTCGGATGAAGATGAAAAGAC</genome_strand>
        <mrna_strand>AAAATTTCAGATTCCTTCACACATCCTCTCTCTCTGTCCCCAAAACTCAAACACTTTCAATTCACAATGGAATTACTTCTCTTCTTCTTCCTCACACCATTTCTCTTCTTTATTAACTGTTCTTCCATTACTCAAATTTCTTCACCATTGTTGATTTTACCCCTAAAAACTCAACAAATCTCATCTGGGTTTTCATCTCCAAATAAACTCCCATTTACTCACAATGTTACTCTTACTGTTTCCCTTTCAGTTGGTACACCTCCACAGAATGTAACAATGGTGCTCGATACTGGTAGTGAACTTTCATGGCTACATTCAAATTCAACCCGAATCAAACAACCCATTTTCAACCCCAACCGTTCACTCTCCTACAGACCCGTTTCTTGCTCCGAACCCATTTGCACGACCCGAACCCAAGATTTTTCCATACCAGCTTCTTGTGATTCGAAGAATTTCTGTCATGCTGTGCTTTCTTACGCAGATGCTTCGTCTTCAGAAGGGAATTTAGCTATGGATACGTTTACGATTGGCGGGTCGAATTTTACGGGTACGATATTCGGGTCAATGGATTCGGGTTTCAGTAGTGATTCGGATGAAGATGAAAAGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E323545" ref_strand="+" ref_description="SGN-E323545 [cTOC-2-G5]">
      <seq>caagtttcacttgaagccatagaaaatttcagattccttcacacatcctctctctctgtccccaaaactcaaacactttcaattcacaatggaattacttctcttcttcttcctcacaccatttctcttctttattaactgttcttccattactcaaatttcttcaccattgttgattttacccctaaaaactcaacaaatctcatctgggttttcatctccaaataaactcccatttactcacaatgttactcttactgtttccctttcagttggtacacctccacagaatgtaacaatggtgctcgatactggtagtgaactttcatggctacattcaaattcaacccgaatcaaacaacccattttcaaccccaaccgttcactctcctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="-" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="73409" stop="72416"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73109" g_stop="72716" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="394" r_length="394" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="-" ref_id="SGN-E323545" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>394</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323545" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73109" e_stop="72716"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGTTTCACTTGAAGCCATAGAAAATTTCAGATTCCTTCACACATCCTCTCTCTCTGTCCCCAAAACTCAAACACTTTCAATTCACAATGGAATTACTTCTCTTCTTCTTCCTCACACCATTTCTCTTCTTTATTAACTGTTCTTCCATTACTCAAATTTCTTCACCATTGTTGATTTTACCCCTAAAAACTCAACAAATCTCATCTGGGTTTTCATCTCCAAATAAACTCCCATTTACTCACAATGTTACTCTTACTGTTTCCCTTTCAGTTGGTACACCTCCACAGAATGTAACAATGGTGCTCGATACTGGTAGTGAACTTTCATGGCTACATTCAAATTCAACCCGAATCAAACAACCCATTTTCAACCCCAACCGTTCACTCTCCTAC</genome_strand>
        <mrna_strand>CAAGTTTCACTTGAAGCCATAGAAAATTTCAGATTCCTTCACACATCCTCTCTCTCTGTCCCCAAAACTCAAACACTTTCAATTCACAATGGAATTACTTCTCTTCTTCTTCCTCACACCATTTCTCTTCTTTATTAACTGTTCTTCCATTACTCAAATTTCTTCACCATTGTTGATTTTACCCCTAAAAACTCAACAAATCTCATCTGGGTTTTCATCTCCAAATAAACTCCCATTTACTCACAATGTTACTCTTACTGTTTCCCTTTCAGTTGGTACACCTCCACAGAATGTAACAATGGTGCTCGATACTGGTAGTGAACTTTCATGGCTACATTCAAATTCAACCCGAATCAAACAACCCATTTTCAACCCCAACCGTTCACTCTCCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E396524" ref_strand="+" ref_description="SGN-E396524 [TUS-24-O14]">
      <seq>ctcctcttcagctcttcttcctcttatcttctcctcttcctcttctattccaactactcttcagctccaaccactcttgtcttcagcagcgccgccaggcgccaggcgccagccgccgtccacaacaagggaagcagcagtagccgcgacagcagcacagcagcagccagccacagacagcagcacagcagcaaccagccgcgacagcactcagcagcagccagccgccgaccgtgcagcagtttggtccattaaaaaaccgaaataaaaaatcgaatcgaattaataaaaatcaaaccgaaatatttcgattcggtattcgatacgcaatttacaaaaaccgaaaaccgaaaaaaccgaaaaaaacccgaaccgaaccgaaataccgaatgcccaccactatattaaatttgaagtagttatatacccatctcgattttaatttaatataaacaaataataaacccttctccaagataataaatcccttcttctccaaagttccagtaccttctagtttctacaaaatctcttcaataaattcttcttcttccctaaacaaaacaccgaaaaatctaagtaagaaatcaaaaatggcgaaagagggacctaattgggatggtttattgaaatggagtctatctcatgctgatggtaccaaacctcctcctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="79107" stop="80378"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79407" g_stop="80078" g_length="672"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="672" r_length="672" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E396524" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E396524" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79407" e_stop="80078"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTCTTCAGCTCTTCTTCCTCTTATCTTCTCCTCTTCCTCTTCTATTCCAACTACTCTTCAGCTCCAACCACTCTTGTCTTCAGCAGCGCCGCCAGGCGCCAGGCGCCAGCCGCCGTCCACAACAAGGGAAGCAGCAGTAGCCGCGACAGCAGCACAGCAGCAGCCAGCCACAGACAGCAGCACAGCAGCAACCAGCCGCGACAGCACTCAGCAGCAGCCAGCCGCCGACCGTGCAGCAGTTTGGTCCATTAAAAAACCGAAATAAAAAATCGAATCGAATTAATAAAAATCAAACCGAAATATTTCGATTCGGTATTCGATACGCAATTTACAAAAACCGAAAACCGAAAAAACCGAAAAAAACCCGAACCGAACCGAAATACCGAATGCCCACCACTATATTAAATTTGAAGTAATTATATACCCATCTCGATTTTAATTTAATATAAACAAATAATAAACCCTTCTCCAAGATAATAAATCCCTTCTTCTCCAAAGTTCCAGTACCTTCTAGTTTCTACAAAATCTCTTCAATAAATTCTTCTTCTTCCCTAAACAAAACACCGAAAAATCTAAGTAAGAAATCAAAAATGGCGAAAGAGGGACCTAATTGGGATGGTTTATTGAAATGGAGTCTATCTCATGCTGATGGTACCAAACCTCCTCCTC</genome_strand>
        <mrna_strand>CTCCTCTTCAGCTCTTCTTCCTCTTATCTTCTCCTCTTCCTCTTCTATTCCAACTACTCTTCAGCTCCAACCACTCTTGTCTTCAGCAGCGCCGCCAGGCGCCAGGCGCCAGCCGCCGTCCACAACAAGGGAAGCAGCAGTAGCCGCGACAGCAGCACAGCAGCAGCCAGCCACAGACAGCAGCACAGCAGCAACCAGCCGCGACAGCACTCAGCAGCAGCCAGCCGCCGACCGTGCAGCAGTTTGGTCCATTAAAAAACCGAAATAAAAAATCGAATCGAATTAATAAAAATCAAACCGAAATATTTCGATTCGGTATTCGATACGCAATTTACAAAAACCGAAAACCGAAAAAACCGAAAAAAACCCGAACCGAACCGAAATACCGAATGCCCACCACTATATTAAATTTGAAGTAGTTATATACCCATCTCGATTTTAATTTAATATAAACAAATAATAAACCCTTCTCCAAGATAATAAATCCCTTCTTCTCCAAAGTTCCAGTACCTTCTAGTTTCTACAAAATCTCTTCAATAAATTCTTCTTCTTCCCTAAACAAAACACCGAAAAATCTAAGTAAGAAATCAAAAATGGCGAAAGAGGGACCTAATTGGGATGGTTTATTGAAATGGAGTCTATCTCATGCTGATGGTACCAAACCTCCTCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E391663" ref_strand="+" ref_description="SGN-E391663 [TUS-24-O13]">
      <seq>ctcctcttcagctcttcttcctcttatcttctcctcttcctcttctattccaactactcttcagctccaaccactcttgtcttcagcagcgccgccaggcgccaggcgccagccgccgtccacaacaagggaagcagcagtagccgcgacagcagcacagcagcagccagccacagacagcagcacagcagcaaccagccgcgacagcactcagcagcagccagccgccgaccgtgcagcagtttggtccattaaaaaaccgaaataaaaaatcgaatcgaattaataaaaatcaaaccgaaatatttcgattcggtattcgatacgcaatttacaaaaaccgaaaaccgaaaaaaccgaaaaaaacccgaaccgaaccgaaataccgaatgcccaccactatattaaatttgaagtaagtatatacccatctcgattttaatttaatataaacaaataataaacccttctccaagataataaatcccttcttctccaaagttccagtaccttctagtttctacaaaatctcttcaataaattcttcttcttccctaaacaaaacacccaaaaaatctaagtaaaaaatcaaaaatggcgaaagagggacctaattgggatggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="79107" stop="80329"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79407" g_stop="80029" g_length="623"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="624" r_length="624" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E391663" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391663" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79407" e_stop="80029"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTCTTCAGCTCTTCTTCCTCTTATCTTCTCCTCTTCCTCTTCTATTCCAACTACTCTTCAGCTCCAACCACTCTTGTCTTCAGCAGCGCCGCCAGGCGCCAGGCGCCAGCCGCCGTCCACAACAAGGGAAGCAGCAGTAGCCGCGACAGCAGCACAGCAGCAGCCAGCCACAGACAGCAGCACAGCAGCAACCAGCCGCGACAGCACTCAGCAGCAGCCAGCCGCCGACCGTGCAGCAGTTTGGTCCATTAAAAAACCGAAATAAAAAATCGAATCGAATTAATAAAAATCAAACCGAAATATTTCGATTCGGTATTCGATACGCAATTTACAAAAACCGAAAACCGAAAAAACCGAAAAAAACCCGAACCGAACCGAAATACCGAATGCCCACCACTATATTAAATTTGAAGTAATTATATACCCATCTCGATTTTAATTTAATATAAACAAATAATAAACCCTTCTCCAAGATAATAAATCCCTTCTTCTCCAAAGTTCCAGTACCTTCTAGTTTCTACAAAATCTCTTCAATAAATTCTTCTTCTTCCCTAAACAAAACA-CCGAAAAATCTAAGTAAGAAATCAAAAATGGCGAAAGAGGGACCTAATTGGGATGGT</genome_strand>
        <mrna_strand>CTCCTCTTCAGCTCTTCTTCCTCTTATCTTCTCCTCTTCCTCTTCTATTCCAACTACTCTTCAGCTCCAACCACTCTTGTCTTCAGCAGCGCCGCCAGGCGCCAGGCGCCAGCCGCCGTCCACAACAAGGGAAGCAGCAGTAGCCGCGACAGCAGCACAGCAGCAGCCAGCCACAGACAGCAGCACAGCAGCAACCAGCCGCGACAGCACTCAGCAGCAGCCAGCCGCCGACCGTGCAGCAGTTTGGTCCATTAAAAAACCGAAATAAAAAATCGAATCGAATTAATAAAAATCAAACCGAAATATTTCGATTCGGTATTCGATACGCAATTTACAAAAACCGAAAACCGAAAAAACCGAAAAAAACCCGAACCGAACCGAAATACCGAATGCCCACCACTATATTAAATTTGAAGTAAGTATATACCCATCTCGATTTTAATTTAATATAAACAAATAATAAACCCTTCTCCAAGATAATAAATCCCTTCTTCTCCAAAGTTCCAGTACCTTCTAGTTTCTACAAAATCTCTTCAATAAATTCTTCTTCTTCCCTAAACAAAACACCCAAAAAATCTAAGTAAAAAATCAAAAATGGCGAAAGAGGGACCTAATTGGGATGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E247286" ref_strand="+" ref_description="SGN-E247286 [cLEF-46-A22]">
      <seq>tcctcttcagctcttcttcctcttatcttctcctcttcctcttctattccaactactcttcagctccaaccactcttgtcttcagcagcgccgccaggcgccaggcgccagccgccgtccacaacaagggaagcagcagtagccgcgacagcagcacagcagcagccagccacagacagcagcacagcagcaaccagccgcgacagcactcagcagcagccagccgccgaccgtgcagcagtttggtccattaaaaaaccgaaataaaaaatcgaatcgaattaataaaaatcaaaccgaaatatttcgattcggtattcgatacgcaatttacaaaaaccgaaaaccgaaaaaaccgaaaaaaacccgaaccgaaccgaaataccgaatgcccaccactatattaaatttgaagtaattatatacccatctcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="79108" stop="80142"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79408" g_stop="79842" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="435" r_length="435" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E247286" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247286" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79408" e_stop="79842"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCTTCAGCTCTTCTTCCTCTTATCTTCTCCTCTTCCTCTTCTATTCCAACTACTCTTCAGCTCCAACCACTCTTGTCTTCAGCAGCGCCGCCAGGCGCCAGGCGCCAGCCGCCGTCCACAACAAGGGAAGCAGCAGTAGCCGCGACAGCAGCACAGCAGCAGCCAGCCACAGACAGCAGCACAGCAGCAACCAGCCGCGACAGCACTCAGCAGCAGCCAGCCGCCGACCGTGCAGCAGTTTGGTCCATTAAAAAACCGAAATAAAAAATCGAATCGAATTAATAAAAATCAAACCGAAATATTTCGATTCGGTATTCGATACGCAATTTACAAAAACCGAAAACCGAAAAAACCGAAAAAAACCCGAACCGAACCGAAATACCGAATGCCCACCACTATATTAAATTTGAAGTAATTATATACCCATCTCGA</genome_strand>
        <mrna_strand>TCCTCTTCAGCTCTTCTTCCTCTTATCTTCTCCTCTTCCTCTTCTATTCCAACTACTCTTCAGCTCCAACCACTCTTGTCTTCAGCAGCGCCGCCAGGCGCCAGGCGCCAGCCGCCGTCCACAACAAGGGAAGCAGCAGTAGCCGCGACAGCAGCACAGCAGCAGCCAGCCACAGACAGCAGCACAGCAGCAACCAGCCGCGACAGCACTCAGCAGCAGCCAGCCGCCGACCGTGCAGCAGTTTGGTCCATTAAAAAACCGAAATAAAAAATCGAATCGAATTAATAAAAATCAAACCGAAATATTTCGATTCGGTATTCGATACGCAATTTACAAAAACCGAAAACCGAAAAAACCGAAAAAAACCCGAACCGAACCGAAATACCGAATGCCCACCACTATATTAAATTTGAAGTAATTATATACCCATCTCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E302012" ref_strand="+" ref_description="SGN-E302012 [cLEX-3-G8]">
      <seq>tcagctcttcttcctcttatcttctcctcttcctcttctattccaactactcttcagctccaaccactcttgtcttcagcagcgccgccaggcgccaggcgccagccgccgtccacaacaagggaagcagcagtagccgcgacagcagcacagcagcagccagccacagacagcagcacagcagcaaccagccgcgacagcactcagcagcagccagccgccgaccgtgcagcagtttggtccattaaaaaaccgaaataaaaaatcgaatcgaattaataaaaatcaaaccgaaatatttcgattcggtattcgatacgcaatttacaaaaaccgaaaaccgaaaaaaccgaaaaaaacccgaaccgaaccgaaataccgaatgcccaccactatattaaatttgaagtaattatatacccatctcgattttaatttaatataaacaaataataaaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="79114" stop="80173"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79414" g_stop="79873" g_length="460"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="460" r_length="460" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E302012" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302012" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79414" e_stop="79873"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCTCTTCTTCCTCTTATCTTCTCCTCTTCCTCTTCTATTCCAACTACTCTTCAGCTCCAACCACTCTTGTCTTCAGCAGCGCCGCCAGGCGCCAGGCGCCAGCCGCCGTCCACAACAAGGGAAGCAGCAGTAGCCGCGACAGCAGCACAGCAGCAGCCAGCCACAGACAGCAGCACAGCAGCAACCAGCCGCGACAGCACTCAGCAGCAGCCAGCCGCCGACCGTGCAGCAGTTTGGTCCATTAAAAAACCGAAATAAAAAATCGAATCGAATTAATAAAAATCAAACCGAAATATTTCGATTCGGTATTCGATACGCAATTTACAAAAACCGAAAACCGAAAAAACCGAAAAAAACCCGAACCGAACCGAAATACCGAATGCCCACCACTATATTAAATTTGAAGTAATTATATACCCATCTCGATTTTAATTTAATATAAACAAATAATAAACCC</genome_strand>
        <mrna_strand>TCAGCTCTTCTTCCTCTTATCTTCTCCTCTTCCTCTTCTATTCCAACTACTCTTCAGCTCCAACCACTCTTGTCTTCAGCAGCGCCGCCAGGCGCCAGGCGCCAGCCGCCGTCCACAACAAGGGAAGCAGCAGTAGCCGCGACAGCAGCACAGCAGCAGCCAGCCACAGACAGCAGCACAGCAGCAACCAGCCGCGACAGCACTCAGCAGCAGCCAGCCGCCGACCGTGCAGCAGTTTGGTCCATTAAAAAACCGAAATAAAAAATCGAATCGAATTAATAAAAATCAAACCGAAATATTTCGATTCGGTATTCGATACGCAATTTACAAAAACCGAAAACCGAAAAAACCGAAAAAAACCCGAACCGAACCGAAATACCGAATGCCCACCACTATATTAAATTTGAAGTAATTATATACCCATCTCGATTTTAATTTAATATAAACAAATAATAAACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E255789" ref_strand="+" ref_description="SGN-E255789 [cLEG-35-A23]">
      <seq>tccaactactcttcagctccaaccactcttgtcttcagcagcgccgccaggcgccaggcgccagccgccgtccacaacaagggaagcagcagtagccgcgacagcagcacagcagcagccagccacagacagcagcacagcagcaaccagccgcgacagcactcagcagcagccagccgccgaccgtgcagcagtttggtccattaaaaaaccgaaataaaaaatcgaatcgaattaataaaaatcaaaccgaaatatttcgattcggtattcgatacgcaatttacaaaaaccgaaaaccgaaaaaaccgaaaaaaacccgaaccgaaccgaaataccgaatgcccaccactatattaaatttgaagtaattatatacccatctcgattttaatttaatataaacaaataataaacccttctccaagataataaatcccttcttctccaaagttccagtaccttctagtttctacaaaatctcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="79155" stop="80241"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79455" g_stop="79941" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="487" r_length="487" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E255789" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E255789" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79455" e_stop="79941"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAACTACTCTTCAGCTCCAACCACTCTTGTCTTCAGCAGCGCCGCCAGGCGCCAGGCGCCAGCCGCCGTCCACAACAAGGGAAGCAGCAGTAGCCGCGACAGCAGCACAGCAGCAGCCAGCCACAGACAGCAGCACAGCAGCAACCAGCCGCGACAGCACTCAGCAGCAGCCAGCCGCCGACCGTGCAGCAGTTTGGTCCATTAAAAAACCGAAATAAAAAATCGAATCGAATTAATAAAAATCAAACCGAAATATTTCGATTCGGTATTCGATACGCAATTTACAAAAACCGAAAACCGAAAAAACCGAAAAAAACCCGAACCGAACCGAAATACCGAATGCCCACCACTATATTAAATTTGAAGTAATTATATACCCATCTCGATTTTAATTTAATATAAACAAATAATAAACCCTTCTCCAAGATAATAAATCCCTTCTTCTCCAAAGTTCCAGTACCTTCTAGTTTCTACAAAATCTCTTC</genome_strand>
        <mrna_strand>TCCAACTACTCTTCAGCTCCAACCACTCTTGTCTTCAGCAGCGCCGCCAGGCGCCAGGCGCCAGCCGCCGTCCACAACAAGGGAAGCAGCAGTAGCCGCGACAGCAGCACAGCAGCAGCCAGCCACAGACAGCAGCACAGCAGCAACCAGCCGCGACAGCACTCAGCAGCAGCCAGCCGCCGACCGTGCAGCAGTTTGGTCCATTAAAAAACCGAAATAAAAAATCGAATCGAATTAATAAAAATCAAACCGAAATATTTCGATTCGGTATTCGATACGCAATTTACAAAAACCGAAAACCGAAAAAACCGAAAAAAACCCGAACCGAACCGAAATACCGAATGCCCACCACTATATTAAATTTGAAGTAATTATATACCCATCTCGATTTTAATTTAATATAAACAAATAATAAACCCTTCTCCAAGATAATAAATCCCTTCTTCTCCAAAGTTCCAGTACCTTCTAGTTTCTACAAAATCTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E251023" ref_strand="+" ref_description="SGN-E251023 [cLEG-17-I4]">
      <seq>ttgtcttcagcagcgccgccaggctccaggcgccagccgccgtccacaacaagggaagcagcagtagccgcgacagcagcacagcagcagccagccacagacagcagcacagcagcaaccagccgcgacagcactcagcagcagccagccgccgaccgtgcagcagtttggtccattaaaaaaccgaaataaaaaatcgaatcgaattaataaaaatcaaaccgaaatatttcgattcggtattcgatacgcaatttacaaaaaccgaaaaccgaaaaaaccgaaaaaaacccgaaccgaaccgaaataccgaatgcccaccactatattaaatttgaagtaattatatacccatctcgattttaatttaatataaacaaataataaacccttctccaagataataaatcccttcttctccaaagttccagtaccttctagtttctacaaaatctcttcaataaattcttcttcttccctaaacaaaacaccgaaaaatctaagtaagaaatcaaaaatggcgaaagagggacctaattgggatggtttattgaaatggagtctatctcatgctgatggtacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="79183" stop="80365"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79483" g_stop="80065" g_length="583"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="583" r_length="583" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E251023" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E251023" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79483" e_stop="80065"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTCTTCAGCAGCGCCGCCAGGCGCCAGGCGCCAGCCGCCGTCCACAACAAGGGAAGCAGCAGTAGCCGCGACAGCAGCACAGCAGCAGCCAGCCACAGACAGCAGCACAGCAGCAACCAGCCGCGACAGCACTCAGCAGCAGCCAGCCGCCGACCGTGCAGCAGTTTGGTCCATTAAAAAACCGAAATAAAAAATCGAATCGAATTAATAAAAATCAAACCGAAATATTTCGATTCGGTATTCGATACGCAATTTACAAAAACCGAAAACCGAAAAAACCGAAAAAAACCCGAACCGAACCGAAATACCGAATGCCCACCACTATATTAAATTTGAAGTAATTATATACCCATCTCGATTTTAATTTAATATAAACAAATAATAAACCCTTCTCCAAGATAATAAATCCCTTCTTCTCCAAAGTTCCAGTACCTTCTAGTTTCTACAAAATCTCTTCAATAAATTCTTCTTCTTCCCTAAACAAAACACCGAAAAATCTAAGTAAGAAATCAAAAATGGCGAAAGAGGGACCTAATTGGGATGGTTTATTGAAATGGAGTCTATCTCATGCTGATGGTACC</genome_strand>
        <mrna_strand>TTGTCTTCAGCAGCGCCGCCAGGCTCCAGGCGCCAGCCGCCGTCCACAACAAGGGAAGCAGCAGTAGCCGCGACAGCAGCACAGCAGCAGCCAGCCACAGACAGCAGCACAGCAGCAACCAGCCGCGACAGCACTCAGCAGCAGCCAGCCGCCGACCGTGCAGCAGTTTGGTCCATTAAAAAACCGAAATAAAAAATCGAATCGAATTAATAAAAATCAAACCGAAATATTTCGATTCGGTATTCGATACGCAATTTACAAAAACCGAAAACCGAAAAAACCGAAAAAAACCCGAACCGAACCGAAATACCGAATGCCCACCACTATATTAAATTTGAAGTAATTATATACCCATCTCGATTTTAATTTAATATAAACAAATAATAAACCCTTCTCCAAGATAATAAATCCCTTCTTCTCCAAAGTTCCAGTACCTTCTAGTTTCTACAAAATCTCTTCAATAAATTCTTCTTCTTCCCTAAACAAAACACCGAAAAATCTAAGTAAGAAATCAAAAATGGCGAAAGAGGGACCTAATTGGGATGGTTTATTGAAATGGAGTCTATCTCATGCTGATGGTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E331585" ref_strand="+" ref_description="SGN-E331585 [cTOD-9-H16]">
      <seq>ttgtcttcagcagcgccgccaggcgccaggcgccagccgccgtccacaacaagggaagcagcagtagccgcgacagcagcacagcagcagccagccacagacagcagcacagcagcaaccagccgcgacagcactcagcagcagccagccgccgaccgtgcagcagtttggtccattaaaaaaccgaaataaaaaatcgaatcgaattaataaaaatcaaaccgaaatatttcgattcggtattcgatacgcaatttacaaaaaccgaaaaccgaaaaaaccgaaaaaaacccgaaccgaaccgaaataccgaatgcccaccactatattaaatttgaagtaattatatacccatctcgattttaatttaatataaacaaataataaacccttctccaagataataaatcccttcttctccaaagttccagtaccttctagtttctacaaaatctcttcaataaattcttcttcttccctaaacaaaacaccgaaaaatctaagtaagaaatcaaaaatggcgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="79183" stop="80307"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79483" g_stop="80007" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="525" r_length="525" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E331585" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331585" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79483" e_stop="80007"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTCTTCAGCAGCGCCGCCAGGCGCCAGGCGCCAGCCGCCGTCCACAACAAGGGAAGCAGCAGTAGCCGCGACAGCAGCACAGCAGCAGCCAGCCACAGACAGCAGCACAGCAGCAACCAGCCGCGACAGCACTCAGCAGCAGCCAGCCGCCGACCGTGCAGCAGTTTGGTCCATTAAAAAACCGAAATAAAAAATCGAATCGAATTAATAAAAATCAAACCGAAATATTTCGATTCGGTATTCGATACGCAATTTACAAAAACCGAAAACCGAAAAAACCGAAAAAAACCCGAACCGAACCGAAATACCGAATGCCCACCACTATATTAAATTTGAAGTAATTATATACCCATCTCGATTTTAATTTAATATAAACAAATAATAAACCCTTCTCCAAGATAATAAATCCCTTCTTCTCCAAAGTTCCAGTACCTTCTAGTTTCTACAAAATCTCTTCAATAAATTCTTCTTCTTCCCTAAACAAAACACCGAAAAATCTAAGTAAGAAATCAAAAATGGCGAA</genome_strand>
        <mrna_strand>TTGTCTTCAGCAGCGCCGCCAGGCGCCAGGCGCCAGCCGCCGTCCACAACAAGGGAAGCAGCAGTAGCCGCGACAGCAGCACAGCAGCAGCCAGCCACAGACAGCAGCACAGCAGCAACCAGCCGCGACAGCACTCAGCAGCAGCCAGCCGCCGACCGTGCAGCAGTTTGGTCCATTAAAAAACCGAAATAAAAAATCGAATCGAATTAATAAAAATCAAACCGAAATATTTCGATTCGGTATTCGATACGCAATTTACAAAAACCGAAAACCGAAAAAACCGAAAAAAACCCGAACCGAACCGAAATACCGAATGCCCACCACTATATTAAATTTGAAGTAATTATATACCCATCTCGATTTTAATTTAATATAAACAAATAATAAACCCTTCTCCAAGATAATAAATCCCTTCTTCTCCAAAGTTCCAGTACCTTCTAGTTTCTACAAAATCTCTTCAATAAATTCTTCTTCTTCCCTAAACAAAACACCGAAAAATCTAAGTAAGAAATCAAAAATGGCGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E746293" ref_strand="+" ref_description="SGN-E746293 [GI|47104761]">
      <seq>accgtgcagcagtttggtccattaaaaaaccgaaataaaaaatcgaatcgaattaataaaaatcaaaccgaaatatttcgattcggtattcgatacgcaatttacaaaaaccgaaaaccgaaaaaaccgaaaaaaacccgaaccgaaccgaaataccgaatgcccaccactatattaaatttgaagtaattatatacccatctcgattttaatttaatataaacaaataataaacccttctccaagataataaatcccttcttctccaaagttccagtaccttctagtttctacaaaatctcttcaataaattcttcttcttccctaaacaaaacaccgaaaaatctaagtaagaaatcaaaaatggcgaaagagggacctaattgggatggtttattgaaatggagtctatctcatgctgatggtaccaaacctcctcctcgcaatttgagtgaggaggacaggaggtggttcatggaggctatgcaagctcaaactgttgatgtgattaagagaatgaaggagattacacttgtcatgcaaacaccagagcaggttttggaatcacagggggtgacttcccaagatattgaagatatgctggatgagctacaagaacatgtcgaatcaattgatatggctaatgatctgaattcaattggtggattggtgcctcttcttggttacttaaagaactcccatgcaaacattagagccaaagcggcagaagtcgtaagtacaattgttcagaacaacccgaggagccaacaactggtaatggaagctaatggcctagaaccccttctgtcaaattttacctcagatcctgatgttactgcccgcactaaagctcttggtgcaatttcatctttaattaggcacaacaagcctgccattgctgcatttcgtcttgcaaatggttatgcaggtttaagagatgctttgagttctgagagtgtgagatttcagaggaaagcccttaacttgatccattatttactacatgagaatcattcagactgcaatgtagtgactgagctaggatttcctcgagttatgatgcatctagcctctagtgatgatggagaagtgcgagagggtgccctacaaggtcttcttgaccttgcccaagacaagacaggagaggttgctggctcctcatcgactgaagaaaatgagaaactcaagcaaatactccaggagcgaattaaggggatttcctctatgtcacctgaagatcttggtgctgctaaagaagagaggcaacttgtagattccctctggaatacttgctacaatgaaccttcctctcttagagagaaaggcctagttgttctccccggagaggatgcattaccacctgatgttgctagcaagcattttgaacctcctctgagagcttgggctgcaaataggaacgaggatactaagccaagtaacgaaaagaaacaggctcccttattgctaggcctaggtccacctacacagggtcctcctgtgcagaatagctctagtggagccatgtctggggaagaaaatagagacacctctgcatgatgtacatttttgggcaataccaggttattcagcttaatatatctttgtgatattacaaataacactgtgttaaatgccaagtgttttctggataattttgagtctttcctctctgtcatgtcacacttccaatttttcttcatttcctttgttgtttaaccaaattctcaagtgtaatgctgtatttgttttggttatagtatacgtacaacattgactgttgaatctgtttttattttggtgaattttatcacaatatgaaaatctgaactattactagtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="79337" stop="103899"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79637" g_stop="80088" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="452" r_length="452" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80089" i_stop="80743" i_length="655">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80744" g_stop="80886" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="595" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80887" i_stop="80975" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80976" g_stop="81026" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="646" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81027" i_stop="83112" i_length="2086">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83113" g_stop="83334" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="647" r_stop="868" r_length="222" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83335" i_stop="83454" i_length="120">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="83455" g_stop="83557" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="869" r_stop="971" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="83558" i_stop="83679" i_length="122">
            <donor d_prob="0.700" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="83680" g_stop="84546" g_length="867"/>
          <reference_exon_boundary r_type="cDNA" r_start="972" r_stop="1838" r_length="867" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="84547" i_stop="87125" i_length="2579">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.179" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="87126" g_stop="87142" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1839" r_stop="1855" r_length="17" r_score="0.647"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E746293" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1855</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746293" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79637" e_stop="80088"/>
          <exon e_start="80744" e_stop="80886"/>
          <exon e_start="80976" e_stop="81026"/>
          <exon e_start="83113" e_stop="83334"/>
          <exon e_start="83455" e_stop="83557"/>
          <exon e_start="83680" e_stop="84546"/>
          <exon e_start="87126" e_stop="87142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCGTGCAGCAGTTTGGTCCATTAAAAAACCGAAATAAAAAATCGAATCGAATTAATAAAAATCAAACCGAAATATTTCGATTCGGTATTCGATACGCAATTTACAAAAACCGAAAACCGAAAAAACCGAAAAAAACCCGAACCGAACCGAAATACCGAATGCCCACCACTATATTAAATTTGAAGTAATTATATACCCATCTCGATTTTAATTTAATATAAACAAATAATAAACCCTTCTCCAAGATAATAAATCCCTTCTTCTCCAAAGTTCCAGTACCTTCTAGTTTCTACAAAATCTCTTCAATAAATTCTTCTTCTTCCCTAAACAAAACACCGAAAAATCTAAGTAAGAAATCAAAAATGGCGAAAGAGGGACCTAATTGGGATGGTTTATTGAAATGGAGTCTATCTCATGCTGATGGTACCAAACCTCCTCCTCGCAATTTGAGGTAACCAAATTCGAATCAATGAATTTCTTTGTTTTATAGCAAAAGATTGAAACTTTTGATATGGGTTTTGTTGGTTGAATAGTAATTTCAGTTTAGATAGTTTGTAGGTTTGAGTTGTGTGCTGTGCACACTAAGCCTCTTGTGTTTAAGTGGAGAGGGTGGGCTTATTGTTCTTGTTTTCAAAGGTTGTAGTGTAAAAGAGGGGTTCTGTAGGTGATGATGACAAGCTAAAAATAGTTGAAACATGAGTGGAATTGATAAAAGAGGATTTATGTAGCAGGCAGATTGGTTTTGGGTTGATTGGGGTAGTATTTGAAAAAAGTTTCCATTTTATATGTTCATTGATTGGTGTAGGGATAGATCTTTTTGTAGTATGCTTTGTCATGGTTTCTTTTAGCATTTTGTCTCGACTTCTTTACTTCAGTTGTTTTCATTTTTCGAATTGTGTTGTAATGATTTTACTTGAGCTGAGGGTCTATGAGAAACAACATCATTATCCTTCCCAAACCCCACTTATGGAATTACACTTGGTATCTTATTCTTGTTGATTGATTAATTGGTGTAGTAATTTGAATGATTCTATTTTTATTTGTTCTTTTCTGTGGAAGTTGGTCTTATATTGAAGTTATTGGTTGATTGTGTTACTGTGGGTCAGTGAGGAGGACAGGAGGTGGTTCATGGAGGCTATGCAAGCTCAAACTGTTGATGTGATTAAGAGAATGAAGGAGATTACACTTGTCATGCAAACACCAGAGCAGGTTTTGGAATCACAGGGGGTGACTTCCCAAGATATTGAAGGTACTTGTTTAGTTTTTCTTGATAATGTGTAATCATATTTTATGAATTTTACTCGTTTTGACTTTTTTGCTGGCCTTGTGATTTCACAGATATGCTGGATGAGCTACAAGAACATGTCGAATCAATTGATATGGCTAATGGTGAGTTCTTGGTGTAATTTAGTTATTCAGAAATGTGTGTGTATCATGATTTGGTAGTTACGCATATTACATAATTCTTGCTAACCAGCTAATTTGGAATTGAGGTCTTGTTGTGGAAGCTCTATCTGTTAGAGTGTCCCACATTAGTTGAGGGAATAGATTGTTGTCTCCTTATAGTATTGGACAATTCTTGTCACATGAGCTAGCTTTTGTTGTTGATTTAGGCCCAATTCTTGTCTCCATTTCTTAATATGGAGTTAGAGCTGCATCAGTATTTTCTTAGTTTACTGAATACTAGGCCCAATGTTAAATTGTTCATGCTCTGGTTATCTACTCTCGGTTATCAGAGGAGACTTAACATCTCACATTGTTTGAAAGAATGACCCCTTGTCTTTTATATATTTTTTGCTCAATCCTCACCTCTTAAGCTAGCTTTTGGGGTCCAGTGCCCAAGGCCAATTCACTTGATAATATCATGTAGGTTTAATTGAAGTTTCCAATGTTGCACGTCATGTGCTTGAACTTCGCCACATTCAAAATCACTGTATTTAAGTGGACGAGAGTAGAGGCGCGTACCAATTATTGCCTAGTTATGAGCCGGCCCTCGGAATTTCTCGGCAATTAAAACAAAATTGTCCTGATCAAAGAGTAGTTTCATTGGTTATATGAGTTCATTCTTTTGCTGTTCTTTGACAAAGGTAGTCTGTAGTTCATATCATTGTGTTCATCTAGGAGCCAAGATTGTAATTATTTCCTGTTTTGTGAAGTGTGACCTGACAAGCATCCTGTATTTCTGTGAGTAGATACTGACCAGCATGCATGTTGGATACTCCATAAATAGTGCATATTTGAAGAATCCGACACGGGTGCAACAACATTTTTGGAGAGTTTGAGCAACATAGTTCTGCAATGGTTTTTTCTTAGACTGAAGAATTTTTGTTCTGTCTCAAAATTGCAGTAATGATATTGCTCTCATCTTTTACCTATGATAAATTCAACGACGTACATCCACTCATTTCAAGGAAAACCATGTGAGAATAGGTGCTCAGTAAAGTTATGCAACTTCATGATAATCTCTATTGAAGATGTTTGTGCTCCATAATCACATATTCAAACAAATAAAAACCTCAGTCACACATATCCTCTTTGATGTTGCTCCTGATTTCCAGATGTTTATCTCTGGTTCCTAGTTATTGTAATTGGTTGTGTTCAGATAATAATTACTTGTTGAAAAACAAAAAATGAAGCATATTAGACCAAGCTGACACTATTAAGTATTCCATAATATACATCACTCTGATCCTCCATCATGCCTTTTTCCGTCATAAGCTTAATTCTGATAATTTATGTCAGCAGTCACAATTTTCTTTTAATATGTATTTCGTATGAATGTACTCTTGGTGTTATTGTGATTTGTGCTCTACATTATGAGGTCCTTGAGACTTCTAGTCAACCTAGAAGTAAAGAAAGAAAGGTCTACCAAGTAGAAAAGAAATAAATGAAGAGGTTTCTCGTTTACTTTGGTATGAATCAGTTAAGGGGCTTTCATGAGCATGAAGAGAATGGGTATATCCTACAGTTTGAGATGTTTTTACTCTGTTGCCTCTTTAAGAGCTTGGTAACTGGTTGCTTCCTTGAATTGAATGGAACACTTCAGAACAAGGCCTCCAAGAGTATCTAAGAGTATGGAACAAAGTAAAAAACATGTAATCTCTCATCCTTTACAGCATTAATGTTAAACTGGAATGCCTATGACTAAGCTATAACGGATATCAAGAGCCACTCGAACCTGGTAGGCCGTATTCCATGGTTACTGCTGGAAACTAGAAAAAGAGAAGAGGACCAGAAAGACCTGGGGGAAGTGGTCTATACTTTGTTAGTGTTACTGGCTCATAGGTAATCTTTACTATCAGCACTTGGACATTCCGCTCTTTGTGTCCTTTCCCTCCTCATTCCTTGGGGATTTCGTTCTCTTTACTTGCTTTGTTGTCATTTTCTGTTTGAGCTTTCAATATTTAATTATGTGGTATTCCCATTATTAAAAGTTTTAGTCTTATGCTCGATTTCTTTTATTGTTATTCGGCAGATCTGAATTCAATTGGTGGATTGGTGCCTCTTCTTGGTTACTTAAAGAACTCCCATGCAAACATTAGAGCCAAAGCGGCAGAAGTCGTAAGTACAATTGTTCAGAACAACCCGAGGAGCCAACAACTGGTAATGGAAGCTAATGGCCTAGAACCCCTTCTGTCAAATTTTACCTCAGATCCTGATGTTACTGCCCGCACTAAAGCTCTTGGTGCAATTTCATGTGAGTACTTTCCCCGTTATGATTTATTAGTTAAGTGTGCCCTTTAAATTTTGGTGTCATGTCATCTGTGTTTTCCAGTAGCGTTGATCAACTAGTTTTTTTATTTTTCCTTTATTCCAGCTTTAATTAGGCACAACAAGCCTGCCATTGCTGCATTTCGTCTTGCAAATGGTTATGCAGGTTTAAGAGATGCTTTGAGTTCTGAGAGTGTGAGATTTCAGAGGTACTATTTTCTATATCATGCACTAGACGTTTCTGAATCAACCATTGATGAAGCTGCTGCTTTCCCGTAAACCTTCCTCTTTTATATTCCTTTCTAATAGGTATAGTCCTGTTCTTTTGCAGGAAAGCCCTTAACTTGATCCATTATTTACTACATGAGAATCATTCAGACTGCAATGTAGTGACTGAGCTAGGATTTCCTCGAGTTATGATGCATCTAGCCTCTAGTGATGATGGAGAAGTGCGAGAGGGTGCCCTACAAGGTCTTCTTGACCTTGCCCAAGACAAGACAGGAGAGGTTGCTGGCTCCTCATCGACTGAAGAAAATGAGAAACTCAAGCAAATACTCCAGGAGCGAATTAAGGGGATTTCCTCTATGTCACCTGAAGATCTTGGTGCTGCTAAAGAAGAGAGGCAACTTGTAGATTCCCTCTGGAATACTTGCTACAATGAACCTTCCTCTCTTAGAGAGAAAGGCCTAGTTGTTCTCCCCGGAGAGGATGCATTACCACCTGATGTTGCTAGCAAGCATTTTGAACCTCCTCTGAGAGCTTGGGCTGCAAATAGGAACGAGGATACTAAGCCAAGTAACGAAAAGAAACAGGCTCCCTTATTGCTAGGCCTAGGTCCACCTACACAGGGTCCTCCTGTGCAGAATAGCTCTAGTGGAGCCATGTCTGGGGAAGAAAATAGAGACACCTCTGCATGATGTACATTTTTGGGCAATACCAGGTTATTCAGCTTAATATATCTTTGTGATATTACAAATAACACTGTGTTAAATGCCAAGTGTTTTCTGGATAATTTTGAGTCTTTCCTCTCTGTCATGTCACACTTCCAATTTTTCTTCATTTCCTTTGTTGTTTAACCAAATTCTCAAGTGTAATGCTGTATTTGTTTTGGTTATAGTATACGTACAACATTGACTGTTGAATCTGTTTTTATTTTGGTGAATTTTATCACAATATGAAAATCTGAACTATTACTAGTATTGCTGTTCATTGACTTCCATTAATTTTCTGCTATGACTTGAGTTACATAAGTTGAGGACAACAAACTGCCTCTAGATGGACATGTGTTTCCATCCAATCCTAAGGTACATGAAACTTGTATTACAGATTCCCAGAACTCTTTATTTTGGAGGGCAAAAGATAATGACATACCTTGTAGCCCTACACCTGTTTAGGCTAGAAGACTCATCAAATGCATAACTGTAAGCCTTGGGACAGATGGCTTTAAATAGATGAGCAAAAATAGTAGGTTTGCAAGTTTTGGGATCTGCAAACTTTCCTGTGCAGCAGTACTTGGCTGATTGTATAGCCAAGCAAGCACTCTTACACCCTACCACTTCTCCATCAACCTTCACTTCTAGTGCAGATGGGCAACATATATTCAGATCAACATCACACTCCGCCACGCCACAACCTGTTCCTCCACCTACAGGTCTCATTGAAACTGGCACGTTGAAGCCATCGACCAAGCTCACATCGTAGAAATGCAGGGGCGAAGTTGATGAGCCTAGTGTCATTTCCACAACAGTAGCTGGTGGCTTACCTCCTAACCCCCTGCATTTTAACTGACCATTACAGTCTCCAGTATCACATGAGCCTTGACCAGTCTTATTAAAGTGACAATTCTGCCTGGCCCATAGCCTACCTGACCACTTCTCAGGCACATCGAAGACTACTTCGTCACCACTTCTCATATGAAAGCCACCATCTTTAGGAGTCATCTTCCCTGTATTCCCAAGAATTCCAGGCCATATGCTTCTTCTGCAGTTGTTCACTAGGATAAGTTGTGTCCCATCTGCAGTCACATGAAAAAGAGTAAAACAAGTCAAGAAGATATTGTGCATTCAAACAAGCTAGGACATAGATTAAGAGTCAGGGAATTACTTGTGCTGACAAGAAAGAGGTATAGACAGAGTGCAATACATAGTAGATGAGTTAAAATCTGCATTTTGACACTTTGAGAAGCTGAAGCTCAGGTAAACTGAGTCAGTGGGGAGTGGAAGAGCTAGCTCAAGTTTATAAGTACAAACTAAATATTCTGTTTAACTGTGTGCTTTTAGTTTATTATAACCAACAATGGTATCTTTTTTACCTTTCTTTTGGGAACACGGGGCATATATGCATTGCTTCAAGTGTAGGACTTGTACCACACTATAGATTAATGTGATTTGGAGATATACTTAGCTTGTGTAGATGCTTCAACTCTACTCACTCATCACAAAGCTAGAATTGTCATGGTCTATGTTGCTCGAACTATTAAAAAATATTAATGTGCGCGTGTTTGATTCTCCAAAAATAGTTGACTCACTCATCAGAGAAGCTAGAATTGTCATGGTCGATGTCGTCTAGACTCGATGTCAATGTGTCGGGTTCTTCAACAATAGTATATTTCTGGAGAAATCGACACAATTACGGAATCAAAAGTGAAAAATATTGCGCGAGATTTAGGCGGTGGTTATTGATCAGATAATTTATTCGTGATACGAGTTATTTAAAAACATGTGAGATGACCAAAAATATTGTAATAAAGTTGCTCTCTTTTTATTGTGCATAAAATAATAGTACATAAATTTTCTCATAATTTATACACGTATTAATTACATGAGTTTCCAAATTGTAATCTATTAATTTTTACCTCCTAAACACATACTCACATATTCTAATTATAATATATGTCTAACTTATCTCAAAACTAGCTATCACACGATCCTAGTATTTTTATCTGATCAGATCTGAATAAGTTATTTTTGTTAAAAGAAAACTGTCTTACACTAATAAGTATTGTGATTAAGCTTTAAAAATGAAAAGGACTTGAGCTGCATTAAGCTTTAAGCTATCGTTTTAACTTAACAGTAAGGATTAGAATGGTCCCTAATATCTAATTAACACCTAATAGTGGATATATATAGTAGCAAACGTATATGTTTAACTTTTCAAATGTATATGTACATAATTTTCAAACTTAATCAATTGTGTCGATCAACTTTTTGATTAATCTAGAAATATTTTAATTTCACAATTTTACTGTCCGTTTTACTATAATATTTGTTTGCAATACAATGTATATTTTCATTGCATAATGAGAAAGGAGAGAAAACGAAAAATTAATATGTAGGTTGGATTACAATAAAAAGAATATTTTTATTCTCTAACTTTGAATTTCATGGTATTAAAAGAATCATGTAATCATAAATTTAAGGTACCAATACACACGAAAATTGATGTTCTAATTCACTTATCAAGAATTTAATTTTTCTAATGACTTATCTGTTTCAAATTATATATTGTGTTTCTCTTCATTTGGGTAATTTTAGTATGCTTGAAGATATAATTTTCTATTAAATTAATATTCAGTCAAATTATCCAGATCACATCTATTAACTCTCGAATAGTGGATTAAAAGATTTAAACCTTTCAATTCGATGAACGGAAAGATTGAAGTTCAACTTATTATATATGGATATGATTTTGAAAGAAATGATATTAGAAGTTGTAGAGGTCGTCGTCTTTCATATTGAGATTTCAAAAGAAATTTAAATCGATAATTTTTTTACACAGAATATGAAAAGATAATA</genome_strand>
        <mrna_strand>ACCGTGCAGCAGTTTGGTCCATTAAAAAACCGAAATAAAAAATCGAATCGAATTAATAAAAATCAAACCGAAATATTTCGATTCGGTATTCGATACGCAATTTACAAAAACCGAAAACCGAAAAAACCGAAAAAAACCCGAACCGAACCGAAATACCGAATGCCCACCACTATATTAAATTTGAAGTAATTATATACCCATCTCGATTTTAATTTAATATAAACAAATAATAAACCCTTCTCCAAGATAATAAATCCCTTCTTCTCCAAAGTTCCAGTACCTTCTAGTTTCTACAAAATCTCTTCAATAAATTCTTCTTCTTCCCTAAACAAAACACCGAAAAATCTAAGTAAGAAATCAAAAATGGCGAAAGAGGGACCTAATTGGGATGGTTTATTGAAATGGAGTCTATCTCATGCTGATGGTACCAAACCTCCTCCTCGCAATTTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGAGGACAGGAGGTGGTTCATGGAGGCTATGCAAGCTCAAACTGTTGATGTGATTAAGAGAATGAAGGAGATTACACTTGTCATGCAAACACCAGAGCAGGTTTTGGAATCACAGGGGGTGACTTCCCAAGATATTGAAG.........................................................................................ATATGCTGGATGAGCTACAAGAACATGTCGAATCAATTGATATGGCTAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGAATTCAATTGGTGGATTGGTGCCTCTTCTTGGTTACTTAAAGAACTCCCATGCAAACATTAGAGCCAAAGCGGCAGAAGTCGTAAGTACAATTGTTCAGAACAACCCGAGGAGCCAACAACTGGTAATGGAAGCTAATGGCCTAGAACCCCTTCTGTCAAATTTTACCTCAGATCCTGATGTTACTGCCCGCACTAAAGCTCTTGGTGCAATTTCAT........................................................................................................................CTTTAATTAGGCACAACAAGCCTGCCATTGCTGCATTTCGTCTTGCAAATGGTTATGCAGGTTTAAGAGATGCTTTGAGTTCTGAGAGTGTGAGATTTCAGAG..........................................................................................................................GAAAGCCCTTAACTTGATCCATTATTTACTACATGAGAATCATTCAGACTGCAATGTAGTGACTGAGCTAGGATTTCCTCGAGTTATGATGCATCTAGCCTCTAGTGATGATGGAGAAGTGCGAGAGGGTGCCCTACAAGGTCTTCTTGACCTTGCCCAAGACAAGACAGGAGAGGTTGCTGGCTCCTCATCGACTGAAGAAAATGAGAAACTCAAGCAAATACTCCAGGAGCGAATTAAGGGGATTTCCTCTATGTCACCTGAAGATCTTGGTGCTGCTAAAGAAGAGAGGCAACTTGTAGATTCCCTCTGGAATACTTGCTACAATGAACCTTCCTCTCTTAGAGAGAAAGGCCTAGTTGTTCTCCCCGGAGAGGATGCATTACCACCTGATGTTGCTAGCAAGCATTTTGAACCTCCTCTGAGAGCTTGGGCTGCAAATAGGAACGAGGATACTAAGCCAAGTAACGAAAAGAAACAGGCTCCCTTATTGCTAGGCCTAGGTCCACCTACACAGGGTCCTCCTGTGCAGAATAGCTCTAGTGGAGCCATGTCTGGGGAAGAAAATAGAGACACCTCTGCATGATGTACATTTTTGGGCAATACCAGGTTATTCAGCTTAATATATCTTTGTGATATTACAAATAACACTGTGTTAAATGCCAAGTGTTTTCTGGATAATTTTGAGTCTTTCCTCTCTGTCATGTCACACTTCCAATTTTTCTTCATTTCCTTTGTTGTTTAACCAAATTCTCAAGTGTAATGCTGTATTTGTTTTGGTTATAGTATACGTACAACATTGACTGTTGAATCTGTTTTTATTTTGGTGAATTTTATCACAATATGAAAATCTGAACTATTACTAGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E269527" ref_strand="+" ref_description="SGN-E269527 [cLEM-2-E13]">
      <seq>ccgtgcagcagtttggtccattaaaaaaccgaaataaaaaatcgaatcgaattaataaaaatcaaaccgaaatatttcgattcggtattcgatacgcaatttacaaaaaccgaaaaccgaaaaaaccgaaaaaaacccgaaccgaaccgaaataccgaatgcccaccactatattaaatttgaagtaattatatacccatctcgattttaatttaatataaacaaataataaacccttctccaagataataaatcccttcttctccaaagttccagtaccttctagtttctacaaaatctcttcaataaattcttcttcttccctaaacaaaacaccgaaaaatctaagtaagaaatcaaaaatggcgaaagagggacctaattgggatggtttattgaaatggagtctatctcatgctgatggtaccaaacctcctcctcgcaatttgagtgaggaggacaggaggtggttcatggaggctatgcaagctcaaactgttgatgtgattaagagaatgaaggagattacactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="79338" stop="81125"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79638" g_stop="80088" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="451" r_length="451" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80089" i_stop="80743" i_length="655">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80744" g_stop="80825" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="533" r_length="82" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E269527" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E269527" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79638" e_stop="80088"/>
          <exon e_start="80744" e_stop="80825"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTGCAGCAGTTTGGTCCATTAAAAAACCGAAATAAAAAATCGAATCGAATTAATAAAAATCAAACCGAAATATTTCGATTCGGTATTCGATACGCAATTTACAAAAACCGAAAACCGAAAAAACCGAAAAAAACCCGAACCGAACCGAAATACCGAATGCCCACCACTATATTAAATTTGAAGTAATTATATACCCATCTCGATTTTAATTTAATATAAACAAATAATAAACCCTTCTCCAAGATAATAAATCCCTTCTTCTCCAAAGTTCCAGTACCTTCTAGTTTCTACAAAATCTCTTCAATAAATTCTTCTTCTTCCCTAAACAAAACACCGAAAAATCTAAGTAAGAAATCAAAAATGGCGAAAGAGGGACCTAATTGGGATGGTTTATTGAAATGGAGTCTATCTCATGCTGATGGTACCAAACCTCCTCCTCGCAATTTGAGGTAACCAAATTCGAATCAATGAATTTCTTTGTTTTATAGCAAAAGATTGAAACTTTTGATATGGGTTTTGTTGGTTGAATAGTAATTTCAGTTTAGATAGTTTGTAGGTTTGAGTTGTGTGCTGTGCACACTAAGCCTCTTGTGTTTAAGTGGAGAGGGTGGGCTTATTGTTCTTGTTTTCAAAGGTTGTAGTGTAAAAGAGGGGTTCTGTAGGTGATGATGACAAGCTAAAAATAGTTGAAACATGAGTGGAATTGATAAAAGAGGATTTATGTAGCAGGCAGATTGGTTTTGGGTTGATTGGGGTAGTATTTGAAAAAAGTTTCCATTTTATATGTTCATTGATTGGTGTAGGGATAGATCTTTTTGTAGTATGCTTTGTCATGGTTTCTTTTAGCATTTTGTCTCGACTTCTTTACTTCAGTTGTTTTCATTTTTCGAATTGTGTTGTAATGATTTTACTTGAGCTGAGGGTCTATGAGAAACAACATCATTATCCTTCCCAAACCCCACTTATGGAATTACACTTGGTATCTTATTCTTGTTGATTGATTAATTGGTGTAGTAATTTGAATGATTCTATTTTTATTTGTTCTTTTCTGTGGAAGTTGGTCTTATATTGAAGTTATTGGTTGATTGTGTTACTGTGGGTCAGTGAGGAGGACAGGAGGTGGTTCATGGAGGCTATGCAAGCTCAAACTGTTGATGTGATTAAGAGAATGAAGGAGATTACACTT</genome_strand>
        <mrna_strand>CCGTGCAGCAGTTTGGTCCATTAAAAAACCGAAATAAAAAATCGAATCGAATTAATAAAAATCAAACCGAAATATTTCGATTCGGTATTCGATACGCAATTTACAAAAACCGAAAACCGAAAAAACCGAAAAAAACCCGAACCGAACCGAAATACCGAATGCCCACCACTATATTAAATTTGAAGTAATTATATACCCATCTCGATTTTAATTTAATATAAACAAATAATAAACCCTTCTCCAAGATAATAAATCCCTTCTTCTCCAAAGTTCCAGTACCTTCTAGTTTCTACAAAATCTCTTCAATAAATTCTTCTTCTTCCCTAAACAAAACACCGAAAAATCTAAGTAAGAAATCAAAAATGGCGAAAGAGGGACCTAATTGGGATGGTTTATTGAAATGGAGTCTATCTCATGCTGATGGTACCAAACCTCCTCCTCGCAATTTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGAGGACAGGAGGTGGTTCATGGAGGCTATGCAAGCTCAAACTGTTGATGTGATTAAGAGAATGAAGGAGATTACACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E250948" ref_strand="+" ref_description="SGN-E250948 [cLEG-13-F7]">
      <seq>aaaatcaaaccgaaatatttcgattcggtattcgatacgcaatttacaaaaaccgaaaaccgaaaaaaccgaaaaaaacccgaaccgaaccgaaataccgaatgcccaccactatattaaatttgaagtaattatatacccatctcgattttaatttaatataaacaaataataaacccttctccaagataataaatcccttcttctccaaagttccagtaccttctagtttctaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="79395" stop="80231"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79695" g_stop="79931" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E250948" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>237</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E250948" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79695" e_stop="79931"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCAAACCGAAATATTTCGATTCGGTATTCGATACGCAATTTACAAAAACCGAAAACCGAAAAAACCGAAAAAAACCCGAACCGAACCGAAATACCGAATGCCCACCACTATATTAAATTTGAAGTAATTATATACCCATCTCGATTTTAATTTAATATAAACAAATAATAAACCCTTCTCCAAGATAATAAATCCCTTCTTCTCCAAAGTTCCAGTACCTTCTAGTTTCTACA</genome_strand>
        <mrna_strand>AAAATCAAACCGAAATATTTCGATTCGGTATTCGATACGCAATTTACAAAAACCGAAAACCGAAAAAACCGAAAAAAACCCGAACCGAACCGAAATACCGAATGCCCACCACTATATTAAATTTGAAGTAATTATATACCCATCTCGATTTTAATTTAATATAAACAAATAATAAACCCTTCTCCAAGATAATAAATCCCTTCTTCTCCAAAGTTCCAGTACCTTCTAGTTTCTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E262911" ref_strand="+" ref_description="SGN-E262911 [cLEG-59-P13]">
      <seq>aacccgaaccgaaccgaaataccgaatgcccaccactatattaaatttgaagtaattatatacccatctcgattttaatttaatataaacaaataataaacccttctccaagataataaatcccttcttctccaaagttccagtaccttctagtttctacaaaatctcttcaataaattcttcttcttccctaaacaaaacaccgaaaaatctaagtaagaaatcaaaaatggcgaaagagggacctaattgggatggtttattgaaatggagtctatctcatgctgatggtaccaaacctcctcctcgcaatttgagtgaggaggacaggaggtggttcatggaggctatgcaagctcaaactgttgatgtgattaagagaatgaaggagattacacttgtcatgcaaacaccagagcaggttttggaatcacagggggtgacttcccaagatattgaagatatgctggatgagctacaagaacatgtcgaatcaattgatatggctaatgatctgaattcaattggtggattggtgcctcttcttggttacttaaagaactcccatgcaaacattagagccaaagcggcagaagtcgtaagtacaattgttcagaacaacccgaggagccaacaactggtaatggaagctaatggcctagaaccccttctgtcaattttacctcagatcctgatgttactgcccgcactaaagctcttgggtgcatttcatctttaattaggcacaacaagcctgccattgctgcatttcgtctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="79471" stop="83798"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79771" g_stop="80088" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="318" r_length="318" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80089" i_stop="80743" i_length="655">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80744" g_stop="80886" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="461" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80887" i_stop="80975" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80976" g_stop="81026" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="512" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81027" i_stop="83112" i_length="2086">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83113" g_stop="83334" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="733" r_length="221" r_score="0.977"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83335" i_stop="83454" i_length="120">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="83455" g_stop="83498" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="734" r_stop="777" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E262911" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>778</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262911" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79771" e_stop="80088"/>
          <exon e_start="80744" e_stop="80886"/>
          <exon e_start="80976" e_stop="81026"/>
          <exon e_start="83113" e_stop="83334"/>
          <exon e_start="83455" e_stop="83498"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCCGAACCGAACCGAAATACCGAATGCCCACCACTATATTAAATTTGAAGTAATTATATACCCATCTCGATTTTAATTTAATATAAACAAATAATAAACCCTTCTCCAAGATAATAAATCCCTTCTTCTCCAAAGTTCCAGTACCTTCTAGTTTCTACAAAATCTCTTCAATAAATTCTTCTTCTTCCCTAAACAAAACACCGAAAAATCTAAGTAAGAAATCAAAAATGGCGAAAGAGGGACCTAATTGGGATGGTTTATTGAAATGGAGTCTATCTCATGCTGATGGTACCAAACCTCCTCCTCGCAATTTGAGGTAACCAAATTCGAATCAATGAATTTCTTTGTTTTATAGCAAAAGATTGAAACTTTTGATATGGGTTTTGTTGGTTGAATAGTAATTTCAGTTTAGATAGTTTGTAGGTTTGAGTTGTGTGCTGTGCACACTAAGCCTCTTGTGTTTAAGTGGAGAGGGTGGGCTTATTGTTCTTGTTTTCAAAGGTTGTAGTGTAAAAGAGGGGTTCTGTAGGTGATGATGACAAGCTAAAAATAGTTGAAACATGAGTGGAATTGATAAAAGAGGATTTATGTAGCAGGCAGATTGGTTTTGGGTTGATTGGGGTAGTATTTGAAAAAAGTTTCCATTTTATATGTTCATTGATTGGTGTAGGGATAGATCTTTTTGTAGTATGCTTTGTCATGGTTTCTTTTAGCATTTTGTCTCGACTTCTTTACTTCAGTTGTTTTCATTTTTCGAATTGTGTTGTAATGATTTTACTTGAGCTGAGGGTCTATGAGAAACAACATCATTATCCTTCCCAAACCCCACTTATGGAATTACACTTGGTATCTTATTCTTGTTGATTGATTAATTGGTGTAGTAATTTGAATGATTCTATTTTTATTTGTTCTTTTCTGTGGAAGTTGGTCTTATATTGAAGTTATTGGTTGATTGTGTTACTGTGGGTCAGTGAGGAGGACAGGAGGTGGTTCATGGAGGCTATGCAAGCTCAAACTGTTGATGTGATTAAGAGAATGAAGGAGATTACACTTGTCATGCAAACACCAGAGCAGGTTTTGGAATCACAGGGGGTGACTTCCCAAGATATTGAAGGTACTTGTTTAGTTTTTCTTGATAATGTGTAATCATATTTTATGAATTTTACTCGTTTTGACTTTTTTGCTGGCCTTGTGATTTCACAGATATGCTGGATGAGCTACAAGAACATGTCGAATCAATTGATATGGCTAATGGTGAGTTCTTGGTGTAATTTAGTTATTCAGAAATGTGTGTGTATCATGATTTGGTAGTTACGCATATTACATAATTCTTGCTAACCAGCTAATTTGGAATTGAGGTCTTGTTGTGGAAGCTCTATCTGTTAGAGTGTCCCACATTAGTTGAGGGAATAGATTGTTGTCTCCTTATAGTATTGGACAATTCTTGTCACATGAGCTAGCTTTTGTTGTTGATTTAGGCCCAATTCTTGTCTCCATTTCTTAATATGGAGTTAGAGCTGCATCAGTATTTTCTTAGTTTACTGAATACTAGGCCCAATGTTAAATTGTTCATGCTCTGGTTATCTACTCTCGGTTATCAGAGGAGACTTAACATCTCACATTGTTTGAAAGAATGACCCCTTGTCTTTTATATATTTTTTGCTCAATCCTCACCTCTTAAGCTAGCTTTTGGGGTCCAGTGCCCAAGGCCAATTCACTTGATAATATCATGTAGGTTTAATTGAAGTTTCCAATGTTGCACGTCATGTGCTTGAACTTCGCCACATTCAAAATCACTGTATTTAAGTGGACGAGAGTAGAGGCGCGTACCAATTATTGCCTAGTTATGAGCCGGCCCTCGGAATTTCTCGGCAATTAAAACAAAATTGTCCTGATCAAAGAGTAGTTTCATTGGTTATATGAGTTCATTCTTTTGCTGTTCTTTGACAAAGGTAGTCTGTAGTTCATATCATTGTGTTCATCTAGGAGCCAAGATTGTAATTATTTCCTGTTTTGTGAAGTGTGACCTGACAAGCATCCTGTATTTCTGTGAGTAGATACTGACCAGCATGCATGTTGGATACTCCATAAATAGTGCATATTTGAAGAATCCGACACGGGTGCAACAACATTTTTGGAGAGTTTGAGCAACATAGTTCTGCAATGGTTTTTTCTTAGACTGAAGAATTTTTGTTCTGTCTCAAAATTGCAGTAATGATATTGCTCTCATCTTTTACCTATGATAAATTCAACGACGTACATCCACTCATTTCAAGGAAAACCATGTGAGAATAGGTGCTCAGTAAAGTTATGCAACTTCATGATAATCTCTATTGAAGATGTTTGTGCTCCATAATCACATATTCAAACAAATAAAAACCTCAGTCACACATATCCTCTTTGATGTTGCTCCTGATTTCCAGATGTTTATCTCTGGTTCCTAGTTATTGTAATTGGTTGTGTTCAGATAATAATTACTTGTTGAAAAACAAAAAATGAAGCATATTAGACCAAGCTGACACTATTAAGTATTCCATAATATACATCACTCTGATCCTCCATCATGCCTTTTTCCGTCATAAGCTTAATTCTGATAATTTATGTCAGCAGTCACAATTTTCTTTTAATATGTATTTCGTATGAATGTACTCTTGGTGTTATTGTGATTTGTGCTCTACATTATGAGGTCCTTGAGACTTCTAGTCAACCTAGAAGTAAAGAAAGAAAGGTCTACCAAGTAGAAAAGAAATAAATGAAGAGGTTTCTCGTTTACTTTGGTATGAATCAGTTAAGGGGCTTTCATGAGCATGAAGAGAATGGGTATATCCTACAGTTTGAGATGTTTTTACTCTGTTGCCTCTTTAAGAGCTTGGTAACTGGTTGCTTCCTTGAATTGAATGGAACACTTCAGAACAAGGCCTCCAAGAGTATCTAAGAGTATGGAACAAAGTAAAAAACATGTAATCTCTCATCCTTTACAGCATTAATGTTAAACTGGAATGCCTATGACTAAGCTATAACGGATATCAAGAGCCACTCGAACCTGGTAGGCCGTATTCCATGGTTACTGCTGGAAACTAGAAAAAGAGAAGAGGACCAGAAAGACCTGGGGGAAGTGGTCTATACTTTGTTAGTGTTACTGGCTCATAGGTAATCTTTACTATCAGCACTTGGACATTCCGCTCTTTGTGTCCTTTCCCTCCTCATTCCTTGGGGATTTCGTTCTCTTTACTTGCTTTGTTGTCATTTTCTGTTTGAGCTTTCAATATTTAATTATGTGGTATTCCCATTATTAAAAGTTTTAGTCTTATGCTCGATTTCTTTTATTGTTATTCGGCAGATCTGAATTCAATTGGTGGATTGGTGCCTCTTCTTGGTTACTTAAAGAACTCCCATGCAAACATTAGAGCCAAAGCGGCAGAAGTCGTAAGTACAATTGTTCAGAACAACCCGAGGAGCCAACAACTGGTAATGGAAGCTAATGGCCTAGAACCCCTTCTGTCAAATTTTACCTCAGATCCTGATGTTACTGCCCGCACTAAAGCTCTTGGTGCAATTTCATGTGAGTACTTTCCCCGTTATGATTTATTAGTTAAGTGTGCCCTTTAAATTTTGGTGTCATGTCATCTGTGTTTTCCAGTAGCGTTGATCAACTAGTTTTTTTATTTTTCCTTTATTCCAGCTTTAATTAGGCACAACAAGCCTGCCATTGCTGCATTTCGTCTT</genome_strand>
        <mrna_strand>AACCCGAACCGAACCGAAATACCGAATGCCCACCACTATATTAAATTTGAAGTAATTATATACCCATCTCGATTTTAATTTAATATAAACAAATAATAAACCCTTCTCCAAGATAATAAATCCCTTCTTCTCCAAAGTTCCAGTACCTTCTAGTTTCTACAAAATCTCTTCAATAAATTCTTCTTCTTCCCTAAACAAAACACCGAAAAATCTAAGTAAGAAATCAAAAATGGCGAAAGAGGGACCTAATTGGGATGGTTTATTGAAATGGAGTCTATCTCATGCTGATGGTACCAAACCTCCTCCTCGCAATTTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGAGGACAGGAGGTGGTTCATGGAGGCTATGCAAGCTCAAACTGTTGATGTGATTAAGAGAATGAAGGAGATTACACTTGTCATGCAAACACCAGAGCAGGTTTTGGAATCACAGGGGGTGACTTCCCAAGATATTGAAG.........................................................................................ATATGCTGGATGAGCTACAAGAACATGTCGAATCAATTGATATGGCTAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGAATTCAATTGGTGGATTGGTGCCTCTTCTTGGTTACTTAAAGAACTCCCATGCAAACATTAGAGCCAAAGCGGCAGAAGTCGTAAGTACAATTGTTCAGAACAACCCGAGGAGCCAACAACTGGTAATGGAAGCTAATGGCCTAGAACCCCTTCTGTC-AATTTTACCTCAGATCCTGATGTTACTGCCCGCACTAAAGCTCTTGGGTGCATTTCAT........................................................................................................................CTTTAATTAGGCACAACAAGCCTGCCATTGCTGCATTTCGTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E258761" ref_strand="+" ref_description="SGN-E258761 [cLEG-50-C18]">
      <seq>aacccgaaccgaaccgaaataccgaatgcccaccactatattaaatttgaagtaattatatacccatctcgattttaatttaatataaacaaataataaacccttctccaagataataaatcccttcttctccaaagttccagtaccttctagtttctacaaaatctcttcaataaattcttcttcttccctaaacaaaacaccgaaaaatctaagtaagaaatcaaaaatggcgaaagagggacctaattgggatggtttattgaaatggagtctatctcatgctgatggtaccaaacctcctcctcgcaatttgagtgaggaggacaggaggtggttcatggaggctatgcaagctcaaactgttgatgtgattaagagaatgaaggagattacacttgtcatgcaaacaccagagcaggttttggaatcacagggggtgacttcccaagatattgaagatatgctggatgagctacaagaacatgtcgaatcaattgatatggctaatgatctgaattcaattggtggattggtgcctcttcttggttacttaaagaactccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="79471" stop="83467"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79771" g_stop="80088" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="318" r_length="318" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80089" i_stop="80743" i_length="655">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80744" g_stop="80886" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="461" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80887" i_stop="80975" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80976" g_stop="81026" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="512" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81027" i_stop="83112" i_length="2086">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83113" g_stop="83167" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="567" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E258761" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258761" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79771" e_stop="80088"/>
          <exon e_start="80744" e_stop="80886"/>
          <exon e_start="80976" e_stop="81026"/>
          <exon e_start="83113" e_stop="83167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCCGAACCGAACCGAAATACCGAATGCCCACCACTATATTAAATTTGAAGTAATTATATACCCATCTCGATTTTAATTTAATATAAACAAATAATAAACCCTTCTCCAAGATAATAAATCCCTTCTTCTCCAAAGTTCCAGTACCTTCTAGTTTCTACAAAATCTCTTCAATAAATTCTTCTTCTTCCCTAAACAAAACACCGAAAAATCTAAGTAAGAAATCAAAAATGGCGAAAGAGGGACCTAATTGGGATGGTTTATTGAAATGGAGTCTATCTCATGCTGATGGTACCAAACCTCCTCCTCGCAATTTGAGGTAACCAAATTCGAATCAATGAATTTCTTTGTTTTATAGCAAAAGATTGAAACTTTTGATATGGGTTTTGTTGGTTGAATAGTAATTTCAGTTTAGATAGTTTGTAGGTTTGAGTTGTGTGCTGTGCACACTAAGCCTCTTGTGTTTAAGTGGAGAGGGTGGGCTTATTGTTCTTGTTTTCAAAGGTTGTAGTGTAAAAGAGGGGTTCTGTAGGTGATGATGACAAGCTAAAAATAGTTGAAACATGAGTGGAATTGATAAAAGAGGATTTATGTAGCAGGCAGATTGGTTTTGGGTTGATTGGGGTAGTATTTGAAAAAAGTTTCCATTTTATATGTTCATTGATTGGTGTAGGGATAGATCTTTTTGTAGTATGCTTTGTCATGGTTTCTTTTAGCATTTTGTCTCGACTTCTTTACTTCAGTTGTTTTCATTTTTCGAATTGTGTTGTAATGATTTTACTTGAGCTGAGGGTCTATGAGAAACAACATCATTATCCTTCCCAAACCCCACTTATGGAATTACACTTGGTATCTTATTCTTGTTGATTGATTAATTGGTGTAGTAATTTGAATGATTCTATTTTTATTTGTTCTTTTCTGTGGAAGTTGGTCTTATATTGAAGTTATTGGTTGATTGTGTTACTGTGGGTCAGTGAGGAGGACAGGAGGTGGTTCATGGAGGCTATGCAAGCTCAAACTGTTGATGTGATTAAGAGAATGAAGGAGATTACACTTGTCATGCAAACACCAGAGCAGGTTTTGGAATCACAGGGGGTGACTTCCCAAGATATTGAAGGTACTTGTTTAGTTTTTCTTGATAATGTGTAATCATATTTTATGAATTTTACTCGTTTTGACTTTTTTGCTGGCCTTGTGATTTCACAGATATGCTGGATGAGCTACAAGAACATGTCGAATCAATTGATATGGCTAATGGTGAGTTCTTGGTGTAATTTAGTTATTCAGAAATGTGTGTGTATCATGATTTGGTAGTTACGCATATTACATAATTCTTGCTAACCAGCTAATTTGGAATTGAGGTCTTGTTGTGGAAGCTCTATCTGTTAGAGTGTCCCACATTAGTTGAGGGAATAGATTGTTGTCTCCTTATAGTATTGGACAATTCTTGTCACATGAGCTAGCTTTTGTTGTTGATTTAGGCCCAATTCTTGTCTCCATTTCTTAATATGGAGTTAGAGCTGCATCAGTATTTTCTTAGTTTACTGAATACTAGGCCCAATGTTAAATTGTTCATGCTCTGGTTATCTACTCTCGGTTATCAGAGGAGACTTAACATCTCACATTGTTTGAAAGAATGACCCCTTGTCTTTTATATATTTTTTGCTCAATCCTCACCTCTTAAGCTAGCTTTTGGGGTCCAGTGCCCAAGGCCAATTCACTTGATAATATCATGTAGGTTTAATTGAAGTTTCCAATGTTGCACGTCATGTGCTTGAACTTCGCCACATTCAAAATCACTGTATTTAAGTGGACGAGAGTAGAGGCGCGTACCAATTATTGCCTAGTTATGAGCCGGCCCTCGGAATTTCTCGGCAATTAAAACAAAATTGTCCTGATCAAAGAGTAGTTTCATTGGTTATATGAGTTCATTCTTTTGCTGTTCTTTGACAAAGGTAGTCTGTAGTTCATATCATTGTGTTCATCTAGGAGCCAAGATTGTAATTATTTCCTGTTTTGTGAAGTGTGACCTGACAAGCATCCTGTATTTCTGTGAGTAGATACTGACCAGCATGCATGTTGGATACTCCATAAATAGTGCATATTTGAAGAATCCGACACGGGTGCAACAACATTTTTGGAGAGTTTGAGCAACATAGTTCTGCAATGGTTTTTTCTTAGACTGAAGAATTTTTGTTCTGTCTCAAAATTGCAGTAATGATATTGCTCTCATCTTTTACCTATGATAAATTCAACGACGTACATCCACTCATTTCAAGGAAAACCATGTGAGAATAGGTGCTCAGTAAAGTTATGCAACTTCATGATAATCTCTATTGAAGATGTTTGTGCTCCATAATCACATATTCAAACAAATAAAAACCTCAGTCACACATATCCTCTTTGATGTTGCTCCTGATTTCCAGATGTTTATCTCTGGTTCCTAGTTATTGTAATTGGTTGTGTTCAGATAATAATTACTTGTTGAAAAACAAAAAATGAAGCATATTAGACCAAGCTGACACTATTAAGTATTCCATAATATACATCACTCTGATCCTCCATCATGCCTTTTTCCGTCATAAGCTTAATTCTGATAATTTATGTCAGCAGTCACAATTTTCTTTTAATATGTATTTCGTATGAATGTACTCTTGGTGTTATTGTGATTTGTGCTCTACATTATGAGGTCCTTGAGACTTCTAGTCAACCTAGAAGTAAAGAAAGAAAGGTCTACCAAGTAGAAAAGAAATAAATGAAGAGGTTTCTCGTTTACTTTGGTATGAATCAGTTAAGGGGCTTTCATGAGCATGAAGAGAATGGGTATATCCTACAGTTTGAGATGTTTTTACTCTGTTGCCTCTTTAAGAGCTTGGTAACTGGTTGCTTCCTTGAATTGAATGGAACACTTCAGAACAAGGCCTCCAAGAGTATCTAAGAGTATGGAACAAAGTAAAAAACATGTAATCTCTCATCCTTTACAGCATTAATGTTAAACTGGAATGCCTATGACTAAGCTATAACGGATATCAAGAGCCACTCGAACCTGGTAGGCCGTATTCCATGGTTACTGCTGGAAACTAGAAAAAGAGAAGAGGACCAGAAAGACCTGGGGGAAGTGGTCTATACTTTGTTAGTGTTACTGGCTCATAGGTAATCTTTACTATCAGCACTTGGACATTCCGCTCTTTGTGTCCTTTCCCTCCTCATTCCTTGGGGATTTCGTTCTCTTTACTTGCTTTGTTGTCATTTTCTGTTTGAGCTTTCAATATTTAATTATGTGGTATTCCCATTATTAAAAGTTTTAGTCTTATGCTCGATTTCTTTTATTGTTATTCGGCAGATCTGAATTCAATTGGTGGATTGGTGCCTCTTCTTGGTTACTTAAAGAACTCCCA</genome_strand>
        <mrna_strand>AACCCGAACCGAACCGAAATACCGAATGCCCACCACTATATTAAATTTGAAGTAATTATATACCCATCTCGATTTTAATTTAATATAAACAAATAATAAACCCTTCTCCAAGATAATAAATCCCTTCTTCTCCAAAGTTCCAGTACCTTCTAGTTTCTACAAAATCTCTTCAATAAATTCTTCTTCTTCCCTAAACAAAACACCGAAAAATCTAAGTAAGAAATCAAAAATGGCGAAAGAGGGACCTAATTGGGATGGTTTATTGAAATGGAGTCTATCTCATGCTGATGGTACCAAACCTCCTCCTCGCAATTTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGAGGACAGGAGGTGGTTCATGGAGGCTATGCAAGCTCAAACTGTTGATGTGATTAAGAGAATGAAGGAGATTACACTTGTCATGCAAACACCAGAGCAGGTTTTGGAATCACAGGGGGTGACTTCCCAAGATATTGAAG.........................................................................................ATATGCTGGATGAGCTACAAGAACATGTCGAATCAATTGATATGGCTAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGAATTCAATTGGTGGATTGGTGCCTCTTCTTGGTTACTTAAAGAACTCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E699106" ref_strand="+" ref_description="SGN-E699106 [FA08CG07]">
      <seq>cgataaatcccttcttctccaaagttccagtaccttctagtttctacaaaatctcttcaataaattcttcttcttccctaaacaaaacaccgaaaaatctaagtaagaaatcaaaaatggcgaaagagggacctaattgggatggtttattgaaatggagtctatctcatgctgatggtaccaaacctcctcctcgcaatttgagtgaggaggacaggaggtggttcatggaggctatgcaagctcaaactgttgatgtgattaagagaatgaaggagattacacttgtcatgcaaacaccagagcaggttttggaatcacagggggtgacttcccaagatattgaagatatgctggatgagctacaagaacatgtcgaatcaattgatatggctaatgatctgaattcaattggtggattggtgcctcttcttggttacttaaagaactcccatgcaaacattagagccaaagcggcagaagtcgtaagtacaattgttcagaacaacccgaggagccaacaacctggtaatggaagctaatggcctagaaccccttctgtcaaattttacctcagatcctgatgttactgcccgcactaaagctcttggtgcaatttcatctttaattaggcacaacaagcctgccattgctgcctttcctccttgcaaatggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="79586" stop="83807"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79884" g_stop="80088" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80089" i_stop="80743" i_length="655">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80744" g_stop="80886" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="348" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80887" i_stop="80975" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80976" g_stop="81026" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="399" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81027" i_stop="83112" i_length="2086">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83113" g_stop="83334" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="622" r_length="223" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83335" i_stop="83454" i_length="120">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="83455" g_stop="83507" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="623" r_stop="676" r_length="54" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E699106" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699106" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79884" e_stop="80088"/>
          <exon e_start="80744" e_stop="80886"/>
          <exon e_start="80976" e_stop="81026"/>
          <exon e_start="83113" e_stop="83334"/>
          <exon e_start="83455" e_stop="83507"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATAAATCCCTTCTTCTCCAAAGTTCCAGTACCTTCTAGTTTCTACAAAATCTCTTCAATAAATTCTTCTTCTTCCCTAAACAAAACACCGAAAAATCTAAGTAAGAAATCAAAAATGGCGAAAGAGGGACCTAATTGGGATGGTTTATTGAAATGGAGTCTATCTCATGCTGATGGTACCAAACCTCCTCCTCGCAATTTGAGGTAACCAAATTCGAATCAATGAATTTCTTTGTTTTATAGCAAAAGATTGAAACTTTTGATATGGGTTTTGTTGGTTGAATAGTAATTTCAGTTTAGATAGTTTGTAGGTTTGAGTTGTGTGCTGTGCACACTAAGCCTCTTGTGTTTAAGTGGAGAGGGTGGGCTTATTGTTCTTGTTTTCAAAGGTTGTAGTGTAAAAGAGGGGTTCTGTAGGTGATGATGACAAGCTAAAAATAGTTGAAACATGAGTGGAATTGATAAAAGAGGATTTATGTAGCAGGCAGATTGGTTTTGGGTTGATTGGGGTAGTATTTGAAAAAAGTTTCCATTTTATATGTTCATTGATTGGTGTAGGGATAGATCTTTTTGTAGTATGCTTTGTCATGGTTTCTTTTAGCATTTTGTCTCGACTTCTTTACTTCAGTTGTTTTCATTTTTCGAATTGTGTTGTAATGATTTTACTTGAGCTGAGGGTCTATGAGAAACAACATCATTATCCTTCCCAAACCCCACTTATGGAATTACACTTGGTATCTTATTCTTGTTGATTGATTAATTGGTGTAGTAATTTGAATGATTCTATTTTTATTTGTTCTTTTCTGTGGAAGTTGGTCTTATATTGAAGTTATTGGTTGATTGTGTTACTGTGGGTCAGTGAGGAGGACAGGAGGTGGTTCATGGAGGCTATGCAAGCTCAAACTGTTGATGTGATTAAGAGAATGAAGGAGATTACACTTGTCATGCAAACACCAGAGCAGGTTTTGGAATCACAGGGGGTGACTTCCCAAGATATTGAAGGTACTTGTTTAGTTTTTCTTGATAATGTGTAATCATATTTTATGAATTTTACTCGTTTTGACTTTTTTGCTGGCCTTGTGATTTCACAGATATGCTGGATGAGCTACAAGAACATGTCGAATCAATTGATATGGCTAATGGTGAGTTCTTGGTGTAATTTAGTTATTCAGAAATGTGTGTGTATCATGATTTGGTAGTTACGCATATTACATAATTCTTGCTAACCAGCTAATTTGGAATTGAGGTCTTGTTGTGGAAGCTCTATCTGTTAGAGTGTCCCACATTAGTTGAGGGAATAGATTGTTGTCTCCTTATAGTATTGGACAATTCTTGTCACATGAGCTAGCTTTTGTTGTTGATTTAGGCCCAATTCTTGTCTCCATTTCTTAATATGGAGTTAGAGCTGCATCAGTATTTTCTTAGTTTACTGAATACTAGGCCCAATGTTAAATTGTTCATGCTCTGGTTATCTACTCTCGGTTATCAGAGGAGACTTAACATCTCACATTGTTTGAAAGAATGACCCCTTGTCTTTTATATATTTTTTGCTCAATCCTCACCTCTTAAGCTAGCTTTTGGGGTCCAGTGCCCAAGGCCAATTCACTTGATAATATCATGTAGGTTTAATTGAAGTTTCCAATGTTGCACGTCATGTGCTTGAACTTCGCCACATTCAAAATCACTGTATTTAAGTGGACGAGAGTAGAGGCGCGTACCAATTATTGCCTAGTTATGAGCCGGCCCTCGGAATTTCTCGGCAATTAAAACAAAATTGTCCTGATCAAAGAGTAGTTTCATTGGTTATATGAGTTCATTCTTTTGCTGTTCTTTGACAAAGGTAGTCTGTAGTTCATATCATTGTGTTCATCTAGGAGCCAAGATTGTAATTATTTCCTGTTTTGTGAAGTGTGACCTGACAAGCATCCTGTATTTCTGTGAGTAGATACTGACCAGCATGCATGTTGGATACTCCATAAATAGTGCATATTTGAAGAATCCGACACGGGTGCAACAACATTTTTGGAGAGTTTGAGCAACATAGTTCTGCAATGGTTTTTTCTTAGACTGAAGAATTTTTGTTCTGTCTCAAAATTGCAGTAATGATATTGCTCTCATCTTTTACCTATGATAAATTCAACGACGTACATCCACTCATTTCAAGGAAAACCATGTGAGAATAGGTGCTCAGTAAAGTTATGCAACTTCATGATAATCTCTATTGAAGATGTTTGTGCTCCATAATCACATATTCAAACAAATAAAAACCTCAGTCACACATATCCTCTTTGATGTTGCTCCTGATTTCCAGATGTTTATCTCTGGTTCCTAGTTATTGTAATTGGTTGTGTTCAGATAATAATTACTTGTTGAAAAACAAAAAATGAAGCATATTAGACCAAGCTGACACTATTAAGTATTCCATAATATACATCACTCTGATCCTCCATCATGCCTTTTTCCGTCATAAGCTTAATTCTGATAATTTATGTCAGCAGTCACAATTTTCTTTTAATATGTATTTCGTATGAATGTACTCTTGGTGTTATTGTGATTTGTGCTCTACATTATGAGGTCCTTGAGACTTCTAGTCAACCTAGAAGTAAAGAAAGAAAGGTCTACCAAGTAGAAAAGAAATAAATGAAGAGGTTTCTCGTTTACTTTGGTATGAATCAGTTAAGGGGCTTTCATGAGCATGAAGAGAATGGGTATATCCTACAGTTTGAGATGTTTTTACTCTGTTGCCTCTTTAAGAGCTTGGTAACTGGTTGCTTCCTTGAATTGAATGGAACACTTCAGAACAAGGCCTCCAAGAGTATCTAAGAGTATGGAACAAAGTAAAAAACATGTAATCTCTCATCCTTTACAGCATTAATGTTAAACTGGAATGCCTATGACTAAGCTATAACGGATATCAAGAGCCACTCGAACCTGGTAGGCCGTATTCCATGGTTACTGCTGGAAACTAGAAAAAGAGAAGAGGACCAGAAAGACCTGGGGGAAGTGGTCTATACTTTGTTAGTGTTACTGGCTCATAGGTAATCTTTACTATCAGCACTTGGACATTCCGCTCTTTGTGTCCTTTCCCTCCTCATTCCTTGGGGATTTCGTTCTCTTTACTTGCTTTGTTGTCATTTTCTGTTTGAGCTTTCAATATTTAATTATGTGGTATTCCCATTATTAAAAGTTTTAGTCTTATGCTCGATTTCTTTTATTGTTATTCGGCAGATCTGAATTCAATTGGTGGATTGGTGCCTCTTCTTGGTTACTTAAAGAACTCCCATGCAAACATTAGAGCCAAAGCGGCAGAAGTCGTAAGTACAATTGTTCAGAACAACCCGAGGAGCCAACAA-CTGGTAATGGAAGCTAATGGCCTAGAACCCCTTCTGTCAAATTTTACCTCAGATCCTGATGTTACTGCCCGCACTAAAGCTCTTGGTGCAATTTCATGTGAGTACTTTCCCCGTTATGATTTATTAGTTAAGTGTGCCCTTTAAATTTTGGTGTCATGTCATCTGTGTTTTCCAGTAGCGTTGATCAACTAGTTTTTTTATTTTTCCTTTATTCCAGCTTTAATTAGGCACAACAAGCCTGCCATTGCTGCATTTCGT-CTTGCAAATGGT</genome_strand>
        <mrna_strand>CGATAAATCCCTTCTTCTCCAAAGTTCCAGTACCTTCTAGTTTCTACAAAATCTCTTCAATAAATTCTTCTTCTTCCCTAAACAAAACACCGAAAAATCTAAGTAAGAAATCAAAAATGGCGAAAGAGGGACCTAATTGGGATGGTTTATTGAAATGGAGTCTATCTCATGCTGATGGTACCAAACCTCCTCCTCGCAATTTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGAGGACAGGAGGTGGTTCATGGAGGCTATGCAAGCTCAAACTGTTGATGTGATTAAGAGAATGAAGGAGATTACACTTGTCATGCAAACACCAGAGCAGGTTTTGGAATCACAGGGGGTGACTTCCCAAGATATTGAAG.........................................................................................ATATGCTGGATGAGCTACAAGAACATGTCGAATCAATTGATATGGCTAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGAATTCAATTGGTGGATTGGTGCCTCTTCTTGGTTACTTAAAGAACTCCCATGCAAACATTAGAGCCAAAGCGGCAGAAGTCGTAAGTACAATTGTTCAGAACAACCCGAGGAGCCAACAACCTGGTAATGGAAGCTAATGGCCTAGAACCCCTTCTGTCAAATTTTACCTCAGATCCTGATGTTACTGCCCGCACTAAAGCTCTTGGTGCAATTTCAT........................................................................................................................CTTTAATTAGGCACAACAAGCCTGCCATTGCTGCCTTTCCTCCTTGCAAATGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E477977" ref_strand="+" ref_description="SGN-E477977 [cSTD-2-F21]">
      <seq>ctccaaagttccagtaccttctagtttctacaaaatcccttcaataaattcttcttcttctccaaaatcaaactccaaaaaatccaactacgaaatcaaaaatggcgaaagaaggacctaattgggatggtttattgaaatggagtctatctcatgctgatggtaccaatcctccttctcgcaatttgagtgaggaggacaggaggtggttcatggaggctatgcaagctcaaactgttgatgtaataaaaagaatgaaggagattacacttgtcatgcaaacaccagagcaggttttggaatcacagggagtgacttcccaagatattgaagatatgctggatgagctacaagaacatgttgaatcaattgacatggctaatgatctgaactcaattggtggattggtgcctcttcttggttacttaaagaactcccatgcaaacattagagccaaagcggcagaagttgtaagtacaattgttcagaacaacccgaggagccaacagctggtaatggaagctaatggcctagaacctcttctgtcaaatttcacctcagatcctgatgttactgcccgcacaaaagctcttggtgcaatttcatctttaatcaggcacaacaagcctgccattgctgcatttcgtcttgcaaatggttatgcagctttaagagatgctttgagttcggagaatgtgagatttcaaaggaaagcccttaacgtgatccattatttactgcaagagaatcattcagactgcaatgtagtgactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="79600" stop="84044"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79900" g_stop="80088" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="190" r_length="190" r_score="0.926"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80089" i_stop="80743" i_length="655">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80744" g_stop="80886" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="333" r_length="143" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80887" i_stop="80975" i_length="89">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80976" g_stop="81026" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="384" r_length="51" r_score="0.961"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81027" i_stop="83112" i_length="2086">
            <donor d_prob="0.985" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83113" g_stop="83334" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="606" r_length="222" r_score="0.973"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83335" i_stop="83454" i_length="120">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="83455" g_stop="83557" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="607" r_stop="709" r_length="103" r_score="0.951"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="83558" i_stop="83679" i_length="122">
            <donor d_prob="0.700" d_score="0.92"/>
            <acceptor a_prob="0.925" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="83680" g_stop="83744" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="710" r_stop="774" r_length="65" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E477977" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>773</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E477977" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79900" e_stop="80088"/>
          <exon e_start="80744" e_stop="80886"/>
          <exon e_start="80976" e_stop="81026"/>
          <exon e_start="83113" e_stop="83334"/>
          <exon e_start="83455" e_stop="83557"/>
          <exon e_start="83680" e_stop="83744"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCAAAGTTCCAGTACCTTCTAGTTTCTACAAAATCTCTTCAATAAATTCTTCTTCTTC-CCTAAACAAAACACCGAAAAATCTAAGTAAGAAATCAAAAATGGCGAAAGAGGGACCTAATTGGGATGGTTTATTGAAATGGAGTCTATCTCATGCTGATGGTACCAAACCTCCTCCTCGCAATTTGAGGTAACCAAATTCGAATCAATGAATTTCTTTGTTTTATAGCAAAAGATTGAAACTTTTGATATGGGTTTTGTTGGTTGAATAGTAATTTCAGTTTAGATAGTTTGTAGGTTTGAGTTGTGTGCTGTGCACACTAAGCCTCTTGTGTTTAAGTGGAGAGGGTGGGCTTATTGTTCTTGTTTTCAAAGGTTGTAGTGTAAAAGAGGGGTTCTGTAGGTGATGATGACAAGCTAAAAATAGTTGAAACATGAGTGGAATTGATAAAAGAGGATTTATGTAGCAGGCAGATTGGTTTTGGGTTGATTGGGGTAGTATTTGAAAAAAGTTTCCATTTTATATGTTCATTGATTGGTGTAGGGATAGATCTTTTTGTAGTATGCTTTGTCATGGTTTCTTTTAGCATTTTGTCTCGACTTCTTTACTTCAGTTGTTTTCATTTTTCGAATTGTGTTGTAATGATTTTACTTGAGCTGAGGGTCTATGAGAAACAACATCATTATCCTTCCCAAACCCCACTTATGGAATTACACTTGGTATCTTATTCTTGTTGATTGATTAATTGGTGTAGTAATTTGAATGATTCTATTTTTATTTGTTCTTTTCTGTGGAAGTTGGTCTTATATTGAAGTTATTGGTTGATTGTGTTACTGTGGGTCAGTGAGGAGGACAGGAGGTGGTTCATGGAGGCTATGCAAGCTCAAACTGTTGATGTGATTAAGAGAATGAAGGAGATTACACTTGTCATGCAAACACCAGAGCAGGTTTTGGAATCACAGGGGGTGACTTCCCAAGATATTGAAGGTACTTGTTTAGTTTTTCTTGATAATGTGTAATCATATTTTATGAATTTTACTCGTTTTGACTTTTTTGCTGGCCTTGTGATTTCACAGATATGCTGGATGAGCTACAAGAACATGTCGAATCAATTGATATGGCTAATGGTGAGTTCTTGGTGTAATTTAGTTATTCAGAAATGTGTGTGTATCATGATTTGGTAGTTACGCATATTACATAATTCTTGCTAACCAGCTAATTTGGAATTGAGGTCTTGTTGTGGAAGCTCTATCTGTTAGAGTGTCCCACATTAGTTGAGGGAATAGATTGTTGTCTCCTTATAGTATTGGACAATTCTTGTCACATGAGCTAGCTTTTGTTGTTGATTTAGGCCCAATTCTTGTCTCCATTTCTTAATATGGAGTTAGAGCTGCATCAGTATTTTCTTAGTTTACTGAATACTAGGCCCAATGTTAAATTGTTCATGCTCTGGTTATCTACTCTCGGTTATCAGAGGAGACTTAACATCTCACATTGTTTGAAAGAATGACCCCTTGTCTTTTATATATTTTTTGCTCAATCCTCACCTCTTAAGCTAGCTTTTGGGGTCCAGTGCCCAAGGCCAATTCACTTGATAATATCATGTAGGTTTAATTGAAGTTTCCAATGTTGCACGTCATGTGCTTGAACTTCGCCACATTCAAAATCACTGTATTTAAGTGGACGAGAGTAGAGGCGCGTACCAATTATTGCCTAGTTATGAGCCGGCCCTCGGAATTTCTCGGCAATTAAAACAAAATTGTCCTGATCAAAGAGTAGTTTCATTGGTTATATGAGTTCATTCTTTTGCTGTTCTTTGACAAAGGTAGTCTGTAGTTCATATCATTGTGTTCATCTAGGAGCCAAGATTGTAATTATTTCCTGTTTTGTGAAGTGTGACCTGACAAGCATCCTGTATTTCTGTGAGTAGATACTGACCAGCATGCATGTTGGATACTCCATAAATAGTGCATATTTGAAGAATCCGACACGGGTGCAACAACATTTTTGGAGAGTTTGAGCAACATAGTTCTGCAATGGTTTTTTCTTAGACTGAAGAATTTTTGTTCTGTCTCAAAATTGCAGTAATGATATTGCTCTCATCTTTTACCTATGATAAATTCAACGACGTACATCCACTCATTTCAAGGAAAACCATGTGAGAATAGGTGCTCAGTAAAGTTATGCAACTTCATGATAATCTCTATTGAAGATGTTTGTGCTCCATAATCACATATTCAAACAAATAAAAACCTCAGTCACACATATCCTCTTTGATGTTGCTCCTGATTTCCAGATGTTTATCTCTGGTTCCTAGTTATTGTAATTGGTTGTGTTCAGATAATAATTACTTGTTGAAAAACAAAAAATGAAGCATATTAGACCAAGCTGACACTATTAAGTATTCCATAATATACATCACTCTGATCCTCCATCATGCCTTTTTCCGTCATAAGCTTAATTCTGATAATTTATGTCAGCAGTCACAATTTTCTTTTAATATGTATTTCGTATGAATGTACTCTTGGTGTTATTGTGATTTGTGCTCTACATTATGAGGTCCTTGAGACTTCTAGTCAACCTAGAAGTAAAGAAAGAAAGGTCTACCAAGTAGAAAAGAAATAAATGAAGAGGTTTCTCGTTTACTTTGGTATGAATCAGTTAAGGGGCTTTCATGAGCATGAAGAGAATGGGTATATCCTACAGTTTGAGATGTTTTTACTCTGTTGCCTCTTTAAGAGCTTGGTAACTGGTTGCTTCCTTGAATTGAATGGAACACTTCAGAACAAGGCCTCCAAGAGTATCTAAGAGTATGGAACAAAGTAAAAAACATGTAATCTCTCATCCTTTACAGCATTAATGTTAAACTGGAATGCCTATGACTAAGCTATAACGGATATCAAGAGCCACTCGAACCTGGTAGGCCGTATTCCATGGTTACTGCTGGAAACTAGAAAAAGAGAAGAGGACCAGAAAGACCTGGGGGAAGTGGTCTATACTTTGTTAGTGTTACTGGCTCATAGGTAATCTTTACTATCAGCACTTGGACATTCCGCTCTTTGTGTCCTTTCCCTCCTCATTCCTTGGGGATTTCGTTCTCTTTACTTGCTTTGTTGTCATTTTCTGTTTGAGCTTTCAATATTTAATTATGTGGTATTCCCATTATTAAAAGTTTTAGTCTTATGCTCGATTTCTTTTATTGTTATTCGGCAGATCTGAATTCAATTGGTGGATTGGTGCCTCTTCTTGGTTACTTAAAGAACTCCCATGCAAACATTAGAGCCAAAGCGGCAGAAGTCGTAAGTACAATTGTTCAGAACAACCCGAGGAGCCAACAACTGGTAATGGAAGCTAATGGCCTAGAACCCCTTCTGTCAAATTTTACCTCAGATCCTGATGTTACTGCCCGCACTAAAGCTCTTGGTGCAATTTCATGTGAGTACTTTCCCCGTTATGATTTATTAGTTAAGTGTGCCCTTTAAATTTTGGTGTCATGTCATCTGTGTTTTCCAGTAGCGTTGATCAACTAGTTTTTTTATTTTTCCTTTATTCCAGCTTTAATTAGGCACAACAAGCCTGCCATTGCTGCATTTCGTCTTGCAAATGGTTATGCAGGTTTAAGAGATGCTTTGAGTTCTGAGAGTGTGAGATTTCAGAGGTACTATTTTCTATATCATGCACTAGACGTTTCTGAATCAACCATTGATGAAGCTGCTGCTTTCCCGTAAACCTTCCTCTTTTATATTCCTTTCTAATAGGTATAGTCCTGTTCTTTTGCAGGAAAGCCCTTAACTTGATCCATTATTTACTACATGAGAATCATTCAGACTGCAATGTAGTGACTG</genome_strand>
        <mrna_strand>CTCCAAAGTTCCAGTACCTTCTAGTTTCTACAAAATCCCTTCAATAAATTCTTCTTCTTCTCCAAAATCAAACTCCAAAAAATCCAACTACGAAATCAAAAATGGCGAAAGAAGGACCTAATTGGGATGGTTTATTGAAATGGAGTCTATCTCATGCTGATGGTACCAATCCTCCTTCTCGCAATTTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGAGGACAGGAGGTGGTTCATGGAGGCTATGCAAGCTCAAACTGTTGATGTAATAAAAAGAATGAAGGAGATTACACTTGTCATGCAAACACCAGAGCAGGTTTTGGAATCACAGGGAGTGACTTCCCAAGATATTGAAG.........................................................................................ATATGCTGGATGAGCTACAAGAACATGTTGAATCAATTGACATGGCTAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGAACTCAATTGGTGGATTGGTGCCTCTTCTTGGTTACTTAAAGAACTCCCATGCAAACATTAGAGCCAAAGCGGCAGAAGTTGTAAGTACAATTGTTCAGAACAACCCGAGGAGCCAACAGCTGGTAATGGAAGCTAATGGCCTAGAACCTCTTCTGTCAAATTTCACCTCAGATCCTGATGTTACTGCCCGCACAAAAGCTCTTGGTGCAATTTCAT........................................................................................................................CTTTAATCAGGCACAACAAGCCTGCCATTGCTGCATTTCGTCTTGCAAATGGTTATGCAGCTTTAAGAGATGCTTTGAGTTCGGAGAATGTGAGATTTCAAAG..........................................................................................................................GAAAGCCCTTAACGTGATCCATTATTTACTGCAAGAGAATCATTCAGACTGCAATGTAGTGACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E561892" ref_strand="+" ref_description="SGN-E561892 [20097]">
