<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 13:08:33"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09SLe0001L13-oFxIK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C09SLe0001L13-oFxIK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0001L13-oFxIK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E698998" ref_strand="+" ref_description="SGN-E698998 [FA08BA03]">
      <seq>cgattagggggagatgatcatgatccttccaaggcagctgtacaagcatcatcatcagcactgctggcaaggattttggtgatgaacacgaattatcttgcacagctaacttctgatccatcactgtctatacaccttcagaaatctggttttcctagtgaagaaaacatactcctttgcctcgtcgacatgtggcttgaaaaggttgacaatgttacctctttccagaagaagacaattggtttggccctctctataattctgactttgaggttgcctcaagtacttgataaacttgatcagattatgagtgtatgtacaagtgttataatgggtggaagtgaggatttaagtgaagaagagtctagtagtgacaatgtaagctctagcaaacctcatgtgccaagcaaggagttgaggaggagacagatgaaactctcggacccaataaaccagatttcattggagaactcagtgagagacaatcttcaaacttgttcatctcttcatggggaatcctttaatgcagtcattggtagattgcacccttcagtactcaatcaattaaaacaagcattgaagatgccatgagttaaatagtgggcgtcaattcttgatgttattttctaagttggtcttttgagttcaatgatctcaccaaggcgtaagaaaggtctcacctagaagcatgctgctgcgtcgttattcatgaagttccattttttttgcccctattgtttggctggattgttgttgtcctgggtgggttgttttgccctagttgtgcagggggagagaggaggtgttgctattaagggcattctccacttacccacccattttttctccccatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0001L13-oFxIK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0001L13.1" temp_strand="+" temp_description="C09SLe0001L13.1  AC232936.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0001L13 upload_account_name:spain (1 - 25001)">
        <position start="5724" stop="8988"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6023" g_stop="6225" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6226" i_stop="6907" i_length="682">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6908" g_stop="7014" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="311" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7015" i_stop="7127" i_length="113">
            <donor d_prob="0.882" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7128" g_stop="7184" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="368" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7185" i_stop="7278" i_length="94">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7279" g_stop="7339" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="429" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7340" i_stop="7423" i_length="84">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7424" g_stop="7667" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="673" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7668" i_stop="8507" i_length="840">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="8508" g_stop="8688" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="674" r_stop="854" r_length="181" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0001L13.1" gen_strand="+" ref_id="SGN-E698998" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>853</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0001L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698998" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6023" e_stop="6225"/>
          <exon e_start="6908" e_stop="7014"/>
          <exon e_start="7128" e_stop="7184"/>
          <exon e_start="7279" e_stop="7339"/>
          <exon e_start="7424" e_stop="7667"/>
          <exon e_start="8508" e_stop="8688"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACT-GGGGGAGATGATCATGATCCTTCCAAGGCAGCTGTAAAAGCATCATCATCAGCACTGCTGGCAAGGATTTTGGTGATGAACACGAATTATCTTGCACAGCTAACTTCTGATCCATCACTGTCTATACACCTTCAGAAATCTGGTTTTCCTAGTGAAGAAAACATACTCCTTTGCCTCGTCGACATGTGGCTTGAAAAGGTGAGTTAAATGATTAAATTTGGAGTTCGATAGATATCATTGTGATTAATGGTTTTCTTTAGAAATGGTAAGGTGTGTTCTTGGTTTGTCTGTTCTGCTGTATCAAGGTGCAAATTTGTGAGGCATTAACCATTGATCCCAGTTGAGCACTGGGTTGTCAAGGGTGACCCTGAAGGAAGGTTCAAAACGGGCCCTTCAGTATCACCATCAAGGTTTTAAGACACATTTCCTTGCCAATGAGCCTCTTCTTAAGAGGCAACTCTAAACAATTGATCTTTCACTTTATCATATTTTTTTTAATTTCTTACTGGTTGAGATTGTCCTCCAAACTTTCTTCAATGATTTGTGCCTTCCTTTACCCTAACTTGACTTTAGATCCCTCAACTCCCCTTTTGTTTTCTCCTTCTGCTTCTTCAGCATCCAGAATTACCTTTTCCAGTTCATGAAGGAGCAGGCCATCATCTGTAAATTATTTATCCTTTCTTTATTGTGGGTTAATGTTGTTAATTCTATATGGCTGGAACTTAGTGGTCTTGCATCTTCTCAATCCTTTTATAGAATGTTTTGGGAAGTTTAGCCTGAATTTTTTTTTTGAACTTGGTTCTGATAACAACTTTGTGTGGTGTCCCTCACCTGACTTTTTATGTTATTGTTGGTCTTTTGTTTTGTGAAATTTTCTCAGGTTGACAATGTTACCTCTTTCCAGAAGAAGACAATTGGTTTGGCCCTCTCTATAATTCTGACTTTGAGGTTGCCTCAAGTACTTGATAAACTTGATCAGATTATGAGGTATTTGATTGAATTTGTAATCGTGAGATTTATTTATGTATTTCGGTTGATCATTATCCTAATCTGATATGTATGTTTTGTTTATGCTAATCTTGCCTCTATGCTTTTGGTAGTGTATGTACAAGTGTTATAATGGGTGGAAGTGAGGATTTAAGTGAAGAAGAGTCTAGGTATGTCTGATAATCTTCCTTTTTTACTTTAATGGCTCTTGAGATTTTGACAACTGATGAGACTGCATTTGCATTATAAAATGTAAAACCACAGTAGTGACAATGTAAGCTCTAGCAAACCTCATGTGCCAAGCAAGGAGTTGAGGAGGAGACAGGTAATTGGTGCTTATACTTATAAATAAATACGGCAATGTAGGGTTTTTCCGTATTGGTTTCTTAGTGAGAATTTTCTTTTTTAGATGAAACTCTCGGACCCAATAAACCAGATTTCATTGGAGAACTCAGTGAGAGACAATCTTCAAACTTGTTCATCTCTTCATGGGGAATCCTTTAATGCAGTCATTGGTAGATTGCACCCTTCAGTACTCAATCAATTAAAACAAGCATTGAAGATGCCATGAGTTAAATAGTGGGCGTCAATTCTTGATGTTATTTTCTAAGTTGGTCTTTTGAGTTCAATGATCTCACCAAGGCGTAAGAAAGGTCAGTCATTCTCTATATGGATGCATTTAAGTTTCTTATTTTTCCTTGATCCCCAAATACATATTTTTTTGTTTAATATTATGTGGACATATATTGAAGGGAGGTGCATATATCATGGCAATGCATCTGTTATAATTTAAGAGAATACATGCAGTAGTAAATGATTATAATGAAACCGGTGGTGCAGTGGATGTGGTTGCTCCTCTCGTAATCAGAGGTTTCGGGTTCGAGCCCTGGATATGGAAAAATCCTTGGTAGGGAGAGCTTTCACCTGAATGGGGGCCTATGCGTCGGGAATCTGGATTAGTCCAGCTTCCGGTGCTAACCTTGATATTAGGGTGTTTTCTTGATAAAGATGGATAAACATGTGATATGTCTCTAACATCTTTTGGTATTTGCTCTCAAGTATGAATGAACAAAAATGGTAGAAGGGACGCGAAGCATTATGCTGCAAAATTTCCTTCACATTCAAATATAGTTTGTTTTTAAGCCCAAGTAAATCATTTCCTATTATTTTGTAAAATGAAAATGACTAAAAAGCTAGCAGAAATTGGAATTACATGGAGATTAAATAAATCATAATGTAGTCCAGTGGTTTGTGAAGTTCATATTTTATTGAAATAGTAAGGTATACGTTTCTTAAGTTATTTGATTTACTTGTGACTTACAGCTGATCCTTGCAGTGTGCAAAACTTCTATTGTGCTTCTCATTTTAACTCATTATGAGACTTTTTTCCTTAGTTGACTATCTTCAGTCTTAAATTGACCCTTATATACTTTTCCCACATCTCTGGCCATGCTTTACTAAGGTCAAAACTGATGTATTCTTCTACTGTCCAGGTCTCACCTAGAAGCATGCTGCTGCGTCGTTATTCATGAAGTTCCATTTTTTTTGCCCCTATTGTTTGGCTGGATTGTTGTTGTCCTGGGTGGGTTGTTTTGCCCTAGTTGTGCAGGGGGAGAGAGGAGGTGTTGCTATTAAGGGCATTCTCCACTTAGCCACCCAATTTTTCTCCCCATT</genome_strand>
