<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-14 17:43:51"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09SLe0009I15-gLoy2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C09SLe0009I15-gLoy2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0009I15-gLoy2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E241790" ref_strand="+" ref_description="SGN-E241790 [cLEE-10-M7](-)">
      <seq>tttaggctcgtaccttaaggagcatcatctcacttcaacaatagcatctctttaggaatttggcattaataggaccgatccttaagccatcagcatcaacaagcttgtaagcaccatttgaatatgcttcttgtacaacatatggtccatcccactttgagataaatttgcccccagacttgtgcgaagtaatgatgggtcttcttaccgagagaacttgatctccaacttgaaagcacctcaagcaaaccttcttattaaaagcacaagatagacgagcttgataacattcaaggttttgttgggcttataacctcttttgatcaagtgcttctaactccgcaagaagaaataaagcattttcttcctcagtgaacccttcttaaatagcaagccttaaggagggtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0009I15-gLoy2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0009I15.1" temp_strand="-" temp_description="C09SLe0009I15.1  EU139073.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139073.1| upload_account_name:spain (1 - 94090)">
        <position start="15136" stop="14128"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14836" g_stop="14428" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="409" r_length="409" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0009I15.1" gen_strand="-" ref_id="SGN-E241790" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0009I15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241790" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14836" e_stop="14428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAGGCTCGTACCTTGAGGAGCATCATCTTCCTTCAAAGATAGTATCTCTTTAGAAATTTGGCATTAATAGGACCGATCCTTAAGCCATCAGCATCAACAAGCTTGTAAGCACCATTTGAATATGCTTCTTGTATGACATATGGTCCACCCCACTTTGAGGTAAATTTGGCCCCAGACTTGTGTAAAGTAATGATTGGTATTCTTACCGCGAGAACTTGATCTCCAACTTGAAAGCACCTCAAGCGAACCTTTTTATTAAAAGCACGAGATAGACGAGCTAGATAACATTCAAGGTTTTGTTGGGCTTCTAACCTCTTTTCATCAAGTGCTTCTAACTCAGCAAGAAGCAATCAAGCATTTTCTTCCTAGGTGAGCACTTCTTGAATAGCAAGCCTTAAGGAGGGTAT</genome_strand>
        <mrna_strand>TTTAGGCTCGTACCTTAAGGAGCATCATCTCACTTCAACAATAGCATCTCTTTAGGAATTTGGCATTAATAGGACCGATCCTTAAGCCATCAGCATCAACAAGCTTGTAAGCACCATTTGAATATGCTTCTTGTACAACATATGGTCCATCCCACTTTGAGATAAATTTGCCCCCAGACTTGTGCGAAGTAATGATGGGTCTTCTTACCGAGAGAACTTGATCTCCAACTTGAAAGCACCTCAAGCAAACCTTCTTATTAAAAGCACAAGATAGACGAGCTTGATAACATTCAAGGTTTTGTTGGGCTTATAACCTCTTTTGATCAAGTGCTTCTAACTCCGCAAGAAGAAATAAAGCATTTTCTTCCTCAGTGAACCCTTCTTAAATAGCAAGCCTTAAGGAGGGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0009I15-gLoy2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E351082" ref_strand="+" ref_description="SGN-E351082 [cTOS-6-H17]">
      <seq>aagcatcaaatgaccaagatgcgatggttgggtgcaatacttcgggtggctggtgaatgaaattcacatgaaattgacaagcatcacatttcctggcataatataagcaatctttcaccatggttggccagtaataccccatcctctttatgtggaaatgaagttttggtccagattgatgtgatccacataaagtgtgcttcttgcggggcttgaatcgtttcttcctctcccaaacatcgtaataacataccctcaaatgatcttctatataatgtatccttgtagtaaaggaaacgaggtgcacgacgacgtatgtcagttcttcttcttggattttctggaagtatcccataacataggtagtcaatgatgggttgtctccaatcttccttcgcatcttcaacaatggagacgatatgatcaagcttatttttaatatattcttcctcatttgacggtggtactatctatttttgacagacagttacttgcgtttgattaggaagggttaacgttgaagctagagtagccaatgcatcatctttcttattctctgttcgacgcacatgctgaagggttacatcaccaatccatcttatcaatttttaagcataatcatgataaggtcgcaattcaggcctttttacgtcataacttcctaagagttgattaatcaccaattgagagtcaccaaagacctataaatgtaattgtttcatgttaacggccatttcaagtccaagtatcagtgcttgatattcagcgacattattgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0009I15-gLoy2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0009I15.1" temp_strand="-" temp_description="C09SLe0009I15.1  EU139073.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139073.1| upload_account_name:spain (1 - 94090)">
        <position start="17820" stop="16438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17520" g_stop="16738" g_length="783"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="778" r_length="778" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0009I15.1" gen_strand="-" ref_id="SGN-E351082" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>783</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0009I15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351082" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17520" e_stop="16738"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCGTCAAATGGCCAAGATGCAATGGTTGGGTGCAATACTTCGGGTGGCTGATGAATGAAATTCGCATGAAATAGACAAGCATCGCATTTCCTGGCATAATATAAGCAATCATTCACCATGGTTTACCATTAATACCCCATCCTCTTTATGTGAAAATGAAGTTTTGGTCCAGATTGATGTGATCCACATACTCCTGAACGTGCTTCTTGCAGAGCTTGAGTCGCTTCTTCCTCTACCAAGCATTGTAATAACATACCCTCAAATGATCTTCAATATAATGTATCCTTGTAGTAAAGGAAACCAGGTGCACGACGCGTTATGTCAGTCCTTCTTCTTGGATTTTCTGGAAGTGTCCCATAACATAGGTAGTCAATGATGGGTTGTCTCCAATCTTCCTTCGCAGCTTCAACAATGGCGACGATATGATCAAGCTTATTTTCAATATATTCTTCCTCATTTGATGGTGGTACTATCCATTTTTTACAGATAATTACTTGCGTCTGATCAGGAAGGGTTAGCGTTGAAGCTAGAGTAGCCAATGCATCATCTTTCTTATTCTCTGTTCGACGCACATGTTGAAGGGTTACATCCCCAGGCCATCTTATCAACTTTTGAGCATAATCATGATAAGGTCGCAATTCAGGATTTTTTACCTCATAACTTCCTAAGAGTTGATTAATAACCAATTGAGAGTCACCAAAGACCTGTAAATGTAATTGTTTCATGTCAACGGCCATTTCAAGTCCATGTATCAGTGCTTGATATTCAGCGACATTATTGG</genome_strand>
        <mrna_strand>AAGCATCAAATGACCAAGATGCGATGGTTGGGTGCAATACTTCGGGTGGCTGGTGAATGAAATTCACATGAAATTGACAAGCATCACATTTCCTGGCATAATATAAGCAATCTTTCACCATGGTTGGCCAGTAATACCCCATCCTCTTTATGTGGAAATGAAGTTTTGGTCCAGATTGATGTGATCCACATA-----AAGTGTGCTTCTTGCGGGGCTTGAATCGTTTCTTCCTCTCCCAAACATCGTAATAACATACCCTCAAATGATCTTCTATATAATGTATCCTTGTAGTAAAGGAAACGAGGTGCACGACGACGTATGTCAGTTCTTCTTCTTGGATTTTCTGGAAGTATCCCATAACATAGGTAGTCAATGATGGGTTGTCTCCAATCTTCCTTCGCATCTTCAACAATGGAGACGATATGATCAAGCTTATTTTTAATATATTCTTCCTCATTTGACGGTGGTACTATCTATTTTTGACAGACAGTTACTTGCGTTTGATTAGGAAGGGTTAACGTTGAAGCTAGAGTAGCCAATGCATCATCTTTCTTATTCTCTGTTCGACGCACATGCTGAAGGGTTACATCACCAATCCATCTTATCAATTTTTAAGCATAATCATGATAAGGTCGCAATTCAGGCCTTTTTACGTCATAACTTCCTAAGAGTTGATTAATCACCAATTGAGAGTCACCAAAGACCTATAAATGTAATTGTTTCATGTTAACGGCCATTTCAAGTCCAAGTATCAGTGCTTGATATTCAGCGACATTATTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0009I15-gLoy2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E211563" ref_strand="+" ref_description="SGN-E211563 [cLEC-67-I7]">
      <seq>ataactcacatccattgagtactccaatggtggtaagatcgcttgacatcaatacagatccatttcgacctcaagagaatgatgaagagcttcttggtgatgaaactccttatcttagtgcgatcggggcactaatgtaccttgctaacaatactcgaccagatatctgttttgcagtaagtctactggcaagattcagttcctccccaacaaaaagacattggaatggtgttaaacacatacttcgatatcttcgagggaccatggacatgggtttattctattccaatgaatccaaatcagaactgattggttacgcagatgcagggtatttatcagatccgcataaagcccgatcacaaacaggctatttgtttacatgtggagacacggcaatatcttggcgatcaatgaagcaaacgttggtagccacttcttcaaatcatgcagaaataatagccatccatgaagcaagtcgagagtgcgtctggttgagatcaatgacccatcatattcaggaaatgtgtggtttttctttgaaaaagaatataccaaccataatgtacgaagataatgctgcatgtatagctcaattgaaaggaggatacatcaaaggagaccggacaaagcatatctcaccaaagttctttttcacgcatgatcttcaacaaaatgggtgagatagaagtncaacaaattcgttcaagtgataatcttgctgatttattcacaaaggcattgccaacatcancgtttgagaagttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0009I15-gLoy2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0009I15.1" temp_strand="-" temp_description="C09SLe0009I15.1  EU139073.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139073.1| upload_account_name:spain (1 - 94090)">