      <seq>ttctagtttctacaaaatcccttcaataaattcttcttcttctccaaaatcaaactccaaaaaatccaactacgaaatcaaaaatggcgaaagaaggacctaattgggatggtttattgaaatggagtctatctcatgctgatggtaccaatcctccttctcgcaatttgagtgaggaggacaggaggtggttcatggaggctatgcaagctcaaactgttgatgtaataaaaagaatgaaggagattacacttgtcatgcaaacaccagagcaggttttggaatcacagggagtgacttcccaagatattgaagatatgctggatgagctacaagaacatgttgaatcaattgacatggctaatgatctgaactcaattggtggattggtgcctcttcttggttacttaaagaactcccatgcaaacattagagccaaagcggcagaagttgtaagtacaattgttcagaacaacccgaggagccaacagctggtaatggaagctaatggcctagaacctcttctgtcaaatttcacctcagatcctgatgttactgcccgcacaaaagctcttggtgcaatttcatctttaatcaggcacaacaagcctgccattgctgcatttcgtcttgcaaatggttatgcagctttaagagatgctttgagttcggagaatgtgagatttcaaaggaaagcccttaacgtgatccattatttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="79618" stop="84009"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79918" g_stop="80088" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="0.918"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80089" i_stop="80743" i_length="655">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80744" g_stop="80886" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="315" r_length="143" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80887" i_stop="80975" i_length="89">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80976" g_stop="81026" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="366" r_length="51" r_score="0.961"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81027" i_stop="83112" i_length="2086">
            <donor d_prob="0.985" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83113" g_stop="83334" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="588" r_length="222" r_score="0.973"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83335" i_stop="83454" i_length="120">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="83455" g_stop="83557" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="589" r_stop="691" r_length="103" r_score="0.951"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="83558" i_stop="83679" i_length="122">
            <donor d_prob="0.700" d_score="0.92"/>
            <acceptor a_prob="0.925" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="83680" g_stop="83709" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="692" r_stop="721" r_length="30" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E561892" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E561892" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79918" e_stop="80088"/>
          <exon e_start="80744" e_stop="80886"/>
          <exon e_start="80976" e_stop="81026"/>
          <exon e_start="83113" e_stop="83334"/>
          <exon e_start="83455" e_stop="83557"/>
          <exon e_start="83680" e_stop="83709"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTAGTTTCTACAAAATCTCTTCAATAAATTCTTCTTCTTC-CCTAAACAAAACACCGAAAAATCTAAGTAAGAAATCAAAAATGGCGAAAGAGGGACCTAATTGGGATGGTTTATTGAAATGGAGTCTATCTCATGCTGATGGTACCAAACCTCCTCCTCGCAATTTGAGGTAACCAAATTCGAATCAATGAATTTCTTTGTTTTATAGCAAAAGATTGAAACTTTTGATATGGGTTTTGTTGGTTGAATAGTAATTTCAGTTTAGATAGTTTGTAGGTTTGAGTTGTGTGCTGTGCACACTAAGCCTCTTGTGTTTAAGTGGAGAGGGTGGGCTTATTGTTCTTGTTTTCAAAGGTTGTAGTGTAAAAGAGGGGTTCTGTAGGTGATGATGACAAGCTAAAAATAGTTGAAACATGAGTGGAATTGATAAAAGAGGATTTATGTAGCAGGCAGATTGGTTTTGGGTTGATTGGGGTAGTATTTGAAAAAAGTTTCCATTTTATATGTTCATTGATTGGTGTAGGGATAGATCTTTTTGTAGTATGCTTTGTCATGGTTTCTTTTAGCATTTTGTCTCGACTTCTTTACTTCAGTTGTTTTCATTTTTCGAATTGTGTTGTAATGATTTTACTTGAGCTGAGGGTCTATGAGAAACAACATCATTATCCTTCCCAAACCCCACTTATGGAATTACACTTGGTATCTTATTCTTGTTGATTGATTAATTGGTGTAGTAATTTGAATGATTCTATTTTTATTTGTTCTTTTCTGTGGAAGTTGGTCTTATATTGAAGTTATTGGTTGATTGTGTTACTGTGGGTCAGTGAGGAGGACAGGAGGTGGTTCATGGAGGCTATGCAAGCTCAAACTGTTGATGTGATTAAGAGAATGAAGGAGATTACACTTGTCATGCAAACACCAGAGCAGGTTTTGGAATCACAGGGGGTGACTTCCCAAGATATTGAAGGTACTTGTTTAGTTTTTCTTGATAATGTGTAATCATATTTTATGAATTTTACTCGTTTTGACTTTTTTGCTGGCCTTGTGATTTCACAGATATGCTGGATGAGCTACAAGAACATGTCGAATCAATTGATATGGCTAATGGTGAGTTCTTGGTGTAATTTAGTTATTCAGAAATGTGTGTGTATCATGATTTGGTAGTTACGCATATTACATAATTCTTGCTAACCAGCTAATTTGGAATTGAGGTCTTGTTGTGGAAGCTCTATCTGTTAGAGTGTCCCACATTAGTTGAGGGAATAGATTGTTGTCTCCTTATAGTATTGGACAATTCTTGTCACATGAGCTAGCTTTTGTTGTTGATTTAGGCCCAATTCTTGTCTCCATTTCTTAATATGGAGTTAGAGCTGCATCAGTATTTTCTTAGTTTACTGAATACTAGGCCCAATGTTAAATTGTTCATGCTCTGGTTATCTACTCTCGGTTATCAGAGGAGACTTAACATCTCACATTGTTTGAAAGAATGACCCCTTGTCTTTTATATATTTTTTGCTCAATCCTCACCTCTTAAGCTAGCTTTTGGGGTCCAGTGCCCAAGGCCAATTCACTTGATAATATCATGTAGGTTTAATTGAAGTTTCCAATGTTGCACGTCATGTGCTTGAACTTCGCCACATTCAAAATCACTGTATTTAAGTGGACGAGAGTAGAGGCGCGTACCAATTATTGCCTAGTTATGAGCCGGCCCTCGGAATTTCTCGGCAATTAAAACAAAATTGTCCTGATCAAAGAGTAGTTTCATTGGTTATATGAGTTCATTCTTTTGCTGTTCTTTGACAAAGGTAGTCTGTAGTTCATATCATTGTGTTCATCTAGGAGCCAAGATTGTAATTATTTCCTGTTTTGTGAAGTGTGACCTGACAAGCATCCTGTATTTCTGTGAGTAGATACTGACCAGCATGCATGTTGGATACTCCATAAATAGTGCATATTTGAAGAATCCGACACGGGTGCAACAACATTTTTGGAGAGTTTGAGCAACATAGTTCTGCAATGGTTTTTTCTTAGACTGAAGAATTTTTGTTCTGTCTCAAAATTGCAGTAATGATATTGCTCTCATCTTTTACCTATGATAAATTCAACGACGTACATCCACTCATTTCAAGGAAAACCATGTGAGAATAGGTGCTCAGTAAAGTTATGCAACTTCATGATAATCTCTATTGAAGATGTTTGTGCTCCATAATCACATATTCAAACAAATAAAAACCTCAGTCACACATATCCTCTTTGATGTTGCTCCTGATTTCCAGATGTTTATCTCTGGTTCCTAGTTATTGTAATTGGTTGTGTTCAGATAATAATTACTTGTTGAAAAACAAAAAATGAAGCATATTAGACCAAGCTGACACTATTAAGTATTCCATAATATACATCACTCTGATCCTCCATCATGCCTTTTTCCGTCATAAGCTTAATTCTGATAATTTATGTCAGCAGTCACAATTTTCTTTTAATATGTATTTCGTATGAATGTACTCTTGGTGTTATTGTGATTTGTGCTCTACATTATGAGGTCCTTGAGACTTCTAGTCAACCTAGAAGTAAAGAAAGAAAGGTCTACCAAGTAGAAAAGAAATAAATGAAGAGGTTTCTCGTTTACTTTGGTATGAATCAGTTAAGGGGCTTTCATGAGCATGAAGAGAATGGGTATATCCTACAGTTTGAGATGTTTTTACTCTGTTGCCTCTTTAAGAGCTTGGTAACTGGTTGCTTCCTTGAATTGAATGGAACACTTCAGAACAAGGCCTCCAAGAGTATCTAAGAGTATGGAACAAAGTAAAAAACATGTAATCTCTCATCCTTTACAGCATTAATGTTAAACTGGAATGCCTATGACTAAGCTATAACGGATATCAAGAGCCACTCGAACCTGGTAGGCCGTATTCCATGGTTACTGCTGGAAACTAGAAAAAGAGAAGAGGACCAGAAAGACCTGGGGGAAGTGGTCTATACTTTGTTAGTGTTACTGGCTCATAGGTAATCTTTACTATCAGCACTTGGACATTCCGCTCTTTGTGTCCTTTCCCTCCTCATTCCTTGGGGATTTCGTTCTCTTTACTTGCTTTGTTGTCATTTTCTGTTTGAGCTTTCAATATTTAATTATGTGGTATTCCCATTATTAAAAGTTTTAGTCTTATGCTCGATTTCTTTTATTGTTATTCGGCAGATCTGAATTCAATTGGTGGATTGGTGCCTCTTCTTGGTTACTTAAAGAACTCCCATGCAAACATTAGAGCCAAAGCGGCAGAAGTCGTAAGTACAATTGTTCAGAACAACCCGAGGAGCCAACAACTGGTAATGGAAGCTAATGGCCTAGAACCCCTTCTGTCAAATTTTACCTCAGATCCTGATGTTACTGCCCGCACTAAAGCTCTTGGTGCAATTTCATGTGAGTACTTTCCCCGTTATGATTTATTAGTTAAGTGTGCCCTTTAAATTTTGGTGTCATGTCATCTGTGTTTTCCAGTAGCGTTGATCAACTAGTTTTTTTATTTTTCCTTTATTCCAGCTTTAATTAGGCACAACAAGCCTGCCATTGCTGCATTTCGTCTTGCAAATGGTTATGCAGGTTTAAGAGATGCTTTGAGTTCTGAGAGTGTGAGATTTCAGAGGTACTATTTTCTATATCATGCACTAGACGTTTCTGAATCAACCATTGATGAAGCTGCTGCTTTCCCGTAAACCTTCCTCTTTTATATTCCTTTCTAATAGGTATAGTCCTGTTCTTTTGCAGGAAAGCCCTTAACTTGATCCATTATTTACT</genome_strand>
        <mrna_strand>TTCTAGTTTCTACAAAATCCCTTCAATAAATTCTTCTTCTTCTCCAAAATCAAACTCCAAAAAATCCAACTACGAAATCAAAAATGGCGAAAGAAGGACCTAATTGGGATGGTTTATTGAAATGGAGTCTATCTCATGCTGATGGTACCAATCCTCCTTCTCGCAATTTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGAGGACAGGAGGTGGTTCATGGAGGCTATGCAAGCTCAAACTGTTGATGTAATAAAAAGAATGAAGGAGATTACACTTGTCATGCAAACACCAGAGCAGGTTTTGGAATCACAGGGAGTGACTTCCCAAGATATTGAAG.........................................................................................ATATGCTGGATGAGCTACAAGAACATGTTGAATCAATTGACATGGCTAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGAACTCAATTGGTGGATTGGTGCCTCTTCTTGGTTACTTAAAGAACTCCCATGCAAACATTAGAGCCAAAGCGGCAGAAGTTGTAAGTACAATTGTTCAGAACAACCCGAGGAGCCAACAGCTGGTAATGGAAGCTAATGGCCTAGAACCTCTTCTGTCAAATTTCACCTCAGATCCTGATGTTACTGCCCGCACAAAAGCTCTTGGTGCAATTTCAT........................................................................................................................CTTTAATCAGGCACAACAAGCCTGCCATTGCTGCATTTCGTCTTGCAAATGGTTATGCAGCTTTAAGAGATGCTTTGAGTTCGGAGAATGTGAGATTTCAAAG..........................................................................................................................GAAAGCCCTTAACGTGATCCATTATTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E562209" ref_strand="+" ref_description="SGN-E562209 [649]">
      <seq>tagtttctccaaaatcccttcaataaattcttcttcttctccaaaatcaaactccaaaaaatccaactacgaaataaaaaatggcgaaagagggacctaattgggatggtttattgaaatggagtctatctcatgctgatggtaccaatcctccttctcgcaatttgagtgaggaggacaggaggtggttcatgngaggctatgcaagctcaaactgttgatgtaataaagagaatgaaggagattacacttgtcatgcaaacaccagagcaggttttgggaatcacagggagtgacttcccaagatattgaagatatgctggatgagctacaagaacatgttgaatcaaattgacatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="79621" stop="81320"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79921" g_stop="80088" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="0.911"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80089" i_stop="80743" i_length="655">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80744" g_stop="80886" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="314" r_length="145" r_score="0.951"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80887" i_stop="80975" i_length="89">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.91"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80976" g_stop="81020" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="360" r_length="46" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E562209" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>356</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E562209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79921" e_stop="80088"/>
          <exon e_start="80744" e_stop="80886"/>
          <exon e_start="80976" e_stop="81020"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTTTCTACAAAATCTCTTCAATAAATTCTTCTTCTTC-CCTAAACAAAACACCGAAAAATCTAAGTAAGAAATCAAAAATGGCGAAAGAGGGACCTAATTGGGATGGTTTATTGAAATGGAGTCTATCTCATGCTGATGGTACCAAACCTCCTCCTCGCAATTTGAGGTAACCAAATTCGAATCAATGAATTTCTTTGTTTTATAGCAAAAGATTGAAACTTTTGATATGGGTTTTGTTGGTTGAATAGTAATTTCAGTTTAGATAGTTTGTAGGTTTGAGTTGTGTGCTGTGCACACTAAGCCTCTTGTGTTTAAGTGGAGAGGGTGGGCTTATTGTTCTTGTTTTCAAAGGTTGTAGTGTAAAAGAGGGGTTCTGTAGGTGATGATGACAAGCTAAAAATAGTTGAAACATGAGTGGAATTGATAAAAGAGGATTTATGTAGCAGGCAGATTGGTTTTGGGTTGATTGGGGTAGTATTTGAAAAAAGTTTCCATTTTATATGTTCATTGATTGGTGTAGGGATAGATCTTTTTGTAGTATGCTTTGTCATGGTTTCTTTTAGCATTTTGTCTCGACTTCTTTACTTCAGTTGTTTTCATTTTTCGAATTGTGTTGTAATGATTTTACTTGAGCTGAGGGTCTATGAGAAACAACATCATTATCCTTCCCAAACCCCACTTATGGAATTACACTTGGTATCTTATTCTTGTTGATTGATTAATTGGTGTAGTAATTTGAATGATTCTATTTTTATTTGTTCTTTTCTGTGGAAGTTGGTCTTATATTGAAGTTATTGGTTGATTGTGTTACTGTGGGTCAGTGAGGAGGACAGGAGGTGGTTCATG-GAGGCTATGCAAGCTCAAACTGTTGATGTGATTAAGAGAATGAAGGAGATTACACTTGTCATGCAAACACCAGAGCAGGTTTTGG-AATCACAGGGGGTGACTTCCCAAGATATTGAAGGTACTTGTTTAGTTTTTCTTGATAATGTGTAATCATATTTTATGAATTTTACTCGTTTTGACTTTTTTGCTGGCCTTGTGATTTCACAGATATGCTGGATGAGCTACAAGAACATGTCGAATC-AATTGATATGG</genome_strand>
        <mrna_strand>TAGTTTCTCCAAAATCCCTTCAATAAATTCTTCTTCTTCTCCAAAATCAAACTCCAAAAAATCCAACTACGAAATAAAAAATGGCGAAAGAGGGACCTAATTGGGATGGTTTATTGAAATGGAGTCTATCTCATGCTGATGGTACCAATCCTCCTTCTCGCAATTTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGAGGACAGGAGGTGGTTCATGNGAGGCTATGCAAGCTCAAACTGTTGATGTAATAAAGAGAATGAAGGAGATTACACTTGTCATGCAAACACCAGAGCAGGTTTTGGGAATCACAGGGAGTGACTTCCCAAGATATTGAAG.........................................................................................ATATGCTGGATGAGCTACAAGAACATGTTGAATCAAATTGACATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E708178" ref_strand="+" ref_description="SGN-E708178 [FA35AC04]">
      <seq>cacattctcttcaataaattcttcttcttccctaaacaaaacaccgaaaaatctaagtaagaaatcaaaaatggcgaaagagggacctaattgggatggtttattgaaatggagtctatctcatgctgatggtaccaaacctcctcctcgcaatttgagtgaggaggacaggaggtggttcatggaggctatgcaagctcaaactgttgatgtgattaagagaatgaaggagattacacttgtcatgcaaacaccagagcaggttttggaatcacagggggtgacttcccaagatattgaagatatgctggatgagctacaagaacatgtcgaatcaattgatatggctaatgatctgaattcaattggtggattggtgcctcttcttggttacttaaagaactcccatgcaaacattagagccaaagcggcagaagtcgtaagtacaattgttcagaacaacccgaggagccaacaactggtaatggaagctaatggcctagaaccccttctgtcaaattttacctcagatcctgatgttactgcccgcactaaagctcttggtgcaatttcatctttaattaggcacaacaagcctgccattgctgcatttcgtcttgcaaatggttatgcaggtttaagagatgctttgagttctgagagtgtgagatttcagaggaaagcccttaacttgatccattatttactacatgagaatcattcagactgcaatgtagtgactgagctaggatttcctcgagttatgatgcatctagcctctagtgatgatggagaagtgcgagagggtgccctacaaggtcttcttgaccttgcccaagacaagacaggagaggttgctggctcctcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="79630" stop="84171"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79930" g_stop="80088" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80089" i_stop="80743" i_length="655">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80744" g_stop="80886" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="302" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80887" i_stop="80975" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80976" g_stop="81026" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="353" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81027" i_stop="83112" i_length="2086">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83113" g_stop="83334" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="575" r_length="222" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83335" i_stop="83454" i_length="120">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="83455" g_stop="83557" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="576" r_stop="678" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="83558" i_stop="83679" i_length="122">
            <donor d_prob="0.700" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="83680" g_stop="83871" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="679" r_stop="870" r_length="192" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E708178" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>870</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E708178" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79930" e_stop="80088"/>
          <exon e_start="80744" e_stop="80886"/>
          <exon e_start="80976" e_stop="81026"/>
          <exon e_start="83113" e_stop="83334"/>
          <exon e_start="83455" e_stop="83557"/>
          <exon e_start="83680" e_stop="83871"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATCTCTTCAATAAATTCTTCTTCTTCCCTAAACAAAACACCGAAAAATCTAAGTAAGAAATCAAAAATGGCGAAAGAGGGACCTAATTGGGATGGTTTATTGAAATGGAGTCTATCTCATGCTGATGGTACCAAACCTCCTCCTCGCAATTTGAGGTAACCAAATTCGAATCAATGAATTTCTTTGTTTTATAGCAAAAGATTGAAACTTTTGATATGGGTTTTGTTGGTTGAATAGTAATTTCAGTTTAGATAGTTTGTAGGTTTGAGTTGTGTGCTGTGCACACTAAGCCTCTTGTGTTTAAGTGGAGAGGGTGGGCTTATTGTTCTTGTTTTCAAAGGTTGTAGTGTAAAAGAGGGGTTCTGTAGGTGATGATGACAAGCTAAAAATAGTTGAAACATGAGTGGAATTGATAAAAGAGGATTTATGTAGCAGGCAGATTGGTTTTGGGTTGATTGGGGTAGTATTTGAAAAAAGTTTCCATTTTATATGTTCATTGATTGGTGTAGGGATAGATCTTTTTGTAGTATGCTTTGTCATGGTTTCTTTTAGCATTTTGTCTCGACTTCTTTACTTCAGTTGTTTTCATTTTTCGAATTGTGTTGTAATGATTTTACTTGAGCTGAGGGTCTATGAGAAACAACATCATTATCCTTCCCAAACCCCACTTATGGAATTACACTTGGTATCTTATTCTTGTTGATTGATTAATTGGTGTAGTAATTTGAATGATTCTATTTTTATTTGTTCTTTTCTGTGGAAGTTGGTCTTATATTGAAGTTATTGGTTGATTGTGTTACTGTGGGTCAGTGAGGAGGACAGGAGGTGGTTCATGGAGGCTATGCAAGCTCAAACTGTTGATGTGATTAAGAGAATGAAGGAGATTACACTTGTCATGCAAACACCAGAGCAGGTTTTGGAATCACAGGGGGTGACTTCCCAAGATATTGAAGGTACTTGTTTAGTTTTTCTTGATAATGTGTAATCATATTTTATGAATTTTACTCGTTTTGACTTTTTTGCTGGCCTTGTGATTTCACAGATATGCTGGATGAGCTACAAGAACATGTCGAATCAATTGATATGGCTAATGGTGAGTTCTTGGTGTAATTTAGTTATTCAGAAATGTGTGTGTATCATGATTTGGTAGTTACGCATATTACATAATTCTTGCTAACCAGCTAATTTGGAATTGAGGTCTTGTTGTGGAAGCTCTATCTGTTAGAGTGTCCCACATTAGTTGAGGGAATAGATTGTTGTCTCCTTATAGTATTGGACAATTCTTGTCACATGAGCTAGCTTTTGTTGTTGATTTAGGCCCAATTCTTGTCTCCATTTCTTAATATGGAGTTAGAGCTGCATCAGTATTTTCTTAGTTTACTGAATACTAGGCCCAATGTTAAATTGTTCATGCTCTGGTTATCTACTCTCGGTTATCAGAGGAGACTTAACATCTCACATTGTTTGAAAGAATGACCCCTTGTCTTTTATATATTTTTTGCTCAATCCTCACCTCTTAAGCTAGCTTTTGGGGTCCAGTGCCCAAGGCCAATTCACTTGATAATATCATGTAGGTTTAATTGAAGTTTCCAATGTTGCACGTCATGTGCTTGAACTTCGCCACATTCAAAATCACTGTATTTAAGTGGACGAGAGTAGAGGCGCGTACCAATTATTGCCTAGTTATGAGCCGGCCCTCGGAATTTCTCGGCAATTAAAACAAAATTGTCCTGATCAAAGAGTAGTTTCATTGGTTATATGAGTTCATTCTTTTGCTGTTCTTTGACAAAGGTAGTCTGTAGTTCATATCATTGTGTTCATCTAGGAGCCAAGATTGTAATTATTTCCTGTTTTGTGAAGTGTGACCTGACAAGCATCCTGTATTTCTGTGAGTAGATACTGACCAGCATGCATGTTGGATACTCCATAAATAGTGCATATTTGAAGAATCCGACACGGGTGCAACAACATTTTTGGAGAGTTTGAGCAACATAGTTCTGCAATGGTTTTTTCTTAGACTGAAGAATTTTTGTTCTGTCTCAAAATTGCAGTAATGATATTGCTCTCATCTTTTACCTATGATAAATTCAACGACGTACATCCACTCATTTCAAGGAAAACCATGTGAGAATAGGTGCTCAGTAAAGTTATGCAACTTCATGATAATCTCTATTGAAGATGTTTGTGCTCCATAATCACATATTCAAACAAATAAAAACCTCAGTCACACATATCCTCTTTGATGTTGCTCCTGATTTCCAGATGTTTATCTCTGGTTCCTAGTTATTGTAATTGGTTGTGTTCAGATAATAATTACTTGTTGAAAAACAAAAAATGAAGCATATTAGACCAAGCTGACACTATTAAGTATTCCATAATATACATCACTCTGATCCTCCATCATGCCTTTTTCCGTCATAAGCTTAATTCTGATAATTTATGTCAGCAGTCACAATTTTCTTTTAATATGTATTTCGTATGAATGTACTCTTGGTGTTATTGTGATTTGTGCTCTACATTATGAGGTCCTTGAGACTTCTAGTCAACCTAGAAGTAAAGAAAGAAAGGTCTACCAAGTAGAAAAGAAATAAATGAAGAGGTTTCTCGTTTACTTTGGTATGAATCAGTTAAGGGGCTTTCATGAGCATGAAGAGAATGGGTATATCCTACAGTTTGAGATGTTTTTACTCTGTTGCCTCTTTAAGAGCTTGGTAACTGGTTGCTTCCTTGAATTGAATGGAACACTTCAGAACAAGGCCTCCAAGAGTATCTAAGAGTATGGAACAAAGTAAAAAACATGTAATCTCTCATCCTTTACAGCATTAATGTTAAACTGGAATGCCTATGACTAAGCTATAACGGATATCAAGAGCCACTCGAACCTGGTAGGCCGTATTCCATGGTTACTGCTGGAAACTAGAAAAAGAGAAGAGGACCAGAAAGACCTGGGGGAAGTGGTCTATACTTTGTTAGTGTTACTGGCTCATAGGTAATCTTTACTATCAGCACTTGGACATTCCGCTCTTTGTGTCCTTTCCCTCCTCATTCCTTGGGGATTTCGTTCTCTTTACTTGCTTTGTTGTCATTTTCTGTTTGAGCTTTCAATATTTAATTATGTGGTATTCCCATTATTAAAAGTTTTAGTCTTATGCTCGATTTCTTTTATTGTTATTCGGCAGATCTGAATTCAATTGGTGGATTGGTGCCTCTTCTTGGTTACTTAAAGAACTCCCATGCAAACATTAGAGCCAAAGCGGCAGAAGTCGTAAGTACAATTGTTCAGAACAACCCGAGGAGCCAACAACTGGTAATGGAAGCTAATGGCCTAGAACCCCTTCTGTCAAATTTTACCTCAGATCCTGATGTTACTGCCCGCACTAAAGCTCTTGGTGCAATTTCATGTGAGTACTTTCCCCGTTATGATTTATTAGTTAAGTGTGCCCTTTAAATTTTGGTGTCATGTCATCTGTGTTTTCCAGTAGCGTTGATCAACTAGTTTTTTTATTTTTCCTTTATTCCAGCTTTAATTAGGCACAACAAGCCTGCCATTGCTGCATTTCGTCTTGCAAATGGTTATGCAGGTTTAAGAGATGCTTTGAGTTCTGAGAGTGTGAGATTTCAGAGGTACTATTTTCTATATCATGCACTAGACGTTTCTGAATCAACCATTGATGAAGCTGCTGCTTTCCCGTAAACCTTCCTCTTTTATATTCCTTTCTAATAGGTATAGTCCTGTTCTTTTGCAGGAAAGCCCTTAACTTGATCCATTATTTACTACATGAGAATCATTCAGACTGCAATGTAGTGACTGAGCTAGGATTTCCTCGAGTTATGATGCATCTAGCCTCTAGTGATGATGGAGAAGTGCGAGAGGGTGCCCTACAAGGTCTTCTTGACCTTGCCCAAGACAAGACAGGAGAGGTTGCTGGCTCCTCATC</genome_strand>
        <mrna_strand>CACATTCTCTTCAATAAATTCTTCTTCTTCCCTAAACAAAACACCGAAAAATCTAAGTAAGAAATCAAAAATGGCGAAAGAGGGACCTAATTGGGATGGTTTATTGAAATGGAGTCTATCTCATGCTGATGGTACCAAACCTCCTCCTCGCAATTTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGAGGACAGGAGGTGGTTCATGGAGGCTATGCAAGCTCAAACTGTTGATGTGATTAAGAGAATGAAGGAGATTACACTTGTCATGCAAACACCAGAGCAGGTTTTGGAATCACAGGGGGTGACTTCCCAAGATATTGAAG.........................................................................................ATATGCTGGATGAGCTACAAGAACATGTCGAATCAATTGATATGGCTAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGAATTCAATTGGTGGATTGGTGCCTCTTCTTGGTTACTTAAAGAACTCCCATGCAAACATTAGAGCCAAAGCGGCAGAAGTCGTAAGTACAATTGTTCAGAACAACCCGAGGAGCCAACAACTGGTAATGGAAGCTAATGGCCTAGAACCCCTTCTGTCAAATTTTACCTCAGATCCTGATGTTACTGCCCGCACTAAAGCTCTTGGTGCAATTTCAT........................................................................................................................CTTTAATTAGGCACAACAAGCCTGCCATTGCTGCATTTCGTCTTGCAAATGGTTATGCAGGTTTAAGAGATGCTTTGAGTTCTGAGAGTGTGAGATTTCAGAG..........................................................................................................................GAAAGCCCTTAACTTGATCCATTATTTACTACATGAGAATCATTCAGACTGCAATGTAGTGACTGAGCTAGGATTTCCTCGAGTTATGATGCATCTAGCCTCTAGTGATGATGGAGAAGTGCGAGAGGGTGCCCTACAAGGTCTTCTTGACCTTGCCCAAGACAAGACAGGAGAGGTTGCTGGCTCCTCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E439702" ref_strand="+" ref_description="SGN-E439702 [cSTA-13-A8]">
      <seq>caaaatcccttcaataaattcttcttctccaaaatcaaactccaaaaaatccaacaacgaaatcaaaaatggcgaaagaaggacctaattgggatggtttattgaaatggagtctatctcatgctgatggtaccaatcctccttctcgcaatttgagtgaggaggacaggaggtggttcatggaggctatgcaatctcaaactgttgatgtaataaagagaatgaaggagattacacttgtcatgcaaacaccagagcaggttttggaatcacagggagtgacttcccaagatattgaagatatgctggatgagctacaagaacatgttgaatcaattgacatggctaatgatctgaactcaattggtggattggtgcctcttcttggttacttaaagaactcccatggaaacattagagccaaagcggcagaagttgtaagtacaattgttcagaacaacccgaggagccaacagctggtaatggaagctaatggcctagaacctcttctgtcaaatttcacctcagatcctgatgttactgcccgcactaaagctcttggtgcaatttcatctttaatcangcacaacaagcctgccattgctgcatttcgtcttgcaaatggttatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="79630" stop="83812"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79930" g_stop="80088" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="0.906"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80089" i_stop="80743" i_length="655">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80744" g_stop="80886" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="300" r_length="143" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80887" i_stop="80975" i_length="89">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80976" g_stop="81026" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="351" r_length="51" r_score="0.961"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81027" i_stop="83112" i_length="2086">
            <donor d_prob="0.985" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83113" g_stop="83334" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="573" r_length="222" r_score="0.973"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83335" i_stop="83454" i_length="120">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="83455" g_stop="83512" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="574" r_stop="631" r_length="58" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E439702" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E439702" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79930" e_stop="80088"/>
          <exon e_start="80744" e_stop="80886"/>
          <exon e_start="80976" e_stop="81026"/>
          <exon e_start="83113" e_stop="83334"/>
          <exon e_start="83455" e_stop="83512"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATCTCTTCAATAAATTCTTCTTCTTCCCTAAACAAAACACCGAAAAATCTAAGTAAGAAATCAAAAATGGCGAAAGAGGGACCTAATTGGGATGGTTTATTGAAATGGAGTCTATCTCATGCTGATGGTACCAAACCTCCTCCTCGCAATTTGAGGTAACCAAATTCGAATCAATGAATTTCTTTGTTTTATAGCAAAAGATTGAAACTTTTGATATGGGTTTTGTTGGTTGAATAGTAATTTCAGTTTAGATAGTTTGTAGGTTTGAGTTGTGTGCTGTGCACACTAAGCCTCTTGTGTTTAAGTGGAGAGGGTGGGCTTATTGTTCTTGTTTTCAAAGGTTGTAGTGTAAAAGAGGGGTTCTGTAGGTGATGATGACAAGCTAAAAATAGTTGAAACATGAGTGGAATTGATAAAAGAGGATTTATGTAGCAGGCAGATTGGTTTTGGGTTGATTGGGGTAGTATTTGAAAAAAGTTTCCATTTTATATGTTCATTGATTGGTGTAGGGATAGATCTTTTTGTAGTATGCTTTGTCATGGTTTCTTTTAGCATTTTGTCTCGACTTCTTTACTTCAGTTGTTTTCATTTTTCGAATTGTGTTGTAATGATTTTACTTGAGCTGAGGGTCTATGAGAAACAACATCATTATCCTTCCCAAACCCCACTTATGGAATTACACTTGGTATCTTATTCTTGTTGATTGATTAATTGGTGTAGTAATTTGAATGATTCTATTTTTATTTGTTCTTTTCTGTGGAAGTTGGTCTTATATTGAAGTTATTGGTTGATTGTGTTACTGTGGGTCAGTGAGGAGGACAGGAGGTGGTTCATGGAGGCTATGCAAGCTCAAACTGTTGATGTGATTAAGAGAATGAAGGAGATTACACTTGTCATGCAAACACCAGAGCAGGTTTTGGAATCACAGGGGGTGACTTCCCAAGATATTGAAGGTACTTGTTTAGTTTTTCTTGATAATGTGTAATCATATTTTATGAATTTTACTCGTTTTGACTTTTTTGCTGGCCTTGTGATTTCACAGATATGCTGGATGAGCTACAAGAACATGTCGAATCAATTGATATGGCTAATGGTGAGTTCTTGGTGTAATTTAGTTATTCAGAAATGTGTGTGTATCATGATTTGGTAGTTACGCATATTACATAATTCTTGCTAACCAGCTAATTTGGAATTGAGGTCTTGTTGTGGAAGCTCTATCTGTTAGAGTGTCCCACATTAGTTGAGGGAATAGATTGTTGTCTCCTTATAGTATTGGACAATTCTTGTCACATGAGCTAGCTTTTGTTGTTGATTTAGGCCCAATTCTTGTCTCCATTTCTTAATATGGAGTTAGAGCTGCATCAGTATTTTCTTAGTTTACTGAATACTAGGCCCAATGTTAAATTGTTCATGCTCTGGTTATCTACTCTCGGTTATCAGAGGAGACTTAACATCTCACATTGTTTGAAAGAATGACCCCTTGTCTTTTATATATTTTTTGCTCAATCCTCACCTCTTAAGCTAGCTTTTGGGGTCCAGTGCCCAAGGCCAATTCACTTGATAATATCATGTAGGTTTAATTGAAGTTTCCAATGTTGCACGTCATGTGCTTGAACTTCGCCACATTCAAAATCACTGTATTTAAGTGGACGAGAGTAGAGGCGCGTACCAATTATTGCCTAGTTATGAGCCGGCCCTCGGAATTTCTCGGCAATTAAAACAAAATTGTCCTGATCAAAGAGTAGTTTCATTGGTTATATGAGTTCATTCTTTTGCTGTTCTTTGACAAAGGTAGTCTGTAGTTCATATCATTGTGTTCATCTAGGAGCCAAGATTGTAATTATTTCCTGTTTTGTGAAGTGTGACCTGACAAGCATCCTGTATTTCTGTGAGTAGATACTGACCAGCATGCATGTTGGATACTCCATAAATAGTGCATATTTGAAGAATCCGACACGGGTGCAACAACATTTTTGGAGAGTTTGAGCAACATAGTTCTGCAATGGTTTTTTCTTAGACTGAAGAATTTTTGTTCTGTCTCAAAATTGCAGTAATGATATTGCTCTCATCTTTTACCTATGATAAATTCAACGACGTACATCCACTCATTTCAAGGAAAACCATGTGAGAATAGGTGCTCAGTAAAGTTATGCAACTTCATGATAATCTCTATTGAAGATGTTTGTGCTCCATAATCACATATTCAAACAAATAAAAACCTCAGTCACACATATCCTCTTTGATGTTGCTCCTGATTTCCAGATGTTTATCTCTGGTTCCTAGTTATTGTAATTGGTTGTGTTCAGATAATAATTACTTGTTGAAAAACAAAAAATGAAGCATATTAGACCAAGCTGACACTATTAAGTATTCCATAATATACATCACTCTGATCCTCCATCATGCCTTTTTCCGTCATAAGCTTAATTCTGATAATTTATGTCAGCAGTCACAATTTTCTTTTAATATGTATTTCGTATGAATGTACTCTTGGTGTTATTGTGATTTGTGCTCTACATTATGAGGTCCTTGAGACTTCTAGTCAACCTAGAAGTAAAGAAAGAAAGGTCTACCAAGTAGAAAAGAAATAAATGAAGAGGTTTCTCGTTTACTTTGGTATGAATCAGTTAAGGGGCTTTCATGAGCATGAAGAGAATGGGTATATCCTACAGTTTGAGATGTTTTTACTCTGTTGCCTCTTTAAGAGCTTGGTAACTGGTTGCTTCCTTGAATTGAATGGAACACTTCAGAACAAGGCCTCCAAGAGTATCTAAGAGTATGGAACAAAGTAAAAAACATGTAATCTCTCATCCTTTACAGCATTAATGTTAAACTGGAATGCCTATGACTAAGCTATAACGGATATCAAGAGCCACTCGAACCTGGTAGGCCGTATTCCATGGTTACTGCTGGAAACTAGAAAAAGAGAAGAGGACCAGAAAGACCTGGGGGAAGTGGTCTATACTTTGTTAGTGTTACTGGCTCATAGGTAATCTTTACTATCAGCACTTGGACATTCCGCTCTTTGTGTCCTTTCCCTCCTCATTCCTTGGGGATTTCGTTCTCTTTACTTGCTTTGTTGTCATTTTCTGTTTGAGCTTTCAATATTTAATTATGTGGTATTCCCATTATTAAAAGTTTTAGTCTTATGCTCGATTTCTTTTATTGTTATTCGGCAGATCTGAATTCAATTGGTGGATTGGTGCCTCTTCTTGGTTACTTAAAGAACTCCCATGCAAACATTAGAGCCAAAGCGGCAGAAGTCGTAAGTACAATTGTTCAGAACAACCCGAGGAGCCAACAACTGGTAATGGAAGCTAATGGCCTAGAACCCCTTCTGTCAAATTTTACCTCAGATCCTGATGTTACTGCCCGCACTAAAGCTCTTGGTGCAATTTCATGTGAGTACTTTCCCCGTTATGATTTATTAGTTAAGTGTGCCCTTTAAATTTTGGTGTCATGTCATCTGTGTTTTCCAGTAGCGTTGATCAACTAGTTTTTTTATTTTTCCTTTATTCCAGCTTTAATTAGGCACAACAAGCCTGCCATTGCTGCATTTCGTCTTGCAAATGGTTATGC</genome_strand>
        <mrna_strand>CAAAATCCCTTCAATAAATTCTTCTTC-T-CCAAAATCAAACTCCAAAAAATCCAACAACGAAATCAAAAATGGCGAAAGAAGGACCTAATTGGGATGGTTTATTGAAATGGAGTCTATCTCATGCTGATGGTACCAATCCTCCTTCTCGCAATTTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGAGGACAGGAGGTGGTTCATGGAGGCTATGCAATCTCAAACTGTTGATGTAATAAAGAGAATGAAGGAGATTACACTTGTCATGCAAACACCAGAGCAGGTTTTGGAATCACAGGGAGTGACTTCCCAAGATATTGAAG.........................................................................................ATATGCTGGATGAGCTACAAGAACATGTTGAATCAATTGACATGGCTAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGAACTCAATTGGTGGATTGGTGCCTCTTCTTGGTTACTTAAAGAACTCCCATGGAAACATTAGAGCCAAAGCGGCAGAAGTTGTAAGTACAATTGTTCAGAACAACCCGAGGAGCCAACAGCTGGTAATGGAAGCTAATGGCCTAGAACCTCTTCTGTCAAATTTCACCTCAGATCCTGATGTTACTGCCCGCACTAAAGCTCTTGGTGCAATTTCAT........................................................................................................................CTTTAATCANGCACAACAAGCCTGCCATTGCTGCATTTCGTCTTGCAAATGGTTATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E256382" ref_strand="+" ref_description="SGN-E256382 [cLEG-38-E13]">
      <seq>aaattcttcttcttccctaaacaaatggaccgaagagtctaagtaagaaatcaaaaatggcgaaagagggacctaattgggatggtttattgaaatggagtctatctcatgctgatgggaccaaacctcctcctcgcaatttgagtgaggaggacaggaggtggttcatggaggctatgcaagctcaaactgttgatgtgattaagagaatgaaggagattacacttgtcatgcaaacaccagagcaagttttggaatcacaaggggtgacttcccaagatattgaagatatgctgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="79645" stop="81195"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79945" g_stop="80088" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80089" i_stop="80743" i_length="655">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80744" g_stop="80886" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="288" r_length="143" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80887" i_stop="80975" i_length="89">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80976" g_stop="80985" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="298" r_length="10" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E256382" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>297</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256382" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79945" e_stop="80088"/>
          <exon e_start="80744" e_stop="80886"/>
          <exon e_start="80976" e_stop="80985"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTCTTCTTCTTCCCTAAACAAA-ACACCGAAAAATCTAAGTAAGAAATCAAAAATGGCGAAAGAGGGACCTAATTGGGATGGTTTATTGAAATGGAGTCTATCTCATGCTGATGGTACCAAACCTCCTCCTCGCAATTTGAGGTAACCAAATTCGAATCAATGAATTTCTTTGTTTTATAGCAAAAGATTGAAACTTTTGATATGGGTTTTGTTGGTTGAATAGTAATTTCAGTTTAGATAGTTTGTAGGTTTGAGTTGTGTGCTGTGCACACTAAGCCTCTTGTGTTTAAGTGGAGAGGGTGGGCTTATTGTTCTTGTTTTCAAAGGTTGTAGTGTAAAAGAGGGGTTCTGTAGGTGATGATGACAAGCTAAAAATAGTTGAAACATGAGTGGAATTGATAAAAGAGGATTTATGTAGCAGGCAGATTGGTTTTGGGTTGATTGGGGTAGTATTTGAAAAAAGTTTCCATTTTATATGTTCATTGATTGGTGTAGGGATAGATCTTTTTGTAGTATGCTTTGTCATGGTTTCTTTTAGCATTTTGTCTCGACTTCTTTACTTCAGTTGTTTTCATTTTTCGAATTGTGTTGTAATGATTTTACTTGAGCTGAGGGTCTATGAGAAACAACATCATTATCCTTCCCAAACCCCACTTATGGAATTACACTTGGTATCTTATTCTTGTTGATTGATTAATTGGTGTAGTAATTTGAATGATTCTATTTTTATTTGTTCTTTTCTGTGGAAGTTGGTCTTATATTGAAGTTATTGGTTGATTGTGTTACTGTGGGTCAGTGAGGAGGACAGGAGGTGGTTCATGGAGGCTATGCAAGCTCAAACTGTTGATGTGATTAAGAGAATGAAGGAGATTACACTTGTCATGCAAACACCAGAGCAGGTTTTGGAATCACAGGGGGTGACTTCCCAAGATATTGAAGGTACTTGTTTAGTTTTTCTTGATAATGTGTAATCATATTTTATGAATTTTACTCGTTTTGACTTTTTTGCTGGCCTTGTGATTTCACAGATATGCTGGA</genome_strand>
        <mrna_strand>AAATTCTTCTTCTTCCCTAAACAAATGGACCGAAGAGTCTAAGTAAGAAATCAAAAATGGCGAAAGAGGGACCTAATTGGGATGGTTTATTGAAATGGAGTCTATCTCATGCTGATGGGACCAAACCTCCTCCTCGCAATTTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGAGGACAGGAGGTGGTTCATGGAGGCTATGCAAGCTCAAACTGTTGATGTGATTAAGAGAATGAAGGAGATTACACTTGTCATGCAAACACCAGAGCAAGTTTTGGAATCACAAGGGGTGACTTCCCAAGATATTGAAG.........................................................................................ATATGCTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E416841" ref_strand="+" ref_description="SGN-E416841 [STM-23-B10]">
      <seq>caaacctccaaaaaatccaaaacgaaatcaaaaatggcgaaagaaggccctaattgggctggtttacttgaaatggaagtctatctcatgctgatggtaccaatcctccttctcgcaatttgagtgaggaggacaggaaggtggttcatggaggctatgcaatctcaaactgttgatgtaataaagagaatgaaggagattacacttgtcatgcaaacaccagagcaggttttggaatcacagggagtgacttcccaagatattgaagatatgctggatgagctacaagaacatgttgaatcaattgacatggctaatgatctgaactcaattggtggattggtgcctcttcttggttacttaaagaactcccatggaaacattagagccaaagcggcagaagttgtaagtacaattgttcagaacaacccgaggagccaacagctggtaatggaagctaatggcctagaacctcttctgtcaaatttcacctcagatcctgatgttactgcccgcactaaagctcttggtgcaatttcatctttaatcangcacaacaagcctgccattgctgcatttcgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="79688" stop="83796"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79966" g_stop="80088" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="0.870"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80089" i_stop="80743" i_length="655">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80744" g_stop="80886" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="268" r_length="144" r_score="0.958"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80887" i_stop="80975" i_length="89">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80976" g_stop="81026" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="319" r_length="51" r_score="0.961"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81027" i_stop="83112" i_length="2086">
            <donor d_prob="0.985" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83113" g_stop="83334" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="541" r_length="222" r_score="0.973"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83335" i_stop="83454" i_length="120">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="83455" g_stop="83496" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="583" r_length="42" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E416841" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E416841" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79966" e_stop="80088"/>
          <exon e_start="80744" e_stop="80886"/>
          <exon e_start="80976" e_stop="81026"/>
          <exon e_start="83113" e_stop="83334"/>
          <exon e_start="83455" e_stop="83496"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAACACCGAAAAATCTAAGTAAGAAATCAAAAATGGCGAAAGAGGGACCTAATTGGGATGGTTTA-TTGAAATGG-AGTCTATCTCATGCTGATGGTACCAAACCTCCTCCTCGCAATTTGAGGTAACCAAATTCGAATCAATGAATTTCTTTGTTTTATAGCAAAAGATTGAAACTTTTGATATGGGTTTTGTTGGTTGAATAGTAATTTCAGTTTAGATAGTTTGTAGGTTTGAGTTGTGTGCTGTGCACACTAAGCCTCTTGTGTTTAAGTGGAGAGGGTGGGCTTATTGTTCTTGTTTTCAAAGGTTGTAGTGTAAAAGAGGGGTTCTGTAGGTGATGATGACAAGCTAAAAATAGTTGAAACATGAGTGGAATTGATAAAAGAGGATTTATGTAGCAGGCAGATTGGTTTTGGGTTGATTGGGGTAGTATTTGAAAAAAGTTTCCATTTTATATGTTCATTGATTGGTGTAGGGATAGATCTTTTTGTAGTATGCTTTGTCATGGTTTCTTTTAGCATTTTGTCTCGACTTCTTTACTTCAGTTGTTTTCATTTTTCGAATTGTGTTGTAATGATTTTACTTGAGCTGAGGGTCTATGAGAAACAACATCATTATCCTTCCCAAACCCCACTTATGGAATTACACTTGGTATCTTATTCTTGTTGATTGATTAATTGGTGTAGTAATTTGAATGATTCTATTTTTATTTGTTCTTTTCTGTGGAAGTTGGTCTTATATTGAAGTTATTGGTTGATTGTGTTACTGTGGGTCAGTGAGGAGGACAGG-AGGTGGTTCATGGAGGCTATGCAAGCTCAAACTGTTGATGTGATTAAGAGAATGAAGGAGATTACACTTGTCATGCAAACACCAGAGCAGGTTTTGGAATCACAGGGGGTGACTTCCCAAGATATTGAAGGTACTTGTTTAGTTTTTCTTGATAATGTGTAATCATATTTTATGAATTTTACTCGTTTTGACTTTTTTGCTGGCCTTGTGATTTCACAGATATGCTGGATGAGCTACAAGAACATGTCGAATCAATTGATATGGCTAATGGTGAGTTCTTGGTGTAATTTAGTTATTCAGAAATGTGTGTGTATCATGATTTGGTAGTTACGCATATTACATAATTCTTGCTAACCAGCTAATTTGGAATTGAGGTCTTGTTGTGGAAGCTCTATCTGTTAGAGTGTCCCACATTAGTTGAGGGAATAGATTGTTGTCTCCTTATAGTATTGGACAATTCTTGTCACATGAGCTAGCTTTTGTTGTTGATTTAGGCCCAATTCTTGTCTCCATTTCTTAATATGGAGTTAGAGCTGCATCAGTATTTTCTTAGTTTACTGAATACTAGGCCCAATGTTAAATTGTTCATGCTCTGGTTATCTACTCTCGGTTATCAGAGGAGACTTAACATCTCACATTGTTTGAAAGAATGACCCCTTGTCTTTTATATATTTTTTGCTCAATCCTCACCTCTTAAGCTAGCTTTTGGGGTCCAGTGCCCAAGGCCAATTCACTTGATAATATCATGTAGGTTTAATTGAAGTTTCCAATGTTGCACGTCATGTGCTTGAACTTCGCCACATTCAAAATCACTGTATTTAAGTGGACGAGAGTAGAGGCGCGTACCAATTATTGCCTAGTTATGAGCCGGCCCTCGGAATTTCTCGGCAATTAAAACAAAATTGTCCTGATCAAAGAGTAGTTTCATTGGTTATATGAGTTCATTCTTTTGCTGTTCTTTGACAAAGGTAGTCTGTAGTTCATATCATTGTGTTCATCTAGGAGCCAAGATTGTAATTATTTCCTGTTTTGTGAAGTGTGACCTGACAAGCATCCTGTATTTCTGTGAGTAGATACTGACCAGCATGCATGTTGGATACTCCATAAATAGTGCATATTTGAAGAATCCGACACGGGTGCAACAACATTTTTGGAGAGTTTGAGCAACATAGTTCTGCAATGGTTTTTTCTTAGACTGAAGAATTTTTGTTCTGTCTCAAAATTGCAGTAATGATATTGCTCTCATCTTTTACCTATGATAAATTCAACGACGTACATCCACTCATTTCAAGGAAAACCATGTGAGAATAGGTGCTCAGTAAAGTTATGCAACTTCATGATAATCTCTATTGAAGATGTTTGTGCTCCATAATCACATATTCAAACAAATAAAAACCTCAGTCACACATATCCTCTTTGATGTTGCTCCTGATTTCCAGATGTTTATCTCTGGTTCCTAGTTATTGTAATTGGTTGTGTTCAGATAATAATTACTTGTTGAAAAACAAAAAATGAAGCATATTAGACCAAGCTGACACTATTAAGTATTCCATAATATACATCACTCTGATCCTCCATCATGCCTTTTTCCGTCATAAGCTTAATTCTGATAATTTATGTCAGCAGTCACAATTTTCTTTTAATATGTATTTCGTATGAATGTACTCTTGGTGTTATTGTGATTTGTGCTCTACATTATGAGGTCCTTGAGACTTCTAGTCAACCTAGAAGTAAAGAAAGAAAGGTCTACCAAGTAGAAAAGAAATAAATGAAGAGGTTTCTCGTTTACTTTGGTATGAATCAGTTAAGGGGCTTTCATGAGCATGAAGAGAATGGGTATATCCTACAGTTTGAGATGTTTTTACTCTGTTGCCTCTTTAAGAGCTTGGTAACTGGTTGCTTCCTTGAATTGAATGGAACACTTCAGAACAAGGCCTCCAAGAGTATCTAAGAGTATGGAACAAAGTAAAAAACATGTAATCTCTCATCCTTTACAGCATTAATGTTAAACTGGAATGCCTATGACTAAGCTATAACGGATATCAAGAGCCACTCGAACCTGGTAGGCCGTATTCCATGGTTACTGCTGGAAACTAGAAAAAGAGAAGAGGACCAGAAAGACCTGGGGGAAGTGGTCTATACTTTGTTAGTGTTACTGGCTCATAGGTAATCTTTACTATCAGCACTTGGACATTCCGCTCTTTGTGTCCTTTCCCTCCTCATTCCTTGGGGATTTCGTTCTCTTTACTTGCTTTGTTGTCATTTTCTGTTTGAGCTTTCAATATTTAATTATGTGGTATTCCCATTATTAAAAGTTTTAGTCTTATGCTCGATTTCTTTTATTGTTATTCGGCAGATCTGAATTCAATTGGTGGATTGGTGCCTCTTCTTGGTTACTTAAAGAACTCCCATGCAAACATTAGAGCCAAAGCGGCAGAAGTCGTAAGTACAATTGTTCAGAACAACCCGAGGAGCCAACAACTGGTAATGGAAGCTAATGGCCTAGAACCCCTTCTGTCAAATTTTACCTCAGATCCTGATGTTACTGCCCGCACTAAAGCTCTTGGTGCAATTTCATGTGAGTACTTTCCCCGTTATGATTTATTAGTTAAGTGTGCCCTTTAAATTTTGGTGTCATGTCATCTGTGTTTTCCAGTAGCGTTGATCAACTAGTTTTTTTATTTTTCCTTTATTCCAGCTTTAATTAGGCACAACAAGCCTGCCATTGCTGCATTTCGTC</genome_strand>
        <mrna_strand>CAAACCTCCAAAAAATCCAAA-ACGAAATCAAAAATGGCGAAAGAAGGCCCTAATTGGGCTGGTTTACTTGAAATGGAAGTCTATCTCATGCTGATGGTACCAATCCTCCTTCTCGCAATTTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGAGGACAGGAAGGTGGTTCATGGAGGCTATGCAATCTCAAACTGTTGATGTAATAAAGAGAATGAAGGAGATTACACTTGTCATGCAAACACCAGAGCAGGTTTTGGAATCACAGGGAGTGACTTCCCAAGATATTGAAG.........................................................................................ATATGCTGGATGAGCTACAAGAACATGTTGAATCAATTGACATGGCTAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGAACTCAATTGGTGGATTGGTGCCTCTTCTTGGTTACTTAAAGAACTCCCATGGAAACATTAGAGCCAAAGCGGCAGAAGTTGTAAGTACAATTGTTCAGAACAACCCGAGGAGCCAACAGCTGGTAATGGAAGCTAATGGCCTAGAACCTCTTCTGTCAAATTTCACCTCAGATCCTGATGTTACTGCCCGCACTAAAGCTCTTGGTGCAATTTCAT........................................................................................................................CTTTAATCANGCACAACAAGCCTGCCATTGCTGCATTTCGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E479058" ref_strand="+" ref_description="SGN-E479058 [cSTD-8-K6]">
      <seq>aaaaaaatcaactaccgaaatcaaaaatggcgaaagaaggacctaattgggctggtttattgaaatggagtctatctcatgctgatggtaccaatcatccttctcgcaatttgagtgaggaggacaggaggtggttcatggaggctatgcaagctcaaactgttgatgttataaagagaatgaaggagattacacttgtcatgcaaacaccagagcaggttttggaatcgcagggagtgacttcccaagatattgaagatatgctggatgagctacaagaacatgttgaatcaattgacatggctaatgatctgaactcaattggtggattggtgcctcttcttggttacttaaagaactcccatgcaaacattagagccaaagcggcagaagttgtaagtacaattgttcagaacaacccgaggagccaacagctggtaatggaggctaatggcctagaacctcttctgtcaaatttcacctcagatcctgatgttactgcccgcactaaagctcttggtgcaatttcatctttaatcaggcacaacaagcctgccattgctgcatttcgtcttgcaaatggttatgcagctttaagagatgctttgagttcggagaatgtgagatttcaaaggaaagcccttaacgtgatccattatttactgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="79690" stop="84012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79974" g_stop="80088" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.887"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80089" i_stop="80743" i_length="655">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80744" g_stop="80886" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="258" r_length="143" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80887" i_stop="80975" i_length="89">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80976" g_stop="81026" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="309" r_length="51" r_score="0.961"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81027" i_stop="83112" i_length="2086">
            <donor d_prob="0.985" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83113" g_stop="83334" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="531" r_length="222" r_score="0.973"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83335" i_stop="83454" i_length="120">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="83455" g_stop="83557" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="634" r_length="103" r_score="0.951"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="83558" i_stop="83679" i_length="122">
            <donor d_prob="0.700" d_score="0.92"/>
            <acceptor a_prob="0.925" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="83680" g_stop="83712" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="635" r_stop="667" r_length="33" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E479058" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E479058" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79974" e_stop="80088"/>
          <exon e_start="80744" e_stop="80886"/>
          <exon e_start="80976" e_stop="81026"/>
          <exon e_start="83113" e_stop="83334"/>
          <exon e_start="83455" e_stop="83557"/>
          <exon e_start="83680" e_stop="83712"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAAATCTAAGTAAGAAATCAAAAATGGCGAAAGAGGGACCTAATTGGGATGGTTTATTGAAATGGAGTCTATCTCATGCTGATGGTACCAAACCTCCTCCTCGCAATTTGAGGTAACCAAATTCGAATCAATGAATTTCTTTGTTTTATAGCAAAAGATTGAAACTTTTGATATGGGTTTTGTTGGTTGAATAGTAATTTCAGTTTAGATAGTTTGTAGGTTTGAGTTGTGTGCTGTGCACACTAAGCCTCTTGTGTTTAAGTGGAGAGGGTGGGCTTATTGTTCTTGTTTTCAAAGGTTGTAGTGTAAAAGAGGGGTTCTGTAGGTGATGATGACAAGCTAAAAATAGTTGAAACATGAGTGGAATTGATAAAAGAGGATTTATGTAGCAGGCAGATTGGTTTTGGGTTGATTGGGGTAGTATTTGAAAAAAGTTTCCATTTTATATGTTCATTGATTGGTGTAGGGATAGATCTTTTTGTAGTATGCTTTGTCATGGTTTCTTTTAGCATTTTGTCTCGACTTCTTTACTTCAGTTGTTTTCATTTTTCGAATTGTGTTGTAATGATTTTACTTGAGCTGAGGGTCTATGAGAAACAACATCATTATCCTTCCCAAACCCCACTTATGGAATTACACTTGGTATCTTATTCTTGTTGATTGATTAATTGGTGTAGTAATTTGAATGATTCTATTTTTATTTGTTCTTTTCTGTGGAAGTTGGTCTTATATTGAAGTTATTGGTTGATTGTGTTACTGTGGGTCAGTGAGGAGGACAGGAGGTGGTTCATGGAGGCTATGCAAGCTCAAACTGTTGATGTGATTAAGAGAATGAAGGAGATTACACTTGTCATGCAAACACCAGAGCAGGTTTTGGAATCACAGGGGGTGACTTCCCAAGATATTGAAGGTACTTGTTTAGTTTTTCTTGATAATGTGTAATCATATTTTATGAATTTTACTCGTTTTGACTTTTTTGCTGGCCTTGTGATTTCACAGATATGCTGGATGAGCTACAAGAACATGTCGAATCAATTGATATGGCTAATGGTGAGTTCTTGGTGTAATTTAGTTATTCAGAAATGTGTGTGTATCATGATTTGGTAGTTACGCATATTACATAATTCTTGCTAACCAGCTAATTTGGAATTGAGGTCTTGTTGTGGAAGCTCTATCTGTTAGAGTGTCCCACATTAGTTGAGGGAATAGATTGTTGTCTCCTTATAGTATTGGACAATTCTTGTCACATGAGCTAGCTTTTGTTGTTGATTTAGGCCCAATTCTTGTCTCCATTTCTTAATATGGAGTTAGAGCTGCATCAGTATTTTCTTAGTTTACTGAATACTAGGCCCAATGTTAAATTGTTCATGCTCTGGTTATCTACTCTCGGTTATCAGAGGAGACTTAACATCTCACATTGTTTGAAAGAATGACCCCTTGTCTTTTATATATTTTTTGCTCAATCCTCACCTCTTAAGCTAGCTTTTGGGGTCCAGTGCCCAAGGCCAATTCACTTGATAATATCATGTAGGTTTAATTGAAGTTTCCAATGTTGCACGTCATGTGCTTGAACTTCGCCACATTCAAAATCACTGTATTTAAGTGGACGAGAGTAGAGGCGCGTACCAATTATTGCCTAGTTATGAGCCGGCCCTCGGAATTTCTCGGCAATTAAAACAAAATTGTCCTGATCAAAGAGTAGTTTCATTGGTTATATGAGTTCATTCTTTTGCTGTTCTTTGACAAAGGTAGTCTGTAGTTCATATCATTGTGTTCATCTAGGAGCCAAGATTGTAATTATTTCCTGTTTTGTGAAGTGTGACCTGACAAGCATCCTGTATTTCTGTGAGTAGATACTGACCAGCATGCATGTTGGATACTCCATAAATAGTGCATATTTGAAGAATCCGACACGGGTGCAACAACATTTTTGGAGAGTTTGAGCAACATAGTTCTGCAATGGTTTTTTCTTAGACTGAAGAATTTTTGTTCTGTCTCAAAATTGCAGTAATGATATTGCTCTCATCTTTTACCTATGATAAATTCAACGACGTACATCCACTCATTTCAAGGAAAACCATGTGAGAATAGGTGCTCAGTAAAGTTATGCAACTTCATGATAATCTCTATTGAAGATGTTTGTGCTCCATAATCACATATTCAAACAAATAAAAACCTCAGTCACACATATCCTCTTTGATGTTGCTCCTGATTTCCAGATGTTTATCTCTGGTTCCTAGTTATTGTAATTGGTTGTGTTCAGATAATAATTACTTGTTGAAAAACAAAAAATGAAGCATATTAGACCAAGCTGACACTATTAAGTATTCCATAATATACATCACTCTGATCCTCCATCATGCCTTTTTCCGTCATAAGCTTAATTCTGATAATTTATGTCAGCAGTCACAATTTTCTTTTAATATGTATTTCGTATGAATGTACTCTTGGTGTTATTGTGATTTGTGCTCTACATTATGAGGTCCTTGAGACTTCTAGTCAACCTAGAAGTAAAGAAAGAAAGGTCTACCAAGTAGAAAAGAAATAAATGAAGAGGTTTCTCGTTTACTTTGGTATGAATCAGTTAAGGGGCTTTCATGAGCATGAAGAGAATGGGTATATCCTACAGTTTGAGATGTTTTTACTCTGTTGCCTCTTTAAGAGCTTGGTAACTGGTTGCTTCCTTGAATTGAATGGAACACTTCAGAACAAGGCCTCCAAGAGTATCTAAGAGTATGGAACAAAGTAAAAAACATGTAATCTCTCATCCTTTACAGCATTAATGTTAAACTGGAATGCCTATGACTAAGCTATAACGGATATCAAGAGCCACTCGAACCTGGTAGGCCGTATTCCATGGTTACTGCTGGAAACTAGAAAAAGAGAAGAGGACCAGAAAGACCTGGGGGAAGTGGTCTATACTTTGTTAGTGTTACTGGCTCATAGGTAATCTTTACTATCAGCACTTGGACATTCCGCTCTTTGTGTCCTTTCCCTCCTCATTCCTTGGGGATTTCGTTCTCTTTACTTGCTTTGTTGTCATTTTCTGTTTGAGCTTTCAATATTTAATTATGTGGTATTCCCATTATTAAAAGTTTTAGTCTTATGCTCGATTTCTTTTATTGTTATTCGGCAGATCTGAATTCAATTGGTGGATTGGTGCCTCTTCTTGGTTACTTAAAGAACTCCCATGCAAACATTAGAGCCAAAGCGGCAGAAGTCGTAAGTACAATTGTTCAGAACAACCCGAGGAGCCAACAACTGGTAATGGAAGCTAATGGCCTAGAACCCCTTCTGTCAAATTTTACCTCAGATCCTGATGTTACTGCCCGCACTAAAGCTCTTGGTGCAATTTCATGTGAGTACTTTCCCCGTTATGATTTATTAGTTAAGTGTGCCCTTTAAATTTTGGTGTCATGTCATCTGTGTTTTCCAGTAGCGTTGATCAACTAGTTTTTTTATTTTTCCTTTATTCCAGCTTTAATTAGGCACAACAAGCCTGCCATTGCTGCATTTCGTCTTGCAAATGGTTATGCAGGTTTAAGAGATGCTTTGAGTTCTGAGAGTGTGAGATTTCAGAGGTACTATTTTCTATATCATGCACTAGACGTTTCTGAATCAACCATTGATGAAGCTGCTGCTTTCCCGTAAACCTTCCTCTTTTATATTCCTTTCTAATAGGTATAGTCCTGTTCTTTTGCAGGAAAGCCCTTAACTTGATCCATTATTTACTACA</genome_strand>
        <mrna_strand>AAAAAAATCAACTACCGAAATCAAAAATGGCGAAAGAAGGACCTAATTGGGCTGGTTTATTGAAATGGAGTCTATCTCATGCTGATGGTACCAATCATCCTTCTCGCAATTTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGAGGACAGGAGGTGGTTCATGGAGGCTATGCAAGCTCAAACTGTTGATGTTATAAAGAGAATGAAGGAGATTACACTTGTCATGCAAACACCAGAGCAGGTTTTGGAATCGCAGGGAGTGACTTCCCAAGATATTGAAG.........................................................................................ATATGCTGGATGAGCTACAAGAACATGTTGAATCAATTGACATGGCTAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGAACTCAATTGGTGGATTGGTGCCTCTTCTTGGTTACTTAAAGAACTCCCATGCAAACATTAGAGCCAAAGCGGCAGAAGTTGTAAGTACAATTGTTCAGAACAACCCGAGGAGCCAACAGCTGGTAATGGAGGCTAATGGCCTAGAACCTCTTCTGTCAAATTTCACCTCAGATCCTGATGTTACTGCCCGCACTAAAGCTCTTGGTGCAATTTCAT........................................................................................................................CTTTAATCAGGCACAACAAGCCTGCCATTGCTGCATTTCGTCTTGCAAATGGTTATGCAGCTTTAAGAGATGCTTTGAGTTCGGAGAATGTGAGATTTCAAAG..........................................................................................................................GAAAGCCCTTAACGTGATCCATTATTTACTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E455479" ref_strand="+" ref_description="SGN-E455479 [cSTS-26-K22]">
      <seq>aaaaatccaactacgaaatcaaaaatggcgaaagaaggacctaattgggatggtttattgaaatggagtctatctcatgctgatggtaccaatcctccttctcgcaatttgagtgaggaggacaggaggtggttcatggaggctatgcaagctcaaactgttgatgtaataaaaagaatgaaggagattacacttgtcatgcaaacaccagagcaggttttggaatcacagggagtgacttcccaagatattgaagatatgctggatgagctacaagaacatgttgaatcaattgacatggctaatgatctgaactcaattggtggattggtgcctcttcttggttacttaaagaactcccatgcaaacattagagccaaagcggcagaagttgtaagtacaattgttcagaacaacccgaggagccaacagctggtaatggaagctaatggcctagaacctcttctgtcaaatttcacctcagatcctgatgttactgcccgcacaaaagctcttggtgcaatttcatctttaatcaggcacaacaagcctgccattgctgcatttcgtcttgcaaatggttatgcagctttaagagatgctttgagttcggagaatgtgagatttcaaaggaaagcccttaacgtgatccattatttactgcaagaagatcattcagactgcaatgtagtgactgagcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="79676" stop="84049"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79976" g_stop="80088" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80089" i_stop="80743" i_length="655">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80744" g_stop="80886" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="256" r_length="143" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80887" i_stop="80975" i_length="89">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80976" g_stop="81026" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="307" r_length="51" r_score="0.961"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81027" i_stop="83112" i_length="2086">
            <donor d_prob="0.985" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83113" g_stop="83334" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="529" r_length="222" r_score="0.973"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83335" i_stop="83454" i_length="120">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="83455" g_stop="83557" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="632" r_length="103" r_score="0.951"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="83558" i_stop="83679" i_length="122">
            <donor d_prob="0.700" d_score="0.92"/>
            <acceptor a_prob="0.925" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="83680" g_stop="83749" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="633" r_stop="702" r_length="70" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E455479" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E455479" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79976" e_stop="80088"/>
          <exon e_start="80744" e_stop="80886"/>
          <exon e_start="80976" e_stop="81026"/>
          <exon e_start="83113" e_stop="83334"/>
          <exon e_start="83455" e_stop="83557"/>
          <exon e_start="83680" e_stop="83749"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATCTAAGTAAGAAATCAAAAATGGCGAAAGAGGGACCTAATTGGGATGGTTTATTGAAATGGAGTCTATCTCATGCTGATGGTACCAAACCTCCTCCTCGCAATTTGAGGTAACCAAATTCGAATCAATGAATTTCTTTGTTTTATAGCAAAAGATTGAAACTTTTGATATGGGTTTTGTTGGTTGAATAGTAATTTCAGTTTAGATAGTTTGTAGGTTTGAGTTGTGTGCTGTGCACACTAAGCCTCTTGTGTTTAAGTGGAGAGGGTGGGCTTATTGTTCTTGTTTTCAAAGGTTGTAGTGTAAAAGAGGGGTTCTGTAGGTGATGATGACAAGCTAAAAATAGTTGAAACATGAGTGGAATTGATAAAAGAGGATTTATGTAGCAGGCAGATTGGTTTTGGGTTGATTGGGGTAGTATTTGAAAAAAGTTTCCATTTTATATGTTCATTGATTGGTGTAGGGATAGATCTTTTTGTAGTATGCTTTGTCATGGTTTCTTTTAGCATTTTGTCTCGACTTCTTTACTTCAGTTGTTTTCATTTTTCGAATTGTGTTGTAATGATTTTACTTGAGCTGAGGGTCTATGAGAAACAACATCATTATCCTTCCCAAACCCCACTTATGGAATTACACTTGGTATCTTATTCTTGTTGATTGATTAATTGGTGTAGTAATTTGAATGATTCTATTTTTATTTGTTCTTTTCTGTGGAAGTTGGTCTTATATTGAAGTTATTGGTTGATTGTGTTACTGTGGGTCAGTGAGGAGGACAGGAGGTGGTTCATGGAGGCTATGCAAGCTCAAACTGTTGATGTGATTAAGAGAATGAAGGAGATTACACTTGTCATGCAAACACCAGAGCAGGTTTTGGAATCACAGGGGGTGACTTCCCAAGATATTGAAGGTACTTGTTTAGTTTTTCTTGATAATGTGTAATCATATTTTATGAATTTTACTCGTTTTGACTTTTTTGCTGGCCTTGTGATTTCACAGATATGCTGGATGAGCTACAAGAACATGTCGAATCAATTGATATGGCTAATGGTGAGTTCTTGGTGTAATTTAGTTATTCAGAAATGTGTGTGTATCATGATTTGGTAGTTACGCATATTACATAATTCTTGCTAACCAGCTAATTTGGAATTGAGGTCTTGTTGTGGAAGCTCTATCTGTTAGAGTGTCCCACATTAGTTGAGGGAATAGATTGTTGTCTCCTTATAGTATTGGACAATTCTTGTCACATGAGCTAGCTTTTGTTGTTGATTTAGGCCCAATTCTTGTCTCCATTTCTTAATATGGAGTTAGAGCTGCATCAGTATTTTCTTAGTTTACTGAATACTAGGCCCAATGTTAAATTGTTCATGCTCTGGTTATCTACTCTCGGTTATCAGAGGAGACTTAACATCTCACATTGTTTGAAAGAATGACCCCTTGTCTTTTATATATTTTTTGCTCAATCCTCACCTCTTAAGCTAGCTTTTGGGGTCCAGTGCCCAAGGCCAATTCACTTGATAATATCATGTAGGTTTAATTGAAGTTTCCAATGTTGCACGTCATGTGCTTGAACTTCGCCACATTCAAAATCACTGTATTTAAGTGGACGAGAGTAGAGGCGCGTACCAATTATTGCCTAGTTATGAGCCGGCCCTCGGAATTTCTCGGCAATTAAAACAAAATTGTCCTGATCAAAGAGTAGTTTCATTGGTTATATGAGTTCATTCTTTTGCTGTTCTTTGACAAAGGTAGTCTGTAGTTCATATCATTGTGTTCATCTAGGAGCCAAGATTGTAATTATTTCCTGTTTTGTGAAGTGTGACCTGACAAGCATCCTGTATTTCTGTGAGTAGATACTGACCAGCATGCATGTTGGATACTCCATAAATAGTGCATATTTGAAGAATCCGACACGGGTGCAACAACATTTTTGGAGAGTTTGAGCAACATAGTTCTGCAATGGTTTTTTCTTAGACTGAAGAATTTTTGTTCTGTCTCAAAATTGCAGTAATGATATTGCTCTCATCTTTTACCTATGATAAATTCAACGACGTACATCCACTCATTTCAAGGAAAACCATGTGAGAATAGGTGCTCAGTAAAGTTATGCAACTTCATGATAATCTCTATTGAAGATGTTTGTGCTCCATAATCACATATTCAAACAAATAAAAACCTCAGTCACACATATCCTCTTTGATGTTGCTCCTGATTTCCAGATGTTTATCTCTGGTTCCTAGTTATTGTAATTGGTTGTGTTCAGATAATAATTACTTGTTGAAAAACAAAAAATGAAGCATATTAGACCAAGCTGACACTATTAAGTATTCCATAATATACATCACTCTGATCCTCCATCATGCCTTTTTCCGTCATAAGCTTAATTCTGATAATTTATGTCAGCAGTCACAATTTTCTTTTAATATGTATTTCGTATGAATGTACTCTTGGTGTTATTGTGATTTGTGCTCTACATTATGAGGTCCTTGAGACTTCTAGTCAACCTAGAAGTAAAGAAAGAAAGGTCTACCAAGTAGAAAAGAAATAAATGAAGAGGTTTCTCGTTTACTTTGGTATGAATCAGTTAAGGGGCTTTCATGAGCATGAAGAGAATGGGTATATCCTACAGTTTGAGATGTTTTTACTCTGTTGCCTCTTTAAGAGCTTGGTAACTGGTTGCTTCCTTGAATTGAATGGAACACTTCAGAACAAGGCCTCCAAGAGTATCTAAGAGTATGGAACAAAGTAAAAAACATGTAATCTCTCATCCTTTACAGCATTAATGTTAAACTGGAATGCCTATGACTAAGCTATAACGGATATCAAGAGCCACTCGAACCTGGTAGGCCGTATTCCATGGTTACTGCTGGAAACTAGAAAAAGAGAAGAGGACCAGAAAGACCTGGGGGAAGTGGTCTATACTTTGTTAGTGTTACTGGCTCATAGGTAATCTTTACTATCAGCACTTGGACATTCCGCTCTTTGTGTCCTTTCCCTCCTCATTCCTTGGGGATTTCGTTCTCTTTACTTGCTTTGTTGTCATTTTCTGTTTGAGCTTTCAATATTTAATTATGTGGTATTCCCATTATTAAAAGTTTTAGTCTTATGCTCGATTTCTTTTATTGTTATTCGGCAGATCTGAATTCAATTGGTGGATTGGTGCCTCTTCTTGGTTACTTAAAGAACTCCCATGCAAACATTAGAGCCAAAGCGGCAGAAGTCGTAAGTACAATTGTTCAGAACAACCCGAGGAGCCAACAACTGGTAATGGAAGCTAATGGCCTAGAACCCCTTCTGTCAAATTTTACCTCAGATCCTGATGTTACTGCCCGCACTAAAGCTCTTGGTGCAATTTCATGTGAGTACTTTCCCCGTTATGATTTATTAGTTAAGTGTGCCCTTTAAATTTTGGTGTCATGTCATCTGTGTTTTCCAGTAGCGTTGATCAACTAGTTTTTTTATTTTTCCTTTATTCCAGCTTTAATTAGGCACAACAAGCCTGCCATTGCTGCATTTCGTCTTGCAAATGGTTATGCAGGTTTAAGAGATGCTTTGAGTTCTGAGAGTGTGAGATTTCAGAGGTACTATTTTCTATATCATGCACTAGACGTTTCTGAATCAACCATTGATGAAGCTGCTGCTTTCCCGTAAACCTTCCTCTTTTATATTCCTTTCTAATAGGTATAGTCCTGTTCTTTTGCAGGAAAGCCCTTAACTTGATCCATTATTTACTACATGAGAATCATTCAGACTGCAATGTAGTGACTGAGCTA</genome_strand>
        <mrna_strand>AAAAATCCAACTACGAAATCAAAAATGGCGAAAGAAGGACCTAATTGGGATGGTTTATTGAAATGGAGTCTATCTCATGCTGATGGTACCAATCCTCCTTCTCGCAATTTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGAGGACAGGAGGTGGTTCATGGAGGCTATGCAAGCTCAAACTGTTGATGTAATAAAAAGAATGAAGGAGATTACACTTGTCATGCAAACACCAGAGCAGGTTTTGGAATCACAGGGAGTGACTTCCCAAGATATTGAAG.........................................................................................ATATGCTGGATGAGCTACAAGAACATGTTGAATCAATTGACATGGCTAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGAACTCAATTGGTGGATTGGTGCCTCTTCTTGGTTACTTAAAGAACTCCCATGCAAACATTAGAGCCAAAGCGGCAGAAGTTGTAAGTACAATTGTTCAGAACAACCCGAGGAGCCAACAGCTGGTAATGGAAGCTAATGGCCTAGAACCTCTTCTGTCAAATTTCACCTCAGATCCTGATGTTACTGCCCGCACAAAAGCTCTTGGTGCAATTTCAT........................................................................................................................CTTTAATCAGGCACAACAAGCCTGCCATTGCTGCATTTCGTCTTGCAAATGGTTATGCAGCTTTAAGAGATGCTTTGAGTTCGGAGAATGTGAGATTTCAAAG..........................................................................................................................GAAAGCCCTTAACGTGATCCATTATTTACTGCAAGAAGATCATTCAGACTGCAATGTAGTGACTGAGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E475316" ref_strand="+" ref_description="SGN-E475316 [cSTB-39-L20]">
      <seq>aaaaatccaactacgaaatcaaaaatggcgaaagaaggacctaattgggatggtttattgaaatggagtctatctcatgctgatggtaccaatcctccttctcgcaatttgagtgaggaggacaggaggtggttcatggaggctatgcaagctcaaactgttgatgtaataaaaagaatgaaggagattacacttgtcatgcaaacaccagagcaggttttggaatcacagggagtgacttcccaagatattgaagatatgctggatgagctacaagaacatgttgaatcaattgacatggctaatgatctgaactcaattggtggattggtgcctcttcttggttacttaaagaactcccatgcaaacattagagccaaagcggcagaagttgtaagtacaattgttcagaacaacccgaggagccaacagctggtaatggaagctaatggcctagaacctcttctgtcaaatttcacctcagatcctgatgttactgcccgcacaaaagctcttggtgcaatttcatcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="79676" stop="83636"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79976" g_stop="80088" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80089" i_stop="80743" i_length="655">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80744" g_stop="80886" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="256" r_length="143" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80887" i_stop="80975" i_length="89">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80976" g_stop="81026" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="307" r_length="51" r_score="0.961"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81027" i_stop="83112" i_length="2086">
            <donor d_prob="0.985" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83113" g_stop="83334" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="529" r_length="222" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E475316" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E475316" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79976" e_stop="80088"/>
          <exon e_start="80744" e_stop="80886"/>
          <exon e_start="80976" e_stop="81026"/>
          <exon e_start="83113" e_stop="83334"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATCTAAGTAAGAAATCAAAAATGGCGAAAGAGGGACCTAATTGGGATGGTTTATTGAAATGGAGTCTATCTCATGCTGATGGTACCAAACCTCCTCCTCGCAATTTGAGGTAACCAAATTCGAATCAATGAATTTCTTTGTTTTATAGCAAAAGATTGAAACTTTTGATATGGGTTTTGTTGGTTGAATAGTAATTTCAGTTTAGATAGTTTGTAGGTTTGAGTTGTGTGCTGTGCACACTAAGCCTCTTGTGTTTAAGTGGAGAGGGTGGGCTTATTGTTCTTGTTTTCAAAGGTTGTAGTGTAAAAGAGGGGTTCTGTAGGTGATGATGACAAGCTAAAAATAGTTGAAACATGAGTGGAATTGATAAAAGAGGATTTATGTAGCAGGCAGATTGGTTTTGGGTTGATTGGGGTAGTATTTGAAAAAAGTTTCCATTTTATATGTTCATTGATTGGTGTAGGGATAGATCTTTTTGTAGTATGCTTTGTCATGGTTTCTTTTAGCATTTTGTCTCGACTTCTTTACTTCAGTTGTTTTCATTTTTCGAATTGTGTTGTAATGATTTTACTTGAGCTGAGGGTCTATGAGAAACAACATCATTATCCTTCCCAAACCCCACTTATGGAATTACACTTGGTATCTTATTCTTGTTGATTGATTAATTGGTGTAGTAATTTGAATGATTCTATTTTTATTTGTTCTTTTCTGTGGAAGTTGGTCTTATATTGAAGTTATTGGTTGATTGTGTTACTGTGGGTCAGTGAGGAGGACAGGAGGTGGTTCATGGAGGCTATGCAAGCTCAAACTGTTGATGTGATTAAGAGAATGAAGGAGATTACACTTGTCATGCAAACACCAGAGCAGGTTTTGGAATCACAGGGGGTGACTTCCCAAGATATTGAAGGTACTTGTTTAGTTTTTCTTGATAATGTGTAATCATATTTTATGAATTTTACTCGTTTTGACTTTTTTGCTGGCCTTGTGATTTCACAGATATGCTGGATGAGCTACAAGAACATGTCGAATCAATTGATATGGCTAATGGTGAGTTCTTGGTGTAATTTAGTTATTCAGAAATGTGTGTGTATCATGATTTGGTAGTTACGCATATTACATAATTCTTGCTAACCAGCTAATTTGGAATTGAGGTCTTGTTGTGGAAGCTCTATCTGTTAGAGTGTCCCACATTAGTTGAGGGAATAGATTGTTGTCTCCTTATAGTATTGGACAATTCTTGTCACATGAGCTAGCTTTTGTTGTTGATTTAGGCCCAATTCTTGTCTCCATTTCTTAATATGGAGTTAGAGCTGCATCAGTATTTTCTTAGTTTACTGAATACTAGGCCCAATGTTAAATTGTTCATGCTCTGGTTATCTACTCTCGGTTATCAGAGGAGACTTAACATCTCACATTGTTTGAAAGAATGACCCCTTGTCTTTTATATATTTTTTGCTCAATCCTCACCTCTTAAGCTAGCTTTTGGGGTCCAGTGCCCAAGGCCAATTCACTTGATAATATCATGTAGGTTTAATTGAAGTTTCCAATGTTGCACGTCATGTGCTTGAACTTCGCCACATTCAAAATCACTGTATTTAAGTGGACGAGAGTAGAGGCGCGTACCAATTATTGCCTAGTTATGAGCCGGCCCTCGGAATTTCTCGGCAATTAAAACAAAATTGTCCTGATCAAAGAGTAGTTTCATTGGTTATATGAGTTCATTCTTTTGCTGTTCTTTGACAAAGGTAGTCTGTAGTTCATATCATTGTGTTCATCTAGGAGCCAAGATTGTAATTATTTCCTGTTTTGTGAAGTGTGACCTGACAAGCATCCTGTATTTCTGTGAGTAGATACTGACCAGCATGCATGTTGGATACTCCATAAATAGTGCATATTTGAAGAATCCGACACGGGTGCAACAACATTTTTGGAGAGTTTGAGCAACATAGTTCTGCAATGGTTTTTTCTTAGACTGAAGAATTTTTGTTCTGTCTCAAAATTGCAGTAATGATATTGCTCTCATCTTTTACCTATGATAAATTCAACGACGTACATCCACTCATTTCAAGGAAAACCATGTGAGAATAGGTGCTCAGTAAAGTTATGCAACTTCATGATAATCTCTATTGAAGATGTTTGTGCTCCATAATCACATATTCAAACAAATAAAAACCTCAGTCACACATATCCTCTTTGATGTTGCTCCTGATTTCCAGATGTTTATCTCTGGTTCCTAGTTATTGTAATTGGTTGTGTTCAGATAATAATTACTTGTTGAAAAACAAAAAATGAAGCATATTAGACCAAGCTGACACTATTAAGTATTCCATAATATACATCACTCTGATCCTCCATCATGCCTTTTTCCGTCATAAGCTTAATTCTGATAATTTATGTCAGCAGTCACAATTTTCTTTTAATATGTATTTCGTATGAATGTACTCTTGGTGTTATTGTGATTTGTGCTCTACATTATGAGGTCCTTGAGACTTCTAGTCAACCTAGAAGTAAAGAAAGAAAGGTCTACCAAGTAGAAAAGAAATAAATGAAGAGGTTTCTCGTTTACTTTGGTATGAATCAGTTAAGGGGCTTTCATGAGCATGAAGAGAATGGGTATATCCTACAGTTTGAGATGTTTTTACTCTGTTGCCTCTTTAAGAGCTTGGTAACTGGTTGCTTCCTTGAATTGAATGGAACACTTCAGAACAAGGCCTCCAAGAGTATCTAAGAGTATGGAACAAAGTAAAAAACATGTAATCTCTCATCCTTTACAGCATTAATGTTAAACTGGAATGCCTATGACTAAGCTATAACGGATATCAAGAGCCACTCGAACCTGGTAGGCCGTATTCCATGGTTACTGCTGGAAACTAGAAAAAGAGAAGAGGACCAGAAAGACCTGGGGGAAGTGGTCTATACTTTGTTAGTGTTACTGGCTCATAGGTAATCTTTACTATCAGCACTTGGACATTCCGCTCTTTGTGTCCTTTCCCTCCTCATTCCTTGGGGATTTCGTTCTCTTTACTTGCTTTGTTGTCATTTTCTGTTTGAGCTTTCAATATTTAATTATGTGGTATTCCCATTATTAAAAGTTTTAGTCTTATGCTCGATTTCTTTTATTGTTATTCGGCAGATCTGAATTCAATTGGTGGATTGGTGCCTCTTCTTGGTTACTTAAAGAACTCCCATGCAAACATTAGAGCCAAAGCGGCAGAAGTCGTAAGTACAATTGTTCAGAACAACCCGAGGAGCCAACAACTGGTAATGGAAGCTAATGGCCTAGAACCCCTTCTGTCAAATTTTACCTCAGATCCTGATGTTACTGCCCGCACTAAAGCTCTTGGTGCAATTTCAT</genome_strand>
        <mrna_strand>AAAAATCCAACTACGAAATCAAAAATGGCGAAAGAAGGACCTAATTGGGATGGTTTATTGAAATGGAGTCTATCTCATGCTGATGGTACCAATCCTCCTTCTCGCAATTTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGAGGACAGGAGGTGGTTCATGGAGGCTATGCAAGCTCAAACTGTTGATGTAATAAAAAGAATGAAGGAGATTACACTTGTCATGCAAACACCAGAGCAGGTTTTGGAATCACAGGGAGTGACTTCCCAAGATATTGAAG.........................................................................................ATATGCTGGATGAGCTACAAGAACATGTTGAATCAATTGACATGGCTAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGAACTCAATTGGTGGATTGGTGCCTCTTCTTGGTTACTTAAAGAACTCCCATGCAAACATTAGAGCCAAAGCGGCAGAAGTTGTAAGTACAATTGTTCAGAACAACCCGAGGAGCCAACAGCTGGTAATGGAAGCTAATGGCCTAGAACCTCTTCTGTCAAATTTCACCTCAGATCCTGATGTTACTGCCCGCACAAAAGCTCTTGGTGCAATTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E711060" ref_strand="+" ref_description="SGN-E711060 [FA57DD12]">
      <seq>aagaaatcaaaaatggcgaaagagggacctaattgggatggtttattgaaatggagtctatctcatgctgatggtaccaaacctcctcctcgcaatttgagtgaggaggacaggaggtggttcatggaggctatgcaagctcaaactgttgatgtgattaagagaatgaaggagattacacttgtcatgcaaacaccagagcaggttttggaatcacagggggtgacttcccaagatattgaagatatgctggatgagctacaagaacatgtccaatcaattgatatggctaatgatctgaattcaattggtggattggtgcctcttcttggttacttaaagaactcccatgcaaacattagagccaaagcggcagaagtcctaagtacaattgttcagaacaacccgaggagccaacaactggtaatggaagctaccggccccccacccccttctgtcaaattttacctcagatcctgatgttactgcccgcactaaagctcttggtgcaattccatctctaattaggcacaacaagcctgccattgctgcattccctcttgcaaatggttatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="79688" stop="83813"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79988" g_stop="80088" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80089" i_stop="80743" i_length="655">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80744" g_stop="80886" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="244" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80887" i_stop="80975" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80976" g_stop="81026" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="295" r_length="51" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81027" i_stop="83112" i_length="2086">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83113" g_stop="83334" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="518" r_length="223" r_score="0.955"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83335" i_stop="83454" i_length="120">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="83455" g_stop="83513" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="577" r_length="59" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E711060" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711060" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79988" e_stop="80088"/>
          <exon e_start="80744" e_stop="80886"/>
          <exon e_start="80976" e_stop="81026"/>
          <exon e_start="83113" e_stop="83334"/>
          <exon e_start="83455" e_stop="83513"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAATCAAAAATGGCGAAAGAGGGACCTAATTGGGATGGTTTATTGAAATGGAGTCTATCTCATGCTGATGGTACCAAACCTCCTCCTCGCAATTTGAGGTAACCAAATTCGAATCAATGAATTTCTTTGTTTTATAGCAAAAGATTGAAACTTTTGATATGGGTTTTGTTGGTTGAATAGTAATTTCAGTTTAGATAGTTTGTAGGTTTGAGTTGTGTGCTGTGCACACTAAGCCTCTTGTGTTTAAGTGGAGAGGGTGGGCTTATTGTTCTTGTTTTCAAAGGTTGTAGTGTAAAAGAGGGGTTCTGTAGGTGATGATGACAAGCTAAAAATAGTTGAAACATGAGTGGAATTGATAAAAGAGGATTTATGTAGCAGGCAGATTGGTTTTGGGTTGATTGGGGTAGTATTTGAAAAAAGTTTCCATTTTATATGTTCATTGATTGGTGTAGGGATAGATCTTTTTGTAGTATGCTTTGTCATGGTTTCTTTTAGCATTTTGTCTCGACTTCTTTACTTCAGTTGTTTTCATTTTTCGAATTGTGTTGTAATGATTTTACTTGAGCTGAGGGTCTATGAGAAACAACATCATTATCCTTCCCAAACCCCACTTATGGAATTACACTTGGTATCTTATTCTTGTTGATTGATTAATTGGTGTAGTAATTTGAATGATTCTATTTTTATTTGTTCTTTTCTGTGGAAGTTGGTCTTATATTGAAGTTATTGGTTGATTGTGTTACTGTGGGTCAGTGAGGAGGACAGGAGGTGGTTCATGGAGGCTATGCAAGCTCAAACTGTTGATGTGATTAAGAGAATGAAGGAGATTACACTTGTCATGCAAACACCAGAGCAGGTTTTGGAATCACAGGGGGTGACTTCCCAAGATATTGAAGGTACTTGTTTAGTTTTTCTTGATAATGTGTAATCATATTTTATGAATTTTACTCGTTTTGACTTTTTTGCTGGCCTTGTGATTTCACAGATATGCTGGATGAGCTACAAGAACATGTCGAATCAATTGATATGGCTAATGGTGAGTTCTTGGTGTAATTTAGTTATTCAGAAATGTGTGTGTATCATGATTTGGTAGTTACGCATATTACATAATTCTTGCTAACCAGCTAATTTGGAATTGAGGTCTTGTTGTGGAAGCTCTATCTGTTAGAGTGTCCCACATTAGTTGAGGGAATAGATTGTTGTCTCCTTATAGTATTGGACAATTCTTGTCACATGAGCTAGCTTTTGTTGTTGATTTAGGCCCAATTCTTGTCTCCATTTCTTAATATGGAGTTAGAGCTGCATCAGTATTTTCTTAGTTTACTGAATACTAGGCCCAATGTTAAATTGTTCATGCTCTGGTTATCTACTCTCGGTTATCAGAGGAGACTTAACATCTCACATTGTTTGAAAGAATGACCCCTTGTCTTTTATATATTTTTTGCTCAATCCTCACCTCTTAAGCTAGCTTTTGGGGTCCAGTGCCCAAGGCCAATTCACTTGATAATATCATGTAGGTTTAATTGAAGTTTCCAATGTTGCACGTCATGTGCTTGAACTTCGCCACATTCAAAATCACTGTATTTAAGTGGACGAGAGTAGAGGCGCGTACCAATTATTGCCTAGTTATGAGCCGGCCCTCGGAATTTCTCGGCAATTAAAACAAAATTGTCCTGATCAAAGAGTAGTTTCATTGGTTATATGAGTTCATTCTTTTGCTGTTCTTTGACAAAGGTAGTCTGTAGTTCATATCATTGTGTTCATCTAGGAGCCAAGATTGTAATTATTTCCTGTTTTGTGAAGTGTGACCTGACAAGCATCCTGTATTTCTGTGAGTAGATACTGACCAGCATGCATGTTGGATACTCCATAAATAGTGCATATTTGAAGAATCCGACACGGGTGCAACAACATTTTTGGAGAGTTTGAGCAACATAGTTCTGCAATGGTTTTTTCTTAGACTGAAGAATTTTTGTTCTGTCTCAAAATTGCAGTAATGATATTGCTCTCATCTTTTACCTATGATAAATTCAACGACGTACATCCACTCATTTCAAGGAAAACCATGTGAGAATAGGTGCTCAGTAAAGTTATGCAACTTCATGATAATCTCTATTGAAGATGTTTGTGCTCCATAATCACATATTCAAACAAATAAAAACCTCAGTCACACATATCCTCTTTGATGTTGCTCCTGATTTCCAGATGTTTATCTCTGGTTCCTAGTTATTGTAATTGGTTGTGTTCAGATAATAATTACTTGTTGAAAAACAAAAAATGAAGCATATTAGACCAAGCTGACACTATTAAGTATTCCATAATATACATCACTCTGATCCTCCATCATGCCTTTTTCCGTCATAAGCTTAATTCTGATAATTTATGTCAGCAGTCACAATTTTCTTTTAATATGTATTTCGTATGAATGTACTCTTGGTGTTATTGTGATTTGTGCTCTACATTATGAGGTCCTTGAGACTTCTAGTCAACCTAGAAGTAAAGAAAGAAAGGTCTACCAAGTAGAAAAGAAATAAATGAAGAGGTTTCTCGTTTACTTTGGTATGAATCAGTTAAGGGGCTTTCATGAGCATGAAGAGAATGGGTATATCCTACAGTTTGAGATGTTTTTACTCTGTTGCCTCTTTAAGAGCTTGGTAACTGGTTGCTTCCTTGAATTGAATGGAACACTTCAGAACAAGGCCTCCAAGAGTATCTAAGAGTATGGAACAAAGTAAAAAACATGTAATCTCTCATCCTTTACAGCATTAATGTTAAACTGGAATGCCTATGACTAAGCTATAACGGATATCAAGAGCCACTCGAACCTGGTAGGCCGTATTCCATGGTTACTGCTGGAAACTAGAAAAAGAGAAGAGGACCAGAAAGACCTGGGGGAAGTGGTCTATACTTTGTTAGTGTTACTGGCTCATAGGTAATCTTTACTATCAGCACTTGGACATTCCGCTCTTTGTGTCCTTTCCCTCCTCATTCCTTGGGGATTTCGTTCTCTTTACTTGCTTTGTTGTCATTTTCTGTTTGAGCTTTCAATATTTAATTATGTGGTATTCCCATTATTAAAAGTTTTAGTCTTATGCTCGATTTCTTTTATTGTTATTCGGCAGATCTGAATTCAATTGGTGGATTGGTGCCTCTTCTTGGTTACTTAAAGAACTCCCATGCAAACATTAGAGCCAAAGCGGCAGAAGTCGTAAGTACAATTGTTCAGAACAACCCGAGGAGCCAACAACTGGTAATGGAAGCTAATGG-CCTAGAACCCCTTCTGTCAAATTTTACCTCAGATCCTGATGTTACTGCCCGCACTAAAGCTCTTGGTGCAATTTCATGTGAGTACTTTCCCCGTTATGATTTATTAGTTAAGTGTGCCCTTTAAATTTTGGTGTCATGTCATCTGTGTTTTCCAGTAGCGTTGATCAACTAGTTTTTTTATTTTTCCTTTATTCCAGCTTTAATTAGGCACAACAAGCCTGCCATTGCTGCATTTCGTCTTGCAAATGGTTATGCA</genome_strand>
        <mrna_strand>AAGAAATCAAAAATGGCGAAAGAGGGACCTAATTGGGATGGTTTATTGAAATGGAGTCTATCTCATGCTGATGGTACCAAACCTCCTCCTCGCAATTTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGAGGACAGGAGGTGGTTCATGGAGGCTATGCAAGCTCAAACTGTTGATGTGATTAAGAGAATGAAGGAGATTACACTTGTCATGCAAACACCAGAGCAGGTTTTGGAATCACAGGGGGTGACTTCCCAAGATATTGAAG.........................................................................................ATATGCTGGATGAGCTACAAGAACATGTCCAATCAATTGATATGGCTAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGAATTCAATTGGTGGATTGGTGCCTCTTCTTGGTTACTTAAAGAACTCCCATGCAAACATTAGAGCCAAAGCGGCAGAAGTCCTAAGTACAATTGTTCAGAACAACCCGAGGAGCCAACAACTGGTAATGGAAGCTACCGGCCCCCCACCCCCTTCTGTCAAATTTTACCTCAGATCCTGATGTTACTGCCCGCACTAAAGCTCTTGGTGCAATTCCAT........................................................................................................................CTCTAATTAGGCACAACAAGCCTGCCATTGCTGCATTCCCTCTTGCAAATGGTTATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E569365" ref_strand="+" ref_description="SGN-E569365 [13792]">
      <seq>cgaaatcaaaaatggcgaaagaaggacctaattgggatggtttattgaaatggagtctatctcatgctgatggtaccaatcctccttctcgacaatttgagtgaggaggacaggaggtggttcatggaggctatgcaatctcaaactgttgatgtaataaagagaatgaaggagattacacttgtcatgcaaacaccagagcaggttttggaatcacagggagtgacttcccaagatattgaagatatgctggatgagctacaagaacatgttgaatcaattgacatggctaatgatctgaactcaattggtggattggtgcctcttcttggttacttaaagaactcccatggaaacattagagccaaagcggcagaagttgtaagtacaattgttcagaacaacccgaggagccaacagctggtaatggaagctaatggcctagaacctcttctgtcaaatttcacctcagatcctgatgttactgcccgcactaaagctcttggtgcaatttcatctttaatcaggcacaacaagcctgccattgctgcatttcgtcttgcaaatggtttatgcaagctttaagagattgctttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="79690" stop="83831"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79989" g_stop="80088" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80089" i_stop="80743" i_length="655">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80744" g_stop="80886" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="244" r_length="143" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80887" i_stop="80975" i_length="89">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80976" g_stop="81026" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="295" r_length="51" r_score="0.961"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81027" i_stop="83112" i_length="2086">
            <donor d_prob="0.985" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83113" g_stop="83334" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="517" r_length="222" r_score="0.973"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83335" i_stop="83454" i_length="120">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="83455" g_stop="83532" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="598" r_length="81" r_score="0.885"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E569365" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E569365" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79989" e_stop="80088"/>
          <exon e_start="80744" e_stop="80886"/>
          <exon e_start="80976" e_stop="81026"/>
          <exon e_start="83113" e_stop="83334"/>