        <mrna_strand>CGATTAGGGGGAGATGATCATGATCCTTCCAAGGCAGCTGTACAAGCATCATCATCAGCACTGCTGGCAAGGATTTTGGTGATGAACACGAATTATCTTGCACAGCTAACTTCTGATCCATCACTGTCTATACACCTTCAGAAATCTGGTTTTCCTAGTGAAGAAAACATACTCCTTTGCCTCGTCGACATGTGGCTTGAAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGACAATGTTACCTCTTTCCAGAAGAAGACAATTGGTTTGGCCCTCTCTATAATTCTGACTTTGAGGTTGCCTCAAGTACTTGATAAACTTGATCAGATTATGAG.................................................................................................................TGTATGTACAAGTGTTATAATGGGTGGAAGTGAGGATTTAAGTGAAGAAGAGTCTAG..............................................................................................TAGTGACAATGTAAGCTCTAGCAAACCTCATGTGCCAAGCAAGGAGTTGAGGAGGAGACAG....................................................................................ATGAAACTCTCGGACCCAATAAACCAGATTTCATTGGAGAACTCAGTGAGAGACAATCTTCAAACTTGTTCATCTCTTCATGGGGAATCCTTTAATGCAGTCATTGGTAGATTGCACCCTTCAGTACTCAATCAATTAAAACAAGCATTGAAGATGCCATGAGTTAAATAGTGGGCGTCAATTCTTGATGTTATTTTCTAAGTTGGTCTTTTGAGTTCAATGATCTCACCAAGGCGTAAGAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCACCTAGAAGCATGCTGCTGCGTCGTTATTCATGAAGTTCCATTTTTTTTGCCCCTATTGTTTGGCTGGATTGTTGTTGTCCTGGGTGGGTTGTTTTGCCCTAGTTGTGCAGGGGGAGAGAGGAGGTGTTGCTATTAAGGGCATTCTCCACTTACCCACCCATTTTTTCTCCCCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0001L13-oFxIK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E738568" ref_strand="+" ref_description="SGN-E738568 [LC14AF07]">
      <seq>cactaattgtcttcttctggaaagaggtaacattggtttggccctctctataattctgactttgaggttgcctcaagtacttgataaacttgatcagattatgagtgtatgtacaagtgttataatgggtggaagtgaggatttaagtgaagaagagtctagtagtgacaatgtaagctctagcaaacctcatgtgccaagcaaggagttgaggaggagacagatgaaactctcggacccaataaaccagatttcattggagaactcagtgagagacaatcttcaaacttgttcatctcttcatggggaatcctttaatgcagtcattggtagattgcacccttcagtactcaatcaattaaaacaagcattgaagatgccatgagttaaatagtgggcgtcaattcttgatgttattttctaagttggtcttttgagttcaatgatctcaccaaggcgtaagaaaggtctcacctagaagcatgctgctgcgtcgttattcatgaagttccattttttttgcccctattgtttggctggattgttgttgtcctgggtgggttgttttgccctagttgtgcagggggagagaggaggtgttgctattaagggcattctccacttagccacccaatttttctccccattcgttcggggtgcgagcttgtgttgtaaatagcatgatcctctcatgtcgtggtttttaaggcataaaggatcagagcttgaggttgtaatactggatagtgtgcagtcaccatttgctcaaagcaggaaatagggaccaatgacaattcaaacggcatttaccaactattctagttattgcgcttgtggctttttgaattttatttctttgacgtgtttcaaatttatcccatacttttaaatattgtctaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0001L13-oFxIK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0001L13.1" temp_strand="+" temp_description="C09SLe0001L13.1  AC232936.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0001L13 upload_account_name:spain (1 - 25001)">
        <position start="6630" stop="23118"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6932" g_stop="7014" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="105" r_length="81" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7015" i_stop="7127" i_length="113">
            <donor d_prob="0.882" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7128" g_stop="7184" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="162" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7185" i_stop="7278" i_length="94">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7279" g_stop="7339" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="223" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7340" i_stop="7423" i_length="84">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7424" g_stop="7667" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="467" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7668" i_stop="8507" i_length="840">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="8508" g_stop="8941" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="901" r_length="434" r_score="0.998"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="8942" i_stop="9038" i_length="97">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.838" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="9039" g_stop="9053" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="902" r_stop="916" r_length="15" r_score="0.600"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0001L13.1" gen_strand="+" ref_id="SGN-E738568" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>894</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0001L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738568" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6932" e_stop="7014"/>
          <exon e_start="7128" e_stop="7184"/>
          <exon e_start="7279" e_stop="7339"/>
          <exon e_start="7424" e_stop="7667"/>
          <exon e_start="8508" e_stop="8941"/>
          <exon e_start="9039" e_stop="9053"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGACAATTGGTTTGGCCCTCTCTATAATTCTGACTTTGAGGTTGCCTCAAGTACTTGATAAACTTGATCAGATTATGAGGTATTTGATTGAATTTGTAATCGTGAGATTTATTTATGTATTTCGGTTGATCATTATCCTAATCTGATATGTATGTTTTGTTTATGCTAATCTTGCCTCTATGCTTTTGGTAGTGTATGTACAAGTGTTATAATGGGTGGAAGTGAGGATTTAAGTGAAGAAGAGTCTAGGTATGTCTGATAATCTTCCTTTTTTACTTTAATGGCTCTTGAGATTTTGACAACTGATGAGACTGCATTTGCATTATAAAATGTAAAACCACAGTAGTGACAATGTAAGCTCTAGCAAACCTCATGTGCCAAGCAAGGAGTTGAGGAGGAGACAGGTAATTGGTGCTTATACTTATAAATAAATACGGCAATGTAGGGTTTTTCCGTATTGGTTTCTTAGTGAGAATTTTCTTTTTTAGATGAAACTCTCGGACCCAATAAACCAGATTTCATTGGAGAACTCAGTGAGAGACAATCTTCAAACTTGTTCATCTCTTCATGGGGAATCCTTTAATGCAGTCATTGGTAGATTGCACCCTTCAGTACTCAATCAATTAAAACAAGCATTGAAGATGCCATGAGTTAAATAGTGGGCGTCAATTCTTGATGTTATTTTCTAAGTTGGTCTTTTGAGTTCAATGATCTCACCAAGGCGTAAGAAAGGTCAGTCATTCTCTATATGGATGCATTTAAGTTTCTTATTTTTCCTTGATCCCCAAATACATATTTTTTTGTTTAATATTATGTGGACATATATTGAAGGGAGGTGCATATATCATGGCAATGCATCTGTTATAATTTAAGAGAATACATGCAGTAGTAAATGATTATAATGAAACCGGTGGTGCAGTGGATGTGGTTGCTCCTCTCGTAATCAGAGGTTTCGGGTTCGAGCCCTGGATATGGAAAAATCCTTGGTAGGGAGAGCTTTCACCTGAATGGGGGCCTATGCGTCGGGAATCTGGATTAGTCCAGCTTCCGGTGCTAACCTTGATATTAGGGTGTTTTCTTGATAAAGATGGATAAACATGTGATATGTCTCTAACATCTTTTGGTATTTGCTCTCAAGTATGAATGAACAAAAATGGTAGAAGGGACGCGAAGCATTATGCTGCAAAATTTCCTTCACATTCAAATATAGTTTGTTTTTAAGCCCAAGTAAATCATTTCCTATTATTTTGTAAAATGAAAATGACTAAAAAGCTAGCAGAAATTGGAATTACATGGAGATTAAATAAATCATAATGTAGTCCAGTGGTTTGTGAAGTTCATATTTTATTGAAATAGTAAGGTATACGTTTCTTAAGTTATTTGATTTACTTGTGACTTACAGCTGATCCTTGCAGTGTGCAAAACTTCTATTGTGCTTCTCATTTTAACTCATTATGAGACTTTTTTCCTTAGTTGACTATCTTCAGTCTTAAATTGACCCTTATATACTTTTCCCACATCTCTGGCCATGCTTTACTAAGGTCAAAACTGATGTATTCTTCTACTGTCCAGGTCTCACCTAGAAGCATGCTGCTGCGTCGTTATTCATGAAGTTCCATTTTTTTTGCCCCTATTGTTTGGCTGGATTGTTGTTGTCCTGGGTGGGTTGTTTTGCCCTAGTTGTGCAGGGGGAGAGAGGAGGTGTTGCTATTAAGGGCATTCTCCACTTAGCCACCCAATTTTTCTCCCCATTCGTTCGGGGTGCGAGCTTGTGTTGTAAATAGCATGATCCTCTCATGTCGTGGTTTTTAAGGCATAAAGGATCAGAGCTTGAGGTTGTAATACTGGATAGTGTGCAGTCACCATTTGCTCAAAGCAGGAAATAGGGACCAATGACAATTCAAACGGCATTTACTAACTATTCTAGTTATTGCGCTTGTGGCTTTTTGAATTTTATTTCTTTGACGTGTTTCAAATTTATCCCATACTTTTAAATATTGTCTAAATTTATCCTCTCTTATATTGTCCGGTCATATTTACCCCTATAGTTATACTTTCTTTCCGTATGTACCCTTCTACTTTCATACTATATTTACCTTCTAGAGTTAACAGAAAAAG</genome_strand>
