<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-19 11:42:59"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M9139" ref_strand="+" ref_description="SGN-M9139 C2_At5g60580 [cosii_markers]">
      <seq>cagtacatcactactactatattgtttgttacaccacattactttcttgtctctgtttttttctctcaaagcttgtaacttttgttcatgggtatttttctttactttcagtgattcaatacccaatattttctttagggttttagtttctttttctataaacccattgtttcaattaaaatggagactagtgaccagaggtctttagctgaagaggatggaaaaaactgtacaaacaatcttaattccagagttgatcctcctcctcttcttgttgaaaaggttggtgaatcaagtgaaattgtagaggaactacaactctgcgaactgcagacgaaacaactacctctggaagtacctgaaagaaccattgatggacaaacagaagattttgttaggatagacatgtccacatcaccagttcaaactcccaagagagtgattttctcgccatcgcccagtcctaaccatgtcagactaaacgaatctcctagtccctcattaccgtgggcaaaatcatccattaaatctctcctccctaaaataagtttcaaattacgaaataagacaagtgatattgaaaaagctgcaatgttagctcttggagtctctcctttgcctcaggacaaaccttcaattttgaggactctatccattaaaagaattttcaattcaaagatgaacagaacttcatcattgcctataactccaattgaacactctaatccagaatcaacgcatggtgactacagagatgctacattttattcagttaaagcaggagtgcatcccatacttcgctcacattcagtgccaacactgatcaaagatgaaagcctaaaacagatggattgcgtagggaatgtctatcgtgtagtcccctcaactcctctcgtgccaagacatgatgatacatcatcaaatgcaactcaaactattggcgcagtgttatggttcagttgaaaatgctaattttggtggagacatcactcaagaagaggctgtctgcagaatctgcttcatcgaacttggggaggattcggaaactttgaagatggagtgtagctgtaaaggcgaactagccttagctcatcaatcatgtgctgtaaaatggtttagcataaaaggcaacaagatttgtgatgtctgtaatgaagaggttcggaacttacctgtcactcttttgcggattcaaagtactattcgtagaggaaatggatccccagctgactctgtccgatacagggtttggcaggacgttcctggtcttgtccttgtcagcatgcttgcctacttttgttttctggagcatcttttggttaccagaatgggatccggcgcgattgctatatctctgcccttttcatgcatcttgggtctccttgcatccatgacagcaacaactatggtgcaaaggcgatatgcttgggtttatgctgtcagtcagtttgccttggtggttctgtttgctcatgtgttctactcactgcttcgagtgcaggcagttctagctgttcttcttgccacctttgcgggttttggaggtgtaatgtgtgggacttcttttcttcttgagcttctgaaatggaggagtagatggaattattggtcaaatgagccacatgattctcaagaaggggcacagccaaatcaatcatcagaagttactcctacgcctcaggtagaaggtcaaactcgtcgagctgaagcaggtacttctggagttgtcaatggaagttgatacaggacaaacataatctctttatatcaagaaaccaaagaaaaacactagtttctgtctcttgtaagcaaaattattgtagtgtatagctagtccttgcaaatcacaactgtacagttttgagtttatatcaaagctctcgttctaacttcagaattctaaacatgaacacgagacttgaaatgaattccactgtaggttgtaggttctttatcagggcgtaaggaatagtgttgcacgcaaaagacgagtggttcatttttccagtagatgggcagtgcatgaaaggaaactgaaataatgtaaataccataactttacaaggatctcttctcctgttatagaagaattagatcaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="+" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="62811" stop="69461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63111" g_stop="63392" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="282" r_length="282" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63393" i_stop="64407" i_length="1015">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64408" g_stop="64899" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="774" r_length="492" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64900" i_stop="65898" i_length="999">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65899" g_stop="66070" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="775" r_stop="946" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66071" i_stop="67075" i_length="1005">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.363" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67076" g_stop="67374" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="947" r_stop="1245" r_length="299" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67375" i_stop="67693" i_length="319">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67694" g_stop="67766" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1246" r_stop="1318" r_length="73" r_score="0.973"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67767" i_stop="67836" i_length="70">
            <donor d_prob="0.631" d_score="0.98"/>
            <acceptor a_prob="0.970" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67837" g_stop="67927" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1319" r_stop="1409" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="67928" i_stop="68073" i_length="146">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.764" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="68074" g_stop="68153" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1410" r_stop="1489" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="68154" i_stop="68566" i_length="413">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="68567" g_stop="69160" g_length="594"/>