        <position start="28416" stop="27054"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28116" g_stop="27354" g_length="763"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="765" r_length="765" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0009I15.1" gen_strand="-" ref_id="SGN-E211563" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>763</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0009I15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211563" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28116" e_stop="27354"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAACTCACATCCATTGAGTACTCCAATGGTGGTAAGATCATTTGACATCAATACAGATCCATTTCGACCTTAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAAGAATACTCGACGAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGA-TCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATTGGTTTATTCTATTCCAATGAATTCAAGTCAGAACTGATTGGTTATGCAGATGCAGGGTATTTATCTGATCCGCATAAAGCTCGATCACAAACAGGCTATTTGTTTACATGTGGAGACGCGGCGATATCTTAGCGATCAATGAAGCTAACGTTGGTAACCACTTCTTCAAATCATGCAGAAATAATAGCCATCCATGAAGCAAGTCGAGAGTGCGTCTGGTTGAGATCAATGACCCATCATATTCAAAAAATGTGTGGTTTTTCTTTGAAAAAGAATATGCCAACCACAATGTACGAAGATAATGCTGCATGTATAGCTCAATTGAAAGGAGGATACATCAAAGGAGACCGGACAAAGCATATCTCACCAAAGTTCTTTTTCACGCATGATCTTCAACAAAAT-GGTGAGATAGAAGTTCAACAAATTCGTTCAAGTGATAATCTTGCTGATTTATTCACTAAGGCATTGCCAACATCAACGTTTGAGAAGTTG</genome_strand>
        <mrna_strand>ATAACTCACATCCATTGAGTACTCCAATGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGATCCGCATAAAGCCCGATCACAAACAGGCTATTTGTTTACATGTGGAGACACGGCAATATCTTGGCGATCAATGAAGCAAACGTTGGTAGCCACTTCTTCAAATCATGCAGAAATAATAGCCATCCATGAAGCAAGTCGAGAGTGCGTCTGGTTGAGATCAATGACCCATCATATTCAGGAAATGTGTGGTTTTTCTTTGAAAAAGAATATACCAACCATAATGTACGAAGATAATGCTGCATGTATAGCTCAATTGAAAGGAGGATACATCAAAGGAGACCGGACAAAGCATATCTCACCAAAGTTCTTTTTCACGCATGATCTTCAACAAAATGGGTGAGATAGAAGTNCAACAAATTCGTTCAAGTGATAATCTTGCTGATTTATTCACAAAGGCATTGCCAACATCANCGTTTGAGAAGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0009I15-gLoy2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E200850" ref_strand="+" ref_description="SGN-E200850 [cLEC-5-I1]">
      <seq>tttatcagatccgcataaagcccgatcacaaacaggctatttgtttacatgtggagacacggcaatatcttggcgatcaatgaagcaaacgttggtagccacttcttcaaatcatgcagaaataatagccatccatgaagcaagtcgagagtgcgtctggttgagatcaatgacccatcatattcaggaaatgtgtggtttttctttgaaaaagaatataccaaccacaatgcacgaagataatgctgcatgtatagctcaattgaaaggaggatacatcaaaggagaccggacaaagcatatctcaccaaagttctttttcacgcatgatctttaacaaaatggtgagatagaagttcaacaaattcgttcaagtgataatcttgctgatttattcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0009I15-gLoy2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0009I15.1" temp_strand="-" temp_description="C09SLe0009I15.1  EU139073.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139073.1| upload_account_name:spain (1 - 94090)">
        <position start="28086" stop="27088"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27786" g_stop="27388" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="399" r_length="399" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0009I15.1" gen_strand="-" ref_id="SGN-E200850" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>399</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0009I15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200850" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27786" e_stop="27388"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATCTGATCCGCATAAAGCTCGATCACAAACAGGCTATTTGTTTACATGTGGAGACGCGGCGATATCTTAGCGATCAATGAAGCTAACGTTGGTAACCACTTCTTCAAATCATGCAGAAATAATAGCCATCCATGAAGCAAGTCGAGAGTGCGTCTGGTTGAGATCAATGACCCATCATATTCAAAAAATGTGTGGTTTTTCTTTGAAAAAGAATATGCCAACCACAATGTACGAAGATAATGCTGCATGTATAGCTCAATTGAAAGGAGGATACATCAAAGGAGACCGGACAAAGCATATCTCACCAAAGTTCTTTTTCACGCATGATCTTCAACAAAATGGTGAGATAGAAGTTCAACAAATTCGTTCAAGTGATAATCTTGCTGATTTATTCAC</genome_strand>
        <mrna_strand>TTTATCAGATCCGCATAAAGCCCGATCACAAACAGGCTATTTGTTTACATGTGGAGACACGGCAATATCTTGGCGATCAATGAAGCAAACGTTGGTAGCCACTTCTTCAAATCATGCAGAAATAATAGCCATCCATGAAGCAAGTCGAGAGTGCGTCTGGTTGAGATCAATGACCCATCATATTCAGGAAATGTGTGGTTTTTCTTTGAAAAAGAATATACCAACCACAATGCACGAAGATAATGCTGCATGTATAGCTCAATTGAAAGGAGGATACATCAAAGGAGACCGGACAAAGCATATCTCACCAAAGTTCTTTTTCACGCATGATCTTTAACAAAATGGTGAGATAGAAGTTCAACAAATTCGTTCAAGTGATAATCTTGCTGATTTATTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0009I15-gLoy2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E201786" ref_strand="+" ref_description="SGN-E201786 [cLEC-11-H5]">
      <seq>tggtggtaagatcgcttgacatcaatacagatccatttcgacctcaagagaatgatgaagagcttcttggtgatgaaactccttatcttagtgcgatcggggcactaatgtaccttgctaacaatactcgaccagatatctgttttgcagtaagtctactggcaagattcagttcctccccaacaaaaagacattggaatggtgttaaacacatacttcgatatcttcgagggaccatggacatgggtttattctattccaatgaatccaaatcagaactgattggttacgcagatgcagggtatttatcagatccgcataaagcccgatcacaaacaggctatttgtttacatgtggagacacggcaatatcttggcgatcaatgaagcaaacgttggtagccacttcttcaaatcatgcagaaataatagccatccatgaagcaagtcgagagtgcgtctggttgagatcaatgacccatcatattcaggaaatgtgtggtttttctttgaaaaagaatataccacccttattgtccgaagataatgctgcatgtatagctcaattgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0009I15-gLoy2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0009I15.1" temp_strand="-" temp_description="C09SLe0009I15.1  EU139073.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139073.1| upload_account_name:spain (1 - 94090)">
        <position start="28389" stop="27220"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28089" g_stop="27520" g_length="570"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="571" r_length="571" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0009I15.1" gen_strand="-" ref_id="SGN-E201786" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0009I15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201786" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28089" e_stop="27520"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGGTAAGATCATTTGACATCAATACAGATCCATTTCGACCTTAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAAGAATACTCGACGAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGA-TCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATTGGTTTATTCTATTCCAATGAATTCAAGTCAGAACTGATTGGTTATGCAGATGCAGGGTATTTATCTGATCCGCATAAAGCTCGATCACAAACAGGCTATTTGTTTACATGTGGAGACGCGGCGATATCTTAGCGATCAATGAAGCTAACGTTGGTAACCACTTCTTCAAATCATGCAGAAATAATAGCCATCCATGAAGCAAGTCGAGAGTGCGTCTGGTTGAGATCAATGACCCATCATATTCAAAAAATGTGTGGTTTTTCTTTGAAAAAGAATATGCCAACCACAATGTACGAAGATAATGCTGCATGTATAGCTCAATTGAA</genome_strand>
        <mrna_strand>TGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGATCCGCATAAAGCCCGATCACAAACAGGCTATTTGTTTACATGTGGAGACACGGCAATATCTTGGCGATCAATGAAGCAAACGTTGGTAGCCACTTCTTCAAATCATGCAGAAATAATAGCCATCCATGAAGCAAGTCGAGAGTGCGTCTGGTTGAGATCAATGACCCATCATATTCAGGAAATGTGTGGTTTTTCTTTGAAAAAGAATATACCACCCTTATTGTCCGAAGATAATGCTGCATGTATAGCTCAATTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0009I15-gLoy2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E209835" ref_strand="+" ref_description="SGN-E209835 [cLEC-52-G1]">