          <exon e_start="83455" e_stop="83532"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATCAAAAATGGCGAAAGAGGGACCTAATTGGGATGGTTTATTGAAATGGAGTCTATCTCATGCTGATGGTACCAAACCTCCTCCTCG-CAATTTGAGGTAACCAAATTCGAATCAATGAATTTCTTTGTTTTATAGCAAAAGATTGAAACTTTTGATATGGGTTTTGTTGGTTGAATAGTAATTTCAGTTTAGATAGTTTGTAGGTTTGAGTTGTGTGCTGTGCACACTAAGCCTCTTGTGTTTAAGTGGAGAGGGTGGGCTTATTGTTCTTGTTTTCAAAGGTTGTAGTGTAAAAGAGGGGTTCTGTAGGTGATGATGACAAGCTAAAAATAGTTGAAACATGAGTGGAATTGATAAAAGAGGATTTATGTAGCAGGCAGATTGGTTTTGGGTTGATTGGGGTAGTATTTGAAAAAAGTTTCCATTTTATATGTTCATTGATTGGTGTAGGGATAGATCTTTTTGTAGTATGCTTTGTCATGGTTTCTTTTAGCATTTTGTCTCGACTTCTTTACTTCAGTTGTTTTCATTTTTCGAATTGTGTTGTAATGATTTTACTTGAGCTGAGGGTCTATGAGAAACAACATCATTATCCTTCCCAAACCCCACTTATGGAATTACACTTGGTATCTTATTCTTGTTGATTGATTAATTGGTGTAGTAATTTGAATGATTCTATTTTTATTTGTTCTTTTCTGTGGAAGTTGGTCTTATATTGAAGTTATTGGTTGATTGTGTTACTGTGGGTCAGTGAGGAGGACAGGAGGTGGTTCATGGAGGCTATGCAAGCTCAAACTGTTGATGTGATTAAGAGAATGAAGGAGATTACACTTGTCATGCAAACACCAGAGCAGGTTTTGGAATCACAGGGGGTGACTTCCCAAGATATTGAAGGTACTTGTTTAGTTTTTCTTGATAATGTGTAATCATATTTTATGAATTTTACTCGTTTTGACTTTTTTGCTGGCCTTGTGATTTCACAGATATGCTGGATGAGCTACAAGAACATGTCGAATCAATTGATATGGCTAATGGTGAGTTCTTGGTGTAATTTAGTTATTCAGAAATGTGTGTGTATCATGATTTGGTAGTTACGCATATTACATAATTCTTGCTAACCAGCTAATTTGGAATTGAGGTCTTGTTGTGGAAGCTCTATCTGTTAGAGTGTCCCACATTAGTTGAGGGAATAGATTGTTGTCTCCTTATAGTATTGGACAATTCTTGTCACATGAGCTAGCTTTTGTTGTTGATTTAGGCCCAATTCTTGTCTCCATTTCTTAATATGGAGTTAGAGCTGCATCAGTATTTTCTTAGTTTACTGAATACTAGGCCCAATGTTAAATTGTTCATGCTCTGGTTATCTACTCTCGGTTATCAGAGGAGACTTAACATCTCACATTGTTTGAAAGAATGACCCCTTGTCTTTTATATATTTTTTGCTCAATCCTCACCTCTTAAGCTAGCTTTTGGGGTCCAGTGCCCAAGGCCAATTCACTTGATAATATCATGTAGGTTTAATTGAAGTTTCCAATGTTGCACGTCATGTGCTTGAACTTCGCCACATTCAAAATCACTGTATTTAAGTGGACGAGAGTAGAGGCGCGTACCAATTATTGCCTAGTTATGAGCCGGCCCTCGGAATTTCTCGGCAATTAAAACAAAATTGTCCTGATCAAAGAGTAGTTTCATTGGTTATATGAGTTCATTCTTTTGCTGTTCTTTGACAAAGGTAGTCTGTAGTTCATATCATTGTGTTCATCTAGGAGCCAAGATTGTAATTATTTCCTGTTTTGTGAAGTGTGACCTGACAAGCATCCTGTATTTCTGTGAGTAGATACTGACCAGCATGCATGTTGGATACTCCATAAATAGTGCATATTTGAAGAATCCGACACGGGTGCAACAACATTTTTGGAGAGTTTGAGCAACATAGTTCTGCAATGGTTTTTTCTTAGACTGAAGAATTTTTGTTCTGTCTCAAAATTGCAGTAATGATATTGCTCTCATCTTTTACCTATGATAAATTCAACGACGTACATCCACTCATTTCAAGGAAAACCATGTGAGAATAGGTGCTCAGTAAAGTTATGCAACTTCATGATAATCTCTATTGAAGATGTTTGTGCTCCATAATCACATATTCAAACAAATAAAAACCTCAGTCACACATATCCTCTTTGATGTTGCTCCTGATTTCCAGATGTTTATCTCTGGTTCCTAGTTATTGTAATTGGTTGTGTTCAGATAATAATTACTTGTTGAAAAACAAAAAATGAAGCATATTAGACCAAGCTGACACTATTAAGTATTCCATAATATACATCACTCTGATCCTCCATCATGCCTTTTTCCGTCATAAGCTTAATTCTGATAATTTATGTCAGCAGTCACAATTTTCTTTTAATATGTATTTCGTATGAATGTACTCTTGGTGTTATTGTGATTTGTGCTCTACATTATGAGGTCCTTGAGACTTCTAGTCAACCTAGAAGTAAAGAAAGAAAGGTCTACCAAGTAGAAAAGAAATAAATGAAGAGGTTTCTCGTTTACTTTGGTATGAATCAGTTAAGGGGCTTTCATGAGCATGAAGAGAATGGGTATATCCTACAGTTTGAGATGTTTTTACTCTGTTGCCTCTTTAAGAGCTTGGTAACTGGTTGCTTCCTTGAATTGAATGGAACACTTCAGAACAAGGCCTCCAAGAGTATCTAAGAGTATGGAACAAAGTAAAAAACATGTAATCTCTCATCCTTTACAGCATTAATGTTAAACTGGAATGCCTATGACTAAGCTATAACGGATATCAAGAGCCACTCGAACCTGGTAGGCCGTATTCCATGGTTACTGCTGGAAACTAGAAAAAGAGAAGAGGACCAGAAAGACCTGGGGGAAGTGGTCTATACTTTGTTAGTGTTACTGGCTCATAGGTAATCTTTACTATCAGCACTTGGACATTCCGCTCTTTGTGTCCTTTCCCTCCTCATTCCTTGGGGATTTCGTTCTCTTTACTTGCTTTGTTGTCATTTTCTGTTTGAGCTTTCAATATTTAATTATGTGGTATTCCCATTATTAAAAGTTTTAGTCTTATGCTCGATTTCTTTTATTGTTATTCGGCAGATCTGAATTCAATTGGTGGATTGGTGCCTCTTCTTGGTTACTTAAAGAACTCCCATGCAAACATTAGAGCCAAAGCGGCAGAAGTCGTAAGTACAATTGTTCAGAACAACCCGAGGAGCCAACAACTGGTAATGGAAGCTAATGGCCTAGAACCCCTTCTGTCAAATTTTACCTCAGATCCTGATGTTACTGCCCGCACTAAAGCTCTTGGTGCAATTTCATGTGAGTACTTTCCCCGTTATGATTTATTAGTTAAGTGTGCCCTTTAAATTTTGGTGTCATGTCATCTGTGTTTTCCAGTAGCGTTGATCAACTAGTTTTTTTATTTTTCCTTTATTCCAGCTTTAATTAGGCACAACAAGCCTGCCATTGCTGCATTTCGTCTTGCAAATGG-TTATGC-AGGTTTAAGAGA-TGCTTTGA</genome_strand>
        <mrna_strand>CGAAATCAAAAATGGCGAAAGAAGGACCTAATTGGGATGGTTTATTGAAATGGAGTCTATCTCATGCTGATGGTACCAATCCTCCTTCTCGACAATTTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGAGGACAGGAGGTGGTTCATGGAGGCTATGCAATCTCAAACTGTTGATGTAATAAAGAGAATGAAGGAGATTACACTTGTCATGCAAACACCAGAGCAGGTTTTGGAATCACAGGGAGTGACTTCCCAAGATATTGAAG.........................................................................................ATATGCTGGATGAGCTACAAGAACATGTTGAATCAATTGACATGGCTAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGAACTCAATTGGTGGATTGGTGCCTCTTCTTGGTTACTTAAAGAACTCCCATGGAAACATTAGAGCCAAAGCGGCAGAAGTTGTAAGTACAATTGTTCAGAACAACCCGAGGAGCCAACAGCTGGTAATGGAAGCTAATGGCCTAGAACCTCTTCTGTCAAATTTCACCTCAGATCCTGATGTTACTGCCCGCACTAAAGCTCTTGGTGCAATTTCAT........................................................................................................................CTTTAATCAGGCACAACAAGCCTGCCATTGCTGCATTTCGTCTTGCAAATGGTTTATGCAAGCTTTAAGAGATTGCTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E208597" ref_strand="+" ref_description="SGN-E208597 [cLEC-39-P22]">
      <seq>gaaatcaaaaatggcgaaagagggacctaattgggatggtttattgaaatggagtctatctcatgctgatggtaccaaacctcctcctcgcaatttgagtgaggaggacaggaggtggttcatggaggctatgcaagctcaaactgttgatgtgattaagagaatgaaggagattacacttgtcatgcaaacaccagagcaggttttggaatcacagggggtgacttcccaagatattgaagatatgctggatgagctacaagaacatgtcgaatcaattgatatggctaatgatctgaattcaattggtggattggtgcctcttcttggttacttaaagaactcccatgcaaacattagagccaaagcggcagaagtcgtaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="79690" stop="83503"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79990" g_stop="80088" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80089" i_stop="80743" i_length="655">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80744" g_stop="80886" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="242" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80887" i_stop="80975" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80976" g_stop="81026" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="293" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81027" i_stop="83112" i_length="2086">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83113" g_stop="83203" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="384" r_length="91" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E208597" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208597" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79990" e_stop="80088"/>
          <exon e_start="80744" e_stop="80886"/>
          <exon e_start="80976" e_stop="81026"/>
          <exon e_start="83113" e_stop="83203"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATCAAAAATGGCGAAAGAGGGACCTAATTGGGATGGTTTATTGAAATGGAGTCTATCTCATGCTGATGGTACCAAACCTCCTCCTCGCAATTTGAGGTAACCAAATTCGAATCAATGAATTTCTTTGTTTTATAGCAAAAGATTGAAACTTTTGATATGGGTTTTGTTGGTTGAATAGTAATTTCAGTTTAGATAGTTTGTAGGTTTGAGTTGTGTGCTGTGCACACTAAGCCTCTTGTGTTTAAGTGGAGAGGGTGGGCTTATTGTTCTTGTTTTCAAAGGTTGTAGTGTAAAAGAGGGGTTCTGTAGGTGATGATGACAAGCTAAAAATAGTTGAAACATGAGTGGAATTGATAAAAGAGGATTTATGTAGCAGGCAGATTGGTTTTGGGTTGATTGGGGTAGTATTTGAAAAAAGTTTCCATTTTATATGTTCATTGATTGGTGTAGGGATAGATCTTTTTGTAGTATGCTTTGTCATGGTTTCTTTTAGCATTTTGTCTCGACTTCTTTACTTCAGTTGTTTTCATTTTTCGAATTGTGTTGTAATGATTTTACTTGAGCTGAGGGTCTATGAGAAACAACATCATTATCCTTCCCAAACCCCACTTATGGAATTACACTTGGTATCTTATTCTTGTTGATTGATTAATTGGTGTAGTAATTTGAATGATTCTATTTTTATTTGTTCTTTTCTGTGGAAGTTGGTCTTATATTGAAGTTATTGGTTGATTGTGTTACTGTGGGTCAGTGAGGAGGACAGGAGGTGGTTCATGGAGGCTATGCAAGCTCAAACTGTTGATGTGATTAAGAGAATGAAGGAGATTACACTTGTCATGCAAACACCAGAGCAGGTTTTGGAATCACAGGGGGTGACTTCCCAAGATATTGAAGGTACTTGTTTAGTTTTTCTTGATAATGTGTAATCATATTTTATGAATTTTACTCGTTTTGACTTTTTTGCTGGCCTTGTGATTTCACAGATATGCTGGATGAGCTACAAGAACATGTCGAATCAATTGATATGGCTAATGGTGAGTTCTTGGTGTAATTTAGTTATTCAGAAATGTGTGTGTATCATGATTTGGTAGTTACGCATATTACATAATTCTTGCTAACCAGCTAATTTGGAATTGAGGTCTTGTTGTGGAAGCTCTATCTGTTAGAGTGTCCCACATTAGTTGAGGGAATAGATTGTTGTCTCCTTATAGTATTGGACAATTCTTGTCACATGAGCTAGCTTTTGTTGTTGATTTAGGCCCAATTCTTGTCTCCATTTCTTAATATGGAGTTAGAGCTGCATCAGTATTTTCTTAGTTTACTGAATACTAGGCCCAATGTTAAATTGTTCATGCTCTGGTTATCTACTCTCGGTTATCAGAGGAGACTTAACATCTCACATTGTTTGAAAGAATGACCCCTTGTCTTTTATATATTTTTTGCTCAATCCTCACCTCTTAAGCTAGCTTTTGGGGTCCAGTGCCCAAGGCCAATTCACTTGATAATATCATGTAGGTTTAATTGAAGTTTCCAATGTTGCACGTCATGTGCTTGAACTTCGCCACATTCAAAATCACTGTATTTAAGTGGACGAGAGTAGAGGCGCGTACCAATTATTGCCTAGTTATGAGCCGGCCCTCGGAATTTCTCGGCAATTAAAACAAAATTGTCCTGATCAAAGAGTAGTTTCATTGGTTATATGAGTTCATTCTTTTGCTGTTCTTTGACAAAGGTAGTCTGTAGTTCATATCATTGTGTTCATCTAGGAGCCAAGATTGTAATTATTTCCTGTTTTGTGAAGTGTGACCTGACAAGCATCCTGTATTTCTGTGAGTAGATACTGACCAGCATGCATGTTGGATACTCCATAAATAGTGCATATTTGAAGAATCCGACACGGGTGCAACAACATTTTTGGAGAGTTTGAGCAACATAGTTCTGCAATGGTTTTTTCTTAGACTGAAGAATTTTTGTTCTGTCTCAAAATTGCAGTAATGATATTGCTCTCATCTTTTACCTATGATAAATTCAACGACGTACATCCACTCATTTCAAGGAAAACCATGTGAGAATAGGTGCTCAGTAAAGTTATGCAACTTCATGATAATCTCTATTGAAGATGTTTGTGCTCCATAATCACATATTCAAACAAATAAAAACCTCAGTCACACATATCCTCTTTGATGTTGCTCCTGATTTCCAGATGTTTATCTCTGGTTCCTAGTTATTGTAATTGGTTGTGTTCAGATAATAATTACTTGTTGAAAAACAAAAAATGAAGCATATTAGACCAAGCTGACACTATTAAGTATTCCATAATATACATCACTCTGATCCTCCATCATGCCTTTTTCCGTCATAAGCTTAATTCTGATAATTTATGTCAGCAGTCACAATTTTCTTTTAATATGTATTTCGTATGAATGTACTCTTGGTGTTATTGTGATTTGTGCTCTACATTATGAGGTCCTTGAGACTTCTAGTCAACCTAGAAGTAAAGAAAGAAAGGTCTACCAAGTAGAAAAGAAATAAATGAAGAGGTTTCTCGTTTACTTTGGTATGAATCAGTTAAGGGGCTTTCATGAGCATGAAGAGAATGGGTATATCCTACAGTTTGAGATGTTTTTACTCTGTTGCCTCTTTAAGAGCTTGGTAACTGGTTGCTTCCTTGAATTGAATGGAACACTTCAGAACAAGGCCTCCAAGAGTATCTAAGAGTATGGAACAAAGTAAAAAACATGTAATCTCTCATCCTTTACAGCATTAATGTTAAACTGGAATGCCTATGACTAAGCTATAACGGATATCAAGAGCCACTCGAACCTGGTAGGCCGTATTCCATGGTTACTGCTGGAAACTAGAAAAAGAGAAGAGGACCAGAAAGACCTGGGGGAAGTGGTCTATACTTTGTTAGTGTTACTGGCTCATAGGTAATCTTTACTATCAGCACTTGGACATTCCGCTCTTTGTGTCCTTTCCCTCCTCATTCCTTGGGGATTTCGTTCTCTTTACTTGCTTTGTTGTCATTTTCTGTTTGAGCTTTCAATATTTAATTATGTGGTATTCCCATTATTAAAAGTTTTAGTCTTATGCTCGATTTCTTTTATTGTTATTCGGCAGATCTGAATTCAATTGGTGGATTGGTGCCTCTTCTTGGTTACTTAAAGAACTCCCATGCAAACATTAGAGCCAAAGCGGCAGAAGTCGTAAG</genome_strand>
        <mrna_strand>GAAATCAAAAATGGCGAAAGAGGGACCTAATTGGGATGGTTTATTGAAATGGAGTCTATCTCATGCTGATGGTACCAAACCTCCTCCTCGCAATTTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGAGGACAGGAGGTGGTTCATGGAGGCTATGCAAGCTCAAACTGTTGATGTGATTAAGAGAATGAAGGAGATTACACTTGTCATGCAAACACCAGAGCAGGTTTTGGAATCACAGGGGGTGACTTCCCAAGATATTGAAG.........................................................................................ATATGCTGGATGAGCTACAAGAACATGTCGAATCAATTGATATGGCTAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGAATTCAATTGGTGGATTGGTGCCTCTTCTTGGTTACTTAAAGAACTCCCATGCAAACATTAGAGCCAAAGCGGCAGAAGTCGTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E256610" ref_strand="+" ref_description="SGN-E256610 [cLEG-38-B6]">
      <seq>aatggcgaaagagggacctaattgggatggtttattgaaggggagtctatctcatgctgatggtaccaaacctcctcctcgcaatttgagtgaggaggacaggaggtggttcatggaggctatgcaagctcaaactgttgatgtgattaagagaatgaaggagattacacttgtcatgcaaacaccagagcaggttttggaatcacagggggtgacttcccaagatattgaagatatgctggatgagctacaagaacatgtcgaatcaattgatatggctaatgatctgaattcaattggtggattggtgcctcttcttggttacttaaagaactcccatgcaaacattagagccaaagcggcagaagtcgtaagtacaattgttcagaacaacccgaggagccaacaactggtaatggaagctaatggcctagaaccccttctgtcaaattttacctcagatcctgatgttactgcccgcactaaagctcttggtgcaatttcatctttaattaggcacaacaagcctgccattgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="79699" stop="83786"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79999" g_stop="80088" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80089" i_stop="80743" i_length="655">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80744" g_stop="80886" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="233" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80887" i_stop="80975" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80976" g_stop="81026" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="284" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81027" i_stop="83112" i_length="2086">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83113" g_stop="83334" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="506" r_length="222" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83335" i_stop="83454" i_length="120">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="83455" g_stop="83486" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="538" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E256610" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256610" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79999" e_stop="80088"/>
          <exon e_start="80744" e_stop="80886"/>
          <exon e_start="80976" e_stop="81026"/>
          <exon e_start="83113" e_stop="83334"/>
          <exon e_start="83455" e_stop="83486"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGCGAAAGAGGGACCTAATTGGGATGGTTTATTGAAATGGAGTCTATCTCATGCTGATGGTACCAAACCTCCTCCTCGCAATTTGAGGTAACCAAATTCGAATCAATGAATTTCTTTGTTTTATAGCAAAAGATTGAAACTTTTGATATGGGTTTTGTTGGTTGAATAGTAATTTCAGTTTAGATAGTTTGTAGGTTTGAGTTGTGTGCTGTGCACACTAAGCCTCTTGTGTTTAAGTGGAGAGGGTGGGCTTATTGTTCTTGTTTTCAAAGGTTGTAGTGTAAAAGAGGGGTTCTGTAGGTGATGATGACAAGCTAAAAATAGTTGAAACATGAGTGGAATTGATAAAAGAGGATTTATGTAGCAGGCAGATTGGTTTTGGGTTGATTGGGGTAGTATTTGAAAAAAGTTTCCATTTTATATGTTCATTGATTGGTGTAGGGATAGATCTTTTTGTAGTATGCTTTGTCATGGTTTCTTTTAGCATTTTGTCTCGACTTCTTTACTTCAGTTGTTTTCATTTTTCGAATTGTGTTGTAATGATTTTACTTGAGCTGAGGGTCTATGAGAAACAACATCATTATCCTTCCCAAACCCCACTTATGGAATTACACTTGGTATCTTATTCTTGTTGATTGATTAATTGGTGTAGTAATTTGAATGATTCTATTTTTATTTGTTCTTTTCTGTGGAAGTTGGTCTTATATTGAAGTTATTGGTTGATTGTGTTACTGTGGGTCAGTGAGGAGGACAGGAGGTGGTTCATGGAGGCTATGCAAGCTCAAACTGTTGATGTGATTAAGAGAATGAAGGAGATTACACTTGTCATGCAAACACCAGAGCAGGTTTTGGAATCACAGGGGGTGACTTCCCAAGATATTGAAGGTACTTGTTTAGTTTTTCTTGATAATGTGTAATCATATTTTATGAATTTTACTCGTTTTGACTTTTTTGCTGGCCTTGTGATTTCACAGATATGCTGGATGAGCTACAAGAACATGTCGAATCAATTGATATGGCTAATGGTGAGTTCTTGGTGTAATTTAGTTATTCAGAAATGTGTGTGTATCATGATTTGGTAGTTACGCATATTACATAATTCTTGCTAACCAGCTAATTTGGAATTGAGGTCTTGTTGTGGAAGCTCTATCTGTTAGAGTGTCCCACATTAGTTGAGGGAATAGATTGTTGTCTCCTTATAGTATTGGACAATTCTTGTCACATGAGCTAGCTTTTGTTGTTGATTTAGGCCCAATTCTTGTCTCCATTTCTTAATATGGAGTTAGAGCTGCATCAGTATTTTCTTAGTTTACTGAATACTAGGCCCAATGTTAAATTGTTCATGCTCTGGTTATCTACTCTCGGTTATCAGAGGAGACTTAACATCTCACATTGTTTGAAAGAATGACCCCTTGTCTTTTATATATTTTTTGCTCAATCCTCACCTCTTAAGCTAGCTTTTGGGGTCCAGTGCCCAAGGCCAATTCACTTGATAATATCATGTAGGTTTAATTGAAGTTTCCAATGTTGCACGTCATGTGCTTGAACTTCGCCACATTCAAAATCACTGTATTTAAGTGGACGAGAGTAGAGGCGCGTACCAATTATTGCCTAGTTATGAGCCGGCCCTCGGAATTTCTCGGCAATTAAAACAAAATTGTCCTGATCAAAGAGTAGTTTCATTGGTTATATGAGTTCATTCTTTTGCTGTTCTTTGACAAAGGTAGTCTGTAGTTCATATCATTGTGTTCATCTAGGAGCCAAGATTGTAATTATTTCCTGTTTTGTGAAGTGTGACCTGACAAGCATCCTGTATTTCTGTGAGTAGATACTGACCAGCATGCATGTTGGATACTCCATAAATAGTGCATATTTGAAGAATCCGACACGGGTGCAACAACATTTTTGGAGAGTTTGAGCAACATAGTTCTGCAATGGTTTTTTCTTAGACTGAAGAATTTTTGTTCTGTCTCAAAATTGCAGTAATGATATTGCTCTCATCTTTTACCTATGATAAATTCAACGACGTACATCCACTCATTTCAAGGAAAACCATGTGAGAATAGGTGCTCAGTAAAGTTATGCAACTTCATGATAATCTCTATTGAAGATGTTTGTGCTCCATAATCACATATTCAAACAAATAAAAACCTCAGTCACACATATCCTCTTTGATGTTGCTCCTGATTTCCAGATGTTTATCTCTGGTTCCTAGTTATTGTAATTGGTTGTGTTCAGATAATAATTACTTGTTGAAAAACAAAAAATGAAGCATATTAGACCAAGCTGACACTATTAAGTATTCCATAATATACATCACTCTGATCCTCCATCATGCCTTTTTCCGTCATAAGCTTAATTCTGATAATTTATGTCAGCAGTCACAATTTTCTTTTAATATGTATTTCGTATGAATGTACTCTTGGTGTTATTGTGATTTGTGCTCTACATTATGAGGTCCTTGAGACTTCTAGTCAACCTAGAAGTAAAGAAAGAAAGGTCTACCAAGTAGAAAAGAAATAAATGAAGAGGTTTCTCGTTTACTTTGGTATGAATCAGTTAAGGGGCTTTCATGAGCATGAAGAGAATGGGTATATCCTACAGTTTGAGATGTTTTTACTCTGTTGCCTCTTTAAGAGCTTGGTAACTGGTTGCTTCCTTGAATTGAATGGAACACTTCAGAACAAGGCCTCCAAGAGTATCTAAGAGTATGGAACAAAGTAAAAAACATGTAATCTCTCATCCTTTACAGCATTAATGTTAAACTGGAATGCCTATGACTAAGCTATAACGGATATCAAGAGCCACTCGAACCTGGTAGGCCGTATTCCATGGTTACTGCTGGAAACTAGAAAAAGAGAAGAGGACCAGAAAGACCTGGGGGAAGTGGTCTATACTTTGTTAGTGTTACTGGCTCATAGGTAATCTTTACTATCAGCACTTGGACATTCCGCTCTTTGTGTCCTTTCCCTCCTCATTCCTTGGGGATTTCGTTCTCTTTACTTGCTTTGTTGTCATTTTCTGTTTGAGCTTTCAATATTTAATTATGTGGTATTCCCATTATTAAAAGTTTTAGTCTTATGCTCGATTTCTTTTATTGTTATTCGGCAGATCTGAATTCAATTGGTGGATTGGTGCCTCTTCTTGGTTACTTAAAGAACTCCCATGCAAACATTAGAGCCAAAGCGGCAGAAGTCGTAAGTACAATTGTTCAGAACAACCCGAGGAGCCAACAACTGGTAATGGAAGCTAATGGCCTAGAACCCCTTCTGTCAAATTTTACCTCAGATCCTGATGTTACTGCCCGCACTAAAGCTCTTGGTGCAATTTCATGTGAGTACTTTCCCCGTTATGATTTATTAGTTAAGTGTGCCCTTTAAATTTTGGTGTCATGTCATCTGTGTTTTCCAGTAGCGTTGATCAACTAGTTTTTTTATTTTTCCTTTATTCCAGCTTTAATTAGGCACAACAAGCCTGCCATTGCT</genome_strand>
        <mrna_strand>AATGGCGAAAGAGGGACCTAATTGGGATGGTTTATTGAAGGGGAGTCTATCTCATGCTGATGGTACCAAACCTCCTCCTCGCAATTTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGAGGACAGGAGGTGGTTCATGGAGGCTATGCAAGCTCAAACTGTTGATGTGATTAAGAGAATGAAGGAGATTACACTTGTCATGCAAACACCAGAGCAGGTTTTGGAATCACAGGGGGTGACTTCCCAAGATATTGAAG.........................................................................................ATATGCTGGATGAGCTACAAGAACATGTCGAATCAATTGATATGGCTAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGAATTCAATTGGTGGATTGGTGCCTCTTCTTGGTTACTTAAAGAACTCCCATGCAAACATTAGAGCCAAAGCGGCAGAAGTCGTAAGTACAATTGTTCAGAACAACCCGAGGAGCCAACAACTGGTAATGGAAGCTAATGGCCTAGAACCCCTTCTGTCAAATTTTACCTCAGATCCTGATGTTACTGCCCGCACTAAAGCTCTTGGTGCAATTTCAT........................................................................................................................CTTTAATTAGGCACAACAAGCCTGCCATTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E205616" ref_strand="+" ref_description="SGN-E205616 [cLEC-21-H21]">
      <seq>aagagggacctaattgggatggtttattgaaatggagtctatctcatgctgatggtaccaaacctcctcctcgcaatttgagtgaggaggacaggaggtggttcatggaggctatgcaagctcaaactgttgatgtgattaagagaatgaaggagattacacttgtcatgcaaacaccagagcaggttttggaatcacagggggtgacttcccaagatattgaagatatgctggatgagctacaagaacatgtcgaatcaattgatatggctaatgatctgaattcaattggtggattggtgcctcttcttggttacttaaagaactcccatgcaaacattagagccaaagcggcagaagtcgtaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="79707" stop="83503"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80007" g_stop="80088" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80089" i_stop="80743" i_length="655">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80744" g_stop="80886" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="225" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80887" i_stop="80975" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80976" g_stop="81026" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="276" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81027" i_stop="83112" i_length="2086">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83113" g_stop="83203" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="367" r_length="91" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E205616" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>367</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205616" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80007" e_stop="80088"/>
          <exon e_start="80744" e_stop="80886"/>
          <exon e_start="80976" e_stop="81026"/>
          <exon e_start="83113" e_stop="83203"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGGGACCTAATTGGGATGGTTTATTGAAATGGAGTCTATCTCATGCTGATGGTACCAAACCTCCTCCTCGCAATTTGAGGTAACCAAATTCGAATCAATGAATTTCTTTGTTTTATAGCAAAAGATTGAAACTTTTGATATGGGTTTTGTTGGTTGAATAGTAATTTCAGTTTAGATAGTTTGTAGGTTTGAGTTGTGTGCTGTGCACACTAAGCCTCTTGTGTTTAAGTGGAGAGGGTGGGCTTATTGTTCTTGTTTTCAAAGGTTGTAGTGTAAAAGAGGGGTTCTGTAGGTGATGATGACAAGCTAAAAATAGTTGAAACATGAGTGGAATTGATAAAAGAGGATTTATGTAGCAGGCAGATTGGTTTTGGGTTGATTGGGGTAGTATTTGAAAAAAGTTTCCATTTTATATGTTCATTGATTGGTGTAGGGATAGATCTTTTTGTAGTATGCTTTGTCATGGTTTCTTTTAGCATTTTGTCTCGACTTCTTTACTTCAGTTGTTTTCATTTTTCGAATTGTGTTGTAATGATTTTACTTGAGCTGAGGGTCTATGAGAAACAACATCATTATCCTTCCCAAACCCCACTTATGGAATTACACTTGGTATCTTATTCTTGTTGATTGATTAATTGGTGTAGTAATTTGAATGATTCTATTTTTATTTGTTCTTTTCTGTGGAAGTTGGTCTTATATTGAAGTTATTGGTTGATTGTGTTACTGTGGGTCAGTGAGGAGGACAGGAGGTGGTTCATGGAGGCTATGCAAGCTCAAACTGTTGATGTGATTAAGAGAATGAAGGAGATTACACTTGTCATGCAAACACCAGAGCAGGTTTTGGAATCACAGGGGGTGACTTCCCAAGATATTGAAGGTACTTGTTTAGTTTTTCTTGATAATGTGTAATCATATTTTATGAATTTTACTCGTTTTGACTTTTTTGCTGGCCTTGTGATTTCACAGATATGCTGGATGAGCTACAAGAACATGTCGAATCAATTGATATGGCTAATGGTGAGTTCTTGGTGTAATTTAGTTATTCAGAAATGTGTGTGTATCATGATTTGGTAGTTACGCATATTACATAATTCTTGCTAACCAGCTAATTTGGAATTGAGGTCTTGTTGTGGAAGCTCTATCTGTTAGAGTGTCCCACATTAGTTGAGGGAATAGATTGTTGTCTCCTTATAGTATTGGACAATTCTTGTCACATGAGCTAGCTTTTGTTGTTGATTTAGGCCCAATTCTTGTCTCCATTTCTTAATATGGAGTTAGAGCTGCATCAGTATTTTCTTAGTTTACTGAATACTAGGCCCAATGTTAAATTGTTCATGCTCTGGTTATCTACTCTCGGTTATCAGAGGAGACTTAACATCTCACATTGTTTGAAAGAATGACCCCTTGTCTTTTATATATTTTTTGCTCAATCCTCACCTCTTAAGCTAGCTTTTGGGGTCCAGTGCCCAAGGCCAATTCACTTGATAATATCATGTAGGTTTAATTGAAGTTTCCAATGTTGCACGTCATGTGCTTGAACTTCGCCACATTCAAAATCACTGTATTTAAGTGGACGAGAGTAGAGGCGCGTACCAATTATTGCCTAGTTATGAGCCGGCCCTCGGAATTTCTCGGCAATTAAAACAAAATTGTCCTGATCAAAGAGTAGTTTCATTGGTTATATGAGTTCATTCTTTTGCTGTTCTTTGACAAAGGTAGTCTGTAGTTCATATCATTGTGTTCATCTAGGAGCCAAGATTGTAATTATTTCCTGTTTTGTGAAGTGTGACCTGACAAGCATCCTGTATTTCTGTGAGTAGATACTGACCAGCATGCATGTTGGATACTCCATAAATAGTGCATATTTGAAGAATCCGACACGGGTGCAACAACATTTTTGGAGAGTTTGAGCAACATAGTTCTGCAATGGTTTTTTCTTAGACTGAAGAATTTTTGTTCTGTCTCAAAATTGCAGTAATGATATTGCTCTCATCTTTTACCTATGATAAATTCAACGACGTACATCCACTCATTTCAAGGAAAACCATGTGAGAATAGGTGCTCAGTAAAGTTATGCAACTTCATGATAATCTCTATTGAAGATGTTTGTGCTCCATAATCACATATTCAAACAAATAAAAACCTCAGTCACACATATCCTCTTTGATGTTGCTCCTGATTTCCAGATGTTTATCTCTGGTTCCTAGTTATTGTAATTGGTTGTGTTCAGATAATAATTACTTGTTGAAAAACAAAAAATGAAGCATATTAGACCAAGCTGACACTATTAAGTATTCCATAATATACATCACTCTGATCCTCCATCATGCCTTTTTCCGTCATAAGCTTAATTCTGATAATTTATGTCAGCAGTCACAATTTTCTTTTAATATGTATTTCGTATGAATGTACTCTTGGTGTTATTGTGATTTGTGCTCTACATTATGAGGTCCTTGAGACTTCTAGTCAACCTAGAAGTAAAGAAAGAAAGGTCTACCAAGTAGAAAAGAAATAAATGAAGAGGTTTCTCGTTTACTTTGGTATGAATCAGTTAAGGGGCTTTCATGAGCATGAAGAGAATGGGTATATCCTACAGTTTGAGATGTTTTTACTCTGTTGCCTCTTTAAGAGCTTGGTAACTGGTTGCTTCCTTGAATTGAATGGAACACTTCAGAACAAGGCCTCCAAGAGTATCTAAGAGTATGGAACAAAGTAAAAAACATGTAATCTCTCATCCTTTACAGCATTAATGTTAAACTGGAATGCCTATGACTAAGCTATAACGGATATCAAGAGCCACTCGAACCTGGTAGGCCGTATTCCATGGTTACTGCTGGAAACTAGAAAAAGAGAAGAGGACCAGAAAGACCTGGGGGAAGTGGTCTATACTTTGTTAGTGTTACTGGCTCATAGGTAATCTTTACTATCAGCACTTGGACATTCCGCTCTTTGTGTCCTTTCCCTCCTCATTCCTTGGGGATTTCGTTCTCTTTACTTGCTTTGTTGTCATTTTCTGTTTGAGCTTTCAATATTTAATTATGTGGTATTCCCATTATTAAAAGTTTTAGTCTTATGCTCGATTTCTTTTATTGTTATTCGGCAGATCTGAATTCAATTGGTGGATTGGTGCCTCTTCTTGGTTACTTAAAGAACTCCCATGCAAACATTAGAGCCAAAGCGGCAGAAGTCGTAAG</genome_strand>
        <mrna_strand>AAGAGGGACCTAATTGGGATGGTTTATTGAAATGGAGTCTATCTCATGCTGATGGTACCAAACCTCCTCCTCGCAATTTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGAGGACAGGAGGTGGTTCATGGAGGCTATGCAAGCTCAAACTGTTGATGTGATTAAGAGAATGAAGGAGATTACACTTGTCATGCAAACACCAGAGCAGGTTTTGGAATCACAGGGGGTGACTTCCCAAGATATTGAAG.........................................................................................ATATGCTGGATGAGCTACAAGAACATGTCGAATCAATTGATATGGCTAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGAATTCAATTGGTGGATTGGTGCCTCTTCTTGGTTACTTAAAGAACTCCCATGCAAACATTAGAGCCAAAGCGGCAGAAGTCGTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E459738" ref_strand="+" ref_description="SGN-E459738 [cPRO-28-D20]">
      <seq>aattgggatggtttattgaaatggagtctatctcatgctgatggtaccaatcatccttctcgcaatttgagtgaggaggacaggaggtggttcatggaggctatgcaagctcaaactgttgatgttataaagagaatgaaggagattacacttgtcatgcaaacaccagagcaggttttggaatcgcagggagtgacttcccaagatattgaagatatgctggatgagctacaagaacatgttgaatcaattgacatggctaatgatctgaactcaattggtggattggtgcctcttcttggttacttaaagaactcccatgcaaacattagagccaaagcggcagaagttgtaagtacaattgttcagaacaacccgaggagccaacagctggtaatggaggctaatggcctagaacctcttctgtcaaatttcacctcagatcctgatgttactgcccgcactaaagctcttggtgcaatttcatctttaatcaggcacaacaagcctgccattgctgcatttcgtcttgcaaatggttatgcagctttaagagatgctttgagttcggagaatgtgagatttcaaaggaaagcccttaacgtgatccattatttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="79718" stop="83860"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80018" g_stop="80088" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80089" i_stop="80743" i_length="655">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80744" g_stop="80886" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="214" r_length="143" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80887" i_stop="80975" i_length="89">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80976" g_stop="81026" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="265" r_length="51" r_score="0.961"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81027" i_stop="83112" i_length="2086">
            <donor d_prob="0.985" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83113" g_stop="83334" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="487" r_length="222" r_score="0.973"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83335" i_stop="83454" i_length="120">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="83455" g_stop="83557" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="590" r_length="103" r_score="0.951"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="83558" i_stop="83679" i_length="122">
            <donor d_prob="0.700" d_score="0.92"/>
            <acceptor a_prob="0.925" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="83680" g_stop="83708" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="591" r_stop="619" r_length="29" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E459738" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E459738" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80018" e_stop="80088"/>
          <exon e_start="80744" e_stop="80886"/>
          <exon e_start="80976" e_stop="81026"/>
          <exon e_start="83113" e_stop="83334"/>
          <exon e_start="83455" e_stop="83557"/>
          <exon e_start="83680" e_stop="83708"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGGGATGGTTTATTGAAATGGAGTCTATCTCATGCTGATGGTACCAAACCTCCTCCTCGCAATTTGAGGTAACCAAATTCGAATCAATGAATTTCTTTGTTTTATAGCAAAAGATTGAAACTTTTGATATGGGTTTTGTTGGTTGAATAGTAATTTCAGTTTAGATAGTTTGTAGGTTTGAGTTGTGTGCTGTGCACACTAAGCCTCTTGTGTTTAAGTGGAGAGGGTGGGCTTATTGTTCTTGTTTTCAAAGGTTGTAGTGTAAAAGAGGGGTTCTGTAGGTGATGATGACAAGCTAAAAATAGTTGAAACATGAGTGGAATTGATAAAAGAGGATTTATGTAGCAGGCAGATTGGTTTTGGGTTGATTGGGGTAGTATTTGAAAAAAGTTTCCATTTTATATGTTCATTGATTGGTGTAGGGATAGATCTTTTTGTAGTATGCTTTGTCATGGTTTCTTTTAGCATTTTGTCTCGACTTCTTTACTTCAGTTGTTTTCATTTTTCGAATTGTGTTGTAATGATTTTACTTGAGCTGAGGGTCTATGAGAAACAACATCATTATCCTTCCCAAACCCCACTTATGGAATTACACTTGGTATCTTATTCTTGTTGATTGATTAATTGGTGTAGTAATTTGAATGATTCTATTTTTATTTGTTCTTTTCTGTGGAAGTTGGTCTTATATTGAAGTTATTGGTTGATTGTGTTACTGTGGGTCAGTGAGGAGGACAGGAGGTGGTTCATGGAGGCTATGCAAGCTCAAACTGTTGATGTGATTAAGAGAATGAAGGAGATTACACTTGTCATGCAAACACCAGAGCAGGTTTTGGAATCACAGGGGGTGACTTCCCAAGATATTGAAGGTACTTGTTTAGTTTTTCTTGATAATGTGTAATCATATTTTATGAATTTTACTCGTTTTGACTTTTTTGCTGGCCTTGTGATTTCACAGATATGCTGGATGAGCTACAAGAACATGTCGAATCAATTGATATGGCTAATGGTGAGTTCTTGGTGTAATTTAGTTATTCAGAAATGTGTGTGTATCATGATTTGGTAGTTACGCATATTACATAATTCTTGCTAACCAGCTAATTTGGAATTGAGGTCTTGTTGTGGAAGCTCTATCTGTTAGAGTGTCCCACATTAGTTGAGGGAATAGATTGTTGTCTCCTTATAGTATTGGACAATTCTTGTCACATGAGCTAGCTTTTGTTGTTGATTTAGGCCCAATTCTTGTCTCCATTTCTTAATATGGAGTTAGAGCTGCATCAGTATTTTCTTAGTTTACTGAATACTAGGCCCAATGTTAAATTGTTCATGCTCTGGTTATCTACTCTCGGTTATCAGAGGAGACTTAACATCTCACATTGTTTGAAAGAATGACCCCTTGTCTTTTATATATTTTTTGCTCAATCCTCACCTCTTAAGCTAGCTTTTGGGGTCCAGTGCCCAAGGCCAATTCACTTGATAATATCATGTAGGTTTAATTGAAGTTTCCAATGTTGCACGTCATGTGCTTGAACTTCGCCACATTCAAAATCACTGTATTTAAGTGGACGAGAGTAGAGGCGCGTACCAATTATTGCCTAGTTATGAGCCGGCCCTCGGAATTTCTCGGCAATTAAAACAAAATTGTCCTGATCAAAGAGTAGTTTCATTGGTTATATGAGTTCATTCTTTTGCTGTTCTTTGACAAAGGTAGTCTGTAGTTCATATCATTGTGTTCATCTAGGAGCCAAGATTGTAATTATTTCCTGTTTTGTGAAGTGTGACCTGACAAGCATCCTGTATTTCTGTGAGTAGATACTGACCAGCATGCATGTTGGATACTCCATAAATAGTGCATATTTGAAGAATCCGACACGGGTGCAACAACATTTTTGGAGAGTTTGAGCAACATAGTTCTGCAATGGTTTTTTCTTAGACTGAAGAATTTTTGTTCTGTCTCAAAATTGCAGTAATGATATTGCTCTCATCTTTTACCTATGATAAATTCAACGACGTACATCCACTCATTTCAAGGAAAACCATGTGAGAATAGGTGCTCAGTAAAGTTATGCAACTTCATGATAATCTCTATTGAAGATGTTTGTGCTCCATAATCACATATTCAAACAAATAAAAACCTCAGTCACACATATCCTCTTTGATGTTGCTCCTGATTTCCAGATGTTTATCTCTGGTTCCTAGTTATTGTAATTGGTTGTGTTCAGATAATAATTACTTGTTGAAAAACAAAAAATGAAGCATATTAGACCAAGCTGACACTATTAAGTATTCCATAATATACATCACTCTGATCCTCCATCATGCCTTTTTCCGTCATAAGCTTAATTCTGATAATTTATGTCAGCAGTCACAATTTTCTTTTAATATGTATTTCGTATGAATGTACTCTTGGTGTTATTGTGATTTGTGCTCTACATTATGAGGTCCTTGAGACTTCTAGTCAACCTAGAAGTAAAGAAAGAAAGGTCTACCAAGTAGAAAAGAAATAAATGAAGAGGTTTCTCGTTTACTTTGGTATGAATCAGTTAAGGGGCTTTCATGAGCATGAAGAGAATGGGTATATCCTACAGTTTGAGATGTTTTTACTCTGTTGCCTCTTTAAGAGCTTGGTAACTGGTTGCTTCCTTGAATTGAATGGAACACTTCAGAACAAGGCCTCCAAGAGTATCTAAGAGTATGGAACAAAGTAAAAAACATGTAATCTCTCATCCTTTACAGCATTAATGTTAAACTGGAATGCCTATGACTAAGCTATAACGGATATCAAGAGCCACTCGAACCTGGTAGGCCGTATTCCATGGTTACTGCTGGAAACTAGAAAAAGAGAAGAGGACCAGAAAGACCTGGGGGAAGTGGTCTATACTTTGTTAGTGTTACTGGCTCATAGGTAATCTTTACTATCAGCACTTGGACATTCCGCTCTTTGTGTCCTTTCCCTCCTCATTCCTTGGGGATTTCGTTCTCTTTACTTGCTTTGTTGTCATTTTCTGTTTGAGCTTTCAATATTTAATTATGTGGTATTCCCATTATTAAAAGTTTTAGTCTTATGCTCGATTTCTTTTATTGTTATTCGGCAGATCTGAATTCAATTGGTGGATTGGTGCCTCTTCTTGGTTACTTAAAGAACTCCCATGCAAACATTAGAGCCAAAGCGGCAGAAGTCGTAAGTACAATTGTTCAGAACAACCCGAGGAGCCAACAACTGGTAATGGAAGCTAATGGCCTAGAACCCCTTCTGTCAAATTTTACCTCAGATCCTGATGTTACTGCCCGCACTAAAGCTCTTGGTGCAATTTCATGTGAGTACTTTCCCCGTTATGATTTATTAGTTAAGTGTGCCCTTTAAATTTTGGTGTCATGTCATCTGTGTTTTCCAGTAGCGTTGATCAACTAGTTTTTTTATTTTTCCTTTATTCCAGCTTTAATTAGGCACAACAAGCCTGCCATTGCTGCATTTCGTCTTGCAAATGGTTATGCAGGTTTAAGAGATGCTTTGAGTTCTGAGAGTGTGAGATTTCAGAGGTACTATTTTCTATATCATGCACTAGACGTTTCTGAATCAACCATTGATGAAGCTGCTGCTTTCCCGTAAACCTTCCTCTTTTATATTCCTTTCTAATAGGTATAGTCCTGTTCTTTTGCAGGAAAGCCCTTAACTTGATCCATTATTTAC</genome_strand>
        <mrna_strand>AATTGGGATGGTTTATTGAAATGGAGTCTATCTCATGCTGATGGTACCAATCATCCTTCTCGCAATTTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGAGGACAGGAGGTGGTTCATGGAGGCTATGCAAGCTCAAACTGTTGATGTTATAAAGAGAATGAAGGAGATTACACTTGTCATGCAAACACCAGAGCAGGTTTTGGAATCGCAGGGAGTGACTTCCCAAGATATTGAAG.........................................................................................ATATGCTGGATGAGCTACAAGAACATGTTGAATCAATTGACATGGCTAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGAACTCAATTGGTGGATTGGTGCCTCTTCTTGGTTACTTAAAGAACTCCCATGCAAACATTAGAGCCAAAGCGGCAGAAGTTGTAAGTACAATTGTTCAGAACAACCCGAGGAGCCAACAGCTGGTAATGGAGGCTAATGGCCTAGAACCTCTTCTGTCAAATTTCACCTCAGATCCTGATGTTACTGCCCGCACTAAAGCTCTTGGTGCAATTTCAT........................................................................................................................CTTTAATCAGGCACAACAAGCCTGCCATTGCTGCATTTCGTCTTGCAAATGGTTATGCAGCTTTAAGAGATGCTTTGAGTTCGGAGAATGTGAGATTTCAAAG..........................................................................................................................GAAAGCCCTTAACGTGATCCATTATTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E248624" ref_strand="+" ref_description="SGN-E248624 [cLEF-58-C12]">
      <seq>atggtttattgaaatggagtctatctcatgctgatggtaccaaacctcctcctcgcaatttgagtgaggaggacaggaggtggttcatggaggctatgcaagctcaaactgttgatgtgattaagagaatgaaggagattacacttgtcatgcaaacaccagagcaggttttggaatcacagggggtgacttcccaagatattgaagatatgctggatgagctacaagaacatgtcgaatcaattgatatggctaatggtgagttcttggtgtaatttagttattcagaaatgtgtgtgtatcatgatttggtagttacgcatattacataattcttgctaaccagctaatttggaattgaggtcttgttgtggaagctctatctgttagagtgtcccacattagttgagggaatagattgttgtctccttatagtattggacaattcttgtcacatgagctagcttttgttgttgatttaagcccaattcttgtctccatttcttaatatggagttagagctgcatcagtattttcttagtttactgaatactaagcccaatgttaaattgttcatgctctggttatctactctcggttatcagaggagacttaacatctcacattgtttgaaagaatgaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="79725" stop="81712"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80025" g_stop="80088" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80089" i_stop="80743" i_length="655">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80744" g_stop="80886" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="207" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80887" i_stop="80975" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80976" g_stop="81412" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="644" r_length="437" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E248624" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248624" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80025" e_stop="80088"/>
          <exon e_start="80744" e_stop="80886"/>
          <exon e_start="80976" e_stop="81412"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGTTTATTGAAATGGAGTCTATCTCATGCTGATGGTACCAAACCTCCTCCTCGCAATTTGAGGTAACCAAATTCGAATCAATGAATTTCTTTGTTTTATAGCAAAAGATTGAAACTTTTGATATGGGTTTTGTTGGTTGAATAGTAATTTCAGTTTAGATAGTTTGTAGGTTTGAGTTGTGTGCTGTGCACACTAAGCCTCTTGTGTTTAAGTGGAGAGGGTGGGCTTATTGTTCTTGTTTTCAAAGGTTGTAGTGTAAAAGAGGGGTTCTGTAGGTGATGATGACAAGCTAAAAATAGTTGAAACATGAGTGGAATTGATAAAAGAGGATTTATGTAGCAGGCAGATTGGTTTTGGGTTGATTGGGGTAGTATTTGAAAAAAGTTTCCATTTTATATGTTCATTGATTGGTGTAGGGATAGATCTTTTTGTAGTATGCTTTGTCATGGTTTCTTTTAGCATTTTGTCTCGACTTCTTTACTTCAGTTGTTTTCATTTTTCGAATTGTGTTGTAATGATTTTACTTGAGCTGAGGGTCTATGAGAAACAACATCATTATCCTTCCCAAACCCCACTTATGGAATTACACTTGGTATCTTATTCTTGTTGATTGATTAATTGGTGTAGTAATTTGAATGATTCTATTTTTATTTGTTCTTTTCTGTGGAAGTTGGTCTTATATTGAAGTTATTGGTTGATTGTGTTACTGTGGGTCAGTGAGGAGGACAGGAGGTGGTTCATGGAGGCTATGCAAGCTCAAACTGTTGATGTGATTAAGAGAATGAAGGAGATTACACTTGTCATGCAAACACCAGAGCAGGTTTTGGAATCACAGGGGGTGACTTCCCAAGATATTGAAGGTACTTGTTTAGTTTTTCTTGATAATGTGTAATCATATTTTATGAATTTTACTCGTTTTGACTTTTTTGCTGGCCTTGTGATTTCACAGATATGCTGGATGAGCTACAAGAACATGTCGAATCAATTGATATGGCTAATGGTGAGTTCTTGGTGTAATTTAGTTATTCAGAAATGTGTGTGTATCATGATTTGGTAGTTACGCATATTACATAATTCTTGCTAACCAGCTAATTTGGAATTGAGGTCTTGTTGTGGAAGCTCTATCTGTTAGAGTGTCCCACATTAGTTGAGGGAATAGATTGTTGTCTCCTTATAGTATTGGACAATTCTTGTCACATGAGCTAGCTTTTGTTGTTGATTTAGGCCCAATTCTTGTCTCCATTTCTTAATATGGAGTTAGAGCTGCATCAGTATTTTCTTAGTTTACTGAATACTAGGCCCAATGTTAAATTGTTCATGCTCTGGTTATCTACTCTCGGTTATCAGAGGAGACTTAACATCTCACATTGTTTGAAAGAATGACCC</genome_strand>
        <mrna_strand>ATGGTTTATTGAAATGGAGTCTATCTCATGCTGATGGTACCAAACCTCCTCCTCGCAATTTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGAGGACAGGAGGTGGTTCATGGAGGCTATGCAAGCTCAAACTGTTGATGTGATTAAGAGAATGAAGGAGATTACACTTGTCATGCAAACACCAGAGCAGGTTTTGGAATCACAGGGGGTGACTTCCCAAGATATTGAAG.........................................................................................ATATGCTGGATGAGCTACAAGAACATGTCGAATCAATTGATATGGCTAATGGTGAGTTCTTGGTGTAATTTAGTTATTCAGAAATGTGTGTGTATCATGATTTGGTAGTTACGCATATTACATAATTCTTGCTAACCAGCTAATTTGGAATTGAGGTCTTGTTGTGGAAGCTCTATCTGTTAGAGTGTCCCACATTAGTTGAGGGAATAGATTGTTGTCTCCTTATAGTATTGGACAATTCTTGTCACATGAGCTAGCTTTTGTTGTTGATTTAAGCCCAATTCTTGTCTCCATTTCTTAATATGGAGTTAGAGCTGCATCAGTATTTTCTTAGTTTACTGAATACTAAGCCCAATGTTAAATTGTTCATGCTCTGGTTATCTACTCTCGGTTATCAGAGGAGACTTAACATCTCACATTGTTTGAAAGAATGACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E479173" ref_strand="+" ref_description="SGN-E479173 [cSTD-8-P2]">
      <seq>ggtttattgaaatggagtctatctcatgctgatggtaccaatcctccttctcgcaatttgagtgaggaggacaggaggtggttcatggaggctatgcaagctcaaactgttgatgtaataaaaagaatgaaggagattacacttgtcatgcaaacaccagagcaggttttggaatcacagggagtgacttcccaagatattgaagatatgctggatgagctacaagaacatgttgaatcaattgacatggctaatgatctgaactcaattggtggattggtgcctcttcttggttacttaaagaactcccatgcaaacattagagccaaagcggcagaagttgtaagtacaattgttcagaacaacccgaggagccaacagctggtaatggaagctaatggcctagaacctcttctgtcaaatttcacctcagatcctgatgttactgcccgcacaaaagctcttggtgcaatttcatctttaatcaggcacaacaagcctgccattgctgcatttcgtcttgcaaatggttatgcagctttaagagatgctttgagttcggagaatgtgagatttcaaaggaaagcccttaacgtgatccattatttactgcaagaagatcattcagactgcaatgtagtgactgagctangatttcctcgagttatgatgcatctagcctctagtgatgatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="79727" stop="84093"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80027" g_stop="80088" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80089" i_stop="80743" i_length="655">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80744" g_stop="80886" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="205" r_length="143" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80887" i_stop="80975" i_length="89">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80976" g_stop="81026" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="256" r_length="51" r_score="0.961"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81027" i_stop="83112" i_length="2086">
            <donor d_prob="0.985" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83113" g_stop="83334" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="478" r_length="222" r_score="0.973"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83335" i_stop="83454" i_length="120">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="83455" g_stop="83557" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="581" r_length="103" r_score="0.951"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="83558" i_stop="83679" i_length="122">
            <donor d_prob="0.700" d_score="0.92"/>
            <acceptor a_prob="0.925" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="83680" g_stop="83793" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="582" r_stop="695" r_length="114" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E479173" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E479173" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80027" e_stop="80088"/>
          <exon e_start="80744" e_stop="80886"/>
          <exon e_start="80976" e_stop="81026"/>
          <exon e_start="83113" e_stop="83334"/>
          <exon e_start="83455" e_stop="83557"/>
          <exon e_start="83680" e_stop="83793"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTATTGAAATGGAGTCTATCTCATGCTGATGGTACCAAACCTCCTCCTCGCAATTTGAGGTAACCAAATTCGAATCAATGAATTTCTTTGTTTTATAGCAAAAGATTGAAACTTTTGATATGGGTTTTGTTGGTTGAATAGTAATTTCAGTTTAGATAGTTTGTAGGTTTGAGTTGTGTGCTGTGCACACTAAGCCTCTTGTGTTTAAGTGGAGAGGGTGGGCTTATTGTTCTTGTTTTCAAAGGTTGTAGTGTAAAAGAGGGGTTCTGTAGGTGATGATGACAAGCTAAAAATAGTTGAAACATGAGTGGAATTGATAAAAGAGGATTTATGTAGCAGGCAGATTGGTTTTGGGTTGATTGGGGTAGTATTTGAAAAAAGTTTCCATTTTATATGTTCATTGATTGGTGTAGGGATAGATCTTTTTGTAGTATGCTTTGTCATGGTTTCTTTTAGCATTTTGTCTCGACTTCTTTACTTCAGTTGTTTTCATTTTTCGAATTGTGTTGTAATGATTTTACTTGAGCTGAGGGTCTATGAGAAACAACATCATTATCCTTCCCAAACCCCACTTATGGAATTACACTTGGTATCTTATTCTTGTTGATTGATTAATTGGTGTAGTAATTTGAATGATTCTATTTTTATTTGTTCTTTTCTGTGGAAGTTGGTCTTATATTGAAGTTATTGGTTGATTGTGTTACTGTGGGTCAGTGAGGAGGACAGGAGGTGGTTCATGGAGGCTATGCAAGCTCAAACTGTTGATGTGATTAAGAGAATGAAGGAGATTACACTTGTCATGCAAACACCAGAGCAGGTTTTGGAATCACAGGGGGTGACTTCCCAAGATATTGAAGGTACTTGTTTAGTTTTTCTTGATAATGTGTAATCATATTTTATGAATTTTACTCGTTTTGACTTTTTTGCTGGCCTTGTGATTTCACAGATATGCTGGATGAGCTACAAGAACATGTCGAATCAATTGATATGGCTAATGGTGAGTTCTTGGTGTAATTTAGTTATTCAGAAATGTGTGTGTATCATGATTTGGTAGTTACGCATATTACATAATTCTTGCTAACCAGCTAATTTGGAATTGAGGTCTTGTTGTGGAAGCTCTATCTGTTAGAGTGTCCCACATTAGTTGAGGGAATAGATTGTTGTCTCCTTATAGTATTGGACAATTCTTGTCACATGAGCTAGCTTTTGTTGTTGATTTAGGCCCAATTCTTGTCTCCATTTCTTAATATGGAGTTAGAGCTGCATCAGTATTTTCTTAGTTTACTGAATACTAGGCCCAATGTTAAATTGTTCATGCTCTGGTTATCTACTCTCGGTTATCAGAGGAGACTTAACATCTCACATTGTTTGAAAGAATGACCCCTTGTCTTTTATATATTTTTTGCTCAATCCTCACCTCTTAAGCTAGCTTTTGGGGTCCAGTGCCCAAGGCCAATTCACTTGATAATATCATGTAGGTTTAATTGAAGTTTCCAATGTTGCACGTCATGTGCTTGAACTTCGCCACATTCAAAATCACTGTATTTAAGTGGACGAGAGTAGAGGCGCGTACCAATTATTGCCTAGTTATGAGCCGGCCCTCGGAATTTCTCGGCAATTAAAACAAAATTGTCCTGATCAAAGAGTAGTTTCATTGGTTATATGAGTTCATTCTTTTGCTGTTCTTTGACAAAGGTAGTCTGTAGTTCATATCATTGTGTTCATCTAGGAGCCAAGATTGTAATTATTTCCTGTTTTGTGAAGTGTGACCTGACAAGCATCCTGTATTTCTGTGAGTAGATACTGACCAGCATGCATGTTGGATACTCCATAAATAGTGCATATTTGAAGAATCCGACACGGGTGCAACAACATTTTTGGAGAGTTTGAGCAACATAGTTCTGCAATGGTTTTTTCTTAGACTGAAGAATTTTTGTTCTGTCTCAAAATTGCAGTAATGATATTGCTCTCATCTTTTACCTATGATAAATTCAACGACGTACATCCACTCATTTCAAGGAAAACCATGTGAGAATAGGTGCTCAGTAAAGTTATGCAACTTCATGATAATCTCTATTGAAGATGTTTGTGCTCCATAATCACATATTCAAACAAATAAAAACCTCAGTCACACATATCCTCTTTGATGTTGCTCCTGATTTCCAGATGTTTATCTCTGGTTCCTAGTTATTGTAATTGGTTGTGTTCAGATAATAATTACTTGTTGAAAAACAAAAAATGAAGCATATTAGACCAAGCTGACACTATTAAGTATTCCATAATATACATCACTCTGATCCTCCATCATGCCTTTTTCCGTCATAAGCTTAATTCTGATAATTTATGTCAGCAGTCACAATTTTCTTTTAATATGTATTTCGTATGAATGTACTCTTGGTGTTATTGTGATTTGTGCTCTACATTATGAGGTCCTTGAGACTTCTAGTCAACCTAGAAGTAAAGAAAGAAAGGTCTACCAAGTAGAAAAGAAATAAATGAAGAGGTTTCTCGTTTACTTTGGTATGAATCAGTTAAGGGGCTTTCATGAGCATGAAGAGAATGGGTATATCCTACAGTTTGAGATGTTTTTACTCTGTTGCCTCTTTAAGAGCTTGGTAACTGGTTGCTTCCTTGAATTGAATGGAACACTTCAGAACAAGGCCTCCAAGAGTATCTAAGAGTATGGAACAAAGTAAAAAACATGTAATCTCTCATCCTTTACAGCATTAATGTTAAACTGGAATGCCTATGACTAAGCTATAACGGATATCAAGAGCCACTCGAACCTGGTAGGCCGTATTCCATGGTTACTGCTGGAAACTAGAAAAAGAGAAGAGGACCAGAAAGACCTGGGGGAAGTGGTCTATACTTTGTTAGTGTTACTGGCTCATAGGTAATCTTTACTATCAGCACTTGGACATTCCGCTCTTTGTGTCCTTTCCCTCCTCATTCCTTGGGGATTTCGTTCTCTTTACTTGCTTTGTTGTCATTTTCTGTTTGAGCTTTCAATATTTAATTATGTGGTATTCCCATTATTAAAAGTTTTAGTCTTATGCTCGATTTCTTTTATTGTTATTCGGCAGATCTGAATTCAATTGGTGGATTGGTGCCTCTTCTTGGTTACTTAAAGAACTCCCATGCAAACATTAGAGCCAAAGCGGCAGAAGTCGTAAGTACAATTGTTCAGAACAACCCGAGGAGCCAACAACTGGTAATGGAAGCTAATGGCCTAGAACCCCTTCTGTCAAATTTTACCTCAGATCCTGATGTTACTGCCCGCACTAAAGCTCTTGGTGCAATTTCATGTGAGTACTTTCCCCGTTATGATTTATTAGTTAAGTGTGCCCTTTAAATTTTGGTGTCATGTCATCTGTGTTTTCCAGTAGCGTTGATCAACTAGTTTTTTTATTTTTCCTTTATTCCAGCTTTAATTAGGCACAACAAGCCTGCCATTGCTGCATTTCGTCTTGCAAATGGTTATGCAGGTTTAAGAGATGCTTTGAGTTCTGAGAGTGTGAGATTTCAGAGGTACTATTTTCTATATCATGCACTAGACGTTTCTGAATCAACCATTGATGAAGCTGCTGCTTTCCCGTAAACCTTCCTCTTTTATATTCCTTTCTAATAGGTATAGTCCTGTTCTTTTGCAGGAAAGCCCTTAACTTGATCCATTATTTACTACATGAGAATCATTCAGACTGCAATGTAGTGACTGAGCTAGGATTTCCTCGAGTTATGATGCATCTAGCCTCTAGTGATGATGG</genome_strand>
        <mrna_strand>GGTTTATTGAAATGGAGTCTATCTCATGCTGATGGTACCAATCCTCCTTCTCGCAATTTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGAGGACAGGAGGTGGTTCATGGAGGCTATGCAAGCTCAAACTGTTGATGTAATAAAAAGAATGAAGGAGATTACACTTGTCATGCAAACACCAGAGCAGGTTTTGGAATCACAGGGAGTGACTTCCCAAGATATTGAAG.........................................................................................ATATGCTGGATGAGCTACAAGAACATGTTGAATCAATTGACATGGCTAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGAACTCAATTGGTGGATTGGTGCCTCTTCTTGGTTACTTAAAGAACTCCCATGCAAACATTAGAGCCAAAGCGGCAGAAGTTGTAAGTACAATTGTTCAGAACAACCCGAGGAGCCAACAGCTGGTAATGGAAGCTAATGGCCTAGAACCTCTTCTGTCAAATTTCACCTCAGATCCTGATGTTACTGCCCGCACAAAAGCTCTTGGTGCAATTTCAT........................................................................................................................CTTTAATCAGGCACAACAAGCCTGCCATTGCTGCATTTCGTCTTGCAAATGGTTATGCAGCTTTAAGAGATGCTTTGAGTTCGGAGAATGTGAGATTTCAAAG..........................................................................................................................GAAAGCCCTTAACGTGATCCATTATTTACTGCAAGAAGATCATTCAGACTGCAATGTAGTGACTGAGCTANGATTTCCTCGAGTTATGATGCATCTAGCCTCTAGTGATGATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E263799" ref_strand="+" ref_description="SGN-E263799 [cLEG-60-N16]">
      <seq>tcatggaggctatgcaagctcaaactgttgatgtgattaagagaatgaaggagattacacttgtcatgcaaacaccagagcaggttttggaatcacagggggtgacttcccaagatattgaagatatgctggatgagctacaagaacatgtcgaatcaattgatatggctaatgatctgaattcaattggtggattggtgcctcttcttggttacttaaagaactcccatgcaaacattagagccaaagcggcagaagtcgtaagtacaattgttcagaacaacccgaggagccaacaactggtaatggaagctaatggcctagaaccccttctgtcaaattttacctcagatcctgatgttactgcccgcactaaagctcttggtgcaatttcatctttaattaggcacaacaagcctgccattgctgcatttcgtcttgcaaatggttatgcaggtttaagagatgctttgagttctgagagtgtgagatttcagaggaaagcccttaacttgatccattatttactacatgagaatcattcagactgcaatgtagtgactgagctaggatttcctcgagttatgatgcatctagcctctagtgatgatggagaagtgcgagagggtgccctacaaggtcttcttgaccttgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="80464" stop="84136"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80764" g_stop="80886" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80887" i_stop="80975" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80976" g_stop="81026" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="174" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81027" i_stop="83112" i_length="2086">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83113" g_stop="83334" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="396" r_length="222" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83335" i_stop="83454" i_length="120">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83455" g_stop="83557" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="499" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83558" i_stop="83679" i_length="122">
            <donor d_prob="0.700" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="83680" g_stop="83836" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="656" r_length="157" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E263799" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E263799" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80764" e_stop="80886"/>
          <exon e_start="80976" e_stop="81026"/>
          <exon e_start="83113" e_stop="83334"/>
          <exon e_start="83455" e_stop="83557"/>
          <exon e_start="83680" e_stop="83836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGGAGGCTATGCAAGCTCAAACTGTTGATGTGATTAAGAGAATGAAGGAGATTACACTTGTCATGCAAACACCAGAGCAGGTTTTGGAATCACAGGGGGTGACTTCCCAAGATATTGAAGGTACTTGTTTAGTTTTTCTTGATAATGTGTAATCATATTTTATGAATTTTACTCGTTTTGACTTTTTTGCTGGCCTTGTGATTTCACAGATATGCTGGATGAGCTACAAGAACATGTCGAATCAATTGATATGGCTAATGGTGAGTTCTTGGTGTAATTTAGTTATTCAGAAATGTGTGTGTATCATGATTTGGTAGTTACGCATATTACATAATTCTTGCTAACCAGCTAATTTGGAATTGAGGTCTTGTTGTGGAAGCTCTATCTGTTAGAGTGTCCCACATTAGTTGAGGGAATAGATTGTTGTCTCCTTATAGTATTGGACAATTCTTGTCACATGAGCTAGCTTTTGTTGTTGATTTAGGCCCAATTCTTGTCTCCATTTCTTAATATGGAGTTAGAGCTGCATCAGTATTTTCTTAGTTTACTGAATACTAGGCCCAATGTTAAATTGTTCATGCTCTGGTTATCTACTCTCGGTTATCAGAGGAGACTTAACATCTCACATTGTTTGAAAGAATGACCCCTTGTCTTTTATATATTTTTTGCTCAATCCTCACCTCTTAAGCTAGCTTTTGGGGTCCAGTGCCCAAGGCCAATTCACTTGATAATATCATGTAGGTTTAATTGAAGTTTCCAATGTTGCACGTCATGTGCTTGAACTTCGCCACATTCAAAATCACTGTATTTAAGTGGACGAGAGTAGAGGCGCGTACCAATTATTGCCTAGTTATGAGCCGGCCCTCGGAATTTCTCGGCAATTAAAACAAAATTGTCCTGATCAAAGAGTAGTTTCATTGGTTATATGAGTTCATTCTTTTGCTGTTCTTTGACAAAGGTAGTCTGTAGTTCATATCATTGTGTTCATCTAGGAGCCAAGATTGTAATTATTTCCTGTTTTGTGAAGTGTGACCTGACAAGCATCCTGTATTTCTGTGAGTAGATACTGACCAGCATGCATGTTGGATACTCCATAAATAGTGCATATTTGAAGAATCCGACACGGGTGCAACAACATTTTTGGAGAGTTTGAGCAACATAGTTCTGCAATGGTTTTTTCTTAGACTGAAGAATTTTTGTTCTGTCTCAAAATTGCAGTAATGATATTGCTCTCATCTTTTACCTATGATAAATTCAACGACGTACATCCACTCATTTCAAGGAAAACCATGTGAGAATAGGTGCTCAGTAAAGTTATGCAACTTCATGATAATCTCTATTGAAGATGTTTGTGCTCCATAATCACATATTCAAACAAATAAAAACCTCAGTCACACATATCCTCTTTGATGTTGCTCCTGATTTCCAGATGTTTATCTCTGGTTCCTAGTTATTGTAATTGGTTGTGTTCAGATAATAATTACTTGTTGAAAAACAAAAAATGAAGCATATTAGACCAAGCTGACACTATTAAGTATTCCATAATATACATCACTCTGATCCTCCATCATGCCTTTTTCCGTCATAAGCTTAATTCTGATAATTTATGTCAGCAGTCACAATTTTCTTTTAATATGTATTTCGTATGAATGTACTCTTGGTGTTATTGTGATTTGTGCTCTACATTATGAGGTCCTTGAGACTTCTAGTCAACCTAGAAGTAAAGAAAGAAAGGTCTACCAAGTAGAAAAGAAATAAATGAAGAGGTTTCTCGTTTACTTTGGTATGAATCAGTTAAGGGGCTTTCATGAGCATGAAGAGAATGGGTATATCCTACAGTTTGAGATGTTTTTACTCTGTTGCCTCTTTAAGAGCTTGGTAACTGGTTGCTTCCTTGAATTGAATGGAACACTTCAGAACAAGGCCTCCAAGAGTATCTAAGAGTATGGAACAAAGTAAAAAACATGTAATCTCTCATCCTTTACAGCATTAATGTTAAACTGGAATGCCTATGACTAAGCTATAACGGATATCAAGAGCCACTCGAACCTGGTAGGCCGTATTCCATGGTTACTGCTGGAAACTAGAAAAAGAGAAGAGGACCAGAAAGACCTGGGGGAAGTGGTCTATACTTTGTTAGTGTTACTGGCTCATAGGTAATCTTTACTATCAGCACTTGGACATTCCGCTCTTTGTGTCCTTTCCCTCCTCATTCCTTGGGGATTTCGTTCTCTTTACTTGCTTTGTTGTCATTTTCTGTTTGAGCTTTCAATATTTAATTATGTGGTATTCCCATTATTAAAAGTTTTAGTCTTATGCTCGATTTCTTTTATTGTTATTCGGCAGATCTGAATTCAATTGGTGGATTGGTGCCTCTTCTTGGTTACTTAAAGAACTCCCATGCAAACATTAGAGCCAAAGCGGCAGAAGTCGTAAGTACAATTGTTCAGAACAACCCGAGGAGCCAACAACTGGTAATGGAAGCTAATGGCCTAGAACCCCTTCTGTCAAATTTTACCTCAGATCCTGATGTTACTGCCCGCACTAAAGCTCTTGGTGCAATTTCATGTGAGTACTTTCCCCGTTATGATTTATTAGTTAAGTGTGCCCTTTAAATTTTGGTGTCATGTCATCTGTGTTTTCCAGTAGCGTTGATCAACTAGTTTTTTTATTTTTCCTTTATTCCAGCTTTAATTAGGCACAACAAGCCTGCCATTGCTGCATTTCGTCTTGCAAATGGTTATGCAGGTTTAAGAGATGCTTTGAGTTCTGAGAGTGTGAGATTTCAGAGGTACTATTTTCTATATCATGCACTAGACGTTTCTGAATCAACCATTGATGAAGCTGCTGCTTTCCCGTAAACCTTCCTCTTTTATATTCCTTTCTAATAGGTATAGTCCTGTTCTTTTGCAGGAAAGCCCTTAACTTGATCCATTATTTACTACATGAGAATCATTCAGACTGCAATGTAGTGACTGAGCTAGGATTTCCTCGAGTTATGATGCATCTAGCCTCTAGTGATGATGGAGAAGTGCGAGAGGGTGCCCTACAAGGTCTTCTTGACCTTGCC</genome_strand>
        <mrna_strand>TCATGGAGGCTATGCAAGCTCAAACTGTTGATGTGATTAAGAGAATGAAGGAGATTACACTTGTCATGCAAACACCAGAGCAGGTTTTGGAATCACAGGGGGTGACTTCCCAAGATATTGAAG.........................................................................................ATATGCTGGATGAGCTACAAGAACATGTCGAATCAATTGATATGGCTAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGAATTCAATTGGTGGATTGGTGCCTCTTCTTGGTTACTTAAAGAACTCCCATGCAAACATTAGAGCCAAAGCGGCAGAAGTCGTAAGTACAATTGTTCAGAACAACCCGAGGAGCCAACAACTGGTAATGGAAGCTAATGGCCTAGAACCCCTTCTGTCAAATTTTACCTCAGATCCTGATGTTACTGCCCGCACTAAAGCTCTTGGTGCAATTTCAT........................................................................................................................CTTTAATTAGGCACAACAAGCCTGCCATTGCTGCATTTCGTCTTGCAAATGGTTATGCAGGTTTAAGAGATGCTTTGAGTTCTGAGAGTGTGAGATTTCAGAG..........................................................................................................................GAAAGCCCTTAACTTGATCCATTATTTACTACATGAGAATCATTCAGACTGCAATGTAGTGACTGAGCTAGGATTTCCTCGAGTTATGATGCATCTAGCCTCTAGTGATGATGGAGAAGTGCGAGAGGGTGCCCTACAAGGTCTTCTTGACCTTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E262078" ref_strand="+" ref_description="SGN-E262078 [cLEG-58-E7]">
      <seq>tcatggaggctatgcaagctcaaactgttgatgtgattaagagaatgaaggagattacacttgtcatgcaaacaccagagcaggttttggaatcacagggggtgacttcccaagatattgaagatatgctggatgagctacaagaacatgtcgaatcaattgatatggctaatgatctgaattcaattggtggattggtgcctcttcttggttacttaaagaactcccatgcaaacattatagccaaagcggcagaagtcgtaagtacaattgttcaaaacaacccgaggagccaacaactggtaatggaagctaatggcctagaaccccttctgtcaaattttacctcagatcctgatgttactgcccgcactaaagctcttggtgcaatttcatctttaattaggcacaacaagcctgccattgctgcatttcgtcttgcaaatgggtatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="80464" stop="83811"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80764" g_stop="80886" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80887" i_stop="80975" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80976" g_stop="81026" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="174" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81027" i_stop="83112" i_length="2086">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83113" g_stop="83334" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="396" r_length="222" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83335" i_stop="83454" i_length="120">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83455" g_stop="83511" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="453" r_length="57" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E262078" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262078" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80764" e_stop="80886"/>
          <exon e_start="80976" e_stop="81026"/>
          <exon e_start="83113" e_stop="83334"/>
          <exon e_start="83455" e_stop="83511"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGGAGGCTATGCAAGCTCAAACTGTTGATGTGATTAAGAGAATGAAGGAGATTACACTTGTCATGCAAACACCAGAGCAGGTTTTGGAATCACAGGGGGTGACTTCCCAAGATATTGAAGGTACTTGTTTAGTTTTTCTTGATAATGTGTAATCATATTTTATGAATTTTACTCGTTTTGACTTTTTTGCTGGCCTTGTGATTTCACAGATATGCTGGATGAGCTACAAGAACATGTCGAATCAATTGATATGGCTAATGGTGAGTTCTTGGTGTAATTTAGTTATTCAGAAATGTGTGTGTATCATGATTTGGTAGTTACGCATATTACATAATTCTTGCTAACCAGCTAATTTGGAATTGAGGTCTTGTTGTGGAAGCTCTATCTGTTAGAGTGTCCCACATTAGTTGAGGGAATAGATTGTTGTCTCCTTATAGTATTGGACAATTCTTGTCACATGAGCTAGCTTTTGTTGTTGATTTAGGCCCAATTCTTGTCTCCATTTCTTAATATGGAGTTAGAGCTGCATCAGTATTTTCTTAGTTTACTGAATACTAGGCCCAATGTTAAATTGTTCATGCTCTGGTTATCTACTCTCGGTTATCAGAGGAGACTTAACATCTCACATTGTTTGAAAGAATGACCCCTTGTCTTTTATATATTTTTTGCTCAATCCTCACCTCTTAAGCTAGCTTTTGGGGTCCAGTGCCCAAGGCCAATTCACTTGATAATATCATGTAGGTTTAATTGAAGTTTCCAATGTTGCACGTCATGTGCTTGAACTTCGCCACATTCAAAATCACTGTATTTAAGTGGACGAGAGTAGAGGCGCGTACCAATTATTGCCTAGTTATGAGCCGGCCCTCGGAATTTCTCGGCAATTAAAACAAAATTGTCCTGATCAAAGAGTAGTTTCATTGGTTATATGAGTTCATTCTTTTGCTGTTCTTTGACAAAGGTAGTCTGTAGTTCATATCATTGTGTTCATCTAGGAGCCAAGATTGTAATTATTTCCTGTTTTGTGAAGTGTGACCTGACAAGCATCCTGTATTTCTGTGAGTAGATACTGACCAGCATGCATGTTGGATACTCCATAAATAGTGCATATTTGAAGAATCCGACACGGGTGCAACAACATTTTTGGAGAGTTTGAGCAACATAGTTCTGCAATGGTTTTTTCTTAGACTGAAGAATTTTTGTTCTGTCTCAAAATTGCAGTAATGATATTGCTCTCATCTTTTACCTATGATAAATTCAACGACGTACATCCACTCATTTCAAGGAAAACCATGTGAGAATAGGTGCTCAGTAAAGTTATGCAACTTCATGATAATCTCTATTGAAGATGTTTGTGCTCCATAATCACATATTCAAACAAATAAAAACCTCAGTCACACATATCCTCTTTGATGTTGCTCCTGATTTCCAGATGTTTATCTCTGGTTCCTAGTTATTGTAATTGGTTGTGTTCAGATAATAATTACTTGTTGAAAAACAAAAAATGAAGCATATTAGACCAAGCTGACACTATTAAGTATTCCATAATATACATCACTCTGATCCTCCATCATGCCTTTTTCCGTCATAAGCTTAATTCTGATAATTTATGTCAGCAGTCACAATTTTCTTTTAATATGTATTTCGTATGAATGTACTCTTGGTGTTATTGTGATTTGTGCTCTACATTATGAGGTCCTTGAGACTTCTAGTCAACCTAGAAGTAAAGAAAGAAAGGTCTACCAAGTAGAAAAGAAATAAATGAAGAGGTTTCTCGTTTACTTTGGTATGAATCAGTTAAGGGGCTTTCATGAGCATGAAGAGAATGGGTATATCCTACAGTTTGAGATGTTTTTACTCTGTTGCCTCTTTAAGAGCTTGGTAACTGGTTGCTTCCTTGAATTGAATGGAACACTTCAGAACAAGGCCTCCAAGAGTATCTAAGAGTATGGAACAAAGTAAAAAACATGTAATCTCTCATCCTTTACAGCATTAATGTTAAACTGGAATGCCTATGACTAAGCTATAACGGATATCAAGAGCCACTCGAACCTGGTAGGCCGTATTCCATGGTTACTGCTGGAAACTAGAAAAAGAGAAGAGGACCAGAAAGACCTGGGGGAAGTGGTCTATACTTTGTTAGTGTTACTGGCTCATAGGTAATCTTTACTATCAGCACTTGGACATTCCGCTCTTTGTGTCCTTTCCCTCCTCATTCCTTGGGGATTTCGTTCTCTTTACTTGCTTTGTTGTCATTTTCTGTTTGAGCTTTCAATATTTAATTATGTGGTATTCCCATTATTAAAAGTTTTAGTCTTATGCTCGATTTCTTTTATTGTTATTCGGCAGATCTGAATTCAATTGGTGGATTGGTGCCTCTTCTTGGTTACTTAAAGAACTCCCATGCAAACATTAGAGCCAAAGCGGCAGAAGTCGTAAGTACAATTGTTCAGAACAACCCGAGGAGCCAACAACTGGTAATGGAAGCTAATGGCCTAGAACCCCTTCTGTCAAATTTTACCTCAGATCCTGATGTTACTGCCCGCACTAAAGCTCTTGGTGCAATTTCATGTGAGTACTTTCCCCGTTATGATTTATTAGTTAAGTGTGCCCTTTAAATTTTGGTGTCATGTCATCTGTGTTTTCCAGTAGCGTTGATCAACTAGTTTTTTTATTTTTCCTTTATTCCAGCTTTAATTAGGCACAACAAGCCTGCCATTGCTGCATTTCGTCTTGCAAATGGTTATG</genome_strand>
        <mrna_strand>TCATGGAGGCTATGCAAGCTCAAACTGTTGATGTGATTAAGAGAATGAAGGAGATTACACTTGTCATGCAAACACCAGAGCAGGTTTTGGAATCACAGGGGGTGACTTCCCAAGATATTGAAG.........................................................................................ATATGCTGGATGAGCTACAAGAACATGTCGAATCAATTGATATGGCTAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGAATTCAATTGGTGGATTGGTGCCTCTTCTTGGTTACTTAAAGAACTCCCATGCAAACATTATAGCCAAAGCGGCAGAAGTCGTAAGTACAATTGTTCAAAACAACCCGAGGAGCCAACAACTGGTAATGGAAGCTAATGGCCTAGAACCCCTTCTGTCAAATTTTACCTCAGATCCTGATGTTACTGCCCGCACTAAAGCTCTTGGTGCAATTTCAT........................................................................................................................CTTTAATTAGGCACAACAAGCCTGCCATTGCTGCATTTCGTCTTGCAAATGGGTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E715830" ref_strand="+" ref_description="SGN-E715830 [FB15BE11]">
      <seq>gattaagagaatgaaggagattacacttgtcatgcaaacaccagagcaggttttggaatcacagggggtgacttcccaagatattgaagatatgctggatgagctacaagaacatgtcgaatcaattgatatggctaatgatctgaattcaattggtggattggtgcctcttcttggttacttaaagaactcccatgcaaacattagagccaaagcggcagaagtcgtaagtacaattgttcagaacaacccgaggagccaacaactggtaatggaagctaatggcctagaaccccttctgtcaaattttacctcagatcctgatgttactgcccgcactaaagctcttggtgcaatttcatctttaattaggcacaacaagcctgccattgctgcatttcgtcttgcaaatggttatgcaggtttaagagatgctttgagttctgagagtgtgagatttcagaggaaagcccttaacttgatccattatttactacatgagaatcattcagactgcaatgtagtgactgagctaggatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="80498" stop="84056"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80798" g_stop="80886" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80887" i_stop="80975" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80976" g_stop="81026" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="140" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81027" i_stop="83112" i_length="2086">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83113" g_stop="83334" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="362" r_length="222" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83335" i_stop="83454" i_length="120">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83455" g_stop="83557" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="465" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83558" i_stop="83679" i_length="122">
            <donor d_prob="0.700" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="83680" g_stop="83756" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="542" r_length="77" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E715830" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715830" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80798" e_stop="80886"/>
          <exon e_start="80976" e_stop="81026"/>
          <exon e_start="83113" e_stop="83334"/>
          <exon e_start="83455" e_stop="83557"/>
          <exon e_start="83680" e_stop="83756"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTAAGAGAATGAAGGAGATTACACTTGTCATGCAAACACCAGAGCAGGTTTTGGAATCACAGGGGGTGACTTCCCAAGATATTGAAGGTACTTGTTTAGTTTTTCTTGATAATGTGTAATCATATTTTATGAATTTTACTCGTTTTGACTTTTTTGCTGGCCTTGTGATTTCACAGATATGCTGGATGAGCTACAAGAACATGTCGAATCAATTGATATGGCTAATGGTGAGTTCTTGGTGTAATTTAGTTATTCAGAAATGTGTGTGTATCATGATTTGGTAGTTACGCATATTACATAATTCTTGCTAACCAGCTAATTTGGAATTGAGGTCTTGTTGTGGAAGCTCTATCTGTTAGAGTGTCCCACATTAGTTGAGGGAATAGATTGTTGTCTCCTTATAGTATTGGACAATTCTTGTCACATGAGCTAGCTTTTGTTGTTGATTTAGGCCCAATTCTTGTCTCCATTTCTTAATATGGAGTTAGAGCTGCATCAGTATTTTCTTAGTTTACTGAATACTAGGCCCAATGTTAAATTGTTCATGCTCTGGTTATCTACTCTCGGTTATCAGAGGAGACTTAACATCTCACATTGTTTGAAAGAATGACCCCTTGTCTTTTATATATTTTTTGCTCAATCCTCACCTCTTAAGCTAGCTTTTGGGGTCCAGTGCCCAAGGCCAATTCACTTGATAATATCATGTAGGTTTAATTGAAGTTTCCAATGTTGCACGTCATGTGCTTGAACTTCGCCACATTCAAAATCACTGTATTTAAGTGGACGAGAGTAGAGGCGCGTACCAATTATTGCCTAGTTATGAGCCGGCCCTCGGAATTTCTCGGCAATTAAAACAAAATTGTCCTGATCAAAGAGTAGTTTCATTGGTTATATGAGTTCATTCTTTTGCTGTTCTTTGACAAAGGTAGTCTGTAGTTCATATCATTGTGTTCATCTAGGAGCCAAGATTGTAATTATTTCCTGTTTTGTGAAGTGTGACCTGACAAGCATCCTGTATTTCTGTGAGTAGATACTGACCAGCATGCATGTTGGATACTCCATAAATAGTGCATATTTGAAGAATCCGACACGGGTGCAACAACATTTTTGGAGAGTTTGAGCAACATAGTTCTGCAATGGTTTTTTCTTAGACTGAAGAATTTTTGTTCTGTCTCAAAATTGCAGTAATGATATTGCTCTCATCTTTTACCTATGATAAATTCAACGACGTACATCCACTCATTTCAAGGAAAACCATGTGAGAATAGGTGCTCAGTAAAGTTATGCAACTTCATGATAATCTCTATTGAAGATGTTTGTGCTCCATAATCACATATTCAAACAAATAAAAACCTCAGTCACACATATCCTCTTTGATGTTGCTCCTGATTTCCAGATGTTTATCTCTGGTTCCTAGTTATTGTAATTGGTTGTGTTCAGATAATAATTACTTGTTGAAAAACAAAAAATGAAGCATATTAGACCAAGCTGACACTATTAAGTATTCCATAATATACATCACTCTGATCCTCCATCATGCCTTTTTCCGTCATAAGCTTAATTCTGATAATTTATGTCAGCAGTCACAATTTTCTTTTAATATGTATTTCGTATGAATGTACTCTTGGTGTTATTGTGATTTGTGCTCTACATTATGAGGTCCTTGAGACTTCTAGTCAACCTAGAAGTAAAGAAAGAAAGGTCTACCAAGTAGAAAAGAAATAAATGAAGAGGTTTCTCGTTTACTTTGGTATGAATCAGTTAAGGGGCTTTCATGAGCATGAAGAGAATGGGTATATCCTACAGTTTGAGATGTTTTTACTCTGTTGCCTCTTTAAGAGCTTGGTAACTGGTTGCTTCCTTGAATTGAATGGAACACTTCAGAACAAGGCCTCCAAGAGTATCTAAGAGTATGGAACAAAGTAAAAAACATGTAATCTCTCATCCTTTACAGCATTAATGTTAAACTGGAATGCCTATGACTAAGCTATAACGGATATCAAGAGCCACTCGAACCTGGTAGGCCGTATTCCATGGTTACTGCTGGAAACTAGAAAAAGAGAAGAGGACCAGAAAGACCTGGGGGAAGTGGTCTATACTTTGTTAGTGTTACTGGCTCATAGGTAATCTTTACTATCAGCACTTGGACATTCCGCTCTTTGTGTCCTTTCCCTCCTCATTCCTTGGGGATTTCGTTCTCTTTACTTGCTTTGTTGTCATTTTCTGTTTGAGCTTTCAATATTTAATTATGTGGTATTCCCATTATTAAAAGTTTTAGTCTTATGCTCGATTTCTTTTATTGTTATTCGGCAGATCTGAATTCAATTGGTGGATTGGTGCCTCTTCTTGGTTACTTAAAGAACTCCCATGCAAACATTAGAGCCAAAGCGGCAGAAGTCGTAAGTACAATTGTTCAGAACAACCCGAGGAGCCAACAACTGGTAATGGAAGCTAATGGCCTAGAACCCCTTCTGTCAAATTTTACCTCAGATCCTGATGTTACTGCCCGCACTAAAGCTCTTGGTGCAATTTCATGTGAGTACTTTCCCCGTTATGATTTATTAGTTAAGTGTGCCCTTTAAATTTTGGTGTCATGTCATCTGTGTTTTCCAGTAGCGTTGATCAACTAGTTTTTTTATTTTTCCTTTATTCCAGCTTTAATTAGGCACAACAAGCCTGCCATTGCTGCATTTCGTCTTGCAAATGGTTATGCAGGTTTAAGAGATGCTTTGAGTTCTGAGAGTGTGAGATTTCAGAGGTACTATTTTCTATATCATGCACTAGACGTTTCTGAATCAACCATTGATGAAGCTGCTGCTTTCCCGTAAACCTTCCTCTTTTATATTCCTTTCTAATAGGTATAGTCCTGTTCTTTTGCAGGAAAGCCCTTAACTTGATCCATTATTTACTACATGAGAATCATTCAGACTGCAATGTAGTGACTGAGCTAGGATTTC</genome_strand>
        <mrna_strand>GATTAAGAGAATGAAGGAGATTACACTTGTCATGCAAACACCAGAGCAGGTTTTGGAATCACAGGGGGTGACTTCCCAAGATATTGAAG.........................................................................................ATATGCTGGATGAGCTACAAGAACATGTCGAATCAATTGATATGGCTAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGAATTCAATTGGTGGATTGGTGCCTCTTCTTGGTTACTTAAAGAACTCCCATGCAAACATTAGAGCCAAAGCGGCAGAAGTCGTAAGTACAATTGTTCAGAACAACCCGAGGAGCCAACAACTGGTAATGGAAGCTAATGGCCTAGAACCCCTTCTGTCAAATTTTACCTCAGATCCTGATGTTACTGCCCGCACTAAAGCTCTTGGTGCAATTTCAT........................................................................................................................CTTTAATTAGGCACAACAAGCCTGCCATTGCTGCATTTCGTCTTGCAAATGGTTATGCAGGTTTAAGAGATGCTTTGAGTTCTGAGAGTGTGAGATTTCAGAG..........................................................................................................................GAAAGCCCTTAACTTGATCCATTATTTACTACATGAGAATCATTCAGACTGCAATGTAGTGACTGAGCTAGGATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E716910" ref_strand="+" ref_description="SGN-E716910 [FB18BE12]">
      <seq>gattaagagaatgaaggagattacacttgtcatgcaaacaccagagcaggttttggaatcacagggggtgacttcccaagatattgaagatatgctggatgagctacaagaacatgtcgaatcaattgatatggctaatgatctgaattcaattggtggattggtgcctcttcttggttacttaaagaactcccatgcaaacattagagccaaagcggcagaagtcgtaagtacaattgttcagaacaacccgaggagccaacaactggtaatggaagctaatggcctagaaccccttctgtcaaattttacctcagatcctgatgttactgcccgcactaaagctcttggtgcaatttcatctttaattaggcacaacaagcctgccattgctgcatttcgtcttgcaaatggttatgcaggtttaagagatgctttgagttctgagagtgtgagatttcagaggaaagcccttaacttgatccattatttactacatgagaatcattcagactgcaatgtagtgactgagctaggatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="80498" stop="84056"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80798" g_stop="80886" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80887" i_stop="80975" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80976" g_stop="81026" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="140" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81027" i_stop="83112" i_length="2086">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83113" g_stop="83334" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="362" r_length="222" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83335" i_stop="83454" i_length="120">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83455" g_stop="83557" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="465" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83558" i_stop="83679" i_length="122">
            <donor d_prob="0.700" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="83680" g_stop="83756" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="542" r_length="77" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E716910" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E716910" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80798" e_stop="80886"/>
          <exon e_start="80976" e_stop="81026"/>
          <exon e_start="83113" e_stop="83334"/>
          <exon e_start="83455" e_stop="83557"/>
          <exon e_start="83680" e_stop="83756"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTAAGAGAATGAAGGAGATTACACTTGTCATGCAAACACCAGAGCAGGTTTTGGAATCACAGGGGGTGACTTCCCAAGATATTGAAGGTACTTGTTTAGTTTTTCTTGATAATGTGTAATCATATTTTATGAATTTTACTCGTTTTGACTTTTTTGCTGGCCTTGTGATTTCACAGATATGCTGGATGAGCTACAAGAACATGTCGAATCAATTGATATGGCTAATGGTGAGTTCTTGGTGTAATTTAGTTATTCAGAAATGTGTGTGTATCATGATTTGGTAGTTACGCATATTACATAATTCTTGCTAACCAGCTAATTTGGAATTGAGGTCTTGTTGTGGAAGCTCTATCTGTTAGAGTGTCCCACATTAGTTGAGGGAATAGATTGTTGTCTCCTTATAGTATTGGACAATTCTTGTCACATGAGCTAGCTTTTGTTGTTGATTTAGGCCCAATTCTTGTCTCCATTTCTTAATATGGAGTTAGAGCTGCATCAGTATTTTCTTAGTTTACTGAATACTAGGCCCAATGTTAAATTGTTCATGCTCTGGTTATCTACTCTCGGTTATCAGAGGAGACTTAACATCTCACATTGTTTGAAAGAATGACCCCTTGTCTTTTATATATTTTTTGCTCAATCCTCACCTCTTAAGCTAGCTTTTGGGGTCCAGTGCCCAAGGCCAATTCACTTGATAATATCATGTAGGTTTAATTGAAGTTTCCAATGTTGCACGTCATGTGCTTGAACTTCGCCACATTCAAAATCACTGTATTTAAGTGGACGAGAGTAGAGGCGCGTACCAATTATTGCCTAGTTATGAGCCGGCCCTCGGAATTTCTCGGCAATTAAAACAAAATTGTCCTGATCAAAGAGTAGTTTCATTGGTTATATGAGTTCATTCTTTTGCTGTTCTTTGACAAAGGTAGTCTGTAGTTCATATCATTGTGTTCATCTAGGAGCCAAGATTGTAATTATTTCCTGTTTTGTGAAGTGTGACCTGACAAGCATCCTGTATTTCTGTGAGTAGATACTGACCAGCATGCATGTTGGATACTCCATAAATAGTGCATATTTGAAGAATCCGACACGGGTGCAACAACATTTTTGGAGAGTTTGAGCAACATAGTTCTGCAATGGTTTTTTCTTAGACTGAAGAATTTTTGTTCTGTCTCAAAATTGCAGTAATGATATTGCTCTCATCTTTTACCTATGATAAATTCAACGACGTACATCCACTCATTTCAAGGAAAACCATGTGAGAATAGGTGCTCAGTAAAGTTATGCAACTTCATGATAATCTCTATTGAAGATGTTTGTGCTCCATAATCACATATTCAAACAAATAAAAACCTCAGTCACACATATCCTCTTTGATGTTGCTCCTGATTTCCAGATGTTTATCTCTGGTTCCTAGTTATTGTAATTGGTTGTGTTCAGATAATAATTACTTGTTGAAAAACAAAAAATGAAGCATATTAGACCAAGCTGACACTATTAAGTATTCCATAATATACATCACTCTGATCCTCCATCATGCCTTTTTCCGTCATAAGCTTAATTCTGATAATTTATGTCAGCAGTCACAATTTTCTTTTAATATGTATTTCGTATGAATGTACTCTTGGTGTTATTGTGATTTGTGCTCTACATTATGAGGTCCTTGAGACTTCTAGTCAACCTAGAAGTAAAGAAAGAAAGGTCTACCAAGTAGAAAAGAAATAAATGAAGAGGTTTCTCGTTTACTTTGGTATGAATCAGTTAAGGGGCTTTCATGAGCATGAAGAGAATGGGTATATCCTACAGTTTGAGATGTTTTTACTCTGTTGCCTCTTTAAGAGCTTGGTAACTGGTTGCTTCCTTGAATTGAATGGAACACTTCAGAACAAGGCCTCCAAGAGTATCTAAGAGTATGGAACAAAGTAAAAAACATGTAATCTCTCATCCTTTACAGCATTAATGTTAAACTGGAATGCCTATGACTAAGCTATAACGGATATCAAGAGCCACTCGAACCTGGTAGGCCGTATTCCATGGTTACTGCTGGAAACTAGAAAAAGAGAAGAGGACCAGAAAGACCTGGGGGAAGTGGTCTATACTTTGTTAGTGTTACTGGCTCATAGGTAATCTTTACTATCAGCACTTGGACATTCCGCTCTTTGTGTCCTTTCCCTCCTCATTCCTTGGGGATTTCGTTCTCTTTACTTGCTTTGTTGTCATTTTCTGTTTGAGCTTTCAATATTTAATTATGTGGTATTCCCATTATTAAAAGTTTTAGTCTTATGCTCGATTTCTTTTATTGTTATTCGGCAGATCTGAATTCAATTGGTGGATTGGTGCCTCTTCTTGGTTACTTAAAGAACTCCCATGCAAACATTAGAGCCAAAGCGGCAGAAGTCGTAAGTACAATTGTTCAGAACAACCCGAGGAGCCAACAACTGGTAATGGAAGCTAATGGCCTAGAACCCCTTCTGTCAAATTTTACCTCAGATCCTGATGTTACTGCCCGCACTAAAGCTCTTGGTGCAATTTCATGTGAGTACTTTCCCCGTTATGATTTATTAGTTAAGTGTGCCCTTTAAATTTTGGTGTCATGTCATCTGTGTTTTCCAGTAGCGTTGATCAACTAGTTTTTTTATTTTTCCTTTATTCCAGCTTTAATTAGGCACAACAAGCCTGCCATTGCTGCATTTCGTCTTGCAAATGGTTATGCAGGTTTAAGAGATGCTTTGAGTTCTGAGAGTGTGAGATTTCAGAGGTACTATTTTCTATATCATGCACTAGACGTTTCTGAATCAACCATTGATGAAGCTGCTGCTTTCCCGTAAACCTTCCTCTTTTATATTCCTTTCTAATAGGTATAGTCCTGTTCTTTTGCAGGAAAGCCCTTAACTTGATCCATTATTTACTACATGAGAATCATTCAGACTGCAATGTAGTGACTGAGCTAGGATTTC</genome_strand>
        <mrna_strand>GATTAAGAGAATGAAGGAGATTACACTTGTCATGCAAACACCAGAGCAGGTTTTGGAATCACAGGGGGTGACTTCCCAAGATATTGAAG.........................................................................................ATATGCTGGATGAGCTACAAGAACATGTCGAATCAATTGATATGGCTAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGAATTCAATTGGTGGATTGGTGCCTCTTCTTGGTTACTTAAAGAACTCCCATGCAAACATTAGAGCCAAAGCGGCAGAAGTCGTAAGTACAATTGTTCAGAACAACCCGAGGAGCCAACAACTGGTAATGGAAGCTAATGGCCTAGAACCCCTTCTGTCAAATTTTACCTCAGATCCTGATGTTACTGCCCGCACTAAAGCTCTTGGTGCAATTTCAT........................................................................................................................CTTTAATTAGGCACAACAAGCCTGCCATTGCTGCATTTCGTCTTGCAAATGGTTATGCAGGTTTAAGAGATGCTTTGAGTTCTGAGAGTGTGAGATTTCAGAG..........................................................................................................................GAAAGCCCTTAACTTGATCCATTATTTACTACATGAGAATCATTCAGACTGCAATGTAGTGACTGAGCTAGGATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E261471" ref_strand="+" ref_description="SGN-E261471 [cLEG-57-N24]">
      <seq>gtgacttcccaagatattgaagatatgctggatgagctacaagaacatgtcgaatcaattgatatggctaatgatctgaattcaattggtggattggtgcctcttcttggttacttaaagaactcccatgcaaacattagagccaaagcggcagaagtcgtaagtacaattgttcagaacaacccgaggagccaacaactggtaatggaagctaatggcctagaaccccttctgtcaaattttacctcagatcctgatgttactgcccgcactaaagctcttggtgcaatttcatctttaattaggcacaacaagcctgccattgctgcatttcgtcttgcaaatggttatgcaggtttaagagatgctttgagttctgagagtgtgagatttcagaggaaagcccttaacttgatccattatttactacatgagaatcattcagactgcaatgtagtgactgagctaggatttcctcgagttatgatgcatctagcctctagtgatgatggagaagtgcgagagggtgccctacaaggtcttcttgaccttgcccaagacaagacaggagaggttgctggctcctcatcgactgaaaaaaatgagaaactcaagcaaatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="80565" stop="84203"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80865" g_stop="80886" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80887" i_stop="80975" i_length="89">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80976" g_stop="81026" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="73" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81027" i_stop="83112" i_length="2086">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83113" g_stop="83334" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="295" r_length="222" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83335" i_stop="83454" i_length="120">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83455" g_stop="83557" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="398" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83558" i_stop="83679" i_length="122">