          <reference_exon_boundary r_type="cDNA" r_start="1490" r_stop="2097" r_length="608" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2098" polyA_stop="2123"/>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="+" ref_id="SGN-M9139" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>2083</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M9139" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63111" e_stop="63392"/>
          <exon e_start="64408" e_stop="64899"/>
          <exon e_start="65899" e_stop="66070"/>
          <exon e_start="67076" e_stop="67374"/>
          <exon e_start="67694" e_stop="67766"/>
          <exon e_start="67837" e_stop="67927"/>
          <exon e_start="68074" e_stop="68153"/>
          <exon e_start="68567" e_stop="69160"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTACATCACTACTACTATATTGTTTGTTACACCACATTACTTTCTTGTCTCTGTTTTTTTCTCTCAAAGCTTGTAACTTTTGTTCATGGGTATTTTTCTTTACTTTCAGTGATTCAATACCCAATATTTTCTTTAGGGTTTTAGTTTCTTTTTCTATAAACCCATTGTTTCAATTAAAATGGAGACTAGTGACCAGAGGTCTTTAGCTGAAGAGGATGGAAAAAACTGTACAAACAATCTTAATTCCAGAGTTGATCCTCCTCCTCTTCTTGTTGAAAAGGTAGCTTTTTTAATGATTTCTTGTGATATTCTGCTTGAGAACTAATTTGGGGTGTTGTATATGTGTTTTGTTTCTGCTAATTGTTTCTGATTTTACCCATTTTTCAATTTGAGCTAAAAAAAAATTGATCTTGGATTGGTTTTTTCTGTCAAATTCTCAGCTTTTCCACATTTTCTCAATTTTTGCTATGGCTTTTCTTTACTCTTGATTTCTTGGGTTTGTGGAGGATATGACCTTATATAGGAGGTTGTGGAGGTTAGTAGGTTTGGAGTTTTGTTTGTTGTGGTATTAGCCTTATACTTGTAGTGAATTGCTTTTGATTTCTATTATTGTTTATTGTGTTTTGTTTATTGAAACAATTTTGTTGTTGTTAGTGTTTTCTTATTAGTTGTCATGTTTATTTTACTCTCTTTTTTTCTTATCATGCCTACTTTGATGTGTTGTATTCGAGCTGAGGGTGCTCGTGAAATAGCCTCTCTACCCTCACGATATAGGGGTCAGGTCTGCATATACTCTACTTTTCCACATATTCCACTTGTCAGATTTCATGGGGTATGTTGTTGTAATTCTATTAGATTTTTAGCTTATTACACATTTCTCTCTTGGAGCTATGGCTTCTTTTCTTATTGATTTGTTGTTACATTCTGTTTGTTTACTAACTTTGGTGCTCTATATTGGGTTCTGTTTCTGGTAACTTTGCTGCTTTTTACCATTTCTCAATTTGATCTATTTCCTTTCTTTCTTCTTCTTGATTTGTTTTGATTTGGTAAAACTGTGGATTTGGGTCTTCACCGACTGTTTTGTATTATTTTGGCATGAAGTTTCTGTCTTTGTCTTTGCTTGTATTCTTGGAACTAATACGTTGTAAACGGTGCCACGTGCTTATTCCTTGTATCTGAGAAGTGTTTAGAGTTTATATCTTTGTTTGGTTGCAAATTGGTGCAGTTATGTTAGTATGGCAATAAATAAGAAGTTGAGTAGTAACTTTGGTATTTTGGTTCTTAATATCTGTTAGGTTGGTGAATCAAGTGAAATTGTAGAGGAACTACAACTCTGCGAACTGCAGACGAAACAACTACCTCTGGAAGTACCTGAAAGAACCATTGATGGACAAACAGAAGATTTTGTTAGGATAGACATGTCCACATCACCAGTTCAAACTCCCAAGAGAGTGATTTTCTCGCCATCGCCCAGTCCTAACCATGTCAGACTAAACGAATCTCCTAGTCCCTCATTACCGTGGGCAAAATCATCCATTAAATCTCTCCTCCCTAAAATAAGTTTCAAATTACGAAATAAGACGAGTGATATTGAAAAAGCTGCAATGTTAGCTCTTGGAGTCTCTCCTTTGCCTCAGGACAAACCTTCAATTTTGAGGACTCTATCCATTAAAAGAATTTTCAATTCAAAGATGAACAGAACTTCATCATTGCCTATAACTCCAATTGAACACTCTAATCCAGAATCAACGCATGGTGACTACAGAGATGCTACATTTTATTCAGTTGTAAGTATTTATATTTGCTCGTGTCGTTAATGCTGTGATTGAATTCACTATCTTCTTCTTCCGAACTGTAAAATTCTCAGTGAGGTTATGCTCCATTGAGTAATAAATGGTAAAAAAGCACAGCCAAGGGTGTGGTCAAGGACTGGAATATATAACTCCAGTTGAACACTCTAGTCGAGGTGCATGCACCACGGTTATTAAAAAAATGGTAAAAAAGCTGCAAATTTGGGTAACTCACAAAGGAAAAAAAACTCAAGCTATGTAAACATCTGTTTACATCTTTAAGCGTTTGAATACACAAGTATGGAAGTGGAAAGACCAAATGAAAAATGAGTGTAGTTAAAACATAAGCATGATTATTCTTCCCCAACTAGATTTTAATAGGTGTTATGCTCGGACTCTTCACTTTTGGTGTTGCATCCGAGTCAACATGATGTGGGTGTGACTGTGAGATTCGTACCCGTTTTGGGTATTTTGACCGAATTTGATGGAGAAATTTTGGACAGATTCAATGATTTCTGTGCACAAAACAAAAACTGATATGAAATTGAAGAAAATGGAATACCTTGTGTATATAAATTTCTATTGTCACTCCCTTTCCTTTAATCTCCTTCCGGATTCTCCTTTTGATCAAGATTTTCTCGTCAAGTTTTACATGTAATATCTCATAATTTAGGCTTTATAACTCTATTTTTAGTTACTGTATGATTTTTAGCTGAATCCCCCGCACCTGTAGATCCGTATCCCTAAATCTAAAAATTTAGATCTTAGAGGATCCGACCTCTAGATCTGCACCCGTATCGGACACCCGCACCCGAGTCCGAGCAACTTAGGGTGTTAATGCATTTACCTGGATGTTATATCTGAATGTATGTAGAGATCCAGGATACTTTTACTGGTTTGTTGCTATGAATATAAATGTCTTCGTAATTTCACTTAATGTTCAGTATTTCCTTTTCTCTTGTTGTTTCTAAATCTTACAAACTCACCGCCTTCTAGAAAGCAGGAGTGCATCCCATACTTCGCTCACATTCAGTGCCAACACTGATCAAAGATGAAAGCCTAAAACAGATGGATTGCGTAGGGAATGTCTATCGTGTAGTCCCCTCAACTCCTCTCGTGCCAAGACATGATGATACATCATCAAATGCAACTCAAACTATTGGCGCAGGTAATTTGTTTATGTCTAATCATGTTTGATGCATTGTCACATGATAAAGGCTTTTGTTCTGCAACTGGTGATTCTTTGTTAGATAAGTCTTGAATGCTTCGTTAAGTCTGAATTTACATACCGAGTAAGAAGCAGTTGCTTGGATACATGTGTGACTTACTTTTAGGAAGCCAAACAAATAAAGAATTTTCAACCTAGGATTTCACAATACACTCTCCGTCCCTATGATGTAGTTTGACTAGGCACAATGTTTAAGTAATATGAGAAGACTTTGCTATGTTCCAAAAATTTCCTTAAAAGAAATAAATTCTTGAATAGAGGAGTACACCTTTTTGTGGACTTTTTGCCAAATAAGTGGCATCCAACATGCATAAAATGTTGATAGTGTTGTTAAATTTGCCAAGTAAGGTAAACTGTCATTCATTTTTGAACTAACTATTAAGGAGGGTGTGTCACATAAATTGACAGAGGGAGTATAAATTTATAAAAATTAGGTTGCTTAGTGGGTCATGCTAATTTCTGACGACCGCAACTTTTGTGGAGAAATATAATTAGAAGTTGTATTACACTCCCTCCGTTGCAATTTGCTTGTCTTACTTTTCTTTTTAGTCCGTTTCAAATAGAATGTCTCTTTTCCTTTTTGGCAACTCTTAAATATCAAATTTTTTACATATGACATGTTTAAGACCACAACATTAAATGACAATTTGGAATATTCTGCATATTTTTAGTTTAAGACCACAAGATTAAAAAATATTCGTTGCTTTCTTAAACTCCGTGCCATGTCAAGACCATAGAAAGAAATTGAAACAGAGGAAGTGGAATCTGATTTATATTCCAAAGAATCATCGCTCAGAATCTGGTAACTATGGGAAATCGATTTAATAACCGATATTTGGACACAGAATATTCTGTTAATCTATTCTTATGTAGATACGCATCCTGCATTCATGACTTGAACCTTATGTTCACTCACCTGGGATAACTAACCTACACCTTTCTTAGTGTTATGGTTCAGTTGAAAATGCTAATTTTGGTGGAGACATCACTCAAGAAGAGGCTGTCTGCAGAATCTGCTTCATCGAACTTGGGGAGGATTCGGAAACTTTGAAGATGGAGTGTAGCTGTAAAGGCGAACTAGCCTTAGCTCATCAATCATGTGCTGTAAAATGGTTTAGCATAAAAGGCAACAAGATTTGTGATGTCTGTAATGAAGAGGTTCGGAACTTACCTGTCACTCTTTTGCGGATTCAAAGTACTATTCGTAGAGGAAATGGATCCCCAGCTGACTCTGTCCGATACAGGTATGCTCATGGCCGTTCCTTTCATTTCTTTTTTTAAAATATATATCTTTTGAATTAAAGTTAACTTCATTCAGTGCCTACACCTTTCTGTTAACTTTGTTCACTACTTTGCAACAGCCACTAGGAATTACTATTATATGTCTCGAGTTTTAATACAATTTAATGATGAGCGACATTTCTTCGTTGAATGAACTTTATAGTTCTCTAGTATTTCTTATGAGGAAATAGCTCAAGTTTAATCGCATGGTGACTATCGAACGAAGAAATGTTCAATTCAAATTATATGGTATTTTACTTGACGTGTGCAAACTGCTTACAGGGTTTGGCAGGACGTTCCTGTTCTTGTCCTTGTCAGCATGCTTGCCTACTTTTGTTTTCTGGAGCAGCTTTTGGTGAGTAAAAGACTAATGCAGTAATGTCATCCTACTCCAGAAAAGGATCTTAAATAATGCTTGTTTATAGGTTACCAGAATGGGATCCGGCGCGATCGCTATATCTCTGCCCTTTTCATGCATCTTGGGTCTCCTTGCATCCATGACAGCAACAACTATGGGTACATGAACTAAACAAACACCCTCCGTTTCAGAAACTACTTTCGATTTCAGTTTAACAGTGTCGGTGTTTCACTTTTTTCTTCTATTTGCTGGTATACATTATACAGTAATATAACATATAAACAAACATGCTTTATTTGTTTAGTGCAAAGGCGATATGCTTGGGTTTATGCTGTCAGTCAGTTTGCCTTGGTGGTTCTGTTTGCTCATGTGTTCTACTCACTGGTAAGTTATGCTTCAGGTCAAATAAACAAAATACTTTAGGTAGAGAATACATACACAATCACTAAAACTTGGCCTCAACGGACAAGTAAGCACTACAACTTTGAGAGTGCACATCTAGACACCTCAACTTGGTCTGAACTGACAACTAAACAATCCAACTCGTCTTCACTGTGTCTCGTGGACACCAGACACTGACCTGACACATGAAGAAGCGTTGATGTGCATTACTCAAAGCACGAGTGCTTCCTTGCCAGTTGAGGCCATTAAGTGTCTGTTTATGTATTATGTATTATGCCATCATTTCACCTGACCACTCGGAAAGGAAAAAAAGAAGAAGATTTTCTGAATTTCCTGAATTGCCTCGGGCTCTGCCTAATACTAAAAACTCTCTCATCTTATGCTCGGGATTGTAGCTTCGAGTGCAGGCAGTTCTAGCTGTTCTTCTTGCCACCTTTGCGGGTTTTGGAGGTGTAATGTGTGGGACTTCTTTTCTTCTTGAGCTTCTGAAATGGAGGAGTAGATGGAATTATTGGTCAAATGAGCCACATGATTCTCAAGAAGGGGCACAGCCAAATCAATCATCAGAAGTTACTCCTATGCCTCAGGTAGAAAGTCAAACTCGTCGAGCTGAAGCTGGTACTTCTGGAGTTGTCAATGGAAGTTGATACAGGACAAACATAATCTCTTTATATCAAGAAACCAAAGGAAAACACTAGTTTCTGTCTCTTGTAAGCAAAATTATTGTAGTGTATAGCTAGTCCTTGCAAGTCACAACTGTACAGTTTTGAGTTTATATCAAAGCTCTCGTTCAAACTTCAGAATTCTAAACATGAACACGAGACTTGAAATGAATTCAACTGTAGGTTGTAGG-----T-T-----C---AGGAATGGCGTTGCACGCAAAAGACGAGTGGTTCATTTTTCCAGTAGATGGGCAGTGCATGAAAGGAAACTGAAATAATGTAAATACCATAACGTTACAAGGATCTCTTCTCCTGTTATCAAAAAATCAGATC</genome_strand>
        <mrna_strand>CAGTACATCACTACTACTATATTGTTTGTTACACCACATTACTTTCTTGTCTCTGTTTTTTTCTCTCAAAGCTTGTAACTTTTGTTCATGGGTATTTTTCTTTACTTTCAGTGATTCAATACCCAATATTTTCTTTAGGGTTTTAGTTTCTTTTTCTATAAACCCATTGTTTCAATTAAAATGGAGACTAGTGACCAGAGGTCTTTAGCTGAAGAGGATGGAAAAAACTGTACAAACAATCTTAATTCCAGAGTTGATCCTCCTCCTCTTCTTGTTGAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGTGAATCAAGTGAAATTGTAGAGGAACTACAACTCTGCGAACTGCAGACGAAACAACTACCTCTGGAAGTACCTGAAAGAACCATTGATGGACAAACAGAAGATTTTGTTAGGATAGACATGTCCACATCACCAGTTCAAACTCCCAAGAGAGTGATTTTCTCGCCATCGCCCAGTCCTAACCATGTCAGACTAAACGAATCTCCTAGTCCCTCATTACCGTGGGCAAAATCATCCATTAAATCTCTCCTCCCTAAAATAAGTTTCAAATTACGAAATAAGACAAGTGATATTGAAAAAGCTGCAATGTTAGCTCTTGGAGTCTCTCCTTTGCCTCAGGACAAACCTTCAATTTTGAGGACTCTATCCATTAAAAGAATTTTCAATTCAAAGATGAACAGAACTTCATCATTGCCTATAACTCCAATTGAACACTCTAATCCAGAATCAACGCATGGTGACTACAGAGATGCTACATTTTATTCAGTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGCAGGAGTGCATCCCATACTTCGCTCACATTCAGTGCCAACACTGATCAAAGATGAAAGCCTAAAACAGATGGATTGCGTAGGGAATGTCTATCGTGTAGTCCCCTCAACTCCTCTCGTGCCAAGACATGATGATACATCATCAAATGCAACTCAAACTATTGGCGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTATGGTTCAGTTGAAAATGCTAATTTTGGTGGAGACATCACTCAAGAAGAGGCTGTCTGCAGAATCTGCTTCATCGAACTTGGGGAGGATTCGGAAACTTTGAAGATGGAGTGTAGCTGTAAAGGCGAACTAGCCTTAGCTCATCAATCATGTGCTGTAAAATGGTTTAGCATAAAAGGCAACAAGATTTGTGATGTCTGTAATGAAGAGGTTCGGAACTTACCTGTCACTCTTTTGCGGATTCAAAGTACTATTCGTAGAGGAAATGGATCCCCAGCTGACTCTGTCCGATACAG...............................................................................................................................................................................................................................................................................................................................GGTTTGGCAGGACGTTCCTGGTCTTGTCCTTGTCAGCATGCTTGCCTACTTTTGTTTTCTGGAGCATCTTTTG......................................................................GTTACCAGAATGGGATCCGGCGCGATTGCTATATCTCTGCCCTTTTCATGCATCTTGGGTCTCCTTGCATCCATGACAGCAACAACTATGG..................................................................................................................................................TGCAAAGGCGATATGCTTGGGTTTATGCTGTCAGTCAGTTTGCCTTGGTGGTTCTGTTTGCTCATGTGTTCTACTCACTG.............................................................................................................................................................................................................................................................................................................................................................................................................................CTTCGAGTGCAGGCAGTTCTAGCTGTTCTTCTTGCCACCTTTGCGGGTTTTGGAGGTGTAATGTGTGGGACTTCTTTTCTTCTTGAGCTTCTGAAATGGAGGAGTAGATGGAATTATTGGTCAAATGAGCCACATGATTCTCAAGAAGGGGCACAGCCAAATCAATCATCAGAAGTTACTCCTACGCCTCAGGTAGAAGGTCAAACTCGTCGAGCTGAAGCAGGTACTTCTGGAGTTGTCAATGGAAGTTGATACAGGACAAACATAATCTCTTTATATCAAGAAACCAAAGAAAAACACTAGTTTCTGTCTCTTGTAAGCAAAATTATTGTAGTGTATAGCTAGTCCTTGCAAATCACAACTGTACAGTTTTGAGTTTATATCAAAGCTCTCGTTCTAACTTCAGAATTCTAAACATGAACACGAGACTTGAAATGAATTCCACTGTAGGTTGTAGGTTCTTTATCAGGGCGTAAGGAATAGTGTTGCACGCAAAAGACGAGTGGTTCATTTTTCCAGTAGATGGGCAGTGCATGAAAGGAAACTGAAATAATGTAAATACCATAACTTTACAAGGATCTCTTCTCCTGTTATAGAAGAATTAGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M4034" ref_strand="+" ref_description="SGN-M4034 cSTB-1-N10 [est_clones]">
      <seq>aaataggttgcttagtgggtcatgctaatttctgacggactgcaacttttgtggagaaatatagttggaagttgtattatacaccctccgttgcaatttgcttgtcttacttttctttttagtccgtttaaaaaagaatgtctctttccctttttggcaactgttaaattcaaattttctacatgacatgttaaagaccacaacattaaaggatattttggtacattctgcatatttttagtttaagaccacaagattaaaaaatattcattactttcttaaactccgtgccaaatcaaaaccaaaaaaacaaattgaaatagaggaagtagaatctgatttatattccaaagaatcattactcagaatctggtaactataggaaattgaatttaataacctatatttggacacaaaatattctgtaaatctattcttacacatcactgcatttacgacttgaaccttatgttcactcacctgggataactaacctacacctttcttagtgttatggttcagttgaaaatgctaattttggtggagacatcactcaagaagaggctgtctgcagaatctgcttcatcgaacttggggagggttcggaaactttgaagatggagtgtagctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="+" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="66259" stop="67498"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66559" g_stop="67198" g_length="640"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="632" r_length="632" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="+" ref_id="SGN-M4034" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.013" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M4034" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66559" e_stop="67198"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTAGGTTGCTTAGTGGGTCATGCTAATTTCTGAC-GACCGCAACTTTTGTGGAGAAATATAATTAGAAGTTGTATTACACTCCCTCCGTTGCAATTTGCTTGTCTTACTTTTCTTTTTAGTCCGTTTCAAATAGAATGTCTCTTTTCCTTTTTGGCAACTCTTAAATATCAAATTTTTTACATATGACATGTTTAAGACCACAACATTAAATGACAATTTGGAATATTCTGCATATTTTTAGTTTAAGACCACAAGATTAAAAAATATTCGTTGCTTTCTTAAACTCCGTGCCATGTCAAGACCATAGAAAGAAATTGAAACAGAGGAAGTGGAATCTGATTTATATTCCAAAGAATCATCGCTCAGAATCTGGTAACTATGGGAAATCG-ATTTAATAACCGATATTTGGACACAGAATATTCTGTTAATCTATTCTTATGTAGATACGCATCCTGCATTCATGACTTGAACCTTATGTTCACTCACCTGGGATAACTAACCTACACCTTTCTTAGTGTTATGGTTCAGTTGAAAATGCTAATTTTGGTGGAGACATCACTCAAGAAGAGGCTGTCTGCAGAATCTGCTTCATCGAACTTGGGGAGGATTCGGAAACTTTGAAGATGGAGTGTAGCTGT</genome_strand>
        <mrna_strand>AAATAGGTTGCTTAGTGGGTCATGCTAATTTCTGACGGACTGCAACTTTTGTGGAGAAATATAGTTGGAAGTTGTATTATACACCCTCCGTTGCAATTTGCTTGTCTTACTTTTCTTTTTAGTCCGTTTAAAAAAGAATGTCTCTTTCCCTTTTTGGCAACTGTTAAAT-TCAAATTTTCTAC--ATGACATGTTAAAGACCACAACATTAAAGGATATTTTGGTACATTCTGCATATTTTTAGTTTAAGACCACAAGATTAAAAAATATTCATTACTTTCTTAAACTCCGTGCCAAATCAAAACCAAAAAAACAAATTGAAATAGAGGAAGTAGAATCTGATTTATATTCCAAAGAATCATTACTCAGAATCTGGTAACTATAGGAAATTGAATTTAATAACCTATATTTGGACACAAAATATTCTGTAAATCTATTCTTA--CACAT---CA--CTGCATTTACGACTTGAACCTTATGTTCACTCACCTGGGATAACTAACCTACACCTTTCTTAGTGTTATGGTTCAGTTGAAAATGCTAATTTTGGTGGAGACATCACTCAAGAAGAGGCTGTCTGCAGAATCTGCTTCATCGAACTTGGGGAGGGTTCGGAAACTTTGAAGATGGAGTGTAGCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M8146" ref_strand="+" ref_description="SGN-M8146 C2_At4g01310 [cosii_markers]">