      <seq>atttgtaataatagctgtgtatgttgatgatttgaacatcattggcactggtaaagagcttttagaagctattgagtgtctgaaaaaagaatttgaaatgaaagatctcggcaagacaaaattttgtcttggcctacagattgagaatttgtcaaatggaatacttgttcatcaatcaacgtacacagaaaagatactaaagcgtttttacatggataactcacatccattgagtactccaatggtggtaagatcgcttgacatcaatacagatccatttcgacctcaagagaatgatgaagagcttcttggtgatgaaactccttatcttagtgcgatcggggcactaatgtaccttgctaacaatactcgaccagatatctgttttgcagtaagtctactggcaagattcagttcctccccaacaaaaagacattggaatggtgttaaacacatacttcgatatcttcgagggaccatggacatgggtttattctattccaatgaatccaaatcagaactgattggttacgcagatgcagggtatttatcagatccgcataaagcccgatcacaaacaggctatttgtttacatgtggagacacggcaatatcttggcgatcaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0009I15-gLoy2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0009I15.1" temp_strand="-" temp_description="C09SLe0009I15.1  EU139073.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139073.1| upload_account_name:spain (1 - 94090)">
        <position start="28631" stop="27405"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28331" g_stop="27705" g_length="627"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="628" r_length="628" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0009I15.1" gen_strand="-" ref_id="SGN-E209835" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0009I15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209835" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28331" e_stop="27705"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGTAATAATAGTTGTGTATGTTGATGATTAGAACATCATTGGCACTCGTAAAGAGATTTTAGAAGCTATTGAGTGTCTTAAAAAAGAATTTGAAATGAATGATCTTGCCAAGACAAAATTTTGTCTTGGCCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAGGCGTTTTTACATGGATAACTCACATCCATTGAGTACTCCAATGGTGGTAAGATCATTTGACATCAATACAGATCCATTTCGACCTTAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAAGAATACTCGACGAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGA-TCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATTGGTTTATTCTATTCCAATGAATTCAAGTCAGAACTGATTGGTTATGCAGATGCAGGGTATTTATCTGATCCGCATAAAGCTCGATCACAAACAGGCTATTTGTTTACATGTGGAGACGCGGCGATATCTTAGCGATCAATG</genome_strand>
        <mrna_strand>ATTTGTAATAATAGCTGTGTATGTTGATGATTTGAACATCATTGGCACTGGTAAAGAGCTTTTAGAAGCTATTGAGTGTCTGAAAAAAGAATTTGAAATGAAAGATCTCGGCAAGACAAAATTTTGTCTTGGCCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACTCCAATGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGATCCGCATAAAGCCCGATCACAAACAGGCTATTTGTTTACATGTGGAGACACGGCAATATCTTGGCGATCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0009I15-gLoy2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E299938" ref_strand="+" ref_description="SGN-E299938 [cLEW-11-G21]">
      <seq>ctcgtgcccgtttagaagctattgagtgtctgaaaaaagaatttgaaatgaaagatctcggcaagacaaaattttgtcttggcctacagattgagaatttgtcaaatggaatacttgttcatcaatcaacgtacacagaaaagatactaaagcgtttttacatggataactcacatccattgagtaccccaatggtggtaagatcgcttgacatcaatacagatccatttcgacctcaagagaatgatgaagagcttcttggtgatgaaactccttatcttagtgcgatcggggcactaatgtaccttgctaaccacactcgaccagatatctgttttgcagtaagtctactggcaagattcagttcctccccaacaaaaagacattggaatggtgttaaacacatacttcgatatcttcgagggaccatggacatgggtttattctattccaatgaatccaaatcagaactgattggttacgcagatgcagggtatttatcagatcccgcataaagcccgatcacaaacaggctatttgtttacatgtggaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0009I15-gLoy2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0009I15.1" temp_strand="-" temp_description="C09SLe0009I15.1  EU139073.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139073.1| upload_account_name:spain (1 - 94090)">
        <position start="28571" stop="27430"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28281" g_stop="27730" g_length="552"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0009I15.1" gen_strand="-" ref_id="SGN-E299938" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0009I15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299938" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28281" e_stop="27730"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAAGAGATTTTAGAAGCTATTGAGTGTCTTAAAAAAGAATTTGAAATGAATGATCTTGCCAAGACAAAATTTTGTCTTGGCCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAGGCGTTTTTACATGGATAACTCACATCCATTGAGTACTCCAATGGTGGTAAGATCATTTGACATCAATACAGATCCATTTCGACCTTAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAAGAATACTCGACGAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGA-TCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATTGGTTTATTCTATTCCAATGAATTCAAGTCAGAACTGATTGGTTATGCAGATGCAGGGTATTTATCTGAT-CCGCATAAAGCTCGATCACAAACAGGCTATTTGTTTACATGTGGAGA</genome_strand>
        <mrna_strand>CTCGTGCCCGTTTAGAAGCTATTGAGTGTCTGAAAAAAGAATTTGAAATGAAAGATCTCGGCAAGACAAAATTTTGTCTTGGCCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACCCCAATGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACCACACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGATCCCGCATAAAGCCCGATCACAAACAGGCTATTTGTTTACATGTGGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0009I15-gLoy2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E205887" ref_strand="+" ref_description="SGN-E205887 [cLEC-20-D8]">
      <seq>cgatttgtccctgcatttttattaaacggtcggggtctgaatttgtaataatagctgtgtatgttgatgatttgaacatcattggcactggtaaagagcttttagaagctattgagtgtctgaaaaaagaatttgaaatgaaagatctcggcaagacaaaattttgtcttggcctacagattgagaatttgtcaaatggaatacttgttcatcaatcaacgtacacagaaaagatactaaagcgtttttacatggataactcacatccattgagtacgccaatggtggtaagatcgcttgacatcaatacagatccatttcgacctcaagagaatgatgaagagcttcttggtgatgaaactccttatcttagtgcgatcggggcactaatgtaccttgctaacaacactcgaccagatatctgttttgcagtaagtctactggcaagattcagttcctccccaacaaaaagacattggaatggtgttaaacacatacttcgatatcttcgagggaccatggacatgggtttattctattccaatgaatccaaatcagaactgattggttacgcagatgcagggtatttatcagatccgcataaagcccgatcacaaacaggctatttgtttacatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0009I15-gLoy2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0009I15.1" temp_strand="-" temp_description="C09SLe0009I15.1  EU139073.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139073.1| upload_account_name:spain (1 - 94090)">
        <position start="28671" stop="27435"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28371" g_stop="27735" g_length="637"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="638" r_length="638" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0009I15.1" gen_strand="-" ref_id="SGN-E205887" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0009I15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205887" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28371" e_stop="27735"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATTTGTCCCTGCATTTTCATTAAACGGTCGGGGTTTGAATTTGTAATAATAGTTGTGTATGTTGATGATTAGAACATCATTGGCACTCGTAAAGAGATTTTAGAAGCTATTGAGTGTCTTAAAAAAGAATTTGAAATGAATGATCTTGCCAAGACAAAATTTTGTCTTGGCCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAGGCGTTTTTACATGGATAACTCACATCCATTGAGTACTCCAATGGTGGTAAGATCATTTGACATCAATACAGATCCATTTCGACCTTAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAAGAATACTCGACGAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGA-TCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATTGGTTTATTCTATTCCAATGAATTCAAGTCAGAACTGATTGGTTATGCAGATGCAGGGTATTTATCTGATCCGCATAAAGCTCGATCACAAACAGGCTATTTGTTTACATGT</genome_strand>
        <mrna_strand>CGATTTGTCCCTGCATTTTTATTAAACGGTCGGGGTCTGAATTTGTAATAATAGCTGTGTATGTTGATGATTTGAACATCATTGGCACTGGTAAAGAGCTTTTAGAAGCTATTGAGTGTCTGAAAAAAGAATTTGAAATGAAAGATCTCGGCAAGACAAAATTTTGTCTTGGCCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACGCCAATGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAACACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGATCCGCATAAAGCCCGATCACAAACAGGCTATTTGTTTACATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0009I15-gLoy2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E209830" ref_strand="+" ref_description="SGN-E209830 [cLEC-52-E1]">
      <seq>atttgtaataatagctgtgtatgttgatgatttgaacatcattggcactggtaaagagcttttagaagctattgagtgtctgaaaaaagaatttgaaatgaaagatctcggcaagacaaaattttgtcttggcctacagattgagaatttgtcaaatggaatacttgttcatcaatcaacgtacacagaaaagatactaaagcgtttttacatggataactcacatccattgagtactccaatggtggtaagatcgcttgacatcaatacagatccatttcgacctcaagagaatgatgaagagcttcttggtgatgaaactccttatcttagtgcgatcggggcactaatgtaccttgctaacaatactcgaccagatatctgttttgcagtaagtctactggcaagattcagttcctccccaacaaaaagacattggaatggtgttaaacacatacttcgatatcttcgagggaccatggacatgggtttattctattccaatgaatgcaaatcagaactgattggttacgcagatgcaaggtatttatcagatccgcataaagcccgatcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0009I15-gLoy2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0009I15.1" temp_strand="-" temp_description="C09SLe0009I15.1  EU139073.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139073.1| upload_account_name:spain (1 - 94090)">
        <position start="28631" stop="27457"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28331" g_stop="27757" g_length="575"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="576" r_length="576" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0009I15.1" gen_strand="-" ref_id="SGN-E209830" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0009I15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209830" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28331" e_stop="27757"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGTAATAATAGTTGTGTATGTTGATGATTAGAACATCATTGGCACTCGTAAAGAGATTTTAGAAGCTATTGAGTGTCTTAAAAAAGAATTTGAAATGAATGATCTTGCCAAGACAAAATTTTGTCTTGGCCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAGGCGTTTTTACATGGATAACTCACATCCATTGAGTACTCCAATGGTGGTAAGATCATTTGACATCAATACAGATCCATTTCGACCTTAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAAGAATACTCGACGAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGA-TCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATTGGTTTATTCTATTCCAATGAATTCAAGTCAGAACTGATTGGTTATGCAGATGCAGGGTATTTATCTGATCCGCATAAAGCTCGATCACA</genome_strand>
        <mrna_strand>ATTTGTAATAATAGCTGTGTATGTTGATGATTTGAACATCATTGGCACTGGTAAAGAGCTTTTAGAAGCTATTGAGTGTCTGAAAAAAGAATTTGAAATGAAAGATCTCGGCAAGACAAAATTTTGTCTTGGCCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACTCCAATGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATGCAAATCAGAACTGATTGGTTACGCAGATGCAAGGTATTTATCAGATCCGCATAAAGCCCGATCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0009I15-gLoy2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E331947" ref_strand="+" ref_description="SGN-E331947 [cTOD-16-G12]">
      <seq>aaataatgcaacaatatgaagattttgagccaaaatctgttcacgaatgtagacagagaaatgattggccaaaatggaaggatgcaattcaagctgaattggcttcactagaaatacgtgaagtttttggaccgataatccgaacacctgaaggtatcaagccagtggggtacaaatgggtttttgtacggaaaagaaatgagaaagatgaagtcatgagatataaggcccgactcgttgctcaaggtttttctcaaagacctggcattgattatatggagacatattctccagtggtagatgcaatcaccttcagatatctcataaatttggcagttcatgaaaaacttgaaatgcgtctaatggacgttgtcacagcctatctatatggctcattggaccacaacattttcatgaaaattcctgaagcattcaaagttcctgaagcatacaaagattcaagagaaacttgttcaataaaacttcagaaatctctgtatggattgaaacaatcaggaaggatgtggtacaatcgtctgagtgaatatttgttaaagaaagggtacaaaaatgacccgatttgtccctgcatttttattaaacggtcggggtctgaatttgtaataatagctgtgtatgttgatgatttgaacatcattggcactggtaaagagcttttagaagctattgagtgtctgaaaaaagaatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0009I15-gLoy2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0009I15.1" temp_strand="-" temp_description="C09SLe0009I15.1  EU139073.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139073.1| upload_account_name:spain (1 - 94090)">
        <position start="29247" stop="27937"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28947" g_stop="28237" g_length="711"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="711" r_length="711" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0009I15.1" gen_strand="-" ref_id="SGN-E331947" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0009I15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331947" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28947" e_stop="28237"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATAATGCAACAAGGTGAAGATTTTGAGCCAAAATCTGTTCACGAATGTAGACAGAGAAATGATTGGCCAAAATGGAAGGATGCAATTCAAGCTGAATTGGCTTCACTAGAAAAACATGAAGTTTTTGGACCGATAATCCGAACACCTGAAGGTATCAAGCCAGTAGGGTACAAATGGGTTTTTGTACGAAAAAGAAATGAGAAAGGTGAAGTCATGAGATATAAGGCCCGACTCGTTACTCAATGTTTTTCTCAAAGACCTGACATTGATTATATGGAGACATATTCTCCAGTGGTAGATGCAATCACCTTCAAATATTTCATAAATCTGACAGTTCATGAAAAACTTGAAATGCGTCTATTGGACGTTGTCACAACCTATCTATATGGCTCATTGGACCACAACATTTTCATGAAAATTCCAAAATCATTCCAAGTGCCTGAAGTATACAAAGATTCAAGAGAAACTTGTTCAATAAAGCTTCAGAAATCTCTGTATGGATTGAAACAATCAGGAAGGATGTGGTACAATCGTCTGAGTGAATATTTGTTAAAGAAAGGGTACAAAAATGACCCGATTTGTCCCTGCATTTTCATTAAACGGTCGGGGTTTGAATTTGTAATAATAGTTGTGTATGTTGATGATTAGAACATCATTGGCACTCGTAAAGAGATTTTAGAAGCTATTGAGTGTCTTAAAAAAGAATTTG</genome_strand>
        <mrna_strand>AAATAATGCAACAATATGAAGATTTTGAGCCAAAATCTGTTCACGAATGTAGACAGAGAAATGATTGGCCAAAATGGAAGGATGCAATTCAAGCTGAATTGGCTTCACTAGAAATACGTGAAGTTTTTGGACCGATAATCCGAACACCTGAAGGTATCAAGCCAGTGGGGTACAAATGGGTTTTTGTACGGAAAAGAAATGAGAAAGATGAAGTCATGAGATATAAGGCCCGACTCGTTGCTCAAGGTTTTTCTCAAAGACCTGGCATTGATTATATGGAGACATATTCTCCAGTGGTAGATGCAATCACCTTCAGATATCTCATAAATTTGGCAGTTCATGAAAAACTTGAAATGCGTCTAATGGACGTTGTCACAGCCTATCTATATGGCTCATTGGACCACAACATTTTCATGAAAATTCCTGAAGCATTCAAAGTTCCTGAAGCATACAAAGATTCAAGAGAAACTTGTTCAATAAAACTTCAGAAATCTCTGTATGGATTGAAACAATCAGGAAGGATGTGGTACAATCGTCTGAGTGAATATTTGTTAAAGAAAGGGTACAAAAATGACCCGATTTGTCCCTGCATTTTTATTAAACGGTCGGGGTCTGAATTTGTAATAATAGCTGTGTATGTTGATGATTTGAACATCATTGGCACTGGTAAAGAGCTTTTAGAAGCTATTGAGTGTCTGAAAAAAGAATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0009I15-gLoy2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E332350" ref_strand="+" ref_description="SGN-E332350 [cTOD-17-L10]">
      <seq>ttttctaatttggttatgaaaatggcatatgtcaacacaaaattaattgagggctctggaagagcgaccttattactacctggagggacaatattaagcattgataatgcattatattgtagtaagtctcaaagaaacttattaagtttcaaagttattcgccaaaatggctatcatgttgagacggctaatgaaggaaaggttgaatacctttacattactacaattaatgttgagaagaaaattgtgcatgaaaaattacctgcattttcttctgggttgtactatacaagtataagtacagttgaatcacatgccgtagtaaacaaaaggtttactaattttaatgattttatcatttggcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0009I15-gLoy2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0009I15.1" temp_strand="-" temp_description="C09SLe0009I15.1  EU139073.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139073.1| upload_account_name:spain (1 - 94090)">
        <position start="31012" stop="30032"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30700" g_stop="30332" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="367" r_length="367" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0009I15.1" gen_strand="-" ref_id="SGN-E332350" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>369</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0009I15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332350" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30700" e_stop="30332"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTATGAATATGGCATATGTCAACACAATATCAGGTAGTACAAAATTAATTGAGGGCTCTGGAAGAGCGACCTTATTACTACTTGGAGGGACAATATTAAGCATTGATAATGCATTATATTGTAGTAAGTCTCAAAGAAACTTATTAAG-TTCAAAGTTATTCGTCAAAATGGCTATCATGTTGAGACGGCTAATGAAGGAAAGGTTGAATATCTTTACATTACTACAATTAATGTAAAGAAGAAAATTGTGCATGAAAAATTACCTGCATTTTCTTCTGGGTTGTACTATACAAGTATAAGTACAGTTGAATCACATGCCGTAGTAAATAAAAGGTTAATTAATTTTAATGATTTTATCATTTGGCATG</genome_strand>