            <donor d_prob="0.700" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="83680" g_stop="83903" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="622" r_length="224" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E261471" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261471" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80865" e_stop="80886"/>
          <exon e_start="80976" e_stop="81026"/>
          <exon e_start="83113" e_stop="83334"/>
          <exon e_start="83455" e_stop="83557"/>
          <exon e_start="83680" e_stop="83903"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGACTTCCCAAGATATTGAAGGTACTTGTTTAGTTTTTCTTGATAATGTGTAATCATATTTTATGAATTTTACTCGTTTTGACTTTTTTGCTGGCCTTGTGATTTCACAGATATGCTGGATGAGCTACAAGAACATGTCGAATCAATTGATATGGCTAATGGTGAGTTCTTGGTGTAATTTAGTTATTCAGAAATGTGTGTGTATCATGATTTGGTAGTTACGCATATTACATAATTCTTGCTAACCAGCTAATTTGGAATTGAGGTCTTGTTGTGGAAGCTCTATCTGTTAGAGTGTCCCACATTAGTTGAGGGAATAGATTGTTGTCTCCTTATAGTATTGGACAATTCTTGTCACATGAGCTAGCTTTTGTTGTTGATTTAGGCCCAATTCTTGTCTCCATTTCTTAATATGGAGTTAGAGCTGCATCAGTATTTTCTTAGTTTACTGAATACTAGGCCCAATGTTAAATTGTTCATGCTCTGGTTATCTACTCTCGGTTATCAGAGGAGACTTAACATCTCACATTGTTTGAAAGAATGACCCCTTGTCTTTTATATATTTTTTGCTCAATCCTCACCTCTTAAGCTAGCTTTTGGGGTCCAGTGCCCAAGGCCAATTCACTTGATAATATCATGTAGGTTTAATTGAAGTTTCCAATGTTGCACGTCATGTGCTTGAACTTCGCCACATTCAAAATCACTGTATTTAAGTGGACGAGAGTAGAGGCGCGTACCAATTATTGCCTAGTTATGAGCCGGCCCTCGGAATTTCTCGGCAATTAAAACAAAATTGTCCTGATCAAAGAGTAGTTTCATTGGTTATATGAGTTCATTCTTTTGCTGTTCTTTGACAAAGGTAGTCTGTAGTTCATATCATTGTGTTCATCTAGGAGCCAAGATTGTAATTATTTCCTGTTTTGTGAAGTGTGACCTGACAAGCATCCTGTATTTCTGTGAGTAGATACTGACCAGCATGCATGTTGGATACTCCATAAATAGTGCATATTTGAAGAATCCGACACGGGTGCAACAACATTTTTGGAGAGTTTGAGCAACATAGTTCTGCAATGGTTTTTTCTTAGACTGAAGAATTTTTGTTCTGTCTCAAAATTGCAGTAATGATATTGCTCTCATCTTTTACCTATGATAAATTCAACGACGTACATCCACTCATTTCAAGGAAAACCATGTGAGAATAGGTGCTCAGTAAAGTTATGCAACTTCATGATAATCTCTATTGAAGATGTTTGTGCTCCATAATCACATATTCAAACAAATAAAAACCTCAGTCACACATATCCTCTTTGATGTTGCTCCTGATTTCCAGATGTTTATCTCTGGTTCCTAGTTATTGTAATTGGTTGTGTTCAGATAATAATTACTTGTTGAAAAACAAAAAATGAAGCATATTAGACCAAGCTGACACTATTAAGTATTCCATAATATACATCACTCTGATCCTCCATCATGCCTTTTTCCGTCATAAGCTTAATTCTGATAATTTATGTCAGCAGTCACAATTTTCTTTTAATATGTATTTCGTATGAATGTACTCTTGGTGTTATTGTGATTTGTGCTCTACATTATGAGGTCCTTGAGACTTCTAGTCAACCTAGAAGTAAAGAAAGAAAGGTCTACCAAGTAGAAAAGAAATAAATGAAGAGGTTTCTCGTTTACTTTGGTATGAATCAGTTAAGGGGCTTTCATGAGCATGAAGAGAATGGGTATATCCTACAGTTTGAGATGTTTTTACTCTGTTGCCTCTTTAAGAGCTTGGTAACTGGTTGCTTCCTTGAATTGAATGGAACACTTCAGAACAAGGCCTCCAAGAGTATCTAAGAGTATGGAACAAAGTAAAAAACATGTAATCTCTCATCCTTTACAGCATTAATGTTAAACTGGAATGCCTATGACTAAGCTATAACGGATATCAAGAGCCACTCGAACCTGGTAGGCCGTATTCCATGGTTACTGCTGGAAACTAGAAAAAGAGAAGAGGACCAGAAAGACCTGGGGGAAGTGGTCTATACTTTGTTAGTGTTACTGGCTCATAGGTAATCTTTACTATCAGCACTTGGACATTCCGCTCTTTGTGTCCTTTCCCTCCTCATTCCTTGGGGATTTCGTTCTCTTTACTTGCTTTGTTGTCATTTTCTGTTTGAGCTTTCAATATTTAATTATGTGGTATTCCCATTATTAAAAGTTTTAGTCTTATGCTCGATTTCTTTTATTGTTATTCGGCAGATCTGAATTCAATTGGTGGATTGGTGCCTCTTCTTGGTTACTTAAAGAACTCCCATGCAAACATTAGAGCCAAAGCGGCAGAAGTCGTAAGTACAATTGTTCAGAACAACCCGAGGAGCCAACAACTGGTAATGGAAGCTAATGGCCTAGAACCCCTTCTGTCAAATTTTACCTCAGATCCTGATGTTACTGCCCGCACTAAAGCTCTTGGTGCAATTTCATGTGAGTACTTTCCCCGTTATGATTTATTAGTTAAGTGTGCCCTTTAAATTTTGGTGTCATGTCATCTGTGTTTTCCAGTAGCGTTGATCAACTAGTTTTTTTATTTTTCCTTTATTCCAGCTTTAATTAGGCACAACAAGCCTGCCATTGCTGCATTTCGTCTTGCAAATGGTTATGCAGGTTTAAGAGATGCTTTGAGTTCTGAGAGTGTGAGATTTCAGAGGTACTATTTTCTATATCATGCACTAGACGTTTCTGAATCAACCATTGATGAAGCTGCTGCTTTCCCGTAAACCTTCCTCTTTTATATTCCTTTCTAATAGGTATAGTCCTGTTCTTTTGCAGGAAAGCCCTTAACTTGATCCATTATTTACTACATGAGAATCATTCAGACTGCAATGTAGTGACTGAGCTAGGATTTCCTCGAGTTATGATGCATCTAGCCTCTAGTGATGATGGAGAAGTGCGAGAGGGTGCCCTACAAGGTCTTCTTGACCTTGCCCAAGACAAGACAGGAGAGGTTGCTGGCTCCTCATCGACTGAAGAAAATGAGAAACTCAAGCAAATAC</genome_strand>
        <mrna_strand>GTGACTTCCCAAGATATTGAAG.........................................................................................ATATGCTGGATGAGCTACAAGAACATGTCGAATCAATTGATATGGCTAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGAATTCAATTGGTGGATTGGTGCCTCTTCTTGGTTACTTAAAGAACTCCCATGCAAACATTAGAGCCAAAGCGGCAGAAGTCGTAAGTACAATTGTTCAGAACAACCCGAGGAGCCAACAACTGGTAATGGAAGCTAATGGCCTAGAACCCCTTCTGTCAAATTTTACCTCAGATCCTGATGTTACTGCCCGCACTAAAGCTCTTGGTGCAATTTCAT........................................................................................................................CTTTAATTAGGCACAACAAGCCTGCCATTGCTGCATTTCGTCTTGCAAATGGTTATGCAGGTTTAAGAGATGCTTTGAGTTCTGAGAGTGTGAGATTTCAGAG..........................................................................................................................GAAAGCCCTTAACTTGATCCATTATTTACTACATGAGAATCATTCAGACTGCAATGTAGTGACTGAGCTAGGATTTCCTCGAGTTATGATGCATCTAGCCTCTAGTGATGATGGAGAAGTGCGAGAGGGTGCCCTACAAGGTCTTCTTGACCTTGCCCAAGACAAGACAGGAGAGGTTGCTGGCTCCTCATCGACTGAAAAAAATGAGAAACTCAAGCAAATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E700866" ref_strand="+" ref_description="SGN-E700866 [FA14BE09]">
      <seq>gagctacaagaacatgtcgaatcaattgatatggctaatgatctgaattcaattggtggattggtgcctcttcttggttacttaaagaactcccatgcaaacattagagccaaagcggcagaagtcgtaagtacaattgttcagaacaacccgaggagccaacaactggtaatggaagctaatggcctagaaccccttctgtcaaattttacctcagatcctgatgttactgcccgcactaaagctcttggtgcaatttcatctttaattaggcacaacaagcctgccattgctgcatttcgtcttgcaaatggttatgcaggtttaagagatgctttgagttctgagagtgtgagatttcagaggaaagcccttaacttgatccattatttactacatgagaatcattcagactgcaatgtagtgactgagctaggatttcctcgagttatgatgcatctagcctctagtgatgatggagaagtgcgagagggtgccctacaaggtcttcttgaccttgcccaagacaagacaggagaggttgctggctcctcatcgactgaagaaaatgagaaactcaagcaaatactccaggagcgaattaaggggatttcctctatgtcacctgaagatcttggtgctgctaaagaagagaggcaacttgtagattccctctggaatacttgctacaatgaaccttcctctcttagagagaaaggcctagttgttctccccggagaggatgcattaccacctgatgttgctagcaagcattttgaacctcctctgagagcttgggctgcaaataggaacgaggatactaagccaagtaacgaaaagaaacaggctcccttattgctag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="80687" stop="84476"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80987" g_stop="81026" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81027" i_stop="83112" i_length="2086">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83113" g_stop="83334" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="262" r_length="222" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83335" i_stop="83454" i_length="120">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83455" g_stop="83557" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="365" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83558" i_stop="83679" i_length="122">
            <donor d_prob="0.700" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83680" g_stop="84176" g_length="497"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="862" r_length="497" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E700866" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>862</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700866" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80987" e_stop="81026"/>
          <exon e_start="83113" e_stop="83334"/>
          <exon e_start="83455" e_stop="83557"/>
          <exon e_start="83680" e_stop="84176"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCTACAAGAACATGTCGAATCAATTGATATGGCTAATGGTGAGTTCTTGGTGTAATTTAGTTATTCAGAAATGTGTGTGTATCATGATTTGGTAGTTACGCATATTACATAATTCTTGCTAACCAGCTAATTTGGAATTGAGGTCTTGTTGTGGAAGCTCTATCTGTTAGAGTGTCCCACATTAGTTGAGGGAATAGATTGTTGTCTCCTTATAGTATTGGACAATTCTTGTCACATGAGCTAGCTTTTGTTGTTGATTTAGGCCCAATTCTTGTCTCCATTTCTTAATATGGAGTTAGAGCTGCATCAGTATTTTCTTAGTTTACTGAATACTAGGCCCAATGTTAAATTGTTCATGCTCTGGTTATCTACTCTCGGTTATCAGAGGAGACTTAACATCTCACATTGTTTGAAAGAATGACCCCTTGTCTTTTATATATTTTTTGCTCAATCCTCACCTCTTAAGCTAGCTTTTGGGGTCCAGTGCCCAAGGCCAATTCACTTGATAATATCATGTAGGTTTAATTGAAGTTTCCAATGTTGCACGTCATGTGCTTGAACTTCGCCACATTCAAAATCACTGTATTTAAGTGGACGAGAGTAGAGGCGCGTACCAATTATTGCCTAGTTATGAGCCGGCCCTCGGAATTTCTCGGCAATTAAAACAAAATTGTCCTGATCAAAGAGTAGTTTCATTGGTTATATGAGTTCATTCTTTTGCTGTTCTTTGACAAAGGTAGTCTGTAGTTCATATCATTGTGTTCATCTAGGAGCCAAGATTGTAATTATTTCCTGTTTTGTGAAGTGTGACCTGACAAGCATCCTGTATTTCTGTGAGTAGATACTGACCAGCATGCATGTTGGATACTCCATAAATAGTGCATATTTGAAGAATCCGACACGGGTGCAACAACATTTTTGGAGAGTTTGAGCAACATAGTTCTGCAATGGTTTTTTCTTAGACTGAAGAATTTTTGTTCTGTCTCAAAATTGCAGTAATGATATTGCTCTCATCTTTTACCTATGATAAATTCAACGACGTACATCCACTCATTTCAAGGAAAACCATGTGAGAATAGGTGCTCAGTAAAGTTATGCAACTTCATGATAATCTCTATTGAAGATGTTTGTGCTCCATAATCACATATTCAAACAAATAAAAACCTCAGTCACACATATCCTCTTTGATGTTGCTCCTGATTTCCAGATGTTTATCTCTGGTTCCTAGTTATTGTAATTGGTTGTGTTCAGATAATAATTACTTGTTGAAAAACAAAAAATGAAGCATATTAGACCAAGCTGACACTATTAAGTATTCCATAATATACATCACTCTGATCCTCCATCATGCCTTTTTCCGTCATAAGCTTAATTCTGATAATTTATGTCAGCAGTCACAATTTTCTTTTAATATGTATTTCGTATGAATGTACTCTTGGTGTTATTGTGATTTGTGCTCTACATTATGAGGTCCTTGAGACTTCTAGTCAACCTAGAAGTAAAGAAAGAAAGGTCTACCAAGTAGAAAAGAAATAAATGAAGAGGTTTCTCGTTTACTTTGGTATGAATCAGTTAAGGGGCTTTCATGAGCATGAAGAGAATGGGTATATCCTACAGTTTGAGATGTTTTTACTCTGTTGCCTCTTTAAGAGCTTGGTAACTGGTTGCTTCCTTGAATTGAATGGAACACTTCAGAACAAGGCCTCCAAGAGTATCTAAGAGTATGGAACAAAGTAAAAAACATGTAATCTCTCATCCTTTACAGCATTAATGTTAAACTGGAATGCCTATGACTAAGCTATAACGGATATCAAGAGCCACTCGAACCTGGTAGGCCGTATTCCATGGTTACTGCTGGAAACTAGAAAAAGAGAAGAGGACCAGAAAGACCTGGGGGAAGTGGTCTATACTTTGTTAGTGTTACTGGCTCATAGGTAATCTTTACTATCAGCACTTGGACATTCCGCTCTTTGTGTCCTTTCCCTCCTCATTCCTTGGGGATTTCGTTCTCTTTACTTGCTTTGTTGTCATTTTCTGTTTGAGCTTTCAATATTTAATTATGTGGTATTCCCATTATTAAAAGTTTTAGTCTTATGCTCGATTTCTTTTATTGTTATTCGGCAGATCTGAATTCAATTGGTGGATTGGTGCCTCTTCTTGGTTACTTAAAGAACTCCCATGCAAACATTAGAGCCAAAGCGGCAGAAGTCGTAAGTACAATTGTTCAGAACAACCCGAGGAGCCAACAACTGGTAATGGAAGCTAATGGCCTAGAACCCCTTCTGTCAAATTTTACCTCAGATCCTGATGTTACTGCCCGCACTAAAGCTCTTGGTGCAATTTCATGTGAGTACTTTCCCCGTTATGATTTATTAGTTAAGTGTGCCCTTTAAATTTTGGTGTCATGTCATCTGTGTTTTCCAGTAGCGTTGATCAACTAGTTTTTTTATTTTTCCTTTATTCCAGCTTTAATTAGGCACAACAAGCCTGCCATTGCTGCATTTCGTCTTGCAAATGGTTATGCAGGTTTAAGAGATGCTTTGAGTTCTGAGAGTGTGAGATTTCAGAGGTACTATTTTCTATATCATGCACTAGACGTTTCTGAATCAACCATTGATGAAGCTGCTGCTTTCCCGTAAACCTTCCTCTTTTATATTCCTTTCTAATAGGTATAGTCCTGTTCTTTTGCAGGAAAGCCCTTAACTTGATCCATTATTTACTACATGAGAATCATTCAGACTGCAATGTAGTGACTGAGCTAGGATTTCCTCGAGTTATGATGCATCTAGCCTCTAGTGATGATGGAGAAGTGCGAGAGGGTGCCCTACAAGGTCTTCTTGACCTTGCCCAAGACAAGACAGGAGAGGTTGCTGGCTCCTCATCGACTGAAGAAAATGAGAAACTCAAGCAAATACTCCAGGAGCGAATTAAGGGGATTTCCTCTATGTCACCTGAAGATCTTGGTGCTGCTAAAGAAGAGAGGCAACTTGTAGATTCCCTCTGGAATACTTGCTACAATGAACCTTCCTCTCTTAGAGAGAAAGGCCTAGTTGTTCTCCCCGGAGAGGATGCATTACCACCTGATGTTGCTAGCAAGCATTTTGAACCTCCTCTGAGAGCTTGGGCTGCAAATAGGAACGAGGATACTAAGCCAAGTAACGAAAAGAAACAGGCTCCCTTATTGCTAG</genome_strand>
        <mrna_strand>GAGCTACAAGAACATGTCGAATCAATTGATATGGCTAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGAATTCAATTGGTGGATTGGTGCCTCTTCTTGGTTACTTAAAGAACTCCCATGCAAACATTAGAGCCAAAGCGGCAGAAGTCGTAAGTACAATTGTTCAGAACAACCCGAGGAGCCAACAACTGGTAATGGAAGCTAATGGCCTAGAACCCCTTCTGTCAAATTTTACCTCAGATCCTGATGTTACTGCCCGCACTAAAGCTCTTGGTGCAATTTCAT........................................................................................................................CTTTAATTAGGCACAACAAGCCTGCCATTGCTGCATTTCGTCTTGCAAATGGTTATGCAGGTTTAAGAGATGCTTTGAGTTCTGAGAGTGTGAGATTTCAGAG..........................................................................................................................GAAAGCCCTTAACTTGATCCATTATTTACTACATGAGAATCATTCAGACTGCAATGTAGTGACTGAGCTAGGATTTCCTCGAGTTATGATGCATCTAGCCTCTAGTGATGATGGAGAAGTGCGAGAGGGTGCCCTACAAGGTCTTCTTGACCTTGCCCAAGACAAGACAGGAGAGGTTGCTGGCTCCTCATCGACTGAAGAAAATGAGAAACTCAAGCAAATACTCCAGGAGCGAATTAAGGGGATTTCCTCTATGTCACCTGAAGATCTTGGTGCTGCTAAAGAAGAGAGGCAACTTGTAGATTCCCTCTGGAATACTTGCTACAATGAACCTTCCTCTCTTAGAGAGAAAGGCCTAGTTGTTCTCCCCGGAGAGGATGCATTACCACCTGATGTTGCTAGCAAGCATTTTGAACCTCCTCTGAGAGCTTGGGCTGCAAATAGGAACGAGGATACTAAGCCAAGTAACGAAAAGAAACAGGCTCCCTTATTGCTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E554222" ref_strand="+" ref_description="SGN-E554222 [cTSC-3-J4]">
      <seq>aattctattggtggattggtgcctcttcttggttacttaaagaactcccatgcaaacattagagccaaagcggcagaagtcgtaagtacaattgttcagaacaacccgaggagccaacaactggtaatggaagctaatggcctagaaccccttctgtcaaattttacctcagatcctgatgttactgcccgcactaaagctcttggtgcaatttcatctttaattaggcacaacaagcctgccattgctgcatttcgtcttgcaaatggttatgcaggtttaagagatgctttgagttctgagagtgtgagatttcagaggaaagcccttaacttgatccattatttactacatgagaatcattcagactgcaatgtagtgactgagctaggatttcctcaagttatgatgcatctagcctctagtgatgatggagaagtgcgagagggtgccctacaaggtcctcttgaccttgcccaagacaagacaggagaggttgctggctcctcatcgactgaagaaaatgagaaactcaggcaaattactccaggagcgaattaaggggatttcctctatggcacctgaagatcttggtgctgctaaagaagagaggcaacttgtagattccctctggaatacttgctacaatgaacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="82818" stop="84313"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83118" g_stop="83334" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83335" i_stop="83454" i_length="120">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83455" g_stop="83557" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="320" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83558" i_stop="83679" i_length="122">
            <donor d_prob="0.700" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83680" g_stop="84013" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="655" r_length="335" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E554222" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E554222" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83118" e_stop="83334"/>
          <exon e_start="83455" e_stop="83557"/>
          <exon e_start="83680" e_stop="84013"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCAATTGGTGGATTGGTGCCTCTTCTTGGTTACTTAAAGAACTCCCATGCAAACATTAGAGCCAAAGCGGCAGAAGTCGTAAGTACAATTGTTCAGAACAACCCGAGGAGCCAACAACTGGTAATGGAAGCTAATGGCCTAGAACCCCTTCTGTCAAATTTTACCTCAGATCCTGATGTTACTGCCCGCACTAAAGCTCTTGGTGCAATTTCATGTGAGTACTTTCCCCGTTATGATTTATTAGTTAAGTGTGCCCTTTAAATTTTGGTGTCATGTCATCTGTGTTTTCCAGTAGCGTTGATCAACTAGTTTTTTTATTTTTCCTTTATTCCAGCTTTAATTAGGCACAACAAGCCTGCCATTGCTGCATTTCGTCTTGCAAATGGTTATGCAGGTTTAAGAGATGCTTTGAGTTCTGAGAGTGTGAGATTTCAGAGGTACTATTTTCTATATCATGCACTAGACGTTTCTGAATCAACCATTGATGAAGCTGCTGCTTTCCCGTAAACCTTCCTCTTTTATATTCCTTTCTAATAGGTATAGTCCTGTTCTTTTGCAGGAAAGCCCTTAACTTGATCCATTATTTACTACATGAGAATCATTCAGACTGCAATGTAGTGACTGAGCTAGGATTTCCTCGAGTTATGATGCATCTAGCCTCTAGTGATGATGGAGAAGTGCGAGAGGGTGCCCTACAAGGTCTTCTTGACCTTGCCCAAGACAAGACAGGAGAGGTTGCTGGCTCCTCATCGACTGAAGAAAATGAGAAACTCAAGCAAA-TACTCCAGGAGCGAATTAAGGGGATTTCCTCTATGTCACCTGAAGATCTTGGTGCTGCTAAAGAAGAGAGGCAACTTGTAGATTCCCTCTGGAATACTTGCTACAATGAACCT</genome_strand>
        <mrna_strand>AATTCTATTGGTGGATTGGTGCCTCTTCTTGGTTACTTAAAGAACTCCCATGCAAACATTAGAGCCAAAGCGGCAGAAGTCGTAAGTACAATTGTTCAGAACAACCCGAGGAGCCAACAACTGGTAATGGAAGCTAATGGCCTAGAACCCCTTCTGTCAAATTTTACCTCAGATCCTGATGTTACTGCCCGCACTAAAGCTCTTGGTGCAATTTCAT........................................................................................................................CTTTAATTAGGCACAACAAGCCTGCCATTGCTGCATTTCGTCTTGCAAATGGTTATGCAGGTTTAAGAGATGCTTTGAGTTCTGAGAGTGTGAGATTTCAGAG..........................................................................................................................GAAAGCCCTTAACTTGATCCATTATTTACTACATGAGAATCATTCAGACTGCAATGTAGTGACTGAGCTAGGATTTCCTCAAGTTATGATGCATCTAGCCTCTAGTGATGATGGAGAAGTGCGAGAGGGTGCCCTACAAGGTCCTCTTGACCTTGCCCAAGACAAGACAGGAGAGGTTGCTGGCTCCTCATCGACTGAAGAAAATGAGAAACTCAGGCAAATTACTCCAGGAGCGAATTAAGGGGATTTCCTCTATGGCACCTGAAGATCTTGGTGCTGCTAAAGAAGAGAGGCAACTTGTAGATTCCCTCTGGAATACTTGCTACAATGAACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E705702" ref_strand="+" ref_description="SGN-E705702 [FA27DF03]">
      <seq>tggtgcctcttcttggttacttaaagaactcccatgcaaacattagagccaaagcggcagaagtcgtaagtacaattgttcagaacaacccgaggagccaacaactggtaatggaagctaatggcctagaaccccttctgtcaaattttacctcagatcctgatgttactgcccgcactaaagctcttggtgcaatttcatctttaattaggcacaacaagcctgccattgctgcatttcgtcttgcaaatggttatgcaggtttaagagatgctttgagttctgagagtgtgagatttcagaggaaagcccttaacttgatccattatttactacatgagaatcattcagactgcaatgtagtgactgagctaggatttcctcgagttatgatgcatctagcctctagtgatgatggagaagtgcgagagggtgccctacaaggtcttcttgaccttgcccaagacaagacaggagaggttgctggctcctcatcgactgaagaaaatgagaaactcaagcaaatactccaggagcgaattaaggggatttcctctatgtcacctgaagatcttggtgctgctaaagaagagaggcaacttgtagattccctctggaatacttgctacaatgaaccttcctctcttagagagaaaggcctagttgttctccccggagaggatgcattaccacctgatgttgctagcaagcattttgaacctcctctgagagcttgggctgcaaataggaacgaggatactaagccaagtaacgaaaagaaacaggctcccttattgctaggcctaggtccacctacacagggtcctcctgtgcagaatagctctagtggagccatgtctggggaagaaaatagagacacctctgcatgatgtacatttttgggcaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="82834" stop="84584"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83134" g_stop="83334" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83335" i_stop="83454" i_length="120">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83455" g_stop="83557" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="304" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83558" i_stop="83679" i_length="122">
            <donor d_prob="0.700" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83680" g_stop="84284" g_length="605"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="909" r_length="605" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E705702" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>909</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705702" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83134" e_stop="83334"/>
          <exon e_start="83455" e_stop="83557"/>
          <exon e_start="83680" e_stop="84284"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGCCTCTTCTTGGTTACTTAAAGAACTCCCATGCAAACATTAGAGCCAAAGCGGCAGAAGTCGTAAGTACAATTGTTCAGAACAACCCGAGGAGCCAACAACTGGTAATGGAAGCTAATGGCCTAGAACCCCTTCTGTCAAATTTTACCTCAGATCCTGATGTTACTGCCCGCACTAAAGCTCTTGGTGCAATTTCATGTGAGTACTTTCCCCGTTATGATTTATTAGTTAAGTGTGCCCTTTAAATTTTGGTGTCATGTCATCTGTGTTTTCCAGTAGCGTTGATCAACTAGTTTTTTTATTTTTCCTTTATTCCAGCTTTAATTAGGCACAACAAGCCTGCCATTGCTGCATTTCGTCTTGCAAATGGTTATGCAGGTTTAAGAGATGCTTTGAGTTCTGAGAGTGTGAGATTTCAGAGGTACTATTTTCTATATCATGCACTAGACGTTTCTGAATCAACCATTGATGAAGCTGCTGCTTTCCCGTAAACCTTCCTCTTTTATATTCCTTTCTAATAGGTATAGTCCTGTTCTTTTGCAGGAAAGCCCTTAACTTGATCCATTATTTACTACATGAGAATCATTCAGACTGCAATGTAGTGACTGAGCTAGGATTTCCTCGAGTTATGATGCATCTAGCCTCTAGTGATGATGGAGAAGTGCGAGAGGGTGCCCTACAAGGTCTTCTTGACCTTGCCCAAGACAAGACAGGAGAGGTTGCTGGCTCCTCATCGACTGAAGAAAATGAGAAACTCAAGCAAATACTCCAGGAGCGAATTAAGGGGATTTCCTCTATGTCACCTGAAGATCTTGGTGCTGCTAAAGAAGAGAGGCAACTTGTAGATTCCCTCTGGAATACTTGCTACAATGAACCTTCCTCTCTTAGAGAGAAAGGCCTAGTTGTTCTCCCCGGAGAGGATGCATTACCACCTGATGTTGCTAGCAAGCATTTTGAACCTCCTCTGAGAGCTTGGGCTGCAAATAGGAACGAGGATACTAAGCCAAGTAACGAAAAGAAACAGGCTCCCTTATTGCTAGGCCTAGGTCCACCTACACAGGGTCCTCCTGTGCAGAATAGCTCTAGTGGAGCCATGTCTGGGGAAGAAAATAGAGACACCTCTGCATGATGTACATTTTTGGGCAATA</genome_strand>
        <mrna_strand>TGGTGCCTCTTCTTGGTTACTTAAAGAACTCCCATGCAAACATTAGAGCCAAAGCGGCAGAAGTCGTAAGTACAATTGTTCAGAACAACCCGAGGAGCCAACAACTGGTAATGGAAGCTAATGGCCTAGAACCCCTTCTGTCAAATTTTACCTCAGATCCTGATGTTACTGCCCGCACTAAAGCTCTTGGTGCAATTTCAT........................................................................................................................CTTTAATTAGGCACAACAAGCCTGCCATTGCTGCATTTCGTCTTGCAAATGGTTATGCAGGTTTAAGAGATGCTTTGAGTTCTGAGAGTGTGAGATTTCAGAG..........................................................................................................................GAAAGCCCTTAACTTGATCCATTATTTACTACATGAGAATCATTCAGACTGCAATGTAGTGACTGAGCTAGGATTTCCTCGAGTTATGATGCATCTAGCCTCTAGTGATGATGGAGAAGTGCGAGAGGGTGCCCTACAAGGTCTTCTTGACCTTGCCCAAGACAAGACAGGAGAGGTTGCTGGCTCCTCATCGACTGAAGAAAATGAGAAACTCAAGCAAATACTCCAGGAGCGAATTAAGGGGATTTCCTCTATGTCACCTGAAGATCTTGGTGCTGCTAAAGAAGAGAGGCAACTTGTAGATTCCCTCTGGAATACTTGCTACAATGAACCTTCCTCTCTTAGAGAGAAAGGCCTAGTTGTTCTCCCCGGAGAGGATGCATTACCACCTGATGTTGCTAGCAAGCATTTTGAACCTCCTCTGAGAGCTTGGGCTGCAAATAGGAACGAGGATACTAAGCCAAGTAACGAAAAGAAACAGGCTCCCTTATTGCTAGGCCTAGGTCCACCTACACAGGGTCCTCCTGTGCAGAATAGCTCTAGTGGAGCCATGTCTGGGGAAGAAAATAGAGACACCTCTGCATGATGTACATTTTTGGGCAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E709042" ref_strand="+" ref_description="SGN-E709042 [FA42CB04]">
      <seq>caatcattagagccaaagcggcagaagtcgtaagtacaattgctcagaacaacccgaggagccaacaactggtaatggaagctaatggcctagaaccccttctgtcaaattttacctcagatcctgatgttactgcccgcactaaagctcttggtgcaatttcatctttaattaggcacaacaagcctgccattgctgcatttcgtcttgcaaatggttatgcaggtttaagagatgctttgagttctgagagtgtgagatttcagaggaaagcccttaacttgatccattatttactacatgagaatcattcagactgcaatgtagtgactgagctaggatttcctcgagttatgatgcatctagcctctagtgatgatggagaagtgcgagagggtgccctacaaggtcttcttgaccttgcccaagacaagacaggagaggttgctggctcctcatcgactgaagaaaatgagaaactcaagcaaatactccaggagcgaattaaggggatttcctctatgtcacctgaagatcttggtgctgctaaagaagagaggcaacttgtagattccctctggaatacttgctacaatgaaccttcctctcttagagagaaaggcctagttgttctccccggagaggatgcattaccacctgatgttgctagcaagcattttgaacctcctctgagagcttgggctgcaaataggaacgaggatactaagccaagtaacgaaaagaaacaggctcccttattgctaggcctangtccacctacacagggtcctcctgtgcagaatagctctagtgaagccatgtctgggggaaaaaatagagacacctctgcatgatgtacatttttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="82870" stop="84578"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83170" g_stop="83334" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83335" i_stop="83454" i_length="120">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83455" g_stop="83557" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="268" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83558" i_stop="83679" i_length="122">
            <donor d_prob="0.700" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83680" g_stop="84278" g_length="599"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="867" r_length="599" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E709042" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>867</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709042" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83170" e_stop="83334"/>
          <exon e_start="83455" e_stop="83557"/>
          <exon e_start="83680" e_stop="84278"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACATTAGAGCCAAAGCGGCAGAAGTCGTAAGTACAATTGTTCAGAACAACCCGAGGAGCCAACAACTGGTAATGGAAGCTAATGGCCTAGAACCCCTTCTGTCAAATTTTACCTCAGATCCTGATGTTACTGCCCGCACTAAAGCTCTTGGTGCAATTTCATGTGAGTACTTTCCCCGTTATGATTTATTAGTTAAGTGTGCCCTTTAAATTTTGGTGTCATGTCATCTGTGTTTTCCAGTAGCGTTGATCAACTAGTTTTTTTATTTTTCCTTTATTCCAGCTTTAATTAGGCACAACAAGCCTGCCATTGCTGCATTTCGTCTTGCAAATGGTTATGCAGGTTTAAGAGATGCTTTGAGTTCTGAGAGTGTGAGATTTCAGAGGTACTATTTTCTATATCATGCACTAGACGTTTCTGAATCAACCATTGATGAAGCTGCTGCTTTCCCGTAAACCTTCCTCTTTTATATTCCTTTCTAATAGGTATAGTCCTGTTCTTTTGCAGGAAAGCCCTTAACTTGATCCATTATTTACTACATGAGAATCATTCAGACTGCAATGTAGTGACTGAGCTAGGATTTCCTCGAGTTATGATGCATCTAGCCTCTAGTGATGATGGAGAAGTGCGAGAGGGTGCCCTACAAGGTCTTCTTGACCTTGCCCAAGACAAGACAGGAGAGGTTGCTGGCTCCTCATCGACTGAAGAAAATGAGAAACTCAAGCAAATACTCCAGGAGCGAATTAAGGGGATTTCCTCTATGTCACCTGAAGATCTTGGTGCTGCTAAAGAAGAGAGGCAACTTGTAGATTCCCTCTGGAATACTTGCTACAATGAACCTTCCTCTCTTAGAGAGAAAGGCCTAGTTGTTCTCCCCGGAGAGGATGCATTACCACCTGATGTTGCTAGCAAGCATTTTGAACCTCCTCTGAGAGCTTGGGCTGCAAATAGGAACGAGGATACTAAGCCAAGTAACGAAAAGAAACAGGCTCCCTTATTGCTAGGCCTAGGTCCACCTACACAGGGTCCTCCTGTGCAGAATAGCTCTAGTGGAGCCATGTCTGGGGAAGAAAATAGAGACACCTCTGCATGATGTACATTTTTGG</genome_strand>
        <mrna_strand>CAATCATTAGAGCCAAAGCGGCAGAAGTCGTAAGTACAATTGCTCAGAACAACCCGAGGAGCCAACAACTGGTAATGGAAGCTAATGGCCTAGAACCCCTTCTGTCAAATTTTACCTCAGATCCTGATGTTACTGCCCGCACTAAAGCTCTTGGTGCAATTTCAT........................................................................................................................CTTTAATTAGGCACAACAAGCCTGCCATTGCTGCATTTCGTCTTGCAAATGGTTATGCAGGTTTAAGAGATGCTTTGAGTTCTGAGAGTGTGAGATTTCAGAG..........................................................................................................................GAAAGCCCTTAACTTGATCCATTATTTACTACATGAGAATCATTCAGACTGCAATGTAGTGACTGAGCTAGGATTTCCTCGAGTTATGATGCATCTAGCCTCTAGTGATGATGGAGAAGTGCGAGAGGGTGCCCTACAAGGTCTTCTTGACCTTGCCCAAGACAAGACAGGAGAGGTTGCTGGCTCCTCATCGACTGAAGAAAATGAGAAACTCAAGCAAATACTCCAGGAGCGAATTAAGGGGATTTCCTCTATGTCACCTGAAGATCTTGGTGCTGCTAAAGAAGAGAGGCAACTTGTAGATTCCCTCTGGAATACTTGCTACAATGAACCTTCCTCTCTTAGAGAGAAAGGCCTAGTTGTTCTCCCCGGAGAGGATGCATTACCACCTGATGTTGCTAGCAAGCATTTTGAACCTCCTCTGAGAGCTTGGGCTGCAAATAGGAACGAGGATACTAAGCCAAGTAACGAAAAGAAACAGGCTCCCTTATTGCTAGGCCTANGTCCACCTACACAGGGTCCTCCTGTGCAGAATAGCTCTAGTGAAGCCATGTCTGGGGGAAAAAATAGAGACACCTCTGCATGATGTACATTTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E263131" ref_strand="+" ref_description="SGN-E263131 [cLEG-62-G1]">
      <seq>agaagtcgtaagtacaattgttcagaacaacccgaggagccaacaactggtaatggaagctaatggcctagaaccccttctgtcaaattttacctcagatcctgatgttactgcccgcactaaagctcttggtgcaatttcatctttaattaggcacaacaagcctgccattgctgcatttcgtcttgcaaatgggtatgcaggtttaagagatgcttttgagtctgagagtgtgagatttcagaagaaaagcctttacttggatccattatttactacatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="82892" stop="84015"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83192" g_stop="83334" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83335" i_stop="83454" i_length="120">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83455" g_stop="83557" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="246" r_length="103" r_score="0.942"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83558" i_stop="83679" i_length="122">
            <donor d_prob="0.700" d_score="0.90"/>
            <acceptor a_prob="0.925" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83680" g_stop="83715" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="283" r_length="37" r_score="0.861"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E263131" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>282</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E263131" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83192" e_stop="83334"/>
          <exon e_start="83455" e_stop="83557"/>
          <exon e_start="83680" e_stop="83715"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGTCGTAAGTACAATTGTTCAGAACAACCCGAGGAGCCAACAACTGGTAATGGAAGCTAATGGCCTAGAACCCCTTCTGTCAAATTTTACCTCAGATCCTGATGTTACTGCCCGCACTAAAGCTCTTGGTGCAATTTCATGTGAGTACTTTCCCCGTTATGATTTATTAGTTAAGTGTGCCCTTTAAATTTTGGTGTCATGTCATCTGTGTTTTCCAGTAGCGTTGATCAACTAGTTTTTTTATTTTTCCTTTATTCCAGCTTTAATTAGGCACAACAAGCCTGCCATTGCTGCATTTCGTCTTGCAAATGGTTATGCAGGTTTAAGAGATGCTTTGAGTTCTGAGAGTGTGAGATTTCAGAGGTACTATTTTCTATATCATGCACTAGACGTTTCTGAATCAACCATTGATGAAGCTGCTGCTTTCCCGTAAACCTTCCTCTTTTATATTCCTTTCTAATAGGTATAGTCCTGTTCTTTTGCAGGAAAGCCCTTAACTT-GATCCATTATTTACTACATGA</genome_strand>
        <mrna_strand>AGAAGTCGTAAGTACAATTGTTCAGAACAACCCGAGGAGCCAACAACTGGTAATGGAAGCTAATGGCCTAGAACCCCTTCTGTCAAATTTTACCTCAGATCCTGATGTTACTGCCCGCACTAAAGCTCTTGGTGCAATTTCAT........................................................................................................................CTTTAATTAGGCACAACAAGCCTGCCATTGCTGCATTTCGTCTTGCAAATGGGTATGCAGGTTTAAGAGATGCTTTTGAGTCTGAGAGTGTGAGATTTCAGAA..........................................................................................................................GAAAAGCCTTTACTTGGATCCATTATTTACTACATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E704460" ref_strand="+" ref_description="SGN-E704460 [FA24BD12]">
      <seq>caattgttcagaacaacccgaggagccaacaactggtaatggaagctaatggcctagaaccccttctgtcaaattttacctcagatcctgatgttactgcccgcactaaagctcttggtgcaatttcatctttaattaggcacaacaagcctgccattgctgcatttcgtcttgcaaatggttatgcaggtttaagagatgctttgagttctgagagtgtgagatttcagaggaaagcccttaacttgatccattatttactacatgagaatcattcagactgcaatgtagtgactgagctaggatttcctcgagttatgatgcatctagccgctagtgatgatggagaagtgcgagagggtgccctacaaggtcttcttgaccttgcccaagacaagacaggagaggttgctggctcctcatcgactgaagaaaatgagaaactcaagcaaatactccaggagcgaattaaggggatttcctctatgtcacctgaagatcttggtgctgctaaagaagagaggcaacttgtagattccctctggaatacttgctacaatgaaccttcctctcttagagagaaaggcctagttgttctccccggagaggatgcattaccacctgatgttgctagcaagcattttgaacctcctctgagagcttgggctgcaaataggaacgaggatactaagccaagtaacgaaaagaaacaggctcccttattgctaggcctaggtccacctacacagggtcctcctgtgcagaatagctctagtggagccatgtctggggaagaaaatagagacccctctgcatgatgtacatttttgggcaataccagggtattcagcttaatatatcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="82906" stop="84611"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83206" g_stop="83334" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83335" i_stop="83454" i_length="120">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83455" g_stop="83557" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="232" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83558" i_stop="83679" i_length="122">
            <donor d_prob="0.700" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83680" g_stop="84311" g_length="632"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="864" r_length="632" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E704460" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>864</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704460" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83206" e_stop="83334"/>
          <exon e_start="83455" e_stop="83557"/>
          <exon e_start="83680" e_stop="84311"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTGTTCAGAACAACCCGAGGAGCCAACAACTGGTAATGGAAGCTAATGGCCTAGAACCCCTTCTGTCAAATTTTACCTCAGATCCTGATGTTACTGCCCGCACTAAAGCTCTTGGTGCAATTTCATGTGAGTACTTTCCCCGTTATGATTTATTAGTTAAGTGTGCCCTTTAAATTTTGGTGTCATGTCATCTGTGTTTTCCAGTAGCGTTGATCAACTAGTTTTTTTATTTTTCCTTTATTCCAGCTTTAATTAGGCACAACAAGCCTGCCATTGCTGCATTTCGTCTTGCAAATGGTTATGCAGGTTTAAGAGATGCTTTGAGTTCTGAGAGTGTGAGATTTCAGAGGTACTATTTTCTATATCATGCACTAGACGTTTCTGAATCAACCATTGATGAAGCTGCTGCTTTCCCGTAAACCTTCCTCTTTTATATTCCTTTCTAATAGGTATAGTCCTGTTCTTTTGCAGGAAAGCCCTTAACTTGATCCATTATTTACTACATGAGAATCATTCAGACTGCAATGTAGTGACTGAGCTAGGATTTCCTCGAGTTATGATGCATCTAGCCTCTAGTGATGATGGAGAAGTGCGAGAGGGTGCCCTACAAGGTCTTCTTGACCTTGCCCAAGACAAGACAGGAGAGGTTGCTGGCTCCTCATCGACTGAAGAAAATGAGAAACTCAAGCAAATACTCCAGGAGCGAATTAAGGGGATTTCCTCTATGTCACCTGAAGATCTTGGTGCTGCTAAAGAAGAGAGGCAACTTGTAGATTCCCTCTGGAATACTTGCTACAATGAACCTTCCTCTCTTAGAGAGAAAGGCCTAGTTGTTCTCCCCGGAGAGGATGCATTACCACCTGATGTTGCTAGCAAGCATTTTGAACCTCCTCTGAGAGCTTGGGCTGCAAATAGGAACGAGGATACTAAGCCAAGTAACGAAAAGAAACAGGCTCCCTTATTGCTAGGCCTAGGTCCACCTACACAGGGTCCTCCTGTGCAGAATAGCTCTAGTGGAGCCATGTCTGGGGAAGAAAATAGAGACACCTCTGCATGATGTACATTTTTGGGCAATACCAGGTTATTCAGCTTAATATATCTTT</genome_strand>
        <mrna_strand>CAATTGTTCAGAACAACCCGAGGAGCCAACAACTGGTAATGGAAGCTAATGGCCTAGAACCCCTTCTGTCAAATTTTACCTCAGATCCTGATGTTACTGCCCGCACTAAAGCTCTTGGTGCAATTTCAT........................................................................................................................CTTTAATTAGGCACAACAAGCCTGCCATTGCTGCATTTCGTCTTGCAAATGGTTATGCAGGTTTAAGAGATGCTTTGAGTTCTGAGAGTGTGAGATTTCAGAG..........................................................................................................................GAAAGCCCTTAACTTGATCCATTATTTACTACATGAGAATCATTCAGACTGCAATGTAGTGACTGAGCTAGGATTTCCTCGAGTTATGATGCATCTAGCCGCTAGTGATGATGGAGAAGTGCGAGAGGGTGCCCTACAAGGTCTTCTTGACCTTGCCCAAGACAAGACAGGAGAGGTTGCTGGCTCCTCATCGACTGAAGAAAATGAGAAACTCAAGCAAATACTCCAGGAGCGAATTAAGGGGATTTCCTCTATGTCACCTGAAGATCTTGGTGCTGCTAAAGAAGAGAGGCAACTTGTAGATTCCCTCTGGAATACTTGCTACAATGAACCTTCCTCTCTTAGAGAGAAAGGCCTAGTTGTTCTCCCCGGAGAGGATGCATTACCACCTGATGTTGCTAGCAAGCATTTTGAACCTCCTCTGAGAGCTTGGGCTGCAAATAGGAACGAGGATACTAAGCCAAGTAACGAAAAGAAACAGGCTCCCTTATTGCTAGGCCTAGGTCCACCTACACAGGGTCCTCCTGTGCAGAATAGCTCTAGTGGAGCCATGTCTGGGGAAGAAAATAGAGACCCCTCTGCATGATGTACATTTTTGGGCAATACCAGGGTATTCAGCTTAATATATCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E206650" ref_strand="+" ref_description="SGN-E206650 [cLEC-31-B18]">
      <seq>tcagaacaacccgaggagccaacaactggtaatggaagctaatggcctagaaccccttctgtcaaattttacctcagatcctgatgttactgcccgcactaaagctcttggtgcaatttcatctttaattaggcacaacaagcctgccattgctgcatttcgtcttgcaaatggttatgcaggtttaagagatgctttgagttctgagagtgtgagatttcagaggaaagcccttaacttgatccattatttactacatgagaatcattcagactgcaatgtagtgactgagctaggatttcctcgagttatgatgcatctagcctctagtgatgatggagaagtgcgagagggtgccctacaaggtcttcttgaccttgcccaagacaagacaggagaggttgctggctcctcatcgactgaagaaaatgagaaactcaagcaaatactccaggagcgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="82913" stop="84216"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83213" g_stop="83334" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83335" i_stop="83454" i_length="120">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83455" g_stop="83557" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="225" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83558" i_stop="83679" i_length="122">
            <donor d_prob="0.700" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83680" g_stop="83916" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="462" r_length="237" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E206650" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206650" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83213" e_stop="83334"/>
          <exon e_start="83455" e_stop="83557"/>
          <exon e_start="83680" e_stop="83916"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGAACAACCCGAGGAGCCAACAACTGGTAATGGAAGCTAATGGCCTAGAACCCCTTCTGTCAAATTTTACCTCAGATCCTGATGTTACTGCCCGCACTAAAGCTCTTGGTGCAATTTCATGTGAGTACTTTCCCCGTTATGATTTATTAGTTAAGTGTGCCCTTTAAATTTTGGTGTCATGTCATCTGTGTTTTCCAGTAGCGTTGATCAACTAGTTTTTTTATTTTTCCTTTATTCCAGCTTTAATTAGGCACAACAAGCCTGCCATTGCTGCATTTCGTCTTGCAAATGGTTATGCAGGTTTAAGAGATGCTTTGAGTTCTGAGAGTGTGAGATTTCAGAGGTACTATTTTCTATATCATGCACTAGACGTTTCTGAATCAACCATTGATGAAGCTGCTGCTTTCCCGTAAACCTTCCTCTTTTATATTCCTTTCTAATAGGTATAGTCCTGTTCTTTTGCAGGAAAGCCCTTAACTTGATCCATTATTTACTACATGAGAATCATTCAGACTGCAATGTAGTGACTGAGCTAGGATTTCCTCGAGTTATGATGCATCTAGCCTCTAGTGATGATGGAGAAGTGCGAGAGGGTGCCCTACAAGGTCTTCTTGACCTTGCCCAAGACAAGACAGGAGAGGTTGCTGGCTCCTCATCGACTGAAGAAAATGAGAAACTCAAGCAAATACTCCAGGAGCGAAT</genome_strand>
        <mrna_strand>TCAGAACAACCCGAGGAGCCAACAACTGGTAATGGAAGCTAATGGCCTAGAACCCCTTCTGTCAAATTTTACCTCAGATCCTGATGTTACTGCCCGCACTAAAGCTCTTGGTGCAATTTCAT........................................................................................................................CTTTAATTAGGCACAACAAGCCTGCCATTGCTGCATTTCGTCTTGCAAATGGTTATGCAGGTTTAAGAGATGCTTTGAGTTCTGAGAGTGTGAGATTTCAGAG..........................................................................................................................GAAAGCCCTTAACTTGATCCATTATTTACTACATGAGAATCATTCAGACTGCAATGTAGTGACTGAGCTAGGATTTCCTCGAGTTATGATGCATCTAGCCTCTAGTGATGATGGAGAAGTGCGAGAGGGTGCCCTACAAGGTCTTCTTGACCTTGCCCAAGACAAGACAGGAGAGGTTGCTGGCTCCTCATCGACTGAAGAAAATGAGAAACTCAAGCAAATACTCCAGGAGCGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E688251" ref_strand="+" ref_description="SGN-E688251 [t3_tus_11_h16]">
      <seq>actgcccgcactaaagctcttggtgcaatttcatctttaattaggcacaacaagcctgccattgctgcatttcgtcttgcaaatggttatgcaggtttaagagatgctttgagttctgagagtgtgagatttcagaggaaagcccttaacttgatccattatttactacatgagaatcattcagactgcaatgtagtgactgagctaggatttcctcgagttatgatgcatctagcctctagtgatgatggagaagtgcgagagggtgccctacaaggtcttcttgaccttgcccaagacaagacaggagaggttgctggctcctcatcgactgaagaaaatgagaaactcaagcaaatactccaggagcgaattaaggggatttcctctatgtcacctgaagatcttggtgctgctaaagaagagaggcaacttgtagattccctctggaatacttgctacaatgaaccttcctctcttagagagaaaggcctagttgttctccccggagaggatgcattaccacctgatgttgctagcaagcattttgaacctcctctgagagcttgggctgcaaataggaacgaggatactaagccaagtaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="83001" stop="84448"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83301" g_stop="83334" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83335" i_stop="83454" i_length="120">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83455" g_stop="83557" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="137" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83558" i_stop="83679" i_length="122">
            <donor d_prob="0.700" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83680" g_stop="84148" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="606" r_length="469" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E688251" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E688251" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83301" e_stop="83334"/>
          <exon e_start="83455" e_stop="83557"/>
          <exon e_start="83680" e_stop="84148"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGCCCGCACTAAAGCTCTTGGTGCAATTTCATGTGAGTACTTTCCCCGTTATGATTTATTAGTTAAGTGTGCCCTTTAAATTTTGGTGTCATGTCATCTGTGTTTTCCAGTAGCGTTGATCAACTAGTTTTTTTATTTTTCCTTTATTCCAGCTTTAATTAGGCACAACAAGCCTGCCATTGCTGCATTTCGTCTTGCAAATGGTTATGCAGGTTTAAGAGATGCTTTGAGTTCTGAGAGTGTGAGATTTCAGAGGTACTATTTTCTATATCATGCACTAGACGTTTCTGAATCAACCATTGATGAAGCTGCTGCTTTCCCGTAAACCTTCCTCTTTTATATTCCTTTCTAATAGGTATAGTCCTGTTCTTTTGCAGGAAAGCCCTTAACTTGATCCATTATTTACTACATGAGAATCATTCAGACTGCAATGTAGTGACTGAGCTAGGATTTCCTCGAGTTATGATGCATCTAGCCTCTAGTGATGATGGAGAAGTGCGAGAGGGTGCCCTACAAGGTCTTCTTGACCTTGCCCAAGACAAGACAGGAGAGGTTGCTGGCTCCTCATCGACTGAAGAAAATGAGAAACTCAAGCAAATACTCCAGGAGCGAATTAAGGGGATTTCCTCTATGTCACCTGAAGATCTTGGTGCTGCTAAAGAAGAGAGGCAACTTGTAGATTCCCTCTGGAATACTTGCTACAATGAACCTTCCTCTCTTAGAGAGAAAGGCCTAGTTGTTCTCCCCGGAGAGGATGCATTACCACCTGATGTTGCTAGCAAGCATTTTGAACCTCCTCTGAGAGCTTGGGCTGCAAATAGGAACGAGGATACTAAGCCAAGTAAC</genome_strand>
        <mrna_strand>ACTGCCCGCACTAAAGCTCTTGGTGCAATTTCAT........................................................................................................................CTTTAATTAGGCACAACAAGCCTGCCATTGCTGCATTTCGTCTTGCAAATGGTTATGCAGGTTTAAGAGATGCTTTGAGTTCTGAGAGTGTGAGATTTCAGAG..........................................................................................................................GAAAGCCCTTAACTTGATCCATTATTTACTACATGAGAATCATTCAGACTGCAATGTAGTGACTGAGCTAGGATTTCCTCGAGTTATGATGCATCTAGCCTCTAGTGATGATGGAGAAGTGCGAGAGGGTGCCCTACAAGGTCTTCTTGACCTTGCCCAAGACAAGACAGGAGAGGTTGCTGGCTCCTCATCGACTGAAGAAAATGAGAAACTCAAGCAAATACTCCAGGAGCGAATTAAGGGGATTTCCTCTATGTCACCTGAAGATCTTGGTGCTGCTAAAGAAGAGAGGCAACTTGTAGATTCCCTCTGGAATACTTGCTACAATGAACCTTCCTCTCTTAGAGAGAAAGGCCTAGTTGTTCTCCCCGGAGAGGATGCATTACCACCTGATGTTGCTAGCAAGCATTTTGAACCTCCTCTGAGAGCTTGGGCTGCAAATAGGAACGAGGATACTAAGCCAAGTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E550614" ref_strand="+" ref_description="SGN-E550614 [TUS-11-H16]">
      <seq>actgcccgcactaaagctcttggtgcaatttcatctttaattaggcacaacaagcctgccattgctgcatttcgtcttgcaaatggttatgcaggtttaagagatgctttgagttctgagagtgtgagatttcagaggaaagcccttaacttgatccattatttactacatgagaatcattcagactgcaatgtagtgactgagctaggatttcctcgagttatgatgcatctagcctctagtgatgatggagaagtgcgagagggtgccctacaaggtcttcttgaccttgcccaagacaagacaggagaggttgctggctcctcatcgactgaagaaaatgagaaactcaagcaaatactccaggagcgaattaaggggatttcctctatgtcacctgaagatcttggtgctgctaaagaagagaggcaacttgtagattccctctggaatacttgctacaatgaaccttcctctcttagagagaaaggcctagttgttctccccggagaggatgcattaccacctgatgttgctagcaagcattttgaacctcctctgagagcttgggctgcaaataggaacgaggatactaagccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="83001" stop="84443"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83301" g_stop="83334" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83335" i_stop="83454" i_length="120">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83455" g_stop="83557" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="137" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83558" i_stop="83679" i_length="122">
            <donor d_prob="0.700" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83680" g_stop="84143" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="601" r_length="464" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E550614" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83301" e_stop="83334"/>
          <exon e_start="83455" e_stop="83557"/>
          <exon e_start="83680" e_stop="84143"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGCCCGCACTAAAGCTCTTGGTGCAATTTCATGTGAGTACTTTCCCCGTTATGATTTATTAGTTAAGTGTGCCCTTTAAATTTTGGTGTCATGTCATCTGTGTTTTCCAGTAGCGTTGATCAACTAGTTTTTTTATTTTTCCTTTATTCCAGCTTTAATTAGGCACAACAAGCCTGCCATTGCTGCATTTCGTCTTGCAAATGGTTATGCAGGTTTAAGAGATGCTTTGAGTTCTGAGAGTGTGAGATTTCAGAGGTACTATTTTCTATATCATGCACTAGACGTTTCTGAATCAACCATTGATGAAGCTGCTGCTTTCCCGTAAACCTTCCTCTTTTATATTCCTTTCTAATAGGTATAGTCCTGTTCTTTTGCAGGAAAGCCCTTAACTTGATCCATTATTTACTACATGAGAATCATTCAGACTGCAATGTAGTGACTGAGCTAGGATTTCCTCGAGTTATGATGCATCTAGCCTCTAGTGATGATGGAGAAGTGCGAGAGGGTGCCCTACAAGGTCTTCTTGACCTTGCCCAAGACAAGACAGGAGAGGTTGCTGGCTCCTCATCGACTGAAGAAAATGAGAAACTCAAGCAAATACTCCAGGAGCGAATTAAGGGGATTTCCTCTATGTCACCTGAAGATCTTGGTGCTGCTAAAGAAGAGAGGCAACTTGTAGATTCCCTCTGGAATACTTGCTACAATGAACCTTCCTCTCTTAGAGAGAAAGGCCTAGTTGTTCTCCCCGGAGAGGATGCATTACCACCTGATGTTGCTAGCAAGCATTTTGAACCTCCTCTGAGAGCTTGGGCTGCAAATAGGAACGAGGATACTAAGCCAA</genome_strand>
        <mrna_strand>ACTGCCCGCACTAAAGCTCTTGGTGCAATTTCAT........................................................................................................................CTTTAATTAGGCACAACAAGCCTGCCATTGCTGCATTTCGTCTTGCAAATGGTTATGCAGGTTTAAGAGATGCTTTGAGTTCTGAGAGTGTGAGATTTCAGAG..........................................................................................................................GAAAGCCCTTAACTTGATCCATTATTTACTACATGAGAATCATTCAGACTGCAATGTAGTGACTGAGCTAGGATTTCCTCGAGTTATGATGCATCTAGCCTCTAGTGATGATGGAGAAGTGCGAGAGGGTGCCCTACAAGGTCTTCTTGACCTTGCCCAAGACAAGACAGGAGAGGTTGCTGGCTCCTCATCGACTGAAGAAAATGAGAAACTCAAGCAAATACTCCAGGAGCGAATTAAGGGGATTTCCTCTATGTCACCTGAAGATCTTGGTGCTGCTAAAGAAGAGAGGCAACTTGTAGATTCCCTCTGGAATACTTGCTACAATGAACCTTCCTCTCTTAGAGAGAAAGGCCTAGTTGTTCTCCCCGGAGAGGATGCATTACCACCTGATGTTGCTAGCAAGCATTTTGAACCTCCTCTGAGAGCTTGGGCTGCAAATAGGAACGAGGATACTAAGCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E273345" ref_strand="+" ref_description="SGN-E273345 [cLEN-3-F19]">
      <seq>ctgcccgcactaaagctcttggtgcaatttcatctttaattaggcacaacaagcctgccattgctgcatttcgtcttgcaaatggttatgcaggtttaagagatgctttgagttctgagagtgtgagatttcagaggaaagcccttaacttgatccattatttactacatgagaatcattcagactgcaatgtagtgactgagctaggatttcctcgagttatgatgcatctagcctctagtgatgatggagaagtgcgagagggtgccctacaaggtcttcttgaccttgcccaagacaagacaggagaggttgctggctcctcatcgactgaagaaaatgagaaactcaagcaaatactccaggagcgaattaaggggatttcctctatgtcacctgaagatcttggtgctgctaaagaagagaggcaacttgtagattccctctggaatacttgctacaatgaaccttcctctcttagagagaaaggcctagttgttctccccggagaggatgcattaccacctgatgttgctagcaagcattttgaacctcctctgagagcttgggctgcaaataggaacgaggatactaagccaagtaacgaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="83002" stop="84454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83302" g_stop="83334" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83335" i_stop="83454" i_length="120">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83455" g_stop="83557" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="136" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83558" i_stop="83679" i_length="122">
            <donor d_prob="0.700" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83680" g_stop="84154" g_length="475"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="611" r_length="475" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E273345" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273345" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83302" e_stop="83334"/>
          <exon e_start="83455" e_stop="83557"/>
          <exon e_start="83680" e_stop="84154"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCCCGCACTAAAGCTCTTGGTGCAATTTCATGTGAGTACTTTCCCCGTTATGATTTATTAGTTAAGTGTGCCCTTTAAATTTTGGTGTCATGTCATCTGTGTTTTCCAGTAGCGTTGATCAACTAGTTTTTTTATTTTTCCTTTATTCCAGCTTTAATTAGGCACAACAAGCCTGCCATTGCTGCATTTCGTCTTGCAAATGGTTATGCAGGTTTAAGAGATGCTTTGAGTTCTGAGAGTGTGAGATTTCAGAGGTACTATTTTCTATATCATGCACTAGACGTTTCTGAATCAACCATTGATGAAGCTGCTGCTTTCCCGTAAACCTTCCTCTTTTATATTCCTTTCTAATAGGTATAGTCCTGTTCTTTTGCAGGAAAGCCCTTAACTTGATCCATTATTTACTACATGAGAATCATTCAGACTGCAATGTAGTGACTGAGCTAGGATTTCCTCGAGTTATGATGCATCTAGCCTCTAGTGATGATGGAGAAGTGCGAGAGGGTGCCCTACAAGGTCTTCTTGACCTTGCCCAAGACAAGACAGGAGAGGTTGCTGGCTCCTCATCGACTGAAGAAAATGAGAAACTCAAGCAAATACTCCAGGAGCGAATTAAGGGGATTTCCTCTATGTCACCTGAAGATCTTGGTGCTGCTAAAGAAGAGAGGCAACTTGTAGATTCCCTCTGGAATACTTGCTACAATGAACCTTCCTCTCTTAGAGAGAAAGGCCTAGTTGTTCTCCCCGGAGAGGATGCATTACCACCTGATGTTGCTAGCAAGCATTTTGAACCTCCTCTGAGAGCTTGGGCTGCAAATAGGAACGAGGATACTAAGCCAAGTAACGAAAAG</genome_strand>
        <mrna_strand>CTGCCCGCACTAAAGCTCTTGGTGCAATTTCAT........................................................................................................................CTTTAATTAGGCACAACAAGCCTGCCATTGCTGCATTTCGTCTTGCAAATGGTTATGCAGGTTTAAGAGATGCTTTGAGTTCTGAGAGTGTGAGATTTCAGAG..........................................................................................................................GAAAGCCCTTAACTTGATCCATTATTTACTACATGAGAATCATTCAGACTGCAATGTAGTGACTGAGCTAGGATTTCCTCGAGTTATGATGCATCTAGCCTCTAGTGATGATGGAGAAGTGCGAGAGGGTGCCCTACAAGGTCTTCTTGACCTTGCCCAAGACAAGACAGGAGAGGTTGCTGGCTCCTCATCGACTGAAGAAAATGAGAAACTCAAGCAAATACTCCAGGAGCGAATTAAGGGGATTTCCTCTATGTCACCTGAAGATCTTGGTGCTGCTAAAGAAGAGAGGCAACTTGTAGATTCCCTCTGGAATACTTGCTACAATGAACCTTCCTCTCTTAGAGAGAAAGGCCTAGTTGTTCTCCCCGGAGAGGATGCATTACCACCTGATGTTGCTAGCAAGCATTTTGAACCTCCTCTGAGAGCTTGGGCTGCAAATAGGAACGAGGATACTAAGCCAAGTAACGAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E273425" ref_strand="+" ref_description="SGN-E273425 [cLEN-3-K24]">
      <seq>ctgcccgcactaaagctcttggtgcaatttcatctttaattaggcacaacaagcctgccattgctgcatttcgtcttgcaaatggttatgcaggtttaagagatgctatgagttctgagagtgtgagatttcataggaaagcccttaacttgatccattatttactacatgagaatcattcagactgcaatgtagtgactgagctaggatttcctcgagttatgatgcatctagcctctagtgatgatggagaagtgcgagagggtgccctacaaggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="83002" stop="84121"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83302" g_stop="83334" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83335" i_stop="83454" i_length="120">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83455" g_stop="83557" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="136" r_length="103" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83558" i_stop="83679" i_length="122">
            <donor d_prob="0.700" d_score="0.96"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83680" g_stop="83821" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="278" r_length="142" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E273425" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>278</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273425" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83302" e_stop="83334"/>
          <exon e_start="83455" e_stop="83557"/>
          <exon e_start="83680" e_stop="83821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCCCGCACTAAAGCTCTTGGTGCAATTTCATGTGAGTACTTTCCCCGTTATGATTTATTAGTTAAGTGTGCCCTTTAAATTTTGGTGTCATGTCATCTGTGTTTTCCAGTAGCGTTGATCAACTAGTTTTTTTATTTTTCCTTTATTCCAGCTTTAATTAGGCACAACAAGCCTGCCATTGCTGCATTTCGTCTTGCAAATGGTTATGCAGGTTTAAGAGATGCTTTGAGTTCTGAGAGTGTGAGATTTCAGAGGTACTATTTTCTATATCATGCACTAGACGTTTCTGAATCAACCATTGATGAAGCTGCTGCTTTCCCGTAAACCTTCCTCTTTTATATTCCTTTCTAATAGGTATAGTCCTGTTCTTTTGCAGGAAAGCCCTTAACTTGATCCATTATTTACTACATGAGAATCATTCAGACTGCAATGTAGTGACTGAGCTAGGATTTCCTCGAGTTATGATGCATCTAGCCTCTAGTGATGATGGAGAAGTGCGAGAGGGTGCCCTACAAGGT</genome_strand>
        <mrna_strand>CTGCCCGCACTAAAGCTCTTGGTGCAATTTCAT........................................................................................................................CTTTAATTAGGCACAACAAGCCTGCCATTGCTGCATTTCGTCTTGCAAATGGTTATGCAGGTTTAAGAGATGCTATGAGTTCTGAGAGTGTGAGATTTCATAG..........................................................................................................................GAAAGCCCTTAACTTGATCCATTATTTACTACATGAGAATCATTCAGACTGCAATGTAGTGACTGAGCTAGGATTTCCTCGAGTTATGATGCATCTAGCCTCTAGTGATGATGGAGAAGTGCGAGAGGGTGCCCTACAAGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E391662" ref_strand="+" ref_description="SGN-E391662 [TUS-24-O13](-)">
      <seq>atgcatttagcctttagtgatgatggagaagtgcgagagggtgccctacaaggtcttcttgaccttgcccaagacaagacaggagaggttgctggctcctcatcgactgaagaaaatgagaaactcaagcaaatactccaggagcgaattaaggggatttcctctatgtcacctgaagatcttggtgctgctaaagaagagaggcaacttgtagattccctttggaatacttgctacaatgaaccttcctctcttagagagaaaggcctagttgttctccccggagaggatgcattaccacctgatgttgctagcaagcattttgaacctcctttgagagcttgggctgcaaataggaacgaggatactaagccaagtaacgaaaagaaacaggctcccttattgctaggcctaggtccacctacacagggtcctcctgtgcagaatagctctagtggagccatgtctggggaagaaaatagagacacctttgcatgatgtacatttttgggcaataccaggttattcagcttaatatatctttgtgatattacaaataacactgtgttaaatgccaagtgttttttggataattttgagtctttcctctctgtcatgtcacacttccaattttttttcatttcctttgttgtttaaccaaattctcaagtgtaatgctgtatttgttttggttatagtatacgtacaacattgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="83468" stop="84782"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83768" g_stop="84491" g_length="724"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="724" r_length="724" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E391662" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391662" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83768" e_stop="84491"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCATCTAGCCTCTAGTGATGATGGAGAAGTGCGAGAGGGTGCCCTACAAGGTCTTCTTGACCTTGCCCAAGACAAGACAGGAGAGGTTGCTGGCTCCTCATCGACTGAAGAAAATGAGAAACTCAAGCAAATACTCCAGGAGCGAATTAAGGGGATTTCCTCTATGTCACCTGAAGATCTTGGTGCTGCTAAAGAAGAGAGGCAACTTGTAGATTCCCTCTGGAATACTTGCTACAATGAACCTTCCTCTCTTAGAGAGAAAGGCCTAGTTGTTCTCCCCGGAGAGGATGCATTACCACCTGATGTTGCTAGCAAGCATTTTGAACCTCCTCTGAGAGCTTGGGCTGCAAATAGGAACGAGGATACTAAGCCAAGTAACGAAAAGAAACAGGCTCCCTTATTGCTAGGCCTAGGTCCACCTACACAGGGTCCTCCTGTGCAGAATAGCTCTAGTGGAGCCATGTCTGGGGAAGAAAATAGAGACACCTCTGCATGATGTACATTTTTGGGCAATACCAGGTTATTCAGCTTAATATATCTTTGTGATATTACAAATAACACTGTGTTAAATGCCAAGTGTTTTCTGGATAATTTTGAGTCTTTCCTCTCTGTCATGTCACACTTCCAATTTTTCTTCATTTCCTTTGTTGTTTAACCAAATTCTCAAGTGTAATGCTGTATTTGTTTTGGTTATAGTATACGTACAACATTGACTGTTGAAT</genome_strand>
        <mrna_strand>ATGCATTTAGCCTTTAGTGATGATGGAGAAGTGCGAGAGGGTGCCCTACAAGGTCTTCTTGACCTTGCCCAAGACAAGACAGGAGAGGTTGCTGGCTCCTCATCGACTGAAGAAAATGAGAAACTCAAGCAAATACTCCAGGAGCGAATTAAGGGGATTTCCTCTATGTCACCTGAAGATCTTGGTGCTGCTAAAGAAGAGAGGCAACTTGTAGATTCCCTTTGGAATACTTGCTACAATGAACCTTCCTCTCTTAGAGAGAAAGGCCTAGTTGTTCTCCCCGGAGAGGATGCATTACCACCTGATGTTGCTAGCAAGCATTTTGAACCTCCTTTGAGAGCTTGGGCTGCAAATAGGAACGAGGATACTAAGCCAAGTAACGAAAAGAAACAGGCTCCCTTATTGCTAGGCCTAGGTCCACCTACACAGGGTCCTCCTGTGCAGAATAGCTCTAGTGGAGCCATGTCTGGGGAAGAAAATAGAGACACCTTTGCATGATGTACATTTTTGGGCAATACCAGGTTATTCAGCTTAATATATCTTTGTGATATTACAAATAACACTGTGTTAAATGCCAAGTGTTTTTTGGATAATTTTGAGTCTTTCCTCTCTGTCATGTCACACTTCCAATTTTTTTTCATTTCCTTTGTTGTTTAACCAAATTCTCAAGTGTAATGCTGTATTTGTTTTGGTTATAGTATACGTACAACATTGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E717297" ref_strand="+" ref_description="SGN-E717297 [FB19DB09]">
      <seq>ctacaaggtcttcttgaccttgcccaagacaagacaggagaggttgctggctcctcatcgactgaagaaaatgagaaactcaagcaaatactccaggagcgaattaaggggatttcctctatgtcacctgaagatcttggtgctgctaaagaagagaggcaacttgtagattccctctggaatacttgctacaatgaaccttcctctcttagagagaaaggcctagttgttctccccggagaggatgcattaccacctgatgttgctagcaagcattttgaacctcctctgagagcttgggctgcaaataggaacgaggatactaagccaagtaacgaaaagaaacaggctcccttattgctaggcctaggtccacctacacagggtcctcctgtgcagaatagctctagtggagccatgtctggggaagaaaatagagacacctctgcatgatgtacatttttgggcaataccaggttattcagcttaatatatctttgtgatattacaaataacactgtgttaaatgccaagtgttttctggataattttgagtctttcctctctgtcatgtcacacttccaatttttcttcatttcctttgttgtttaaccaaattctcaagtgtaatgctgtatttgttttggttatagtatacgtacaacattgactgttgaatctgtttttattttggtgaattttatcacaatatgaaaatctgaactattactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="83513" stop="84846"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83813" g_stop="84546" g_length="734"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="734" r_length="734" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E717297" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E717297" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83813" e_stop="84546"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACAAGGTCTTCTTGACCTTGCCCAAGACAAGACAGGAGAGGTTGCTGGCTCCTCATCGACTGAAGAAAATGAGAAACTCAAGCAAATACTCCAGGAGCGAATTAAGGGGATTTCCTCTATGTCACCTGAAGATCTTGGTGCTGCTAAAGAAGAGAGGCAACTTGTAGATTCCCTCTGGAATACTTGCTACAATGAACCTTCCTCTCTTAGAGAGAAAGGCCTAGTTGTTCTCCCCGGAGAGGATGCATTACCACCTGATGTTGCTAGCAAGCATTTTGAACCTCCTCTGAGAGCTTGGGCTGCAAATAGGAACGAGGATACTAAGCCAAGTAACGAAAAGAAACAGGCTCCCTTATTGCTAGGCCTAGGTCCACCTACACAGGGTCCTCCTGTGCAGAATAGCTCTAGTGGAGCCATGTCTGGGGAAGAAAATAGAGACACCTCTGCATGATGTACATTTTTGGGCAATACCAGGTTATTCAGCTTAATATATCTTTGTGATATTACAAATAACACTGTGTTAAATGCCAAGTGTTTTCTGGATAATTTTGAGTCTTTCCTCTCTGTCATGTCACACTTCCAATTTTTCTTCATTTCCTTTGTTGTTTAACCAAATTCTCAAGTGTAATGCTGTATTTGTTTTGGTTATAGTATACGTACAACATTGACTGTTGAATCTGTTTTTATTTTGGTGAATTTTATCACAATATGAAAATCTGAACTATTACTAGT</genome_strand>
        <mrna_strand>CTACAAGGTCTTCTTGACCTTGCCCAAGACAAGACAGGAGAGGTTGCTGGCTCCTCATCGACTGAAGAAAATGAGAAACTCAAGCAAATACTCCAGGAGCGAATTAAGGGGATTTCCTCTATGTCACCTGAAGATCTTGGTGCTGCTAAAGAAGAGAGGCAACTTGTAGATTCCCTCTGGAATACTTGCTACAATGAACCTTCCTCTCTTAGAGAGAAAGGCCTAGTTGTTCTCCCCGGAGAGGATGCATTACCACCTGATGTTGCTAGCAAGCATTTTGAACCTCCTCTGAGAGCTTGGGCTGCAAATAGGAACGAGGATACTAAGCCAAGTAACGAAAAGAAACAGGCTCCCTTATTGCTAGGCCTAGGTCCACCTACACAGGGTCCTCCTGTGCAGAATAGCTCTAGTGGAGCCATGTCTGGGGAAGAAAATAGAGACACCTCTGCATGATGTACATTTTTGGGCAATACCAGGTTATTCAGCTTAATATATCTTTGTGATATTACAAATAACACTGTGTTAAATGCCAAGTGTTTTCTGGATAATTTTGAGTCTTTCCTCTCTGTCATGTCACACTTCCAATTTTTCTTCATTTCCTTTGTTGTTTAACCAAATTCTCAAGTGTAATGCTGTATTTGTTTTGGTTATAGTATACGTACAACATTGACTGTTGAATCTGTTTTTATTTTGGTGAATTTTATCACAATATGAAAATCTGAACTATTACTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392031" ref_strand="+" ref_description="SGN-E392031 [TUS-24-O14](-)">
      <seq>gcccaagacaagacaggagaggttgctggctcctcattgactgaagaaaatgagaaactcaagcaaatactccaggagcgaattaaggggatttcctctatgtcacctgaagatcttggtgctgctaaagaagagaggcaacttgtagattccctttggaatacttgctacaatgaaccttcctctcttagagagaaaggcctagttgttctccccggagaggatgcattaccacctgatgttgctagcaagcattttgaacctcctttgagagcttgggctgcaaataggaacgaggatactaagccaagtaacgaaaagaaacaggctcccttattgctaggcctaggtccacctacacagggtcctcctgtgcagaatagctttagtggagccatgtctggggaagaaaatagagacacctttgcatgatgtacatttttgggcaataccaggttattcagcttaatatatctttgtgatattacaaataacactgtgttaaatgccaagtgttttttggataattttgagtctttcctctctgtcatgtcacacttccaatttttcttcatttcctttgttgtttaaccaaattctcaagtgtaatgctgtatttgttttggttatagtatacgtacaacattgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="83534" stop="84782"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83834" g_stop="84491" g_length="658"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E392031" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392031" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83834" e_stop="84491"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCCAAGACAAGACAGGAGAGGTTGCTGGCTCCTCATCGACTGAAGAAAATGAGAAACTCAAGCAAATACTCCAGGAGCGAATTAAGGGGATTTCCTCTATGTCACCTGAAGATCTTGGTGCTGCTAAAGAAGAGAGGCAACTTGTAGATTCCCTCTGGAATACTTGCTACAATGAACCTTCCTCTCTTAGAGAGAAAGGCCTAGTTGTTCTCCCCGGAGAGGATGCATTACCACCTGATGTTGCTAGCAAGCATTTTGAACCTCCTCTGAGAGCTTGGGCTGCAAATAGGAACGAGGATACTAAGCCAAGTAACGAAAAGAAACAGGCTCCCTTATTGCTAGGCCTAGGTCCACCTACACAGGGTCCTCCTGTGCAGAATAGCTCTAGTGGAGCCATGTCTGGGGAAGAAAATAGAGACACCTCTGCATGATGTACATTTTTGGGCAATACCAGGTTATTCAGCTTAATATATCTTTGTGATATTACAAATAACACTGTGTTAAATGCCAAGTGTTTTCTGGATAATTTTGAGTCTTTCCTCTCTGTCATGTCACACTTCCAATTTTTCTTCATTTCCTTTGTTGTTTAACCAAATTCTCAAGTGTAATGCTGTATTTGTTTTGGTTATAGTATACGTACAACATTGACTGTTGAAT</genome_strand>
        <mrna_strand>GCCCAAGACAAGACAGGAGAGGTTGCTGGCTCCTCATTGACTGAAGAAAATGAGAAACTCAAGCAAATACTCCAGGAGCGAATTAAGGGGATTTCCTCTATGTCACCTGAAGATCTTGGTGCTGCTAAAGAAGAGAGGCAACTTGTAGATTCCCTTTGGAATACTTGCTACAATGAACCTTCCTCTCTTAGAGAGAAAGGCCTAGTTGTTCTCCCCGGAGAGGATGCATTACCACCTGATGTTGCTAGCAAGCATTTTGAACCTCCTTTGAGAGCTTGGGCTGCAAATAGGAACGAGGATACTAAGCCAAGTAACGAAAAGAAACAGGCTCCCTTATTGCTAGGCCTAGGTCCACCTACACAGGGTCCTCCTGTGCAGAATAGCTTTAGTGGAGCCATGTCTGGGGAAGAAAATAGAGACACCTTTGCATGATGTACATTTTTGGGCAATACCAGGTTATTCAGCTTAATATATCTTTGTGATATTACAAATAACACTGTGTTAAATGCCAAGTGTTTTTTGGATAATTTTGAGTCTTTCCTCTCTGTCATGTCACACTTCCAATTTTTCTTCATTTCCTTTGTTGTTTAACCAAATTCTCAAGTGTAATGCTGTATTTGTTTTGGTTATAGTATACGTACAACATTGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272174" ref_strand="+" ref_description="SGN-E272174 [cLEN-4-O5]">
      <seq>aaatgagaaactcaagcaaatactccaggagcgaattaaggggatttcctctatgtcacctgaagatcttggtgctgctaaagaagagaggcaacttgtagattccctctggaatacttgctacaatgaaccttcctctcttagagagaaaggcctagttgttctccccggagaggatgcattaccacctgatgttgctagcaagcattttgaacctcctctgagagcttgggctgcaaataggaacgaggatactaagccaagtaacgaaaagaaacaggctcccttattgctaggcctaggtccacctacacagggtcctcctgtgcagaatagctctagtggagccatgtctggggaagaaaatagagacacctctgcatgatgtacatttttgggcaataccaggttattcagcttaatatatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="83581" stop="84609"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83881" g_stop="84309" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="429" r_length="429" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E272174" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272174" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83881" e_stop="84309"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGAGAAACTCAAGCAAATACTCCAGGAGCGAATTAAGGGGATTTCCTCTATGTCACCTGAAGATCTTGGTGCTGCTAAAGAAGAGAGGCAACTTGTAGATTCCCTCTGGAATACTTGCTACAATGAACCTTCCTCTCTTAGAGAGAAAGGCCTAGTTGTTCTCCCCGGAGAGGATGCATTACCACCTGATGTTGCTAGCAAGCATTTTGAACCTCCTCTGAGAGCTTGGGCTGCAAATAGGAACGAGGATACTAAGCCAAGTAACGAAAAGAAACAGGCTCCCTTATTGCTAGGCCTAGGTCCACCTACACAGGGTCCTCCTGTGCAGAATAGCTCTAGTGGAGCCATGTCTGGGGAAGAAAATAGAGACACCTCTGCATGATGTACATTTTTGGGCAATACCAGGTTATTCAGCTTAATATATCT</genome_strand>
        <mrna_strand>AAATGAGAAACTCAAGCAAATACTCCAGGAGCGAATTAAGGGGATTTCCTCTATGTCACCTGAAGATCTTGGTGCTGCTAAAGAAGAGAGGCAACTTGTAGATTCCCTCTGGAATACTTGCTACAATGAACCTTCCTCTCTTAGAGAGAAAGGCCTAGTTGTTCTCCCCGGAGAGGATGCATTACCACCTGATGTTGCTAGCAAGCATTTTGAACCTCCTCTGAGAGCTTGGGCTGCAAATAGGAACGAGGATACTAAGCCAAGTAACGAAAAGAAACAGGCTCCCTTATTGCTAGGCCTAGGTCCACCTACACAGGGTCCTCCTGTGCAGAATAGCTCTAGTGGAGCCATGTCTGGGGAAGAAAATAGAGACACCTCTGCATGATGTACATTTTTGGGCAATACCAGGTTATTCAGCTTAATATATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E567067" ref_strand="+" ref_description="SGN-E567067 [11135]">
      <seq>ttttttttttttttttttttgtttttattttttttttttttttttttaacacagaatgttatttgtaatatcacaaagatatattaagccgaagaacctggtattgcctaaacatgtacatcatgcagaggtgtctctattttcttccccagacatggctccactgaagctattctgtgcaggaggatcctgtgtaggtggacctaggcctagcaataagggagcctgtttcttttcattacttggcttagtatcctcattcctattcgcagcccaagctctcagaggaggttcaaaatgcttactagcaacatcaggtggtaatgcatcctctccagggagaacaactaggcctttctctctaagagaagaaggctcattgtagcaggtattccagagggaatctacaagctgcctctcttctttagcagcaccaagatcttcaggtgacatagagcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="-" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="104014" stop="83629"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87255" g_stop="87207" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="0.653"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87206" i_stop="84337" i_length="2870">
            <donor d_prob="0.000" d_score="0.65"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84336" g_stop="83927" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="459" r_length="410" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="-" ref_id="SGN-E567067" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E567067" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87255" e_stop="87207"/>
          <exon e_start="84336" e_stop="83927"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTATTTATTATTTTAAAAGTTTAAAATACTTTTTTATTTTATATTAAATATGAGTAATTATTTTTGAAGATTAAAAGAATGAATGGAACACTTGATTTTAATTGAACCAAATATTATCTTTTCATATTCTGTGTAAAAAAATTATCGATTTAAATTTCTTTTGAAATCTCAATATGAAAGACGACGACCTCTACAACTTCTAATATCATTTCTTTCAAAATCATATCCATATATAATAAGTTGAACTTCAATCTTTCCGTTCATCGAATTGAAAGGTTTAAATCTTTTAATCCACTATTCGAGAGTTAATAGATGTGATCTGGATAATTTGACTGAATATTAATTTAATAGAAAATTATATCTTCAAGCATACTAAAATTACCCAAATGAAGAGAAACACAATATATAATTTGAAACAGATAAGTCATTAGAAAAATTAAATTCTTGATAAGTGAATTAGAACATCAATTTTCGTGTGTATTGGTACCTTAAATTTATGATTACATGATTCTTTTAATACCATGAAATTCAAAGTTAGAGAATAAAAATATTCTTTTTATTGTAATCCAACCTACATATTAATTTTTCGTTTTCTCTCCTTTCTCATTATGCAATGAAAATATACATTGTATTGCAAACAAATATTATAGTAAAACGGACAGTAAAATTGTGAAATTAAAATATTTCTAGATTAATCAAAAAGTTGATCGACACAATTGATTAAGTTTGAAAATTATGTACATATACATTTGAAAAGTTAAACATATACGTTTGCTACTATATATATCCACTATTAGGTGTTAATTAGATATTAGGGACCATTCTAATCCTTACTGTTAAGTTAAAACGATAGCTTAAAGCTTAATGCAGCTCAAGTCCTTTTCATTTTTAAAGCTTAATCACAATACTTATTAGTGTAAGACAGTTTTCTTTTAACAAAAATAACTTATTCAGATCTGATCAGATAAAAATACTAGGATCGTGTGATAGCTAGTTTTGAGATAAGTTAGACATATATTATAATTAGAATATGTGAGTATGTGTTTAGGAGGTAAAAATTAATAGATTACAATTTGGAAACTCATGTAATTAATACGTGTATAAATTATGAGAAAATTTATGTACTATTATTTTATGCACAATAAAAAGAGAGCAACTTTATTACAATATTTTTGGTCATCTCACATGTTTTTAAATAACTCGTATCACGAATAAATTATCTGATCAATAACCACCGCCTAAATCTCGCGCAATATTTTTCACTTTTGATTCCGTAATTGTGTCGATTTCTCCAGAAATATACTATTGTTGAAGAACCCGACACATTGACATCGAGTCTAGACGACATCGACCATGACAATTCTAGCTTCTCTGATGAGTGAGTCAACTATTTTTGGAGAATCAAACACGCGCACATTAATATTTTTTAATAGTTCGAGCAACATAGACCATGACAATTCTAGCTTTGTGATGAGTGAGTAGAGTTGAAGCATCTACACAAGCTAAGTATATCTCCAAATCACATTAATCTATAGTGTGGTACAAGTCCTACACTTGAAGCAATGCATATATGCCCCGTGTTCCCAAAAGAAAGGTAAAAAAGATACCATTGTTGGTTATAATAAACTAAAAGCACACAGTTAAACAGAATATTTAGTTTGTACTTATAAACTTGAGCTAGCTCTTCCACTCCCCACTGACTCAGTTTACCTGAGCTTCAGCTTCTCAAAGTGTCAAAATGCAGATTTTAACTCATCTACTATGTATTGCACTCTGTCTATACCTCTTTCTTGTCAGCACAAGTAATTCCCTGACTCTTAATCTATGTCCTAGCTTGTTTGAATGCACAATATCTTCTTGACTTGTTTTACTCTTTTTCATGTGACTGCAGATGGGACACAACTTATCCTAGTGAACAACTGCAGAAGAAGCATATGGCCTGGAATTCTTGGGAATACAGGGAAGATGACTCCTAAAGATGGTGGCTTTCATATGAGAAGTGGTGACGAAGTAGTCTTCGATGTGCCTGAGAAGTGGTCAGGTAGGCTATGGGCCAGGCAGAATTGTCACTTTAATAAGACTGGTCAAGGCTCATGTGATACTGGAGACTGTAATGGTCAGTTAAAATGCAGGGGGTTAGGAGGTAAGCCACCAGCTACTGTTGTGGAAATGACACTAGGCTCATCAACTTCGCCCCTGCATTTCTACGATGTGAGCTTGGTCGATGGCTTCAACGTGCCAGTTTCAATGAGACCTGTAGGTGGAGGAACAGGTTGTGGCGTGGCGGAGTGTGATGTTGATCTGAATATATGTTGCCCATCTGCACTAGAAGTGAAGGTTGATGGAGAAGTGGTAGGGTGTAAGAGTGCTTGCTTGGCTATACAATCAGCCAAGTACTGCTGCACAGGAAAGTTTGCAGATCCCAAAACTTGCAAACCTACTATTTTTGCTCATCTATTTAAAGCCATCTGTCCCAAGGCTTACAGTTATGCATTTGATGAGTCTTCTAGCCTAAACAGGTGTAGGGCTACAAGGTATGTCATTATCTTTTGCCCTCCAAAATAAAGAGTTCTGGGAATCTGTAATACAAGTTTCATGTACCTTAGGATTGGATGGAAACACATGTCCATCTAGAGGCAGTTTGTTGTCCTCAACTTATGTAACTCAAGTCATAGCAGAAAATTAATGGAAGTCAATGAACAGCAATACTAGTAATAGTTCAGATTTTCATATTGTGATAAAATTCACCAAAATAAAAACAGATTCAACAGTCAATGTTGTACGTATACTATAACCAAAACAAATACAGCATTACACTTGAGAATTTGGTTAAACAACAAAGGAAATGAAGAAAAATTGGAAGTGTGACATGACAGAGAGGAAAGACTCAAAATTATCCAGAAAACACTTGGCATTTAACACAGTGTTATTTGTAATATCACAAAGATATATTAAGCTGAATAACCTGGTATTGCCCAAAAATGTACATCATGCAGAGGTGTCTCTATTTTCTTCCCCAGACATGGCTCCACTAGAGCTATTCTGCACAGGAGGACCCTGTGTAGGTGGACCTAGGCCTAGCAATAAGGGAGCCTGTTTCTTTTCGTTACTTGGCTTAGTATCCTCGTTCCTATTTGCAGCCCAAGCTCTCAGAGGAGGTTCAAAATGCTTGCTAGCAACATCAGGTGGTAATGCATCCTCTCCGGGGAGAACAACTAGGCCTTTCTCTCTAAGAGAGGAAGGTTCATTGTAGCAAGTATTCCAGAGGGAATCTACAAGTTGCCTCTCTTCTTTAGCAGCACCAAGATCTTCAGGTGACATAGAGGA</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTTGTTTTTATTTTTTTTTTTTTTTTTTTTAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAGAATGTTATTTGTAATATCACAAAGATATATTAAGCCGAAGAACCTGGTATTGCCTAAACATGTACATCATGCAGAGGTGTCTCTATTTTCTTCCCCAGACATGGCTCCACTGAAGCTATTCTGTGCAGGAGGATCCTGTGTAGGTGGACCTAGGCCTAGCAATAAGGGAGCCTGTTTCTTTTCATTACTTGGCTTAGTATCCTCATTCCTATTCGCAGCCCAAGCTCTCAGAGGAGGTTCAAAATGCTTACTAGCAACATCAGGTGGTAATGCATCCTCTCCAGGGAGAACAACTAGGCCTTTCTCTCTAAGAGAAGAAGGCTCATTGTAGCAGGTATTCCAGAGGGAATCTACAAGCTGCCTCTCTTCTTTAGCAGCACCAAGATCTTCAGGTGACATAGAGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E419525" ref_strand="+" ref_description="SGN-E419525 [STM-29-D8]">
      <seq>ctgaaatcgaaccccaaatctgataaaccttttgaatttagggttttgcagaagcatttactatgtttcgaatcggagctaagctctttagagctgccagaattggtggctccgccgtgtccgatttcaggtcaccaccaacaagatttttctccattgacaacaatgttaatactggtttcaagaccaacccagttgctcttcaaatgatcaattatgctctttctcttgcccgagctcaaaaatcagatgaatcatatgcgcaagctcaattggtacttgagcagtgccactcaactcagtcggatgagagtgctaaaggattggttttgctcgctatgtctaccttattttctgaaagagggaattttagtgaagccattgagaagctccagaaaattcaagatttgggattgtcatctttagctgttagagttgctgcctctgaagcacttgctgggctttatttagaatcatatcaagatgatttttcatcagcaactgcagatatgtgcttgcaactgctggaaaccataaggctagagattggtggtggtggatctgacattttggaagctcgtgcaaaagcattgaaagggctggttgagttggtccatggtaatgttgaatcagcccagtcattctttgaaggagctcaaggtgataaaaggtgctttggcaacgttgcacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="87024" stop="91198"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87324" g_stop="87572" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="249" r_length="249" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87573" i_stop="90096" i_length="2524">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.966" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90097" g_stop="90208" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="361" r_length="112" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90209" i_stop="90310" i_length="102">
            <donor d_prob="0.943" d_score="0.98"/>
            <acceptor a_prob="0.913" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90311" g_stop="90384" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="435" r_length="74" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90385" i_stop="90458" i_length="74">
            <donor d_prob="0.849" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90459" g_stop="90505" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="482" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90506" i_stop="90604" i_length="99">
            <donor d_prob="0.961" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90605" g_stop="90755" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="633" r_length="151" r_score="0.980"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="90756" i_stop="90839" i_length="84">
            <donor d_prob="0.960" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.91"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="90840" g_stop="90884" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="634" r_stop="678" r_length="45" r_score="0.911"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="90885" i_stop="90953" i_length="69">
            <donor d_prob="0.819" d_score="0.91"/>
            <acceptor a_prob="0.158" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="90954" g_stop="90967" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="679" r_stop="692" r_length="14" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E419525" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E419525" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87324" e_stop="87572"/>
          <exon e_start="90097" e_stop="90208"/>
          <exon e_start="90311" e_stop="90384"/>
          <exon e_start="90459" e_stop="90505"/>
          <exon e_start="90605" e_stop="90755"/>
          <exon e_start="90840" e_stop="90884"/>