      <seq>acaaagaacatcttatccaattacccttttatttttcacacacagagagaaaaagctcagagaaaatggcggcttctcctcttcttctacactccacggcctcctctttctacaatgctgagtttccggcgtactccgttcgattgccggtcggaaataccaaggtccggtcgtccaataaattgacggtgaaagcttcagcaacagtactagtggataaaagtgaagctgaaaaagttaatcgtctgaaaacaaattacctcgaaaagattgtgccgttgttgaaggaagaattcagttacaccaatattcttcaggttccgaaggtcgaaaagattgtggtaaattgtggtataggagatgctgcacaaaattccaagggtttggatgcagcaatgaatgatttggccttaattacagggcaaaggcctgtgaagactagggctaagaatgctattgctactttcaaaattagagaaggtcaaccgcttggaattgctgttacacttcgagggaatgtaatgtattcgttccttgaccggttaattaatttggggcttcctcgaacgagggactttcaaggcgtaaaccccaatagctttgatggtcatggaaattatagcattggctttcgtgaacagagtgtcttcccagagttaagttatgatgctcttggtaagccaagagggatggatgtttgcataacaacaacagctgagacagataaagaggcacacagattgttggctctcatgggtatgccatttagagaaggttctggtggacagacaacttttacgaaaaagaaaaagcttagagctcaccattttgactcgaaggcgaagcaaaggtctaggagatgaggtggatccaatctccagggataatgagttgatttgttgttttttaactgttctgtggtttatcagttgtttttggcgtacaatttgaatagaaaaatctgtaattgcacttttaccatctggctggtgatgtctcgaatatatgttatttacgttttcttcctctaaaaaaataaaaataagaattgtttttatctctagttaagtttttactattcatgaatcttgattactgtaatttgtatgttattaaatatttcctacccgctccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="-" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="138499" stop="136338"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="138199" g_stop="137883" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="317" r_length="317" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="137882" i_stop="137455" i_length="428">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="137454" g_stop="136638" g_length="817"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="1134" r_length="817" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1135" polyA_stop="1144"/>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="-" ref_id="SGN-M8146" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1134</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M8146" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="138199" e_stop="137883"/>
          <exon e_start="137454" e_stop="136638"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAGAACATCTTATCCAATTACCCTTTTATTTTTCACACACAGAGAGAAAAAGCTCAGAGAAAATGGCGGCTTCTCCTCTTCTTCTACACTCCACGGCCTCCTCTTTCTACAATGCTGAGTTTCCGGCGTACTCCGTTCGATTGCCGGTCGGAAATACCAAGGTCCGGTCGTCCAATAAATTGACGGTGAAAGCTTCAGCAACAGTACTAGTGGATAAAAGTGAAGCTGAAAAAGTTAATCGTCTGAAAACAAATTACCTCGAAAAGATTGTGCCGTTGTTGAAGGAAGAATTCAGTTACACCAATATTCTTCAGGTAAACTTAGGAGTCGTTTGTCCATTGCATTTTTTTTCCAGAACAGATAAAAATTAGGGCTTGGGAAAGGGAAAATGGGGGAATTGAACAAATTTTTCAGTTTTAAAAAAAGCTTAGTGCAGGTTCAAACACAAATTCAATTTTCAATTATACTTTTCAAGTTAATTTCAATTTCAAAGCATATGTACTTCTTTAGCTTCAAATTTTACAACTTATATCTACAAATTTGAACTGTTTCTTGTTTGTTTGATTAAATGTTGAATTTTAGAGTTGAAATGCTGAGAAATTAGTTTGTTTGACACTATTATCATTTGAGGAGTGAGAAATCACAGTGAATATTAGTTGCATTGACCTATTGCTTCAAACTCTATTATTATTTTTTAGTTTTAATTTGATTTGATACGGAATGTGGAAAAACCGTGTTTTAGGTTCCGAAGGTCGAAAAGATTGTGGTAAATTGTGGTATAGGAGATGCTGCACAAAATTCCAAGGGTTTGGATGCAGCAATGAATGATTTGGCCTTAATTACAGGGCAAAGGCCTGTGAAGACTAGGGCTAAGAATGCTATTGCTACTTTCAAAATTAGAGAAGGTCAACCGCTTGGAATTGCTGTTACACTTCGAGGGAATGTAATGTATTCGTTCCTTGACCGGTTAATTAATTTGGGGCTTCCTCGAACGAGGGACTTTCAAGGCGTAAACCCCAATAGCTTTGATGGTCATGGAAATTATAGCATTGGCTTTCGTGAACAGAGTGTCTTCCCAGAGTTAAGTTATGATGCTCTTGGTAAGCCAAGAGGGATGGATGTTTGCATAACAACAACAGCTGAGACAGATAAAGAGGCACACAGATTGTTGGCTCTCATGGGTATGCCATTTAGAGAAGGTTCTGGTGGACAGACAACTTTTACGAAAAAGAAAAAGCTTAGAGCTCACCATTTTGACTCGAAGGCGAAGCAAAGGTCTAGGAGATGAGGTGGATCCAATCTCCAGGGATAATGAGTTGATTTGTTGTTTTTTAACTGTTCTGTGGTTTATCAGTTGTTTTTGGCGTACAATTTGAATAGAAAAATCTGTAATTGCACTTTTACCATCTGGCTGGTGATGTCTCGAATATATGTTATTTACGTTTTCTTCCTCTAAAAAAATAAAAATAAGAATTGTTTTTATCTCTAGTTAAGTTTTTACTATTCATGAATCTTGATTACTGTAATTTGTATGTTATTAAATATTTCCTACCCGCTCC</genome_strand>
        <mrna_strand>ACAAAGAACATCTTATCCAATTACCCTTTTATTTTTCACACACAGAGAGAAAAAGCTCAGAGAAAATGGCGGCTTCTCCTCTTCTTCTACACTCCACGGCCTCCTCTTTCTACAATGCTGAGTTTCCGGCGTACTCCGTTCGATTGCCGGTCGGAAATACCAAGGTCCGGTCGTCCAATAAATTGACGGTGAAAGCTTCAGCAACAGTACTAGTGGATAAAAGTGAAGCTGAAAAAGTTAATCGTCTGAAAACAAATTACCTCGAAAAGATTGTGCCGTTGTTGAAGGAAGAATTCAGTTACACCAATATTCTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCGAAGGTCGAAAAGATTGTGGTAAATTGTGGTATAGGAGATGCTGCACAAAATTCCAAGGGTTTGGATGCAGCAATGAATGATTTGGCCTTAATTACAGGGCAAAGGCCTGTGAAGACTAGGGCTAAGAATGCTATTGCTACTTTCAAAATTAGAGAAGGTCAACCGCTTGGAATTGCTGTTACACTTCGAGGGAATGTAATGTATTCGTTCCTTGACCGGTTAATTAATTTGGGGCTTCCTCGAACGAGGGACTTTCAAGGCGTAAACCCCAATAGCTTTGATGGTCATGGAAATTATAGCATTGGCTTTCGTGAACAGAGTGTCTTCCCAGAGTTAAGTTATGATGCTCTTGGTAAGCCAAGAGGGATGGATGTTTGCATAACAACAACAGCTGAGACAGATAAAGAGGCACACAGATTGTTGGCTCTCATGGGTATGCCATTTAGAGAAGGTTCTGGTGGACAGACAACTTTTACGAAAAAGAAAAAGCTTAGAGCTCACCATTTTGACTCGAAGGCGAAGCAAAGGTCTAGGAGATGAGGTGGATCCAATCTCCAGGGATAATGAGTTGATTTGTTGTTTTTTAACTGTTCTGTGGTTTATCAGTTGTTTTTGGCGTACAATTTGAATAGAAAAATCTGTAATTGCACTTTTACCATCTGGCTGGTGATGTCTCGAATATATGTTATTTACGTTTTCTTCCTCTAAAAAAATAAAAATAAGAATTGTTTTTATCTCTAGTTAAGTTTTTACTATTCATGAATCTTGATTACTGTAATTTGTATGTTATTAAATATTTCCTACCCGCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M8146-2" ref_strand="+" ref_description="SGN-M8146-2 C2_At4g01310-2 [cosii_markers]">