        <mrna_strand>TTTTCTAATTTGG-TTATGAAAATGGCATAT--GTCAACACAAAATTAATTGAGGGCTCTGGAAGAGCGACCTTATTACTACCTGGAGGGACAATATTAAGCATTGATAATGCATTATATTGTAGTAAGTCTCAAAGAAACTTATTAAGTTTCAAAGTTATTCGCCAAAATGGCTATCATGTTGAGACGGCTAATGAAGGAAAGGTTGAATACCTTTACATTACTACAATTAATGTTGAGAAGAAAATTGTGCATGAAAAATTACCTGCATTTTCTTCTGGGTTGTACTATACAAGTATAAGTACAGTTGAATCACATGCCGTAGTAAACAAAAGGTTTACTAATTTTAATGATTTTATCATTTGGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0009I15-gLoy2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E298763" ref_strand="+" ref_description="SGN-E298763 [cLET-44-E9]">
      <seq>gaattacaaaagagagaaaagaagagtgagacatcacagaggaaaataatctctaaggaaaaatagagagtgtgagcgatattgtagtgagatggaaaaatcaaaagagtgttatttcttttgaatgtgtagtgatctttagagttttactcaaacatacaagtgtaaaatccttactatagtgatattcgttgcttctcttgggtcgtggtttttctcttatttaggagggtttccacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0009I15-gLoy2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0009I15.1" temp_strand="-" temp_description="C09SLe0009I15.1  EU139073.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139073.1| upload_account_name:spain (1 - 94090)">
        <position start="45535" stop="44696"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45235" g_stop="44996" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0009I15.1" gen_strand="-" ref_id="SGN-E298763" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>240</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0009I15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298763" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45235" e_stop="44996"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTACAAAGGACAG-AAAGAAGAGGGAGGCATCACAGAGGAAAATAATCTGTGAGGAAAAAATAGAGAGTGTGAGCGATATTGTAGTGAGGTGGAAAAATCAAAAGAGTGTTATTTCTTTTGAATGTGTAGTGGTCTTTGGAGTTTTACTCAGACATACAAGTGTAAAATCCTTACTATAGTGATATTCGTTGCTCCTCTCGGGTCGTAGTTTTTCCCTTATTTAGGAGGGTTTCCACG</genome_strand>
        <mrna_strand>GAATTACAAAAGAGAGAAAAGAAGAGTGAGACATCACAGAGGAAAATAATCTCTAAGGAAA-AATAGAGAGTGTGAGCGATATTGTAGTGAGATGGAAAAATCAAAAGAGTGTTATTTCTTTTGAATGTGTAGTGATCTTTAGAGTTTTACTCAAACATACAAGTGTAAAATCCTTACTATAGTGATATTCGTTGCTTCTCTTGGGTCGTGGTTTTTCTCTTATTTAGGAGGGTTTCCACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0009I15-gLoy2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E372869" ref_strand="+" ref_description="SGN-E372869 [TUS-32-N20](-)">
      <seq>agaattacaaaagagagaaaagaagagtgagacatcacagaggaaaataatctttaaggaaaaatagagagtgtgagcgatattgtagtgagatggaaaaatcaaaagagtgttatttcttttgaatgtgtagtgatctttagagttttactcaaacatacaagtgtaaaatccttactatagtgatattcgttgcttctcttgggtcgtggtttttctcttatttaggagggtttccacgtaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0009I15-gLoy2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0009I15.1" temp_strand="-" temp_description="C09SLe0009I15.1  EU139073.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139073.1| upload_account_name:spain (1 - 94090)">
        <position start="45536" stop="44691"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45236" g_stop="44997" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="243" polyA_stop="263"/>
      <MATCH_line gen_id="C09SLe0009I15.1" gen_strand="-" ref_id="SGN-E372869" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>240</cumulative_length_of_scored_exons>
        <coverage percentage="0.913" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0009I15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372869" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45236" e_stop="44997"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATTACAAAGGACAG-AAAGAAGAGGGAGGCATCACAGAGGAAAATAATCTGTGAGGAAAAAATAGAGAGTGTGAGCGATATTGTAGTGAGGTGGAAAAATCAAAAGAGTGTTATTTCTTTTGAATGTGTAGTGGTCTTTGGAGTTTTACTCAGACATACAAGTGTAAAATCCTTACTATAGTGATATTCGTTGCTCCTCTCGGGTCGTAGTTTTTCCCTTATTTAGGAGGGTTTCCAC</genome_strand>
        <mrna_strand>AGAATTACAAAAGAGAGAAAAGAAGAGTGAGACATCACAGAGGAAAATAATCTTTAAGGAA-AAATAGAGAGTGTGAGCGATATTGTAGTGAGATGGAAAAATCAAAAGAGTGTTATTTCTTTTGAATGTGTAGTGATCTTTAGAGTTTTACTCAAACATACAAGTGTAAAATCCTTACTATAGTGATATTCGTTGCTTCTCTTGGGTCGTGGTTTTTCTCTTATTTAGGAGGGTTTCCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0009I15-gLoy2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E372870" ref_strand="+" ref_description="SGN-E372870 [TUS-32-N20]">
      <seq>gaattacaaaagagagaaaagaagagtgagacatcacagaggaaaataatctctaaggaaaaatagagagtgtgagcgatattgtagtgagatggaaaaatcaaaagagtgttatttcttttgaatgtgtagtgatctttagagttttactcaaacatacaagtgtaaaatccttactatagtgatattcgttgcttctcttgggtcgtggtttttctcttatttaggagggtttccacgtaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0009I15-gLoy2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0009I15.1" temp_strand="-" temp_description="C09SLe0009I15.1  EU139073.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139073.1| upload_account_name:spain (1 - 94090)">
        <position start="45535" stop="44691"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45235" g_stop="44997" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="242" polyA_stop="263"/>
      <MATCH_line gen_id="C09SLe0009I15.1" gen_strand="-" ref_id="SGN-E372870" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>239</cumulative_length_of_scored_exons>
        <coverage percentage="0.909" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0009I15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372870" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45235" e_stop="44997"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTACAAAGGACAG-AAAGAAGAGGGAGGCATCACAGAGGAAAATAATCTGTGAGGAAAAAATAGAGAGTGTGAGCGATATTGTAGTGAGGTGGAAAAATCAAAAGAGTGTTATTTCTTTTGAATGTGTAGTGGTCTTTGGAGTTTTACTCAGACATACAAGTGTAAAATCCTTACTATAGTGATATTCGTTGCTCCTCTCGGGTCGTAGTTTTTCCCTTATTTAGGAGGGTTTCCAC</genome_strand>
        <mrna_strand>GAATTACAAAAGAGAGAAAAGAAGAGTGAGACATCACAGAGGAAAATAATCTCTAAGGAAA-AATAGAGAGTGTGAGCGATATTGTAGTGAGATGGAAAAATCAAAAGAGTGTTATTTCTTTTGAATGTGTAGTGATCTTTAGAGTTTTACTCAAACATACAAGTGTAAAATCCTTACTATAGTGATATTCGTTGCTTCTCTTGGGTCGTGGTTTTTCTCTTATTTAGGAGGGTTTCCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0009I15-gLoy2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E378778" ref_strand="+" ref_description="SGN-E378778 [TUS-32-N20]">
      <seq>gaattacaaaagagagaaaagaagagtgagacatcacagaggaaaataatctctaaggaaaaatagagagtgtgagcgatattgtagtgagatggaaaaatcaaaagagtgttatttcttttgaatgtgtagtgatctttagagttttactcaaacatacaagtgtaaaatccttactatagtgatattcgttgcttctcttgggtcgtggtttttctcttatttaggagggtttccacgtaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0009I15-gLoy2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0009I15.1" temp_strand="-" temp_description="C09SLe0009I15.1  EU139073.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139073.1| upload_account_name:spain (1 - 94090)">
        <position start="45535" stop="44691"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45235" g_stop="44997" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="242" polyA_stop="263"/>
      <MATCH_line gen_id="C09SLe0009I15.1" gen_strand="-" ref_id="SGN-E378778" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>239</cumulative_length_of_scored_exons>