        <mrna_strand>AGGTA-AC-ATTGGTTTGGCCCTCTCTATAATTCTGACTTTGAGGTTGCCTCAAGTACTTGATAAACTTGATCAGATTATGAG.................................................................................................................TGTATGTACAAGTGTTATAATGGGTGGAAGTGAGGATTTAAGTGAAGAAGAGTCTAG..............................................................................................TAGTGACAATGTAAGCTCTAGCAAACCTCATGTGCCAAGCAAGGAGTTGAGGAGGAGACAG....................................................................................ATGAAACTCTCGGACCCAATAAACCAGATTTCATTGGAGAACTCAGTGAGAGACAATCTTCAAACTTGTTCATCTCTTCATGGGGAATCCTTTAATGCAGTCATTGGTAGATTGCACCCTTCAGTACTCAATCAATTAAAACAAGCATTGAAGATGCCATGAGTTAAATAGTGGGCGTCAATTCTTGATGTTATTTTCTAAGTTGGTCTTTTGAGTTCAATGATCTCACCAAGGCGTAAGAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCACCTAGAAGCATGCTGCTGCGTCGTTATTCATGAAGTTCCATTTTTTTTGCCCCTATTGTTTGGCTGGATTGTTGTTGTCCTGGGTGGGTTGTTTTGCCCTAGTTGTGCAGGGGGAGAGAGGAGGTGTTGCTATTAAGGGCATTCTCCACTTAGCCACCCAATTTTTCTCCCCATTCGTTCGGGGTGCGAGCTTGTGTTGTAAATAGCATGATCCTCTCATGTCGTGGTTTTTAAGGCATAAAGGATCAGAGCTTGAGGTTGTAATACTGGATAGTGTGCAGTCACCATTTGCTCAAAGCAGGAAATAGGGACCAATGACAATTCAAACGGCATTTACCAACTATTCTAGTTATTGCGCTTGTGGCTTTTTGAATTTTATTTCTTTGACGTGTTTCAAATTTATCCCATACTTTTAAATATTGTCTAAA.................................................................................................AAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0001L13-oFxIK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E738543" ref_strand="+" ref_description="SGN-E738543 [LC14AC09]">
      <seq>ccctttaaggcggacccaataaaccagatttcattggagaactcattgagagacaatcttcaaacttgttcatctcttcatggggaatcctttaatgcagtcattggtagattgcacccttcagtactcaatcaattaaaacaagcattgaagatgccatgagttaaatagtgggcgtcaattcttgatgttattttctaagttggtcttttgagttcaatgatctcaccaaggcgtaagaaaggtctcacctagaagcatgctgctgcgtcgttattcatgaagttccattttttttgcccctattgtttggctggattgttgttgtcctgggtgggttgttttgccctagttgtgcagggggagagaggaggtgttgctattaagggcattctccacttagccacccaatttttctccccattcgttcggggtgcgagcttgtgttgtaaatagcatgatcctctcatgtcgtggtttttaaggcataaaggatcagagcttgaggttgtaatactggatagtgtgcagtcaccatttgctcaaagcaggaaatagggaccaatgacaattcaaacggcatttaccaactattctagttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0001L13-oFxIK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0001L13.1" temp_strand="+" temp_description="C09SLe0001L13.1  AC232936.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0001L13 upload_account_name:spain (1 - 25001)">
        <position start="7134" stop="23118"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7424" g_stop="7667" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="3" r_stop="244" r_length="242" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7668" i_stop="8507" i_length="840">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8508" g_stop="8864" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="601" r_length="357" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8865" i_stop="9038" i_length="174">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.838" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9039" g_stop="9056" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="602" r_stop="619" r_length="18" r_score="0.556"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0001L13.1" gen_strand="+" ref_id="SGN-E738543" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0001L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738543" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7424" e_stop="7667"/>
          <exon e_start="8508" e_stop="8864"/>
          <exon e_start="9039" e_stop="9056"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAAACTCTCGGACCCAATAAACCAGATTTCATTGGAGAACTCAGTGAGAGACAATCTTCAAACTTGTTCATCTCTTCATGGGGAATCCTTTAATGCAGTCATTGGTAGATTGCACCCTTCAGTACTCAATCAATTAAAACAAGCATTGAAGATGCCATGAGTTAAATAGTGGGCGTCAATTCTTGATGTTATTTTCTAAGTTGGTCTTTTGAGTTCAATGATCTCACCAAGGCGTAAGAAAGGTCAGTCATTCTCTATATGGATGCATTTAAGTTTCTTATTTTTCCTTGATCCCCAAATACATATTTTTTTGTTTAATATTATGTGGACATATATTGAAGGGAGGTGCATATATCATGGCAATGCATCTGTTATAATTTAAGAGAATACATGCAGTAGTAAATGATTATAATGAAACCGGTGGTGCAGTGGATGTGGTTGCTCCTCTCGTAATCAGAGGTTTCGGGTTCGAGCCCTGGATATGGAAAAATCCTTGGTAGGGAGAGCTTTCACCTGAATGGGGGCCTATGCGTCGGGAATCTGGATTAGTCCAGCTTCCGGTGCTAACCTTGATATTAGGGTGTTTTCTTGATAAAGATGGATAAACATGTGATATGTCTCTAACATCTTTTGGTATTTGCTCTCAAGTATGAATGAACAAAAATGGTAGAAGGGACGCGAAGCATTATGCTGCAAAATTTCCTTCACATTCAAATATAGTTTGTTTTTAAGCCCAAGTAAATCATTTCCTATTATTTTGTAAAATGAAAATGACTAAAAAGCTAGCAGAAATTGGAATTACATGGAGATTAAATAAATCATAATGTAGTCCAGTGGTTTGTGAAGTTCATATTTTATTGAAATAGTAAGGTATACGTTTCTTAAGTTATTTGATTTACTTGTGACTTACAGCTGATCCTTGCAGTGTGCAAAACTTCTATTGTGCTTCTCATTTTAACTCATTATGAGACTTTTTTCCTTAGTTGACTATCTTCAGTCTTAAATTGACCCTTATATACTTTTCCCACATCTCTGGCCATGCTTTACTAAGGTCAAAACTGATGTATTCTTCTACTGTCCAGGTCTCACCTAGAAGCATGCTGCTGCGTCGTTATTCATGAAGTTCCATTTTTTTTGCCCCTATTGTTTGGCTGGATTGTTGTTGTCCTGGGTGGGTTGTTTTGCCCTAGTTGTGCAGGGGGAGAGAGGAGGTGTTGCTATTAAGGGCATTCTCCACTTAGCCACCCAATTTTTCTCCCCATTCGTTCGGGGTGCGAGCTTGTGTTGTAAATAGCATGATCCTCTCATGTCGTGGTTTTTAAGGCATAAAGGATCAGAGCTTGAGGTTGTAATACTGGATAGTGTGCAGTCACCATTTGCTCAAAGCAGGAAATAGGGACCAATGACAATTCAAACGGCATTTACTAACTATTCTAGTTATTGCGCTTGTGGCTTTTTGAATTTTATTTCTTTGACGTGTTTCAAATTTATCCCATACTTTTAAATATTGTCTAAATTTATCCTCTCTTATATTGTCCGGTCATATTTACCCCTATAGTTATACTTTCTTTCCGTATGTACCCTTCTACTTTCATACTATATTTACCTTCTAGAGTTAACAGAAAAAGTTA</genome_strand>
        <mrna_strand>CTTTAA--GGCGGACCCAATAAACCAGATTTCATTGGAGAACTCATTGAGAGACAATCTTCAAACTTGTTCATCTCTTCATGGGGAATCCTTTAATGCAGTCATTGGTAGATTGCACCCTTCAGTACTCAATCAATTAAAACAAGCATTGAAGATGCCATGAGTTAAATAGTGGGCGTCAATTCTTGATGTTATTTTCTAAGTTGGTCTTTTGAGTTCAATGATCTCACCAAGGCGTAAGAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCACCTAGAAGCATGCTGCTGCGTCGTTATTCATGAAGTTCCATTTTTTTTGCCCCTATTGTTTGGCTGGATTGTTGTTGTCCTGGGTGGGTTGTTTTGCCCTAGTTGTGCAGGGGGAGAGAGGAGGTGTTGCTATTAAGGGCATTCTCCACTTAGCCACCCAATTTTTCTCCCCATTCGTTCGGGGTGCGAGCTTGTGTTGTAAATAGCATGATCCTCTCATGTCGTGGTTTTTAAGGCATAAAGGATCAGAGCTTGAGGTTGTAATACTGGATAGTGTGCAGTCACCATTTGCTCAAAGCAGGAAATAGGGACCAATGACAATTCAAACGGCATTTACCAACTATTCTAGTT..............................................................................................................................................................................AAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0001L13-oFxIK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E740963" ref_strand="+" ref_description="SGN-E740963 [LC23CF09]">