          <exon e_start="90954" e_stop="90967"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAAATCGAACCCTAAATCTGATAAACCCTTTGAATTTAGGGTTTTGCAGAATCATTTACTATGTTTCGAATCGGAGCTAAGCTCTATAGAGCTGCGAGAATCGGTGGCTCCGCCGTGTCCGATTTCAGGTCACCATCAACAAGATTTTTCTCCATTAACAACAATGTTAATACTGGTTTCAAGACCAACCCAGTTGCTCTTCAAATGATCAATTATGCTCTTTCTCTAGCCCGGGCTCAAAAATCAGGTATTTTTTTTCACTATACCAATCTAATGAATTGGTATCTTCAGTTTGTTTTTGTGTTGTAAACTCGAATTTGCTTTGATTTCCCCATCTGGGTCATAGGTATTTTCTCTTTTCTCGACTCGTGAAGTTCATTTCTTGAGTTTAGTTGTGTTTTTGATGGATACAAATGTTTGAGGAAGATGATTTGGTTTAAGAAAATGTCAATAATGCTCTCTTTAGGTAGTAGTTAGGACAGGGACCTGCTAGGATAAACAAAGAATTGCTATTTCTCTTTTCTTATATGTTTTGGAAATTCACTCTACTGCAATTATTCATTAGCACATTTTGTGAGTTAACTGTTGGTCTTAGTATAGTTACTAGTGTTTGGAGAAAGAATTGAATTCACTCTCATATTTGTTGAAGCCAGCTTTTGGTAAGAGTTTGGCAGAGGTAGCCCTCAATCACTTACTTATTCGGTAAATTAGCTAGCAAGAGGCCAATCCTTAGGAATTTTATTTCCAAGATAAACCATTTGAATGCTACTAAATGACAAGAATAATCTATTGGAACACGGCACATGCATCACACATAAGGGAGACGCCGGAAGACTTATAATGAATTTGTCCGTTACTCCGTTTCGGGGTCTTTCACTTTTGCCATATCTGGAGAAATACTACAAGTCTTCCGTCCTACATTCCATGGCCACGGCCATCTGATTGACTGATGCTACCAAAAGAATCTCGTACTTGCGTTATTGTTATTGATTGTTTGATTGTCTTGGACCATGAGGATCCCAGTTATGCTTTTGATTTTCATTCCCATCATAATGCTGATGATAAATCTCCTCTTGCTCTGCCATAAGAACTTGGAGTCGGTATTATGGTGAAGATAATATAACACTGTCATTCTTACTCAAAGACAGACTGAAGGCCCATAATTTGACATTGAATTATTTATTATCCAAATAAAATAAGATTTTCACAGTATATAACAATTTTTTTTGTTTCTTATCTCTAGGACTTTGATGATTTAGGTTAGAAGTATTATTATTTTTAATCAGTCATCTCTTCTATTTTTTTTAGCAGAGCTCGAATATCACTAAGACTGTTAAATATAAAGAGGTTAAACGATTCAACATATAGAATATATACTTTTAAAAAGCTACCTATTTTTTTATGATTAAGTCCCTTAGACATAGTCTATACCAAAATATTGTTATTACAAGTGCAAAAGGAAACAAATTAAAATAAAAAGAAAACATAAGCCCAACAGGGCGATACAAAGGAGAATCATAAATAGAGAAAGCTAGACAGAAAAGTTTAATTTTTCGGGGGATCACTAGACTTGCCCTCCTCGGCCTCACCCATCTGCTCCATTTGTAATCTCTCAGCAAAGAGTAGGTATCCGTCTTAAATCTTATTCAAAGAAATCTTGAATGAACCAATATTGCTTATCCATCCTGGAAAGATAAGTCTTTGAATGCAAAGAGTAGGTATCTGTCTTAAATCCTCTTCAAAGAAAGCTGAAAGTAACCAATATCGCTTATCCATCCTGGAAAGATAGTCTTCACATATGCTTCAGAGCTCATTATATTACAAGCAGCAGATGATATGTGCACAATCAGAAATCTGAACCAATTTCAAAGCGAAAGCAATGGTCAAGACAAAGCAACAACTCGACTCGGGGAGAAGTCCATTTGATAGGAATTTTATAGCTAGCAGTAATAGAACATTTAGTAGATATTTAGTTTGTGTTAACTTAGTAACTTGTATTAGTCTATATTGAGTTTTTACAACTCTTTAACTTCTACCGTTTTACACTAATGAGGAAAAGAATGATTAATGTAAGCTAGGTTCATGTACTGGTTATAAATGAAAAAAATATTTATTTATGGAAGGGCATTTTTGTTCATCAACATTTAAGGTTACTTTAGTAATTTAATATTTTGATTTGGGGATTCCCACTTAAAGAATAGTGTGTGTGCGCGCGCGCGTGTATGTATGTGCCGCCTCTGAAGCACTTTTTTTTTGTGTGCGTGTGTATCTATACATATACATATATACATACATATGTAGAGAGATAGACTAATGAAGGTATCCATTCATGTCCTTAAGAAGAGTTGCTTTCTAATGGAAAAGTCACTATTTTTCAAGTAACACCTTTCATGAATGGACGTATCTTTTGAAAAAGAAAGACACGACAGTCAACCATGTAAGACCTCGTGAAATTTGTGAACTATCATTTAGGCCAGTTGTAAATGTGAATTTTCTTCTATTTTCCATGTGGTCATAGATGCCTATTCGAAAAATCAGGTCTTTCACTTTTCCCATGTCATCAAGTTCATTTCTTGAGTTTTTATCTGTTGTAAAATATGAATCTACTTTGATTTTCCTCATTGGTTACATGTGCTCTTTTCAATCAGTTCTTTTTTTTCCTTTTTTTCCTTTTTTTTATTACTTTTCCCAGCTTATCAAGTTCGTATGTTCTGTTGGTTCTCTGCTGTCATTGTGAATTTGATTTTTGATTTTCCATGTGTTGTGCATAGACGAATCATATGCGCAAGCTCAATTGGTACTTGAGCAGTGCCACTCAACTCAGTCGGATGAGAGTGCTAAAGGATTGGTTATGCTCGCTATGTCTACCTTATTTTCTGAAAGGTTAGTCTTTATGATGTGGTTATCCACTTACAATTTATGACCTGGAATTTGAAGTTAATAGTTTTATTCTCCTTTCCCGGTGTTTTCTTTTTGTTTTTTAAGAGGGAATTTTAGTGAAGCCATTGAGAAGCTCCAGAAAATTCAAGATTTGGGCTTGTCAACTTTAGCTGTTAGAGGTAAAACTTGTGGCACTTATGATAGAATCCACAGTTTGAAGTTCCCATTGTGACAATTAGACATATGATTGCAGTTGCCGCCTCTGAAGCACTTGCTGGGCTTTATTTAGAATCATATCAAGTAAGACTTGTTGAACTGCTGACGTCTACCTGAACTGATTTTTGGCATATCGTTTATGTATAATATAGGATCACTTAGCAAATATTTCTCCAAATGTAGGATGATTTTTCATCAGCAACTGCAGATATGTGCTTGCAACTGCTGGAAACCATAAGGCTAGAAATTGGTGGTGGTGGATCTGACATATTGGAAGCTCGTGCAAAAGCATTGAAAGGGCTGGTTGAGTTGGTCCATGGTAATGCTGAATCAGGTGAGAAATATAGTGGTCAAACTTTTCCTCTGCTTTGTGTGTTTCTTTGTTCTGAGGCTTTGAAATTGTGCATGTTCATTTCAGCTGAGTCATTCTTTGAAGGAGCTCAAGGTGATAAAGGTTGCTTTGGTAAGGATTTGCCTTGTGAGACATCACGGATGACATAGTTCTACAATATATTGATATCATGATGTATAGGCAATGTTGCACTA</genome_strand>
        <mrna_strand>CTGAAATCGAACCCCAAATCTGATAAACCTTTTGAATTTAGGGTTTTGCAGAAGCATTTACTATGTTTCGAATCGGAGCTAAGCTCTTTAGAGCTGCCAGAATTGGTGGCTCCGCCGTGTCCGATTTCAGGTCACCACCAACAAGATTTTTCTCCATTGACAACAATGTTAATACTGGTTTCAAGACCAACCCAGTTGCTCTTCAAATGATCAATTATGCTCTTTCTCTTGCCCGAGCTCAAAAATCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAATCATATGCGCAAGCTCAATTGGTACTTGAGCAGTGCCACTCAACTCAGTCGGATGAGAGTGCTAAAGGATTGGTTTTGCTCGCTATGTCTACCTTATTTTCTGAAAG......................................................................................................AGGGAATTTTAGTGAAGCCATTGAGAAGCTCCAGAAAATTCAAGATTTGGGATTGTCATCTTTAGCTGTTAGAG..........................................................................TTGCTGCCTCTGAAGCACTTGCTGGGCTTTATTTAGAATCATATCAA...................................................................................................GATGATTTTTCATCAGCAACTGCAGATATGTGCTTGCAACTGCTGGAAACCATAAGGCTAGAGATTGGTGGTGGTGGATCTGACATTTTGGAAGCTCGTGCAAAAGCATTGAAAGGGCTGGTTGAGTTGGTCCATGGTAATGTTGAATCAG....................................................................................CCCAGTCATTCTTTGAAGGAGCTCAAGGTGATAAAAGGTGCTTTG.....................................................................GCAACGTTGCACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E444298" ref_strand="+" ref_description="SGN-E444298 [cSTA-42-M12]">
      <seq>ctgaaatcgaaccccaaatctgataaaccttttgaatttagggttttgcagaagcatttactatgtttcgaatcggagctaagctctttagagctgccagaattggtggctccgccgtgtccgatttcaggtcaccaccaacaagatttttctccattgacaacaatgttaatactggtttcaagaccaacccagttgctcttcaaatgatcaattatgctctttctcttgcccgagctcaaaaatcagatgaatcatatgcgcaagctcaattggtacttgagcagtgccactcaactcagtcggatgagagtgctaaaggattggttttgctcgctatgtctaccttattttctgaaagagggaattttagtgaagccattgagaagctccagaaaattcaagatttgggattgtcatctttagctgttagagttgctgcctctgaagcacttgctgggctttatttagaatcatatcaagatgatttttcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="87024" stop="90821"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87324" g_stop="87572" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="249" r_length="249" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87573" i_stop="90096" i_length="2524">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.966" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90097" g_stop="90208" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="361" r_length="112" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90209" i_stop="90310" i_length="102">
            <donor d_prob="0.943" d_score="0.98"/>
            <acceptor a_prob="0.913" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90311" g_stop="90384" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="435" r_length="74" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90385" i_stop="90458" i_length="74">
            <donor d_prob="0.849" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90459" g_stop="90505" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="482" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90506" i_stop="90604" i_length="99">
            <donor d_prob="0.961" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90605" g_stop="90618" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="496" r_length="14" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E444298" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E444298" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87324" e_stop="87572"/>
          <exon e_start="90097" e_stop="90208"/>
          <exon e_start="90311" e_stop="90384"/>
          <exon e_start="90459" e_stop="90505"/>
          <exon e_start="90605" e_stop="90618"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAAATCGAACCCTAAATCTGATAAACCCTTTGAATTTAGGGTTTTGCAGAATCATTTACTATGTTTCGAATCGGAGCTAAGCTCTATAGAGCTGCGAGAATCGGTGGCTCCGCCGTGTCCGATTTCAGGTCACCATCAACAAGATTTTTCTCCATTAACAACAATGTTAATACTGGTTTCAAGACCAACCCAGTTGCTCTTCAAATGATCAATTATGCTCTTTCTCTAGCCCGGGCTCAAAAATCAGGTATTTTTTTTCACTATACCAATCTAATGAATTGGTATCTTCAGTTTGTTTTTGTGTTGTAAACTCGAATTTGCTTTGATTTCCCCATCTGGGTCATAGGTATTTTCTCTTTTCTCGACTCGTGAAGTTCATTTCTTGAGTTTAGTTGTGTTTTTGATGGATACAAATGTTTGAGGAAGATGATTTGGTTTAAGAAAATGTCAATAATGCTCTCTTTAGGTAGTAGTTAGGACAGGGACCTGCTAGGATAAACAAAGAATTGCTATTTCTCTTTTCTTATATGTTTTGGAAATTCACTCTACTGCAATTATTCATTAGCACATTTTGTGAGTTAACTGTTGGTCTTAGTATAGTTACTAGTGTTTGGAGAAAGAATTGAATTCACTCTCATATTTGTTGAAGCCAGCTTTTGGTAAGAGTTTGGCAGAGGTAGCCCTCAATCACTTACTTATTCGGTAAATTAGCTAGCAAGAGGCCAATCCTTAGGAATTTTATTTCCAAGATAAACCATTTGAATGCTACTAAATGACAAGAATAATCTATTGGAACACGGCACATGCATCACACATAAGGGAGACGCCGGAAGACTTATAATGAATTTGTCCGTTACTCCGTTTCGGGGTCTTTCACTTTTGCCATATCTGGAGAAATACTACAAGTCTTCCGTCCTACATTCCATGGCCACGGCCATCTGATTGACTGATGCTACCAAAAGAATCTCGTACTTGCGTTATTGTTATTGATTGTTTGATTGTCTTGGACCATGAGGATCCCAGTTATGCTTTTGATTTTCATTCCCATCATAATGCTGATGATAAATCTCCTCTTGCTCTGCCATAAGAACTTGGAGTCGGTATTATGGTGAAGATAATATAACACTGTCATTCTTACTCAAAGACAGACTGAAGGCCCATAATTTGACATTGAATTATTTATTATCCAAATAAAATAAGATTTTCACAGTATATAACAATTTTTTTTGTTTCTTATCTCTAGGACTTTGATGATTTAGGTTAGAAGTATTATTATTTTTAATCAGTCATCTCTTCTATTTTTTTTAGCAGAGCTCGAATATCACTAAGACTGTTAAATATAAAGAGGTTAAACGATTCAACATATAGAATATATACTTTTAAAAAGCTACCTATTTTTTTATGATTAAGTCCCTTAGACATAGTCTATACCAAAATATTGTTATTACAAGTGCAAAAGGAAACAAATTAAAATAAAAAGAAAACATAAGCCCAACAGGGCGATACAAAGGAGAATCATAAATAGAGAAAGCTAGACAGAAAAGTTTAATTTTTCGGGGGATCACTAGACTTGCCCTCCTCGGCCTCACCCATCTGCTCCATTTGTAATCTCTCAGCAAAGAGTAGGTATCCGTCTTAAATCTTATTCAAAGAAATCTTGAATGAACCAATATTGCTTATCCATCCTGGAAAGATAAGTCTTTGAATGCAAAGAGTAGGTATCTGTCTTAAATCCTCTTCAAAGAAAGCTGAAAGTAACCAATATCGCTTATCCATCCTGGAAAGATAGTCTTCACATATGCTTCAGAGCTCATTATATTACAAGCAGCAGATGATATGTGCACAATCAGAAATCTGAACCAATTTCAAAGCGAAAGCAATGGTCAAGACAAAGCAACAACTCGACTCGGGGAGAAGTCCATTTGATAGGAATTTTATAGCTAGCAGTAATAGAACATTTAGTAGATATTTAGTTTGTGTTAACTTAGTAACTTGTATTAGTCTATATTGAGTTTTTACAACTCTTTAACTTCTACCGTTTTACACTAATGAGGAAAAGAATGATTAATGTAAGCTAGGTTCATGTACTGGTTATAAATGAAAAAAATATTTATTTATGGAAGGGCATTTTTGTTCATCAACATTTAAGGTTACTTTAGTAATTTAATATTTTGATTTGGGGATTCCCACTTAAAGAATAGTGTGTGTGCGCGCGCGCGTGTATGTATGTGCCGCCTCTGAAGCACTTTTTTTTTGTGTGCGTGTGTATCTATACATATACATATATACATACATATGTAGAGAGATAGACTAATGAAGGTATCCATTCATGTCCTTAAGAAGAGTTGCTTTCTAATGGAAAAGTCACTATTTTTCAAGTAACACCTTTCATGAATGGACGTATCTTTTGAAAAAGAAAGACACGACAGTCAACCATGTAAGACCTCGTGAAATTTGTGAACTATCATTTAGGCCAGTTGTAAATGTGAATTTTCTTCTATTTTCCATGTGGTCATAGATGCCTATTCGAAAAATCAGGTCTTTCACTTTTCCCATGTCATCAAGTTCATTTCTTGAGTTTTTATCTGTTGTAAAATATGAATCTACTTTGATTTTCCTCATTGGTTACATGTGCTCTTTTCAATCAGTTCTTTTTTTTCCTTTTTTTCCTTTTTTTTATTACTTTTCCCAGCTTATCAAGTTCGTATGTTCTGTTGGTTCTCTGCTGTCATTGTGAATTTGATTTTTGATTTTCCATGTGTTGTGCATAGACGAATCATATGCGCAAGCTCAATTGGTACTTGAGCAGTGCCACTCAACTCAGTCGGATGAGAGTGCTAAAGGATTGGTTATGCTCGCTATGTCTACCTTATTTTCTGAAAGGTTAGTCTTTATGATGTGGTTATCCACTTACAATTTATGACCTGGAATTTGAAGTTAATAGTTTTATTCTCCTTTCCCGGTGTTTTCTTTTTGTTTTTTAAGAGGGAATTTTAGTGAAGCCATTGAGAAGCTCCAGAAAATTCAAGATTTGGGCTTGTCAACTTTAGCTGTTAGAGGTAAAACTTGTGGCACTTATGATAGAATCCACAGTTTGAAGTTCCCATTGTGACAATTAGACATATGATTGCAGTTGCCGCCTCTGAAGCACTTGCTGGGCTTTATTTAGAATCATATCAAGTAAGACTTGTTGAACTGCTGACGTCTACCTGAACTGATTTTTGGCATATCGTTTATGTATAATATAGGATCACTTAGCAAATATTTCTCCAAATGTAGGATGATTTTTCATC</genome_strand>
        <mrna_strand>CTGAAATCGAACCCCAAATCTGATAAACCTTTTGAATTTAGGGTTTTGCAGAAGCATTTACTATGTTTCGAATCGGAGCTAAGCTCTTTAGAGCTGCCAGAATTGGTGGCTCCGCCGTGTCCGATTTCAGGTCACCACCAACAAGATTTTTCTCCATTGACAACAATGTTAATACTGGTTTCAAGACCAACCCAGTTGCTCTTCAAATGATCAATTATGCTCTTTCTCTTGCCCGAGCTCAAAAATCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAATCATATGCGCAAGCTCAATTGGTACTTGAGCAGTGCCACTCAACTCAGTCGGATGAGAGTGCTAAAGGATTGGTTTTGCTCGCTATGTCTACCTTATTTTCTGAAAG......................................................................................................AGGGAATTTTAGTGAAGCCATTGAGAAGCTCCAGAAAATTCAAGATTTGGGATTGTCATCTTTAGCTGTTAGAG..........................................................................TTGCTGCCTCTGAAGCACTTGCTGGGCTTTATTTAGAATCATATCAA...................................................................................................GATGATTTTTCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E486501" ref_strand="+" ref_description="SGN-E486501 [cSTE-22-I4]">
      <seq>gaaccccaaatctgataaaccttttgaatttagggttttgcagaagcatttactatgtttcgaatcggagctaagctctttagagctgccagaattggtggctccgccgtgtccgatttcaggtcaccaccaacaagatttttctccattgacaacaatgttaatactggtttcaagaccaacccagttgctcttcaaatgatcaattatgctctttctcttgcccgagctcaaaaatcagatgaatcatatgcgcaagctcaattggtacttgagcagtgccactcaactcagtcggatgagagtgctaaaggattggttttgctcgctatgtctaccttattttctgaaagagggaattttagtgaagccattgagaagctccagaaaattcaagatttgggattgtcatctttagctgttagagttgctgcctctgaagcacttgctgggctttatttagaatcatatncagatgatttttcatcagcaactgcagatatgtgcttgcaactgctgggaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="87032" stop="90954"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87332" g_stop="87572" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87573" i_stop="90096" i_length="2524">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.966" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90097" g_stop="90208" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="353" r_length="112" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90209" i_stop="90310" i_length="102">
            <donor d_prob="0.943" d_score="0.98"/>
            <acceptor a_prob="0.913" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90311" g_stop="90384" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="427" r_length="74" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90385" i_stop="90458" i_length="74">
            <donor d_prob="0.849" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90459" g_stop="90505" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="474" r_length="47" r_score="0.936"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90506" i_stop="90604" i_length="99">
            <donor d_prob="0.961" d_score="0.94"/>
            <acceptor a_prob="0.958" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90605" g_stop="90656" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="526" r_length="52" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E486501" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E486501" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87332" e_stop="87572"/>
          <exon e_start="90097" e_stop="90208"/>
          <exon e_start="90311" e_stop="90384"/>
          <exon e_start="90459" e_stop="90505"/>
          <exon e_start="90605" e_stop="90656"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACCCTAAATCTGATAAACCCTTTGAATTTAGGGTTTTGCAGAATCATTTACTATGTTTCGAATCGGAGCTAAGCTCTATAGAGCTGCGAGAATCGGTGGCTCCGCCGTGTCCGATTTCAGGTCACCATCAACAAGATTTTTCTCCATTAACAACAATGTTAATACTGGTTTCAAGACCAACCCAGTTGCTCTTCAAATGATCAATTATGCTCTTTCTCTAGCCCGGGCTCAAAAATCAGGTATTTTTTTTCACTATACCAATCTAATGAATTGGTATCTTCAGTTTGTTTTTGTGTTGTAAACTCGAATTTGCTTTGATTTCCCCATCTGGGTCATAGGTATTTTCTCTTTTCTCGACTCGTGAAGTTCATTTCTTGAGTTTAGTTGTGTTTTTGATGGATACAAATGTTTGAGGAAGATGATTTGGTTTAAGAAAATGTCAATAATGCTCTCTTTAGGTAGTAGTTAGGACAGGGACCTGCTAGGATAAACAAAGAATTGCTATTTCTCTTTTCTTATATGTTTTGGAAATTCACTCTACTGCAATTATTCATTAGCACATTTTGTGAGTTAACTGTTGGTCTTAGTATAGTTACTAGTGTTTGGAGAAAGAATTGAATTCACTCTCATATTTGTTGAAGCCAGCTTTTGGTAAGAGTTTGGCAGAGGTAGCCCTCAATCACTTACTTATTCGGTAAATTAGCTAGCAAGAGGCCAATCCTTAGGAATTTTATTTCCAAGATAAACCATTTGAATGCTACTAAATGACAAGAATAATCTATTGGAACACGGCACATGCATCACACATAAGGGAGACGCCGGAAGACTTATAATGAATTTGTCCGTTACTCCGTTTCGGGGTCTTTCACTTTTGCCATATCTGGAGAAATACTACAAGTCTTCCGTCCTACATTCCATGGCCACGGCCATCTGATTGACTGATGCTACCAAAAGAATCTCGTACTTGCGTTATTGTTATTGATTGTTTGATTGTCTTGGACCATGAGGATCCCAGTTATGCTTTTGATTTTCATTCCCATCATAATGCTGATGATAAATCTCCTCTTGCTCTGCCATAAGAACTTGGAGTCGGTATTATGGTGAAGATAATATAACACTGTCATTCTTACTCAAAGACAGACTGAAGGCCCATAATTTGACATTGAATTATTTATTATCCAAATAAAATAAGATTTTCACAGTATATAACAATTTTTTTTGTTTCTTATCTCTAGGACTTTGATGATTTAGGTTAGAAGTATTATTATTTTTAATCAGTCATCTCTTCTATTTTTTTTAGCAGAGCTCGAATATCACTAAGACTGTTAAATATAAAGAGGTTAAACGATTCAACATATAGAATATATACTTTTAAAAAGCTACCTATTTTTTTATGATTAAGTCCCTTAGACATAGTCTATACCAAAATATTGTTATTACAAGTGCAAAAGGAAACAAATTAAAATAAAAAGAAAACATAAGCCCAACAGGGCGATACAAAGGAGAATCATAAATAGAGAAAGCTAGACAGAAAAGTTTAATTTTTCGGGGGATCACTAGACTTGCCCTCCTCGGCCTCACCCATCTGCTCCATTTGTAATCTCTCAGCAAAGAGTAGGTATCCGTCTTAAATCTTATTCAAAGAAATCTTGAATGAACCAATATTGCTTATCCATCCTGGAAAGATAAGTCTTTGAATGCAAAGAGTAGGTATCTGTCTTAAATCCTCTTCAAAGAAAGCTGAAAGTAACCAATATCGCTTATCCATCCTGGAAAGATAGTCTTCACATATGCTTCAGAGCTCATTATATTACAAGCAGCAGATGATATGTGCACAATCAGAAATCTGAACCAATTTCAAAGCGAAAGCAATGGTCAAGACAAAGCAACAACTCGACTCGGGGAGAAGTCCATTTGATAGGAATTTTATAGCTAGCAGTAATAGAACATTTAGTAGATATTTAGTTTGTGTTAACTTAGTAACTTGTATTAGTCTATATTGAGTTTTTACAACTCTTTAACTTCTACCGTTTTACACTAATGAGGAAAAGAATGATTAATGTAAGCTAGGTTCATGTACTGGTTATAAATGAAAAAAATATTTATTTATGGAAGGGCATTTTTGTTCATCAACATTTAAGGTTACTTTAGTAATTTAATATTTTGATTTGGGGATTCCCACTTAAAGAATAGTGTGTGTGCGCGCGCGCGTGTATGTATGTGCCGCCTCTGAAGCACTTTTTTTTTGTGTGCGTGTGTATCTATACATATACATATATACATACATATGTAGAGAGATAGACTAATGAAGGTATCCATTCATGTCCTTAAGAAGAGTTGCTTTCTAATGGAAAAGTCACTATTTTTCAAGTAACACCTTTCATGAATGGACGTATCTTTTGAAAAAGAAAGACACGACAGTCAACCATGTAAGACCTCGTGAAATTTGTGAACTATCATTTAGGCCAGTTGTAAATGTGAATTTTCTTCTATTTTCCATGTGGTCATAGATGCCTATTCGAAAAATCAGGTCTTTCACTTTTCCCATGTCATCAAGTTCATTTCTTGAGTTTTTATCTGTTGTAAAATATGAATCTACTTTGATTTTCCTCATTGGTTACATGTGCTCTTTTCAATCAGTTCTTTTTTTTCCTTTTTTTCCTTTTTTTTATTACTTTTCCCAGCTTATCAAGTTCGTATGTTCTGTTGGTTCTCTGCTGTCATTGTGAATTTGATTTTTGATTTTCCATGTGTTGTGCATAGACGAATCATATGCGCAAGCTCAATTGGTACTTGAGCAGTGCCACTCAACTCAGTCGGATGAGAGTGCTAAAGGATTGGTTATGCTCGCTATGTCTACCTTATTTTCTGAAAGGTTAGTCTTTATGATGTGGTTATCCACTTACAATTTATGACCTGGAATTTGAAGTTAATAGTTTTATTCTCCTTTCCCGGTGTTTTCTTTTTGTTTTTTAAGAGGGAATTTTAGTGAAGCCATTGAGAAGCTCCAGAAAATTCAAGATTTGGGCTTGTCAACTTTAGCTGTTAGAGGTAAAACTTGTGGCACTTATGATAGAATCCACAGTTTGAAGTTCCCATTGTGACAATTAGACATATGATTGCAGTTGCCGCCTCTGAAGCACTTGCTGGGCTTTATTTAGAATCATATCAAGTAAGACTTGTTGAACTGCTGACGTCTACCTGAACTGATTTTTGGCATATCGTTTATGTATAATATAGGATCACTTAGCAAATATTTCTCCAAATGTAGGATGATTTTTCATCAGCAACTGCAGATATGTGCTTGCAACTGCTGGAAACCA</genome_strand>
        <mrna_strand>GAACCCCAAATCTGATAAACCTTTTGAATTTAGGGTTTTGCAGAAGCATTTACTATGTTTCGAATCGGAGCTAAGCTCTTTAGAGCTGCCAGAATTGGTGGCTCCGCCGTGTCCGATTTCAGGTCACCACCAACAAGATTTTTCTCCATTGACAACAATGTTAATACTGGTTTCAAGACCAACCCAGTTGCTCTTCAAATGATCAATTATGCTCTTTCTCTTGCCCGAGCTCAAAAATCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAATCATATGCGCAAGCTCAATTGGTACTTGAGCAGTGCCACTCAACTCAGTCGGATGAGAGTGCTAAAGGATTGGTTTTGCTCGCTATGTCTACCTTATTTTCTGAAAG......................................................................................................AGGGAATTTTAGTGAAGCCATTGAGAAGCTCCAGAAAATTCAAGATTTGGGATTGTCATCTTTAGCTGTTAGAG..........................................................................TTGCTGCCTCTGAAGCACTTGCTGGGCTTTATTTAGAATCATATNCA...................................................................................................GATGATTTTTCATCAGCAACTGCAGATATGTGCTTGCAACTGCTGGGAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E263869" ref_strand="+" ref_description="SGN-E263869 [cLEG-73-A6]">
      <seq>tgcatttagggttttgcagaatcatttactatgtttcgaatcggagctaagctctatagagctgcgagaatcggtggctccgccgtgtccgatttcaggtcaccatcaacaagatttttctccattaacaacaatgttaatactggtttcaagaccaacccagttgctcttcaaatgatcaattatgctctttctctatcccgggctctaaaatctcacgaatgatatgcgcaagctcaattggtacttgagcagtgccactcaactcactcggatgagagtgctaaaagattggctatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="87056" stop="90480"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87356" g_stop="87572" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87573" i_stop="90096" i_length="2524">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.966" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90097" g_stop="90180" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="301" r_length="84" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E263869" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>301</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E263869" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87356" e_stop="87572"/>
          <exon e_start="90097" e_stop="90180"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATTTAGGGTTTTGCAGAATCATTTACTATGTTTCGAATCGGAGCTAAGCTCTATAGAGCTGCGAGAATCGGTGGCTCCGCCGTGTCCGATTTCAGGTCACCATCAACAAGATTTTTCTCCATTAACAACAATGTTAATACTGGTTTCAAGACCAACCCAGTTGCTCTTCAAATGATCAATTATGCTCTTTCTCTAGCCCGGGCTCAAAAATCAGGTATTTTTTTTCACTATACCAATCTAATGAATTGGTATCTTCAGTTTGTTTTTGTGTTGTAAACTCGAATTTGCTTTGATTTCCCCATCTGGGTCATAGGTATTTTCTCTTTTCTCGACTCGTGAAGTTCATTTCTTGAGTTTAGTTGTGTTTTTGATGGATACAAATGTTTGAGGAAGATGATTTGGTTTAAGAAAATGTCAATAATGCTCTCTTTAGGTAGTAGTTAGGACAGGGACCTGCTAGGATAAACAAAGAATTGCTATTTCTCTTTTCTTATATGTTTTGGAAATTCACTCTACTGCAATTATTCATTAGCACATTTTGTGAGTTAACTGTTGGTCTTAGTATAGTTACTAGTGTTTGGAGAAAGAATTGAATTCACTCTCATATTTGTTGAAGCCAGCTTTTGGTAAGAGTTTGGCAGAGGTAGCCCTCAATCACTTACTTATTCGGTAAATTAGCTAGCAAGAGGCCAATCCTTAGGAATTTTATTTCCAAGATAAACCATTTGAATGCTACTAAATGACAAGAATAATCTATTGGAACACGGCACATGCATCACACATAAGGGAGACGCCGGAAGACTTATAATGAATTTGTCCGTTACTCCGTTTCGGGGTCTTTCACTTTTGCCATATCTGGAGAAATACTACAAGTCTTCCGTCCTACATTCCATGGCCACGGCCATCTGATTGACTGATGCTACCAAAAGAATCTCGTACTTGCGTTATTGTTATTGATTGTTTGATTGTCTTGGACCATGAGGATCCCAGTTATGCTTTTGATTTTCATTCCCATCATAATGCTGATGATAAATCTCCTCTTGCTCTGCCATAAGAACTTGGAGTCGGTATTATGGTGAAGATAATATAACACTGTCATTCTTACTCAAAGACAGACTGAAGGCCCATAATTTGACATTGAATTATTTATTATCCAAATAAAATAAGATTTTCACAGTATATAACAATTTTTTTTGTTTCTTATCTCTAGGACTTTGATGATTTAGGTTAGAAGTATTATTATTTTTAATCAGTCATCTCTTCTATTTTTTTTAGCAGAGCTCGAATATCACTAAGACTGTTAAATATAAAGAGGTTAAACGATTCAACATATAGAATATATACTTTTAAAAAGCTACCTATTTTTTTATGATTAAGTCCCTTAGACATAGTCTATACCAAAATATTGTTATTACAAGTGCAAAAGGAAACAAATTAAAATAAAAAGAAAACATAAGCCCAACAGGGCGATACAAAGGAGAATCATAAATAGAGAAAGCTAGACAGAAAAGTTTAATTTTTCGGGGGATCACTAGACTTGCCCTCCTCGGCCTCACCCATCTGCTCCATTTGTAATCTCTCAGCAAAGAGTAGGTATCCGTCTTAAATCTTATTCAAAGAAATCTTGAATGAACCAATATTGCTTATCCATCCTGGAAAGATAAGTCTTTGAATGCAAAGAGTAGGTATCTGTCTTAAATCCTCTTCAAAGAAAGCTGAAAGTAACCAATATCGCTTATCCATCCTGGAAAGATAGTCTTCACATATGCTTCAGAGCTCATTATATTACAAGCAGCAGATGATATGTGCACAATCAGAAATCTGAACCAATTTCAAAGCGAAAGCAATGGTCAAGACAAAGCAACAACTCGACTCGGGGAGAAGTCCATTTGATAGGAATTTTATAGCTAGCAGTAATAGAACATTTAGTAGATATTTAGTTTGTGTTAACTTAGTAACTTGTATTAGTCTATATTGAGTTTTTACAACTCTTTAACTTCTACCGTTTTACACTAATGAGGAAAAGAATGATTAATGTAAGCTAGGTTCATGTACTGGTTATAAATGAAAAAAATATTTATTTATGGAAGGGCATTTTTGTTCATCAACATTTAAGGTTACTTTAGTAATTTAATATTTTGATTTGGGGATTCCCACTTAAAGAATAGTGTGTGTGCGCGCGCGCGTGTATGTATGTGCCGCCTCTGAAGCACTTTTTTTTTGTGTGCGTGTGTATCTATACATATACATATATACATACATATGTAGAGAGATAGACTAATGAAGGTATCCATTCATGTCCTTAAGAAGAGTTGCTTTCTAATGGAAAAGTCACTATTTTTCAAGTAACACCTTTCATGAATGGACGTATCTTTTGAAAAAGAAAGACACGACAGTCAACCATGTAAGACCTCGTGAAATTTGTGAACTATCATTTAGGCCAGTTGTAAATGTGAATTTTCTTCTATTTTCCATGTGGTCATAGATGCCTATTCGAAAAATCAGGTCTTTCACTTTTCCCATGTCATCAAGTTCATTTCTTGAGTTTTTATCTGTTGTAAAATATGAATCTACTTTGATTTTCCTCATTGGTTACATGTGCTCTTTTCAATCAGTTCTTTTTTTTCCTTTTTTTCCTTTTTTTTATTACTTTTCCCAGCTTATCAAGTTCGTATGTTCTGTTGGTTCTCTGCTGTCATTGTGAATTTGATTTTTGATTTTCCATGTGTTGTGCATAGACGAATCATATGCGCAAGCTCAATTGGTACTTGAGCAGTGCCACTCAACTCAGTCGGATGAGAGTGCTAAAGGATTGGTTATGC</genome_strand>
        <mrna_strand>TGCATTTAGGGTTTTGCAGAATCATTTACTATGTTTCGAATCGGAGCTAAGCTCTATAGAGCTGCGAGAATCGGTGGCTCCGCCGTGTCCGATTTCAGGTCACCATCAACAAGATTTTTCTCCATTAACAACAATGTTAATACTGGTTTCAAGACCAACCCAGTTGCTCTTCAAATGATCAATTATGCTCTTTCTCTATCCCGGGCTCTAAAATCTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGAATGATATGCGCAAGCTCAATTGGTACTTGAGCAGTGCCACTCAACTCACTCGGATGAGAGTGCTAAAAGATTGGCTATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E359084" ref_strand="+" ref_description="SGN-E359084 [cLHT-11-N11]">
      <seq>ggttttgcagaatcatttactatgtttcgaatcggagctaaactctatagagctgcgagaattggtggctccgccgtgtccgatttcaggtcaccaccaacaagatttttctccattaacaacaatgttaatactggtttcaagaccaacccagttgctcttcaaatgatcaattatgctctttctctagcccgggctcaaaaatcagatgaatcatatgcgcaagctcaattggtacttgagcagtgccactcaactcagtcggatgagagtgctaaaggattggttttgctcactatgtctaccttattttctgaaagagggaattttagtgaagccattgagaagctccagaaaattcaagatttgggcttgtcaactttagctgttagagttgccgcctctgaagcacttgctgggctttatttacaatcatatcaagatgatttttcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="87065" stop="90821"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87365" g_stop="87572" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="208" r_length="208" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87573" i_stop="90096" i_length="2524">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90097" g_stop="90208" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="320" r_length="112" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90209" i_stop="90310" i_length="102">
            <donor d_prob="0.943" d_score="0.96"/>
            <acceptor a_prob="0.913" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90311" g_stop="90384" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="394" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90385" i_stop="90458" i_length="74">
            <donor d_prob="0.849" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90459" g_stop="90505" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="441" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90506" i_stop="90604" i_length="99">
            <donor d_prob="0.961" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90605" g_stop="90618" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="455" r_length="14" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E359084" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359084" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87365" e_stop="87572"/>
          <exon e_start="90097" e_stop="90208"/>
          <exon e_start="90311" e_stop="90384"/>
          <exon e_start="90459" e_stop="90505"/>
          <exon e_start="90605" e_stop="90618"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTTGCAGAATCATTTACTATGTTTCGAATCGGAGCTAAGCTCTATAGAGCTGCGAGAATCGGTGGCTCCGCCGTGTCCGATTTCAGGTCACCATCAACAAGATTTTTCTCCATTAACAACAATGTTAATACTGGTTTCAAGACCAACCCAGTTGCTCTTCAAATGATCAATTATGCTCTTTCTCTAGCCCGGGCTCAAAAATCAGGTATTTTTTTTCACTATACCAATCTAATGAATTGGTATCTTCAGTTTGTTTTTGTGTTGTAAACTCGAATTTGCTTTGATTTCCCCATCTGGGTCATAGGTATTTTCTCTTTTCTCGACTCGTGAAGTTCATTTCTTGAGTTTAGTTGTGTTTTTGATGGATACAAATGTTTGAGGAAGATGATTTGGTTTAAGAAAATGTCAATAATGCTCTCTTTAGGTAGTAGTTAGGACAGGGACCTGCTAGGATAAACAAAGAATTGCTATTTCTCTTTTCTTATATGTTTTGGAAATTCACTCTACTGCAATTATTCATTAGCACATTTTGTGAGTTAACTGTTGGTCTTAGTATAGTTACTAGTGTTTGGAGAAAGAATTGAATTCACTCTCATATTTGTTGAAGCCAGCTTTTGGTAAGAGTTTGGCAGAGGTAGCCCTCAATCACTTACTTATTCGGTAAATTAGCTAGCAAGAGGCCAATCCTTAGGAATTTTATTTCCAAGATAAACCATTTGAATGCTACTAAATGACAAGAATAATCTATTGGAACACGGCACATGCATCACACATAAGGGAGACGCCGGAAGACTTATAATGAATTTGTCCGTTACTCCGTTTCGGGGTCTTTCACTTTTGCCATATCTGGAGAAATACTACAAGTCTTCCGTCCTACATTCCATGGCCACGGCCATCTGATTGACTGATGCTACCAAAAGAATCTCGTACTTGCGTTATTGTTATTGATTGTTTGATTGTCTTGGACCATGAGGATCCCAGTTATGCTTTTGATTTTCATTCCCATCATAATGCTGATGATAAATCTCCTCTTGCTCTGCCATAAGAACTTGGAGTCGGTATTATGGTGAAGATAATATAACACTGTCATTCTTACTCAAAGACAGACTGAAGGCCCATAATTTGACATTGAATTATTTATTATCCAAATAAAATAAGATTTTCACAGTATATAACAATTTTTTTTGTTTCTTATCTCTAGGACTTTGATGATTTAGGTTAGAAGTATTATTATTTTTAATCAGTCATCTCTTCTATTTTTTTTAGCAGAGCTCGAATATCACTAAGACTGTTAAATATAAAGAGGTTAAACGATTCAACATATAGAATATATACTTTTAAAAAGCTACCTATTTTTTTATGATTAAGTCCCTTAGACATAGTCTATACCAAAATATTGTTATTACAAGTGCAAAAGGAAACAAATTAAAATAAAAAGAAAACATAAGCCCAACAGGGCGATACAAAGGAGAATCATAAATAGAGAAAGCTAGACAGAAAAGTTTAATTTTTCGGGGGATCACTAGACTTGCCCTCCTCGGCCTCACCCATCTGCTCCATTTGTAATCTCTCAGCAAAGAGTAGGTATCCGTCTTAAATCTTATTCAAAGAAATCTTGAATGAACCAATATTGCTTATCCATCCTGGAAAGATAAGTCTTTGAATGCAAAGAGTAGGTATCTGTCTTAAATCCTCTTCAAAGAAAGCTGAAAGTAACCAATATCGCTTATCCATCCTGGAAAGATAGTCTTCACATATGCTTCAGAGCTCATTATATTACAAGCAGCAGATGATATGTGCACAATCAGAAATCTGAACCAATTTCAAAGCGAAAGCAATGGTCAAGACAAAGCAACAACTCGACTCGGGGAGAAGTCCATTTGATAGGAATTTTATAGCTAGCAGTAATAGAACATTTAGTAGATATTTAGTTTGTGTTAACTTAGTAACTTGTATTAGTCTATATTGAGTTTTTACAACTCTTTAACTTCTACCGTTTTACACTAATGAGGAAAAGAATGATTAATGTAAGCTAGGTTCATGTACTGGTTATAAATGAAAAAAATATTTATTTATGGAAGGGCATTTTTGTTCATCAACATTTAAGGTTACTTTAGTAATTTAATATTTTGATTTGGGGATTCCCACTTAAAGAATAGTGTGTGTGCGCGCGCGCGTGTATGTATGTGCCGCCTCTGAAGCACTTTTTTTTTGTGTGCGTGTGTATCTATACATATACATATATACATACATATGTAGAGAGATAGACTAATGAAGGTATCCATTCATGTCCTTAAGAAGAGTTGCTTTCTAATGGAAAAGTCACTATTTTTCAAGTAACACCTTTCATGAATGGACGTATCTTTTGAAAAAGAAAGACACGACAGTCAACCATGTAAGACCTCGTGAAATTTGTGAACTATCATTTAGGCCAGTTGTAAATGTGAATTTTCTTCTATTTTCCATGTGGTCATAGATGCCTATTCGAAAAATCAGGTCTTTCACTTTTCCCATGTCATCAAGTTCATTTCTTGAGTTTTTATCTGTTGTAAAATATGAATCTACTTTGATTTTCCTCATTGGTTACATGTGCTCTTTTCAATCAGTTCTTTTTTTTCCTTTTTTTCCTTTTTTTTATTACTTTTCCCAGCTTATCAAGTTCGTATGTTCTGTTGGTTCTCTGCTGTCATTGTGAATTTGATTTTTGATTTTCCATGTGTTGTGCATAGACGAATCATATGCGCAAGCTCAATTGGTACTTGAGCAGTGCCACTCAACTCAGTCGGATGAGAGTGCTAAAGGATTGGTTATGCTCGCTATGTCTACCTTATTTTCTGAAAGGTTAGTCTTTATGATGTGGTTATCCACTTACAATTTATGACCTGGAATTTGAAGTTAATAGTTTTATTCTCCTTTCCCGGTGTTTTCTTTTTGTTTTTTAAGAGGGAATTTTAGTGAAGCCATTGAGAAGCTCCAGAAAATTCAAGATTTGGGCTTGTCAACTTTAGCTGTTAGAGGTAAAACTTGTGGCACTTATGATAGAATCCACAGTTTGAAGTTCCCATTGTGACAATTAGACATATGATTGCAGTTGCCGCCTCTGAAGCACTTGCTGGGCTTTATTTAGAATCATATCAAGTAAGACTTGTTGAACTGCTGACGTCTACCTGAACTGATTTTTGGCATATCGTTTATGTATAATATAGGATCACTTAGCAAATATTTCTCCAAATGTAGGATGATTTTTCATC</genome_strand>
        <mrna_strand>GGTTTTGCAGAATCATTTACTATGTTTCGAATCGGAGCTAAACTCTATAGAGCTGCGAGAATTGGTGGCTCCGCCGTGTCCGATTTCAGGTCACCACCAACAAGATTTTTCTCCATTAACAACAATGTTAATACTGGTTTCAAGACCAACCCAGTTGCTCTTCAAATGATCAATTATGCTCTTTCTCTAGCCCGGGCTCAAAAATCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAATCATATGCGCAAGCTCAATTGGTACTTGAGCAGTGCCACTCAACTCAGTCGGATGAGAGTGCTAAAGGATTGGTTTTGCTCACTATGTCTACCTTATTTTCTGAAAG......................................................................................................AGGGAATTTTAGTGAAGCCATTGAGAAGCTCCAGAAAATTCAAGATTTGGGCTTGTCAACTTTAGCTGTTAGAG..........................................................................TTGCCGCCTCTGAAGCACTTGCTGGGCTTTATTTACAATCATATCAA...................................................................................................GATGATTTTTCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E300609" ref_strand="+" ref_description="SGN-E300609 [cLET-45-B5]">
      <seq>cggagctaagctctatagagctgcgagaatcggtggctccgccgtgtccgatttcaggtcaccatcaacaagatttttctccattaacaacaatgttaatactggtttcaagaccaacccagttgctcttcaaatgatcaattatgctctttctctagcccgggctcaaaaatcagacgaatcatatgcgcaagctcaattggtacttgagcagtgccactcaactcagtcggatgagagtgctaaaggattggttatgctcgctatgtctaccttattttctgaaagagggaattttagtgaagccattgagaagctccagaaaattcaagatttgggcttgtcaactttagctgttagagttgccgcctctgaagcacttgctgggctttatttagaatcatatcaagatgatttttcatcagcaactgcagatatgtgcttgcaactgctggaaaccataaggctagaaattggtggtggtggatctgacatattggaagctcgtgcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="87097" stop="91008"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87397" g_stop="87572" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87573" i_stop="90096" i_length="2524">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90097" g_stop="90208" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="288" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90209" i_stop="90310" i_length="102">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.913" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90311" g_stop="90384" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="362" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90385" i_stop="90458" i_length="74">
            <donor d_prob="0.849" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90459" g_stop="90505" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="409" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90506" i_stop="90604" i_length="99">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90605" g_stop="90708" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="513" r_length="104" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E300609" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300609" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87397" e_stop="87572"/>
          <exon e_start="90097" e_stop="90208"/>
          <exon e_start="90311" e_stop="90384"/>
          <exon e_start="90459" e_stop="90505"/>
          <exon e_start="90605" e_stop="90708"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAGCTAAGCTCTATAGAGCTGCGAGAATCGGTGGCTCCGCCGTGTCCGATTTCAGGTCACCATCAACAAGATTTTTCTCCATTAACAACAATGTTAATACTGGTTTCAAGACCAACCCAGTTGCTCTTCAAATGATCAATTATGCTCTTTCTCTAGCCCGGGCTCAAAAATCAGGTATTTTTTTTCACTATACCAATCTAATGAATTGGTATCTTCAGTTTGTTTTTGTGTTGTAAACTCGAATTTGCTTTGATTTCCCCATCTGGGTCATAGGTATTTTCTCTTTTCTCGACTCGTGAAGTTCATTTCTTGAGTTTAGTTGTGTTTTTGATGGATACAAATGTTTGAGGAAGATGATTTGGTTTAAGAAAATGTCAATAATGCTCTCTTTAGGTAGTAGTTAGGACAGGGACCTGCTAGGATAAACAAAGAATTGCTATTTCTCTTTTCTTATATGTTTTGGAAATTCACTCTACTGCAATTATTCATTAGCACATTTTGTGAGTTAACTGTTGGTCTTAGTATAGTTACTAGTGTTTGGAGAAAGAATTGAATTCACTCTCATATTTGTTGAAGCCAGCTTTTGGTAAGAGTTTGGCAGAGGTAGCCCTCAATCACTTACTTATTCGGTAAATTAGCTAGCAAGAGGCCAATCCTTAGGAATTTTATTTCCAAGATAAACCATTTGAATGCTACTAAATGACAAGAATAATCTATTGGAACACGGCACATGCATCACACATAAGGGAGACGCCGGAAGACTTATAATGAATTTGTCCGTTACTCCGTTTCGGGGTCTTTCACTTTTGCCATATCTGGAGAAATACTACAAGTCTTCCGTCCTACATTCCATGGCCACGGCCATCTGATTGACTGATGCTACCAAAAGAATCTCGTACTTGCGTTATTGTTATTGATTGTTTGATTGTCTTGGACCATGAGGATCCCAGTTATGCTTTTGATTTTCATTCCCATCATAATGCTGATGATAAATCTCCTCTTGCTCTGCCATAAGAACTTGGAGTCGGTATTATGGTGAAGATAATATAACACTGTCATTCTTACTCAAAGACAGACTGAAGGCCCATAATTTGACATTGAATTATTTATTATCCAAATAAAATAAGATTTTCACAGTATATAACAATTTTTTTTGTTTCTTATCTCTAGGACTTTGATGATTTAGGTTAGAAGTATTATTATTTTTAATCAGTCATCTCTTCTATTTTTTTTAGCAGAGCTCGAATATCACTAAGACTGTTAAATATAAAGAGGTTAAACGATTCAACATATAGAATATATACTTTTAAAAAGCTACCTATTTTTTTATGATTAAGTCCCTTAGACATAGTCTATACCAAAATATTGTTATTACAAGTGCAAAAGGAAACAAATTAAAATAAAAAGAAAACATAAGCCCAACAGGGCGATACAAAGGAGAATCATAAATAGAGAAAGCTAGACAGAAAAGTTTAATTTTTCGGGGGATCACTAGACTTGCCCTCCTCGGCCTCACCCATCTGCTCCATTTGTAATCTCTCAGCAAAGAGTAGGTATCCGTCTTAAATCTTATTCAAAGAAATCTTGAATGAACCAATATTGCTTATCCATCCTGGAAAGATAAGTCTTTGAATGCAAAGAGTAGGTATCTGTCTTAAATCCTCTTCAAAGAAAGCTGAAAGTAACCAATATCGCTTATCCATCCTGGAAAGATAGTCTTCACATATGCTTCAGAGCTCATTATATTACAAGCAGCAGATGATATGTGCACAATCAGAAATCTGAACCAATTTCAAAGCGAAAGCAATGGTCAAGACAAAGCAACAACTCGACTCGGGGAGAAGTCCATTTGATAGGAATTTTATAGCTAGCAGTAATAGAACATTTAGTAGATATTTAGTTTGTGTTAACTTAGTAACTTGTATTAGTCTATATTGAGTTTTTACAACTCTTTAACTTCTACCGTTTTACACTAATGAGGAAAAGAATGATTAATGTAAGCTAGGTTCATGTACTGGTTATAAATGAAAAAAATATTTATTTATGGAAGGGCATTTTTGTTCATCAACATTTAAGGTTACTTTAGTAATTTAATATTTTGATTTGGGGATTCCCACTTAAAGAATAGTGTGTGTGCGCGCGCGCGTGTATGTATGTGCCGCCTCTGAAGCACTTTTTTTTTGTGTGCGTGTGTATCTATACATATACATATATACATACATATGTAGAGAGATAGACTAATGAAGGTATCCATTCATGTCCTTAAGAAGAGTTGCTTTCTAATGGAAAAGTCACTATTTTTCAAGTAACACCTTTCATGAATGGACGTATCTTTTGAAAAAGAAAGACACGACAGTCAACCATGTAAGACCTCGTGAAATTTGTGAACTATCATTTAGGCCAGTTGTAAATGTGAATTTTCTTCTATTTTCCATGTGGTCATAGATGCCTATTCGAAAAATCAGGTCTTTCACTTTTCCCATGTCATCAAGTTCATTTCTTGAGTTTTTATCTGTTGTAAAATATGAATCTACTTTGATTTTCCTCATTGGTTACATGTGCTCTTTTCAATCAGTTCTTTTTTTTCCTTTTTTTCCTTTTTTTTATTACTTTTCCCAGCTTATCAAGTTCGTATGTTCTGTTGGTTCTCTGCTGTCATTGTGAATTTGATTTTTGATTTTCCATGTGTTGTGCATAGACGAATCATATGCGCAAGCTCAATTGGTACTTGAGCAGTGCCACTCAACTCAGTCGGATGAGAGTGCTAAAGGATTGGTTATGCTCGCTATGTCTACCTTATTTTCTGAAAGGTTAGTCTTTATGATGTGGTTATCCACTTACAATTTATGACCTGGAATTTGAAGTTAATAGTTTTATTCTCCTTTCCCGGTGTTTTCTTTTTGTTTTTTAAGAGGGAATTTTAGTGAAGCCATTGAGAAGCTCCAGAAAATTCAAGATTTGGGCTTGTCAACTTTAGCTGTTAGAGGTAAAACTTGTGGCACTTATGATAGAATCCACAGTTTGAAGTTCCCATTGTGACAATTAGACATATGATTGCAGTTGCCGCCTCTGAAGCACTTGCTGGGCTTTATTTAGAATCATATCAAGTAAGACTTGTTGAACTGCTGACGTCTACCTGAACTGATTTTTGGCATATCGTTTATGTATAATATAGGATCACTTAGCAAATATTTCTCCAAATGTAGGATGATTTTTCATCAGCAACTGCAGATATGTGCTTGCAACTGCTGGAAACCATAAGGCTAGAAATTGGTGGTGGTGGATCTGACATATTGGAAGCTCGTGCAAA</genome_strand>
        <mrna_strand>CGGAGCTAAGCTCTATAGAGCTGCGAGAATCGGTGGCTCCGCCGTGTCCGATTTCAGGTCACCATCAACAAGATTTTTCTCCATTAACAACAATGTTAATACTGGTTTCAAGACCAACCCAGTTGCTCTTCAAATGATCAATTATGCTCTTTCTCTAGCCCGGGCTCAAAAATCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGAATCATATGCGCAAGCTCAATTGGTACTTGAGCAGTGCCACTCAACTCAGTCGGATGAGAGTGCTAAAGGATTGGTTATGCTCGCTATGTCTACCTTATTTTCTGAAAG......................................................................................................AGGGAATTTTAGTGAAGCCATTGAGAAGCTCCAGAAAATTCAAGATTTGGGCTTGTCAACTTTAGCTGTTAGAG..........................................................................TTGCCGCCTCTGAAGCACTTGCTGGGCTTTATTTAGAATCATATCAA...................................................................................................GATGATTTTTCATCAGCAACTGCAGATATGTGCTTGCAACTGCTGGAAACCATAAGGCTAGAAATTGGTGGTGGTGGATCTGACATATTGGAAGCTCGTGCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E374261" ref_strand="+" ref_description="SGN-E374261 [TUS-33-B24]">
      <seq>cggagctaagctctatagagctgcgagaatcggtggctccgccgtgtccgatttcaggtcaccatcaacaagatttttctccattaacaacaatgttaatactggtttcaagaccaacccagttgctcttcaaatgatcaattatgctctttctctagcccgggctcaaaaatcagacgaatcatatgcgcaagctcaattggtacttgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="87097" stop="90431"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87397" g_stop="87572" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87573" i_stop="90096" i_length="2524">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90097" g_stop="90131" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="211" r_length="35" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E374261" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>211</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374261" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87397" e_stop="87572"/>
          <exon e_start="90097" e_stop="90131"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAGCTAAGCTCTATAGAGCTGCGAGAATCGGTGGCTCCGCCGTGTCCGATTTCAGGTCACCATCAACAAGATTTTTCTCCATTAACAACAATGTTAATACTGGTTTCAAGACCAACCCAGTTGCTCTTCAAATGATCAATTATGCTCTTTCTCTAGCCCGGGCTCAAAAATCAGGTATTTTTTTTCACTATACCAATCTAATGAATTGGTATCTTCAGTTTGTTTTTGTGTTGTAAACTCGAATTTGCTTTGATTTCCCCATCTGGGTCATAGGTATTTTCTCTTTTCTCGACTCGTGAAGTTCATTTCTTGAGTTTAGTTGTGTTTTTGATGGATACAAATGTTTGAGGAAGATGATTTGGTTTAAGAAAATGTCAATAATGCTCTCTTTAGGTAGTAGTTAGGACAGGGACCTGCTAGGATAAACAAAGAATTGCTATTTCTCTTTTCTTATATGTTTTGGAAATTCACTCTACTGCAATTATTCATTAGCACATTTTGTGAGTTAACTGTTGGTCTTAGTATAGTTACTAGTGTTTGGAGAAAGAATTGAATTCACTCTCATATTTGTTGAAGCCAGCTTTTGGTAAGAGTTTGGCAGAGGTAGCCCTCAATCACTTACTTATTCGGTAAATTAGCTAGCAAGAGGCCAATCCTTAGGAATTTTATTTCCAAGATAAACCATTTGAATGCTACTAAATGACAAGAATAATCTATTGGAACACGGCACATGCATCACACATAAGGGAGACGCCGGAAGACTTATAATGAATTTGTCCGTTACTCCGTTTCGGGGTCTTTCACTTTTGCCATATCTGGAGAAATACTACAAGTCTTCCGTCCTACATTCCATGGCCACGGCCATCTGATTGACTGATGCTACCAAAAGAATCTCGTACTTGCGTTATTGTTATTGATTGTTTGATTGTCTTGGACCATGAGGATCCCAGTTATGCTTTTGATTTTCATTCCCATCATAATGCTGATGATAAATCTCCTCTTGCTCTGCCATAAGAACTTGGAGTCGGTATTATGGTGAAGATAATATAACACTGTCATTCTTACTCAAAGACAGACTGAAGGCCCATAATTTGACATTGAATTATTTATTATCCAAATAAAATAAGATTTTCACAGTATATAACAATTTTTTTTGTTTCTTATCTCTAGGACTTTGATGATTTAGGTTAGAAGTATTATTATTTTTAATCAGTCATCTCTTCTATTTTTTTTAGCAGAGCTCGAATATCACTAAGACTGTTAAATATAAAGAGGTTAAACGATTCAACATATAGAATATATACTTTTAAAAAGCTACCTATTTTTTTATGATTAAGTCCCTTAGACATAGTCTATACCAAAATATTGTTATTACAAGTGCAAAAGGAAACAAATTAAAATAAAAAGAAAACATAAGCCCAACAGGGCGATACAAAGGAGAATCATAAATAGAGAAAGCTAGACAGAAAAGTTTAATTTTTCGGGGGATCACTAGACTTGCCCTCCTCGGCCTCACCCATCTGCTCCATTTGTAATCTCTCAGCAAAGAGTAGGTATCCGTCTTAAATCTTATTCAAAGAAATCTTGAATGAACCAATATTGCTTATCCATCCTGGAAAGATAAGTCTTTGAATGCAAAGAGTAGGTATCTGTCTTAAATCCTCTTCAAAGAAAGCTGAAAGTAACCAATATCGCTTATCCATCCTGGAAAGATAGTCTTCACATATGCTTCAGAGCTCATTATATTACAAGCAGCAGATGATATGTGCACAATCAGAAATCTGAACCAATTTCAAAGCGAAAGCAATGGTCAAGACAAAGCAACAACTCGACTCGGGGAGAAGTCCATTTGATAGGAATTTTATAGCTAGCAGTAATAGAACATTTAGTAGATATTTAGTTTGTGTTAACTTAGTAACTTGTATTAGTCTATATTGAGTTTTTACAACTCTTTAACTTCTACCGTTTTACACTAATGAGGAAAAGAATGATTAATGTAAGCTAGGTTCATGTACTGGTTATAAATGAAAAAAATATTTATTTATGGAAGGGCATTTTTGTTCATCAACATTTAAGGTTACTTTAGTAATTTAATATTTTGATTTGGGGATTCCCACTTAAAGAATAGTGTGTGTGCGCGCGCGCGTGTATGTATGTGCCGCCTCTGAAGCACTTTTTTTTTGTGTGCGTGTGTATCTATACATATACATATATACATACATATGTAGAGAGATAGACTAATGAAGGTATCCATTCATGTCCTTAAGAAGAGTTGCTTTCTAATGGAAAAGTCACTATTTTTCAAGTAACACCTTTCATGAATGGACGTATCTTTTGAAAAAGAAAGACACGACAGTCAACCATGTAAGACCTCGTGAAATTTGTGAACTATCATTTAGGCCAGTTGTAAATGTGAATTTTCTTCTATTTTCCATGTGGTCATAGATGCCTATTCGAAAAATCAGGTCTTTCACTTTTCCCATGTCATCAAGTTCATTTCTTGAGTTTTTATCTGTTGTAAAATATGAATCTACTTTGATTTTCCTCATTGGTTACATGTGCTCTTTTCAATCAGTTCTTTTTTTTCCTTTTTTTCCTTTTTTTTATTACTTTTCCCAGCTTATCAAGTTCGTATGTTCTGTTGGTTCTCTGCTGTCATTGTGAATTTGATTTTTGATTTTCCATGTGTTGTGCATAGACGAATCATATGCGCAAGCTCAATTGGTACTTGAG</genome_strand>
        <mrna_strand>CGGAGCTAAGCTCTATAGAGCTGCGAGAATCGGTGGCTCCGCCGTGTCCGATTTCAGGTCACCATCAACAAGATTTTTCTCCATTAACAACAATGTTAATACTGGTTTCAAGACCAACCCAGTTGCTCTTCAAATGATCAATTATGCTCTTTCTCTAGCCCGGGCTCAAAAATCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGAATCATATGCGCAAGCTCAATTGGTACTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E692049" ref_strand="+" ref_description="SGN-E692049 [LH_Ea07L07]">
      <seq>tctagaattggtggctccgccgtgtccgatttcaggccaccactaacaagatttttctccattaacaacaatgttaatactggtttcaagaccaacccagttgctcttcaaatgatcaattatgctctttctctagcccgggctcaaaaatcagatgaatcatatgcgcaagctcaattggtacttgagcagtgccactcaactcagtcggatgagagtgctaaaggattggttttgctcattatgtctaccttattttctgaaagagggaattttagtgaagccattgagaagctccagaaaattcaagatttgggcttgtcaactttagctgttagagttgccgcctctgaagcacttgctgggctttatttagaatcatatcaagatgatttttcatcagcaactgcagatatgtgcttgcaactgctggaaaccataaggctagaaattggtggtggtggatctgacatattggaagctcgtgcaaaagcattgaaagggctggttgagttggtccatggtaatgttgaatcagctgagtcattctttgaaggagctcaaggtgataaaggttgctttggcaacgttgcactatcttttggtgaattcctgcattgtaagcggaatacccagatggcgagggagttatatcaaagggcaatgcagaatgtatcacaacgtaaagattttaccgactcacagtccgtatcagcttgtaacatgaatttggaggagactttgttaggagctacatgtgctctaggacagcttgaggctcatttggggaattttgatgatgcttgagaaatacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="87120" stop="91574"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87419" g_stop="87572" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87573" i_stop="90096" i_length="2524">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90097" g_stop="90208" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="266" r_length="112" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90209" i_stop="90310" i_length="102">
            <donor d_prob="0.943" d_score="0.94"/>
            <acceptor a_prob="0.913" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90311" g_stop="90384" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="340" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90385" i_stop="90458" i_length="74">
            <donor d_prob="0.849" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90459" g_stop="90505" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="387" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90506" i_stop="90604" i_length="99">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90605" g_stop="90755" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="538" r_length="151" r_score="0.993"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="90756" i_stop="90839" i_length="84">
            <donor d_prob="0.960" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="90840" g_stop="90884" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="583" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="90885" i_stop="90953" i_length="69">
            <donor d_prob="0.819" d_score="1.00"/>
            <acceptor a_prob="0.158" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="90954" g_stop="91158" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="584" r_stop="788" r_length="205" r_score="0.976"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="91159" i_stop="91246" i_length="88">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="91247" g_stop="91274" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="789" r_stop="816" r_length="28" r_score="0.893"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E692049" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>816</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E692049" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87419" e_stop="87572"/>
          <exon e_start="90097" e_stop="90208"/>
          <exon e_start="90311" e_stop="90384"/>
          <exon e_start="90459" e_stop="90505"/>
          <exon e_start="90605" e_stop="90755"/>
          <exon e_start="90840" e_stop="90884"/>
          <exon e_start="90954" e_stop="91158"/>
          <exon e_start="91247" e_stop="91274"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGAATCGGTGGCTCCGCCGTGTCCGATTTCAGGTCACCATCAACAAGATTTTTCTCCATTAACAACAATGTTAATACTGGTTTCAAGACCAACCCAGTTGCTCTTCAAATGATCAATTATGCTCTTTCTCTAGCCCGGGCTCAAAAATCAGGTATTTTTTTTCACTATACCAATCTAATGAATTGGTATCTTCAGTTTGTTTTTGTGTTGTAAACTCGAATTTGCTTTGATTTCCCCATCTGGGTCATAGGTATTTTCTCTTTTCTCGACTCGTGAAGTTCATTTCTTGAGTTTAGTTGTGTTTTTGATGGATACAAATGTTTGAGGAAGATGATTTGGTTTAAGAAAATGTCAATAATGCTCTCTTTAGGTAGTAGTTAGGACAGGGACCTGCTAGGATAAACAAAGAATTGCTATTTCTCTTTTCTTATATGTTTTGGAAATTCACTCTACTGCAATTATTCATTAGCACATTTTGTGAGTTAACTGTTGGTCTTAGTATAGTTACTAGTGTTTGGAGAAAGAATTGAATTCACTCTCATATTTGTTGAAGCCAGCTTTTGGTAAGAGTTTGGCAGAGGTAGCCCTCAATCACTTACTTATTCGGTAAATTAGCTAGCAAGAGGCCAATCCTTAGGAATTTTATTTCCAAGATAAACCATTTGAATGCTACTAAATGACAAGAATAATCTATTGGAACACGGCACATGCATCACACATAAGGGAGACGCCGGAAGACTTATAATGAATTTGTCCGTTACTCCGTTTCGGGGTCTTTCACTTTTGCCATATCTGGAGAAATACTACAAGTCTTCCGTCCTACATTCCATGGCCACGGCCATCTGATTGACTGATGCTACCAAAAGAATCTCGTACTTGCGTTATTGTTATTGATTGTTTGATTGTCTTGGACCATGAGGATCCCAGTTATGCTTTTGATTTTCATTCCCATCATAATGCTGATGATAAATCTCCTCTTGCTCTGCCATAAGAACTTGGAGTCGGTATTATGGTGAAGATAATATAACACTGTCATTCTTACTCAAAGACAGACTGAAGGCCCATAATTTGACATTGAATTATTTATTATCCAAATAAAATAAGATTTTCACAGTATATAACAATTTTTTTTGTTTCTTATCTCTAGGACTTTGATGATTTAGGTTAGAAGTATTATTATTTTTAATCAGTCATCTCTTCTATTTTTTTTAGCAGAGCTCGAATATCACTAAGACTGTTAAATATAAAGAGGTTAAACGATTCAACATATAGAATATATACTTTTAAAAAGCTACCTATTTTTTTATGATTAAGTCCCTTAGACATAGTCTATACCAAAATATTGTTATTACAAGTGCAAAAGGAAACAAATTAAAATAAAAAGAAAACATAAGCCCAACAGGGCGATACAAAGGAGAATCATAAATAGAGAAAGCTAGACAGAAAAGTTTAATTTTTCGGGGGATCACTAGACTTGCCCTCCTCGGCCTCACCCATCTGCTCCATTTGTAATCTCTCAGCAAAGAGTAGGTATCCGTCTTAAATCTTATTCAAAGAAATCTTGAATGAACCAATATTGCTTATCCATCCTGGAAAGATAAGTCTTTGAATGCAAAGAGTAGGTATCTGTCTTAAATCCTCTTCAAAGAAAGCTGAAAGTAACCAATATCGCTTATCCATCCTGGAAAGATAGTCTTCACATATGCTTCAGAGCTCATTATATTACAAGCAGCAGATGATATGTGCACAATCAGAAATCTGAACCAATTTCAAAGCGAAAGCAATGGTCAAGACAAAGCAACAACTCGACTCGGGGAGAAGTCCATTTGATAGGAATTTTATAGCTAGCAGTAATAGAACATTTAGTAGATATTTAGTTTGTGTTAACTTAGTAACTTGTATTAGTCTATATTGAGTTTTTACAACTCTTTAACTTCTACCGTTTTACACTAATGAGGAAAAGAATGATTAATGTAAGCTAGGTTCATGTACTGGTTATAAATGAAAAAAATATTTATTTATGGAAGGGCATTTTTGTTCATCAACATTTAAGGTTACTTTAGTAATTTAATATTTTGATTTGGGGATTCCCACTTAAAGAATAGTGTGTGTGCGCGCGCGCGTGTATGTATGTGCCGCCTCTGAAGCACTTTTTTTTTGTGTGCGTGTGTATCTATACATATACATATATACATACATATGTAGAGAGATAGACTAATGAAGGTATCCATTCATGTCCTTAAGAAGAGTTGCTTTCTAATGGAAAAGTCACTATTTTTCAAGTAACACCTTTCATGAATGGACGTATCTTTTGAAAAAGAAAGACACGACAGTCAACCATGTAAGACCTCGTGAAATTTGTGAACTATCATTTAGGCCAGTTGTAAATGTGAATTTTCTTCTATTTTCCATGTGGTCATAGATGCCTATTCGAAAAATCAGGTCTTTCACTTTTCCCATGTCATCAAGTTCATTTCTTGAGTTTTTATCTGTTGTAAAATATGAATCTACTTTGATTTTCCTCATTGGTTACATGTGCTCTTTTCAATCAGTTCTTTTTTTTCCTTTTTTTCCTTTTTTTTATTACTTTTCCCAGCTTATCAAGTTCGTATGTTCTGTTGGTTCTCTGCTGTCATTGTGAATTTGATTTTTGATTTTCCATGTGTTGTGCATAGACGAATCATATGCGCAAGCTCAATTGGTACTTGAGCAGTGCCACTCAACTCAGTCGGATGAGAGTGCTAAAGGATTGGTTATGCTCGCTATGTCTACCTTATTTTCTGAAAGGTTAGTCTTTATGATGTGGTTATCCACTTACAATTTATGACCTGGAATTTGAAGTTAATAGTTTTATTCTCCTTTCCCGGTGTTTTCTTTTTGTTTTTTAAGAGGGAATTTTAGTGAAGCCATTGAGAAGCTCCAGAAAATTCAAGATTTGGGCTTGTCAACTTTAGCTGTTAGAGGTAAAACTTGTGGCACTTATGATAGAATCCACAGTTTGAAGTTCCCATTGTGACAATTAGACATATGATTGCAGTTGCCGCCTCTGAAGCACTTGCTGGGCTTTATTTAGAATCATATCAAGTAAGACTTGTTGAACTGCTGACGTCTACCTGAACTGATTTTTGGCATATCGTTTATGTATAATATAGGATCACTTAGCAAATATTTCTCCAAATGTAGGATGATTTTTCATCAGCAACTGCAGATATGTGCTTGCAACTGCTGGAAACCATAAGGCTAGAAATTGGTGGTGGTGGATCTGACATATTGGAAGCTCGTGCAAAAGCATTGAAAGGGCTGGTTGAGTTGGTCCATGGTAATGCTGAATCAGGTGAGAAATATAGTGGTCAAACTTTTCCTCTGCTTTGTGTGTTTCTTTGTTCTGAGGCTTTGAAATTGTGCATGTTCATTTCAGCTGAGTCATTCTTTGAAGGAGCTCAAGGTGATAAAGGTTGCTTTGGTAAGGATTTGCCTTGTGAGACATCACGGATGACATAGTTCTACAATATATTGATATCATGATGTATAGGCAATGTTGCACTATCTTTTGGTGAATTCCTGCATTGTAAGCGGAATTCCCAGATGGCGAGGGAGTTATATCAAAGGGCAATGCAGGATGTATCAGAACGTAAAGATTTTACCGACTCACAGTCCATATCAGCTTGTAACATGAATTTGGAGGAGACTTTGTTAGGAGCTACATGTGCTCTAGGACAGCTTGAGGCTCATTTGGGGTAAGACTTCCTTTAAATGCTTGGCTTTCCCTTGTATAAACATATACTCCAATATCTTCCCTCATGCAGACTTTTCTGGTGGCTGTAGGAATTTTGATGATGCTGAGGAAATACTA</genome_strand>
        <mrna_strand>TCTAGAATTGGTGGCTCCGCCGTGTCCGATTTCAGGCCACCACTAACAAGATTTTTCTCCATTAACAACAATGTTAATACTGGTTTCAAGACCAACCCAGTTGCTCTTCAAATGATCAATTATGCTCTTTCTCTAGCCCGGGCTCAAAAATCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAATCATATGCGCAAGCTCAATTGGTACTTGAGCAGTGCCACTCAACTCAGTCGGATGAGAGTGCTAAAGGATTGGTTTTGCTCATTATGTCTACCTTATTTTCTGAAAG......................................................................................................AGGGAATTTTAGTGAAGCCATTGAGAAGCTCCAGAAAATTCAAGATTTGGGCTTGTCAACTTTAGCTGTTAGAG..........................................................................TTGCCGCCTCTGAAGCACTTGCTGGGCTTTATTTAGAATCATATCAA...................................................................................................GATGATTTTTCATCAGCAACTGCAGATATGTGCTTGCAACTGCTGGAAACCATAAGGCTAGAAATTGGTGGTGGTGGATCTGACATATTGGAAGCTCGTGCAAAAGCATTGAAAGGGCTGGTTGAGTTGGTCCATGGTAATGTTGAATCAG....................................................................................CTGAGTCATTCTTTGAAGGAGCTCAAGGTGATAAAGGTTGCTTTG.....................................................................GCAACGTTGCACTATCTTTTGGTGAATTCCTGCATTGTAAGCGGAATACCCAGATGGCGAGGGAGTTATATCAAAGGGCAATGCAGAATGTATCACAACGTAAAGATTTTACCGACTCACAGTCCGTATCAGCTTGTAACATGAATTTGGAGGAGACTTTGTTAGGAGCTACATGTGCTCTAGGACAGCTTGAGGCTCATTTGGG........................................................................................GAATTTTGATGATGCTTGAGAAATACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E218194" ref_strand="+" ref_description="SGN-E218194 [cLEL-23-B23](-)">
      <seq>caacattcaggctgcaaaggttccacctggggtggagttgccaaaagaagtaccaaagttgagcaaaccccttttgggttttactaatactgctgagatatggaactctagagcttgtatgattggtcttattggtacatttattgtggaattgattttcaacaagggaattcttgaaatgattggtgtagaaattggaaaaggccttgatattcctctctaaatgttgtgaatctttaaatttcttcatgcgaaattcagtaatgttcgtcagtaattcattcattattcaagtaaaaaagaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="-" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="94047" stop="14353"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93746" g_stop="93624" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="154" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93623" i_stop="93535" i_length="89">
            <donor d_prob="0.534" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93534" g_stop="93395" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="294" r_length="140" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93394" i_stop="90008" i_length="3387">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90007" g_stop="89978" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="324" r_length="30" r_score="0.800"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="-" ref_id="SGN-E218194" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>293</cumulative_length_of_scored_exons>
        <coverage percentage="0.904" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E218194" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93746" e_stop="93624"/>
          <exon e_start="93534" e_stop="93395"/>
          <exon e_start="90007" e_stop="89978"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGAGTTGCCAAAAGAAGTACCAAAGTTGAGCAAACCCCTTTTGGGTTTTACTAATACTGCTGAGATATGGAACTCTAGAGCTTGTATGATTGGTCTTATTGGTACATTTATTGTGGAATTGGTAACTATACATCTTTTTTTATACCTTTGAAGGAAAATATTAATTGATTAATTACTATATCGTAATCTTTGTGTGTTGCACTTTTTCAGATTTTCAACAAGGGAATTCTTGAAATGATTGGTGTAGAAATTGGAAAAGGCCTTGATATTCCTCTCTAAATGTTGTGAATCTTTAAATTTCTTCATGCAAAATTCAGTAATGTACAACAGTAATACATTCATTATTCAAGAAAATTTCGAAATCTCTTGTGTTGTTTAGAGCATATATATCATATCTACAAAAAGTATATAGATATACTTGTGAGTTGATGAACGTAATGTGTCAAGGAAGGAAACAAACTACAGGACTCGGCTTATTCGAGTATCTATGACAGACACTTTGGCTGATGACTCTAGTGCCTCCGCGAGTGATAATCTGCGACTTGTCCAAGCTGTTTCAGCCCACTGCTTCAGTTTTTCACCTTCTGCTTTTCTGTTTTGTTGCACGATAAGCGTCTCTGCGTACCCACCTGTACAACGACAAAGCAAGTTGATCCAGGAACTAGGATGGAAGTAGTTTCATGATGTTTGTGTAAGAAGCATCAGCAGGGCGGCAGGAGAGTGAATCAATGGATGCTAACAAAACCATTTTGCAGAAGAGGGATATACAACAACAACGTACTCAATGTAATCACTTAATTGGGATTTGGGGAAGGTAGAGTATACGCAGACCTTACCCCTCCCTACCTTGAGAGGTTGTTTCCAATAGATCCTCAGCTCATGGAAAAGCATATCAAAGCAGACCGAAAAATAAATAATGAAAGTAAGGAAATCATGGGAAAAAAAGAAAGAACAGTAACTACAATAACTACTTTGATAATCGAAGTACAAGAGACAGTAGACAGTAAGAAAACCCGAAGGACAAGAAATTACAGCAGAAATACTACTACTACTAGTATCGAAGGATAAGTGAGACAACGCTTTACTACCTACTATCCTTCTACCCTAAATTGTGTCCTCCACAACCTCCTACCTAAGGTTTTATCCACAGTAAGCTGCAACTGTCCAATATTATTTTGCTCCCCCCCCCCCCCCTCACACCTACCACTGCTAAATCTAGATCAACCCTTCAAGTACAAACAAAACTTTCACTGATTACTGCAGCTAAATTCTGAATGAATTTCCACATGTTTTTCCTCTGGAGTCTATTTAAACAATTCATCCGTTTTTAAAAATATGGAACTGAAAAGCAAGTGACATCTATTACTTTGGCCAAAGCACAACGATCTGGGAAGCCATGCTAACCCCTGCGATCAATAGCTTCATCTCTTTCAGTGAAGACTCAAAACTATAATGCCTAACGGAAGCGGGGGTTGCAGAAAGAGAGATCACTTGACCCTAAAGACTCAGCCTTTGCTACTACTATAAAGATCGTTTCCAGAAAAAAGATCTTGTAATTAGGGTGAGAGGGGAATATCTTGAAGAGGTTGGACAGTTCTGTACAAGATGCGGATAAGAAGTAAATAAGATCTACTACATTTTAGAAGCAATGTATACCTCTTGCAAGGGCAAGAATATCCCTTCTAGACCGTGTCGCTACAACACCTGTAAAAAGATTTCGAATGGTTGTTATTCTATCTCTAGTTGATTTCTGCATGATGCAAACTTGGAACTTTTTCATTATTTGGCATACCTTCTACTTCCAAGGGTGGAGCTTTGAGCACTTCAATTGCTCTTCTATAGAGTCCCTGCATTATTCAATGAAACCCTTTTAAGAGATAGAGAGAGACCCTGAGAAATAAAGTATTTCATATTCGACTATTGTAACTGCAGTAGGGCCACTCATGAAATTCTTTGGATTCAGGTCCTTGAAATGAACAGTTTCTTGACATTATTTTGGATTAAGTTTCTCAGAATCTTCAGAAGAAATCCTTAGAAACAAACCCACCAACATCACCTAGGGAATAAACCCTAAATTGTGTCACCATGCATTCTTAGAAAAATTGGAAATGCATCCAAAACCTTTTCACAATGTTAAAACGAATTCCACCCAAGGCAAAATCATGTTACTGGGTTGACATTGCAATGGTAAAACAGAAAGTAAATGCATGTGGTGTATAGATAGTTGTATATGCCAATGGCTCTGAGAATAGTTTCAGACCTCTTGAATCAAAAGCGAGCTTGACTGCTCCATGGCTGCTTTATGTCGATACATGAGAGCTATGCAGGTCAAAATAATACCTACCTTTGGATGATAATTACCTGCATAAATAAATAAAAATCATTAGGATACAAATGATTTTGTCATACATGCAATAATAAATTGATGTAGCAAACCAAAGCACTCTTCTGCTTTCTTCAGTGCTGCAGTTAGTATTTCCTCAGCATCATCAAAATTCCTACAGCCACCAGAAAAGTCTGCATGAGGGAAGATATTGGAGTATATGTTTATACAAGGGAAAGCCAAGCATTTAAAGGAAGTCTTACCCCAAATGAGCCTCAAGCTGTCCTAGAGCACATGTAGCTCCTAACAAAGTCTCCTCCAAATTCATGTTACAAGCTGATATGGACTGTGAGTCGGTAAAATCTTTACGTTCTGATACATCCTGCATTGCCCTTTGATATAACTCCCTCGCCATCTGGGAATTCCGCTTACAATGCAGGAATTCACCAAAAGATAGTGCAACATTGCCTATACATCATGATATCAATATATTGTAGAACTATGTCATCCGTGATGTCTCACAAGGCAAATCCTTACCAAAGCAACCTTTATCACCTTGAGCTCCTTCAAAGAATGACTCAGCTGAAATGAACATGCACAATTTCAAAGCCTCAGAACAAAGAAACACACAAAGCAGAGGAAAAGTTTGACCACTATATTTCTCACCTGATTCAGCATTACCATGGACCAACTCAACCAGCCCTTTCAATGCTTTTGCACGAGCTTCCAATATGTCAGATCCACCACCACCAATTTCTAGCCTTATGGTTTCCAGCAGTTGCAAGCACATATCTGCAGTTGCTGATGAAAAATCATCCTACATTTGGAGAAATATTTGCTAAGTGATCCTATATTATACATAAACGATATGCCAAAAATCAGTTCAGGTAGACGTCAGCAGTTCAACAAGTCTTACTTGATATGATTCTAAATAAAGCCCAGCAAGTGCTTCAGAGGCGGCAACTGCAATCATATGTCTAATTGTCACAATGGGAACTTCAAACTGTGGATTCTATCATAAGTGCCACAAGTTTTACCTCTAACAGCTAAAGTTGACAAGCCCAAATCTTGAATTTTCTGGAGCTTCTCAATGGCTTCACTAAAATTCCCTCTTAAAAAACAAAAAGAAAACACCGGGAAAGGAGAATAAAACTATTAACTTCAAATTCCAGGTCATAAATTGTAAGTGGATAACCACATCATAAAGACTAACCTTTCAGAAAATAAGGTAGACATAGCGAGCATAACCAATCCTTTAGCACTCTCATCCGACTGAGTTGAGTGGCACTGCTCAAGTACCAATTGAGCTTGCGCATATGATTCGTCTATGCACAACACATGGAAAATCAAAAATCAAATTCACAATGACAGCAGAGAACCAACAGAACATACGAACTTGATAAGCTGGGAAAAGTAATAAAAAAAAGGAAAAAAAGGAAAAAAA</genome_strand>
        <mrna_strand>GTGGAGTTGCCAAAAGAAGTACCAAAGTTGAGCAAACCCCTTTTGGGTTTTACTAATACTGCTGAGATATGGAACTCTAGAGCTTGTATGATTGGTCTTATTGGTACATTTATTGTGGAATTG.........................................................................................ATTTTCAACAAGGGAATTCTTGAAATGATTGGTGTAGAAATTGGAAAAGGCCTTGATATTCCTCTCTAAATGTTGTGAATCTTTAAATTTCTTCATGCGAAATTCAGTAATGTTCGTCAGTAATTCATTCATTATTCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAAAGAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E203539" ref_strand="+" ref_description="SGN-E203539 [cLEC-15-D21]">
      <seq>gcagtgccactcaactcagtcggatgagagtgctaaaggattggttatgctcgctatgtctaccttattttctgaaagagggaattttagtgaagccattgagaagctccagaaaattcaagatttgggcttgtcaactttagctgttagagttgccgcctctgaagcacttgctgggctttatttagaatcatatcaagatgatttttcatcagcaactgcagatatgtgcttgcaactgctggaaaccataaggctagaaattggtggtggtggatctgacatattggaagctcgtgcaaaagcattgaaagggctggttgagttggtccatggtaatgctgaatcagctgagtcattctttgaaggagctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="89831" stop="91163"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90131" g_stop="90208" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90209" i_stop="90310" i_length="102">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.913" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90311" g_stop="90384" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="152" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90385" i_stop="90458" i_length="74">
            <donor d_prob="0.849" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90459" g_stop="90505" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="199" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90506" i_stop="90604" i_length="99">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90605" g_stop="90755" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="350" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90756" i_stop="90839" i_length="84">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90840" g_stop="90863" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="374" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E203539" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>374</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203539" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90131" e_stop="90208"/>
          <exon e_start="90311" e_stop="90384"/>
          <exon e_start="90459" e_stop="90505"/>
          <exon e_start="90605" e_stop="90755"/>
          <exon e_start="90840" e_stop="90863"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGTGCCACTCAACTCAGTCGGATGAGAGTGCTAAAGGATTGGTTATGCTCGCTATGTCTACCTTATTTTCTGAAAGGTTAGTCTTTATGATGTGGTTATCCACTTACAATTTATGACCTGGAATTTGAAGTTAATAGTTTTATTCTCCTTTCCCGGTGTTTTCTTTTTGTTTTTTAAGAGGGAATTTTAGTGAAGCCATTGAGAAGCTCCAGAAAATTCAAGATTTGGGCTTGTCAACTTTAGCTGTTAGAGGTAAAACTTGTGGCACTTATGATAGAATCCACAGTTTGAAGTTCCCATTGTGACAATTAGACATATGATTGCAGTTGCCGCCTCTGAAGCACTTGCTGGGCTTTATTTAGAATCATATCAAGTAAGACTTGTTGAACTGCTGACGTCTACCTGAACTGATTTTTGGCATATCGTTTATGTATAATATAGGATCACTTAGCAAATATTTCTCCAAATGTAGGATGATTTTTCATCAGCAACTGCAGATATGTGCTTGCAACTGCTGGAAACCATAAGGCTAGAAATTGGTGGTGGTGGATCTGACATATTGGAAGCTCGTGCAAAAGCATTGAAAGGGCTGGTTGAGTTGGTCCATGGTAATGCTGAATCAGGTGAGAAATATAGTGGTCAAACTTTTCCTCTGCTTTGTGTGTTTCTTTGTTCTGAGGCTTTGAAATTGTGCATGTTCATTTCAGCTGAGTCATTCTTTGAAGGAGCTC</genome_strand>
        <mrna_strand>GCAGTGCCACTCAACTCAGTCGGATGAGAGTGCTAAAGGATTGGTTATGCTCGCTATGTCTACCTTATTTTCTGAAAG......................................................................................................AGGGAATTTTAGTGAAGCCATTGAGAAGCTCCAGAAAATTCAAGATTTGGGCTTGTCAACTTTAGCTGTTAGAG..........................................................................TTGCCGCCTCTGAAGCACTTGCTGGGCTTTATTTAGAATCATATCAA...................................................................................................GATGATTTTTCATCAGCAACTGCAGATATGTGCTTGCAACTGCTGGAAACCATAAGGCTAGAAATTGGTGGTGGTGGATCTGACATATTGGAAGCTCGTGCAAAAGCATTGAAAGGGCTGGTTGAGTTGGTCCATGGTAATGCTGAATCAG....................................................................................CTGAGTCATTCTTTGAAGGAGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E311770" ref_strand="+" ref_description="SGN-E311770 [cLEZ-9-K6]">
      <seq>ctttagctgttagagttgccgcctctgaagcacttgctgggctttatttagaatcatatcaagatgatttttcatcagcaactgcagatatgtgcttgcaactgctggaaaccataaggctagaaattggtggtggtggatctgacatattggaagctcgtgcaaaagcattgaaagggctggttgagttggtccatggtaatgctgaatcagctgagtcattctttgaaggagctcaaggtgataaaggttgctttggcaatgttgcactatcttttggtgaattcctgcattgtaagcggaattcccagatggcgagggagttatatcaaagggcaatgcaggatgtatcagaacgtaaagattttaccgactcacagtccatatcagcttgtaacatgaatttggaggagactttgttaggagctacatgtgctctaggacagcttgaggctcattttgggaattttgatgatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="90150" stop="91562"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90370" g_stop="90384" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90385" i_stop="90458" i_length="74">
            <donor d_prob="0.849" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90459" g_stop="90505" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="62" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90506" i_stop="90604" i_length="99">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90605" g_stop="90755" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="213" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90756" i_stop="90839" i_length="84">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90840" g_stop="90884" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="258" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90885" i_stop="90953" i_length="69">
            <donor d_prob="0.819" d_score="1.00"/>
            <acceptor a_prob="0.158" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90954" g_stop="91158" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="463" r_length="205" r_score="0.995"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="91159" i_stop="91246" i_length="88">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.971" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="91247" g_stop="91262" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="479" r_length="16" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E311770" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311770" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90370" e_stop="90384"/>
          <exon e_start="90459" e_stop="90505"/>
          <exon e_start="90605" e_stop="90755"/>
          <exon e_start="90840" e_stop="90884"/>
          <exon e_start="90954" e_stop="91158"/>
          <exon e_start="91247" e_stop="91262"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTAGCTGTTAGAGGTAAAACTTGTGGCACTTATGATAGAATCCACAGTTTGAAGTTCCCATTGTGACAATTAGACATATGATTGCAGTTGCCGCCTCTGAAGCACTTGCTGGGCTTTATTTAGAATCATATCAAGTAAGACTTGTTGAACTGCTGACGTCTACCTGAACTGATTTTTGGCATATCGTTTATGTATAATATAGGATCACTTAGCAAATATTTCTCCAAATGTAGGATGATTTTTCATCAGCAACTGCAGATATGTGCTTGCAACTGCTGGAAACCATAAGGCTAGAAATTGGTGGTGGTGGATCTGACATATTGGAAGCTCGTGCAAAAGCATTGAAAGGGCTGGTTGAGTTGGTCCATGGTAATGCTGAATCAGGTGAGAAATATAGTGGTCAAACTTTTCCTCTGCTTTGTGTGTTTCTTTGTTCTGAGGCTTTGAAATTGTGCATGTTCATTTCAGCTGAGTCATTCTTTGAAGGAGCTCAAGGTGATAAAGGTTGCTTTGGTAAGGATTTGCCTTGTGAGACATCACGGATGACATAGTTCTACAATATATTGATATCATGATGTATAGGCAATGTTGCACTATCTTTTGGTGAATTCCTGCATTGTAAGCGGAATTCCCAGATGGCGAGGGAGTTATATCAAAGGGCAATGCAGGATGTATCAGAACGTAAAGATTTTACCGACTCACAGTCCATATCAGCTTGTAACATGAATTTGGAGGAGACTTTGTTAGGAGCTACATGTGCTCTAGGACAGCTTGAGGCTCATTTGGGGTAAGACTTCCTTTAAATGCTTGGCTTTCCCTTGTATAAACATATACTCCAATATCTTCCCTCATGCAGACTTTTCTGGTGGCTGTAGGAATTTTGATGATGCT</genome_strand>
        <mrna_strand>CTTTAGCTGTTAGAG..........................................................................TTGCCGCCTCTGAAGCACTTGCTGGGCTTTATTTAGAATCATATCAA...................................................................................................GATGATTTTTCATCAGCAACTGCAGATATGTGCTTGCAACTGCTGGAAACCATAAGGCTAGAAATTGGTGGTGGTGGATCTGACATATTGGAAGCTCGTGCAAAAGCATTGAAAGGGCTGGTTGAGTTGGTCCATGGTAATGCTGAATCAG....................................................................................CTGAGTCATTCTTTGAAGGAGCTCAAGGTGATAAAGGTTGCTTTG.....................................................................GCAATGTTGCACTATCTTTTGGTGAATTCCTGCATTGTAAGCGGAATTCCCAGATGGCGAGGGAGTTATATCAAAGGGCAATGCAGGATGTATCAGAACGTAAAGATTTTACCGACTCACAGTCCATATCAGCTTGTAACATGAATTTGGAGGAGACTTTGTTAGGAGCTACATGTGCTCTAGGACAGCTTGAGGCTCATTTTGG........................................................................................GAATTTTGATGATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E695889" ref_strand="+" ref_description="SGN-E695889 [LH_Ea07L07](-)">
      <seq>aggtgataaaggttgctttggcaacgttgcactatcttttggtgaattcctgcattgtaagcggaatacccagatggcgagggagttatatcaaagggcaatgcagaatgtatcagaacgtaaagattttaccgactcacagtccgtatcagcttgtaacatgaatttggaggagactttgttaggagctacatgtgctctaggacagcttgaggctcatttggggaattttgatgatgctgaggaaatactaactgcagcactgaagaaagcagaagagtgctttggtaattatcatccaaaggtaggtattattttgacctgcatagctctcatgtatcgacataaagcagccatggagcggtcaagctcgcttttgattcaagagggactctatagaagagcaattgaagtgctcaaaactccacccttggaagtagaaggtgttggaacgacacggtctagaagggatattcttgcccttgcaagaggtgggtacgcagagacgcttatcgtgcaacaaaacagaaaagcagaaggtgaaaaaatgaagcagtgggctgaaacagcttggacaaatcgcagattatcactcgcggaggcactagagtcatccgagtcatcagccaaagtgtctgtcatagatactcgaataagccgagtcctgtagtttgtttccttccttgacacattacgttcatcaactcacaagtatatctatatactttttgtagatatgatatatgctctaaacagtagaagagatttcgaaatattgttgaataataaatgtattactgttgtacataaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="90643" stop="103899"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90865" g_stop="90884" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90885" i_stop="90953" i_length="69">
            <donor d_prob="0.819" d_score="0.00"/>
            <acceptor a_prob="0.158" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90954" g_stop="91158" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="225" r_length="205" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91159" i_stop="91246" i_length="88">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91247" g_stop="91308" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="287" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91309" i_stop="91383" i_length="75">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91384" g_stop="91484" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="388" r_length="101" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="91485" i_stop="91897" i_length="413">
            <donor d_prob="0.909" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="91898" g_stop="91952" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="443" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="91953" i_stop="92040" i_length="88">
            <donor d_prob="0.631" d_score="0.98"/>
            <acceptor a_prob="0.979" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="92041" g_stop="92088" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="491" r_length="48" r_score="0.958"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="92089" i_stop="93115" i_length="1027">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="93116" g_stop="93423" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="806" r_length="315" r_score="0.909"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="93424" i_stop="94996" i_length="1573">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="94997" g_stop="95014" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="807" r_stop="824" r_length="18" r_score="0.889"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E695889" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>817</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E695889" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90865" e_stop="90884"/>
          <exon e_start="90954" e_stop="91158"/>
          <exon e_start="91247" e_stop="91308"/>
          <exon e_start="91384" e_stop="91484"/>
          <exon e_start="91898" e_stop="91952"/>
          <exon e_start="92041" e_stop="92088"/>
          <exon e_start="93116" e_stop="93423"/>