        <coverage percentage="0.909" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0009I15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E378778" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45235" e_stop="44997"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTACAAAGGACAG-AAAGAAGAGGGAGGCATCACAGAGGAAAATAATCTGTGAGGAAAAAATAGAGAGTGTGAGCGATATTGTAGTGAGGTGGAAAAATCAAAAGAGTGTTATTTCTTTTGAATGTGTAGTGGTCTTTGGAGTTTTACTCAGACATACAAGTGTAAAATCCTTACTATAGTGATATTCGTTGCTCCTCTCGGGTCGTAGTTTTTCCCTTATTTAGGAGGGTTTCCAC</genome_strand>
        <mrna_strand>GAATTACAAAAGAGAGAAAAGAAGAGTGAGACATCACAGAGGAAAATAATCTCTAAGGAAA-AATAGAGAGTGTGAGCGATATTGTAGTGAGATGGAAAAATCAAAAGAGTGTTATTTCTTTTGAATGTGTAGTGATCTTTAGAGTTTTACTCAAACATACAAGTGTAAAATCCTTACTATAGTGATATTCGTTGCTTCTCTTGGGTCGTGGTTTTTCTCTTATTTAGGAGGGTTTCCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>15</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="14836" PGL_stop="14428"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14836" e_stop="14428"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.924"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.924">
            <gDNA_exon_boundary e_start="14836" e_stop="14428" e_length="409"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14836" stop="14428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241790" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTAGGCTCGTACCTTGAGGAGCATCATCTTCCTTCAAAGATAGTATCTCTTTAGAAATTTGGCATTAATAGGACCGATCCTTAAGCCATCAGCATCAACAAGCTTGTAAGCACCATTTGAATATGCTTCTTGTATGACATATGGTCCACCCCACTTTGAGGTAAATTTGGCCCCAGACTTGTGTAAAGTAATGATTGGTATTCTTACCGCGAGAACTTGATCTCCAACTTGAAAGCACCTCAAGCGAACCTTTTTATTAAAAGCACGAGATAGACGAGCTAGATAACATTCAAGGTTTTGTTGGGCTTCTAACCTCTTTTCATCAAGTGCTTCTAACTCAGCAAGAAGCAATCAAGCATTTTCTTCCTAGGTGAGCACTTCTTGAATAGCAAGCCTTAAGGAGGGTAT</gDNA_template>
            <first_frame> F  R  L  V  P  *  G  A  S  S  S  F  K  D  S  I  S  L  E  I  W  H  *  *  D  R  S  L  S  H  Q  H  Q  Q  A  C  K  H  H  L  N  M  L  L  V  *  H  M  V  H  P  T  L  R  *  I  W  P  Q  T  C  V  K  *  *  L  V  F  L  P  R  E  L  D  L  Q  L  E  S  T  S  S  E  P  F  Y  *  K  H  E  I  D  E  L  D  N  I  Q  G  F  V  G  L  L  T  S  F  H  Q  V  L  L  T  Q  Q  E  A  I  K  H  F  L  P  R  *  A  L  L  E  *  Q  A  L  R  R  V  </first_frame>
            <second_frame>  L  G  S  Y  L  E  E  H  H  L  P  S  K  I  V  S  L  *  K  F  G  I  N  R  T  D  P  *  A  I  S  I  N  K  L  V  S  T  I  *  I  C  F  L  Y  D  I  W  S  T  P  L  *  G  K  F  G  P  R  L  V  *  S  N  D  W  Y  S  Y  R  E  N  L  I  S  N  L  K  A  P  Q  A  N  L  F  I  K  S  T  R  *  T  S  *  I  T  F  K  V  L  L  G  F  *  P  L  F  I  K  C  F  *  L  S  K  K  Q  S  S  I  F  F  L  G  E  H  F  L  N  S  K  P  *  G  G  Y </second_frame>
            <third_frame>   *  A  R  T  L  R  S  I  I  F  L  Q  R  *  Y  L  F  R  N  L  A  L  I  G  P  I  L  K  P  S  A  S  T  S  L  *  A  P  F  E  Y  A  S  C  M  T  Y  G  P  P  H  F  E  V  N  L  A  P  D  L  C  K  V  M  I  G  I  L  T  A  R  T  *  S  P  T  *  K  H  L  K  R  T  F  L  L  K  A  R  D  R  R  A  R  *  H  S  R  F  C  W  A  S  N  L  F  S  S  S  A  S  N  S  A  R  S  N  Q  A  F  S  S  *  V  S  T  S  *  I  A  S  L  K  E  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLe0009I15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="17520" PGL_stop="16738"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17520" e_stop="16738"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.926"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.926">
            <gDNA_exon_boundary e_start="17520" e_stop="16738" e_length="783"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17520" stop="16738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351082" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGCGTCAAATGGCCAAGATGCAATGGTTGGGTGCAATACTTCGGGTGGCTGATGAATGAAATTCGCATGAAATAGACAAGCATCGCATTTCCTGGCATAATATAAGCAATCATTCACCATGGTTTACCATTAATACCCCATCCTCTTTATGTGAAAATGAAGTTTTGGTCCAGATTGATGTGATCCACATACTCCTGAACGTGCTTCTTGCAGAGCTTGAGTCGCTTCTTCCTCTACCAAGCATTGTAATAACATACCCTCAAATGATCTTCAATATAATGTATCCTTGTAGTAAAGGAAACCAGGTGCACGACGCGTTATGTCAGTCCTTCTTCTTGGATTTTCTGGAAGTGTCCCATAACATAGGTAGTCAATGATGGGTTGTCTCCAATCTTCCTTCGCAGCTTCAACAATGGCGACGATATGATCAAGCTTATTTTCAATATATTCTTCCTCATTTGATGGTGGTACTATCCATTTTTTACAGATAATTACTTGCGTCTGATCAGGAAGGGTTAGCGTTGAAGCTAGAGTAGCCAATGCATCATCTTTCTTATTCTCTGTTCGACGCACATGTTGAAGGGTTACATCCCCAGGCCATCTTATCAACTTTTGAGCATAATCATGATAAGGTCGCAATTCAGGATTTTTTACCTCATAACTTCCTAAGAGTTGATTAATAACCAATTGAGAGTCACCAAAGACCTGTAAATGTAATTGTTTCATGTCAACGGCCATTTCAAGTCCATGTATCAGTGCTTGATATTCAGCGACATTATTGG</gDNA_template>
            <first_frame> K  R  Q  M  A  K  M  Q  W  L  G  A  I  L  R  V  A  D  E  *  N  S  H  E  I  D  K  H  R  I  S  W  H  N  I  S  N  H  S  P  W  F  T  I  N  T  P  S  S  L  C  E  N  E  V  L  V  Q  I  D  V  I  H  I  L  L  N  V  L  L  A  E  L  E  S  L  L  P  L  P  S  I  V  I  T  Y  P  Q  M  I  F  N  I  M  Y  P  C  S  K  G  N  Q  V  H  D  A  L  C  Q  S  F  F  L  D  F  L  E  V  S  H  N  I  G  S  Q  *  W  V  V  S  N  L  P  S  Q  L  Q  Q  W  R  R  Y  D  Q  A  Y  F  Q  Y  I  L  P  H  L  M  V  V  L  S  I  F  Y  R  *  L  L  A  S  D  Q  E  G  L  A  L  K  L  E  *  P  M  H  H  L  S  Y  S  L  F  D  A  H  V  E  G  L  H  P  Q  A  I  L  S  T  F  E  H  N  H  D  K  V  A  I  Q  D  F  L  P  H  N  F  L  R  V  D  *  *  P  I  E  S  H  Q  R  P  V  N  V  I  V  S  C  Q  R  P  F  Q  V  H  V  S  V  L  D  I  Q  R  H  Y  W </first_frame>
            <second_frame>  S  V  K  W  P  R  C  N  G  W  V  Q  Y  F  G  W  L  M  N  E  I  R  M  K  *  T  S  I  A  F  P  G  I  I  *  A  I  I  H  H  G  L  P  L  I  P  H  P  L  Y  V  K  M  K  F  W  S  R  L  M  *  S  T  Y  S  *  T  C  F  L  Q  S  L  S  R  F  F  L  Y  Q  A  L  *  *  H  T  L  K  *  S  S  I  *  C  I  L  V  V  K  E  T  R  C  T  T  R  Y  V  S  P  S  S  W  I  F  W  K  C  P  I  T  *  V  V  N  D  G  L  S  P  I  F  L  R  S  F  N  N  G  D  D  M  I  K  L  I  F  N  I  F  F  L  I  *  W  W  Y  Y  P  F  F  T  D  N  Y  L  R  L  I  R  K  G  *  R  *  S  *  S  S  Q  C  I  I  F  L  I  L  C  S  T  H  M  L  K  G  Y  I  P  R  P  S  Y  Q  L  L  S  I  I  M  I  R  S  Q  F  R  I  F  Y  L  I  T  S  *  E  L  I  N  N  Q  L  R  V  T  K  D  L  *  M  *  L  F  H  V  N  G  H  F  K  S  M  Y  Q  C  L  I  F  S  D  I  I   </second_frame>
            <third_frame>   A  S  N  G  Q  D  A  M  V  G  C  N  T  S  G  G  *  *  M  K  F  A  *  N  R  Q  A  S  H  F  L  A  *  Y  K  Q  S  F  T  M  V  Y  H  *  Y  P  I  L  F  M  *  K  *  S  F  G  P  D  *  C  D  P  H  T  P  E  R  A  S  C  R  A  *  V  A  S  S  S  T  K  H  C  N  N  I  P  S  N  D  L  Q  Y  N  V  S  L  *  *  R  K  P  G  A  R  R  V  M  S  V  L  L  L  G  F  S  G  S  V  P  *  H  R  *  S  M  M  G  C  L  Q  S  S  F  A  A  S  T  M  A  T  I  *  S  S  L  F  S  I  Y  S  S  S  F  D  G  G  T  I  H  F  L  Q  I  I  T  C  V  *  S  G  R  V  S  V  E  A  R  V  A  N  A  S  S  F  L  F  S  V  R  R  T  C  *  R  V  T  S  P  G  H  L  I  N  F  *  A  *  S  *  *  G  R  N  S  G  F  F  T  S  *  L  P  K  S  *  L  I  T  N  *  E  S  P  K  T  C  K  C  N  C  F  M  S  T  A  I  S  S  P  C  I  S  A  *  Y  S  A  T  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0009I15.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17460" stop="17143"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>315</number_coding_nucleotides>