      <seq>cggaaactctcggacccaataaaccagatttcattggagaactcagtgagagacaatcttcaaacttgttcatctcttcatggggaatcctttaatgcagtcattggtagattgcacccttcagtactcaatcaattaaaacaagcattgaagatgccatgagttaaatagtgggcgtcaattcttgatgttattttctaagttggtcttttgagttcaatgatctcaccaaggcgtaagaaaggtctcacctagaagcatgctgctgcgtcgttattcatgaagttccattttttttgcccctattgtttggctggattgttgttgtcctgggtgggttgttttgccctagttgtgcagggggagagaggaggtgttgctattaagggcattctccacttagccacccaatttttctccccattcgttcggggtgcgagcttgtgttgtaaatagcatgatcctctcatgtcgtggtttttaaggcataaaggatcagagcttgaggttgtaatactggatagtgtgcagtcaccatttgctcaaagcaggaaatagggaccaatgacaattcaaacggcatttaccaactattctagttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0001L13-oFxIK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0001L13.1" temp_strand="+" temp_description="C09SLe0001L13.1  AC232936.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0001L13 upload_account_name:spain (1 - 25001)">
        <position start="7126" stop="23118"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7424" g_stop="7667" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="244" r_length="244" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7668" i_stop="8507" i_length="840">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8508" g_stop="8864" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="601" r_length="357" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8865" i_stop="9038" i_length="174">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.838" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9039" g_stop="9056" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="602" r_stop="619" r_length="18" r_score="0.556"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0001L13.1" gen_strand="+" ref_id="SGN-E740963" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0001L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740963" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7424" e_stop="7667"/>
          <exon e_start="8508" e_stop="8864"/>
          <exon e_start="9039" e_stop="9056"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAAACTCTCGGACCCAATAAACCAGATTTCATTGGAGAACTCAGTGAGAGACAATCTTCAAACTTGTTCATCTCTTCATGGGGAATCCTTTAATGCAGTCATTGGTAGATTGCACCCTTCAGTACTCAATCAATTAAAACAAGCATTGAAGATGCCATGAGTTAAATAGTGGGCGTCAATTCTTGATGTTATTTTCTAAGTTGGTCTTTTGAGTTCAATGATCTCACCAAGGCGTAAGAAAGGTCAGTCATTCTCTATATGGATGCATTTAAGTTTCTTATTTTTCCTTGATCCCCAAATACATATTTTTTTGTTTAATATTATGTGGACATATATTGAAGGGAGGTGCATATATCATGGCAATGCATCTGTTATAATTTAAGAGAATACATGCAGTAGTAAATGATTATAATGAAACCGGTGGTGCAGTGGATGTGGTTGCTCCTCTCGTAATCAGAGGTTTCGGGTTCGAGCCCTGGATATGGAAAAATCCTTGGTAGGGAGAGCTTTCACCTGAATGGGGGCCTATGCGTCGGGAATCTGGATTAGTCCAGCTTCCGGTGCTAACCTTGATATTAGGGTGTTTTCTTGATAAAGATGGATAAACATGTGATATGTCTCTAACATCTTTTGGTATTTGCTCTCAAGTATGAATGAACAAAAATGGTAGAAGGGACGCGAAGCATTATGCTGCAAAATTTCCTTCACATTCAAATATAGTTTGTTTTTAAGCCCAAGTAAATCATTTCCTATTATTTTGTAAAATGAAAATGACTAAAAAGCTAGCAGAAATTGGAATTACATGGAGATTAAATAAATCATAATGTAGTCCAGTGGTTTGTGAAGTTCATATTTTATTGAAATAGTAAGGTATACGTTTCTTAAGTTATTTGATTTACTTGTGACTTACAGCTGATCCTTGCAGTGTGCAAAACTTCTATTGTGCTTCTCATTTTAACTCATTATGAGACTTTTTTCCTTAGTTGACTATCTTCAGTCTTAAATTGACCCTTATATACTTTTCCCACATCTCTGGCCATGCTTTACTAAGGTCAAAACTGATGTATTCTTCTACTGTCCAGGTCTCACCTAGAAGCATGCTGCTGCGTCGTTATTCATGAAGTTCCATTTTTTTTGCCCCTATTGTTTGGCTGGATTGTTGTTGTCCTGGGTGGGTTGTTTTGCCCTAGTTGTGCAGGGGGAGAGAGGAGGTGTTGCTATTAAGGGCATTCTCCACTTAGCCACCCAATTTTTCTCCCCATTCGTTCGGGGTGCGAGCTTGTGTTGTAAATAGCATGATCCTCTCATGTCGTGGTTTTTAAGGCATAAAGGATCAGAGCTTGAGGTTGTAATACTGGATAGTGTGCAGTCACCATTTGCTCAAAGCAGGAAATAGGGACCAATGACAATTCAAACGGCATTTACTAACTATTCTAGTTATTGCGCTTGTGGCTTTTTGAATTTTATTTCTTTGACGTGTTTCAAATTTATCCCATACTTTTAAATATTGTCTAAATTTATCCTCTCTTATATTGTCCGGTCATATTTACCCCTATAGTTATACTTTCTTTCCGTATGTACCCTTCTACTTTCATACTATATTTACCTTCTAGAGTTAACAGAAAAAGTTA</genome_strand>
        <mrna_strand>CGGAAACTCTCGGACCCAATAAACCAGATTTCATTGGAGAACTCAGTGAGAGACAATCTTCAAACTTGTTCATCTCTTCATGGGGAATCCTTTAATGCAGTCATTGGTAGATTGCACCCTTCAGTACTCAATCAATTAAAACAAGCATTGAAGATGCCATGAGTTAAATAGTGGGCGTCAATTCTTGATGTTATTTTCTAAGTTGGTCTTTTGAGTTCAATGATCTCACCAAGGCGTAAGAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCACCTAGAAGCATGCTGCTGCGTCGTTATTCATGAAGTTCCATTTTTTTTGCCCCTATTGTTTGGCTGGATTGTTGTTGTCCTGGGTGGGTTGTTTTGCCCTAGTTGTGCAGGGGGAGAGAGGAGGTGTTGCTATTAAGGGCATTCTCCACTTAGCCACCCAATTTTTCTCCCCATTCGTTCGGGGTGCGAGCTTGTGTTGTAAATAGCATGATCCTCTCATGTCGTGGTTTTTAAGGCATAAAGGATCAGAGCTTGAGGTTGTAATACTGGATAGTGTGCAGTCACCATTTGCTCAAAGCAGGAAATAGGGACCAATGACAATTCAAACGGCATTTACCAACTATTCTAGTT..............................................................................................................................................................................AAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0001L13-oFxIK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E735311" ref_strand="+" ref_description="SGN-E735311 [LC01AA06]">
      <seq>cgattctctcggacccaataaaccagatttcattggagaactcagtgagagacaatcttcaaacttgttcatctcttcatggggaatcctttaatgcagtcattggtagattgcacccttcagtactcaatcaattaaaacaagcattgaagatgccatgagttaaatagtgggcgtcaattcttgatgttattttctaagttggtcttttgagttcaatgatctcaccaaggcgtaagaaaggtctcacctagaagcatgctgctgcgtcgttattcatgaagttccattttttttgcccctattgtttggctggattgttgttgtcctgggtgggttgttttgccctagttgtgcagggggagagaggaggtgttgctattaagggcattctccacttagccacccaatttttctccccattcgttcggggtgcgagcttgtgttgtaaatagcatgatcctctcatgtcgtggtttttaaggcataaaggatcagagcttgaggttgtaatactggatagtgtgcagtcaccatttgctcaaagcaggaaatagggaccaatgacaattcaaacggcatttaccaactattctagttanaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0001L13-oFxIK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0001L13.1" temp_strand="+" temp_description="C09SLe0001L13.1  AC232936.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0001L13 upload_account_name:spain (1 - 25001)">
        <position start="7126" stop="9165"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7425" g_stop="7667" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="243" r_length="243" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7668" i_stop="8507" i_length="840">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8508" g_stop="8864" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="600" r_length="357" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="601" polyA_stop="618"/>
