<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-02-02 14:58:00"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09SLe0045A18-gKVbu/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C09SLe0045A18-gKVbu/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0045A18-gKVbu/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M1896" ref_strand="+" ref_description="SGN-M1896 T1285 [cos_markers]">
      <seq>ttgctgctgctccaattgccagtcgagtggttggacatcaccgtcatcgtcataatcggccgagagcccgtgtttccccatctcctgcagtgggctcaggttgtggcgaggtctgtgcagagccatttgcttctgttccttttgttacaccttgcacttgtgtgtttccaatgaaagtcagacttctcttagacaagtcgctttattctatatttcctgtggttagagatctgggtattgaggttgcaaaaggaacctatctacgtccaagtcaagttgttgtagttggagctagtgctgataatcaaaatcaagaaagaacaattgttgatattaacttggttcccctggaggataagtttgataacaccacagctatgctgatctatgaaagattctggaaaaagaagatgcctctcaatagaacgatgtttggggattatgatgtgatgcatattatgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0045A18-gKVbu/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C09SLe0045A18.1" temp_strand="-" temp_description="C09SLe0045A18.1  AC234416.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0045A18 upload_account_name:spain (1 - 107156)">
        <position start="77263" stop="70955"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76963" g_stop="76865" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76864" i_stop="71619" i_length="5246">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71618" g_stop="71255" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="463" r_length="364" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0045A18.1" gen_strand="-" ref_id="SGN-M1896" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0045A18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M1896" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76963" e_stop="76865"/>
          <exon e_start="71618" e_stop="71255"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCTGCTGCTCCAATTGCCAGTCGAGTGGTTGGACATCACCGTCATCGTCATAATCGGCCGAGAGCCCGTGTTTCCCCATCTCCTGCAGTGGGCTCAGGTATTATTGCTGTTGTAATTGATAATATCCTGTCAATCCTATGCTACTCTCTTTCATTACTTCAACTTTAGGACAAAATATGGACCAAAGGCAAAAATGAAATGCAAATAGGATGAAGGCCAAGGTTGCCGTGTTTGAGGGATATATATATATATATTATATATATGGGTTATATATAACATGTGTATTGCATGTATATTGGTTATAATTGTCAGCTTATATGTTACAATCGTGATCTGTTCAACTTGTTTCATAGATGTCTAGAATTGCCAACGAACCCCCTCATCCTCATTAGCACTGCAGCTACATCCTTTCTCTACCCTCAAGGGGTTGTTTGGTTTTCTGATAAGTTGCACATGATTTTAAGGTAGGGAGTTTGTAATATGGTGATATATAGACTAAAGTACTGTACTTATTATTGGATGCTCAGTTCCGGTCGGAAATATAATGTGGATGGTCTAAAATGTATGTGTGAATTGGATAAAGATTTGTTTCCTAAAACACTCTTGGCCAATAATAAAACCTTATCCAATCTATTACCAGTTTACTACCTTGTGTAATTGAGATAAAACTATTTTTGTGATAAGCAATATTTAGTGTAATGCAATATAATTTCAATTAAAATATATACTACTAGTTTTCAGTTACCTCAAATACACAACAATTTTTAAGAAGAAAGATAAAATGGGGTATACTAAAATATTTAGATAAATAAAGAATAATGAAATCTTGATTTTAGATGTGAAATCTATTATAGGAAAAAATTCTTACATTCTGAAATCAACACTACAAACAGTTTGGAAACAAAAGAGAGATAATAAGTGAGAGATGGTTAACTAAACAAGAAATAGTTTGTCGTGTATTTTGTCATTTACGTAAAAAGCGTGATACTTAAGACTACCTATGGTATTCTAAGGGTTTGTTTGGTAGGGTGGTAATTAGGCAACACATATTATTTAATCCCTTTTGGTAGTGCTTTCAACCTATATAACACCCTACTCAGTACTATTCTTATACATAGTAAATCATGCTATTAAAAATACCAGTACTATTCCTATTCTTATACACCCTATTCATTTAATACAACAAACCCAACAGTTGATAAAAGATAATGCAAGTATAACTAATCCTAGCAATATACTATTCTTAAAAACCCTACCAAACGACTCCTAAGTCCTAACTATATAGCAAATATGTTTAATGTTATTCTGGGTTGAATTCTGAGAAAAAATGCAGACGTTATGCATGCATTATCTCTGCACGAAACAAATATGATAGCCAAGCGCTGTATTGATAATGATCTGTTTTATGCGGAGGGTATTATCTCCTTTACCTTAAAGTTTCAAACCAGATATGCTCTTGATGTACTACTCTTGTTCCTAAATGTATTACTCTCATTACTGAATTGATCTCCTGTGATTCTCTTTCCTGTGATCCTAAATTATTATCCACTTCATTAAAATGGGAAGTTAATGCAATTTGCATAGGACGGGGGACCTATATGAGATTTACTTCTACTCCTAAAAGTAAAATGTTATATGATCAATATATTAGTCCATTTAACACTGAGCACCTCATACTTTTTACTGCTGATAATGTGCTACACAGAACTAGGGCATTCTACATATAAGATAGAGAATCTAGATATCATAAATTTAATAGTAGGCTGCAAAGGGATCTTCTGCTTTGTGATTTTCCTAATACAAAAACTTTTAGGGCCCTGATCTATGTAGACTATGGAAGTATTGTCCCATCCACTAAGATGCTGTACATAATATCCAAACTATTGTAAATTCTCACAAACTTAGACTCTTTTAAGATTTCTTTTCGGGTATTTCTTGGGCTCTAATAAGATGAAGTTAGATTTAGATGGATGGTATATGACCATCAATATATAATTCTGCATATTTAAATTTATAATCTTCGAGTTGGGCAGCTAATCACCAGACAAACTGAACAAAAGATAAGGAGAGACATGGATGCCTGATTCAGAGGGGTACTGGGGATGAATGAGAACCTTGTGGCTTGGAGACAAACATTATTTTCTTAACATCTTATTAGATAAGAGCATGCTAAGATACAAAAGATTGTGAGAGACCTACAGGCTGCCCCTGAGATTGGAATTGGATGAGCTGCACCTCTATTGTTTCCTAAGTTGCTCGGACTTTTCACTTTCACTGCCACACCCGTGTTGACACGACGTGGATGTGGGATCCATACCCGTTCTGGTCAACCGTTTTGGGTACTTTAACCAAATTCGAGGGAGAAATTCTGGACAGATTCAATGATTTTTGTCATCAAACAAAAACTAAGATGATATCAAAGAGAATGGAAAATCTTTTATATATGAATATGCATTGTCACTCCCTTCCCTTTATCTTCTTCTAGGATTCTCCTCTTGACCAATATTTTCTCCTCAAGTTTTCCACATAATATCTCATAATTTAGGTTTTAGAACTCTATTTTTAGATATTTGAATTATTTTTAGCCAAATCCCCATGCGCATATTCATACATGGATCCGTTTCCCCAAATATGAAAATTTAGATCATAAAGGATCTAACATCTAGATCTGCACCCGTATAGGACACATGCACCTGAGTTCAAGCAACTTAGCAGCATCTGTTCAAAGTGATCCTTTTCGTCAGGCCGATATTGGCCAGATTAGGCGTTGCAGCCTCAATCACGTGGTGTACTTGATCGGCTTCTATTCCAATTGTTGTGGTTGTTCCACAATATTAAGCTTTGCCACAACTCTGGTCCTCTAAGTTGCTCGGACTTGGATGCAGGTGTTCGATAAGGGTGTGCATCTATAGGTTGGATCCTTCATGGTCTAATTTTTAAGATCCGGGATATGAATCCATATATGGATATGAGTGTGGGGATTCGCCTAATAATAATTAAAATATCTAAAAATAGAGTAAAGATCTAAATTATGAGATATCATAGGTAGAACATGAGGAGAATCCTGGAAAGTGATTAAAGAATAAGGAGTGACATAGAAATTTCTATATAAAGGTATTCTATTTTCTTCAATTTTACCTTAGCTTTGTATTGATTACAGAAATCACTAAAACTGTCCAGATTTCCCCATCAATTTTGGTCAAAGTACCCAAAATCAGTTGACCAAATCGGACATGAATCCCATGTCATGTCGACACAGGCGCAACACCAAAAGTGAAGAGTGATAACTTAGCTGGCTCTTGCCTCAACCCTCCTCCTTAACCTATATAGTGTTCTCTCTGCTTTGGGATTGTAAGGAGGAAGCTTCTGCTTCTTTCCATACACAGAGTGACACCTGAGGAAACAAAAACAATGAACAAAAAGTAAAACCTGAACAATTAATAAATAACAACTTAAACTATATAGATAGCTATTTCTAAGTCCTCGACAATGGTGCCAAAAACTTGTTATGGTCCATCTACACACAAGTGTACGTAGTTAATCAAGTAATATAATGATAAGAGTAGAATGTCGTACTCACATGTACTAATTTTTAGCTAGTACTGTTCAAACTGAAATGAATTCTTTCTTCAAGTGTTTTTCCAAGAGTTCTTGAATATTATTTAAGTACTCGCTACAATTACTTGATAAGCAATTAAATTGAAAACTTTTGCACAACAACGTGAGCAAGTAAGTGTTGAACAATAAATGTGAATAATCTAGGGTTACGGTATCTACGTCAATCCCGCTGAGTTTTCCAGTTAAACTAATTACTTGATGATATATAGGTTATTGGTTGACAAGGTTTATATTACTGCAATTTTTTGTCAAACAATTAAAAGCCTATTCAAGTTATCTAACTCTATGTCTAGCAGAATAGAATTAACAAGAATTGCCTTAATATTTCCTGTATATCAACCATTTAACATCAACATTCATGAACAATCCAGAACCCCATAATTAAGAACTTAGCCACTCATAATCATGGAAAGAATCACGAGTATTTGAAAAGCATAAAATATAAAGATGAGATGGAAGAAAAAGAAACTAGGTGAAACCTATAATCAGCTGGAGTTTTTGCTCTTCTATGGTCAAACATTCCTCAAAAATGAGTTTCTAACCTATTTTGAACGTGTACAAACATACTCCGGCCTAAATCACCCTTGAAATAAAACACTGCAAAAAATCAGCTCCAACTTGGCCTACGTGCACCCAGCGTCGTGCATGCTCAACTTTCCCTGTGCTCCACCAACTCGTTTAGGTTCATCATGCAAGGCTGGAGCGTTGTGTTGCGCACACTGTTTTGCATGCATGTTCTCAATTTTCTTCCATCCTTCACATGTACGTCCTTGATCCCCGACTCAATCTCGTTTGAGTTTCTTGCACTTCTACTCGGACTTTGAAGCTCCAAATCATTTGTTCTAGCTAATTAGCTTGAAAACTATTCCTACACAGAAAATACACGTAATAAGCACGGCAGAATCAAAGTTTACTCAAATAACGGCAAAGGATCTTAAATGTGAGATAATCAATGCCGAACATCATTGGTCAAGTAAGAAAAGGACTTCACAAATGTGAAATATAGGAAAAAATCTCCCTCTGGTGTCCCAACGAGTAGCATGTAGGTCTTGTAAAATTTAAACAAAAATCTAGCACATAATTGGTTTTGTGTTAGGACCTGTCTGATTTCTGTTTCTAAGGTTCCTTTTTTAGATGACATCCGGACAATTAGAGTTGAGGCAAACTAAGTAGTGGAAGTGCTTTCAGTGTGAGGAGAATATTTCACATTTAACTGTTCTCATATTACAGAGAGGATGTGTTACTGTATGTTGTGTTTTCTTTTCTTTATTATGCTTCTGTGCCTTCATTATATTTCTGAGTTTGGTGTCAGAATTAATTAGGTCAAAACAGATGAAAGAGGGGTGGCACTAGTTGCATAATAAGGATGATAGAGACAAATAAAAATTAATTAGCAATCACATGATTGAGTTTGCTAAATAGCTAATCGGAAAAAGATTTAGATTCCATTTGAATTTATGTATTGGTTGTGAAAGGAATGCTCTATTTATGTTTGTTGCTACATATCAACTGTCAACAAATTCCTTAATAGCATAATAGAGCCCAAAGGATAGAACAGCTTTATTTGTTTAACTTCCCCCCTACCTTCCGTTTTTGTATACAATATTAATTGAAATCATCATTGACATGCTTAACATGCTAATCTAAATCCTCTATATCATTTGTCCTAGAGTTATGTTCCTCATACATGATATCTGATGTTGAATATTCTTAACAAATTTGCAGGTTGTGGCGAGGTCTGTGCAGAGCCATTTGCTTCTGTTCCTTTTGTTACACCTTGCACGTGTGTGTTTCCAATGAAAGTTAGACTTCTCTTAGACAAGTCGCTTTATTCTATATTTCCTGTGGTTAGAGATCTGGGTATTGAGGTTGCAAAAGGAACCTATCTACGTCCAAGTCAAGTTGTTGTAGTTGGAGCTAGTGCTGATAATCAAAATCAAGAAAGAACAATTGTTGATATTAACTTGGTTCCCCTGGAGGATAAGTTTGATAACACCACAGCTATGCTGATCTATGAAAGATTCTGGAAAAAGAAGATGCCTCTCAATAGAACGATGTTTGGGGATTATGATGTGATGCATATTATGTA</genome_strand>
        <mrna_strand>TTGCTGCTGCTCCAATTGCCAGTCGAGTGGTTGGACATCACCGTCATCGTCATAATCGGCCGAGAGCCCGTGTTTCCCCATCTCCTGCAGTGGGCTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGGCGAGGTCTGTGCAGAGCCATTTGCTTCTGTTCCTTTTGTTACACCTTGCACTTGTGTGTTTCCAATGAAAGTCAGACTTCTCTTAGACAAGTCGCTTTATTCTATATTTCCTGTGGTTAGAGATCTGGGTATTGAGGTTGCAAAAGGAACCTATCTACGTCCAAGTCAAGTTGTTGTAGTTGGAGCTAGTGCTGATAATCAAAATCAAGAAAGAACAATTGTTGATATTAACTTGGTTCCCCTGGAGGATAAGTTTGATAACACCACAGCTATGCTGATCTATGAAAGATTCTGGAAAAAGAAGATGCCTCTCAATAGAACGATGTTTGGGGATTATGATGTGATGCATATTATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>1</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="76963" PGL_stop="71255"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="76963" e_stop="76865"/>
            <exon e_start="71618" e_stop="71255"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.986" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="76963" e_stop="76865" e_length="99"/>
          </exon>
          <intron i_serial="1" don_prob="0.986" acc_prob="0.999">
            <gDNA_intron_boundary i_start="76864" i_stop="71619" i_length="5246"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="71618" e_stop="71255" e_length="364"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76963" stop="76865"/>
              <exon start="71618" stop="71255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M1896" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGCTGCTGCTCCAATTGCCAGTCGAGTGGTTGGACATCACCGTCATCGTCATAATCGGCCGAGAGCCCGTGTTTCCCCATCTCCTGCAGTGGGCTCAG : GTTGTGGCGAGGTCTGTGCAGAGCCATTTGCTTCTGTTCCTTTTGTTACACCTTGCACGTGTGTGTTTCCAATGAAAGTTAGACTTCTCTTAGACAAGTCGCTTTATTCTATATTTCCTGTGGTTAGAGATCTGGGTATTGAGGTTGCAAAAGGAACCTATCTACGTCCAAGTCAAGTTGTTGTAGTTGGAGCTAGTGCTGATAATCAAAATCAAGAAAGAACAATTGTTGATATTAACTTGGTTCCCCTGGAGGATAAGTTTGATAACACCACAGCTATGCTGATCTATGAAAGATTCTGGAAAAAGAAGATGCCTCTCAATAGAACGATGTTTGGGGATTATGATGTGATGCATATTATGTA</gDNA_template>