          <exon e_start="94997" e_stop="95014"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTGATAAAGGTTGCTTTGGTAAGGATTTGCCTTGTGAGACATCACGGATGACATAGTTCTACAATATATTGATATCATGATGTATAGGCAATGTTGCACTATCTTTTGGTGAATTCCTGCATTGTAAGCGGAATTCCCAGATGGCGAGGGAGTTATATCAAAGGGCAATGCAGGATGTATCAGAACGTAAAGATTTTACCGACTCACAGTCCATATCAGCTTGTAACATGAATTTGGAGGAGACTTTGTTAGGAGCTACATGTGCTCTAGGACAGCTTGAGGCTCATTTGGGGTAAGACTTCCTTTAAATGCTTGGCTTTCCCTTGTATAAACATATACTCCAATATCTTCCCTCATGCAGACTTTTCTGGTGGCTGTAGGAATTTTGATGATGCTGAGGAAATACTAACTGCAGCACTGAAGAAAGCAGAAGAGTGCTTTGGTTTGCTACATCAATTTATTATTGCATGTATGACAAAATCATTTGTATCCTAATGATTTTTATTTATTTATGCAGGTAATTATCATCCAAAGGTAGGTATTATTTTGACCTGCATAGCTCTCATGTATCGACATAAAGCAGCCATGGAGCAGTCAAGCTCGCTTTTGATTCAAGAGGTCTGAAACTATTCTCAGAGCCATTGGCATATACAACTATCTATACACCACATGCATTTACTTTCTGTTTTACCATTGCAATGTCAACCCAGTAACATGATTTTGCCTTGGGTGGAATTCGTTTTAACATTGTGAAAAGGTTTTGGATGCATTTCCAATTTTTCTAAGAATGCATGGTGACACAATTTAGGGTTTATTCCCTAGGTGATGTTGGTGGGTTTGTTTCTAAGGATTTCTTCTGAAGATTCTGAGAAACTTAATCCAAAATAATGTCAAGAAACTGTTCATTTCAAGGACCTGAATCCAAAGAATTTCATGAGTGGCCCTACTGCAGTTACAATAGTCGAATATGAAATACTTTATTTCTCAGGGTCTCTCTCTATCTCTTAAAAGGGTTTCATTGAATAATGCAGGGACTCTATAGAAGAGCAATTGAAGTGCTCAAAGCTCCACCCTTGGAAGTAGAAGGTATGCCAAATAATGAAAAAGTTCCAAGTTTGCATCATGCAGAAATCAACTAGAGATAGAATAACAACCATTCGAAATCTTTTTACAGGTGTTGTAGCGACACGGTCTAGAAGGGATATTCTTGCCCTTGCAAGAGGTATACATTGCTTCTAAAATGTAGTAGATCTTATTTACTTCTTATCCGCATCTTGTACAGAACTGTCCAACCTCTTCAAGATATTCCCCTCTCACCCTAATTACAAGATCTTTTTTCTGGAAACGATCTTTATAGTAGTAGCAAAGGCTGAGTCTTTAGGGTCAAGTGATCTCTCTTTCTGCAACCCCCGCTTCCGTTAGGCATTATAGTTTTGAGTCTTCACTGAAAGAGATGAAGCTATTGATCGCAGGGGTTAGCATGGCTTCCCAGATCGTTGTGCTTTGGCCAAAGTAATAGATGTCACTTGCTTTTCAGTTCCATATTTTTAAAAACGGATGAATTGTTTAAATAGACTCCAGAGGAAAAACATGTGGAAATTCATTCAGAATTTAGCTGCAGTAATCAGTGAAAGTTTTGTTTGTACTTGAAGGGTTGATCTAGATTTAGCAGTGGTAGGTGTGAGGGGGGGGGGGGGGAGCAAAATAATATTGGACAGTTGCAGCTTACTGTGGATAAAACCTTAGGTAGGAGGTTGTGGAGGACACAATTTAGGGTAGAAGGATAGTAGGTAGTAAAGCGTTGTCTCACTTATCCTTCGATACTAGTAGTAGTAGTATTTCTGCTGTAATTTCTTGTCCTTCGGGTTTTCTTACTGTCTACTGTCTCTTGTACTTCGATTATCAAAGTAGTTATTGTAGTTACTGTTCTTTCTTTTTTTCCCATGATTTCCTTACTTTCATTATTTATTTTTCGGTCTGCTTTGATATGCTTTTCCATGAGCTGAGGATCTATTGGAAACAACCTCTCAAGGTAGGGAGGGGTAAGGTCTGCGTATACTCTACCTTCCCCAAATCCCAATTAAGTGATTACATTGAGTACGTTGTTGTTGTATATCCCTCTTCTGCAAAATGGTTTTGTTAGCATCCATTGATTCACTCTCCTGCCGCCCTGCTGATGCTTCTTACACAAACATCATGAAACTACTTCCATCCTAGTTCCTGGATCAACTTGCTTTGTCGTTGTACAGGTGGGTACGCAGAGACGCTTATCGTGCAACAAAACAGAAAAGCAGAAGGTGAAAAACTGAAGCAGTGGGCTGAAACAGCTTGGACAAGTCGCAGATTATCACTCGCGGAGGCAC-----T-A---GAGTCATCAGCCAAAGTGTCTGTCATAGATACTCGAATAAGCCGAGTCCTGTAGTTTGTTTCCTTCCTTGACACATTACGTTCATCAACTCACAAGTATATCTATATACTTTTTGTAGATATGATATATATGCTCTAAACAACACAAGAGATTTCGAAATTTTCTTGAATAATGAATGTATTACTGTTGTACATTACTGAATTTTGCATGAAGAAATTTAAAGATTCACAACATTTAGAGAGGAATATCAAGGCCTTTTCCAATTTCTACACCAATCATTTCAAGAATTCCCTTGTTGAAAATCTGAAAAAGTGCAACACACAAAGATTACGATATAGTAATTAATCAATTAATATTTTCCTTCAAAGGTATAAAAAAAGATGTATAGTTACCAATTCCACAATAAATGTACCAATAAGACCAATCATACAAGCTCTAGAGTTCCATATCTCAGCAGTATTAGTAAAACCCAAAAGGGGTTTGCTCAACTTTGGTACTTCTTTTGGCAACTCCACCTACACAATAAAAGTTTCATTTTACAAAAACATAGTAAATATAAATGTGAAAACAAGTTTTTGGTGTTCTTCGAATTTCAAATACAATTTCACGTTATATTTGAAAATCTTATAGTCAAACGTTGATTTTCAAATAAAGTGAATTTTCATGGTCTAACGAATCCTAAGATGTCACCTACCTAGTTTCTTCCAACTCCACCTTACTATAACGGTGAAATCCAAAATTTCATTAAGGGGATTAAAAATAAAATCTTATGCCAATAGGATTTAACAACTTATGATTTATGTGTGTACCCTAAAAGAGTCATTTCCCCTTATTTATATAATAATACTCCTTACGTCTTTATTTATGTTGCATAATTCAGATTTTCAGACTAAATTGACTTTTAATCGTAAATTAGATGAAATTTTTTATGTTTTTTTCAAAATATAAAAAAATAACATGGACCCGGCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGTACGGACAAAAGATACATTAAAATAGAAATACAGAATTAGTGCATATTTTTGAAACTCTTATTGAAGAGTTTCTTCATCAACTTATGTTGAATATGAATATATGATCCTATAATAATATGATGGGATTCCCCATCCCATAATAATATAAAGATTAACATTGAAATAAAATGAATAATCTTGAGTTGGGGTCCATGGTACAAAAATTATGAATTTATAAAGGTAAAATTTGAGAAATATCATAAAGTGTTTTAAATATTGTAATTAAATAATTGAGGGTTATGAATATTAAAATTTAATATTAAAAGAGTTAATGATAGTATTAAAAGTAGAAATTCAATAGGTATAAGTTATAAATATGAAATTGTAAAAACAAATAAAATAAAAATAAAAATGAATAAATGAGATGAAAGAAATAATTTTATATTATATATAACTATAACTTTTATAGATTGAATAAGTAATAAAATTCTTTAACAAAATCATAAAGTGTTTTTAAATTGAAATAACAATAAATATTGCCATAAAGTTTAAAGATAGCAATTCAACAAATAATTCTTTATTACAATTTAAATTTGATGTTAGTGGGCTGAGTTTTAAATGGGTTGGACTGCATTTTTTGGGCTATAACGGGCAAGTAATTACTTATAGTATTTAGTATGATGTTTTTACTTATTTATGTATTTGTTTTGAGATAAAAATAAAAAATAAA</genome_strand>
        <mrna_strand>AGGTGATAAAGGTTGCTTTG.....................................................................GCAACGTTGCACTATCTTTTGGTGAATTCCTGCATTGTAAGCGGAATACCCAGATGGCGAGGGAGTTATATCAAAGGGCAATGCAGAATGTATCAGAACGTAAAGATTTTACCGACTCACAGTCCGTATCAGCTTGTAACATGAATTTGGAGGAGACTTTGTTAGGAGCTACATGTGCTCTAGGACAGCTTGAGGCTCATTTGGG........................................................................................GAATTTTGATGATGCTGAGGAAATACTAACTGCAGCACTGAAGAAAGCAGAAGAGTGCTTTG...........................................................................GTAATTATCATCCAAAGGTAGGTATTATTTTGACCTGCATAGCTCTCATGTATCGACATAAAGCAGCCATGGAGCGGTCAAGCTCGCTTTTGATTCAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................GGACTCTATAGAAGAGCAATTGAAGTGCTCAAAACTCCACCCTTGGAAGTAGAAG........................................................................................GTGTTGGAACGACACGGTCTAGAAGGGATATTCTTGCCCTTGCAAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGTACGCAGAGACGCTTATCGTGCAACAAAACAGAAAAGCAGAAGGTGAAAAAATGAAGCAGTGGGCTGAAACAGCTTGGACAAATCGCAGATTATCACTCGCGGAGGCACTAGAGTCATCCGAGTCATCAGCCAAAGTGTCTGTCATAGATACTCGAATAAGCCGAGTCCTGTAGTTTGTTTCCTTCCTTGACACATTACGTTCATCAACTCACAAGTATATCTATATACTTTTTGTAGATATG--ATATATGCTCTAAACAGTAGAAGAGATTTCGAAATATTGTTGAATAATAAATGTATTACTGTTGTAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E374260" ref_strand="+" ref_description="SGN-E374260 [TUS-33-B24](-)">
      <seq>tcaaagggcaatgcaggatgtatcagaacgtaaagattttaccgactcacagtccatatcagcttgtaacatgaatttggaggagactttgttaggagctacatgtgctctaggacagcttgaggctcatttggggaattttgatgatgctgaggaaatactaactgcagcactgaagaaagcagaagagtgctttggtaattatcatccaaaggtaggtattattttgacctgcatagctctcatgtatcgacataaagcagccatggagcagtcaagctcgcttttgattcaagagggactctatagaagagcaattgaagtgctcaaagctccacccttggaagtagaaggtgttgtagcgacacggtctagaagggatattcttgcccttgcaagaggtgggtacgcagagacgcttatcgtgcaacaaaacagaaaagcagaaggtgaaaaactgaagcagtgggctgaaacagcttggacaagtcgcagattatcactcgcggaggcactagagtcatcagccaaagtgtctgtcatagatactcgaataagccgagtcctgtagtttgtttccttccttgacacattacgttcatcaactcacaagtatatctatatactttttgtagatatgatatatatgctctaaacaacacaagagatttcgaaattttcttgaataatgaatgtattactgttgtacattaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="90724" stop="103898"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91024" g_stop="91158" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91159" i_stop="91246" i_length="88">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91247" g_stop="91308" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="197" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91309" i_stop="91383" i_length="75">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91384" g_stop="91484" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="298" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91485" i_stop="91897" i_length="413">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91898" g_stop="91952" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="353" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="91953" i_stop="92040" i_length="88">
            <donor d_prob="0.631" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="92041" g_stop="92088" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="401" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="92089" i_stop="93115" i_length="1027">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="93116" g_stop="93427" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="713" r_length="312" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="93428" i_stop="94996" i_length="1569">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="94997" g_stop="95010" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="714" r_stop="727" r_length="14" r_score="0.857"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E374260" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374260" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91024" e_stop="91158"/>
          <exon e_start="91247" e_stop="91308"/>
          <exon e_start="91384" e_stop="91484"/>
          <exon e_start="91898" e_stop="91952"/>
          <exon e_start="92041" e_stop="92088"/>
          <exon e_start="93116" e_stop="93427"/>
          <exon e_start="94997" e_stop="95010"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAGGGCAATGCAGGATGTATCAGAACGTAAAGATTTTACCGACTCACAGTCCATATCAGCTTGTAACATGAATTTGGAGGAGACTTTGTTAGGAGCTACATGTGCTCTAGGACAGCTTGAGGCTCATTTGGGGTAAGACTTCCTTTAAATGCTTGGCTTTCCCTTGTATAAACATATACTCCAATATCTTCCCTCATGCAGACTTTTCTGGTGGCTGTAGGAATTTTGATGATGCTGAGGAAATACTAACTGCAGCACTGAAGAAAGCAGAAGAGTGCTTTGGTTTGCTACATCAATTTATTATTGCATGTATGACAAAATCATTTGTATCCTAATGATTTTTATTTATTTATGCAGGTAATTATCATCCAAAGGTAGGTATTATTTTGACCTGCATAGCTCTCATGTATCGACATAAAGCAGCCATGGAGCAGTCAAGCTCGCTTTTGATTCAAGAGGTCTGAAACTATTCTCAGAGCCATTGGCATATACAACTATCTATACACCACATGCATTTACTTTCTGTTTTACCATTGCAATGTCAACCCAGTAACATGATTTTGCCTTGGGTGGAATTCGTTTTAACATTGTGAAAAGGTTTTGGATGCATTTCCAATTTTTCTAAGAATGCATGGTGACACAATTTAGGGTTTATTCCCTAGGTGATGTTGGTGGGTTTGTTTCTAAGGATTTCTTCTGAAGATTCTGAGAAACTTAATCCAAAATAATGTCAAGAAACTGTTCATTTCAAGGACCTGAATCCAAAGAATTTCATGAGTGGCCCTACTGCAGTTACAATAGTCGAATATGAAATACTTTATTTCTCAGGGTCTCTCTCTATCTCTTAAAAGGGTTTCATTGAATAATGCAGGGACTCTATAGAAGAGCAATTGAAGTGCTCAAAGCTCCACCCTTGGAAGTAGAAGGTATGCCAAATAATGAAAAAGTTCCAAGTTTGCATCATGCAGAAATCAACTAGAGATAGAATAACAACCATTCGAAATCTTTTTACAGGTGTTGTAGCGACACGGTCTAGAAGGGATATTCTTGCCCTTGCAAGAGGTATACATTGCTTCTAAAATGTAGTAGATCTTATTTACTTCTTATCCGCATCTTGTACAGAACTGTCCAACCTCTTCAAGATATTCCCCTCTCACCCTAATTACAAGATCTTTTTTCTGGAAACGATCTTTATAGTAGTAGCAAAGGCTGAGTCTTTAGGGTCAAGTGATCTCTCTTTCTGCAACCCCCGCTTCCGTTAGGCATTATAGTTTTGAGTCTTCACTGAAAGAGATGAAGCTATTGATCGCAGGGGTTAGCATGGCTTCCCAGATCGTTGTGCTTTGGCCAAAGTAATAGATGTCACTTGCTTTTCAGTTCCATATTTTTAAAAACGGATGAATTGTTTAAATAGACTCCAGAGGAAAAACATGTGGAAATTCATTCAGAATTTAGCTGCAGTAATCAGTGAAAGTTTTGTTTGTACTTGAAGGGTTGATCTAGATTTAGCAGTGGTAGGTGTGAGGGGGGGGGGGGGGAGCAAAATAATATTGGACAGTTGCAGCTTACTGTGGATAAAACCTTAGGTAGGAGGTTGTGGAGGACACAATTTAGGGTAGAAGGATAGTAGGTAGTAAAGCGTTGTCTCACTTATCCTTCGATACTAGTAGTAGTAGTATTTCTGCTGTAATTTCTTGTCCTTCGGGTTTTCTTACTGTCTACTGTCTCTTGTACTTCGATTATCAAAGTAGTTATTGTAGTTACTGTTCTTTCTTTTTTTCCCATGATTTCCTTACTTTCATTATTTATTTTTCGGTCTGCTTTGATATGCTTTTCCATGAGCTGAGGATCTATTGGAAACAACCTCTCAAGGTAGGGAGGGGTAAGGTCTGCGTATACTCTACCTTCCCCAAATCCCAATTAAGTGATTACATTGAGTACGTTGTTGTTGTATATCCCTCTTCTGCAAAATGGTTTTGTTAGCATCCATTGATTCACTCTCCTGCCGCCCTGCTGATGCTTCTTACACAAACATCATGAAACTACTTCCATCCTAGTTCCTGGATCAACTTGCTTTGTCGTTGTACAGGTGGGTACGCAGAGACGCTTATCGTGCAACAAAACAGAAAAGCAGAAGGTGAAAAACTGAAGCAGTGGGCTGAAACAGCTTGGACAAGTCGCAGATTATCACTCGCGGAGGCACTAGAGTCATCAGCCAAAGTGTCTGTCATAGATACTCGAATAAGCCGAGTCCTGTAGTTTGTTTCCTTCCTTGACACATTACGTTCATCAACTCACAAGTATATCTATATACTTTTTGTAGATATGATATATATGCTCTAAACAACACAAGAGATTTCGAAATTTTCTTGAATAATGAATGTATTACTGTTGTACATTACTGAATTTTGCATGAAGAAATTTAAAGATTCACAACATTTAGAGAGGAATATCAAGGCCTTTTCCAATTTCTACACCAATCATTTCAAGAATTCCCTTGTTGAAAATCTGAAAAAGTGCAACACACAAAGATTACGATATAGTAATTAATCAATTAATATTTTCCTTCAAAGGTATAAAAAAAGATGTATAGTTACCAATTCCACAATAAATGTACCAATAAGACCAATCATACAAGCTCTAGAGTTCCATATCTCAGCAGTATTAGTAAAACCCAAAAGGGGTTTGCTCAACTTTGGTACTTCTTTTGGCAACTCCACCTACACAATAAAAGTTTCATTTTACAAAAACATAGTAAATATAAATGTGAAAACAAGTTTTTGGTGTTCTTCGAATTTCAAATACAATTTCACGTTATATTTGAAAATCTTATAGTCAAACGTTGATTTTCAAATAAAGTGAATTTTCATGGTCTAACGAATCCTAAGATGTCACCTACCTAGTTTCTTCCAACTCCACCTTACTATAACGGTGAAATCCAAAATTTCATTAAGGGGATTAAAAATAAAATCTTATGCCAATAGGATTTAACAACTTATGATTTATGTGTGTACCCTAAAAGAGTCATTTCCCCTTATTTATATAATAATACTCCTTACGTCTTTATTTATGTTGCATAATTCAGATTTTCAGACTAAATTGACTTTTAATCGTAAATTAGATGAAATTTTTTATGTTTTTTTCAAAATATAAAAAAATAACATGGACCCGGCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGTACGGACAAAAGATACATTAAAATAGAAATACAGAATTAGTGCATATTTTTGAAACTCTTATTGAAGAGTTTCTTCATCAACTTATGTTGAATATGAATATATGATCCTATAATAATATGATGGGATTCCCCATCCCATAATAATATAAAGATTAACATTGAAATAAAATGAATAATCTTGAGTTGGGGTCCATGGTACAAAAATTATGAATTTATAAAGGTAAAATTTGAGAAATATCATAAAGTGTTTTAAATATTGTAATTAAATAATTGAGGGTTATGAATATTAAAATTTAATATTAAAAGAGTTAATGATAGTATTAAAAGTAGAAATTCAATAGGTATAAGTTATAAATATGAAATTGTAAAAACAAATAAAATAAAAATAAAAATGAATAAATGAGATGAAAGAAATAATTTTATATTATATATAACTATAACTTTTATAGATTGAATAAGTAATAAAATTCTTTAACAAAATCATAAAGTGTTTTTAAATTGAAATAACAATAAATATTGCCATAAAGTTTAAAGATAGCAATTCAACAAATAATTCTTTATTACAATTTAAATTTGATGTTAGTGGGCTGAGTTTTAAATGGGTTGGACTGCATTTTTTGGGCTATAACGGGCAAGTAATTACTTATAGTATTTAGTATGATGTTTTTACTTATTTATGTATTTGTTTTGAGATAAAAATAAAAAA</genome_strand>
        <mrna_strand>TCAAAGGGCAATGCAGGATGTATCAGAACGTAAAGATTTTACCGACTCACAGTCCATATCAGCTTGTAACATGAATTTGGAGGAGACTTTGTTAGGAGCTACATGTGCTCTAGGACAGCTTGAGGCTCATTTGGG........................................................................................GAATTTTGATGATGCTGAGGAAATACTAACTGCAGCACTGAAGAAAGCAGAAGAGTGCTTTG...........................................................................GTAATTATCATCCAAAGGTAGGTATTATTTTGACCTGCATAGCTCTCATGTATCGACATAAAGCAGCCATGGAGCAGTCAAGCTCGCTTTTGATTCAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................GGACTCTATAGAAGAGCAATTGAAGTGCTCAAAGCTCCACCCTTGGAAGTAGAAG........................................................................................GTGTTGTAGCGACACGGTCTAGAAGGGATATTCTTGCCCTTGCAAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGTACGCAGAGACGCTTATCGTGCAACAAAACAGAAAAGCAGAAGGTGAAAAACTGAAGCAGTGGGCTGAAACAGCTTGGACAAGTCGCAGATTATCACTCGCGGAGGCACTAGAGTCATCAGCCAAAGTGTCTGTCATAGATACTCGAATAAGCCGAGTCCTGTAGTTTGTTTCCTTCCTTGACACATTACGTTCATCAACTCACAAGTATATCTATATACTTTTTGTAGATATGATATATATGCTCTAAACAACACAAGAGATTTCGAAATTTTCTTGAATAATGAATGTATTACTGTTGTACATTA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E371862" ref_strand="+" ref_description="SGN-E371862 [TUS-30-O15](-)">
      <seq>caaaacagaaaagcagaaggtgaaaaactgaagcagtgggctgaaacagcttggacaagtcgcagattatcactcgcggaggcactagagtcatcagccaaagtgtctgtcatagatactcgaataagccgagtcctgtagtttgtttccttccttgacacattacgttcatcaactcacaagtatatctatatactttttgtagatatgatatatatgctctaaacaacacaagagatttcgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="92845" stop="93690"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93145" g_stop="93389" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="245" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93390" i_stop="93444" i_length="55">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.831" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93445" g_stop="93452" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="253" r_length="8" r_score="0.625"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E371862" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>253</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371862" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93145" e_stop="93389"/>
          <exon e_start="93445" e_stop="93452"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAACAGAAAAGCAGAAGGTGAAAAACTGAAGCAGTGGGCTGAAACAGCTTGGACAAGTCGCAGATTATCACTCGCGGAGGCACTAGAGTCATCAGCCAAAGTGTCTGTCATAGATACTCGAATAAGCCGAGTCCTGTAGTTTGTTTCCTTCCTTGACACATTACGTTCATCAACTCACAAGTATATCTATATACTTTTTGTAGATATGATATATATGCTCTAAACAACACAAGAGATTTCGAAATTTTCTTGAATAATGAATGTATTACTGTTGTACATTACTGAATTTTGCATGAAGAAATTTAA</genome_strand>
        <mrna_strand>CAAAACAGAAAAGCAGAAGGTGAAAAACTGAAGCAGTGGGCTGAAACAGCTTGGACAAGTCGCAGATTATCACTCGCGGAGGCACTAGAGTCATCAGCCAAAGTGTCTGTCATAGATACTCGAATAAGCCGAGTCCTGTAGTTTGTTTCCTTCCTTGACACATTACGTTCATCAACTCACAAGTATATCTATATACTTTTTGTAGATATGATATATATGCTCTAAACAACACAAGAGATTTCGAA.......................................................AAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E371863" ref_strand="+" ref_description="SGN-E371863 [TUS-30-O15]">
      <seq>aaaacagaaaagcagaaggtgaaaaactgaagcagtgggctgaaacagcttggacaagtcgcagattatcactcgcggaggcactagagtcatcagccaaagtgtctgtcatagatactcgaataagccgagtcctgtagtttgtttccttccttgacacattacgttcatcaactcacaagtatatctatatactttttgtagatatgatatatatgctctaaacaacacaagagatttcgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="92846" stop="93690"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93146" g_stop="93389" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="244" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93390" i_stop="93444" i_length="55">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.831" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93445" g_stop="93453" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="253" r_length="9" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E371863" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>253</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93146" e_stop="93389"/>
          <exon e_start="93445" e_stop="93453"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACAGAAAAGCAGAAGGTGAAAAACTGAAGCAGTGGGCTGAAACAGCTTGGACAAGTCGCAGATTATCACTCGCGGAGGCACTAGAGTCATCAGCCAAAGTGTCTGTCATAGATACTCGAATAAGCCGAGTCCTGTAGTTTGTTTCCTTCCTTGACACATTACGTTCATCAACTCACAAGTATATCTATATACTTTTTGTAGATATGATATATATGCTCTAAACAACACAAGAGATTTCGAAATTTTCTTGAATAATGAATGTATTACTGTTGTACATTACTGAATTTTGCATGAAGAAATTTAAA</genome_strand>
        <mrna_strand>AAAACAGAAAAGCAGAAGGTGAAAAACTGAAGCAGTGGGCTGAAACAGCTTGGACAAGTCGCAGATTATCACTCGCGGAGGCACTAGAGTCATCAGCCAAAGTGTCTGTCATAGATACTCGAATAAGCCGAGTCCTGTAGTTTGTTTCCTTCCTTGACACATTACGTTCATCAACTCACAAGTATATCTATATACTTTTTGTAGATATGATATATATGCTCTAAACAACACAAGAGATTTCGAA.......................................................AAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E287187" ref_strand="+" ref_description="SGN-E287187 [cLES-6-P1]">
      <seq>aaaacagaaaagcagaaggtgaaaaactgatgcagtgggctgaaacagctgggacaagtcgcagattatcactcgcggaggcactagagtcatcagccaaagtgtctgtcatagatactcgaataagccgagtcctgtaggttgtttacttgcttgacacattacgttcatcaactcacaagtatatctatatactctatggagatatgatatatatgctctaaacatcacaagagatttcgaatgaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="+" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="92846" stop="93689"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93146" g_stop="93389" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="244" r_length="244" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="+" ref_id="SGN-E287187" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>244</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287187" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93146" e_stop="93389"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACAGAAAAGCAGAAGGTGAAAAACTGAAGCAGTGGGCTGAAACAGCTTGGACAAGTCGCAGATTATCACTCGCGGAGGCACTAGAGTCATCAGCCAAAGTGTCTGTCATAGATACTCGAATAAGCCGAGTCCTGTAGTTTGTTTCCTTCCTTGACACATTACGTTCATCAACTCACAAGTATATCTATATACTTTTTGTAGATATGATATATATGCTCTAAACAACACAAGAGATTTCGAA</genome_strand>
        <mrna_strand>AAAACAGAAAAGCAGAAGGTGAAAAACTGATGCAGTGGGCTGAAACAGCTGGGACAAGTCGCAGATTATCACTCGCGGAGGCACTAGAGTCATCAGCCAAAGTGTCTGTCATAGATACTCGAATAAGCCGAGTCCTGTAGGTTGTTTACTTGCTTGACACATTACGTTCATCAACTCACAAGTATATCTATATACTCTATGGAGATATGATATATATGCTCTAAACATCACAAGAGATTTCGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E609560" ref_strand="+" ref_description="SGN-E609560 [25571]">
      <seq>cttgtactcttttggagtgaaataaatattggttggttgtgtctgaggagtaggacaaaagaaaatataagtttgccaaacctcgttaattcctggtgttctttttattgttgtctcatctactatttattagctacctttagatataacagttgtgatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0317H24-PvB4U/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0317H24.1" temp_strand="-" temp_description="C09HBa0317H24.1  AC234696.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0317H24 upload_account_name:spain (1 - 113452)">
        <position start="96349" stop="95591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96049" g_stop="95889" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0317H24.1" gen_strand="-" ref_id="SGN-E609560" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>161</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0317H24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E609560" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96049" e_stop="95889"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGTACTCTTTTGGAGTGAAATAAATATTGGTTGGTTGTGTCCGAGGAGTAGG-CAAAAGAAAACAAAAGTTTGCCGAACCTCGTTAATTCCTGGTGTTCTTTCTCTTATTGTCTCATTTACTATTTATTAGCTACCTTTAGATATAATAGTTGTGATTCC</genome_strand>
        <mrna_strand>CTTGTACTCTTTTGGAGTGAAATAAATATTGGTTGGTTGTGTCTGAGGAGTAGGACAAAAGAAAATATAAGTTTGCCAAACCTCGTTAATTCCTGGTGTTCTTTTTATTGTTGTCTCATCTACTATTTATTAGCTACCTTTAGATATAACAGTTGTGATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>170</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="4941" PGL_stop="4381"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4941" e_stop="4381"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.960"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.960">
            <gDNA_exon_boundary e_start="4941" e_stop="4381" e_length="561"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4941" stop="4393"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396058" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4941" stop="4486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396070" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4940" stop="4381"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231589" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4940" stop="4394"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241959" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4940" stop="4467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236652" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCGATTCTCCTTCTCTCTCTTTCTGTTCTTTTTCTTTTTCTTATTCAAACCCTCTTTTTTTTATCCTAATTAGCATATAATTAAGAATAAAAGATGGCAATAATAACCCACTAATTTACTCAAGGTTACTTCTTTTAACCCCCAAGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAAAAATCTGACCCAGACTGGGATTACGCAACCTGTGACGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACGGTCCGTCCTACCATTCCGTTACGAAGTTCAGAGAGTCAATTTTCAGTACCCAATTTTAGAATTTCTAAGTGTTTTGAAACGAGACCCCTCGACGGTCCGTCGTGCTCATGACGGTCCGTCGTGAGTTCCGTCGTCTCAGCCTGTTTTTCCAGAAATAAAATCTACTGCTCAAAACGACTAAACAGGTCGTTACATTA</gDNA_template>
            <first_frame> I  D  S  P  S  L  S  F  C  S  F  S  F  S  Y  S  N  P  L  F  F  I  L  I  S  I  *  L  R  I  K  D  G  N  N  N  P  L  I  Y  S  R  L  L  L  L  T  P  K  *  L  D  L  L  T  *  T  H  *  L  Y  N  *  S  R  N  S  P  K  R  P  L  K  R  V  K  K  S  D  P  D  W  D  Y  A  T  C  D  G  P  S  C  L  R  R  S  V  L  Q  V  V  A  R  F  R  D  S  I  S  T  K  E  S  V  T  V  R  H  A  R  D  G  P  S  Y  H  S  V  T  K  F  R  E  S  I  F  S  T  Q  F  *  N  F  *  V  F  *  N  E  T  P  R  R  S  V  V  L  M  T  V  R  R  E  F  R  R  L  S  L  F  F  Q  K  *  N  L  L  L  K  T  T  K  Q  V  V  T  L </first_frame>
            <second_frame>  S  I  L  L  L  S  L  S  V  L  F  L  F  L  I  Q  T  L  F  F  L  S  *  L  A  Y  N  *  E  *  K  M  A  I  I  T  H  *  F  T  Q  G  Y  F  F  *  P  P  S  N  *  T  Y  *  H  K  P  T  N  F  I  I  K  V  G  I  V  Q  N  V  P  *  N  V  *  K  N  L  T  Q  T  G  I  T  Q  P  V  T  A  R  R  A  C  D  G  P  S  C  R  S  S  Q  G  S  E  T  Q  F  P  P  K  S  L  *  R  S  V  T  P  V  T  V  R  P  T  I  P  L  R  S  S  E  S  Q  F  S  V  P  N  F  R  I  S  K  C  F  E  T  R  P  L  D  G  P  S  C  S  *  R  S  V  V  S  S  V  V  S  A  C  F  S  R  N  K  I  Y  C  S  K  R  L  N  R  S  L  H   </second_frame>
            <third_frame>   R  F  S  F  S  L  F  L  F  F  F  F  F  L  F  K  P  S  F  F  Y  P  N  *  H  I  I  K  N  K  R  W  Q  *  *  P  T  N  L  L  K  V  T  S  F  N  P  Q  V  I  R  L  I  N  I  N  P  L  T  L  *  L  K  *  E  *  S  K  T  S  L  K  T  C  K  K  I  *  P  R  L  G  L  R  N  L  *  R  P  V  V  P  A  T  V  R  P  A  G  R  R  K  V  Q  R  L  N  F  H  Q  R  V  C  D  G  P  S  R  P  *  R  S  V  L  P  F  R  Y  E  V  Q  R  V  N  F  Q  Y  P  I  L  E  F  L  S  V  L  K  R  D  P  S  T  V  R  R  A  H  D  G  P  S  *  V  P  S  S  Q  P  V  F  P  E  I  K  S  T  A  Q  N  D  *  T  G  R  Y  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0317H24.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4752" stop="4519"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SRNSPKRPLKRVKKSDPDWDYATCDGPSCLRRSVLQVVARFRDSISTKESVTVRHARDGPSYHSVTKFRESIFSTQF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="5188" PGL_stop="6079"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5188" e_stop="5228"/>
            <exon e_start="5279" e_stop="5345"/>
            <exon e_start="5579" e_stop="6079"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.000" e_score="0.854"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.896"/>
          <exon-only e_score="0.902"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.854">
            <gDNA_exon_boundary e_start="5188" e_stop="5228" e_length="41"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.000">
            <gDNA_intron_boundary i_start="5229" i_stop="5278" i_length="50"/>
          </intron>
          <exon e_serial="2" e_score="0.896">
            <gDNA_exon_boundary e_start="5279" e_stop="5345" e_length="67"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="5346" i_stop="5578" i_length="233"/>
          </intron>
          <exon e_serial="3" e_score="0.902">
            <gDNA_exon_boundary e_start="5579" e_stop="6079" e_length="501"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5188" stop="5228"/>
              <exon start="5279" stop="5345"/>
              <exon start="5579" stop="5988"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5844" stop="6079"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209683" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCTAATCTCTTGTTAATGATGAGGCCTTGGTATAAAAGAAG : GCTTGATGAATTGATAGAAGGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATG : GATCGGAGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGTATATTGAGGAGCGGAGTGTCACGTACCGACACGAGAGGAATAAAGATAATGAATCTTGAAAGATGTTAATATATTTAATCTAATGAACCTAATTCCCAAATGAGTATGATGAGGAGGCGTGAGTCCTCATTGATGAGCTTGGTGTTGTAACCAAGGGTTATGGTAATTGTAAATGCTGCATGCTAAGGATATTAGTTGATTTTATGATGTTATCTGATATATACTGTTTTCTATTTTGAGTTGGCCGATGATACCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTCTTTTTGTTTAATTGTG</gDNA_template>
            <first_frame> P  N  L  L  L  M  M  R  P  W  Y  K  R  R :   L  D  E  L  I  E  G  D  *  G  I  G  C  H  V  P  V  P  G  *  N  M  :  D  R  S  V  T  F  R  H  Q  D  R  I  W  I  G  C  H  V  P  V  P  G  *  N  M  R  I  G  V  S  R  S  D  T  R  I  E  Y  G  S  G  A  T  F  R  Y  Q  D  R  M  R  I  G  V  S  R  S  D  T  R  I  V  Y  *  G  A  E  C  H  V  P  T  R  E  E  *  R  *  *  I  L  K  D  V  N  I  F  N  L  M  N  L  I  P  K  *  V  *  *  G  G  V  S  P  H  *  *  A  W  C  C  N  Q  G  L  W  *  L  *  M  L  H  A  K  D  I  S  *  F  Y  D  V  I  *  Y  I  L  F  S  I  L  S  W  P  M  I  P  T  Q  Y  P  C  F  V  L  T  P  T  F  M  F  S  F  C  L  I  V </first_frame>
            <second_frame>  L  I  S  C  *  *  *  G  L  G  I  K  E   : G  L  M  N  *  *  K  E  I  R  G  S  G  A  T  F  R  Y  Q  D  R  I  W :   I  G  V  S  R  S  D  T  R  I  E  Y  G  S  G  A  T  F  R  Y  Q  D  R  I  *  G  S  E  C  H  V  P  T  P  G  *  N  M  D  R  V  P  R  S  G  T  R  I  E  *  G  S  E  C  H  V  P  T  P  G  *  Y  I  E  E  R  S  V  T  Y  R  H  E  R  N  K  D  N  E  S  *  K  M  L  I  Y  L  I  *  *  T  *  F  P  N  E  Y  D  E  E  A  *  V  L  I  D  E  L  G  V  V  T  K  G  Y  G  N  C  K  C  C  M  L  R  I  L  V  D  F  M  M  L  S  D  I  Y  C  F  L  F  *  V  G  R  *  Y  L  L  S  T  R  V  L  Y  *  P  L  L  L  C  F  L  F  V  *  L   </second_frame>
            <third_frame>   *  S  L  V  N  D  E  A  L  V  *  K  K  :  A  *  *  I  D  R  R  R  L  G  D  R  V  P  R  S  G  T  R  I  E  Y   : G  S  E  C  H  V  P  T  P  G  *  N  M  D  R  V  P  R  S  G  T  R  I  E  Y  E  D  R  S  V  T  F  R  H  Q  D  R  I  W  I  G  C  H  V  P  V  P  G  *  N  E  D  R  S  V  T  F  R  H  Q  D  S  I  L  R  S  G  V  S  R  T  D  T  R  G  I  K  I  M  N  L  E  R  C  *  Y  I  *  S  N  E  P  N  S  Q  M  S  M  M  R  R  R  E  S  S  L  M  S  L  V  L  *  P  R  V  M  V  I  V  N  A  A  C  *  G  Y  *  L  I  L  *  C  Y  L  I  Y  T  V  F  Y  F  E  L  A  D  D  T  Y  S  V  P  V  F  C  T  D  P  Y  F  Y  V  F  F  L  F  N  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0317H24.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="14397" PGL_stop="13507"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14397" e_stop="14261"/>
            <exon e_start="14174" e_stop="14023"/>
            <exon e_start="13936" e_stop="13692"/>
            <exon e_start="13602" e_stop="13507"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.972" acc_prob="0.988" e_score="0.839"/>
          <exon-intron don_prob="0.980" acc_prob="0.999" e_score="0.967"/>
          <exon-intron don_prob="0.992" acc_prob="0.970" e_score="0.951"/>
          <exon-only e_score="0.969"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.839">
            <gDNA_exon_boundary e_start="14397" e_stop="14261" e_length="137"/>
          </exon>
          <intron i_serial="1" don_prob="0.972" acc_prob="0.988">
            <gDNA_intron_boundary i_start="14260" i_stop="14175" i_length="86"/>
          </intron>
          <exon e_serial="2" e_score="0.967">
            <gDNA_exon_boundary e_start="14174" e_stop="14023" e_length="152"/>
          </exon>
          <intron i_serial="2" don_prob="0.980" acc_prob="0.999">
            <gDNA_intron_boundary i_start="14022" i_stop="13937" i_length="86"/>
          </intron>
          <exon e_serial="3" e_score="0.951">
            <gDNA_exon_boundary e_start="13936" e_stop="13692" e_length="245"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.970">
            <gDNA_intron_boundary i_start="13691" i_stop="13603" i_length="89"/>
          </intron>
          <exon e_serial="4" e_score="0.969">
            <gDNA_exon_boundary e_start="13602" e_stop="13507" e_length="96"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14397" stop="14261"/>
              <exon start="14174" stop="14023"/>
              <exon start="13936" stop="13692"/>
              <exon start="13602" stop="13507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E468386" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCTTGTAACAAAACAAAAAAGATTTCATTTTCTTAGCACAAAAAATGGGCGCTACTGAAATATTTCTCTTATCTCTGATGATTGCATCGTGTCTCCTCTCTAGCGTTTCCGCTGCAACCAGACACTATAAATTTGAA : ATAAAAATGCAAAATGTGACACGACTATGTCACACAAAGAGTATAGTTACAGTAAATGGACAATTTCCTGGACCTAAAATTGTGGCAAGGGAAGGTGATCGTCTTGAAATTGAAGTTGTCAATCATGTTCACAACAATATCTCCATCCATTG : GCATGGAATTCGACAAGTTCGTAGTGGATGGGCCGATGGACCAGCTTATGTAACACAATGTCCAATTCAAAATGGTCAAAAATATGTGTATAATTTCACTATAATTGGTCAAAGAGGAACTTTTTGGTGGCATGCACATATTTCATGGTTGAGATCAACTCTCTATGGTCCTATTATTATTTTACCTAACAAAAATACTCCTTATCCATTTGCTAAACCATACAAAGAAATTCCCATTATCTTTG : GAGAATGGTTCAATGCTGATACTGAAGCTATAATTTCACAAGCTTTACAAACAGGTGGAGGTCCTAATGTTTCCGATGCTTATACTATCAATGGAC</gDNA_template>
            <first_frame> A  C  N  K  T  K  K  I  S  F  S  *  H  K  K  W  A  L  L  K  Y  F  S  Y  L  *  *  L  H  R  V  S  S  L  A  F  P  L  Q  P  D  T  I  N  L  K :   *  K  C  K  M  *  H  D  Y  V  T  Q  R  V  *  L  Q  *  M  D  N  F  L  D  L  K  L  W  Q  G  K  V  I  V  L  K  L  K  L  S  I  M  F  T  T  I  S  P  S  I   : G  M  E  F  D  K  F  V  V  D  G  P  M  D  Q  L  M  *  H  N  V  Q  F  K  M  V  K  N  M  C  I  I  S  L  *  L  V  K  E  E  L  F  G  G  M  H  I  F  H  G  *  D  Q  L  S  M  V  L  L  L  F  Y  L  T  K  I  L  L  I  H  L  L  N  H  T  K  K  F  P  L  S  L  :  E  N  G  S  M  L  I  L  K  L  *  F  H  K  L  Y  K  Q  V  E  V  L  M  F  P  M  L  I  L  S  M  D </first_frame>
            <second_frame>  L  V  T  K  Q  K  R  F  H  F  L  S  T  K  N  G  R  Y  *  N  I  S  L  I  S  D  D  C  I  V  S  P  L  *  R  F  R  C  N  Q  T  L  *  I  *   : N  K  N  A  K  C  D  T  T  M  S  H  K  E  Y  S  Y  S  K  W  T  I  S  W  T  *  N  C  G  K  G  R  *  S  S  *  N  *  S  C  Q  S  C  S  Q  Q  Y  L  H  P  L  :  A  W  N  S  T  S  S  *  W  M  G  R  W  T  S  L  C  N  T  M  S  N  S  K  W  S  K  I  C  V  *  F  H  Y  N  W  S  K  R  N  F  L  V  A  C  T  Y  F  M  V  E  I  N  S  L  W  S  Y  Y  Y  F  T  *  Q  K  Y  S  L  S  I  C  *  T  I  Q  R  N  S  H  Y  L  W :   R  M  V  Q  C  *  Y  *  S  Y  N  F  T  S  F  T  N  R  W  R  S  *  C  F  R  C  L  Y  Y  Q  W   </second_frame>
            <third_frame>   L  *  Q  N  K  K  D  F  I  F  L  A  Q  K  M  G  A  T  E  I  F  L  L  S  L  M  I  A  S  C  L  L  S  S  V  S  A  A  T  R  H  Y  K  F  E  :  I  K  M  Q  N  V  T  R  L  C  H  T  K  S  I  V  T  V  N  G  Q  F  P  G  P  K  I  V  A  R  E  G  D  R  L  E  I  E  V  V  N  H  V  H  N  N  I  S  I  H  W :   H  G  I  R  Q  V  R  S  G  W  A  D  G  P  A  Y  V  T  Q  C  P  I  Q  N  G  Q  K  Y  V  Y  N  F  T  I  I  G  Q  R  G  T  F  W  W  H  A  H  I  S  W  L  R  S  T  L  Y  G  P  I  I  I  L  P  N  K  N  T  P  Y  P  F  A  K  P  Y  K  E  I  P  I  I  F   : G  E  W  F  N  A  D  T  E  A  I  I  S  Q  A  L  Q  T  G  G  G  P  N  V  S  D  A  Y  T  I  N  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0317H24.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14389" stop="14261"/>
                    <exon start="14174" stop="14023"/>
                    <exon start="13936" stop="13692"/>
                    <exon start="13602" stop="13508"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>621</number_coding_nucleotides>
                  <number_encoded_amino_acids>207</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QNKKDFIFLAQKMGATEIFLLSLMIASCLLSSVSAATRHYKFEIKMQNVTRLCHTKSIVTVNGQFPGPKIVAREGDRLEIEVVNHVHNNISIHWHGIRQVRSGWADGPAYVTQCPIQNGQKYVYNFTIIGQRGTFWWHAHISWLRSTLYGPIIILPNKNTPYPFAKPYKEIPIIFGEWFNADTEAIISQALQTGGGPNVSDAYTING</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="21417" PGL_stop="20830"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21417" e_stop="20830"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.915"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.915">
            <gDNA_exon_boundary e_start="21417" e_stop="20830" e_length="588"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21417" stop="20830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330288" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCTGTATCATCCAGGAAAGGCCAATGTTGTGGCCGATGCTCTGAGTAGGAAGACTCCTAGCATAGGGAGTCTTACAGCGCTTAGTATTGAGGAGAGACCATTGGCTAGAGATGTGCAGATATTAGCTAACAGTCTTGTCCGCTTGCAGATTTCAGAAGAGAGTGATGGGGTGATTGCTTTTATTGAGGCTCGGTCTTCTTTAGTCGAGCAAATTCGTGCACACCAGTTTGATGATGAAAAATTATGTCTCATTCGAGACAAAGTATTGAGAGGGGAAGCTAAGGAGGCTGTCCTTGATTCTGATGGTGTCTTGCGGATCGGAGGCAGAATTTGTGTGCCCAGGACAGGCGATTTGATTAGATTAATTCTTGAGGAGGCCCATTGTTCTCGGTATTCCATCCATCCGGGAGCAGCGAAGATGTATCATGATCTGAGTCAGCATTACTGATGGTGTGAGATGAAGAGAGATATTTAAGACTTTGTTTCGAGGTGTTTGACTTGCCAGCCGGTCAAGTGTGAGCACCAGCGGCCCGGGGGTGTATCTCAGATGATGCCTATTCCTACTTGGAAGTGGGAGAGGATTACTA</gDNA_template>
            <first_frame> F  C  I  I  Q  E  R  P  M  L  W  P  M  L  *  V  G  R  L  L  A  *  G  V  L  Q  R  L  V  L  R  R  D  H  W  L  E  M  C  R  Y  *  L  T  V  L  S  A  C  R  F  Q  K  R  V  M  G  *  L  L  L  L  R  L  G  L  L  *  S  S  K  F  V  H  T  S  L  M  M  K  N  Y  V  S  F  E  T  K  Y  *  E  G  K  L  R  R  L  S  L  I  L  M  V  S  C  G  S  E  A  E  F  V  C  P  G  Q  A  I  *  L  D  *  F  L  R  R  P  I  V  L  G  I  P  S  I  R  E  Q  R  R  C  I  M  I  *  V  S  I  T  D  G  V  R  *  R  E  I  F  K  T  L  F  R  G  V  *  L  A  S  R  S  S  V  S  T  S  G  P  G  V  Y  L  R  *  C  L  F  L  L  G  S  G  R  G  L  L </first_frame>
            <second_frame>  S  V  S  S  R  K  G  Q  C  C  G  R  C  S  E  *  E  D  S  *  H  R  E  S  Y  S  A  *  Y  *  G  E  T  I  G  *  R  C  A  D  I  S  *  Q  S  C  P  L  A  D  F  R  R  E  *  W  G  D  C  F  Y  *  G  S  V  F  F  S  R  A  N  S  C  T  P  V  *  *  *  K  I  M  S  H  S  R  Q  S  I  E  R  G  S  *  G  G  C  P  *  F  *  W  C  L  A  D  R  R  Q  N  L  C  A  Q  D  R  R  F  D  *  I  N  S  *  G  G  P  L  F  S  V  F  H  P  S  G  S  S  E  D  V  S  *  S  E  S  A  L  L  M  V  *  D  E  E  R  Y  L  R  L  C  F  E  V  F  D  L  P  A  G  Q  V  *  A  P  A  A  R  G  C  I  S  D  D  A  Y  S  Y  L  E  V  G  E  D  Y   </second_frame>
            <third_frame>   L  Y  H  P  G  K  A  N  V  V  A  D  A  L  S  R  K  T  P  S  I  G  S  L  T  A  L  S  I  E  E  R  P  L  A  R  D  V  Q  I  L  A  N  S  L  V  R  L  Q  I  S  E  E  S  D  G  V  I  A  F  I  E  A  R  S  S  L  V  E  Q  I  R  A  H  Q  F  D  D  E  K  L  C  L  I  R  D  K  V  L  R  G  E  A  K  E  A  V  L  D  S  D  G  V  L  R  I  G  G  R  I  C  V  P  R  T  G  D  L  I  R  L  I  L  E  E  A  H  C  S  R  Y  S  I  H  P  G  A  A  K  M  Y  H  D  L  S  Q  H  Y  *  W  C  E  M  K  R  D  I  *  D  F  V  S  R  C  L  T  C  Q  P  V  K  C  E  H  Q  R  P  G  G  V  S  Q  M  M  P  I  P  T  W  K  W  E  R  I  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0317H24.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21415" stop="20969"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>444</number_coding_nucleotides>
                  <number_encoded_amino_acids>148</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LYHPGKANVVADALSRKTPSIGSLTALSIEERPLARDVQILANSLVRLQISEESDGVIAFIEARSSLVEQIRAHQFDDEKLCLIRDKVLRGEAKEAVLDSDGVLRIGGRICVPRTGDLIRLILEEAHCSRYSIHPGAAKMYHDLSQHY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="23548" PGL_stop="23976"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23548" e_stop="23976"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.935"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.935">
            <gDNA_exon_boundary e_start="23548" e_stop="23976" e_length="429"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23548" stop="23976"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279140" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTGAACCGTATGAGGTCTGACCCGGGCTATAAGAACCCCTAGATGTATCGCCACCCTCAAATGTCGGCATAGATGCATGAATAGGTCCCCGCTGCTGAAAAGAACCACTCACTCTCTGTGATCCCCTACCTCCAGATGAGGCACCATGAAACTGGCCTGATATACGGGCCCTTTTAGGGTCCCCAAACTCCTCTCTCTCCATCAATTCTGCCTCTTTGGCGGCGCTCACAATGGACTGGAAAGAAGCCCCCTCCCTAGATGCCCGAAACACAGCTGACCTGATAGAGAAAGTCAATCCCCTCACAAATCTGCGGATCCTCTCTGTCTCATTTGGAATAATGGCCAACGCATGCCTAGACAACTGGCAAAAACACGCCTCATACTCCGTAACCGATAAACCATCCTGTCTCAGACTCTCAAACCTCAAGC</gDNA_template>
            <first_frame> V  N  R  M  R  S  D  P  G  Y  K  N  P  *  M  Y  R  H  P  Q  M  S  A  *  M  H  E  *  V  P  A  A  E  K  N  H  S  L  S  V  I  P  Y  L  Q  M  R  H  H  E  T  G  L  I  Y  G  P  F  *  G  P  Q  T  P  L  S  P  S  I  L  P  L  W  R  R  S  Q  W  T  G  K  K  P  P  P  *  M  P  E  T  Q  L  T  *  *  R  K  S  I  P  S  Q  I  C  G  S  S  L  S  H  L  E  *  W  P  T  H  A  *  T  T  G  K  N  T  P  H  T  P  *  P  I  N  H  P  V  S  D  S  Q  T  S  S </first_frame>
            <second_frame>  *  T  V  *  G  L  T  R  A  I  R  T  P  R  C  I  A  T  L  K  C  R  H  R  C  M  N  R  S  P  L  L  K  R  T  T  H  S  L  *  S  P  T  S  R  *  G  T  M  K  L  A  *  Y  T  G  P  F  R  V  P  K  L  L  S  L  H  Q  F  C  L  F  G  G  A  H  N  G  L  E  R  S  P  L  P  R  C  P  K  H  S  *  P  D  R  E  S  Q  S  P  H  K  S  A  D  P  L  C  L  I  W  N  N  G  Q  R  M  P  R  Q  L  A  K  T  R  L  I  L  R  N  R  *  T  I  L  S  Q  T  L  K  P  Q   </second_frame>
            <third_frame>   E  P  Y  E  V  *  P  G  L  *  E  P  L  D  V  S  P  P  S  N  V  G  I  D  A  *  I  G  P  R  C  *  K  E  P  L  T  L  C  D  P  L  P  P  D  E  A  P  *  N  W  P  D  I  R  A  L  L  G  S  P  N  S  S  L  S  I  N  S  A  S  L  A  A  L  T  M  D  W  K  E  A  P  S  L  D  A  R  N  T  A  D  L  I  E  K  V  N  P  L  T  N  L  R  I  L  S  V  S  F  G  I  M  A  N  A  C  L  D  N  W  Q  K  H  A  S  Y  S  V  T  D  K  P  S  C  L  R  L  S  N  L  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0317H24.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23697" stop="23975"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>279</number_coding_nucleotides>
                  <number_encoded_amino_acids>93</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NWPDIRALLGSPNSSLSINSASLAALTMDWKEAPSLDARNTADLIEKVNPLTNLRILSVSFGIMANACLDNWQKHASYSVTDKPSCLRLSNLK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="30093" PGL_stop="29156"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30093" e_stop="29489"/>
            <exon e_start="29199" e_stop="29156"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.992"/>
          <exon-only e_score="0.682"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="30093" e_stop="29489" e_length="605"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="29488" i_stop="29200" i_length="289"/>
          </intron>
          <exon e_serial="2" e_score="0.682">
            <gDNA_exon_boundary e_start="29199" e_stop="29156" e_length="44"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30093" stop="29489"/>
              <exon start="29199" stop="29156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718284" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATCTCAAAGAAAACATAACAAAAGAAGTTATATTCAAAAGGTAAAAAATATGGTTAGTTATAAGATCAAATTCTCTCTTTTTTCATTCATCTTTCTACTAAACCTCATTTTGAGAAGTTGTGGGGCGCCATTTAGCAGCATACGAGTGGTTTACATCATCGACGCCCTTGAGAGTAGTTCTAAACCTTTAACTGTTCACTGTCAATCTAAAGATGATAATCTAGGATATAAAAATCTTCATTCAGGAGAGGAATATAACTTTAGATTTCAAGAGAAATTTTTTGGTGGTACACTTTTCTTTTGTCATTTTTGGTGGGATGACAAAAATATAATATTTGATGTTTATAATGATGATATAGCTACATTTTGTGGAGATTTAATCCCTTTAGAAGGATTTGATTATGAATGTTTTTGGAAGGTGCAAGAAGATGGATTTTACTTTGCACCCCATAGAGATCCTCCATCTGGATATGAGAAAAAACATGATTGGTCAAAAGTATTAGTTTAATTTAAATAAAATGTTTTGAGTCCTCTTTTAAGGTAATGAAAATGAAGAAAAAATATTATAAAAAAACTTAAAAATAGTCATTATAAATAAATACAA : TAAAGAAAAAAAGAATTATTTTAAAGTAAAAAAGAAATGAAAAA</gDNA_template>
            <first_frame> D  L  K  E  N  I  T  K  E  V  I  F  K  R  *  K  I  W  L  V  I  R  S  N  S  L  F  F  H  S  S  F  Y  *  T  S  F  *  E  V  V  G  R  H  L  A  A  Y  E  W  F  T  S  S  T  P  L  R  V  V  L  N  L  *  L  F  T  V  N  L  K  M  I  I  *  D  I  K  I  F  I  Q  E  R  N  I  T  L  D  F  K  R  N  F  L  V  V  H  F  S  F  V  I  F  G  G  M  T  K  I  *  Y  L  M  F  I  M  M  I  *  L  H  F  V  E  I  *  S  L  *  K  D  L  I  M  N  V  F  G  R  C  K  K  M  D  F  T  L  H  P  I  E  I  L  H  L  D  M  R  K  N  M  I  G  Q  K  Y  *  F  N  L  N  K  M  F  *  V  L  F  *  G  N  E  N  E  E  K  I  L  *  K  N  L  K  I  V  I  I  N  K  Y  N :   K  E  K  K  N  Y  F  K  V  K  K  K  *  K  </first_frame>
            <second_frame>  I  S  K  K  T  *  Q  K  K  L  Y  S  K  G  K  K  Y  G  *  L  *  D  Q  I  L  S  F  F  I  H  L  S  T  K  P  H  F  E  K  L  W  G  A  I  *  Q  H  T  S  G  L  H  H  R  R  P  *  E  *  F  *  T  F  N  C  S  L  S  I  *  R  *  *  S  R  I  *  K  S  S  F  R  R  G  I  *  L  *  I  S  R  E  I  F  W  W  Y  T  F  L  L  S  F  L  V  G  *  Q  K  Y  N  I  *  C  L  *  *  *  Y  S  Y  I  L  W  R  F  N  P  F  R  R  I  *  L  *  M  F  L  E  G  A  R  R  W  I  L  L  C  T  P  *  R  S  S  I  W  I  *  E  K  T  *  L  V  K  S  I  S  L  I  *  I  K  C  F  E  S  S  F  K  V  M  K  M  K  K  K  Y  Y  K  K  T  *  K  *  S  L  *  I  N  T   : I  K  K  K  R  I  I  L  K  *  K  R  N  E  K </second_frame>
            <third_frame>   S  Q  R  K  H  N  K  R  S  Y  I  Q  K  V  K  N  M  V  S  Y  K  I  K  F  S  L  F  S  F  I  F  L  L  N  L  I  L  R  S  C  G  A  P  F  S  S  I  R  V  V  Y  I  I  D  A  L  E  S  S  S  K  P  L  T  V  H  C  Q  S  K  D  D  N  L  G  Y  K  N  L  H  S  G  E  E  Y  N  F  R  F  Q  E  K  F  F  G  G  T  L  F  F  C  H  F  W  W  D  D  K  N  I  I  F  D  V  Y  N  D  D  I  A  T  F  C  G  D  L  I  P  L  E  G  F  D  Y  E  C  F  W  K  V  Q  E  D  G  F  Y  F  A  P  H  R  D  P  P  S  G  Y  E  K  K  H  D  W  S  K  V  L  V  *  F  K  *  N  V  L  S  P  L  L  R  *  *  K  *  R  K  N  I  I  K  K  L  K  N  S  H  Y  K  *  I  Q  :  *  R  K  K  E  L  F  *  S  K  K  E  M  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0317H24.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30091" stop="29585"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>504</number_coding_nucleotides>
                  <number_encoded_amino_acids>168</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SQRKHNKRSYIQKVKNMVSYKIKFSLFSFIFLLNLILRSCGAPFSSIRVVYIIDALESSSKPLTVHCQSKDDNLGYKNLHSGEEYNFRFQEKFFGGTLFFCHFWWDDKNIIFDVYNDDIATFCGDLIPLEGFDYECFWKVQEDGFYFAPHRDPPSGYEKKHDWSKVLV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="33941" PGL_stop="33494"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33941" e_stop="33494"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.911"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.911">
            <gDNA_exon_boundary e_start="33941" e_stop="33494" e_length="448"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33941" stop="33620"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33941" stop="33651"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33940" stop="33494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200845" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATGTTTTTCTCGCTTTATACAAAAACAGAAACACAATATGTACAGTTCTGTTGTATAAAACTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAATAAAATGTTTGTAAATTGTATGATTAAGTGTATAACACGAAGATATAGATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACTGAAAAAGAATTATACATTGCTGTGTATAAAGCGAGAGAGACGAGCGAGAATGGAGAGTGGCGAGCGAGATTTTTGGGAGAGAGACGCTGGCAAATTTTAGCTAATGTTTGCTATGGAGCACAATTAAATCAAACCATAGCTATTCCATTTATTTTAGGTTATTAG</gDNA_template>
            <first_frame> *  N  V  C  I  L  H  N  Y  K  C  I  A  R  R  Y  M  F  F  S  L  Y  T  K  T  E  T  Q  Y  V  Q  F  C  C  I  K  L  E  K  I  V  F  H  C  N  C  I  I  H  N  C  I  I  R  W  P  F  S  L  Q  Y  L  K  *  N  V  C  K  L  Y  D  *  V  Y  N  T  K  I  *  I  F  A  C  V  Y  T  I  F  S  R  F  I  Q  N  *  K  R  I  I  H  C  C  V  *  S  E  R  D  E  R  E  W  R  V  A  S  E  I  F  G  R  E  T  L  A  N  F  S  *  C  L  L  W  S  T  I  K  S  N  H  S  Y  S  I  Y  F  R  L  L  </first_frame>
            <second_frame>  K  M  Y  V  Y  C  I  I  I  S  V  *  Q  E  D  I  C  F  S  R  F  I  Q  K  Q  K  H  N  M  Y  S  S  V  V  *  N  *  R  K  L  Y  F  T  A  I  V  *  F  T  I  V  *  F  V  G  L  F  L  C  N  I  *  N  K  M  F  V  N  C  M  I  K  C  I  T  R  R  Y  R  F  L  H  V  Y  I  Q  F  S  L  A  L  Y  K  T  E  K  E  L  Y  I  A  V  Y  K  A  R  E  T  S  E  N  G  E  W  R  A  R  F  L  G  E  R  R  W  Q  I  L  A  N  V  C  Y  G  A  Q  L  N  Q  T  I  A  I  P  F  I  L  G  Y  * </second_frame>
            <third_frame>   K  C  M  Y  I  A  *  L  *  V  Y  S  K  K  I  Y  V  F  L  A  L  Y  K  N  R  N  T  I  C  T  V  L  L  Y  K  T  R  E  N  C  I  S  L  Q  L  Y  N  S  Q  L  Y  N  S  L  A  F  F  S  A  I  F  E  I  K  C  L  *  I  V  *  L  S  V  *  H  E  D  I  D  F  C  M  C  I  Y  N  F  L  S  L  Y  T  K  L  K  K  N  Y  T  L  L  C  I  K  R  E  R  R  A  R  M  E  S  G  E  R  D  F  W  E  R  D  A  G  K  F  *  L  M  F  A  M  E  H  N  *  I  K  P  *  L  F  H  L  F  *  V  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0317H24.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33754" stop="33494"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NKMFVNCMIKCITRRYRFLHVYIQFSLALYKTEKELYIAVYKARETSENGEWRARFLGERRWQILANVCYGAQLNQTIAIPFILGY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="41523" PGL_stop="44578"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41523" e_stop="41647"/>
            <exon e_start="42298" e_stop="42623"/>
            <exon e_start="42763" e_stop="42868"/>
            <exon e_start="42958" e_stop="43043"/>
            <exon e_start="43608" e_stop="44080"/>
            <exon e_start="44161" e_stop="44578"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.973" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="41523" e_stop="41647" e_length="125"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.991">
            <gDNA_intron_boundary i_start="41648" i_stop="42297" i_length="650"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42298" e_stop="42623" e_length="326"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.989">
            <gDNA_intron_boundary i_start="42624" i_stop="42762" i_length="139"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="42763" e_stop="42868" e_length="106"/>
          </exon>
          <intron i_serial="3" don_prob="0.983" acc_prob="0.999">
            <gDNA_intron_boundary i_start="42869" i_stop="42957" i_length="89"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="42958" e_stop="43043" e_length="86"/>
          </exon>
          <intron i_serial="4" don_prob="0.985" acc_prob="1.000">
            <gDNA_intron_boundary i_start="43044" i_stop="43607" i_length="564"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="43608" e_stop="44080" e_length="473"/>
          </exon>
          <intron i_serial="5" don_prob="0.980" acc_prob="0.973">
            <gDNA_intron_boundary i_start="44081" i_stop="44160" i_length="80"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="44161" e_stop="44578" e_length="418"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41523" stop="41647"/>
              <exon start="42298" stop="42623"/>
              <exon start="42763" stop="42868"/>
              <exon start="42958" stop="43043"/>
              <exon start="43608" stop="43853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736170" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41523" stop="41647"/>
              <exon start="42298" stop="42623"/>
              <exon start="42763" stop="42832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313841" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41524" stop="41647"/>
              <exon start="42298" stop="42623"/>
              <exon start="42763" stop="42868"/>
              <exon start="42958" stop="43043"/>
              <exon start="43608" stop="43832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701691" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41526" stop="41647"/>
              <exon start="42298" stop="42623"/>
              <exon start="42763" stop="42868"/>
              <exon start="42958" stop="43026"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332281" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41526" stop="41647"/>
              <exon start="42298" stop="42481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332282" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41527" stop="41647"/>
              <exon start="42298" stop="42623"/>
              <exon start="42763" stop="42815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41528" stop="41647"/>
              <exon start="42298" stop="42623"/>
              <exon start="42763" stop="42868"/>
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              <exon start="43608" stop="43649"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332069" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41528" stop="41647"/>
              <exon start="42298" stop="42623"/>
              <exon start="42763" stop="42868"/>
              <exon start="42958" stop="43043"/>
              <exon start="43608" stop="43648"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332106" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41528" stop="41647"/>
              <exon start="42298" stop="42623"/>
              <exon start="42763" stop="42769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333102" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41530" stop="41647"/>
              <exon start="42298" stop="42623"/>
              <exon start="42763" stop="42868"/>
              <exon start="42958" stop="43043"/>
              <exon start="43608" stop="44080"/>
              <exon start="44161" stop="44555"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41530" stop="41647"/>
              <exon start="42298" stop="42623"/>
              <exon start="42763" stop="42868"/>
              <exon start="42958" stop="43043"/>
              <exon start="43608" stop="43670"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41530" stop="41647"/>
              <exon start="42298" stop="42623"/>
              <exon start="42763" stop="42868"/>
              <exon start="42958" stop="43023"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333566" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41533" stop="41647"/>
              <exon start="42298" stop="42623"/>
              <exon start="42763" stop="42778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41534" stop="41647"/>
              <exon start="42298" stop="42623"/>
              <exon start="42763" stop="42861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296318" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41534" stop="41647"/>
              <exon start="42298" stop="42623"/>
              <exon start="42763" stop="42861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296459" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41537" stop="41647"/>
              <exon start="42298" stop="42623"/>
              <exon start="42763" stop="42868"/>
              <exon start="42958" stop="43043"/>
              <exon start="43608" stop="43732"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257494" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41539" stop="41647"/>
              <exon start="42298" stop="42623"/>
              <exon start="42763" stop="42865"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257441" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41541" stop="41647"/>
              <exon start="42298" stop="42514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285564" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41549" stop="41647"/>
              <exon start="42298" stop="42490"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280249" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41612" stop="41647"/>
              <exon start="42298" stop="42623"/>
              <exon start="42763" stop="42868"/>
              <exon start="42958" stop="43018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330727" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41625" stop="41647"/>
              <exon start="42298" stop="42623"/>
              <exon start="42763" stop="42868"/>
              <exon start="42958" stop="43043"/>
              <exon start="43608" stop="43897"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702819" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41626" stop="41647"/>
              <exon start="42298" stop="42623"/>
              <exon start="42763" stop="42868"/>
              <exon start="42958" stop="43043"/>
              <exon start="43608" stop="43746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42313" stop="42623"/>
              <exon start="42763" stop="42818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698802" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42315" stop="42623"/>
              <exon start="42763" stop="42868"/>
              <exon start="42958" stop="43043"/>
              <exon start="43608" stop="43755"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326861" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42315" stop="42623"/>
              <exon start="42763" stop="42868"/>
              <exon start="42958" stop="43043"/>
              <exon start="43608" stop="43749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326153" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42406" stop="42623"/>
              <exon start="42763" stop="42868"/>
              <exon start="42958" stop="43043"/>
              <exon start="43608" stop="43805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371573" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42406" stop="42623"/>
              <exon start="42763" stop="42868"/>
              <exon start="42958" stop="43018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280632" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42511" stop="42623"/>
              <exon start="42763" stop="42868"/>
              <exon start="42958" stop="43043"/>
              <exon start="43608" stop="43784"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282557" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42531" stop="42623"/>
              <exon start="42763" stop="42868"/>
              <exon start="42958" stop="43043"/>
              <exon start="43608" stop="43824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251279" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42541" stop="42623"/>
              <exon start="42763" stop="42868"/>
              <exon start="42958" stop="43043"/>
              <exon start="43608" stop="43748"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408837" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42572" stop="42623"/>
              <exon start="42763" stop="42868"/>
              <exon start="42958" stop="43043"/>
              <exon start="43608" stop="43788"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473084" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42587" stop="42623"/>
              <exon start="42763" stop="42868"/>
              <exon start="42958" stop="43043"/>
              <exon start="43608" stop="43702"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348970" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42589" stop="42623"/>
              <exon start="42763" stop="42868"/>
              <exon start="42958" stop="43043"/>
              <exon start="43608" stop="43670"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290356" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42763" stop="42868"/>
              <exon start="42958" stop="43043"/>
              <exon start="43608" stop="44080"/>
              <exon start="44161" stop="44218"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699925" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42763" stop="42868"/>
              <exon start="42958" stop="43043"/>
              <exon start="43608" stop="44080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344708" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42763" stop="42868"/>
              <exon start="42958" stop="43043"/>
              <exon start="43608" stop="44079"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E410865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42763" stop="42868"/>
              <exon start="42958" stop="43043"/>
              <exon start="43608" stop="43843"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469547" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42763" stop="42868"/>
              <exon start="42958" stop="43043"/>
              <exon start="43608" stop="43647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475161" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42764" stop="42868"/>
              <exon start="42958" stop="43043"/>
              <exon start="43608" stop="43715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294035" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42773" stop="42868"/>
              <exon start="42958" stop="43043"/>
              <exon start="43608" stop="43793"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298306" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42776" stop="42868"/>
              <exon start="42958" stop="43043"/>
              <exon start="43608" stop="43885"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284016" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42779" stop="42868"/>
              <exon start="42958" stop="43043"/>
              <exon start="43608" stop="43969"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297862" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42781" stop="42868"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469113" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42785" stop="42868"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E406216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E476753" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E298462" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42801" stop="42868"/>
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              <exon start="43608" stop="43977"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710271" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42804" stop="42868"/>
              <exon start="42958" stop="43043"/>
              <exon start="43608" stop="43837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318461" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42807" stop="42868"/>
              <exon start="42958" stop="43043"/>
              <exon start="43608" stop="44080"/>
              <exon start="44161" stop="44191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710281" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42819" stop="42868"/>
              <exon start="42958" stop="43043"/>
              <exon start="43608" stop="43688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321376" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42831" stop="42868"/>
              <exon start="42958" stop="43043"/>
              <exon start="43608" stop="43972"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404576" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42958" stop="43043"/>
              <exon start="43608" stop="43903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475489" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42964" stop="43043"/>
              <exon start="43608" stop="44080"/>
              <exon start="44161" stop="44260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E406932" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42982" stop="43043"/>
              <exon start="43608" stop="43882"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291095" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42992" stop="43043"/>
              <exon start="43608" stop="44045"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43009" stop="43043"/>
              <exon start="43608" stop="44080"/>
              <exon start="44161" stop="44168"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289176" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43608" stop="44041"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282468" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43611" stop="44080"/>
              <exon start="44161" stop="44173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43660" stop="44080"/>
              <exon start="44161" stop="44558"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43696" stop="44080"/>
              <exon start="44161" stop="44168"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329178" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43705" stop="44080"/>
              <exon start="44161" stop="44433"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279459" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43734" stop="43911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293854" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43814" stop="44080"/>
              <exon start="44161" stop="44545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371572" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43839" stop="44080"/>
              <exon start="44161" stop="44553"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284278" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43995" stop="44080"/>
              <exon start="44161" stop="44545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218631" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44011" stop="44080"/>
              <exon start="44161" stop="44566"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735021" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44033" stop="44080"/>
              <exon start="44161" stop="44578"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230008" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44034" stop="44080"/>
              <exon start="44161" stop="44555"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227231" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44037" stop="44080"/>
              <exon start="44161" stop="44555"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44041" stop="44080"/>
              <exon start="44161" stop="44555"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230554" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44202" stop="44578"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230083" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44209" stop="44577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220409" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44247" stop="44550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230771" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAAATATTTTCTTAACAAATTACAGAGAGTAATTTTCAAATAAACTTTTGTTATTTTGTGAGTCTTTAGAGTTAGTCAAGTACAAATGGCTACCTCCATCTCAACCATTGGAGCTGTCAACAAG : TTGAGTTTGAACAACTCTGTTGTTGGAACTTCAGTTCCACCAACAGCCTTCTTTGGCAAAACCTTAAAGAAAGTGAACAACAAAGTTTCCAGCACAAACATCTCAAACAAGAACTTGAGGCTGGTTGCTCAAGAAAAAGAAATTGATGAGAAGAAACAGACTGATGGGGACAGATGGAAGGGACTTGTTAACGATGTGTCCGATGATCAACAAGACATTGCAAGGGGTAAAGGTTTGGTTGATTCGCTTTTCCAGGCTCCAACGGGTACTGGTACTCACCACGCCATCATGAATTCCTATGAATACCTCAGCCAAGGTCTTCGCCA : ATATAACTTGGACAACAAGTTGGACGGATTCTACATCGCTCCTGCTTTCATGGACAAGCTTGTTGTTCACATCACCAAGAACTTCTTAACGTTGCCCAACATCAAG : GTTCCACTTATTTTGGGTGTTTGGGGAGGAAAAGGTCAAGGTAAATCATTCCAATGTGAGCTTGTCTTCAGAAAGATGGGAATCAA : CCCAATTATGATGAGTGCTGGAGAATTAGAAAGTGGAAATGCAGGAGAGCCAGCTAAATTGATCAGGCAAAGGTACAGAGAGGCCGCGGAAATCATCAGGAAGGGAAACATGTGTTGCCTCTTCATCAACGATCTTGATGCAGGAGCCGGTAGAATGGGTGGAACTACACAATACACTGTCAACAACCAAATGGTGAATGCTACACTCATGAACATTGCTGATAACCCGACGAATGTCCAACTCCCCGGTATGTACAACAAGCAAGAGAATGCCAGGGTACCTATTATTGTCACTGGTAACGATTTCTCCACATTGTATGCACCTCTTATCCGTGATGGTCGTATGGAGAAATTCTACTGGGCACCAACTAGAGAAGACAGAATTGGTGTTTGCAAAGGTATTTTCAGGACTGACAGAGTTCCTGATGATGACATTGTCAAGATCGTCGATAGCTTCCCTGGACAATCTATTG : ATTTCTTCGGTGCTCTGAGGGCGAGAGTATACGATGATGAAGTGAGGAAATGGATTGGAAGTACTGGAATTGAACAAATTGGAGAGAAACTTTTGAACTCAAGGGATGGACCACCAACATTTGAGCAACCAAAGATGACTATCGATAAGCTCCTCGAGTACGGCAACATGCTTGTTCAAGAGCAAGAGAATGTTAAGAGAGTTCAGTTAGCTGACAAGTACCTTAAAGAAGCTGCACTTGGTGATGCAAATGCTGATTCCATCAACAATGGATCCTTCTTTGCTAGCTAGACATTTTCGTCAATTTAATCAGTTCTGTTTTTTTGCATCATTTTTGTCATGATATTGTAATGATCTTCGTGTGATGATTGTATTAGTGAATATAAGTTTGATCTTATATCCGCGCGATTTCAGTTATG</gDNA_template>
            <first_frame> *  N  I  F  L  T  N  Y  R  E  *  F  S  N  K  L  L  L  F  C  E  S  L  E  L  V  K  Y  K  W  L  P  P  S  Q  P  L  E  L  S  T  S :   *  V  *  T  T  L  L  L  E  L  Q  F  H  Q  Q  P  S  L  A  K  P  *  R  K  *  T  T  K  F  P  A  Q  T  S  Q  T  R  T  *  G  W  L  L  K  K  K  K  L  M  R  R  N  R  L  M  G  T  D  G  R  D  L  L  T  M  C  P  M  I  N  K  T  L  Q  G  V  K  V  W  L  I  R  F  S  R  L  Q  R  V  L  V  L  T  T  P  S  *  I  P  M  N  T  S  A  K  V  F  A   : N  I  T  W  T  T  S  W  T  D  S  T  S  L  L  L  S  W  T  S  L  L  F  T  S  P  R  T  S  *  R  C  P  T  S  R :   F  H  L  F  W  V  F  G  E  E  K  V  K  V  N  H  S  N  V  S  L  S  S  E  R  W  E  S   : T  Q  L  *  *  V  L  E  N  *  K  V  E  M  Q  E  S  Q  L  N  *  S  G  K  G  T  E  R  P  R  K  S  S  G  R  E  T  C  V  A  S  S  S  T  I  L  M  Q  E  P  V  E  W  V  E  L  H  N  T  L  S  T  T  K  W  *  M  L  H  S  *  T  L  L  I  T  R  R  M  S  N  S  P  V  C  T  T  S  K  R  M  P  G  Y  L  L  L  S  L  V  T  I  S  P  H  C  M  H  L  L  S  V  M  V  V  W  R  N  S  T  G  H  Q  L  E  K  T  E  L  V  F  A  K  V  F  S  G  L  T  E  F  L  M  M  T  L  S  R  S  S  I  A  S  L  D  N  L  L  :  I  S  S  V  L  *  G  R  E  Y  T  M  M  K  *  G  N  G  L  E  V  L  E  L  N  K  L  E  R  N  F  *  T  Q  G  M  D  H  Q  H  L  S  N  Q  R  *  L  S  I  S  S  S  S  T  A  T  C  L  F  K  S  K  R  M  L  R  E  F  S  *  L  T  S  T  L  K  K  L  H  L  V  M  Q  M  L  I  P  S  T  M  D  P  S  L  L  A  R  H  F  R  Q  F  N  Q  F  C  F  F  A  S  F  L  S  *  Y  C  N  D  L  R  V  M  I  V  L  V  N  I  S  L  I  L  Y  P  R  D  F  S  Y  </first_frame>