      <MATCH_line gen_id="C09SLe0001L13.1" gen_strand="+" ref_id="SGN-E735311" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0001L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735311" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7425" e_stop="7667"/>
          <exon e_start="8508" e_stop="8864"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAACTCTCGGACCCAATAAACCAGATTTCATTGGAGAACTCAGTGAGAGACAATCTTCAAACTTGTTCATCTCTTCATGGGGAATCCTTTAATGCAGTCATTGGTAGATTGCACCCTTCAGTACTCAATCAATTAAAACAAGCATTGAAGATGCCATGAGTTAAATAGTGGGCGTCAATTCTTGATGTTATTTTCTAAGTTGGTCTTTTGAGTTCAATGATCTCACCAAGGCGTAAGAAAGGTCAGTCATTCTCTATATGGATGCATTTAAGTTTCTTATTTTTCCTTGATCCCCAAATACATATTTTTTTGTTTAATATTATGTGGACATATATTGAAGGGAGGTGCATATATCATGGCAATGCATCTGTTATAATTTAAGAGAATACATGCAGTAGTAAATGATTATAATGAAACCGGTGGTGCAGTGGATGTGGTTGCTCCTCTCGTAATCAGAGGTTTCGGGTTCGAGCCCTGGATATGGAAAAATCCTTGGTAGGGAGAGCTTTCACCTGAATGGGGGCCTATGCGTCGGGAATCTGGATTAGTCCAGCTTCCGGTGCTAACCTTGATATTAGGGTGTTTTCTTGATAAAGATGGATAAACATGTGATATGTCTCTAACATCTTTTGGTATTTGCTCTCAAGTATGAATGAACAAAAATGGTAGAAGGGACGCGAAGCATTATGCTGCAAAATTTCCTTCACATTCAAATATAGTTTGTTTTTAAGCCCAAGTAAATCATTTCCTATTATTTTGTAAAATGAAAATGACTAAAAAGCTAGCAGAAATTGGAATTACATGGAGATTAAATAAATCATAATGTAGTCCAGTGGTTTGTGAAGTTCATATTTTATTGAAATAGTAAGGTATACGTTTCTTAAGTTATTTGATTTACTTGTGACTTACAGCTGATCCTTGCAGTGTGCAAAACTTCTATTGTGCTTCTCATTTTAACTCATTATGAGACTTTTTTCCTTAGTTGACTATCTTCAGTCTTAAATTGACCCTTATATACTTTTCCCACATCTCTGGCCATGCTTTACTAAGGTCAAAACTGATGTATTCTTCTACTGTCCAGGTCTCACCTAGAAGCATGCTGCTGCGTCGTTATTCATGAAGTTCCATTTTTTTTGCCCCTATTGTTTGGCTGGATTGTTGTTGTCCTGGGTGGGTTGTTTTGCCCTAGTTGTGCAGGGGGAGAGAGGAGGTGTTGCTATTAAGGGCATTCTCCACTTAGCCACCCAATTTTTCTCCCCATTCGTTCGGGGTGCGAGCTTGTGTTGTAAATAGCATGATCCTCTCATGTCGTGGTTTTTAAGGCATAAAGGATCAGAGCTTGAGGTTGTAATACTGGATAGTGTGCAGTCACCATTTGCTCAAAGCAGGAAATAGGGACCAATGACAATTCAAACGGCATTTACTAACTATTCTAGTT</genome_strand>
        <mrna_strand>CGATTCTCTCGGACCCAATAAACCAGATTTCATTGGAGAACTCAGTGAGAGACAATCTTCAAACTTGTTCATCTCTTCATGGGGAATCCTTTAATGCAGTCATTGGTAGATTGCACCCTTCAGTACTCAATCAATTAAAACAAGCATTGAAGATGCCATGAGTTAAATAGTGGGCGTCAATTCTTGATGTTATTTTCTAAGTTGGTCTTTTGAGTTCAATGATCTCACCAAGGCGTAAGAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCACCTAGAAGCATGCTGCTGCGTCGTTATTCATGAAGTTCCATTTTTTTTGCCCCTATTGTTTGGCTGGATTGTTGTTGTCCTGGGTGGGTTGTTTTGCCCTAGTTGTGCAGGGGGAGAGAGGAGGTGTTGCTATTAAGGGCATTCTCCACTTAGCCACCCAATTTTTCTCCCCATTCGTTCGGGGTGCGAGCTTGTGTTGTAAATAGCATGATCCTCTCATGTCGTGGTTTTTAAGGCATAAAGGATCAGAGCTTGAGGTTGTAATACTGGATAGTGTGCAGTCACCATTTGCTCAAAGCAGGAAATAGGGACCAATGACAATTCAAACGGCATTTACCAACTATTCTAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0001L13-oFxIK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E738217" ref_strand="+" ref_description="SGN-E738217 [LC12DC02]">
      <seq>gatactctcggacccaataaaccagatttcattggagaactcagtgagagacaatcttcaaacttgttcatctcttcatggggaatcctttaatgcagtcattggtagattgcacccttcagtactcaatcaattaaaacaagcattgaagatgccatgagttaaatagtgggcgtcaattcttgatgttattttctaagttggtcttttgagttcaatgatctcaccaaggcgtaagaaaggtctcacctagaagcatgctgctgcgtcgttattcatgaagttccattttttttgcccctattgtttggctggattgttgttgtcctgggtgggttgttttgccctagttgtgcagggggagagaggaggtgttgctattaagggcattctccacttagccacccaatttttctccccattcgttcggggtgcgagcttgtgttgtaaatagcatgatcctctcatgtcgtggtttttaaggcataaaggatcagagcttgaggttgtaatactggatagtgtgcagtcaccatttgctcaaagcaggaaatagggaccaatgacaattcaaacggcatttaccaactattctagttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0001L13-oFxIK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0001L13.1" temp_strand="+" temp_description="C09SLe0001L13.1  AC232936.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0001L13 upload_account_name:spain (1 - 25001)">
        <position start="7126" stop="23118"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7426" g_stop="7667" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7668" i_stop="8507" i_length="840">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8508" g_stop="8864" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="599" r_length="357" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8865" i_stop="9038" i_length="174">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.838" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9039" g_stop="9056" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="600" r_stop="617" r_length="18" r_score="0.556"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0001L13.1" gen_strand="+" ref_id="SGN-E738217" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0001L13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738217" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7426" e_stop="7667"/>
          <exon e_start="8508" e_stop="8864"/>
          <exon e_start="9039" e_stop="9056"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACTCTCGGACCCAATAAACCAGATTTCATTGGAGAACTCAGTGAGAGACAATCTTCAAACTTGTTCATCTCTTCATGGGGAATCCTTTAATGCAGTCATTGGTAGATTGCACCCTTCAGTACTCAATCAATTAAAACAAGCATTGAAGATGCCATGAGTTAAATAGTGGGCGTCAATTCTTGATGTTATTTTCTAAGTTGGTCTTTTGAGTTCAATGATCTCACCAAGGCGTAAGAAAGGTCAGTCATTCTCTATATGGATGCATTTAAGTTTCTTATTTTTCCTTGATCCCCAAATACATATTTTTTTGTTTAATATTATGTGGACATATATTGAAGGGAGGTGCATATATCATGGCAATGCATCTGTTATAATTTAAGAGAATACATGCAGTAGTAAATGATTATAATGAAACCGGTGGTGCAGTGGATGTGGTTGCTCCTCTCGTAATCAGAGGTTTCGGGTTCGAGCCCTGGATATGGAAAAATCCTTGGTAGGGAGAGCTTTCACCTGAATGGGGGCCTATGCGTCGGGAATCTGGATTAGTCCAGCTTCCGGTGCTAACCTTGATATTAGGGTGTTTTCTTGATAAAGATGGATAAACATGTGATATGTCTCTAACATCTTTTGGTATTTGCTCTCAAGTATGAATGAACAAAAATGGTAGAAGGGACGCGAAGCATTATGCTGCAAAATTTCCTTCACATTCAAATATAGTTTGTTTTTAAGCCCAAGTAAATCATTTCCTATTATTTTGTAAAATGAAAATGACTAAAAAGCTAGCAGAAATTGGAATTACATGGAGATTAAATAAATCATAATGTAGTCCAGTGGTTTGTGAAGTTCATATTTTATTGAAATAGTAAGGTATACGTTTCTTAAGTTATTTGATTTACTTGTGACTTACAGCTGATCCTTGCAGTGTGCAAAACTTCTATTGTGCTTCTCATTTTAACTCATTATGAGACTTTTTTCCTTAGTTGACTATCTTCAGTCTTAAATTGACCCTTATATACTTTTCCCACATCTCTGGCCATGCTTTACTAAGGTCAAAACTGATGTATTCTTCTACTGTCCAGGTCTCACCTAGAAGCATGCTGCTGCGTCGTTATTCATGAAGTTCCATTTTTTTTGCCCCTATTGTTTGGCTGGATTGTTGTTGTCCTGGGTGGGTTGTTTTGCCCTAGTTGTGCAGGGGGAGAGAGGAGGTGTTGCTATTAAGGGCATTCTCCACTTAGCCACCCAATTTTTCTCCCCATTCGTTCGGGGTGCGAGCTTGTGTTGTAAATAGCATGATCCTCTCATGTCGTGGTTTTTAAGGCATAAAGGATCAGAGCTTGAGGTTGTAATACTGGATAGTGTGCAGTCACCATTTGCTCAAAGCAGGAAATAGGGACCAATGACAATTCAAACGGCATTTACTAACTATTCTAGTTATTGCGCTTGTGGCTTTTTGAATTTTATTTCTTTGACGTGTTTCAAATTTATCCCATACTTTTAAATATTGTCTAAATTTATCCTCTCTTATATTGTCCGGTCATATTTACCCCTATAGTTATACTTTCTTTCCGTATGTACCCTTCTACTTTCATACTATATTTACCTTCTAGAGTTAACAGAAAAAGTTA</genome_strand>