            <first_frame> L  L  L  L  Q  L  P  V  E  W  L  D  I  T  V  I  V  I  I  G  R  E  P  V  F  P  H  L  L  Q  W  A  Q  :  V  V  A  R  S  V  Q  S  H  L  L  L  F  L  L  L  H  L  A  R  V  C  F  Q  *  K  L  D  F  S  *  T  S  R  F  I  L  Y  F  L  W  L  E  I  W  V  L  R  L  Q  K  E  P  I  Y  V  Q  V  K  L  L  *  L  E  L  V  L  I  I  K  I  K  K  E  Q  L  L  I  L  T  W  F  P  W  R  I  S  L  I  T  P  Q  L  C  *  S  M  K  D  S  G  K  R  R  C  L  S  I  E  R  C  L  G  I  M  M  *  C  I  L  C  </first_frame>
            <second_frame>  C  C  C  S  N  C  Q  S  S  G  W  T  S  P  S  S  S  *  S  A  E  S  P  C  F  P  I  S  C  S  G  L  R :   L  W  R  G  L  C  R  A  I  C  F  C  S  F  C  Y  T  L  H  V  C  V  S  N  E  S  *  T  S  L  R  Q  V  A  L  F  Y  I  S  C  G  *  R  S  G  Y  *  G  C  K  R  N  L  S  T  S  K  S  S  C  C  S  W  S  *  C  *  *  S  K  S  R  K  N  N  C  *  Y  *  L  G  S  P  G  G  *  V  *  *  H  H  S  Y  A  D  L  *  K  I  L  E  K  E  D  A  S  Q  *  N  D  V  W  G  L  *  C  D  A  Y  Y  V </second_frame>
            <third_frame>   A  A  A  P  I  A  S  R  V  V  G  H  H  R  H  R  H  N  R  P  R  A  R  V  S  P  S  P  A  V  G  S   : G  C  G  E  V  C  A  E  P  F  A  S  V  P  F  V  T  P  C  T  C  V  F  P  M  K  V  R  L  L  L  D  K  S  L  Y  S  I  F  P  V  V  R  D  L  G  I  E  V  A  K  G  T  Y  L  R  P  S  Q  V  V  V  V  G  A  S  A  D  N  Q  N  Q  E  R  T  I  V  D  I  N  L  V  P  L  E  D  K  F  D  N  T  T  A  M  L  I  Y  E  R  F  W  K  K  K  M  P  L  N  R  T  M  F  G  D  Y  D  V  M  H  I  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0045A18.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76961" stop="76865"/>
                    <exon start="71618" stop="71257"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>459</number_coding_nucleotides>
                  <number_encoded_amino_acids>153</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AAAPIASRVVGHHRHRHNRPRARVSPSPAVGSGCGEVCAEPFASVPFVTPCTCVFPMKVRLLLDKSLYSIFPVVRDLGIEVAKGTYLRPSQVVVVGASADNQNQERTIVDINLVPLEDKFDNTTAMLIYERFWKKKMPLNRTMFGDYDVMHIM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 9 chains have been computed
$ 
$ memory statistics:
$ 2280 bytes spliced alignments in total
$ 1 spliced alignments have been stored
$ 2280 bytes was the average size of a spliced alignment
$ 5560 bytes predicted gene locations in total
$ 1 predicted gene locations have been stored
$ 5560 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 9 backtrace matrices have been allocated
$ 
$ date finished: 2009-02-02 14:58:06
-->