            <second_frame>  K  I  F  S  *  Q  I  T  E  S  N  F  Q  I  N  F  C  Y  F  V  S  L  *  S  *  S  S  T  N  G  Y  L  H  L  N  H  W  S  C  Q  Q   : V  E  F  E  Q  L  C  C  W  N  F  S  S  T  N  S  L  L  W  Q  N  L  K  E  S  E  Q  Q  S  F  Q  H  K  H  L  K  Q  E  L  E  A  G  C  S  R  K  R  N  *  *  E  E  T  D  *  W  G  Q  M  E  G  T  C  *  R  C  V  R  *  S  T  R  H  C  K  G  *  R  F  G  *  F  A  F  P  G  S  N  G  Y  W  Y  S  P  R  H  H  E  F  L  *  I  P  Q  P  R  S  S  P  :  I  *  L  G  Q  Q  V  G  R  I  L  H  R  S  C  F  H  G  Q  A  C  C  S  H  H  Q  E  L  L  N  V  A  Q  H  Q   : G  S  T  Y  F  G  C  L  G  R  K  R  S  R  *  I  I  P  M  *  A  C  L  Q  K  D  G  N  Q  :  P  N  Y  D  E  C  W  R  I  R  K  W  K  C  R  R  A  S  *  I  D  Q  A  K  V  Q  R  G  R  G  N  H  Q  E  G  K  H  V  L  P  L  H  Q  R  S  *  C  R  S  R  *  N  G  W  N  Y  T  I  H  C  Q  Q  P  N  G  E  C  Y  T  H  E  H  C  *  *  P  D  E  C  P  T  P  R  Y  V  Q  Q  A  R  E  C  Q  G  T  Y  Y  C  H  W  *  R  F  L  H  I  V  C  T  S  Y  P  *  W  S  Y  G  E  I  L  L  G  T  N  *  R  R  Q  N  W  C  L  Q  R  Y  F  Q  D  *  Q  S  S  *  *  *  H  C  Q  D  R  R  *  L  P  W  T  I  Y  * :   F  L  R  C  S  E  G  E  S  I  R  *  *  S  E  E  M  D  W  K  Y  W  N  *  T  N  W  R  E  T  F  E  L  K  G  W  T  T  N  I  *  A  T  K  D  D  Y  R  *  A  P  R  V  R  Q  H  A  C  S  R  A  R  E  C  *  E  S  S  V  S  *  Q  V  P  *  R  S  C  T  W  *  C  K  C  *  F  H  Q  Q  W  I  L  L  C  *  L  D  I  F  V  N  L  I  S  S  V  F  L  H  H  F  C  H  D  I  V  M  I  F  V  *  *  L  Y  *  *  I  *  V  *  S  Y  I  R  A  I  S  V  M </second_frame>
            <third_frame>   K  Y  F  L  N  K  L  Q  R  V  I  F  K  *  T  F  V  I  L  *  V  F  R  V  S  Q  V  Q  M  A  T  S  I  S  T  I  G  A  V  N  K  :  L  S  L  N  N  S  V  V  G  T  S  V  P  P  T  A  F  F  G  K  T  L  K  K  V  N  N  K  V  S  S  T  N  I  S  N  K  N  L  R  L  V  A  Q  E  K  E  I  D  E  K  K  Q  T  D  G  D  R  W  K  G  L  V  N  D  V  S  D  D  Q  Q  D  I  A  R  G  K  G  L  V  D  S  L  F  Q  A  P  T  G  T  G  T  H  H  A  I  M  N  S  Y  E  Y  L  S  Q  G  L  R  Q :   Y  N  L  D  N  K  L  D  G  F  Y  I  A  P  A  F  M  D  K  L  V  V  H  I  T  K  N  F  L  T  L  P  N  I  K  :  V  P  L  I  L  G  V  W  G  G  K  G  Q  G  K  S  F  Q  C  E  L  V  F  R  K  M  G  I  N :   P  I  M  M  S  A  G  E  L  E  S  G  N  A  G  E  P  A  K  L  I  R  Q  R  Y  R  E  A  A  E  I  I  R  K  G  N  M  C  C  L  F  I  N  D  L  D  A  G  A  G  R  M  G  G  T  T  Q  Y  T  V  N  N  Q  M  V  N  A  T  L  M  N  I  A  D  N  P  T  N  V  Q  L  P  G  M  Y  N  K  Q  E  N  A  R  V  P  I  I  V  T  G  N  D  F  S  T  L  Y  A  P  L  I  R  D  G  R  M  E  K  F  Y  W  A  P  T  R  E  D  R  I  G  V  C  K  G  I  F  R  T  D  R  V  P  D  D  D  I  V  K  I  V  D  S  F  P  G  Q  S  I   : D  F  F  G  A  L  R  A  R  V  Y  D  D  E  V  R  K  W  I  G  S  T  G  I  E  Q  I  G  E  K  L  L  N  S  R  D  G  P  P  T  F  E  Q  P  K  M  T  I  D  K  L  L  E  Y  G  N  M  L  V  Q  E  Q  E  N  V  K  R  V  Q  L  A  D  K  Y  L  K  E  A  A  L  G  D  A  N  A  D  S  I  N  N  G  S  F  F  A  S  *  T  F  S  S  I  *  S  V  L  F  F  C  I  I  F  V  M  I  L  *  *  S  S  C  D  D  C  I  S  E  Y  K  F  D  L  I  S  A  R  F  Q  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0317H24.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41585" stop="41647"/>
                    <exon start="42298" stop="42623"/>
                    <exon start="42763" stop="42868"/>
                    <exon start="42958" stop="43043"/>
                    <exon start="43608" stop="44080"/>
                    <exon start="44161" stop="44450"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1341</number_coding_nucleotides>
                  <number_encoded_amino_acids>447</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VFRVSQVQMATSISTIGAVNKLSLNNSVVGTSVPPTAFFGKTLKKVNNKVSSTNISNKNLRLVAQEKEIDEKKQTDGDRWKGLVNDVSDDQQDIARGKGLVDSLFQAPTGTGTHHAIMNSYEYLSQGLRQYNLDNKLDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGVWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDRVPDDDIVKIVDSFPGQSIDFFGALRARVYDDEVRKWIGSTGIEQIGEKLLNSRDGPPTFEQPKMTIDKLLEYGNMLVQEQENVKRVQLADKYLKEAALGDANADSINNGSFFAS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="42254" e_stop="42623"/>
            <exon e_start="42763" e_stop="42868"/>
            <exon e_start="42958" e_stop="43043"/>
            <exon e_start="43608" e_stop="44080"/>
            <exon e_start="44161" e_stop="44578"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.973" e_score="0.911"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="42254" e_stop="42623" e_length="370"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.989">
            <gDNA_intron_boundary i_start="42624" i_stop="42762" i_length="139"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42763" e_stop="42868" e_length="106"/>
          </exon>
          <intron i_serial="2" don_prob="0.983" acc_prob="0.999">
            <gDNA_intron_boundary i_start="42869" i_stop="42957" i_length="89"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="42958" e_stop="43043" e_length="86"/>
          </exon>
          <intron i_serial="3" don_prob="0.985" acc_prob="1.000">
            <gDNA_intron_boundary i_start="43044" i_stop="43607" i_length="564"/>
          </intron>
          <exon e_serial="4" e_score="0.911">
            <gDNA_exon_boundary e_start="43608" e_stop="44080" e_length="473"/>
          </exon>
          <intron i_serial="4" don_prob="0.980" acc_prob="0.973">
            <gDNA_intron_boundary i_start="44081" i_stop="44160" i_length="80"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="44161" e_stop="44578" e_length="418"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42254" stop="42623"/>
              <exon start="42763" stop="42868"/>
              <exon start="42958" stop="43043"/>
              <exon start="43608" stop="43948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702654" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42313" stop="42623"/>
              <exon start="42763" stop="42818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698802" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42315" stop="42623"/>
              <exon start="42763" stop="42868"/>
              <exon start="42958" stop="43043"/>
              <exon start="43608" stop="43755"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326861" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42315" stop="42623"/>
              <exon start="42763" stop="42868"/>
              <exon start="42958" stop="43043"/>
              <exon start="43608" stop="43749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326153" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42406" stop="42623"/>
              <exon start="42763" stop="42868"/>
              <exon start="42958" stop="43043"/>
              <exon start="43608" stop="43805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371573" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42406" stop="42623"/>
              <exon start="42763" stop="42868"/>
              <exon start="42958" stop="43018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280632" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42511" stop="42623"/>
              <exon start="42763" stop="42868"/>
              <exon start="42958" stop="43043"/>
              <exon start="43608" stop="43784"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282557" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42531" stop="42623"/>
              <exon start="42763" stop="42868"/>
              <exon start="42958" stop="43043"/>
              <exon start="43608" stop="43824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251279" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42541" stop="42623"/>
              <exon start="42763" stop="42868"/>
              <exon start="42958" stop="43043"/>
              <exon start="43608" stop="43748"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408837" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42572" stop="42623"/>
              <exon start="42763" stop="42868"/>
              <exon start="42958" stop="43043"/>
              <exon start="43608" stop="43788"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473084" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42587" stop="42623"/>
              <exon start="42763" stop="42868"/>
              <exon start="42958" stop="43043"/>
              <exon start="43608" stop="43702"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348970" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42589" stop="42623"/>
              <exon start="42763" stop="42868"/>
              <exon start="42958" stop="43043"/>
              <exon start="43608" stop="43670"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290356" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42763" stop="42868"/>
              <exon start="42958" stop="43043"/>
              <exon start="43608" stop="44080"/>
              <exon start="44161" stop="44218"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699925" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42763" stop="42868"/>
              <exon start="42958" stop="43043"/>
              <exon start="43608" stop="44080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344708" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42763" stop="42868"/>
              <exon start="42958" stop="43043"/>
              <exon start="43608" stop="44079"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E410865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42763" stop="42868"/>
              <exon start="42958" stop="43043"/>
              <exon start="43608" stop="43843"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469547" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42763" stop="42868"/>
              <exon start="42958" stop="43043"/>
              <exon start="43608" stop="43647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475161" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42764" stop="42868"/>
              <exon start="42958" stop="43043"/>
              <exon start="43608" stop="43715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294035" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42773" stop="42868"/>
              <exon start="42958" stop="43043"/>
              <exon start="43608" stop="43793"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298306" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42776" stop="42868"/>
              <exon start="42958" stop="43043"/>
              <exon start="43608" stop="43885"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284016" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42779" stop="42868"/>
              <exon start="42958" stop="43043"/>
              <exon start="43608" stop="43969"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297862" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42781" stop="42868"/>
              <exon start="42958" stop="43043"/>
              <exon start="43608" stop="43843"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469113" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42785" stop="42868"/>
              <exon start="42958" stop="43043"/>
              <exon start="43608" stop="44080"/>
              <exon start="44161" stop="44292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E406216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42790" stop="42868"/>
              <exon start="42958" stop="43043"/>
              <exon start="43608" stop="43843"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476753" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42790" stop="42868"/>
              <exon start="42958" stop="43043"/>
              <exon start="43608" stop="43737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42801" stop="42868"/>
              <exon start="42958" stop="43043"/>
              <exon start="43608" stop="43977"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710271" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42804" stop="42868"/>
              <exon start="42958" stop="43043"/>
              <exon start="43608" stop="43837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318461" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42807" stop="42868"/>
              <exon start="42958" stop="43043"/>
              <exon start="43608" stop="44080"/>
              <exon start="44161" stop="44191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710281" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42819" stop="42868"/>
              <exon start="42958" stop="43043"/>
              <exon start="43608" stop="43688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321376" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42831" stop="42868"/>
              <exon start="42958" stop="43043"/>
              <exon start="43608" stop="43972"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404576" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42958" stop="43043"/>
              <exon start="43608" stop="43903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475489" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42964" stop="43043"/>
              <exon start="43608" stop="44080"/>
              <exon start="44161" stop="44260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E406932" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42982" stop="43043"/>
              <exon start="43608" stop="43882"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291095" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42992" stop="43043"/>
              <exon start="43608" stop="44045"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43009" stop="43043"/>
              <exon start="43608" stop="44080"/>
              <exon start="44161" stop="44168"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289176" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43608" stop="44041"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282468" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43611" stop="44080"/>
              <exon start="44161" stop="44173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43660" stop="44080"/>
              <exon start="44161" stop="44558"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43696" stop="44080"/>
              <exon start="44161" stop="44168"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329178" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43705" stop="44080"/>
              <exon start="44161" stop="44433"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279459" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43734" stop="43911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293854" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43814" stop="44080"/>
              <exon start="44161" stop="44545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371572" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43839" stop="44080"/>
              <exon start="44161" stop="44553"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284278" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43995" stop="44080"/>
              <exon start="44161" stop="44545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218631" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44011" stop="44080"/>
              <exon start="44161" stop="44566"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735021" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44033" stop="44080"/>
              <exon start="44161" stop="44578"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230008" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44034" stop="44080"/>
              <exon start="44161" stop="44555"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227231" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44037" stop="44080"/>
              <exon start="44161" stop="44555"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44041" stop="44080"/>
              <exon start="44161" stop="44555"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230554" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44202" stop="44578"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230083" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44209" stop="44577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220409" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44247" stop="44550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230771" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGATTGTGTGGCTATTACTAAGTAAACATCTTTTTTTTATGCAGTTGAGTTTGAACAACTCTGTTGTTGGAACTTCAGTTCCACCAACAGCCTTCTTTGGCAAAACCTTAAAGAAAGTGAACAACAAAGTTTCCAGCACAAACATCTCAAACAAGAACTTGAGGCTGGTTGCTCAAGAAAAAGAAATTGATGAGAAGAAACAGACTGATGGGGACAGATGGAAGGGACTTGTTAACGATGTGTCCGATGATCAACAAGACATTGCAAGGGGTAAAGGTTTGGTTGATTCGCTTTTCCAGGCTCCAACGGGTACTGGTACTCACCACGCCATCATGAATTCCTATGAATACCTCAGCCAAGGTCTTCGCCA : ATATAACTTGGACAACAAGTTGGACGGATTCTACATCGCTCCTGCTTTCATGGACAAGCTTGTTGTTCACATCACCAAGAACTTCTTAACGTTGCCCAACATCAAG : GTTCCACTTATTTTGGGTGTTTGGGGAGGAAAAGGTCAAGGTAAATCATTCCAATGTGAGCTTGTCTTCAGAAAGATGGGAATCAA : CCCAATTATGATGAGTGCTGGAGAATTAGAAAGTGGAAATGCAGGAGAGCCAGCTAAATTGATCAGGCAAAGGTACAGAGAGGCCGCGGAAATCATCAGGAAGGGAAACATGTGTTGCCTCTTCATCAACGATCTTGATGCAGGAGCCGGTAGAATGGGTGGAACTACACAATACACTGTCAACAACCAAATGGTGAATGCTACACTCATGAACATTGCTGATAACCCGACGAATGTCCAACTCCCCGGTATGTACAACAAGCAAGAGAATGCCAGGGTACCTATTATTGTCACTGGTAACGATTTCTCCACATTGTATGCACCTCTTATCCGTGATGGTCGTATGGAGAAATTCTACTGGGCACCAACTAGAGAAGACAGAATTGGTGTTTGCAAAGGTATTTTCAGGACTGACAGAGTTCCTGATGATGACATTGTCAAGATCGTCGATAGCTTCCCTGGACAATCTATTG : ATTTCTTCGGTGCTCTGAGGGCGAGAGTATACGATGATGAAGTGAGGAAATGGATTGGAAGTACTGGAATTGAACAAATTGGAGAGAAACTTTTGAACTCAAGGGATGGACCACCAACATTTGAGCAACCAAAGATGACTATCGATAAGCTCCTCGAGTACGGCAACATGCTTGTTCAAGAGCAAGAGAATGTTAAGAGAGTTCAGTTAGCTGACAAGTACCTTAAAGAAGCTGCACTTGGTGATGCAAATGCTGATTCCATCAACAATGGATCCTTCTTTGCTAGCTAGACATTTTCGTCAATTTAATCAGTTCTGTTTTTTTGCATCATTTTTGTCATGATATTGTAATGATCTTCGTGTGATGATTGTATTAGTGAATATAAGTTTGATCTTATATCCGCGCGATTTCAGTTATG</gDNA_template>
            <first_frame> R  L  C  G  Y  Y  *  V  N  I  F  F  L  C  S  *  V  *  T  T  L  L  L  E  L  Q  F  H  Q  Q  P  S  L  A  K  P  *  R  K  *  T  T  K  F  P  A  Q  T  S  Q  T  R  T  *  G  W  L  L  K  K  K  K  L  M  R  R  N  R  L  M  G  T  D  G  R  D  L  L  T  M  C  P  M  I  N  K  T  L  Q  G  V  K  V  W  L  I  R  F  S  R  L  Q  R  V  L  V  L  T  T  P  S  *  I  P  M  N  T  S  A  K  V  F  A   : N  I  T  W  T  T  S  W  T  D  S  T  S  L  L  L  S  W  T  S  L  L  F  T  S  P  R  T  S  *  R  C  P  T  S  R :   F  H  L  F  W  V  F  G  E  E  K  V  K  V  N  H  S  N  V  S  L  S  S  E  R  W  E  S   : T  Q  L  *  *  V  L  E  N  *  K  V  E  M  Q  E  S  Q  L  N  *  S  G  K  G  T  E  R  P  R  K  S  S  G  R  E  T  C  V  A  S  S  S  T  I  L  M  Q  E  P  V  E  W  V  E  L  H  N  T  L  S  T  T  K  W  *  M  L  H  S  *  T  L  L  I  T  R  R  M  S  N  S  P  V  C  T  T  S  K  R  M  P  G  Y  L  L  L  S  L  V  T  I  S  P  H  C  M  H  L  L  S  V  M  V  V  W  R  N  S  T  G  H  Q  L  E  K  T  E  L  V  F  A  K  V  F  S  G  L  T  E  F  L  M  M  T  L  S  R  S  S  I  A  S  L  D  N  L  L  :  I  S  S  V  L  *  G  R  E  Y  T  M  M  K  *  G  N  G  L  E  V  L  E  L  N  K  L  E  R  N  F  *  T  Q  G  M  D  H  Q  H  L  S  N  Q  R  *  L  S  I  S  S  S  S  T  A  T  C  L  F  K  S  K  R  M  L  R  E  F  S  *  L  T  S  T  L  K  K  L  H  L  V  M  Q  M  L  I  P  S  T  M  D  P  S  L  L  A  R  H  F  R  Q  F  N  Q  F  C  F  F  A  S  F  L  S  *  Y  C  N  D  L  R  V  M  I  V  L  V  N  I  S  L  I  L  Y  P  R  D  F  S  Y  </first_frame>
            <second_frame>  D  C  V  A  I  T  K  *  T  S  F  F  Y  A  V  E  F  E  Q  L  C  C  W  N  F  S  S  T  N  S  L  L  W  Q  N  L  K  E  S  E  Q  Q  S  F  Q  H  K  H  L  K  Q  E  L  E  A  G  C  S  R  K  R  N  *  *  E  E  T  D  *  W  G  Q  M  E  G  T  C  *  R  C  V  R  *  S  T  R  H  C  K  G  *  R  F  G  *  F  A  F  P  G  S  N  G  Y  W  Y  S  P  R  H  H  E  F  L  *  I  P  Q  P  R  S  S  P  :  I  *  L  G  Q  Q  V  G  R  I  L  H  R  S  C  F  H  G  Q  A  C  C  S  H  H  Q  E  L  L  N  V  A  Q  H  Q   : G  S  T  Y  F  G  C  L  G  R  K  R  S  R  *  I  I  P  M  *  A  C  L  Q  K  D  G  N  Q  :  P  N  Y  D  E  C  W  R  I  R  K  W  K  C  R  R  A  S  *  I  D  Q  A  K  V  Q  R  G  R  G  N  H  Q  E  G  K  H  V  L  P  L  H  Q  R  S  *  C  R  S  R  *  N  G  W  N  Y  T  I  H  C  Q  Q  P  N  G  E  C  Y  T  H  E  H  C  *  *  P  D  E  C  P  T  P  R  Y  V  Q  Q  A  R  E  C  Q  G  T  Y  Y  C  H  W  *  R  F  L  H  I  V  C  T  S  Y  P  *  W  S  Y  G  E  I  L  L  G  T  N  *  R  R  Q  N  W  C  L  Q  R  Y  F  Q  D  *  Q  S  S  *  *  *  H  C  Q  D  R  R  *  L  P  W  T  I  Y  * :   F  L  R  C  S  E  G  E  S  I  R  *  *  S  E  E  M  D  W  K  Y  W  N  *  T  N  W  R  E  T  F  E  L  K  G  W  T  T  N  I  *  A  T  K  D  D  Y  R  *  A  P  R  V  R  Q  H  A  C  S  R  A  R  E  C  *  E  S  S  V  S  *  Q  V  P  *  R  S  C  T  W  *  C  K  C  *  F  H  Q  Q  W  I  L  L  C  *  L  D  I  F  V  N  L  I  S  S  V  F  L  H  H  F  C  H  D  I  V  M  I  F  V  *  *  L  Y  *  *  I  *  V  *  S  Y  I  R  A  I  S  V  M </second_frame>
            <third_frame>   I  V  W  L  L  L  S  K  H  L  F  F  M  Q  L  S  L  N  N  S  V  V  G  T  S  V  P  P  T  A  F  F  G  K  T  L  K  K  V  N  N  K  V  S  S  T  N  I  S  N  K  N  L  R  L  V  A  Q  E  K  E  I  D  E  K  K  Q  T  D  G  D  R  W  K  G  L  V  N  D  V  S  D  D  Q  Q  D  I  A  R  G  K  G  L  V  D  S  L  F  Q  A  P  T  G  T  G  T  H  H  A  I  M  N  S  Y  E  Y  L  S  Q  G  L  R  Q :   Y  N  L  D  N  K  L  D  G  F  Y  I  A  P  A  F  M  D  K  L  V  V  H  I  T  K  N  F  L  T  L  P  N  I  K  :  V  P  L  I  L  G  V  W  G  G  K  G  Q  G  K  S  F  Q  C  E  L  V  F  R  K  M  G  I  N :   P  I  M  M  S  A  G  E  L  E  S  G  N  A  G  E  P  A  K  L  I  R  Q  R  Y  R  E  A  A  E  I  I  R  K  G  N  M  C  C  L  F  I  N  D  L  D  A  G  A  G  R  M  G  G  T  T  Q  Y  T  V  N  N  Q  M  V  N  A  T  L  M  N  I  A  D  N  P  T  N  V  Q  L  P  G  M  Y  N  K  Q  E  N  A  R  V  P  I  I  V  T  G  N  D  F  S  T  L  Y  A  P  L  I  R  D  G  R  M  E  K  F  Y  W  A  P  T  R  E  D  R  I  G  V  C  K  G  I  F  R  T  D  R  V  P  D  D  D  I  V  K  I  V  D  S  F  P  G  Q  S  I   : D  F  F  G  A  L  R  A  R  V  Y  D  D  E  V  R  K  W  I  G  S  T  G  I  E  Q  I  G  E  K  L  L  N  S  R  D  G  P  P  T  F  E  Q  P  K  M  T  I  D  K  L  L  E  Y  G  N  M  L  V  Q  E  Q  E  N  V  K  R  V  Q  L  A  D  K  Y  L  K  E  A  A  L  G  D  A  N  A  D  S  I  N  N  G  S  F  F  A  S  *  T  F  S  S  I  *  S  V  L  F  F  C  I  I  F  V  M  I  L  *  *  S  S  C  D  D  C  I  S  E  Y  K  F  D  L  I  S  A  R  F  Q  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0317H24.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42256" stop="42623"/>
                    <exon start="42763" stop="42868"/>
                    <exon start="42958" stop="43043"/>
                    <exon start="43608" stop="44080"/>
                    <exon start="44161" stop="44450"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1320</number_coding_nucleotides>
                  <number_encoded_amino_acids>440</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IVWLLLSKHLFFMQLSLNNSVVGTSVPPTAFFGKTLKKVNNKVSSTNISNKNLRLVAQEKEIDEKKQTDGDRWKGLVNDVSDDQQDIARGKGLVDSLFQAPTGTGTHHAIMNSYEYLSQGLRQYNLDNKLDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGVWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDRVPDDDIVKIVDSFPGQSIDFFGALRARVYDDEVRKWIGSTGIEQIGEKLLNSRDGPPTFEQPKMTIDKLLEYGNMLVQEQENVKRVQLADKYLKEAALGDANADSINNGSFFAS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="41523" e_stop="41647"/>
            <exon e_start="42298" e_stop="42623"/>
            <exon e_start="42763" e_stop="42868"/>
            <exon e_start="42958" e_stop="43043"/>
            <exon e_start="43608" e_stop="43754"/>
            <exon e_start="43902" e_stop="43933"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.938"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="41523" e_stop="41647" e_length="125"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.991">
            <gDNA_intron_boundary i_start="41648" i_stop="42297" i_length="650"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42298" e_stop="42623" e_length="326"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.989">
            <gDNA_intron_boundary i_start="42624" i_stop="42762" i_length="139"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="42763" e_stop="42868" e_length="106"/>
          </exon>
          <intron i_serial="3" don_prob="0.983" acc_prob="0.999">
            <gDNA_intron_boundary i_start="42869" i_stop="42957" i_length="89"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="42958" e_stop="43043" e_length="86"/>
          </exon>
          <intron i_serial="4" don_prob="0.985" acc_prob="1.000">
            <gDNA_intron_boundary i_start="43044" i_stop="43607" i_length="564"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="43608" e_stop="43754" e_length="147"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="43755" i_stop="43901" i_length="147"/>
          </intron>
          <exon e_serial="6" e_score="0.938">
            <gDNA_exon_boundary e_start="43902" e_stop="43933" e_length="32"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41523" stop="41647"/>
              <exon start="42298" stop="42623"/>
              <exon start="42763" stop="42832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313841" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41526" stop="41647"/>
              <exon start="42298" stop="42623"/>
              <exon start="42763" stop="42868"/>
              <exon start="42958" stop="43026"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332281" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41526" stop="41647"/>
              <exon start="42298" stop="42481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332282" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41527" stop="41647"/>
              <exon start="42298" stop="42623"/>
              <exon start="42763" stop="42815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41528" stop="41647"/>
              <exon start="42298" stop="42623"/>
              <exon start="42763" stop="42868"/>
              <exon start="42958" stop="43043"/>
              <exon start="43608" stop="43649"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332069" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41528" stop="41647"/>
              <exon start="42298" stop="42623"/>
              <exon start="42763" stop="42868"/>
              <exon start="42958" stop="43043"/>
              <exon start="43608" stop="43648"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332106" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41528" stop="41647"/>
              <exon start="42298" stop="42623"/>
              <exon start="42763" stop="42769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333102" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41530" stop="41647"/>
              <exon start="42298" stop="42623"/>
              <exon start="42763" stop="42868"/>
              <exon start="42958" stop="43043"/>
              <exon start="43608" stop="43670"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41530" stop="41647"/>
              <exon start="42298" stop="42623"/>
              <exon start="42763" stop="42868"/>
              <exon start="42958" stop="43023"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333566" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41533" stop="41647"/>
              <exon start="42298" stop="42623"/>
              <exon start="42763" stop="42778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41534" stop="41647"/>
              <exon start="42298" stop="42623"/>
              <exon start="42763" stop="42861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296318" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41534" stop="41647"/>
              <exon start="42298" stop="42623"/>
              <exon start="42763" stop="42861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296459" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41537" stop="41647"/>
              <exon start="42298" stop="42623"/>
              <exon start="42763" stop="42868"/>
              <exon start="42958" stop="43043"/>
              <exon start="43608" stop="43732"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257494" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41539" stop="41647"/>
              <exon start="42298" stop="42623"/>
              <exon start="42763" stop="42865"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257441" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41541" stop="41647"/>
              <exon start="42298" stop="42514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285564" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41549" stop="41647"/>
              <exon start="42298" stop="42490"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280249" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41612" stop="41647"/>
              <exon start="42298" stop="42623"/>
              <exon start="42763" stop="42868"/>
              <exon start="42958" stop="43018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330727" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41626" stop="41647"/>
              <exon start="42298" stop="42623"/>
              <exon start="42763" stop="42868"/>
              <exon start="42958" stop="43043"/>
              <exon start="43608" stop="43746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42313" stop="42623"/>
              <exon start="42763" stop="42818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698802" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42315" stop="42623"/>
              <exon start="42763" stop="42868"/>
              <exon start="42958" stop="43043"/>
              <exon start="43608" stop="43749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326153" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42406" stop="42623"/>
              <exon start="42763" stop="42868"/>
              <exon start="42958" stop="43018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280632" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42541" stop="42623"/>
              <exon start="42763" stop="42868"/>
              <exon start="42958" stop="43043"/>
              <exon start="43608" stop="43748"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408837" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42561" stop="42623"/>
              <exon start="42763" stop="42868"/>
              <exon start="42958" stop="43043"/>
              <exon start="43608" stop="43754"/>
              <exon start="43902" stop="43933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279591" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42587" stop="42623"/>
              <exon start="42763" stop="42868"/>
              <exon start="42958" stop="43043"/>
              <exon start="43608" stop="43702"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348970" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42589" stop="42623"/>
              <exon start="42763" stop="42868"/>
              <exon start="42958" stop="43043"/>
              <exon start="43608" stop="43670"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290356" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42763" stop="42868"/>
              <exon start="42958" stop="43043"/>
              <exon start="43608" stop="43647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475161" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42764" stop="42868"/>
              <exon start="42958" stop="43043"/>
              <exon start="43608" stop="43715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294035" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42790" stop="42868"/>
              <exon start="42958" stop="43043"/>
              <exon start="43608" stop="43737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42819" stop="42868"/>
              <exon start="42958" stop="43043"/>
              <exon start="43608" stop="43688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321376" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAAATATTTTCTTAACAAATTACAGAGAGTAATTTTCAAATAAACTTTTGTTATTTTGTGAGTCTTTAGAGTTAGTCAAGTACAAATGGCTACCTCCATCTCAACCATTGGAGCTGTCAACAAG : TTGAGTTTGAACAACTCTGTTGTTGGAACTTCAGTTCCACCAACAGCCTTCTTTGGCAAAACCTTAAAGAAAGTGAACAACAAAGTTTCCAGCACAAACATCTCAAACAAGAACTTGAGGCTGGTTGCTCAAGAAAAAGAAATTGATGAGAAGAAACAGACTGATGGGGACAGATGGAAGGGACTTGTTAACGATGTGTCCGATGATCAACAAGACATTGCAAGGGGTAAAGGTTTGGTTGATTCGCTTTTCCAGGCTCCAACGGGTACTGGTACTCACCACGCCATCATGAATTCCTATGAATACCTCAGCCAAGGTCTTCGCCA : ATATAACTTGGACAACAAGTTGGACGGATTCTACATCGCTCCTGCTTTCATGGACAAGCTTGTTGTTCACATCACCAAGAACTTCTTAACGTTGCCCAACATCAAG : GTTCCACTTATTTTGGGTGTTTGGGGAGGAAAAGGTCAAGGTAAATCATTCCAATGTGAGCTTGTCTTCAGAAAGATGGGAATCAA : CCCAATTATGATGAGTGCTGGAGAATTAGAAAGTGGAAATGCAGGAGAGCCAGCTAAATTGATCAGGCAAAGGTACAGAGAGGCCGCGGAAATCATCAGGAAGGGAAACATGTGTTGCCTCTTCATCAACGATCTTGATGCAGGAGC : TGGTAACGATTTCTCCACATTGTATGCACCTC</gDNA_template>
            <first_frame> *  N  I  F  L  T  N  Y  R  E  *  F  S  N  K  L  L  L  F  C  E  S  L  E  L  V  K  Y  K  W  L  P  P  S  Q  P  L  E  L  S  T  S :   *  V  *  T  T  L  L  L  E  L  Q  F  H  Q  Q  P  S  L  A  K  P  *  R  K  *  T  T  K  F  P  A  Q  T  S  Q  T  R  T  *  G  W  L  L  K  K  K  K  L  M  R  R  N  R  L  M  G  T  D  G  R  D  L  L  T  M  C  P  M  I  N  K  T  L  Q  G  V  K  V  W  L  I  R  F  S  R  L  Q  R  V  L  V  L  T  T  P  S  *  I  P  M  N  T  S  A  K  V  F  A   : N  I  T  W  T  T  S  W  T  D  S  T  S  L  L  L  S  W  T  S  L  L  F  T  S  P  R  T  S  *  R  C  P  T  S  R :   F  H  L  F  W  V  F  G  E  E  K  V  K  V  N  H  S  N  V  S  L  S  S  E  R  W  E  S   : T  Q  L  *  *  V  L  E  N  *  K  V  E  M  Q  E  S  Q  L  N  *  S  G  K  G  T  E  R  P  R  K  S  S  G  R  E  T  C  V  A  S  S  S  T  I  L  M  Q  E   : L  V  T  I  S  P  H  C  M  H  L </first_frame>
            <second_frame>  K  I  F  S  *  Q  I  T  E  S  N  F  Q  I  N  F  C  Y  F  V  S  L  *  S  *  S  S  T  N  G  Y  L  H  L  N  H  W  S  C  Q  Q   : V  E  F  E  Q  L  C  C  W  N  F  S  S  T  N  S  L  L  W  Q  N  L  K  E  S  E  Q  Q  S  F  Q  H  K  H  L  K  Q  E  L  E  A  G  C  S  R  K  R  N  *  *  E  E  T  D  *  W  G  Q  M  E  G  T  C  *  R  C  V  R  *  S  T  R  H  C  K  G  *  R  F  G  *  F  A  F  P  G  S  N  G  Y  W  Y  S  P  R  H  H  E  F  L  *  I  P  Q  P  R  S  S  P  :  I  *  L  G  Q  Q  V  G  R  I  L  H  R  S  C  F  H  G  Q  A  C  C  S  H  H  Q  E  L  L  N  V  A  Q  H  Q   : G  S  T  Y  F  G  C  L  G  R  K  R  S  R  *  I  I  P  M  *  A  C  L  Q  K  D  G  N  Q  :  P  N  Y  D  E  C  W  R  I  R  K  W  K  C  R  R  A  S  *  I  D  Q  A  K  V  Q  R  G  R  G  N  H  Q  E  G  K  H  V  L  P  L  H  Q  R  S  *  C  R  S  :  W  *  R  F  L  H  I  V  C  T   </second_frame>
            <third_frame>   K  Y  F  L  N  K  L  Q  R  V  I  F  K  *  T  F  V  I  L  *  V  F  R  V  S  Q  V  Q  M  A  T  S  I  S  T  I  G  A  V  N  K  :  L  S  L  N  N  S  V  V  G  T  S  V  P  P  T  A  F  F  G  K  T  L  K  K  V  N  N  K  V  S  S  T  N  I  S  N  K  N  L  R  L  V  A  Q  E  K  E  I  D  E  K  K  Q  T  D  G  D  R  W  K  G  L  V  N  D  V  S  D  D  Q  Q  D  I  A  R  G  K  G  L  V  D  S  L  F  Q  A  P  T  G  T  G  T  H  H  A  I  M  N  S  Y  E  Y  L  S  Q  G  L  R  Q :   Y  N  L  D  N  K  L  D  G  F  Y  I  A  P  A  F  M  D  K  L  V  V  H  I  T  K  N  F  L  T  L  P  N  I  K  :  V  P  L  I  L  G  V  W  G  G  K  G  Q  G  K  S  F  Q  C  E  L  V  F  R  K  M  G  I  N :   P  I  M  M  S  A  G  E  L  E  S  G  N  A  G  E  P  A  K  L  I  R  Q  R  Y  R  E  A  A  E  I  I  R  K  G  N  M  C  C  L  F  I  N  D  L  D  A  G  A :   G  N  D  F  S  T  L  Y  A  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0317H24.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41585" stop="41647"/>
                    <exon start="42298" stop="42623"/>
                    <exon start="42763" stop="42868"/>
                    <exon start="42958" stop="43043"/>
                    <exon start="43608" stop="43754"/>
                    <exon start="43902" stop="43932"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>759</number_coding_nucleotides>
                  <number_encoded_amino_acids>253</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VFRVSQVQMATSISTIGAVNKLSLNNSVVGTSVPPTAFFGKTLKKVNNKVSSTNISNKNLRLVAQEKEIDEKKQTDGDRWKGLVNDVSDDQQDIARGKGLVDSLFQAPTGTGTHHAIMNSYEYLSQGLRQYNLDNKLDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGVWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGNDFSTLYAP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="52685" PGL_stop="53482"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52685" e_stop="53482"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="52685" e_stop="53482" e_length="798"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52685" stop="53482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541704" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52686" stop="53200"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299840" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACCAATAGTACATTTTTTTCCAACTAAAAAGTACAACAATCTTGCTTCAAAATTCTCAAATCTTGTATACATTTCAGTCCAAATCTCACTAGATAAAATCTTGAAATCTGACCTGAGAATCTTGGGGGAAAAAAATACCCTTTACAAATGGTGTTCTTGTTTGGGTAACATTTTTCTGAGACCCCAAAAGTGCGCTTTTCATTGTAAAGCATCAATCTTTACTACTAATTGCTGAAATCTTCAGTACCCTTGAAAAAATCTTGAAATTTAATCTTGAAAATATAGCTTTACAAGTGGTGCTCTTCTTGTTTGGCTTGGCTGTGTTTCTGTAACATTTCTCGCAAACCCCCCCCAAAAGTGCTTTTTTCATTATAAAGCAACAATCTTTACTACAAATCTTGAAACTTGGCCTGAAAATCTTGAAAACCCCCTTTTGGAAATGGTTTATAGTTGTCTTGTACTACTCTGTTCATTCATTTCCTTTTCAATCCTAGCTTCATCTCAGCAACTTGATGGCTTCATTTATACAAGATTCAATGAACCAAACAATAACATTACCTTAAGTGGAGCTGCTGAGATTAGCCAAAATGGATTCATTCAACTAACCAATGAAACAAGTAGATTAATGGGGCATGCTTTCTATTCTTCACCTTTTCAGTTCAAGAACTCAACTAATGGCAGTGCTTTTTCATTTTCAACATGTTTTGCTCTTGCTATAGTCCCTGAATATCCAAAACTTGGTGGTCATGGACTTGCTTTTACTATTTCTCAGTCTAATGATTTCAGCACAGCTCTTC</gDNA_template>
            <first_frame> H  Q  *  Y  I  F  F  Q  L  K  S  T  T  I  L  L  Q  N  S  Q  I  L  Y  T  F  Q  S  K  S  H  *  I  K  S  *  N  L  T  *  E  S  W  G  K  K  I  P  F  T  N  G  V  L  V  W  V  T  F  F  *  D  P  K  S  A  L  F  I  V  K  H  Q  S  L  L  L  I  A  E  I  F  S  T  L  E  K  I  L  K  F  N  L  E  N  I  A  L  Q  V  V  L  F  L  F  G  L  A  V  F  L  *  H  F  S  Q  T  P  P  K  S  A  F  F  I  I  K  Q  Q  S  L  L  Q  I  L  K  L  G  L  K  I  L  K  T  P  F  W  K  W  F  I  V  V  L  Y  Y  S  V  H  S  F  P  F  Q  S  *  L  H  L  S  N  L  M  A  S  F  I  Q  D  S  M  N  Q  T  I  T  L  P  *  V  E  L  L  R  L  A  K  M  D  S  F  N  *  P  M  K  Q  V  D  *  W  G  M  L  S  I  L  H  L  F  S  S  R  T  Q  L  M  A  V  L  F  H  F  Q  H  V  L  L  L  L  *  S  L  N  I  Q  N  L  V  V  M  D  L  L  L  L  F  L  S  L  M  I  S  A  Q  L  F </first_frame>
            <second_frame>  T  N  S  T  F  F  S  N  *  K  V  Q  Q  S  C  F  K  I  L  K  S  C  I  H  F  S  P  N  L  T  R  *  N  L  E  I  *  P  E  N  L  G  G  K  K  Y  P  L  Q  M  V  F  L  F  G  *  H  F  S  E  T  P  K  V  R  F  S  L  *  S  I  N  L  Y  Y  *  L  L  K  S  S  V  P  L  K  K  S  *  N  L  I  L  K  I  *  L  Y  K  W  C  S  S  C  L  A  W  L  C  F  C  N  I  S  R  K  P  P  P  K  V  L  F  S  L  *  S  N  N  L  Y  Y  K  S  *  N  L  A  *  K  S  *  K  P  P  F  G  N  G  L  *  L  S  C  T  T  L  F  I  H  F  L  F  N  P  S  F  I  S  A  T  *  W  L  H  L  Y  K  I  Q  *  T  K  Q  *  H  Y  L  K  W  S  C  *  D  *  P  K  W  I  H  S  T  N  Q  *  N  K  *  I  N  G  A  C  F  L  F  F  T  F  S  V  Q  E  L  N  *  W  Q  C  F  F  I  F  N  M  F  C  S  C  Y  S  P  *  I  S  K  T  W  W  S  W  T  C  F  Y  Y  F  S  V  *  *  F  Q  H  S  S   </second_frame>
            <third_frame>   P  I  V  H  F  F  P  T  K  K  Y  N  N  L  A  S  K  F  S  N  L  V  Y  I  S  V  Q  I  S  L  D  K  I  L  K  S  D  L  R  I  L  G  E  K  N  T  L  Y  K  W  C  S  C  L  G  N  I  F  L  R  P  Q  K  C  A  F  H  C  K  A  S  I  F  T  T  N  C  *  N  L  Q  Y  P  *  K  N  L  E  I  *  S  *  K  Y  S  F  T  S  G  A  L  L  V  W  L  G  C  V  S  V  T  F  L  A  N  P  P  Q  K  C  F  F  H  Y  K  A  T  I  F  T  T  N  L  E  T  W  P  E  N  L  E  N  P  L  L  E  M  V  Y  S  C  L  V  L  L  C  S  F  I  S  F  S  I  L  A  S  S  Q  Q  L  D  G  F  I  Y  T  R  F  N  E  P  N  N  N  I  T  L  S  G  A  A  E  I  S  Q  N  G  F  I  Q  L  T  N  E  T  S  R  L  M  G  H  A  F  Y  S  S  P  F  Q  F  K  N  S  T  N  G  S  A  F  S  F  S  T  C  F  A  L  A  I  V  P  E  Y  P  K  L  G  G  H  G  L  A  F  T  I  S  Q  S  N  D  F  S  T  A  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0317H24.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52963" stop="53481"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>519</number_coding_nucleotides>
                  <number_encoded_amino_acids>173</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KYSFTSGALLVWLGCVSVTFLANPPQKCFFHYKATIFTTNLETWPENLENPLLEMVYSCLVLLCSFISFSILASSQQLDGFIYTRFNEPNNNITLSGAAEISQNGFIQLTNETSRLMGHAFYSSPFQFKNSTNGSAFSFSTCFALAIVPEYPKLGGHGLAFTISQSNDFSTAL</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0317H24.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52687" stop="52920"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PIVHFFPTKKYNNLASKFSNLVYISVQISLDKILKSDLRILGEKNTLYKWCSCLGNIFLRPQKCAFHCKASIFTTNC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="54714" PGL_stop="55281"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="54714" e_stop="55281"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="54714" e_stop="55281" e_length="568"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54714" stop="55281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541701" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGTGCGTTGTTGCTTGAAGTGGTATGTGGACGTAGACCGATTGATTCAAAGGTGGGGCCAGAGGAATTAGTTCTAGTAGACATGGTGTGGAACAAATGGAGAGAGGGGAAAATTCTTGATGTTATAGACAAGAGATTGAAAGGTGAGTTCAATGAAAGTGAAGTTGTGATGGTGTTGAAATTAGGACTAATGTGTTCAAACAATGAGGCGTCGTCTCGACCTAGCATGAGACAAGTGATGAGTTACTTGGAAGGTGAAGCTGATATACCTGATGCTCCAATGGCTCCTGGTGATTATAATGGAGGATTTGGATTCGAAGAAAACGAATGTATGCATTCTTTAGCATCTTCAAGAGGACATACATCATGTTTGGCTAATGGAAATGTTGATGGTACATTTGTTTCTGTTTCTACTGCACCACTTTCATGTTTATTTACTGATGAGTTGCCTAGGTAGTGATTGTGAAGTTGTGTGCAGATTTTTTTGAGTTTTCAGGAACATTTTCTTGATGAACACTACTTTAAAGTTCAAGTTATGAAAGTTTAAACCAATCTTTTTGGTCAAGAA</gDNA_template>
            <first_frame> W  C  V  V  A  *  S  G  M  W  T  *  T  D  *  F  K  G  G  A  R  G  I  S  S  S  R  H  G  V  E  Q  M  E  R  G  E  N  S  *  C  Y  R  Q  E  I  E  R  *  V  Q  *  K  *  S  C  D  G  V  E  I  R  T  N  V  F  K  Q  *  G  V  V  S  T  *  H  E  T  S  D  E  L  L  G  R  *  S  *  Y  T  *  C  S  N  G  S  W  *  L  *  W  R  I  W  I  R  R  K  R  M  Y  A  F  F  S  I  F  K  R  T  Y  I  M  F  G  *  W  K  C  *  W  Y  I  C  F  C  F  Y  C  T  T  F  M  F  I  Y  *  *  V  A  *  V  V  I  V  K  L  C  A  D  F  F  E  F  S  G  T  F  S  *  *  T  L  L  *  S  S  S  Y  E  S  L  N  Q  S  F  W  S  R  </first_frame>
            <second_frame>  G  A  L  L  L  E  V  V  C  G  R  R  P  I  D  S  K  V  G  P  E  E  L  V  L  V  D  M  V  W  N  K  W  R  E  G  K  I  L  D  V  I  D  K  R  L  K  G  E  F  N  E  S  E  V  V  M  V  L  K  L  G  L  M  C  S  N  N  E  A  S  S  R  P  S  M  R  Q  V  M  S  Y  L  E  G  E  A  D  I  P  D  A  P  M  A  P  G  D  Y  N  G  G  F  G  F  E  E  N  E  C  M  H  S  L  A  S  S  R  G  H  T  S  C  L  A  N  G  N  V  D  G  T  F  V  S  V  S  T  A  P  L  S  C  L  F  T  D  E  L  P  R  *  *  L  *  S  C  V  Q  I  F  L  S  F  Q  E  H  F  L  D  E  H  Y  F  K  V  Q  V  M  K  V  *  T  N  L  F  G  Q  E </second_frame>
            <third_frame>   V  R  C  C  L  K  W  Y  V  D  V  D  R  L  I  Q  R  W  G  Q  R  N  *  F  *  *  T  W  C  G  T  N  G  E  R  G  K  F  L  M  L  *  T  R  D  *  K  V  S  S  M  K  V  K  L  *  W  C  *  N  *  D  *  C  V  Q  T  M  R  R  R  L  D  L  A  *  D  K  *  *  V  T  W  K  V  K  L  I  Y  L  M  L  Q  W  L  L  V  I  I  M  E  D  L  D  S  K  K  T  N  V  C  I  L  *  H  L  Q  E  D  I  H  H  V  W  L  M  E  M  L  M  V  H  L  F  L  F  L  L  H  H  F  H  V  Y  L  L  M  S  C  L  G  S  D  C  E  V  V  C  R  F  F  *  V  F  R  N  I  F  L  M  N  T  T  L  K  F  K  L  *  K  F  K  P  I  F  L  V  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0317H24.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54715" stop="55170"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>453</number_coding_nucleotides>
                  <number_encoded_amino_acids>151</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GALLLEVVCGRRPIDSKVGPEELVLVDMVWNKWREGKILDVIDKRLKGEFNESEVVMVLKLGLMCSNNEASSRPSMRQVMSYLEGEADIPDAPMAPGDYNGGFGFEENECMHSLASSRGHTSCLANGNVDGTFVSVSTAPLSCLFTDELPR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="67479" PGL_stop="66205"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="67479" e_stop="66561"/>
            <exon e_start="66462" e_stop="66205"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.890" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="67479" e_stop="66561" e_length="919"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.890">
            <gDNA_intron_boundary i_start="66560" i_stop="66463" i_length="98"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="66462" e_stop="66205" e_length="258"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67479" stop="66763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372635" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67479" stop="67004"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289334" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67032" stop="66561"/>
              <exon start="66462" stop="66205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372634" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTCTTCGATTGATCAACGCTGCACTTAATGACGAGCTTTTCTTCAGTATTGCAAATCATACTCTCCAAATTATCGATGCTGACGGAGTTTACGTTAAACCATTTGAGACAAATACACTTATTATTACACCAGGACAAACACATAACGTTCTTCTCAAAACTAAATCTCATTTCCCTAATGCAACATTTTACATGACTGCTCGACCTTATGTGACAGGTCCTGGTACATTCGATAACTCTACAGTTGCTGGAATATTAGAGTACGAATCCGAAACAAAACTCTATTTGAAAAATCTACCGCTCTTTAAACCGTTACTACCAGCTCTGAATGACACAAATTTTGTCACCAATTTTACTAATAGATTAAGAAGTCTGGCGAGTCCTCAATACCCTGCTAATGTACCTCAAAACGTCGATAGACGTTTGTTTTTCACAGTAGGTCTTGGAACAAGCCCTTGTGATAAAAACAAAACATGTCAAGGACCTAATGGTACAAAATTCTCAGCTTCAATCAACAATGTGTCATTTGTGTTACCTACAACTGCTCTTCTTCAATCTCATTTCTTTGGTCAATCTAAAGGTGTATACAAACCTGATTTTCCTTATAGTCCTTTAAATTGGTTTAATTACACTGGGAACCCTCCAAATAACACTCTTGTTGCAAATGACACAAAACTTATGGTTTTACCATTCAACACAAGTGTGGAGTTAGTAATGCAAGATACAAGCATTCTTGGTCTTGAAAGTCATCCTCTTCATCTTCATGGATTTAATTTCTTTGTTGTTGGACAAGGATTTGGAAATTTTGACCCTAAAAAGGATCCATCAAATTTCAACCTAGTTGATCCTATTGAAAGGAATACTGTAGGTGTTCCTTCTGGTGGTTGGGTTGCTATTCGATTTCTCGCGGATAATCCAG : GAGTGTGGTTTATGCATTGTCACTTGGAAGTTCATACAAGTTGGGGATTGAAAATGGCATGGTTGGTTCAAGATGGAAAACTTCCAAATCAAAAGTTGCCTCCTCCACCAATGGATCTTCCCAAATGTTGACAATTTTATTTTGTGCAATTTTTGTACCTCCCAATTTTATTTTTTAAATTTGATTATGTGTGTGTGAGAGAGAGTCAAGGATTTTTTGTAAATTCATAACTCTTATTAATTCGAATAATGAGAACTA</gDNA_template>
            <first_frame> L  L  R  L  I  N  A  A  L  N  D  E  L  F  F  S  I  A  N  H  T  L  Q  I  I  D  A  D  G  V  Y  V  K  P  F  E  T  N  T  L  I  I  T  P  G  Q  T  H  N  V  L  L  K  T  K  S  H  F  P  N  A  T  F  Y  M  T  A  R  P  Y  V  T  G  P  G  T  F  D  N  S  T  V  A  G  I  L  E  Y  E  S  E  T  K  L  Y  L  K  N  L  P  L  F  K  P  L  L  P  A  L  N  D  T  N  F  V  T  N  F  T  N  R  L  R  S  L  A  S  P  Q  Y  P  A  N  V  P  Q  N  V  D  R  R  L  F  F  T  V  G  L  G  T  S  P  C  D  K  N  K  T  C  Q  G  P  N  G  T  K  F  S  A  S  I  N  N  V  S  F  V  L  P  T  T  A  L  L  Q  S  H  F  F  G  Q  S  K  G  V  Y  K  P  D  F  P  Y  S  P  L  N  W  F  N  Y  T  G  N  P  P  N  N  T  L  V  A  N  D  T  K  L  M  V  L  P  F  N  T  S  V  E  L  V  M  Q  D  T  S  I  L  G  L  E  S  H  P  L  H  L  H  G  F  N  F  F  V  V  G  Q  G  F  G  N  F  D  P  K  K  D  P  S  N  F  N  L  V  D  P  I  E  R  N  T  V  G  V  P  S  G  G  W  V  A  I  R  F  L  A  D  N  P   : G  V  W  F  M  H  C  H  L  E  V  H  T  S  W  G  L  K  M  A  W  L  V  Q  D  G  K  L  P  N  Q  K  L  P  P  P  P  M  D  L  P  K  C  *  Q  F  Y  F  V  Q  F  L  Y  L  P  I  L  F  F  K  F  D  Y  V  C  V  R  E  S  Q  G  F  F  V  N  S  *  L  L  L  I  R  I  M  R  T  </first_frame>
            <second_frame>  F  F  D  *  S  T  L  H  L  M  T  S  F  S  S  V  L  Q  I  I  L  S  K  L  S  M  L  T  E  F  T  L  N  H  L  R  Q  I  H  L  L  L  H  Q  D  K  H  I  T  F  F  S  K  L  N  L  I  S  L  M  Q  H  F  T  *  L  L  D  L  M  *  Q  V  L  V  H  S  I  T  L  Q  L  L  E  Y  *  S  T  N  P  K  Q  N  S  I  *  K  I  Y  R  S  L  N  R  Y  Y  Q  L  *  M  T  Q  I  L  S  P  I  L  L  I  D  *  E  V  W  R  V  L  N  T  L  L  M  Y  L  K  T  S  I  D  V  C  F  S  Q  *  V  L  E  Q  A  L  V  I  K  T  K  H  V  K  D  L  M  V  Q  N  S  Q  L  Q  S  T  M  C  H  L  C  Y  L  Q  L  L  F  F  N  L  I  S  L  V  N  L  K  V  Y  T  N  L  I  F  L  I  V  L  *  I  G  L  I  T  L  G  T  L  Q  I  T  L  L  L  Q  M  T  Q  N  L  W  F  Y  H  S  T  Q  V  W  S  *  *  C  K  I  Q  A  F  L  V  L  K  V  I  L  F  I  F  M  D  L  I  S  L  L  L  D  K  D  L  E  I  L  T  L  K  R  I  H  Q  I  S  T  *  L  I  L  L  K  G  I  L  *  V  F  L  L  V  V  G  L  L  F  D  F  S  R  I  I  Q  :  E  C  G  L  C  I  V  T  W  K  F  I  Q  V  G  D  *  K  W  H  G  W  F  K  M  E  N  F  Q  I  K  S  C  L  L  H  Q  W  I  F  P  N  V  D  N  F  I  L  C  N  F  C  T  S  Q  F  Y  F  L  N  L  I  M  C  V  *  E  R  V  K  D  F  L  *  I  H  N  S  Y  *  F  E  *  *  E  L </second_frame>
            <third_frame>   S  S  I  D  Q  R  C  T  *  *  R  A  F  L  Q  Y  C  K  S  Y  S  P  N  Y  R  C  *  R  S  L  R  *  T  I  *  D  K  Y  T  Y  Y  Y  T  R  T  N  T  *  R  S  S  Q  N  *  I  S  F  P  *  C  N  I  L  H  D  C  S  T  L  C  D  R  S  W  Y  I  R  *  L  Y  S  C  W  N  I  R  V  R  I  R  N  K  T  L  F  E  K  S  T  A  L  *  T  V  T  T  S  S  E  *  H  K  F  C  H  Q  F  Y  *  *  I  K  K  S  G  E  S  S  I  P  C  *  C  T  S  K  R  R  *  T  F  V  F  H  S  R  S  W  N  K  P  L  *  *  K  Q  N  M  S  R  T  *  W  Y  K  I  L  S  F  N  Q  Q  C  V  I  C  V  T  Y  N  C  S  S  S  I  S  F  L  W  S  I  *  R  C  I  Q  T  *  F  S  L  *  S  F  K  L  V  *  L  H  W  E  P  S  K  *  H  S  C  C  K  *  H  K  T  Y  G  F  T  I  Q  H  K  C  G  V  S  N  A  R  Y  K  H  S  W  S  *  K  S  S  S  S  S  S  W  I  *  F  L  C  C  W  T  R  I  W  K  F  *  P  *  K  G  S  I  K  F  Q  P  S  *  S  Y  *  K  E  Y  C  R  C  S  F  W  W  L  G  C  Y  S  I  S  R  G  *  S  R :   S  V  V  Y  A  L  S  L  G  S  S  Y  K  L  G  I  E  N  G  M  V  G  S  R  W  K  T  S  K  S  K  V  A  S  S  T  N  G  S  S  Q  M  L  T  I  L  F  C  A  I  F  V  P  P  N  F  I  F  *  I  *  L  C  V  C  E  R  E  S  R  I  F  C  K  F  I  T  L  I  N  S  N  N  E  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0317H24.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67479" stop="66561"/>
                    <exon start="66462" stop="66332"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1047</number_coding_nucleotides>
                  <number_encoded_amino_acids>349</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLRLINAALNDELFFSIANHTLQIIDADGVYVKPFETNTLIITPGQTHNVLLKTKSHFPNATFYMTARPYVTGPGTFDNSTVAGILEYESETKLYLKNLPLFKPLLPALNDTNFVTNFTNRLRSLASPQYPANVPQNVDRRLFFTVGLGTSPCDKNKTCQGPNGTKFSASINNVSFVLPTTALLQSHFFGQSKGVYKPDFPYSPLNWFNYTGNPPNNTLVANDTKLMVLPFNTSVELVMQDTSILGLESHPLHLHGFNFFVVGQGFGNFDPKKDPSNFNLVDPIERNTVGVPSGGWVAIRFLADNPGVWFMHCHLEVHTSWGLKMAWLVQDGKLPNQKLPPPPMDLPKC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="73109" PGL_stop="71882"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73109" e_stop="71882"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="73109" e_stop="71882" e_length="1228"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73109" stop="72716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73087" stop="72442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314509" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73087" stop="72480"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316801" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73033" stop="72271"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577642" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72963" stop="72150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706820" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72485" stop="71882"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273825" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAGTTTCACTTGAAGCCATAGAAAATTTCAGATTCCTTCACACATCCTCTCTCTCTGTCCCCAAAACTCAAACACTTTCAATTCACAATGGAATTACTTCTCTTCTTCTTCCTCACACCATTTCTCTTCTTTATTAACTGTTCTTCCATTACTCAAATTTCTTCACCATTGTTGATTTTACCCCTAAAAACTCAACAAATCTCATCTGGGTTTTCATCTCCAAATAAACTCCCATTTACTCACAATGTTACTCTTACTGTTTCCCTTTCAGTTGGTACACCTCCACAGAATGTAACAATGGTGCTCGATACTGGTAGTGAACTTTCATGGCTACATTCAAATTCAACCCGAATCAAACAACCCATTTTCAACCCCAACCGTTCACTCTCCTACAGACCCGTTTCTTGCTCCGAACCCATTTGCACGACCCGAACCCAAGATTTTTCCATACCAGCTTCTTGTGATTCGAAGAATTTCTGTCATGCTGTGCTTTCTTACGCAGATGCTTCGTCTTCAGAAGGGAATTTAGCTATGGATACGTTTACGATTGGCGGGTCGAATTTTACGGGTACGATATTCGGGTCAATGGATTCGGGTTTCAGTAGTGATTCGGATGAAGATGAAAAGACAACCGGGTTAATGGGTATGAACCGTGGATCTCTATCTTTTGTTTCACAAATGGGGTTCAAAAAGTTTTCTTATTGCATTTCGAGCCTTGATTTTTCTGGTATTTTACTTTTCGGTGAATCGAATTTTACTTGGATTTTACCGTTAAATTACACCCCGTTAGTCGAAATTTCGCTTCCGTTACCTTATTTCGATCGAGTTGCGTATACTATTAAACTTGAAGGTATTAAAGTTTCGAATAAATTACTTCCGATACCTGAATCCGTATTTATACCCTATCATACTGGGGCGGGTCAAACCATGGTTGATTCGGGTACCCAATTTACATTCCTATTAGGTCAAGCTTACACTATACTAAGGAGTGAGTTTTTGAATCAAACAATGACAATCCTTAAGGTCCTTGAGGATCAAGATTTTGTTTTTCAAGGTGCAATGGACTTGTGTTATCGAGTACCTATTAATCAAACGTCGTTACCTAAGTTACCATCGGTTAGTTTAGTGTTTCGAGGAGCAGAAATAACTGTTTCAGGAGAACGATTGTTGTATCGAGTACCTGGTGAAATTCGAGGGAAAGATTCGATACATTGTTTTACTTTTGGA</gDNA_template>
            <first_frame> Q  V  S  L  E  A  I  E  N  F  R  F  L  H  T  S  S  L  S  V  P  K  T  Q  T  L  S  I  H  N  G  I  T  S  L  L  L  P  H  T  I  S  L  L  Y  *  L  F  F  H  Y  S  N  F  F  T  I  V  D  F  T  P  K  N  S  T  N  L  I  W  V  F  I  S  K  *  T  P  I  Y  S  Q  C  Y  S  Y  C  F  P  F  S  W  Y  T  S  T  E  C  N  N  G  A  R  Y  W  *  *  T  F  M  A  T  F  K  F  N  P  N  Q  T  T  H  F  Q  P  Q  P  F  T  L  L  Q  T  R  F  L  L  R  T  H  L  H  D  P  N  P  R  F  F  H  T  S  F  L  *  F  E  E  F  L  S  C  C  A  F  L  R  R  C  F  V  F  R  R  E  F  S  Y  G  Y  V  Y  D  W  R  V  E  F  Y  G  Y  D  I  R  V  N  G  F  G  F  Q  *  *  F  G  *  R  *  K  D  N  R  V  N  G  Y  E  P  W  I  S  I  F  C  F  T  N  G  V  Q  K  V  F  L  L  H  F  E  P  *  F  F  W  Y  F  T  F  R  *  I  E  F  Y  L  D  F  T  V  K  L  H  P  V  S  R  N  F  A  S  V  T  L  F  R  S  S  C  V  Y  Y  *  T  *  R  Y  *  S  F  E  *  I  T  S  D  T  *  I  R  I  Y  T  L  S  Y  W  G  G  S  N  H  G  *  F  G  Y  P  I  Y  I  P  I  R  S  S  L  H  Y  T  K  E  *  V  F  E  S  N  N  D  N  P  *  G  P  *  G  S  R  F  C  F  S  R  C  N  G  L  V  L  S  S  T  Y  *  S  N  V  V  T  *  V  T  I  G  *  F  S  V  S  R  S  R  N  N  C  F  R  R  T  I  V  V  S  S  T  W  *  N  S  R  E  R  F  D  T  L  F  Y  F  W  </first_frame>
            <second_frame>  K  F  H  L  K  P  *  K  I  S  D  S  F  T  H  P  L  S  L  S  P  K  L  K  H  F  Q  F  T  M  E  L  L  L  F  F  F  L  T  P  F  L  F  F  I  N  C  S  S  I  T  Q  I  S  S  P  L  L  I  L  P  L  K  T  Q  Q  I  S  S  G  F  S  S  P  N  K  L  P  F  T  H  N  V  T  L  T  V  S  L  S  V  G  T  P  P  Q  N  V  T  M  V  L  D  T  G  S  E  L  S  W  L  H  S  N  S  T  R  I  K  Q  P  I  F  N  P  N  R  S  L  S  Y  R  P  V  S  C  S  E  P  I  C  T  T  R  T  Q  D  F  S  I  P  A  S  C  D  S  K  N  F  C  H  A  V  L  S  Y  A  D  A  S  S  S  E  G  N  L  A  M  D  T  F  T  I  G  G  S  N  F  T  G  T  I  F  G  S  M  D  S  G  F  S  S  D  S  D  E  D  E  K  T  T  G  L  M  G  M  N  R  G  S  L  S  F  V  S  Q  M  G  F  K  K  F  S  Y  C  I  S  S  L  D  F  S  G  I  L  L  F  G  E  S  N  F  T  W  I  L  P  L  N  Y  T  P  L  V  E  I  S  L  P  L  P  Y  F  D  R  V  A  Y  T  I  K  L  E  G  I  K  V  S  N  K  L  L  P  I  P  E  S  V  F  I  P  Y  H  T  G  A  G  Q  T  M  V  D  S  G  T  Q  F  T  F  L  L  G  Q  A  Y  T  I  L  R  S  E  F  L  N  Q  T  M  T  I  L  K  V  L  E  D  Q  D  F  V  F  Q  G  A  M  D  L  C  Y  R  V  P  I  N  Q  T  S  L  P  K  L  P  S  V  S  L  V  F  R  G  A  E  I  T  V  S  G  E  R  L  L  Y  R  V  P  G  E  I  R  G  K  D  S  I  H  C  F  T  F  G </second_frame>
            <third_frame>   S  F  T  *  S  H  R  K  F  Q  I  P  S  H  I  L  S  L  C  P  Q  N  S  N  T  F  N  S  Q  W  N  Y  F  S  S  S  S  S  H  H  F  S  S  L  L  T  V  L  P  L  L  K  F  L  H  H  C  *  F  Y  P  *  K  L  N  K  S  H  L  G  F  H  L  Q  I  N  S  H  L  L  T  M  L  L  L  L  F  P  F  Q  L  V  H  L  H  R  M  *  Q  W  C  S  I  L  V  V  N  F  H  G  Y  I  Q  I  Q  P  E  S  N  N  P  F  S  T  P  T  V  H  S  P  T  D  P  F  L  A  P  N  P  F  A  R  P  E  P  K  I  F  P  Y  Q  L  L  V  I  R  R  I  S  V  M  L  C  F  L  T  Q  M  L  R  L  Q  K  G  I  *  L  W  I  R  L  R  L  A  G  R  I  L  R  V  R  Y  S  G  Q  W  I  R  V  S  V  V  I  R  M  K  M  K  R  Q  P  G  *  W  V  *  T  V  D  L  Y  L  L  F  H  K  W  G  S  K  S  F  L  I  A  F  R  A  L  I  F  L  V  F  Y  F  S  V  N  R  I  L  L  G  F  Y  R  *  I  T  P  R  *  S  K  F  R  F  R  Y  L  I  S  I  E  L  R  I  L  L  N  L  K  V  L  K  F  R  I  N  Y  F  R  Y  L  N  P  Y  L  Y  P  I  I  L  G  R  V  K  P  W  L  I  R  V  P  N  L  H  S  Y  *  V  K  L  T  L  Y  *  G  V  S  F  *  I  K  Q  *  Q  S  L  R  S  L  R  I  K  I  L  F  F  K  V  Q  W  T  C  V  I  E  Y  L  L  I  K  R  R  Y  L  S  Y  H  R  L  V  *  C  F  E  E  Q  K  *  L  F  Q  E  N  D  C  C  I  E  Y  L  V  K  F  E  G  K  I  R  Y  I  V  L  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0317H24.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73087" stop="71882"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1206</number_coding_nucleotides>
                  <number_encoded_amino_acids>402</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KISDSFTHPLSLSPKLKHFQFTMELLLFFFLTPFLFFINCSSITQISSPLLILPLKTQQISSGFSSPNKLPFTHNVTLTVSLSVGTPPQNVTMVLDTGSELSWLHSNSTRIKQPIFNPNRSLSYRPVSCSEPICTTRTQDFSIPASCDSKNFCHAVLSYADASSSEGNLAMDTFTIGGSNFTGTIFGSMDSGFSSDSDEDEKTTGLMGMNRGSLSFVSQMGFKKFSYCISSLDFSGILLFGESNFTWILPLNYTPLVEISLPLPYFDRVAYTIKLEGIKVSNKLLPIPESVFIPYHTGAGQTMVDSGTQFTFLLGQAYTILRSEFLNQTMTILKVLEDQDFVFQGAMDLCYRVPINQTSLPKLPSVSLVFRGAEITVSGERLLYRVPGEIRGKDSIHCFTFG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="79407" PGL_stop="87142"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="79407" e_stop="80088"/>
            <exon e_start="80744" e_stop="80886"/>
            <exon e_start="80976" e_stop="81026"/>
            <exon e_start="83113" e_stop="83334"/>
            <exon e_start="83455" e_stop="83557"/>
            <exon e_start="83680" e_stop="84546"/>
            <exon e_start="87126" e_stop="87142"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="0.999"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.700" acc_prob="0.925" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.179" e_score="1.000"/>
          <exon-only e_score="0.647"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="79407" e_stop="80088" e_length="682"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="80089" i_stop="80743" i_length="655"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="80744" e_stop="80886" e_length="143"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="80887" i_stop="80975" i_length="89"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="80976" e_stop="81026" e_length="51"/>
          </exon>
          <intron i_serial="3" don_prob="0.985" acc_prob="0.999">
            <gDNA_intron_boundary i_start="81027" i_stop="83112" i_length="2086"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="83113" e_stop="83334" e_length="222"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="83335" i_stop="83454" i_length="120"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="83455" e_stop="83557" e_length="103"/>
          </exon>
          <intron i_serial="5" don_prob="0.700" acc_prob="0.925">
            <gDNA_intron_boundary i_start="83558" i_stop="83679" i_length="122"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="83680" e_stop="84546" e_length="867"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.179">
            <gDNA_intron_boundary i_start="84547" i_stop="87125" i_length="2579"/>
          </intron>
          <exon e_serial="7" e_score="0.647">
            <gDNA_exon_boundary e_start="87126" e_stop="87142" e_length="17"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79407" stop="80078"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396524" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79407" stop="80029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391663" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79408" stop="79842"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247286" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79414" stop="79873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302012" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79455" stop="79941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255789" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79483" stop="80065"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251023" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79483" stop="80007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331585" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79637" stop="80088"/>
              <exon start="80744" stop="80886"/>
              <exon start="80976" stop="81026"/>
              <exon start="83113" stop="83334"/>
              <exon start="83455" stop="83557"/>
              <exon start="83680" stop="84546"/>
              <exon start="87126" stop="87142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746293" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79638" stop="80088"/>
              <exon start="80744" stop="80825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269527" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79695" stop="79931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79771" stop="80088"/>
              <exon start="80744" stop="80886"/>
              <exon start="80976" stop="81026"/>
              <exon start="83113" stop="83334"/>
              <exon start="83455" stop="83498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262911" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79771" stop="80088"/>
              <exon start="80744" stop="80886"/>
              <exon start="80976" stop="81026"/>
              <exon start="83113" stop="83167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79884" stop="80088"/>
              <exon start="80744" stop="80886"/>
              <exon start="80976" stop="81026"/>
              <exon start="83113" stop="83334"/>
              <exon start="83455" stop="83507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699106" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79900" stop="80088"/>
              <exon start="80744" stop="80886"/>
              <exon start="80976" stop="81026"/>
              <exon start="83113" stop="83334"/>
              <exon start="83455" stop="83557"/>
              <exon start="83680" stop="83744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79918" stop="80088"/>
              <exon start="80744" stop="80886"/>
              <exon start="80976" stop="81026"/>
              <exon start="83113" stop="83334"/>
              <exon start="83455" stop="83557"/>
              <exon start="83680" stop="83709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561892" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79921" stop="80088"/>
              <exon start="80744" stop="80886"/>
              <exon start="80976" stop="81020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E562209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79930" stop="80088"/>
              <exon start="80744" stop="80886"/>
              <exon start="80976" stop="81026"/>
              <exon start="83113" stop="83334"/>
              <exon start="83455" stop="83557"/>
              <exon start="83680" stop="83871"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708178" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79930" stop="80088"/>
              <exon start="80744" stop="80886"/>
              <exon start="80976" stop="81026"/>
              <exon start="83113" stop="83334"/>
              <exon start="83455" stop="83512"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439702" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79945" stop="80088"/>
              <exon start="80744" stop="80886"/>
              <exon start="80976" stop="80985"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79966" stop="80088"/>
              <exon start="80744" stop="80886"/>
              <exon start="80976" stop="81026"/>
              <exon start="83113" stop="83334"/>
              <exon start="83455" stop="83496"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416841" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79974" stop="80088"/>
              <exon start="80744" stop="80886"/>
              <exon start="80976" stop="81026"/>
              <exon start="83113" stop="83334"/>
              <exon start="83455" stop="83557"/>
              <exon start="83680" stop="83712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479058" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79976" stop="80088"/>
              <exon start="80744" stop="80886"/>
              <exon start="80976" stop="81026"/>
              <exon start="83113" stop="83334"/>
              <exon start="83455" stop="83557"/>
              <exon start="83680" stop="83749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455479" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79976" stop="80088"/>
              <exon start="80744" stop="80886"/>
              <exon start="80976" stop="81026"/>
              <exon start="83113" stop="83334"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475316" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79988" stop="80088"/>
              <exon start="80744" stop="80886"/>
              <exon start="80976" stop="81026"/>
              <exon start="83113" stop="83334"/>
              <exon start="83455" stop="83513"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711060" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79989" stop="80088"/>
              <exon start="80744" stop="80886"/>
              <exon start="80976" stop="81026"/>
              <exon start="83113" stop="83334"/>
              <exon start="83455" stop="83532"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E569365" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79990" stop="80088"/>
              <exon start="80744" stop="80886"/>
              <exon start="80976" stop="81026"/>
              <exon start="83113" stop="83203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79999" stop="80088"/>
              <exon start="80744" stop="80886"/>
              <exon start="80976" stop="81026"/>
              <exon start="83113" stop="83334"/>
              <exon start="83455" stop="83486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256610" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80007" stop="80088"/>
              <exon start="80744" stop="80886"/>