      <seq>gaggcacacacacacagaaaaagctcagtgaaatggcggcatcttctcctcttcttctacactccacggcctcctctttctacaatgctgagtttccggcgtactccgttcgattgccggtcggaaaccctaagctccggtcgtccaataaattgacggtgaaagcttcagcaatagtactggtggataaaagtgaagctgaaaaagttaatcgtctgaaaacaaattacctcgaaaagattgttccattgttgaaagaagaattcagttacaccaatattcttcaggttccgaaggtcgaaaagattgtggtaaattgtggtataggagatgctgcacaaaattccaagggtttggatgcagcagtgaatgatttggcattaatcacagggcaaaggcctgtgaagactaggtctaagaatgctattgctactttcaaaattagagaaggtcaaccgcttggaattgctgttacacttcgagggaatgtgatgtattcgttccttgaccggttaattaatttggggcttcctcgaacgagggactttcaaggcgtaaaccccaatagctttgatggtcatggaaattatagcattggctttcgtgaacagagtgtcttcccagagctaagttatgatgctcttggtaagccaagagggatggatgtttgcataacaacaacagctgagacagataaagaggcacacagattgttggctctcatgggtatgccattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="-" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="138432" stop="136705"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="138154" g_stop="137883" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="287" r_length="274" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="137882" i_stop="137455" i_length="428">
            <donor d_prob="0.978" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="137454" g_stop="137005" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="737" r_length="450" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="-" ref_id="SGN-M8146-2" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M8146-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="138154" e_stop="137883"/>
          <exon e_start="137454" e_stop="137005"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAAAAAGCTCAGAGAAA-AT-GGCGGCTTCTCCTCTTCTTCTACACTCCACGGCCTCCTCTTTCTACAATGCTGAGTTTCCGGCGTACTCCGTTCGATTGCCGGTCGGAAATACCAAGGTCCGGTCGTCCAATAAATTGACGGTGAAAGCTTCAGCAACAGTACTAGTGGATAAAAGTGAAGCTGAAAAAGTTAATCGTCTGAAAACAAATTACCTCGAAAAGATTGTGCCGTTGTTGAAGGAAGAATTCAGTTACACCAATATTCTTCAGGTAAACTTAGGAGTCGTTTGTCCATTGCATTTTTTTTCCAGAACAGATAAAAATTAGGGCTTGGGAAAGGGAAAATGGGGGAATTGAACAAATTTTTCAGTTTTAAAAAAAGCTTAGTGCAGGTTCAAACACAAATTCAATTTTCAATTATACTTTTCAAGTTAATTTCAATTTCAAAGCATATGTACTTCTTTAGCTTCAAATTTTACAACTTATATCTACAAATTTGAACTGTTTCTTGTTTGTTTGATTAAATGTTGAATTTTAGAGTTGAAATGCTGAGAAATTAGTTTGTTTGACACTATTATCATTTGAGGAGTGAGAAATCACAGTGAATATTAGTTGCATTGACCTATTGCTTCAAACTCTATTATTATTTTTTAGTTTTAATTTGATTTGATACGGAATGTGGAAAAACCGTGTTTTAGGTTCCGAAGGTCGAAAAGATTGTGGTAAATTGTGGTATAGGAGATGCTGCACAAAATTCCAAGGGTTTGGATGCAGCAATGAATGATTTGGCCTTAATTACAGGGCAAAGGCCTGTGAAGACTAGGGCTAAGAATGCTATTGCTACTTTCAAAATTAGAGAAGGTCAACCGCTTGGAATTGCTGTTACACTTCGAGGGAATGTAATGTATTCGTTCCTTGACCGGTTAATTAATTTGGGGCTTCCTCGAACGAGGGACTTTCAAGGCGTAAACCCCAATAGCTTTGATGGTCATGGAAATTATAGCATTGGCTTTCGTGAACAGAGTGTCTTCCCAGAGTTAAGTTATGATGCTCTTGGTAAGCCAAGAGGGATGGATGTTTGCATAACAACAACAGCTGAGACAGATAAAGAGGCACACAGATTGTTGGCTCTCATGGGTATGCCATTT</genome_strand>
        <mrna_strand>ACAGAAAAAGCTCAGTGAAATGGCGGCATCTTCTCCTCTTCTTCTACACTCCACGGCCTCCTCTTTCTACAATGCTGAGTTTCCGGCGTACTCCGTTCGATTGCCGGTCGGAAACCCTAAGCTCCGGTCGTCCAATAAATTGACGGTGAAAGCTTCAGCAATAGTACTGGTGGATAAAAGTGAAGCTGAAAAAGTTAATCGTCTGAAAACAAATTACCTCGAAAAGATTGTTCCATTGTTGAAAGAAGAATTCAGTTACACCAATATTCTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCGAAGGTCGAAAAGATTGTGGTAAATTGTGGTATAGGAGATGCTGCACAAAATTCCAAGGGTTTGGATGCAGCAGTGAATGATTTGGCATTAATCACAGGGCAAAGGCCTGTGAAGACTAGGTCTAAGAATGCTATTGCTACTTTCAAAATTAGAGAAGGTCAACCGCTTGGAATTGCTGTTACACTTCGAGGGAATGTGATGTATTCGTTCCTTGACCGGTTAATTAATTTGGGGCTTCCTCGAACGAGGGACTTTCAAGGCGTAAACCCCAATAGCTTTGATGGTCATGGAAATTATAGCATTGGCTTTCGTGAACAGAGTGTCTTCCCAGAGCTAAGTTATGATGCTCTTGGTAAGCCAAGAGGGATGGATGTTTGCATAACAACAACAGCTGAGACAGATAAAGAGGCACACAGATTGTTGGCTCTCATGGGTATGCCATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M1585" ref_strand="+" ref_description="SGN-M1585 T0758 [cos_markers]">