                  <number_encoded_amino_acids>105</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSHEIDKHRISWHNISNHSPWFTINTPSSLCENEVLVQIDVIHILLNVLLAELESLLPLPSIVITYPQMIFNIMYPCSKGNQVHDALCQSFFLDFLEVSHNIGSQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="28947" PGL_stop="27354"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28947" e_stop="27354"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.965"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.965">
            <gDNA_exon_boundary e_start="28947" e_stop="27354" e_length="1594"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28947" stop="28237"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331947" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28371" stop="27735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28331" stop="27705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209835" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28331" stop="27757"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209830" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28281" stop="27730"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299938" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28116" stop="27354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211563" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28089" stop="27520"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201786" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27786" stop="27388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200850" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATAATGCAACAAGGTGAAGATTTTGAGCCAAAATCTGTTCACGAATGTAGACAGAGAAATGATTGGCCAAAATGGAAGGATGCAATTCAAGCTGAATTGGCTTCACTAGAAAAACATGAAGTTTTTGGACCGATAATCCGAACACCTGAAGGTATCAAGCCAGTAGGGTACAAATGGGTTTTTGTACGAAAAAGAAATGAGAAAGGTGAAGTCATGAGATATAAGGCCCGACTCGTTACTCAATGTTTTTCTCAAAGACCTGACATTGATTATATGGAGACATATTCTCCAGTGGTAGATGCAATCACCTTCAAATATTTCATAAATCTGACAGTTCATGAAAAACTTGAAATGCGTCTATTGGACGTTGTCACAACCTATCTATATGGCTCATTGGACCACAACATTTTCATGAAAATTCCAAAATCATTCCAAGTGCCTGAAGTATACAAAGATTCAAGAGAAACTTGTTCAATAAAGCTTCAGAAATCTCTGTATGGATTGAAACAATCAGGAAGGATGTGGTACAATCGTCTGAGTGAATATTTGTTAAAGAAAGGGTACAAAAATGACCCGATTTGTCCCTGCATTTTCATTAAACGGTCGGGGTTTGAATTTGTAATAATAGTTGTGTATGTTGATGATTAGAACATCATTGGCACTCGTAAAGAGATTTTAGAAGCTATTGAGTGTCTTAAAAAAGAATTTGAAATGAATGATCTTGCCAAGACAAAATTTTGTCTTGGCCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAGGCGTTTTTACATGGATAACTCACATCCATTGAGTACTCCAATGGTGGTAAGATCATTTGACATCAATACAGATCCATTTCGACCTTAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAAGAATACTCGACGAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATTGGTTTATTCTATTCCAATGAATTCAAGTCAGAACTGATTGGTTATGCAGATGCAGGGTATTTATCTGATCCGCATAAAGCTCGATCACAAACAGGCTATTTGTTTACATGTGGAGACGCGGCGATATCTTAGCGATCAATGAAGCTAACGTTGGTAACCACTTCTTCAAATCATGCAGAAATAATAGCCATCCATGAAGCAAGTCGAGAGTGCGTCTGGTTGAGATCAATGACCCATCATATTCAAAAAATGTGTGGTTTTTCTTTGAAAAAGAATATGCCAACCACAATGTACGAAGATAATGCTGCATGTATAGCTCAATTGAAAGGAGGATACATCAAAGGAGACCGGACAAAGCATATCTCACCAAAGTTCTTTTTCACGCATGATCTTCAACAAAATGGTGAGATAGAAGTTCAACAAATTCGTTCAAGTGATAATCTTGCTGATTTATTCACTAAGGCATTGCCAACATCAACGTTTGAGAAGTTG</gDNA_template>
            <first_frame> K  *  C  N  K  V  K  I  L  S  Q  N  L  F  T  N  V  D  R  E  M  I  G  Q  N  G  R  M  Q  F  K  L  N  W  L  H  *  K  N  M  K  F  L  D  R  *  S  E  H  L  K  V  S  S  Q  *  G  T  N  G  F  L  Y  E  K  E  M  R  K  V  K  S  *  D  I  R  P  D  S  L  L  N  V  F  L  K  D  L  T  L  I  I  W  R  H  I  L  Q  W  *  M  Q  S  P  S  N  I  S  *  I  *  Q  F  M  K  N  L  K  C  V  Y  W  T  L  S  Q  P  I  Y  M  A  H  W  T  T  T  F  S  *  K  F  Q  N  H  S  K  C  L  K  Y  T  K  I  Q  E  K  L  V  Q  *  S  F  R  N  L  C  M  D  *  N  N  Q  E  G  C  G  T  I  V  *  V  N  I  C  *  R  K  G  T  K  M  T  R  F  V  P  A  F  S  L  N  G  R  G  L  N  L  *  *  *  L  C  M  L  M  I  R  T  S  L  A  L  V  K  R  F  *  K  L  L  S  V  L  K  K  N  L  K  *  M  I  L  P  R  Q  N  F  V  L  A  Y  R  L  R  I  C  Q  M  E  Y  L  F  I  N  Q  R  T  Q  K  R  Y  *  G  V  F  T  W  I  T  H  I  H  *  V  L  Q  W  W  *  D  H  L  T  S  I  Q  I  H  F  D  L  K  R  M  M  K  S  F  L  V  M  K  L  L  I  L  V  R  S  G  H  *  C  T  L  L  R  I  L  D  E  I  S  V  L  Q  *  V  Y  W  Q  D  Q  F  L  P  N  K  K  T  L  E  W  C  *  T  H  T  S  I  S  S  R  D  H  G  H  W  F  I  L  F  Q  *  I  Q  V  R  T  D  W  L  C  R  C  R  V  F  I  *  S  A  *  S  S  I  T  N  R  L  F  V  Y  M  W  R  R  G  D  I  L  A  I  N  E  A  N  V  G  N  H  F  F  K  S  C  R  N  N  S  H  P  *  S  K  S  R  V  R  L  V  E  I  N  D  P  S  Y  S  K  N  V  W  F  F  F  E  K  E  Y  A  N  H  N  V  R  R  *  C  C  M  Y  S  S  I  E  R  R  I  H  Q  R  R  P  D  K  A  Y  L  T  K  V  L  F  H  A  *  S  S  T  K  W  *  D  R  S  S  T  N  S  F  K  *  *  S  C  *  F  I  H  *  G  I  A  N  I  N  V  *  E  V  </first_frame>
            <second_frame>  N  N  A  T  R  *  R  F  *  A  K  I  C  S  R  M  *  T  E  K  *  L  A  K  M  E  G  C  N  S  S  *  I  G  F  T  R  K  T  *  S  F  W  T  D  N  P  N  T  *  R  Y  Q  A  S  R  V  Q  M  G  F  C  T  K  K  K  *  E  R  *  S  H  E  I  *  G  P  T  R  Y  S  M  F  F  S  K  T  *  H  *  L  Y  G  D  I  F  S  S  G  R  C  N  H  L  Q  I  F  H  K  S  D  S  S  *  K  T  *  N  A  S  I  G  R  C  H  N  L  S  I  W  L  I  G  P  Q  H  F  H  E  N  S  K  I  I  P  S  A  *  S  I  Q  R  F  K  R  N  L  F  N  K  A  S  E  I  S  V  W  I  E  T  I  R  K  D  V  V  Q  S  S  E  *  I  F  V  K  E  R  V  Q  K  *  P  D  L  S  L  H  F  H  *  T  V  G  V  *  I  C  N  N  S  C  V  C  *  *  L  E  H  H  W  H  S  *  R  D  F  R  S  Y  *  V  S  *  K  R  I  *  N  E  *  S  C  Q  D  K  I  L  S  W  P  T  D  *  E  F  V  K  W  N  T  C  S  S  I  N  V  H  R  K  D  T  K  A  F  L  H  G  *  L  T  S  I  E  Y  S  N  G  G  K  I  I  *  H  Q  Y  R  S  I  S  T  L  R  E  *  *  R  A  S  W  *  *  N  S  L  S  *  C  D  R  G  T  N  V  P  C  *  E  Y  S  T  R  Y  L  F  C  S  K  S  T  G  K  I  S  S  S  P  T  K  R  H  W  N  G  V  K  H  I  L  R  Y  L  R  G  T  M  D  I  G  L  F  Y  S  N  E  F  K  S  E  L  I  G  Y  A  D  A  G  Y  L  S  D  P  H  K  A  R  S  Q  T  G  Y  L  F  T  C  G  D  A  A  I  S  *  R  S  M  K  L  T  L  V  T  T  S  S  N  H  A  E  I  I  A  I  H  E  A  S  R  E  C  V  W  L  R  S  M  T  H  H  I  Q  K  M  C  G  F  S  L  K  K  N  M  P  T  T  M  Y  E  D  N  A  A  C  I  A  Q  L  K  G  G  Y  I  K  G  D  R  T  K  H  I  S  P  K  F  F  F  T  H  D  L  Q  Q  N  G  E  I  E  V  Q  Q  I  R  S  S  D  N  L  A  D  L  F  T  K  A  L  P  T  S  T  F  E  K  L </second_frame>
            <third_frame>   I  M  Q  Q  G  E  D  F  E  P  K  S  V  H  E  C  R  Q  R  N  D  W  P  K  W  K  D  A  I  Q  A  E  L  A  S  L  E  K  H  E  V  F  G  P  I  I  R  T  P  E  G  I  K  P  V  G  Y  K  W  V  F  V  R  K  R  N  E  K  G  E  V  M  R  Y  K  A  R  L  V  T  Q  C  F  S  Q  R  P  D  I  D  Y  M  E  T  Y  S  P  V  V  D  A  I  T  F  K  Y  F  I  N  L  T  V  H  E  K  L  E  M  R  L  L  D  V  V  T  T  Y  L  Y  G  S  L  D  H  N  I  F  M  K  I  P  K  S  F  Q  V  P  E  V  Y  K  D  S  R  E  T  C  S  I  K  L  Q  K  S  L  Y  G  L  K  Q  S  G  R  M  W  Y  N  R  L  S  E  Y  L  L  K  K  G  Y  K  N  D  P  I  C  P  C  I  F  I  K  R  S  G  F  E  F  V  I  I  V  V  Y  V  D  D  *  N  I  I  G  T  R  K  E  I  L  E  A  I  E  C  L  K  K  E  F  E  M  N  D  L  A  K  T  K  F  C  L  G  L  Q  I  E  N  L  S  N  G  I  L  V  H  Q  S  T  Y  T  E  K  I  L  R  R  F  Y  M  D  N  S  H  P  L  S  T  P  M  V  V  R  S  F  D  I  N  T  D  P  F  R  P  *  E  N  D  E  E  L  L  G  D  E  T  P  Y  L  S  A  I  G  A  L  M  Y  L  A  K  N  T  R  R  D  I  C  F  A  V  S  L  L  A  R  S  V  P  P  Q  Q  K  D  I  G  M  V  L  N  T  Y  F  D  I  F  E  G  P  W  T  L  V  Y  S  I  P  M  N  S  S  Q  N  *  L  V  M  Q  M  Q  G  I  Y  L  I  R  I  K  L  D  H  K  Q  A  I  C  L  H  V  E  T  R  R  Y  L  S  D  Q  *  S  *  R  W  *  P  L  L  Q  I  M  Q  K  *  *  P  S  M  K  Q  V  E  S  A  S  G  *  D  Q  *  P  I  I  F  K  K  C  V  V  F  L  *  K  R  I  C  Q  P  Q  C  T  K  I  M  L  H  V  *  L  N  *  K  E  D  T  S  K  E  T  G  Q  S  I  S  H  Q  S  S  F  S  R  M  I  F  N  K  M  V  R  *  K  F  N  K  F  V  Q  V  I  I  L  L  I  Y  S  L  R  H  C  Q  H  Q  R  L  R  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0009I15.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28945" stop="28298"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>645</number_coding_nucleotides>