        <mrna_strand>GATACTCTCGGACCCAATAAACCAGATTTCATTGGAGAACTCAGTGAGAGACAATCTTCAAACTTGTTCATCTCTTCATGGGGAATCCTTTAATGCAGTCATTGGTAGATTGCACCCTTCAGTACTCAATCAATTAAAACAAGCATTGAAGATGCCATGAGTTAAATAGTGGGCGTCAATTCTTGATGTTATTTTCTAAGTTGGTCTTTTGAGTTCAATGATCTCACCAAGGCGTAAGAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCACCTAGAAGCATGCTGCTGCGTCGTTATTCATGAAGTTCCATTTTTTTTGCCCCTATTGTTTGGCTGGATTGTTGTTGTCCTGGGTGGGTTGTTTTGCCCTAGTTGTGCAGGGGGAGAGAGGAGGTGTTGCTATTAAGGGCATTCTCCACTTAGCCACCCAATTTTTCTCCCCATTCGTTCGGGGTGCGAGCTTGTGTTGTAAATAGCATGATCCTCTCATGTCGTGGTTTTTAAGGCATAAAGGATCAGAGCTTGAGGTTGTAATACTGGATAGTGTGCAGTCACCATTTGCTCAAAGCAGGAAATAGGGACCAATGACAATTCAAACGGCATTTACCAACTATTCTAGTT..............................................................................................................................................................................AAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>6</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="6023" PGL_stop="9056"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6023" e_stop="6225"/>
            <exon e_start="6908" e_stop="7014"/>
            <exon e_start="7128" e_stop="7184"/>
            <exon e_start="7279" e_stop="7339"/>
            <exon e_start="7424" e_stop="7667"/>
            <exon e_start="8508" e_stop="8864"/>
            <exon e_start="9039" e_stop="9056"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="0.975"/>
          <exon-intron don_prob="0.882" acc_prob="0.934" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.779" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.895" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.838" e_score="0.997"/>
          <exon-only e_score="0.556"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.975">
            <gDNA_exon_boundary e_start="6023" e_stop="6225" e_length="203"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="6226" i_stop="6907" i_length="682"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="6908" e_stop="7014" e_length="107"/>
          </exon>
          <intron i_serial="2" don_prob="0.882" acc_prob="0.934">
            <gDNA_intron_boundary i_start="7015" i_stop="7127" i_length="113"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="7128" e_stop="7184" e_length="57"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.779">
            <gDNA_intron_boundary i_start="7185" i_stop="7278" i_length="94"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="7279" e_stop="7339" e_length="61"/>
          </exon>
          <intron i_serial="4" don_prob="0.968" acc_prob="0.895">
            <gDNA_intron_boundary i_start="7340" i_stop="7423" i_length="84"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="7424" e_stop="7667" e_length="244"/>
          </exon>
          <intron i_serial="5" don_prob="0.981" acc_prob="0.964">
            <gDNA_intron_boundary i_start="7668" i_stop="8507" i_length="840"/>
          </intron>
          <exon e_serial="6" e_score="0.997">
            <gDNA_exon_boundary e_start="8508" e_stop="8864" e_length="357"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.838">
            <gDNA_intron_boundary i_start="8865" i_stop="9038" i_length="174"/>
          </intron>
          <exon e_serial="7" e_score="0.556">
            <gDNA_exon_boundary e_start="9039" e_stop="9056" e_length="18"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6023" stop="6225"/>
              <exon start="6908" stop="7014"/>
              <exon start="7128" stop="7184"/>
              <exon start="7279" stop="7339"/>
              <exon start="7424" stop="7667"/>
              <exon start="8508" stop="8688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698998" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7424" stop="7667"/>
              <exon start="8508" stop="8864"/>
              <exon start="9039" stop="9056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738543" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7424" stop="7667"/>
              <exon start="8508" stop="8864"/>
              <exon start="9039" stop="9056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740963" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7425" stop="7667"/>
              <exon start="8508" stop="8864"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735311" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7426" stop="7667"/>
              <exon start="8508" stop="8864"/>
              <exon start="9039" stop="9056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738217" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGACTGGGGGAGATGATCATGATCCTTCCAAGGCAGCTGTAAAAGCATCATCATCAGCACTGCTGGCAAGGATTTTGGTGATGAACACGAATTATCTTGCACAGCTAACTTCTGATCCATCACTGTCTATACACCTTCAGAAATCTGGTTTTCCTAGTGAAGAAAACATACTCCTTTGCCTCGTCGACATGTGGCTTGAAAAG : GTTGACAATGTTACCTCTTTCCAGAAGAAGACAATTGGTTTGGCCCTCTCTATAATTCTGACTTTGAGGTTGCCTCAAGTACTTGATAAACTTGATCAGATTATGAG : TGTATGTACAAGTGTTATAATGGGTGGAAGTGAGGATTTAAGTGAAGAAGAGTCTAG : TAGTGACAATGTAAGCTCTAGCAAACCTCATGTGCCAAGCAAGGAGTTGAGGAGGAGACAG : ATGAAACTCTCGGACCCAATAAACCAGATTTCATTGGAGAACTCAGTGAGAGACAATCTTCAAACTTGTTCATCTCTTCATGGGGAATCCTTTAATGCAGTCATTGGTAGATTGCACCCTTCAGTACTCAATCAATTAAAACAAGCATTGAAGATGCCATGAGTTAAATAGTGGGCGTCAATTCTTGATGTTATTTTCTAAGTTGGTCTTTTGAGTTCAATGATCTCACCAAGGCGTAAGAAAG : GTCTCACCTAGAAGCATGCTGCTGCGTCGTTATTCATGAAGTTCCATTTTTTTTGCCCCTATTGTTTGGCTGGATTGTTGTTGTCCTGGGTGGGTTGTTTTGCCCTAGTTGTGCAGGGGGAGAGAGGAGGTGTTGCTATTAAGGGCATTCTCCACTTAGCCACCCAATTTTTCTCCCCATTCGTTCGGGGTGCGAGCTTGTGTTGTAAATAGCATGATCCTCTCATGTCGTGGTTTTTAAGGCATAAAGGATCAGAGCTTGAGGTTGTAATACTGGATAGTGTGCAGTCACCATTTGCTCAAAGCAGGAAATAGGGACCAATGACAATTCAAACGGCATTTACTAACTATTCTAGTT : AGTTAACAGAAAAAGTTA</gDNA_template>
            <first_frame> *  L  G  E  M  I  M  I  L  P  R  Q  L  *  K  H  H  H  Q  H  C  W  Q  G  F  W  *  *  T  R  I  I  L  H  S  *  L  L  I  H  H  C  L  Y  T  F  R  N  L  V  F  L  V  K  K  T  Y  S  F  A  S  S  T  C  G  L  K  R :   L  T  M  L  P  L  S  R  R  R  Q  L  V  W  P  S  L  *  F  *  L  *  G  C  L  K  Y  L  I  N  L  I  R  L  *   : V  Y  V  Q  V  L  *  W  V  E  V  R  I  *  V  K  K  S  L   : V  V  T  M  *  A  L  A  N  L  M  C  Q  A  R  S  *  G  G  D  R :   *  N  S  R  T  Q  *  T  R  F  H  W  R  T  Q  *  E  T  I  F  K  L  V  H  L  F  M  G  N  P  L  M  Q  S  L  V  D  C  T  L  Q  Y  S  I  N  *  N  K  H  *  R  C  H  E  L  N  S  G  R  Q  F  L  M  L  F  S  K  L  V  F  *  V  Q  *  S  H  Q  G  V  R  K  :  V  S  P  R  S  M  L  L  R  R  Y  S  *  S  S  I  F  F  A  P  I  V  W  L  D  C  C  C  P  G  W  V  V  L  P  *  L  C  R  G  R  E  E  V  L  L  L  R  A  F  S  T  *  P  P  N  F  S  P  H  S  F  G  V  R  A  C  V  V  N  S  M  I  L  S  C  R  G  F  *  G  I  K  D  Q  S  L  R  L  *  Y  W  I  V  C  S  H  H  L  L  K  A  G  N  R  D  Q  *  Q  F  K  R  H  L  L  T  I  L  V  :  S  *  Q  K  K  L </first_frame>