      <seq>agaaaatggcggcttctcctcttcttctacactccacggcctcctctttctacaatgctgagtttccggcgtactccgttcgattgccggtcggaaataccaaggtccggtcgtccaataaattgacggtgaaagcttcagcaacagtactagtggataaaagtgaagctgaaaaagttaatcgtctgaaaacaaattacctcgaaaagattgtgccgttgttgaaggaagaattcagttacaccaatattcttcaggttccgaaggtcgaaaagattgtggtaaattgtggtataggagatgctgcacaaaattccaagggtttggatgcagcaatgaatgatttggccttaattacagggcaaaggcctgtgaagactagggctaagaatgctattgctactttcaaaattagagaaggtcaaccgcttggaattgctgttacacttcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="-" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="138439" stop="136961"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="138139" g_stop="137883" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="257" r_length="257" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="137882" i_stop="137455" i_length="428">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="137454" g_stop="137261" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="451" r_length="194" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="-" ref_id="SGN-M1585" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M1585" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="138139" e_stop="137883"/>
          <exon e_start="137454" e_stop="137261"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAATGGCGGCTTCTCCTCTTCTTCTACACTCCACGGCCTCCTCTTTCTACAATGCTGAGTTTCCGGCGTACTCCGTTCGATTGCCGGTCGGAAATACCAAGGTCCGGTCGTCCAATAAATTGACGGTGAAAGCTTCAGCAACAGTACTAGTGGATAAAAGTGAAGCTGAAAAAGTTAATCGTCTGAAAACAAATTACCTCGAAAAGATTGTGCCGTTGTTGAAGGAAGAATTCAGTTACACCAATATTCTTCAGGTAAACTTAGGAGTCGTTTGTCCATTGCATTTTTTTTCCAGAACAGATAAAAATTAGGGCTTGGGAAAGGGAAAATGGGGGAATTGAACAAATTTTTCAGTTTTAAAAAAAGCTTAGTGCAGGTTCAAACACAAATTCAATTTTCAATTATACTTTTCAAGTTAATTTCAATTTCAAAGCATATGTACTTCTTTAGCTTCAAATTTTACAACTTATATCTACAAATTTGAACTGTTTCTTGTTTGTTTGATTAAATGTTGAATTTTAGAGTTGAAATGCTGAGAAATTAGTTTGTTTGACACTATTATCATTTGAGGAGTGAGAAATCACAGTGAATATTAGTTGCATTGACCTATTGCTTCAAACTCTATTATTATTTTTTAGTTTTAATTTGATTTGATACGGAATGTGGAAAAACCGTGTTTTAGGTTCCGAAGGTCGAAAAGATTGTGGTAAATTGTGGTATAGGAGATGCTGCACAAAATTCCAAGGGTTTGGATGCAGCAATGAATGATTTGGCCTTAATTACAGGGCAAAGGCCTGTGAAGACTAGGGCTAAGAATGCTATTGCTACTTTCAAAATTAGAGAAGGTCAACCGCTTGGAATTGCTGTTACACTTCG</genome_strand>
        <mrna_strand>AGAAAATGGCGGCTTCTCCTCTTCTTCTACACTCCACGGCCTCCTCTTTCTACAATGCTGAGTTTCCGGCGTACTCCGTTCGATTGCCGGTCGGAAATACCAAGGTCCGGTCGTCCAATAAATTGACGGTGAAAGCTTCAGCAACAGTACTAGTGGATAAAAGTGAAGCTGAAAAAGTTAATCGTCTGAAAACAAATTACCTCGAAAAGATTGTGCCGTTGTTGAAGGAAGAATTCAGTTACACCAATATTCTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCGAAGGTCGAAAAGATTGTGGTAAATTGTGGTATAGGAGATGCTGCACAAAATTCCAAGGGTTTGGATGCAGCAATGAATGATTTGGCCTTAATTACAGGGCAAAGGCCTGTGAAGACTAGGGCTAAGAATGCTATTGCTACTTTCAAAATTAGAGAAGGTCAACCGCTTGGAATTGCTGTTACACTTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>5</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="63111" PGL_stop="69160"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="63111" e_stop="63392"/>
            <exon e_start="64408" e_stop="64899"/>
            <exon e_start="65899" e_stop="66070"/>
            <exon e_start="67076" e_stop="67374"/>
            <exon e_start="67694" e_stop="67766"/>
            <exon e_start="67837" e_stop="67927"/>
            <exon e_start="68074" e_stop="68153"/>
            <exon e_start="68567" e_stop="69160"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="0.849" e_score="0.998"/>
          <exon-intron don_prob="0.998" acc_prob="0.363" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.631" acc_prob="0.970" e_score="0.973"/>
          <exon-intron don_prob="0.963" acc_prob="0.764" e_score="0.989"/>
          <exon-intron don_prob="0.969" acc_prob="0.849" e_score="1.000"/>
          <exon-only e_score="0.929"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="63111" e_stop="63392" e_length="282"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="0.989">
            <gDNA_intron_boundary i_start="63393" i_stop="64407" i_length="1015"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="64408" e_stop="64899" e_length="492"/>
          </exon>
          <intron i_serial="2" don_prob="0.962" acc_prob="0.849">
            <gDNA_intron_boundary i_start="64900" i_stop="65898" i_length="999"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="65899" e_stop="66070" e_length="172"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.363">
            <gDNA_intron_boundary i_start="66071" i_stop="67075" i_length="1005"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="67076" e_stop="67374" e_length="299"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="67375" i_stop="67693" i_length="319"/>