                  <number_encoded_amino_acids>215</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IMQQGEDFEPKSVHECRQRNDWPKWKDAIQAELASLEKHEVFGPIIRTPEGIKPVGYKWVFVRKRNEKGEVMRYKARLVTQCFSQRPDIDYMETYSPVVDAITFKYFINLTVHEKLEMRLLDVVTTYLYGSLDHNIFMKIPKSFQVPEVYKDSRETCSIKLQKSLYGLKQSGRMWYNRLSEYLLKKGYKNDPICPCIFIKRSGFEFVIIVVYVDD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0009I15.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27713" stop="27354"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>360</number_coding_nucleotides>
                  <number_encoded_amino_acids>120</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RSMKLTLVTTSSNHAEIIAIHEASRECVWLRSMTHHIQKMCGFSLKKNMPTTMYEDNAACIAQLKGGYIKGDRTKHISPKFFFTHDLQQNGEIEVQQIRSSDNLADLFTKALPTSTFEKL</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0009I15.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27968" stop="27714"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EYSTRYLFCSKSTGKISSSPTKRHWNGVKHILRYLRGTMDIGLFYSNEFKSELIGYADAGYLSDPHKARSQTGYLFTCGDAAIS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0009I15.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28297" stop="28043"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NIIGTRKEILEAIECLKKEFEMNDLAKTKFCLGLQIENLSNGILVHQSTYTEKILRRFYMDNSHPLSTPMVVRSFDINTDPFRP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="30700" PGL_stop="30332"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30700" e_stop="30332"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.921"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.921">
            <gDNA_exon_boundary e_start="30700" e_stop="30332" e_length="369"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30700" stop="30332"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332350" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTATGAATATGGCATATGTCAACACAATATCAGGTAGTACAAAATTAATTGAGGGCTCTGGAAGAGCGACCTTATTACTACTTGGAGGGACAATATTAAGCATTGATAATGCATTATATTGTAGTAAGTCTCAAAGAAACTTATTAAGTTCAAAGTTATTCGTCAAAATGGCTATCATGTTGAGACGGCTAATGAAGGAAAGGTTGAATATCTTTACATTACTACAATTAATGTAAAGAAGAAAATTGTGCATGAAAAATTACCTGCATTTTCTTCTGGGTTGTACTATACAAGTATAAGTACAGTTGAATCACATGCCGTAGTAAATAAAAGGTTAATTAATTTTAATGATTTTATCATTTGGCATG</gDNA_template>
            <first_frame> V  M  N  M  A  Y  V  N  T  I  S  G  S  T  K  L  I  E  G  S  G  R  A  T  L  L  L  L  G  G  T  I  L  S  I  D  N  A  L  Y  C  S  K  S  Q  R  N  L  L  S  S  K  L  F  V  K  M  A  I  M  L  R  R  L  M  K  E  R  L  N  I  F  T  L  L  Q  L  M  *  R  R  K  L  C  M  K  N  Y  L  H  F  L  L  G  C  T  I  Q  V  *  V  Q  L  N  H  M  P  *  *  I  K  G  *  L  I  L  M  I  L  S  F  G  M </first_frame>
            <second_frame>  L  *  I  W  H  M  S  T  Q  Y  Q  V  V  Q  N  *  L  R  A  L  E  E  R  P  Y  Y  Y  L  E  G  Q  Y  *  A  L  I  M  H  Y  I  V  V  S  L  K  E  T  Y  *  V  Q  S  Y  S  S  K  W  L  S  C  *  D  G  *  *  R  K  G  *  I  S  L  H  Y  Y  N  *  C  K  E  E  N  C  A  *  K  I  T  C  I  F  F  W  V  V  L  Y  K  Y  K  Y  S  *  I  T  C  R  S  K  *  K  V  N  *  F  *  *  F  Y  H  L  A   </second_frame>
            <third_frame>   Y  E  Y  G  I  C  Q  H  N  I  R  *  Y  K  I  N  *  G  L  W  K  S  D  L  I  T  T  W  R  D  N  I  K  H  *  *  C  I  I  L  *  *  V  S  K  K  L  I  K  F  K  V  I  R  Q  N  G  Y  H  V  E  T  A  N  E  G  K  V  E  Y  L  Y  I  T  T  I  N  V  K  K  K  I  V  H  E  K  L  P  A  F  S  S  G  L  Y  Y  T  S  I  S  T  V  E  S  H  A  V  V  N  K  R  L  I  N  F  N  D  F  I  I  W  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0009I15.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30572" stop="30333"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VSKKLIKFKVIRQNGYHVETANEGKVEYLYITTINVKKKIVHEKLPAFSSGLYYTSISTVESHAVVNKRLINFNDFIIWH</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0009I15.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30700" stop="30464"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VMNMAYVNTISGSTKLIEGSGRATLLLLGGTILSIDNALYCSKSQRNLLSSKLFVKMAIMLRRLMKERLNIFTLLQLM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="45236" PGL_stop="44996"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45236" e_stop="44996"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.929"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.929">
            <gDNA_exon_boundary e_start="45236" e_stop="44996" e_length="241"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45236" stop="44997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372869" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45235" stop="44996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298763" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45235" stop="44997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372870" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45235" stop="44997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378778" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAATTACAAAGGACAGAAAGAAGAGGGAGGCATCACAGAGGAAAATAATCTGTGAGGAAAAAATAGAGAGTGTGAGCGATATTGTAGTGAGGTGGAAAAATCAAAAGAGTGTTATTTCTTTTGAATGTGTAGTGGTCTTTGGAGTTTTACTCAGACATACAAGTGTAAAATCCTTACTATAGTGATATTCGTTGCTCCTCTCGGGTCGTAGTTTTTCCCTTATTTAGGAGGGTTTCCACG</gDNA_template>
            <first_frame> R  I  T  K  D  R  K  K  R  E  A  S  Q  R  K  I  I  C  E  E  K  I  E  S  V  S  D  I  V  V  R  W  K  N  Q  K  S  V  I  S  F  E  C  V  V  V  F  G  V  L  L  R  H  T  S  V  K  S  L  L  *  *  Y  S  L  L  L  S  G  R  S  F  S  L  I  *  E  G  F  H  </first_frame>
            <second_frame>  E  L  Q  R  T  E  R  R  G  R  H  H  R  G  K  *  S  V  R  K  K  *  R  V  *  A  I  L  *  *  G  G  K  I  K  R  V  L  F  L  L  N  V  *  W  S  L  E  F  Y  S  D  I  Q  V  *  N  P  Y  Y  S  D  I  R  C  S  S  R  V  V  V  F  P  L  F  R  R  V  S  T </second_frame>
            <third_frame>   N  Y  K  G  Q  K  E  E  G  G  I  T  E  E  N  N  L  *  G  K  N  R  E  C  E  R  Y  C  S  E  V  E  K  S  K  E  C  Y  F  F  *  M  C  S  G  L  W  S  F  T  Q  T  Y  K  C  K  I  L  T  I  V  I  F  V  A  P  L  G  S  *  F  F  P  Y  L  G  G  F  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLe0009I15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 55 chains have been computed
$ 
$ memory statistics:
$ 31624 bytes spliced alignments in total
$ 15 spliced alignments have been stored
$ 2108 bytes was the average size of a spliced alignment
$ 10232 bytes predicted gene locations in total
$ 5 predicted gene locations have been stored
$ 2046 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 71 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-14 17:46:04
-->