            <second_frame>  D  W  G  R  *  S  *  S  F  Q  G  S  C  K  S  I  I  I  S  T  A  G  K  D  F  G  D  E  H  E  L  S  C  T  A  N  F  *  S  I  T  V  Y  T  P  S  E  I  W  F  S  *  *  R  K  H  T  P  L  P  R  R  H  V  A  *  K   : G  *  Q  C  Y  L  F  P  E  E  D  N  W  F  G  P  L  Y  N  S  D  F  E  V  A  S  S  T  *  *  T  *  S  D  Y  E  :  C  M  Y  K  C  Y  N  G  W  K  *  G  F  K  *  R  R  V  *  :  *  *  Q  C  K  L  *  Q  T  S  C  A  K  Q  G  V  E  E  E  T   : D  E  T  L  G  P  N  K  P  D  F  I  G  E  L  S  E  R  Q  S  S  N  L  F  I  S  S  W  G  I  L  *  C  S  H  W  *  I  A  P  F  S  T  Q  S  I  K  T  S  I  E  D  A  M  S  *  I  V  G  V  N  S  *  C  Y  F  L  S  W  S  F  E  F  N  D  L  T  K  A  *  E  R :   S  H  L  E  A  C  C  C  V  V  I  H  E  V  P  F  F  L  P  L  L  F  G  W  I  V  V  V  L  G  G  L  F  C  P  S  C  A  G  G  E  R  R  C  C  Y  *  G  H  S  P  L  S  H  P  I  F  L  P  I  R  S  G  C  E  L  V  L  *  I  A  *  S  S  H  V  V  V  F  K  A  *  R  I  R  A  *  G  C  N  T  G  *  C  A  V  T  I  C  S  K  Q  E  I  G  T  N  D  N  S  N  G  I  Y  *  L  F  *  L :   V  N  R  K  S   </second_frame>
            <third_frame>   T  G  G  D  D  H  D  P  S  K  A  A  V  K  A  S  S  S  A  L  L  A  R  I  L  V  M  N  T  N  Y  L  A  Q  L  T  S  D  P  S  L  S  I  H  L  Q  K  S  G  F  P  S  E  E  N  I  L  L  C  L  V  D  M  W  L  E  K  :  V  D  N  V  T  S  F  Q  K  K  T  I  G  L  A  L  S  I  I  L  T  L  R  L  P  Q  V  L  D  K  L  D  Q  I  M  S :   V  C  T  S  V  I  M  G  G  S  E  D  L  S  E  E  E  S  S :   S  D  N  V  S  S  S  K  P  H  V  P  S  K  E  L  R  R  R  Q  :  M  K  L  S  D  P  I  N  Q  I  S  L  E  N  S  V  R  D  N  L  Q  T  C  S  S  L  H  G  E  S  F  N  A  V  I  G  R  L  H  P  S  V  L  N  Q  L  K  Q  A  L  K  M  P  *  V  K  *  W  A  S  I  L  D  V  I  F  *  V  G  L  L  S  S  M  I  S  P  R  R  K  K   : G  L  T  *  K  H  A  A  A  S  L  F  M  K  F  H  F  F  C  P  Y  C  L  A  G  L  L  L  S  W  V  G  C  F  A  L  V  V  Q  G  E  R  G  G  V  A  I  K  G  I  L  H  L  A  T  Q  F  F  S  P  F  V  R  G  A  S  L  C  C  K  *  H  D  P  L  M  S  W  F  L  R  H  K  G  S  E  L  E  V  V  I  L  D  S  V  Q  S  P  F  A  Q  S  R  K  *  G  P  M  T  I  Q  T  A  F  T  N  Y  S  S   : *  L  T  E  K  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0001L13.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6025" stop="6225"/>
                    <exon start="6908" stop="7014"/>
                    <exon start="7128" stop="7184"/>
                    <exon start="7279" stop="7339"/>
                    <exon start="7424" stop="7585"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>585</number_coding_nucleotides>
                  <number_encoded_amino_acids>195</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TGGDDHDPSKAAVKASSSALLARILVMNTNYLAQLTSDPSLSIHLQKSGFPSEENILLCLVDMWLEKVDNVTSFQKKTIGLALSIILTLRLPQVLDKLDQIMSVCTSVIMGGSEDLSEEESSSDNVSSSKPHVPSKELRRRQMKLSDPINQISLENSVRDNLQTCSSLHGESFNAVIGRLHPSVLNQLKQALKMP*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0001L13.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8519" stop="8719"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KHAAASLFMKFHFFCPYCLAGLLLSWVGCFALVVQGERGGVAIKGILHLATQFFSPFVRGASLCCK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="6023" e_stop="6225"/>
            <exon e_start="6908" e_stop="7014"/>
            <exon e_start="7128" e_stop="7184"/>
            <exon e_start="7279" e_stop="7339"/>
            <exon e_start="7424" e_stop="7667"/>
            <exon e_start="8508" e_stop="8941"/>
            <exon e_start="9039" e_stop="9053"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="0.975"/>
          <exon-intron don_prob="0.882" acc_prob="0.934" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.779" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.895" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.838" e_score="0.998"/>
          <exon-only e_score="0.600"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.975">
            <gDNA_exon_boundary e_start="6023" e_stop="6225" e_length="203"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="6226" i_stop="6907" i_length="682"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="6908" e_stop="7014" e_length="107"/>
          </exon>
          <intron i_serial="2" don_prob="0.882" acc_prob="0.934">
            <gDNA_intron_boundary i_start="7015" i_stop="7127" i_length="113"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="7128" e_stop="7184" e_length="57"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.779">
            <gDNA_intron_boundary i_start="7185" i_stop="7278" i_length="94"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="7279" e_stop="7339" e_length="61"/>
          </exon>
          <intron i_serial="4" don_prob="0.968" acc_prob="0.895">
            <gDNA_intron_boundary i_start="7340" i_stop="7423" i_length="84"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="7424" e_stop="7667" e_length="244"/>
          </exon>
          <intron i_serial="5" don_prob="0.981" acc_prob="0.964">
            <gDNA_intron_boundary i_start="7668" i_stop="8507" i_length="840"/>
          </intron>
          <exon e_serial="6" e_score="0.998">
            <gDNA_exon_boundary e_start="8508" e_stop="8941" e_length="434"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.838">
            <gDNA_intron_boundary i_start="8942" i_stop="9038" i_length="97"/>
          </intron>
          <exon e_serial="7" e_score="0.600">
            <gDNA_exon_boundary e_start="9039" e_stop="9053" e_length="15"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6023" stop="6225"/>
              <exon start="6908" stop="7014"/>
              <exon start="7128" stop="7184"/>
              <exon start="7279" stop="7339"/>
              <exon start="7424" stop="7667"/>
              <exon start="8508" stop="8688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698998" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6932" stop="7014"/>
              <exon start="7128" stop="7184"/>
              <exon start="7279" stop="7339"/>
              <exon start="7424" stop="7667"/>
              <exon start="8508" stop="8941"/>