              <exon start="80976" stop="81026"/>
              <exon start="83113" stop="83203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80018" stop="80088"/>
              <exon start="80744" stop="80886"/>
              <exon start="80976" stop="81026"/>
              <exon start="83113" stop="83334"/>
              <exon start="83455" stop="83557"/>
              <exon start="83680" stop="83708"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459738" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80027" stop="80088"/>
              <exon start="80744" stop="80886"/>
              <exon start="80976" stop="81026"/>
              <exon start="83113" stop="83334"/>
              <exon start="83455" stop="83557"/>
              <exon start="83680" stop="83793"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479173" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80764" stop="80886"/>
              <exon start="80976" stop="81026"/>
              <exon start="83113" stop="83334"/>
              <exon start="83455" stop="83557"/>
              <exon start="83680" stop="83836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263799" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80764" stop="80886"/>
              <exon start="80976" stop="81026"/>
              <exon start="83113" stop="83334"/>
              <exon start="83455" stop="83511"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262078" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80798" stop="80886"/>
              <exon start="80976" stop="81026"/>
              <exon start="83113" stop="83334"/>
              <exon start="83455" stop="83557"/>
              <exon start="83680" stop="83756"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715830" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80798" stop="80886"/>
              <exon start="80976" stop="81026"/>
              <exon start="83113" stop="83334"/>
              <exon start="83455" stop="83557"/>
              <exon start="83680" stop="83756"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716910" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80865" stop="80886"/>
              <exon start="80976" stop="81026"/>
              <exon start="83113" stop="83334"/>
              <exon start="83455" stop="83557"/>
              <exon start="83680" stop="83903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261471" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80987" stop="81026"/>
              <exon start="83113" stop="83334"/>
              <exon start="83455" stop="83557"/>
              <exon start="83680" stop="84176"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700866" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83118" stop="83334"/>
              <exon start="83455" stop="83557"/>
              <exon start="83680" stop="84013"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83134" stop="83334"/>
              <exon start="83455" stop="83557"/>
              <exon start="83680" stop="84284"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705702" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83170" stop="83334"/>
              <exon start="83455" stop="83557"/>
              <exon start="83680" stop="84278"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709042" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83192" stop="83334"/>
              <exon start="83455" stop="83557"/>
              <exon start="83680" stop="83715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263131" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83206" stop="83334"/>
              <exon start="83455" stop="83557"/>
              <exon start="83680" stop="84311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704460" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83213" stop="83334"/>
              <exon start="83455" stop="83557"/>
              <exon start="83680" stop="83916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206650" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83301" stop="83334"/>
              <exon start="83455" stop="83557"/>
              <exon start="83680" stop="84148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688251" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83301" stop="83334"/>
              <exon start="83455" stop="83557"/>
              <exon start="83680" stop="84143"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83302" stop="83334"/>
              <exon start="83455" stop="83557"/>
              <exon start="83680" stop="84154"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273345" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83302" stop="83334"/>
              <exon start="83455" stop="83557"/>
              <exon start="83680" stop="83821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273425" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83768" stop="84491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391662" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83813" stop="84546"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717297" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83834" stop="84491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392031" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83881" stop="84309"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272174" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCCTCTTCAGCTCTTCTTCCTCTTATCTTCTCCTCTTCCTCTTCTATTCCAACTACTCTTCAGCTCCAACCACTCTTGTCTTCAGCAGCGCCGCCAGGCGCCAGGCGCCAGCCGCCGTCCACAACAAGGGAAGCAGCAGTAGCCGCGACAGCAGCACAGCAGCAGCCAGCCACAGACAGCAGCACAGCAGCAACCAGCCGCGACAGCACTCAGCAGCAGCCAGCCGCCGACCGTGCAGCAGTTTGGTCCATTAAAAAACCGAAATAAAAAATCGAATCGAATTAATAAAAATCAAACCGAAATATTTCGATTCGGTATTCGATACGCAATTTACAAAAACCGAAAACCGAAAAAACCGAAAAAAACCCGAACCGAACCGAAATACCGAATGCCCACCACTATATTAAATTTGAAGTAATTATATACCCATCTCGATTTTAATTTAATATAAACAAATAATAAACCCTTCTCCAAGATAATAAATCCCTTCTTCTCCAAAGTTCCAGTACCTTCTAGTTTCTACAAAATCTCTTCAATAAATTCTTCTTCTTCCCTAAACAAAACACCGAAAAATCTAAGTAAGAAATCAAAAATGGCGAAAGAGGGACCTAATTGGGATGGTTTATTGAAATGGAGTCTATCTCATGCTGATGGTACCAAACCTCCTCCTCGCAATTTGAG : TGAGGAGGACAGGAGGTGGTTCATGGAGGCTATGCAAGCTCAAACTGTTGATGTGATTAAGAGAATGAAGGAGATTACACTTGTCATGCAAACACCAGAGCAGGTTTTGGAATCACAGGGGGTGACTTCCCAAGATATTGAAG : ATATGCTGGATGAGCTACAAGAACATGTCGAATCAATTGATATGGCTAATG : ATCTGAATTCAATTGGTGGATTGGTGCCTCTTCTTGGTTACTTAAAGAACTCCCATGCAAACATTAGAGCCAAAGCGGCAGAAGTCGTAAGTACAATTGTTCAGAACAACCCGAGGAGCCAACAACTGGTAATGGAAGCTAATGGCCTAGAACCCCTTCTGTCAAATTTTACCTCAGATCCTGATGTTACTGCCCGCACTAAAGCTCTTGGTGCAATTTCAT : CTTTAATTAGGCACAACAAGCCTGCCATTGCTGCATTTCGTCTTGCAAATGGTTATGCAGGTTTAAGAGATGCTTTGAGTTCTGAGAGTGTGAGATTTCAGAG : GAAAGCCCTTAACTTGATCCATTATTTACTACATGAGAATCATTCAGACTGCAATGTAGTGACTGAGCTAGGATTTCCTCGAGTTATGATGCATCTAGCCTCTAGTGATGATGGAGAAGTGCGAGAGGGTGCCCTACAAGGTCTTCTTGACCTTGCCCAAGACAAGACAGGAGAGGTTGCTGGCTCCTCATCGACTGAAGAAAATGAGAAACTCAAGCAAATACTCCAGGAGCGAATTAAGGGGATTTCCTCTATGTCACCTGAAGATCTTGGTGCTGCTAAAGAAGAGAGGCAACTTGTAGATTCCCTCTGGAATACTTGCTACAATGAACCTTCCTCTCTTAGAGAGAAAGGCCTAGTTGTTCTCCCCGGAGAGGATGCATTACCACCTGATGTTGCTAGCAAGCATTTTGAACCTCCTCTGAGAGCTTGGGCTGCAAATAGGAACGAGGATACTAAGCCAAGTAACGAAAAGAAACAGGCTCCCTTATTGCTAGGCCTAGGTCCACCTACACAGGGTCCTCCTGTGCAGAATAGCTCTAGTGGAGCCATGTCTGGGGAAGAAAATAGAGACACCTCTGCATGATGTACATTTTTGGGCAATACCAGGTTATTCAGCTTAATATATCTTTGTGATATTACAAATAACACTGTGTTAAATGCCAAGTGTTTTCTGGATAATTTTGAGTCTTTCCTCTCTGTCATGTCACACTTCCAATTTTTCTTCATTTCCTTTGTTGTTTAACCAAATTCTCAAGTGTAATGCTGTATTTGTTTTGGTTATAGTATACGTACAACATTGACTGTTGAATCTGTTTTTATTTTGGTGAATTTTATCACAATATGAAAATCTGAACTATTACTAGT : AATATGAAAAGATAATA</gDNA_template>
            <first_frame> L  L  F  S  S  S  S  S  Y  L  L  L  F  L  F  Y  S  N  Y  S  S  A  P  T  T  L  V  F  S  S  A  A  R  R  Q  A  P  A  A  V  H  N  K  G  S  S  S  S  R  D  S  S  T  A  A  A  S  H  R  Q  Q  H  S  S  N  Q  P  R  Q  H  S  A  A  A  S  R  R  P  C  S  S  L  V  H  *  K  T  E  I  K  N  R  I  E  L  I  K  I  K  P  K  Y  F  D  S  V  F  D  T  Q  F  T  K  T  E  N  R  K  N  R  K  K  P  E  P  N  R  N  T  E  C  P  P  L  Y  *  I  *  S  N  Y  I  P  I  S  I  L  I  *  Y  K  Q  I  I  N  P  S  P  R  *  *  I  P  S  S  P  K  F  Q  Y  L  L  V  S  T  K  S  L  Q  *  I  L  L  L  P  *  T  K  H  R  K  I  *  V  R  N  Q  K  W  R  K  R  D  L  I  G  M  V  Y  *  N  G  V  Y  L  M  L  M  V  P  N  L  L  L  A  I  *   : V  R  R  T  G  G  G  S  W  R  L  C  K  L  K  L  L  M  *  L  R  E  *  R  R  L  H  L  S  C  K  H  Q  S  R  F  W  N  H  R  G  *  L  P  K  I  L  K  :  I  C  W  M  S  Y  K  N  M  S  N  Q  L  I  W  L  M  :  I  *  I  Q  L  V  D  W  C  L  F  L  V  T  *  R  T  P  M  Q  T  L  E  P  K  R  Q  K  S  *  V  Q  L  F  R  T  T  R  G  A  N  N  W  *  W  K  L  M  A  *  N  P  F  C  Q  I  L  P  Q  I  L  M  L  L  P  A  L  K  L  L  V  Q  F  H  :  L  *  L  G  T  T  S  L  P  L  L  H  F  V  L  Q  M  V  M  Q  V  *  E  M  L  *  V  L  R  V  *  D  F  R   : G  K  P  L  T  *  S  I  I  Y  Y  M  R  I  I  Q  T  A  M  *  *  L  S  *  D  F  L  E  L  *  C  I  *  P  L  V  M  M  E  K  C  E  R  V  P  Y  K  V  F  L  T  L  P  K  T  R  Q  E  R  L  L  A  P  H  R  L  K  K  M  R  N  S  S  K  Y  S  R  S  E  L  R  G  F  P  L  C  H  L  K  I  L  V  L  L  K  K  R  G  N  L  *  I  P  S  G  I  L  A  T  M  N  L  P  L  L  E  R  K  A  *  L  F  S  P  E  R  M  H  Y  H  L  M  L  L  A  S  I  L  N  L  L  *  E  L  G  L  Q  I  G  T  R  I  L  S  Q  V  T  K  R  N  R  L  P  Y  C  *  A  *  V  H  L  H  R  V  L  L  C  R  I  A  L  V  E  P  C  L  G  K  K  I  E  T  P  L  H  D  V  H  F  W  A  I  P  G  Y  S  A  *  Y  I  F  V  I  L  Q  I  T  L  C  *  M  P  S  V  F  W  I  I  L  S  L  S  S  L  S  C  H  T  S  N  F  S  S  F  P  L  L  F  N  Q  I  L  K  C  N  A  V  F  V  L  V  I  V  Y  V  Q  H  *  L  L  N  L  F  L  F  W  *  I  L  S  Q  Y  E  N  L  N  Y  Y  *   : *  Y  E  K  I  I </first_frame>
            <second_frame>  S  S  S  A  L  L  P  L  I  F  S  S  S  S  S  I  P  T  T  L  Q  L  Q  P  L  L  S  S  A  A  P  P  G  A  R  R  Q  P  P  S  T  T  R  E  A  A  V  A  A  T  A  A  Q  Q  Q  P  A  T  D  S  S  T  A  A  T  S  R  D  S  T  Q  Q  Q  P  A  A  D  R  A  A  V  W  S  I  K  K  P  K  *  K  I  E  S  N  *  *  K  S  N  R  N  I  S  I  R  Y  S  I  R  N  L  Q  K  P  K  T  E  K  T  E  K  N  P  N  R  T  E  I  P  N  A  H  H  Y  I  K  F  E  V  I  I  Y  P  S  R  F  *  F  N  I  N  K  *  *  T  L  L  Q  D  N  K  S  L  L  L  Q  S  S  S  T  F  *  F  L  Q  N  L  F  N  K  F  F  F  F  P  K  Q  N  T  E  K  S  K  *  E  I  K  N  G  E  R  G  T  *  L  G  W  F  I  E  M  E  S  I  S  C  *  W  Y  Q  T  S  S  S  Q  F  E  :  *  G  G  Q  E  V  V  H  G  G  Y  A  S  S  N  C  *  C  D  *  E  N  E  G  D  Y  T  C  H  A  N  T  R  A  G  F  G  I  T  G  G  D  F  P  R  Y  *  R :   Y  A  G  *  A  T  R  T  C  R  I  N  *  Y  G  *  * :   S  E  F  N  W  W  I  G  A  S  S  W  L  L  K  E  L  P  C  K  H  *  S  Q  S  G  R  S  R  K  Y  N  C  S  E  Q  P  E  E  P  T  T  G  N  G  S  *  W  P  R  T  P  S  V  K  F  Y  L  R  S  *  C  Y  C  P  H  *  S  S  W  C  N  F  I :   F  N  *  A  Q  Q  A  C  H  C  C  I  S  S  C  K  W  L  C  R  F  K  R  C  F  E  F  *  E  C  E  I  S  E  :  E  S  P  *  L  D  P  L  F  T  T  *  E  S  F  R  L  Q  C  S  D  *  A  R  I  S  S  S  Y  D  A  S  S  L  *  *  *  W  R  S  A  R  G  C  P  T  R  S  S  *  P  C  P  R  Q  D  R  R  G  C  W  L  L  I  D  *  R  K  *  E  T  Q  A  N  T  P  G  A  N  *  G  D  F  L  Y  V  T  *  R  S  W  C  C  *  R  R  E  A  T  C  R  F  P  L  E  Y  L  L  Q  *  T  F  L  S  *  R  E  R  P  S  C  S  P  R  R  G  C  I  T  T  *  C  C  *  Q  A  F  *  T  S  S  E  S  L  G  C  K  *  E  R  G  Y  *  A  K  *  R  K  E  T  G  S  L  I  A  R  P  R  S  T  Y  T  G  S  S  C  A  E  *  L  *  W  S  H  V  W  G  R  K  *  R  H  L  C  M  M  Y  I  F  G  Q  Y  Q  V  I  Q  L  N  I  S  L  *  Y  Y  K  *  H  C  V  K  C  Q  V  F  S  G  *  F  *  V  F  P  L  C  H  V  T  L  P  I  F  L  H  F  L  C  C  L  T  K  F  S  S  V  M  L  Y  L  F  W  L  *  Y  T  Y  N  I  D  C  *  I  C  F  Y  F  G  E  F  Y  H  N  M  K  I  *  T  I  T  S  :  N  M  K  R  *   </second_frame>
            <third_frame>   P  L  Q  L  F  F  L  L  S  S  P  L  P  L  L  F  Q  L  L  F  S  S  N  H  S  C  L  Q  Q  R  R  Q  A  P  G  A  S  R  R  P  Q  Q  G  K  Q  Q  *  P  R  Q  Q  H  S  S  S  Q  P  Q  T  A  A  Q  Q  Q  P  A  A  T  A  L  S  S  S  Q  P  P  T  V  Q  Q  F  G  P  L  K  N  R  N  K  K  S  N  R  I  N  K  N  Q  T  E  I  F  R  F  G  I  R  Y  A  I  Y  K  N  R  K  P  K  K  P  K  K  T  R  T  E  P  K  Y  R  M  P  T  T  I  L  N  L  K  *  L  Y  T  H  L  D  F  N  L  I  *  T  N  N  K  P  F  S  K  I  I  N  P  F  F  S  K  V  P  V  P  S  S  F  Y  K  I  S  S  I  N  S  S  S  S  L  N  K  T  P  K  N  L  S  K  K  S  K  M  A  K  E  G  P  N  W  D  G  L  L  K  W  S  L  S  H  A  D  G  T  K  P  P  P  R  N  L  S :   E  E  D  R  R  W  F  M  E  A  M  Q  A  Q  T  V  D  V  I  K  R  M  K  E  I  T  L  V  M  Q  T  P  E  Q  V  L  E  S  Q  G  V  T  S  Q  D  I  E   : D  M  L  D  E  L  Q  E  H  V  E  S  I  D  M  A  N   : D  L  N  S  I  G  G  L  V  P  L  L  G  Y  L  K  N  S  H  A  N  I  R  A  K  A  A  E  V  V  S  T  I  V  Q  N  N  P  R  S  Q  Q  L  V  M  E  A  N  G  L  E  P  L  L  S  N  F  T  S  D  P  D  V  T  A  R  T  K  A  L  G  A  I  S   : S  L  I  R  H  N  K  P  A  I  A  A  F  R  L  A  N  G  Y  A  G  L  R  D  A  L  S  S  E  S  V  R  F  Q  R :   K  A  L  N  L  I  H  Y  L  L  H  E  N  H  S  D  C  N  V  V  T  E  L  G  F  P  R  V  M  M  H  L  A  S  S  D  D  G  E  V  R  E  G  A  L  Q  G  L  L  D  L  A  Q  D  K  T  G  E  V  A  G  S  S  S  T  E  E  N  E  K  L  K  Q  I  L  Q  E  R  I  K  G  I  S  S  M  S  P  E  D  L  G  A  A  K  E  E  R  Q  L  V  D  S  L  W  N  T  C  Y  N  E  P  S  S  L  R  E  K  G  L  V  V  L  P  G  E  D  A  L  P  P  D  V  A  S  K  H  F  E  P  P  L  R  A  W  A  A  N  R  N  E  D  T  K  P  S  N  E  K  K  Q  A  P  L  L  L  G  L  G  P  P  T  Q  G  P  P  V  Q  N  S  S  S  G  A  M  S  G  E  E  N  R  D  T  S  A  *  C  T  F  L  G  N  T  R  L  F  S  L  I  Y  L  C  D  I  T  N  N  T  V  L  N  A  K  C  F  L  D  N  F  E  S  F  L  S  V  M  S  H  F  Q  F  F  F  I  S  F  V  V  *  P  N  S  Q  V  *  C  C  I  C  F  G  Y  S  I  R  T  T  L  T  V  E  S  V  F  I  L  V  N  F  I  T  I  *  K  S  E  L  L  L  V :   I  *  K  D  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0317H24.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79859" stop="80088"/>
                    <exon start="80744" stop="80886"/>
                    <exon start="80976" stop="81026"/>
                    <exon start="83113" stop="83334"/>
                    <exon start="83455" stop="83557"/>
                    <exon start="83680" stop="84265"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1332</number_coding_nucleotides>
                  <number_encoded_amino_acids>444</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TNNKPFSKIINPFFSKVPVPSSFYKISSINSSSSLNKTPKNLSKKSKMAKEGPNWDGLLKWSLSHADGTKPPPRNLSEEDRRWFMEAMQAQTVDVIKRMKEITLVMQTPEQVLESQGVTSQDIEDMLDELQEHVESIDMANDLNSIGGLVPLLGYLKNSHANIRAKAAEVVSTIVQNNPRSQQLVMEANGLEPLLSNFTSDPDVTARTKALGAISSLIRHNKPAIAAFRLANGYAGLRDALSSESVRFQRKALNLIHYLLHENHSDCNVVTELGFPRVMMHLASSDDGEVREGALQGLLDLAQDKTGEVAGSSSTEENEKLKQILQERIKGISSMSPEDLGAAKEERQLVDSLWNTCYNEPSSLREKGLVVLPGEDALPPDVASKHFEPPLRAWAANRNEDTKPSNEKKQAPLLLGLGPPTQGPPVQNSSSGAMSGEENRDTSA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0317H24.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79550" stop="79825"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>273</number_coding_nucleotides>
                  <number_encoded_amino_acids>91</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PRQQHSSSQPQTAAQQQPAATALSSSQPPTVQQFGPLKNRNKKSNRINKNQTEIFRFGIRYAIYKNRKPKKPKKTRTEPKYRMPTTILNLK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="79407" e_stop="80088"/>
            <exon e_start="80744" e_stop="80886"/>
            <exon e_start="80976" e_stop="81412"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="0.999"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="79407" e_stop="80088" e_length="682"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="80089" i_stop="80743" i_length="655"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="80744" e_stop="80886" e_length="143"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="80887" i_stop="80975" i_length="89"/>
          </intron>
          <exon e_serial="3" e_score="0.995">
            <gDNA_exon_boundary e_start="80976" e_stop="81412" e_length="437"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79407" stop="80078"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396524" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79407" stop="80029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391663" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79408" stop="79842"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247286" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79414" stop="79873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302012" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79455" stop="79941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255789" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79483" stop="80065"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251023" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79483" stop="80007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331585" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79638" stop="80088"/>
              <exon start="80744" stop="80825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269527" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79695" stop="79931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79921" stop="80088"/>
              <exon start="80744" stop="80886"/>
              <exon start="80976" stop="81020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E562209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79945" stop="80088"/>
              <exon start="80744" stop="80886"/>
              <exon start="80976" stop="80985"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80025" stop="80088"/>
              <exon start="80744" stop="80886"/>
              <exon start="80976" stop="81412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248624" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCCTCTTCAGCTCTTCTTCCTCTTATCTTCTCCTCTTCCTCTTCTATTCCAACTACTCTTCAGCTCCAACCACTCTTGTCTTCAGCAGCGCCGCCAGGCGCCAGGCGCCAGCCGCCGTCCACAACAAGGGAAGCAGCAGTAGCCGCGACAGCAGCACAGCAGCAGCCAGCCACAGACAGCAGCACAGCAGCAACCAGCCGCGACAGCACTCAGCAGCAGCCAGCCGCCGACCGTGCAGCAGTTTGGTCCATTAAAAAACCGAAATAAAAAATCGAATCGAATTAATAAAAATCAAACCGAAATATTTCGATTCGGTATTCGATACGCAATTTACAAAAACCGAAAACCGAAAAAACCGAAAAAAACCCGAACCGAACCGAAATACCGAATGCCCACCACTATATTAAATTTGAAGTAATTATATACCCATCTCGATTTTAATTTAATATAAACAAATAATAAACCCTTCTCCAAGATAATAAATCCCTTCTTCTCCAAAGTTCCAGTACCTTCTAGTTTCTACAAAATCTCTTCAATAAATTCTTCTTCTTCCCTAAACAAAACACCGAAAAATCTAAGTAAGAAATCAAAAATGGCGAAAGAGGGACCTAATTGGGATGGTTTATTGAAATGGAGTCTATCTCATGCTGATGGTACCAAACCTCCTCCTCGCAATTTGAG : TGAGGAGGACAGGAGGTGGTTCATGGAGGCTATGCAAGCTCAAACTGTTGATGTGATTAAGAGAATGAAGGAGATTACACTTGTCATGCAAACACCAGAGCAGGTTTTGGAATCACAGGGGGTGACTTCCCAAGATATTGAAG : ATATGCTGGATGAGCTACAAGAACATGTCGAATCAATTGATATGGCTAATGGTGAGTTCTTGGTGTAATTTAGTTATTCAGAAATGTGTGTGTATCATGATTTGGTAGTTACGCATATTACATAATTCTTGCTAACCAGCTAATTTGGAATTGAGGTCTTGTTGTGGAAGCTCTATCTGTTAGAGTGTCCCACATTAGTTGAGGGAATAGATTGTTGTCTCCTTATAGTATTGGACAATTCTTGTCACATGAGCTAGCTTTTGTTGTTGATTTAGGCCCAATTCTTGTCTCCATTTCTTAATATGGAGTTAGAGCTGCATCAGTATTTTCTTAGTTTACTGAATACTAGGCCCAATGTTAAATTGTTCATGCTCTGGTTATCTACTCTCGGTTATCAGAGGAGACTTAACATCTCACATTGTTTGAAAGAATGACCC</gDNA_template>
            <first_frame> L  L  F  S  S  S  S  S  Y  L  L  L  F  L  F  Y  S  N  Y  S  S  A  P  T  T  L  V  F  S  S  A  A  R  R  Q  A  P  A  A  V  H  N  K  G  S  S  S  S  R  D  S  S  T  A  A  A  S  H  R  Q  Q  H  S  S  N  Q  P  R  Q  H  S  A  A  A  S  R  R  P  C  S  S  L  V  H  *  K  T  E  I  K  N  R  I  E  L  I  K  I  K  P  K  Y  F  D  S  V  F  D  T  Q  F  T  K  T  E  N  R  K  N  R  K  K  P  E  P  N  R  N  T  E  C  P  P  L  Y  *  I  *  S  N  Y  I  P  I  S  I  L  I  *  Y  K  Q  I  I  N  P  S  P  R  *  *  I  P  S  S  P  K  F  Q  Y  L  L  V  S  T  K  S  L  Q  *  I  L  L  L  P  *  T  K  H  R  K  I  *  V  R  N  Q  K  W  R  K  R  D  L  I  G  M  V  Y  *  N  G  V  Y  L  M  L  M  V  P  N  L  L  L  A  I  *   : V  R  R  T  G  G  G  S  W  R  L  C  K  L  K  L  L  M  *  L  R  E  *  R  R  L  H  L  S  C  K  H  Q  S  R  F  W  N  H  R  G  *  L  P  K  I  L  K  :  I  C  W  M  S  Y  K  N  M  S  N  Q  L  I  W  L  M  V  S  S  W  C  N  L  V  I  Q  K  C  V  C  I  M  I  W  *  L  R  I  L  H  N  S  C  *  P  A  N  L  E  L  R  S  C  C  G  S  S  I  C  *  S  V  P  H  *  L  R  E  *  I  V  V  S  L  *  Y  W  T  I  L  V  T  *  A  S  F  C  C  *  F  R  P  N  S  C  L  H  F  L  I  W  S  *  S  C  I  S  I  F  L  V  Y  *  I  L  G  P  M  L  N  C  S  C  S  G  Y  L  L  S  V  I  R  G  D  L  T  S  H  I  V  *  K  N  D   </first_frame>
            <second_frame>  S  S  S  A  L  L  P  L  I  F  S  S  S  S  S  I  P  T  T  L  Q  L  Q  P  L  L  S  S  A  A  P  P  G  A  R  R  Q  P  P  S  T  T  R  E  A  A  V  A  A  T  A  A  Q  Q  Q  P  A  T  D  S  S  T  A  A  T  S  R  D  S  T  Q  Q  Q  P  A  A  D  R  A  A  V  W  S  I  K  K  P  K  *  K  I  E  S  N  *  *  K  S  N  R  N  I  S  I  R  Y  S  I  R  N  L  Q  K  P  K  T  E  K  T  E  K  N  P  N  R  T  E  I  P  N  A  H  H  Y  I  K  F  E  V  I  I  Y  P  S  R  F  *  F  N  I  N  K  *  *  T  L  L  Q  D  N  K  S  L  L  L  Q  S  S  S  T  F  *  F  L  Q  N  L  F  N  K  F  F  F  F  P  K  Q  N  T  E  K  S  K  *  E  I  K  N  G  E  R  G  T  *  L  G  W  F  I  E  M  E  S  I  S  C  *  W  Y  Q  T  S  S  S  Q  F  E  :  *  G  G  Q  E  V  V  H  G  G  Y  A  S  S  N  C  *  C  D  *  E  N  E  G  D  Y  T  C  H  A  N  T  R  A  G  F  G  I  T  G  G  D  F  P  R  Y  *  R :   Y  A  G  *  A  T  R  T  C  R  I  N  *  Y  G  *  W  *  V  L  G  V  I  *  L  F  R  N  V  C  V  S  *  F  G  S  Y  A  Y  Y  I  I  L  A  N  Q  L  I  W  N  *  G  L  V  V  E  A  L  S  V  R  V  S  H  I  S  *  G  N  R  L  L  S  P  Y  S  I  G  Q  F  L  S  H  E  L  A  F  V  V  D  L  G  P  I  L  V  S  I  S  *  Y  G  V  R  A  A  S  V  F  S  *  F  T  E  Y  *  A  Q  C  *  I  V  H  A  L  V  I  Y  S  R  L  S  E  E  T  *  H  L  T  L  F  E  R  M  T  </second_frame>
            <third_frame>   P  L  Q  L  F  F  L  L  S  S  P  L  P  L  L  F  Q  L  L  F  S  S  N  H  S  C  L  Q  Q  R  R  Q  A  P  G  A  S  R  R  P  Q  Q  G  K  Q  Q  *  P  R  Q  Q  H  S  S  S  Q  P  Q  T  A  A  Q  Q  Q  P  A  A  T  A  L  S  S  S  Q  P  P  T  V  Q  Q  F  G  P  L  K  N  R  N  K  K  S  N  R  I  N  K  N  Q  T  E  I  F  R  F  G  I  R  Y  A  I  Y  K  N  R  K  P  K  K  P  K  K  T  R  T  E  P  K  Y  R  M  P  T  T  I  L  N  L  K  *  L  Y  T  H  L  D  F  N  L  I  *  T  N  N  K  P  F  S  K  I  I  N  P  F  F  S  K  V  P  V  P  S  S  F  Y  K  I  S  S  I  N  S  S  S  S  L  N  K  T  P  K  N  L  S  K  K  S  K  M  A  K  E  G  P  N  W  D  G  L  L  K  W  S  L  S  H  A  D  G  T  K  P  P  P  R  N  L  S :   E  E  D  R  R  W  F  M  E  A  M  Q  A  Q  T  V  D  V  I  K  R  M  K  E  I  T  L  V  M  Q  T  P  E  Q  V  L  E  S  Q  G  V  T  S  Q  D  I  E   : D  M  L  D  E  L  Q  E  H  V  E  S  I  D  M  A  N  G  E  F  L  V  *  F  S  Y  S  E  M  C  V  Y  H  D  L  V  V  T  H  I  T  *  F  L  L  T  S  *  F  G  I  E  V  L  L  W  K  L  Y  L  L  E  C  P  T  L  V  E  G  I  D  C  C  L  L  I  V  L  D  N  S  C  H  M  S  *  L  L  L  L  I  *  A  Q  F  L  S  P  F  L  N  M  E  L  E  L  H  Q  Y  F  L  S  L  L  N  T  R  P  N  V  K  L  F  M  L  W  L  S  T  L  G  Y  Q  R  R  L  N  I  S  H  C  L  K  E  *  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0317H24.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79859" stop="80088"/>
                    <exon start="80744" stop="80886"/>
                    <exon start="80976" stop="81043"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>438</number_coding_nucleotides>
                  <number_encoded_amino_acids>146</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TNNKPFSKIINPFFSKVPVPSSFYKISSINSSSSLNKTPKNLSKKSKMAKEGPNWDGLLKWSLSHADGTKPPPRNLSEEDRRWFMEAMQAQTVDVIKRMKEITLVMQTPEQVLESQGVTSQDIEDMLDELQEHVESIDMANGEFLV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0317H24.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79550" stop="79825"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>273</number_coding_nucleotides>
                  <number_encoded_amino_acids>91</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PRQQHSSSQPQTAAQQQPAATALSSSQPPTVQQFGPLKNRNKKSNRINKNQTEIFRFGIRYAIYKNRKPKKPKKTRTEPKYRMPTTILNLK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="87255" PGL_stop="83927"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87255" e_stop="87207"/>
            <exon e_start="84336" e_stop="83927"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.653"/>
          <exon-only e_score="0.944"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.653">
            <gDNA_exon_boundary e_start="87255" e_stop="87207" e_length="49"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="87206" i_stop="84337" i_length="2870"/>
          </intron>
          <exon e_serial="2" e_score="0.944">
            <gDNA_exon_boundary e_start="84336" e_stop="83927" e_length="410"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87255" stop="87207"/>
              <exon start="84336" stop="83927"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567067" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATTATTTATTATTTTAAAAGTTTAAAATACTTTTTTATTTTATATTAA : AACACAGTGTTATTTGTAATATCACAAAGATATATTAAGCTGAATAACCTGGTATTGCCCAAAAATGTACATCATGCAGAGGTGTCTCTATTTTCTTCCCCAGACATGGCTCCACTAGAGCTATTCTGCACAGGAGGACCCTGTGTAGGTGGACCTAGGCCTAGCAATAAGGGAGCCTGTTTCTTTTCGTTACTTGGCTTAGTATCCTCGTTCCTATTTGCAGCCCAAGCTCTCAGAGGAGGTTCAAAATGCTTGCTAGCAACATCAGGTGGTAATGCATCCTCTCCGGGGAGAACAACTAGGCCTTTCTCTCTAAGAGAGGAAGGTTCATTGTAGCAAGTATTCCAGAGGGAATCTACAAGTTGCCTCTCTTCTTTAGCAGCACCAAGATCTTCAGGTGACATAGAGGA</gDNA_template>
            <first_frame> N  Y  L  L  F  *  K  F  K  I  L  F  Y  F  I  L   : K  H  S  V  I  C  N  I  T  K  I  Y  *  A  E  *  P  G  I  A  Q  K  C  T  S  C  R  G  V  S  I  F  F  P  R  H  G  S  T  R  A  I  L  H  R  R  T  L  C  R  W  T  *  A  *  Q  *  G  S  L  F  L  F  V  T  W  L  S  I  L  V  P  I  C  S  P  S  S  Q  R  R  F  K  M  L  A  S  N  I  R  W  *  C  I  L  S  G  E  N  N  *  A  F  L  S  K  R  G  R  F  I  V  A  S  I  P  E  G  I  Y  K  L  P  L  F  F  S  S  T  K  I  F  R  *  H  R  G </first_frame>
            <second_frame>  I  I  Y  Y  F  K  S  L  K  Y  F  F  I  L  Y  *  :  N  T  V  L  F  V  I  S  Q  R  Y  I  K  L  N  N  L  V  L  P  K  N  V  H  H  A  E  V  S  L  F  S  S  P  D  M  A  P  L  E  L  F  C  T  G  G  P  C  V  G  G  P  R  P  S  N  K  G  A  C  F  F  S  L  L  G  L  V  S  S  F  L  F  A  A  Q  A  L  R  G  G  S  K  C  L  L  A  T  S  G  G  N  A  S  S  P  G  R  T  T  R  P  F  S  L  R  E  E  G  S  L  *  Q  V  F  Q  R  E  S  T  S  C  L  S  S  L  A  A  P  R  S  S  G  D  I  E   </second_frame>
            <third_frame>   L  F  I  I  L  K  V  *  N  T  F  L  F  Y  I  K :   T  Q  C  Y  L  *  Y  H  K  D  I  L  S  *  I  T  W  Y  C  P  K  M  Y  I  M  Q  R  C  L  Y  F  L  P  Q  T  W  L  H  *  S  Y  S  A  Q  E  D  P  V  *  V  D  L  G  L  A  I  R  E  P  V  S  F  R  Y  L  A  *  Y  P  R  S  Y  L  Q  P  K  L  S  E  E  V  Q  N  A  C  *  Q  H  Q  V  V  M  H  P  L  R  G  E  Q  L  G  L  S  L  *  E  R  K  V  H  C  S  K  Y  S  R  G  N  L  Q  V  A  S  L  L  *  Q  H  Q  D  L  Q  V  T  *  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0317H24.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84336" stop="84001"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>333</number_coding_nucleotides>
                  <number_encoded_amino_acids>111</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NTVLFVISQRYIKLNNLVLPKNVHHAEVSLFSSPDMAPLELFCTGGPCVGGPRPSNKGACFFSLLGLVSSFLFAAQALRGGSKCLLATSGGNASSPGRTTRPFSLREEGSL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="87324" PGL_stop="95014"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87324" e_stop="87572"/>
            <exon e_start="90097" e_stop="90208"/>
            <exon e_start="90311" e_stop="90384"/>
            <exon e_start="90459" e_stop="90505"/>
            <exon e_start="90605" e_stop="90755"/>
            <exon e_start="90840" e_stop="90884"/>
            <exon e_start="90954" e_stop="91158"/>
            <exon e_start="91247" e_stop="91308"/>
            <exon e_start="91384" e_stop="91484"/>
            <exon e_start="91898" e_stop="91952"/>
            <exon e_start="92041" e_stop="92088"/>
            <exon e_start="93116" e_stop="93423"/>
            <exon e_start="94997" e_stop="95014"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.966" e_score="0.960"/>
          <exon-intron don_prob="0.943" acc_prob="0.913" e_score="1.000"/>
          <exon-intron don_prob="0.849" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.819" acc_prob="0.158" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.971" e_score="0.995"/>
          <exon-intron don_prob="0.974" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.909" acc_prob="0.995" e_score="0.990"/>
          <exon-intron don_prob="0.631" acc_prob="0.979" e_score="0.982"/>
          <exon-intron don_prob="0.997" acc_prob="0.991" e_score="0.958"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.909"/>
          <exon-only e_score="0.889"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.960">
            <gDNA_exon_boundary e_start="87324" e_stop="87572" e_length="249"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.966">
            <gDNA_intron_boundary i_start="87573" i_stop="90096" i_length="2524"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="90097" e_stop="90208" e_length="112"/>
          </exon>
          <intron i_serial="2" don_prob="0.943" acc_prob="0.913">
            <gDNA_intron_boundary i_start="90209" i_stop="90310" i_length="102"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="90311" e_stop="90384" e_length="74"/>
          </exon>
          <intron i_serial="3" don_prob="0.849" acc_prob="0.000">
            <gDNA_intron_boundary i_start="90385" i_stop="90458" i_length="74"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="90459" e_stop="90505" e_length="47"/>
          </exon>
          <intron i_serial="4" don_prob="0.961" acc_prob="0.958">
            <gDNA_intron_boundary i_start="90506" i_stop="90604" i_length="99"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="90605" e_stop="90755" e_length="151"/>
          </exon>
          <intron i_serial="5" don_prob="0.960" acc_prob="0.986">
            <gDNA_intron_boundary i_start="90756" i_stop="90839" i_length="84"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="90840" e_stop="90884" e_length="45"/>
          </exon>
          <intron i_serial="6" don_prob="0.819" acc_prob="0.158">
            <gDNA_intron_boundary i_start="90885" i_stop="90953" i_length="69"/>
          </intron>
          <exon e_serial="7" e_score="0.995">
            <gDNA_exon_boundary e_start="90954" e_stop="91158" e_length="205"/>
          </exon>
          <intron i_serial="7" don_prob="0.994" acc_prob="0.971">
            <gDNA_intron_boundary i_start="91159" i_stop="91246" i_length="88"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="91247" e_stop="91308" e_length="62"/>
          </exon>
          <intron i_serial="8" don_prob="0.974" acc_prob="0.990">
            <gDNA_intron_boundary i_start="91309" i_stop="91383" i_length="75"/>
          </intron>
          <exon e_serial="9" e_score="0.990">
            <gDNA_exon_boundary e_start="91384" e_stop="91484" e_length="101"/>
          </exon>
          <intron i_serial="9" don_prob="0.909" acc_prob="0.995">
            <gDNA_intron_boundary i_start="91485" i_stop="91897" i_length="413"/>
          </intron>
          <exon e_serial="10" e_score="0.982">
            <gDNA_exon_boundary e_start="91898" e_stop="91952" e_length="55"/>
          </exon>
          <intron i_serial="10" don_prob="0.631" acc_prob="0.979">
            <gDNA_intron_boundary i_start="91953" i_stop="92040" i_length="88"/>
          </intron>
          <exon e_serial="11" e_score="0.958">
            <gDNA_exon_boundary e_start="92041" e_stop="92088" e_length="48"/>
          </exon>
          <intron i_serial="11" don_prob="0.997" acc_prob="0.991">
            <gDNA_intron_boundary i_start="92089" i_stop="93115" i_length="1027"/>
          </intron>
          <exon e_serial="12" e_score="0.909">
            <gDNA_exon_boundary e_start="93116" e_stop="93423" e_length="308"/>
          </exon>
          <intron i_serial="12" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="93424" i_stop="94996" i_length="1573"/>
          </intron>
          <exon e_serial="13" e_score="0.889">
            <gDNA_exon_boundary e_start="94997" e_stop="95014" e_length="18"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87324" stop="87572"/>
              <exon start="90097" stop="90208"/>
              <exon start="90311" stop="90384"/>
              <exon start="90459" stop="90505"/>
              <exon start="90605" stop="90755"/>
              <exon start="90840" stop="90884"/>
              <exon start="90954" stop="90967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419525" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87324" stop="87572"/>
              <exon start="90097" stop="90208"/>
              <exon start="90311" stop="90384"/>
              <exon start="90459" stop="90505"/>
              <exon start="90605" stop="90618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444298" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87332" stop="87572"/>
              <exon start="90097" stop="90208"/>
              <exon start="90311" stop="90384"/>
              <exon start="90459" stop="90505"/>
              <exon start="90605" stop="90656"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87356" stop="87572"/>
              <exon start="90097" stop="90180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263869" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87365" stop="87572"/>
              <exon start="90097" stop="90208"/>
              <exon start="90311" stop="90384"/>
              <exon start="90459" stop="90505"/>
              <exon start="90605" stop="90618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359084" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87397" stop="87572"/>
              <exon start="90097" stop="90208"/>
              <exon start="90311" stop="90384"/>
              <exon start="90459" stop="90505"/>
              <exon start="90605" stop="90708"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300609" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87397" stop="87572"/>
              <exon start="90097" stop="90131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374261" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87419" stop="87572"/>
              <exon start="90097" stop="90208"/>
              <exon start="90311" stop="90384"/>
              <exon start="90459" stop="90505"/>
              <exon start="90605" stop="90755"/>
              <exon start="90840" stop="90884"/>
              <exon start="90954" stop="91158"/>
              <exon start="91247" stop="91274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692049" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90131" stop="90208"/>
              <exon start="90311" stop="90384"/>
              <exon start="90459" stop="90505"/>
              <exon start="90605" stop="90755"/>
              <exon start="90840" stop="90863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90370" stop="90384"/>
              <exon start="90459" stop="90505"/>
              <exon start="90605" stop="90755"/>
              <exon start="90840" stop="90884"/>
              <exon start="90954" stop="91158"/>
              <exon start="91247" stop="91262"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311770" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90865" stop="90884"/>
              <exon start="90954" stop="91158"/>
              <exon start="91247" stop="91308"/>
              <exon start="91384" stop="91484"/>
              <exon start="91898" stop="91952"/>
              <exon start="92041" stop="92088"/>
              <exon start="93116" stop="93423"/>
              <exon start="94997" stop="95014"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93146" stop="93389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287187" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGAAATCGAACCCTAAATCTGATAAACCCTTTGAATTTAGGGTTTTGCAGAATCATTTACTATGTTTCGAATCGGAGCTAAGCTCTATAGAGCTGCGAGAATCGGTGGCTCCGCCGTGTCCGATTTCAGGTCACCATCAACAAGATTTTTCTCCATTAACAACAATGTTAATACTGGTTTCAAGACCAACCCAGTTGCTCTTCAAATGATCAATTATGCTCTTTCTCTAGCCCGGGCTCAAAAATCAG : ACGAATCATATGCGCAAGCTCAATTGGTACTTGAGCAGTGCCACTCAACTCAGTCGGATGAGAGTGCTAAAGGATTGGTTATGCTCGCTATGTCTACCTTATTTTCTGAAAG : AGGGAATTTTAGTGAAGCCATTGAGAAGCTCCAGAAAATTCAAGATTTGGGCTTGTCAACTTTAGCTGTTAGAG : TTGCCGCCTCTGAAGCACTTGCTGGGCTTTATTTAGAATCATATCAA : GATGATTTTTCATCAGCAACTGCAGATATGTGCTTGCAACTGCTGGAAACCATAAGGCTAGAAATTGGTGGTGGTGGATCTGACATATTGGAAGCTCGTGCAAAAGCATTGAAAGGGCTGGTTGAGTTGGTCCATGGTAATGCTGAATCAG : CTGAGTCATTCTTTGAAGGAGCTCAAGGTGATAAAGGTTGCTTTG : GCAATGTTGCACTATCTTTTGGTGAATTCCTGCATTGTAAGCGGAATTCCCAGATGGCGAGGGAGTTATATCAAAGGGCAATGCAGGATGTATCAGAACGTAAAGATTTTACCGACTCACAGTCCATATCAGCTTGTAACATGAATTTGGAGGAGACTTTGTTAGGAGCTACATGTGCTCTAGGACAGCTTGAGGCTCATTTGGG : GAATTTTGATGATGCTGAGGAAATACTAACTGCAGCACTGAAGAAAGCAGAAGAGTGCTTTG : GTAATTATCATCCAAAGGTAGGTATTATTTTGACCTGCATAGCTCTCATGTATCGACATAAAGCAGCCATGGAGCAGTCAAGCTCGCTTTTGATTCAAGAG : GGACTCTATAGAAGAGCAATTGAAGTGCTCAAAGCTCCACCCTTGGAAGTAGAAG : GTGTTGTAGCGACACGGTCTAGAAGGGATATTCTTGCCCTTGCAAGAG : GTGGGTACGCAGAGACGCTTATCGTGCAACAAAACAGAAAAGCAGAAGGTGAAAAACTGAAGCAGTGGGCTGAAACAGCTTGGACAAGTCGCAGATTATCACTCGCGGAGGCACTAGAGTCATCAGCCAAAGTGTCTGTCATAGATACTCGAATAAGCCGAGTCCTGTAGTTTGTTTCCTTCCTTGACACATTACGTTCATCAACTCACAAGTATATCTATATACTTTTTGTAGATATGATATATATGCTCTAAACAACACAAGAGATTTCGAAATTTTCTTGAATAATGAATGTATTACTGTTGTAC : ATAAAAATAAAAAATAAA</gDNA_template>
            <first_frame> L  K  S  N  P  K  S  D  K  P  F  E  F  R  V  L  Q  N  H  L  L  C  F  E  S  E  L  S  S  I  E  L  R  E  S  V  A  P  P  C  P  I  S  G  H  H  Q  Q  D  F  S  P  L  T  T  M  L  I  L  V  S  R  P  T  Q  L  L  F  K  *  S  I  M  L  F  L  *  P  G  L  K  N  Q  :  T  N  H  M  R  K  L  N  W  Y  L  S  S  A  T  Q  L  S  R  M  R  V  L  K  D  W  L  C  S  L  C  L  P  Y  F  L  K   : E  G  I  L  V  K  P  L  R  S  S  R  K  F  K  I  W  A  C  Q  L  *  L  L  E  :  L  P  P  L  K  H  L  L  G  F  I  *  N  H  I  K :   M  I  F  H  Q  Q  L  Q  I  C  A  C  N  C  W  K  P  *  G  *  K  L  V  V  V  D  L  T  Y  W  K  L  V  Q  K  H  *  K  G  W  L  S  W  S  M  V  M  L  N  Q  :  L  S  H  S  L  K  E  L  K  V  I  K  V  A  L  :  A  M  L  H  Y  L  L  V  N  S  C  I  V  S  G  I  P  R  W  R  G  S  Y  I  K  G  Q  C  R  M  Y  Q  N  V  K  I  L  P  T  H  S  P  Y  Q  L  V  T  *  I  W  R  R  L  C  *  E  L  H  V  L  *  D  S  L  R  L  I  W   : G  I  L  M  M  L  R  K  Y  *  L  Q  H  *  R  K  Q  K  S  A  L  :  V  I  I  I  Q  R  *  V  L  F  *  P  A  *  L  S  C  I  D  I  K  Q  P  W  S  S  Q  A  R  F  *  F  K  R :   D  S  I  E  E  Q  L  K  C  S  K  L  H  P  W  K  *  K  :  V  L  *  R  H  G  L  E  G  I  F  L  P  L  Q  E  :  V  G  T  Q  R  R  L  S  C  N  K  T  E  K  Q  K  V  K  N  *  S  S  G  L  K  Q  L  G  Q  V  A  D  Y  H  S  R  R  H  *  S  H  Q  P  K  C  L  S  *  I  L  E  *  A  E  S  C  S  L  F  P  S  L  T  H  Y  V  H  Q  L  T  S  I  S  I  Y  F  L  *  I  *  Y  I  C  S  K  Q  H  K  R  F  R  N  F  L  E  *  *  M  Y  Y  C  C  T :   *  K  *  K  I   </first_frame>
            <second_frame>  *  N  R  T  L  N  L  I  N  P  L  N  L  G  F  C  R  I  I  Y  Y  V  S  N  R  S  *  A  L  *  S  C  E  N  R  W  L  R  R  V  R  F  Q  V  T  I  N  K  I  F  L  H  *  Q  Q  C  *  Y  W  F  Q  D  Q  P  S  C  S  S  N  D  Q  L  C  S  F  S  S  P  G  S  K  I  R :   R  I  I  C  A  S  S  I  G  T  *  A  V  P  L  N  S  V  G  *  E  C  *  R  I  G  Y  A  R  Y  V  Y  L  I  F  *  K  :  R  E  F  *  *  S  H  *  E  A  P  E  N  S  R  F  G  L  V  N  F  S  C  *  S :   C  R  L  *  S  T  C  W  A  L  F  R  I  I  S   : R  *  F  F  I  S  N  C  R  Y  V  L  A  T  A  G  N  H  K  A  R  N  W  W  W  W  I  *  H  I  G  S  S  C  K  S  I  E  R  A  G  *  V  G  P  W  *  C  *  I  S :   *  V  I  L  *  R  S  S  R  *  *  R  L  L  W :   Q  C  C  T  I  F  W  *  I  P  A  L  *  A  E  F  P  D  G  E  G  V  I  S  K  G  N  A  G  C  I  R  T  *  R  F  Y  R  L  T  V  H  I  S  L  *  H  E  F  G  G  D  F  V  R  S  Y  M  C  S  R  T  A  *  G  S  F  G  :  E  F  *  *  C  *  G  N  T  N  C  S  T  E  E  S  R  R  V  L  W :   *  L  S  S  K  G  R  Y  Y  F  D  L  H  S  S  H  V  S  T  *  S  S  H  G  A  V  K  L  A  F  D  S  R   : G  T  L  *  K  S  N  *  S  A  Q  S  S  T  L  G  S  R  R :   C  C  S  D  T  V  *  K  G  Y  S  C  P  C  K  R :   W  V  R  R  D  A  Y  R  A  T  K  Q  K  S  R  R  *  K  T  E  A  V  G  *  N  S  L  D  K  S  Q  I  I  T  R  G  G  T  R  V  I  S  Q  S  V  C  H  R  Y  S  N  K  P  S  P  V  V  C  F  L  P  *  H  I  T  F  I  N  S  Q  V  Y  L  Y  T  F  C  R  Y  D  I  Y  A  L  N  N  T  R  D  F  E  I  F  L  N  N  E  C  I  T  V  V   : H  K  N  K  K  *  </second_frame>
            <third_frame>   E  I  E  P  *  I  *  *  T  L  *  I  *  G  F  A  E  S  F  T  M  F  R  I  G  A  K  L  Y  R  A  A  R  I  G  G  S  A  V  S  D  F  R  S  P  S  T  R  F  F  S  I  N  N  N  V  N  T  G  F  K  T  N  P  V  A  L  Q  M  I  N  Y  A  L  S  L  A  R  A  Q  K  S   : D  E  S  Y  A  Q  A  Q  L  V  L  E  Q  C  H  S  T  Q  S  D  E  S  A  K  G  L  V  M  L  A  M  S  T  L  F  S  E  R :   G  N  F  S  E  A  I  E  K  L  Q  K  I  Q  D  L  G  L  S  T  L  A  V  R   : V  A  A  S  E  A  L  A  G  L  Y  L  E  S  Y  Q  :  D  D  F  S  S  A  T  A  D  M  C  L  Q  L  L  E  T  I  R  L  E  I  G  G  G  G  S  D  I  L  E  A  R  A  K  A  L  K  G  L  V  E  L  V  H  G  N  A  E  S   : A  E  S  F  F  E  G  A  Q  G  D  K  G  C  F   : G  N  V  A  L  S  F  G  E  F  L  H  C  K  R  N  S  Q  M  A  R  E  L  Y  Q  R  A  M  Q  D  V  S  E  R  K  D  F  T  D  S  Q  S  I  S  A  C  N  M  N  L  E  E  T  L  L  G  A  T  C  A  L  G  Q  L  E  A  H  L  G :   N  F  D  D  A  E  E  I  L  T  A  A  L  K  K  A  E  E  C  F   : G  N  Y  H  P  K  V  G  I  I  L  T  C  I  A  L  M  Y  R  H  K  A  A  M  E  Q  S  S  S  L  L  I  Q  E  :  G  L  Y  R  R  A  I  E  V  L  K  A  P  P  L  E  V  E   : G  V  V  A  T  R  S  R  R  D  I  L  A  L  A  R   : G  G  Y  A  E  T  L  I  V  Q  Q  N  R  K  A  E  G  E  K  L  K  Q  W  A  E  T  A  W  T  S  R  R  L  S  L  A  E  A  L  E  S  S  A  K  V  S  V  I  D  T  R  I  S  R  V  L  *  F  V  S  F  L  D  T  L  R  S  S  T  H  K  Y  I  Y  I  L  F  V  D  M  I  Y  M  L  *  T  T  Q  E  I  S  K  F  S  *  I  M  N  V  L  L  L  Y  :  I  K  I  K  N  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0317H24.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87365" stop="87572"/>
                    <exon start="90097" stop="90208"/>
                    <exon start="90311" stop="90384"/>
                    <exon start="90459" stop="90505"/>
                    <exon start="90605" stop="90755"/>
                    <exon start="90840" stop="90884"/>
                    <exon start="90954" stop="91158"/>
                    <exon start="91247" stop="91308"/>
                    <exon start="91384" stop="91484"/>
                    <exon start="91898" stop="91952"/>
                    <exon start="92041" stop="92088"/>
                    <exon start="93116" stop="93285"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1275</number_coding_nucleotides>
                  <number_encoded_amino_acids>425</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFAESFTMFRIGAKLYRAARIGGSAVSDFRSPSTRFFSINNNVNTGFKTNPVALQMINYALSLARAQKSDESYAQAQLVLEQCHSTQSDESAKGLVMLAMSTLFSERGNFSEAIEKLQKIQDLGLSTLAVRVAASEALAGLYLESYQDDFSSATADMCLQLLETIRLEIGGGGSDILEARAKALKGLVELVHGNAESAESFFEGAQGDKGCFGNVALSFGEFLHCKRNSQMARELYQRAMQDVSERKDFTDSQSISACNMNLEETLLGATCALGQLEAHLGNFDDAEEILTAALKKAEECFGNYHPKVGIILTCIALMYRHKAAMEQSSSLLIQEGLYRRAIEVLKAPPLEVEGVVATRSRRDILALARGGYAETLIVQQNRKAEGEKLKQWAETAWTSRRLSLAEALESSAKVSVIDTRISRVL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="87324" e_stop="87572"/>
            <exon e_start="90097" e_stop="90208"/>
            <exon e_start="90311" e_stop="90384"/>
            <exon e_start="90459" e_stop="90505"/>
            <exon e_start="90605" e_stop="90755"/>
            <exon e_start="90840" e_stop="90884"/>
            <exon e_start="90954" e_stop="91158"/>
            <exon e_start="91247" e_stop="91308"/>
            <exon e_start="91384" e_stop="91484"/>
            <exon e_start="91898" e_stop="91952"/>
            <exon e_start="92041" e_stop="92088"/>
            <exon e_start="93116" e_stop="93427"/>
            <exon e_start="94997" e_stop="95010"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.966" e_score="0.960"/>
          <exon-intron don_prob="0.943" acc_prob="0.913" e_score="1.000"/>
          <exon-intron don_prob="0.849" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.819" acc_prob="0.158" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.971" e_score="0.995"/>
          <exon-intron don_prob="0.974" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.909" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.631" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.857"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.960">
            <gDNA_exon_boundary e_start="87324" e_stop="87572" e_length="249"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.966">
            <gDNA_intron_boundary i_start="87573" i_stop="90096" i_length="2524"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="90097" e_stop="90208" e_length="112"/>
          </exon>
          <intron i_serial="2" don_prob="0.943" acc_prob="0.913">
            <gDNA_intron_boundary i_start="90209" i_stop="90310" i_length="102"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="90311" e_stop="90384" e_length="74"/>
          </exon>
          <intron i_serial="3" don_prob="0.849" acc_prob="0.000">
            <gDNA_intron_boundary i_start="90385" i_stop="90458" i_length="74"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="90459" e_stop="90505" e_length="47"/>
          </exon>
          <intron i_serial="4" don_prob="0.961" acc_prob="0.958">
            <gDNA_intron_boundary i_start="90506" i_stop="90604" i_length="99"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="90605" e_stop="90755" e_length="151"/>
          </exon>
          <intron i_serial="5" don_prob="0.960" acc_prob="0.986">
            <gDNA_intron_boundary i_start="90756" i_stop="90839" i_length="84"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="90840" e_stop="90884" e_length="45"/>
          </exon>
          <intron i_serial="6" don_prob="0.819" acc_prob="0.158">
            <gDNA_intron_boundary i_start="90885" i_stop="90953" i_length="69"/>
          </intron>
          <exon e_serial="7" e_score="0.995">
            <gDNA_exon_boundary e_start="90954" e_stop="91158" e_length="205"/>
          </exon>
          <intron i_serial="7" don_prob="0.994" acc_prob="0.971">
            <gDNA_intron_boundary i_start="91159" i_stop="91246" i_length="88"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="91247" e_stop="91308" e_length="62"/>
          </exon>
          <intron i_serial="8" don_prob="0.974" acc_prob="0.990">
            <gDNA_intron_boundary i_start="91309" i_stop="91383" i_length="75"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="91384" e_stop="91484" e_length="101"/>
          </exon>
          <intron i_serial="9" don_prob="0.909" acc_prob="0.995">
            <gDNA_intron_boundary i_start="91485" i_stop="91897" i_length="413"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="91898" e_stop="91952" e_length="55"/>
          </exon>
          <intron i_serial="10" don_prob="0.631" acc_prob="0.979">
            <gDNA_intron_boundary i_start="91953" i_stop="92040" i_length="88"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="92041" e_stop="92088" e_length="48"/>
          </exon>
          <intron i_serial="11" don_prob="0.997" acc_prob="0.991">
            <gDNA_intron_boundary i_start="92089" i_stop="93115" i_length="1027"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="93116" e_stop="93427" e_length="312"/>
          </exon>
          <intron i_serial="12" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="93428" i_stop="94996" i_length="1569"/>
          </intron>
          <exon e_serial="13" e_score="0.857">
            <gDNA_exon_boundary e_start="94997" e_stop="95010" e_length="14"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87324" stop="87572"/>
              <exon start="90097" stop="90208"/>
              <exon start="90311" stop="90384"/>
              <exon start="90459" stop="90505"/>
              <exon start="90605" stop="90755"/>
              <exon start="90840" stop="90884"/>
              <exon start="90954" stop="90967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419525" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87324" stop="87572"/>
              <exon start="90097" stop="90208"/>
              <exon start="90311" stop="90384"/>
              <exon start="90459" stop="90505"/>
              <exon start="90605" stop="90618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444298" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87332" stop="87572"/>
              <exon start="90097" stop="90208"/>
              <exon start="90311" stop="90384"/>
              <exon start="90459" stop="90505"/>
              <exon start="90605" stop="90656"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87356" stop="87572"/>
              <exon start="90097" stop="90180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263869" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87365" stop="87572"/>
              <exon start="90097" stop="90208"/>
              <exon start="90311" stop="90384"/>
              <exon start="90459" stop="90505"/>
              <exon start="90605" stop="90618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359084" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87397" stop="87572"/>
              <exon start="90097" stop="90208"/>
              <exon start="90311" stop="90384"/>
              <exon start="90459" stop="90505"/>
              <exon start="90605" stop="90708"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300609" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87397" stop="87572"/>
              <exon start="90097" stop="90131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374261" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87419" stop="87572"/>
              <exon start="90097" stop="90208"/>
              <exon start="90311" stop="90384"/>
              <exon start="90459" stop="90505"/>
              <exon start="90605" stop="90755"/>
              <exon start="90840" stop="90884"/>
              <exon start="90954" stop="91158"/>
              <exon start="91247" stop="91274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692049" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90131" stop="90208"/>
              <exon start="90311" stop="90384"/>
              <exon start="90459" stop="90505"/>
              <exon start="90605" stop="90755"/>
              <exon start="90840" stop="90863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90370" stop="90384"/>
              <exon start="90459" stop="90505"/>
              <exon start="90605" stop="90755"/>
              <exon start="90840" stop="90884"/>
              <exon start="90954" stop="91158"/>
              <exon start="91247" stop="91262"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311770" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91024" stop="91158"/>
              <exon start="91247" stop="91308"/>
              <exon start="91384" stop="91484"/>
              <exon start="91898" stop="91952"/>
              <exon start="92041" stop="92088"/>
              <exon start="93116" stop="93427"/>
              <exon start="94997" stop="95010"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374260" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93146" stop="93389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287187" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGAAATCGAACCCTAAATCTGATAAACCCTTTGAATTTAGGGTTTTGCAGAATCATTTACTATGTTTCGAATCGGAGCTAAGCTCTATAGAGCTGCGAGAATCGGTGGCTCCGCCGTGTCCGATTTCAGGTCACCATCAACAAGATTTTTCTCCATTAACAACAATGTTAATACTGGTTTCAAGACCAACCCAGTTGCTCTTCAAATGATCAATTATGCTCTTTCTCTAGCCCGGGCTCAAAAATCAG : ACGAATCATATGCGCAAGCTCAATTGGTACTTGAGCAGTGCCACTCAACTCAGTCGGATGAGAGTGCTAAAGGATTGGTTATGCTCGCTATGTCTACCTTATTTTCTGAAAG : AGGGAATTTTAGTGAAGCCATTGAGAAGCTCCAGAAAATTCAAGATTTGGGCTTGTCAACTTTAGCTGTTAGAG : TTGCCGCCTCTGAAGCACTTGCTGGGCTTTATTTAGAATCATATCAA : GATGATTTTTCATCAGCAACTGCAGATATGTGCTTGCAACTGCTGGAAACCATAAGGCTAGAAATTGGTGGTGGTGGATCTGACATATTGGAAGCTCGTGCAAAAGCATTGAAAGGGCTGGTTGAGTTGGTCCATGGTAATGCTGAATCAG : CTGAGTCATTCTTTGAAGGAGCTCAAGGTGATAAAGGTTGCTTTG : GCAATGTTGCACTATCTTTTGGTGAATTCCTGCATTGTAAGCGGAATTCCCAGATGGCGAGGGAGTTATATCAAAGGGCAATGCAGGATGTATCAGAACGTAAAGATTTTACCGACTCACAGTCCATATCAGCTTGTAACATGAATTTGGAGGAGACTTTGTTAGGAGCTACATGTGCTCTAGGACAGCTTGAGGCTCATTTGGG : GAATTTTGATGATGCTGAGGAAATACTAACTGCAGCACTGAAGAAAGCAGAAGAGTGCTTTG : GTAATTATCATCCAAAGGTAGGTATTATTTTGACCTGCATAGCTCTCATGTATCGACATAAAGCAGCCATGGAGCAGTCAAGCTCGCTTTTGATTCAAGAG : GGACTCTATAGAAGAGCAATTGAAGTGCTCAAAGCTCCACCCTTGGAAGTAGAAG : GTGTTGTAGCGACACGGTCTAGAAGGGATATTCTTGCCCTTGCAAGAG : GTGGGTACGCAGAGACGCTTATCGTGCAACAAAACAGAAAAGCAGAAGGTGAAAAACTGAAGCAGTGGGCTGAAACAGCTTGGACAAGTCGCAGATTATCACTCGCGGAGGCACTAGAGTCATCAGCCAAAGTGTCTGTCATAGATACTCGAATAAGCCGAGTCCTGTAGTTTGTTTCCTTCCTTGACACATTACGTTCATCAACTCACAAGTATATCTATATACTTTTTGTAGATATGATATATATGCTCTAAACAACACAAGAGATTTCGAAATTTTCTTGAATAATGAATGTATTACTGTTGTACATTA : ATAAAAATAAAAAA</gDNA_template>
            <first_frame> L  K  S  N  P  K  S  D  K  P  F  E  F  R  V  L  Q  N  H  L  L  C  F  E  S  E  L  S  S  I  E  L  R  E  S  V  A  P  P  C  P  I  S  G  H  H  Q  Q  D  F  S  P  L  T  T  M  L  I  L  V  S  R  P  T  Q  L  L  F  K  *  S  I  M  L  F  L  *  P  G  L  K  N  Q  :  T  N  H  M  R  K  L  N  W  Y  L  S  S  A  T  Q  L  S  R  M  R  V  L  K  D  W  L  C  S  L  C  L  P  Y  F  L  K   : E  G  I  L  V  K  P  L  R  S  S  R  K  F  K  I  W  A  C  Q  L  *  L  L  E  :  L  P  P  L  K  H  L  L  G  F  I  *  N  H  I  K :   M  I  F  H  Q  Q  L  Q  I  C  A  C  N  C  W  K  P  *  G  *  K  L  V  V  V  D  L  T  Y  W  K  L  V  Q  K  H  *  K  G  W  L  S  W  S  M  V  M  L  N  Q  :  L  S  H  S  L  K  E  L  K  V  I  K  V  A  L  :  A  M  L  H  Y  L  L  V  N  S  C  I  V  S  G  I  P  R  W  R  G  S  Y  I  K  G  Q  C  R  M  Y  Q  N  V  K  I  L  P  T  H  S  P  Y  Q  L  V  T  *  I  W  R  R  L  C  *  E  L  H  V  L  *  D  S  L  R  L  I  W   : G  I  L  M  M  L  R  K  Y  *  L  Q  H  *  R  K  Q  K  S  A  L  :  V  I  I  I  Q  R  *  V  L  F  *  P  A  *  L  S  C  I  D  I  K  Q  P  W  S  S  Q  A  R  F  *  F  K  R :   D  S  I  E  E  Q  L  K  C  S  K  L  H  P  W  K  *  K  :  V  L  *  R  H  G  L  E  G  I  F  L  P  L  Q  E  :  V  G  T  Q  R  R  L  S  C  N  K  T  E  K  Q  K  V  K  N  *  S  S  G  L  K  Q  L  G  Q  V  A  D  Y  H  S  R  R  H  *  S  H  Q  P  K  C  L  S  *  I  L  E  *  A  E  S  C  S  L  F  P  S  L  T  H  Y  V  H  Q  L  T  S  I  S  I  Y  F  L  *  I  *  Y  I  C  S  K  Q  H  K  R  F  R  N  F  L  E  *  *  M  Y  Y  C  C  T  L  :  I  K  I  K   </first_frame>
            <second_frame>  *  N  R  T  L  N  L  I  N  P  L  N  L  G  F  C  R  I  I  Y  Y  V  S  N  R  S  *  A  L  *  S  C  E  N  R  W  L  R  R  V  R  F  Q  V  T  I  N  K  I  F  L  H  *  Q  Q  C  *  Y  W  F  Q  D  Q  P  S  C  S  S  N  D  Q  L  C  S  F  S  S  P  G  S  K  I  R :   R  I  I  C  A  S  S  I  G  T  *  A  V  P  L  N  S  V  G  *  E  C  *  R  I  G  Y  A  R  Y  V  Y  L  I  F  *  K  :  R  E  F  *  *  S  H  *  E  A  P  E  N  S  R  F  G  L  V  N  F  S  C  *  S :   C  R  L  *  S  T  C  W  A  L  F  R  I  I  S   : R  *  F  F  I  S  N  C  R  Y  V  L  A  T  A  G  N  H  K  A  R  N  W  W  W  W  I  *  H  I  G  S  S  C  K  S  I  E  R  A  G  *  V  G  P  W  *  C  *  I  S :   *  V  I  L  *  R  S  S  R  *  *  R  L  L  W :   Q  C  C  T  I  F  W  *  I  P  A  L  *  A  E  F  P  D  G  E  G  V  I  S  K  G  N  A  G  C  I  R  T  *  R  F  Y  R  L  T  V  H  I  S  L  *  H  E  F  G  G  D  F  V  R  S  Y  M  C  S  R  T  A  *  G  S  F  G  :  E  F  *  *  C  *  G  N  T  N  C  S  T  E  E  S  R  R  V  L  W :   *  L  S  S  K  G  R  Y  Y  F  D  L  H  S  S  H  V  S  T  *  S  S  H  G  A  V  K  L  A  F  D  S  R   : G  T  L  *  K  S  N  *  S  A  Q  S  S  T  L  G  S  R  R :   C  C  S  D  T  V  *  K  G  Y  S  C  P  C  K  R :   W  V  R  R  D  A  Y  R  A  T  K  Q  K  S  R  R  *  K  T  E  A  V  G  *  N  S  L  D  K  S  Q  I  I  T  R  G  G  T  R  V  I  S  Q  S  V  C  H  R  Y  S  N  K  P  S  P  V  V  C  F  L  P  *  H  I  T  F  I  N  S  Q  V  Y  L  Y  T  F  C  R  Y  D  I  Y  A  L  N  N  T  R  D  F  E  I  F  L  N  N  E  C  I  T  V  V  H  * :   *  K  *  K  </second_frame>
            <third_frame>   E  I  E  P  *  I  *  *  T  L  *  I  *  G  F  A  E  S  F  T  M  F  R  I  G  A  K  L  Y  R  A  A  R  I  G  G  S  A  V  S  D  F  R  S  P  S  T  R  F  F  S  I  N  N  N  V  N  T  G  F  K  T  N  P  V  A  L  Q  M  I  N  Y  A  L  S  L  A  R  A  Q  K  S   : D  E  S  Y  A  Q  A  Q  L  V  L  E  Q  C  H  S  T  Q  S  D  E  S  A  K  G  L  V  M  L  A  M  S  T  L  F  S  E  R :   G  N  F  S  E  A  I  E  K  L  Q  K  I  Q  D  L  G  L  S  T  L  A  V  R   : V  A  A  S  E  A  L  A  G  L  Y  L  E  S  Y  Q  :  D  D  F  S  S  A  T  A  D  M  C  L  Q  L  L  E  T  I  R  L  E  I  G  G  G  G  S  D  I  L  E  A  R  A  K  A  L  K  G  L  V  E  L  V  H  G  N  A  E  S   : A  E  S  F  F  E  G  A  Q  G  D  K  G  C  F   : G  N  V  A  L  S  F  G  E  F  L  H  C  K  R  N  S  Q  M  A  R  E  L  Y  Q  R  A  M  Q  D  V  S  E  R  K  D  F  T  D  S  Q  S  I  S  A  C  N  M  N  L  E  E  T  L  L  G  A  T  C  A  L  G  Q  L  E  A  H  L  G :   N  F  D  D  A  E  E  I  L  T  A  A  L  K  K  A  E  E  C  F   : G  N  Y  H  P  K  V  G  I  I  L  T  C  I  A  L  M  Y  R  H  K  A  A  M  E  Q  S  S  S  L  L  I  Q  E  :  G  L  Y  R  R  A  I  E  V  L  K  A  P  P  L  E  V  E   : G  V  V  A  T  R  S  R  R  D  I  L  A  L  A  R   : G  G  Y  A  E  T  L  I  V  Q  Q  N  R  K  A  E  G  E  K  L  K  Q  W  A  E  T  A  W  T  S  R  R  L  S  L  A  E  A  L  E  S  S  A  K  V  S  V  I  D  T  R  I  S  R  V  L  *  F  V  S  F  L  D  T  L  R  S  S  T  H  K  Y  I  Y  I  L  F  V  D  M  I  Y  M  L  *  T  T  Q  E  I  S  K  F  S  *  I  M  N  V  L  L  L  Y  I   : N  K  N  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0317H24.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87365" stop="87572"/>
                    <exon start="90097" stop="90208"/>
                    <exon start="90311" stop="90384"/>
                    <exon start="90459" stop="90505"/>
                    <exon start="90605" stop="90755"/>
                    <exon start="90840" stop="90884"/>
                    <exon start="90954" stop="91158"/>
                    <exon start="91247" stop="91308"/>
                    <exon start="91384" stop="91484"/>
                    <exon start="91898" stop="91952"/>
                    <exon start="92041" stop="92088"/>
                    <exon start="93116" stop="93285"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1275</number_coding_nucleotides>
                  <number_encoded_amino_acids>425</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFAESFTMFRIGAKLYRAARIGGSAVSDFRSPSTRFFSINNNVNTGFKTNPVALQMINYALSLARAQKSDESYAQAQLVLEQCHSTQSDESAKGLVMLAMSTLFSERGNFSEAIEKLQKIQDLGLSTLAVRVAASEALAGLYLESYQDDFSSATADMCLQLLETIRLEIGGGGSDILEARAKALKGLVELVHGNAESAESFFEGAQGDKGCFGNVALSFGEFLHCKRNSQMARELYQRAMQDVSERKDFTDSQSISACNMNLEETLLGATCALGQLEAHLGNFDDAEEILTAALKKAEECFGNYHPKVGIILTCIALMYRHKAAMEQSSSLLIQEGLYRRAIEVLKAPPLEVEGVVATRSRRDILALARGGYAETLIVQQNRKAEGEKLKQWAETAWTSRRLSLAEALESSAKVSVIDTRISRVL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="93145" e_stop="93389"/>
            <exon e_start="93445" e_stop="93453"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.831" e_score="1.000"/>
          <exon-only e_score="0.667"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="93145" e_stop="93389" e_length="245"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.831">
            <gDNA_intron_boundary i_start="93390" i_stop="93444" i_length="55"/>
          </intron>
          <exon e_serial="2" e_score="0.667">
            <gDNA_exon_boundary e_start="93445" e_stop="93453" e_length="9"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93145" stop="93389"/>
              <exon start="93445" stop="93452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371862" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93146" stop="93389"/>
              <exon start="93445" stop="93453"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93146" stop="93389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287187" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAAACAGAAAAGCAGAAGGTGAAAAACTGAAGCAGTGGGCTGAAACAGCTTGGACAAGTCGCAGATTATCACTCGCGGAGGCACTAGAGTCATCAGCCAAAGTGTCTGTCATAGATACTCGAATAAGCCGAGTCCTGTAGTTTGTTTCCTTCCTTGACACATTACGTTCATCAACTCACAAGTATATCTATATACTTTTTGTAGATATGATATATATGCTCTAAACAACACAAGAGATTTCGAA : AAATTTAAA</gDNA_template>
            <first_frame> Q  N  R  K  A  E  G  E  K  L  K  Q  W  A  E  T  A  W  T  S  R  R  L  S  L  A  E  A  L  E  S  S  A  K  V  S  V  I  D  T  R  I  S  R  V  L  *  F  V  S  F  L  D  T  L  R  S  S  T  H  K  Y  I  Y  I  L  F  V  D  M  I  Y  M  L  *  T  T  Q  E  I  S  K :   N  L   </first_frame>
            <second_frame>  K  T  E  K  Q  K  V  K  N  *  S  S  G  L  K  Q  L  G  Q  V  A  D  Y  H  S  R  R  H  *  S  H  Q  P  K  C  L  S  *  I  L  E  *  A  E  S  C  S  L  F  P  S  L  T  H  Y  V  H  Q  L  T  S  I  S  I  Y  F  L  *  I  *  Y  I  C  S  K  Q  H  K  R  F  R   : K  I  *  </second_frame>
            <third_frame>   K  Q  K  S  R  R  *  K  T  E  A  V  G  *  N  S  L  D  K  S  Q  I  I  T  R  G  G  T  R  V  I  S  Q  S  V  C  H  R  Y  S  N  K  P  S  P  V  V  C  F  L  P  *  H  I  T  F  I  N  S  Q  V  Y  L  Y  T  F  C  R  Y  D  I  Y  A  L  N  N  T  R  D  F  E  :  K  F  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0317H24.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="93746" PGL_stop="89978"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="93746" e_stop="93624"/>
            <exon e_start="93534" e_stop="93395"/>
            <exon e_start="90007" e_stop="89978"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.534" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.964"/>
          <exon-only e_score="0.800"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="93746" e_stop="93624" e_length="123"/>
          </exon>
          <intron i_serial="1" don_prob="0.534" acc_prob="0.999">
            <gDNA_intron_boundary i_start="93623" i_stop="93535" i_length="89"/>
          </intron>
          <exon e_serial="2" e_score="0.964">
            <gDNA_exon_boundary e_start="93534" e_stop="93395" e_length="140"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="93394" i_stop="90008" i_length="3387"/>
          </intron>
          <exon e_serial="3" e_score="0.800">
            <gDNA_exon_boundary e_start="90007" e_stop="89978" e_length="30"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93746" stop="93624"/>
              <exon start="93534" stop="93395"/>
              <exon start="90007" stop="89978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218194" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTGGAGTTGCCAAAAGAAGTACCAAAGTTGAGCAAACCCCTTTTGGGTTTTACTAATACTGCTGAGATATGGAACTCTAGAGCTTGTATGATTGGTCTTATTGGTACATTTATTGTGGAATTG : ATTTTCAACAAGGGAATTCTTGAAATGATTGGTGTAGAAATTGGAAAAGGCCTTGATATTCCTCTCTAAATGTTGTGAATCTTTAAATTTCTTCATGCAAAATTCAGTAATGTACAACAGTAATACATTCATTATTCAAG : TAATAAAAAAAAGGAAAAAAAGGAAAAAAA</gDNA_template>
            <first_frame> V  E  L  P  K  E  V  P  K  L  S  K  P  L  L  G  F  T  N  T  A  E  I  W  N  S  R  A  C  M  I  G  L  I  G  T  F  I  V  E  L  :  I  F  N  K  G  I  L  E  M  I  G  V  E  I  G  K  G  L  D  I  P  L  *  M  L  *  I  F  K  F  L  H  A  K  F  S  N  V  Q  Q  *  Y  I  H  Y  S  S :   N  K  K  K  E  K  K  E  K   </first_frame>
            <second_frame>  W  S  C  Q  K  K  Y  Q  S  *  A  N  P  F  W  V  L  L  I  L  L  R  Y  G  T  L  E  L  V  *  L  V  L  L  V  H  L  L  W  N  * :   F  S  T  R  E  F  L  K  *  L  V  *  K  L  E  K  A  L  I  F  L  S  K  C  C  E  S  L  N  F  F  M  Q  N  S  V  M  Y  N  S  N  T  F  I  I  Q   : V  I  K  K  R  K  K  R  K  K  </second_frame>
            <third_frame>   G  V  A  K  R  S  T  K  V  E  Q  T  P  F  G  F  Y  *  Y  C  *  D  M  E  L  *  S  L  Y  D  W  S  Y  W  Y  I  Y  C  G  I   : D  F  Q  Q  G  N  S  *  N  D  W  C  R  N  W  K  R  P  *  Y  S  S  L  N  V  V  N  L  *  I  S  S  C  K  I  Q  *  C  T  T  V  I  H  S  L  F  K  :  *  *  K  K  G  K  K  G  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0317H24.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="96049" PGL_stop="95889"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="96049" e_stop="95889"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.925"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.925">
            <gDNA_exon_boundary e_start="96049" e_stop="95889" e_length="161"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96049" stop="95889"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E609560" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTGTACTCTTTTGGAGTGAAATAAATATTGGTTGGTTGTGTCCGAGGAGTAGGCAAAAGAAAACAAAAGTTTGCCGAACCTCGTTAATTCCTGGTGTTCTTTCTCTTATTGTCTCATTTACTATTTATTAGCTACCTTTAGATATAATAGTTGTGATTCC</gDNA_template>
            <first_frame> L  V  L  F  W  S  E  I  N  I  G  W  L  C  P  R  S  R  Q  K  K  T  K  V  C  R  T  S  L  I  P  G  V  L  S  L  I  V  S  F  T  I  Y  *  L  P  L  D  I  I  V  V  I   </first_frame>
            <second_frame>  L  Y  S  F  G  V  K  *  I  L  V  G  C  V  R  G  V  G  K  R  K  Q  K  F  A  E  P  R  *  F  L  V  F  F  L  L  L  S  H  L  L  F  I  S  Y  L  *  I  *  *  L  *  F  </second_frame>
            <third_frame>   C  T  L  L  E  *  N  K  Y  W  L  V  V  S  E  E  *  A  K  E  N  K  S  L  P  N  L  V  N  S  W  C  S  F  S  Y  C  L  I  Y  Y  L  L  A  T  F  R  Y  N  S  C  D  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0317H24.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 440 chains have been computed
$ 
$ memory statistics:
$ 1097888 bytes spliced alignments in total
$ 170 spliced alignments have been stored
$ 6458 bytes was the average size of a spliced alignment
$ 29104 bytes predicted gene locations in total
$ 17 predicted gene locations have been stored
$ 1712 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 510 backtrace matrices have been allocated
$ 
$ date finished: 2009-02-23 14:49:37
-->