              <exon start="9039" stop="9053"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738568" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7425" stop="7667"/>
              <exon start="8508" stop="8864"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735311" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGACTGGGGGAGATGATCATGATCCTTCCAAGGCAGCTGTAAAAGCATCATCATCAGCACTGCTGGCAAGGATTTTGGTGATGAACACGAATTATCTTGCACAGCTAACTTCTGATCCATCACTGTCTATACACCTTCAGAAATCTGGTTTTCCTAGTGAAGAAAACATACTCCTTTGCCTCGTCGACATGTGGCTTGAAAAG : GTTGACAATGTTACCTCTTTCCAGAAGAAGACAATTGGTTTGGCCCTCTCTATAATTCTGACTTTGAGGTTGCCTCAAGTACTTGATAAACTTGATCAGATTATGAG : TGTATGTACAAGTGTTATAATGGGTGGAAGTGAGGATTTAAGTGAAGAAGAGTCTAG : TAGTGACAATGTAAGCTCTAGCAAACCTCATGTGCCAAGCAAGGAGTTGAGGAGGAGACAG : ATGAAACTCTCGGACCCAATAAACCAGATTTCATTGGAGAACTCAGTGAGAGACAATCTTCAAACTTGTTCATCTCTTCATGGGGAATCCTTTAATGCAGTCATTGGTAGATTGCACCCTTCAGTACTCAATCAATTAAAACAAGCATTGAAGATGCCATGAGTTAAATAGTGGGCGTCAATTCTTGATGTTATTTTCTAAGTTGGTCTTTTGAGTTCAATGATCTCACCAAGGCGTAAGAAAG : GTCTCACCTAGAAGCATGCTGCTGCGTCGTTATTCATGAAGTTCCATTTTTTTTGCCCCTATTGTTTGGCTGGATTGTTGTTGTCCTGGGTGGGTTGTTTTGCCCTAGTTGTGCAGGGGGAGAGAGGAGGTGTTGCTATTAAGGGCATTCTCCACTTAGCCACCCAATTTTTCTCCCCATTCGTTCGGGGTGCGAGCTTGTGTTGTAAATAGCATGATCCTCTCATGTCGTGGTTTTTAAGGCATAAAGGATCAGAGCTTGAGGTTGTAATACTGGATAGTGTGCAGTCACCATTTGCTCAAAGCAGGAAATAGGGACCAATGACAATTCAAACGGCATTTACTAACTATTCTAGTTATTGCGCTTGTGGCTTTTTGAATTTTATTTCTTTGACGTGTTTCAAATTTATCCCATACTTTTAAATATTGTCTAAA : AGTTAACAGAAAAAG</gDNA_template>
            <first_frame> *  L  G  E  M  I  M  I  L  P  R  Q  L  *  K  H  H  H  Q  H  C  W  Q  G  F  W  *  *  T  R  I  I  L  H  S  *  L  L  I  H  H  C  L  Y  T  F  R  N  L  V  F  L  V  K  K  T  Y  S  F  A  S  S  T  C  G  L  K  R :   L  T  M  L  P  L  S  R  R  R  Q  L  V  W  P  S  L  *  F  *  L  *  G  C  L  K  Y  L  I  N  L  I  R  L  *   : V  Y  V  Q  V  L  *  W  V  E  V  R  I  *  V  K  K  S  L   : V  V  T  M  *  A  L  A  N  L  M  C  Q  A  R  S  *  G  G  D  R :   *  N  S  R  T  Q  *  T  R  F  H  W  R  T  Q  *  E  T  I  F  K  L  V  H  L  F  M  G  N  P  L  M  Q  S  L  V  D  C  T  L  Q  Y  S  I  N  *  N  K  H  *  R  C  H  E  L  N  S  G  R  Q  F  L  M  L  F  S  K  L  V  F  *  V  Q  *  S  H  Q  G  V  R  K  :  V  S  P  R  S  M  L  L  R  R  Y  S  *  S  S  I  F  F  A  P  I  V  W  L  D  C  C  C  P  G  W  V  V  L  P  *  L  C  R  G  R  E  E  V  L  L  L  R  A  F  S  T  *  P  P  N  F  S  P  H  S  F  G  V  R  A  C  V  V  N  S  M  I  L  S  C  R  G  F  *  G  I  K  D  Q  S  L  R  L  *  Y  W  I  V  C  S  H  H  L  L  K  A  G  N  R  D  Q  *  Q  F  K  R  H  L  L  T  I  L  V  I  A  L  V  A  F  *  I  L  F  L  *  R  V  S  N  L  S  H  T  F  K  Y  C  L  K :   V  N  R  K   </first_frame>
            <second_frame>  D  W  G  R  *  S  *  S  F  Q  G  S  C  K  S  I  I  I  S  T  A  G  K  D  F  G  D  E  H  E  L  S  C  T  A  N  F  *  S  I  T  V  Y  T  P  S  E  I  W  F  S  *  *  R  K  H  T  P  L  P  R  R  H  V  A  *  K   : G  *  Q  C  Y  L  F  P  E  E  D  N  W  F  G  P  L  Y  N  S  D  F  E  V  A  S  S  T  *  *  T  *  S  D  Y  E  :  C  M  Y  K  C  Y  N  G  W  K  *  G  F  K  *  R  R  V  *  :  *  *  Q  C  K  L  *  Q  T  S  C  A  K  Q  G  V  E  E  E  T   : D  E  T  L  G  P  N  K  P  D  F  I  G  E  L  S  E  R  Q  S  S  N  L  F  I  S  S  W  G  I  L  *  C  S  H  W  *  I  A  P  F  S  T  Q  S  I  K  T  S  I  E  D  A  M  S  *  I  V  G  V  N  S  *  C  Y  F  L  S  W  S  F  E  F  N  D  L  T  K  A  *  E  R :   S  H  L  E  A  C  C  C  V  V  I  H  E  V  P  F  F  L  P  L  L  F  G  W  I  V  V  V  L  G  G  L  F  C  P  S  C  A  G  G  E  R  R  C  C  Y  *  G  H  S  P  L  S  H  P  I  F  L  P  I  R  S  G  C  E  L  V  L  *  I  A  *  S  S  H  V  V  V  F  K  A  *  R  I  R  A  *  G  C  N  T  G  *  C  A  V  T  I  C  S  K  Q  E  I  G  T  N  D  N  S  N  G  I  Y  *  L  F  *  L  L  R  L  W  L  F  E  F  Y  F  F  D  V  F  Q  I  Y  P  I  L  L  N  I  V  *   : K  L  T  E  K  </second_frame>
            <third_frame>   T  G  G  D  D  H  D  P  S  K  A  A  V  K  A  S  S  S  A  L  L  A  R  I  L  V  M  N  T  N  Y  L  A  Q  L  T  S  D  P  S  L  S  I  H  L  Q  K  S  G  F  P  S  E  E  N  I  L  L  C  L  V  D  M  W  L  E  K  :  V  D  N  V  T  S  F  Q  K  K  T  I  G  L  A  L  S  I  I  L  T  L  R  L  P  Q  V  L  D  K  L  D  Q  I  M  S :   V  C  T  S  V  I  M  G  G  S  E  D  L  S  E  E  E  S  S :   S  D  N  V  S  S  S  K  P  H  V  P  S  K  E  L  R  R  R  Q  :  M  K  L  S  D  P  I  N  Q  I  S  L  E  N  S  V  R  D  N  L  Q  T  C  S  S  L  H  G  E  S  F  N  A  V  I  G  R  L  H  P  S  V  L  N  Q  L  K  Q  A  L  K  M  P  *  V  K  *  W  A  S  I  L  D  V  I  F  *  V  G  L  L  S  S  M  I  S  P  R  R  K  K   : G  L  T  *  K  H  A  A  A  S  L  F  M  K  F  H  F  F  C  P  Y  C  L  A  G  L  L  L  S  W  V  G  C  F  A  L  V  V  Q  G  E  R  G  G  V  A  I  K  G  I  L  H  L  A  T  Q  F  F  S  P  F  V  R  G  A  S  L  C  C  K  *  H  D  P  L  M  S  W  F  L  R  H  K  G  S  E  L  E  V  V  I  L  D  S  V  Q  S  P  F  A  Q  S  R  K  *  G  P  M  T  I  Q  T  A  F  T  N  Y  S  S  Y  C  A  C  G  F  L  N  F  I  S  L  T  C  F  K  F  I  P  Y  F  *  I  L  S  K  :  S  *  Q  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0001L13.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6025" stop="6225"/>
                    <exon start="6908" stop="7014"/>
                    <exon start="7128" stop="7184"/>
                    <exon start="7279" stop="7339"/>
                    <exon start="7424" stop="7585"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>585</number_coding_nucleotides>
                  <number_encoded_amino_acids>195</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TGGDDHDPSKAAVKASSSALLARILVMNTNYLAQLTSDPSLSIHLQKSGFPSEENILLCLVDMWLEKVDNVTSFQKKTIGLALSIILTLRLPQVLDKLDQIMSVCTSVIMGGSEDLSEEESSSDNVSSSKPHVPSKELRRRQMKLSDPINQISLENSVRDNLQTCSSLHGESFNAVIGRLHPSVLNQLKQALKMP*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0001L13.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8519" stop="8719"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KHAAASLFMKFHFFCPYCLAGLLLSWVGCFALVVQGERGGVAIKGILHLATQFFSPFVRGASLCCK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 98 chains have been computed
$ 
$ memory statistics:
$ 122736 bytes spliced alignments in total
$ 6 spliced alignments have been stored
$ 20456 bytes was the average size of a spliced alignment
$ 6000 bytes predicted gene locations in total
$ 1 predicted gene locations have been stored
$ 6000 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 106 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 13:10:20
-->