          </intron>
          <exon e_serial="5" e_score="0.973">
            <gDNA_exon_boundary e_start="67694" e_stop="67766" e_length="73"/>
          </exon>
          <intron i_serial="5" don_prob="0.631" acc_prob="0.970">
            <gDNA_intron_boundary i_start="67767" i_stop="67836" i_length="70"/>
          </intron>
          <exon e_serial="6" e_score="0.989">
            <gDNA_exon_boundary e_start="67837" e_stop="67927" e_length="91"/>
          </exon>
          <intron i_serial="6" don_prob="0.963" acc_prob="0.764">
            <gDNA_intron_boundary i_start="67928" i_stop="68073" i_length="146"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="68074" e_stop="68153" e_length="80"/>
          </exon>
          <intron i_serial="7" don_prob="0.969" acc_prob="0.849">
            <gDNA_intron_boundary i_start="68154" i_stop="68566" i_length="413"/>
          </intron>
          <exon e_serial="8" e_score="0.929">
            <gDNA_exon_boundary e_start="68567" e_stop="69160" e_length="594"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63111" stop="63392"/>
              <exon start="64408" stop="64899"/>
              <exon start="65899" stop="66070"/>
              <exon start="67076" stop="67374"/>
              <exon start="67694" stop="67766"/>
              <exon start="67837" stop="67927"/>
              <exon start="68074" stop="68153"/>
              <exon start="68567" stop="69160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M9139" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGTACATCACTACTACTATATTGTTTGTTACACCACATTACTTTCTTGTCTCTGTTTTTTTCTCTCAAAGCTTGTAACTTTTGTTCATGGGTATTTTTCTTTACTTTCAGTGATTCAATACCCAATATTTTCTTTAGGGTTTTAGTTTCTTTTTCTATAAACCCATTGTTTCAATTAAAATGGAGACTAGTGACCAGAGGTCTTTAGCTGAAGAGGATGGAAAAAACTGTACAAACAATCTTAATTCCAGAGTTGATCCTCCTCCTCTTCTTGTTGAAAAG : GTTGGTGAATCAAGTGAAATTGTAGAGGAACTACAACTCTGCGAACTGCAGACGAAACAACTACCTCTGGAAGTACCTGAAAGAACCATTGATGGACAAACAGAAGATTTTGTTAGGATAGACATGTCCACATCACCAGTTCAAACTCCCAAGAGAGTGATTTTCTCGCCATCGCCCAGTCCTAACCATGTCAGACTAAACGAATCTCCTAGTCCCTCATTACCGTGGGCAAAATCATCCATTAAATCTCTCCTCCCTAAAATAAGTTTCAAATTACGAAATAAGACGAGTGATATTGAAAAAGCTGCAATGTTAGCTCTTGGAGTCTCTCCTTTGCCTCAGGACAAACCTTCAATTTTGAGGACTCTATCCATTAAAAGAATTTTCAATTCAAAGATGAACAGAACTTCATCATTGCCTATAACTCCAATTGAACACTCTAATCCAGAATCAACGCATGGTGACTACAGAGATGCTACATTTTATTCAGTT : AAAGCAGGAGTGCATCCCATACTTCGCTCACATTCAGTGCCAACACTGATCAAAGATGAAAGCCTAAAACAGATGGATTGCGTAGGGAATGTCTATCGTGTAGTCCCCTCAACTCCTCTCGTGCCAAGACATGATGATACATCATCAAATGCAACTCAAACTATTGGCGCAG : TGTTATGGTTCAGTTGAAAATGCTAATTTTGGTGGAGACATCACTCAAGAAGAGGCTGTCTGCAGAATCTGCTTCATCGAACTTGGGGAGGATTCGGAAACTTTGAAGATGGAGTGTAGCTGTAAAGGCGAACTAGCCTTAGCTCATCAATCATGTGCTGTAAAATGGTTTAGCATAAAAGGCAACAAGATTTGTGATGTCTGTAATGAAGAGGTTCGGAACTTACCTGTCACTCTTTTGCGGATTCAAAGTACTATTCGTAGAGGAAATGGATCCCCAGCTGACTCTGTCCGATACAG : GGTTTGGCAGGACGTTCCTGTTCTTGTCCTTGTCAGCATGCTTGCCTACTTTTGTTTTCTGGAGCAGCTTTTG : GTTACCAGAATGGGATCCGGCGCGATCGCTATATCTCTGCCCTTTTCATGCATCTTGGGTCTCCTTGCATCCATGACAGCAACAACTATGG : TGCAAAGGCGATATGCTTGGGTTTATGCTGTCAGTCAGTTTGCCTTGGTGGTTCTGTTTGCTCATGTGTTCTACTCACTG : CTTCGAGTGCAGGCAGTTCTAGCTGTTCTTCTTGCCACCTTTGCGGGTTTTGGAGGTGTAATGTGTGGGACTTCTTTTCTTCTTGAGCTTCTGAAATGGAGGAGTAGATGGAATTATTGGTCAAATGAGCCACATGATTCTCAAGAAGGGGCACAGCCAAATCAATCATCAGAAGTTACTCCTATGCCTCAGGTAGAAAGTCAAACTCGTCGAGCTGAAGCTGGTACTTCTGGAGTTGTCAATGGAAGTTGATACAGGACAAACATAATCTCTTTATATCAAGAAACCAAAGGAAAACACTAGTTTCTGTCTCTTGTAAGCAAAATTATTGTAGTGTATAGCTAGTCCTTGCAAGTCACAACTGTACAGTTTTGAGTTTATATCAAAGCTCTCGTTCAAACTTCAGAATTCTAAACATGAACACGAGACTTGAAATGAATTCAACTGTAGGTTGTAGGTTCAGGAATGGCGTTGCACGCAAAAGACGAGTGGTTCATTTTTCCAGTAGATGGGCAGTGCATGAAAGGAAACTGAAATAATGTAAATACCATAACGTTACAAGGATCTCTTCTCCTGTTATCAAAAAATCAGATC</gDNA_template>
            <first_frame> Q  Y  I  T  T  T  I  L  F  V  T  P  H  Y  F  L  V  S  V  F  F  S  Q  S  L  *  L  L  F  M  G  I  F  L  Y  F  Q  *  F  N  T  Q  Y  F  L  *  G  F  S  F  F  F  Y  K  P  I  V  S  I  K  M  E  T  S  D  Q  R  S  L  A  E  E  D  G  K  N  C  T  N  N  L  N  S  R  V  D  P  P  P  L  L  V  E  K  :  V  G  E  S  S  E  I  V  E  E  L  Q  L  C  E  L  Q  T  K  Q  L  P  L  E  V  P  E  R  T  I  D  G  Q  T  E  D  F  V  R  I  D  M  S  T  S  P  V  Q  T  P  K  R  V  I  F  S  P  S  P  S  P  N  H  V  R  L  N  E  S  P  S  P  S  L  P  W  A  K  S  S  I  K  S  L  L  P  K  I  S  F  K  L  R  N  K  T  S  D  I  E  K  A  A  M  L  A  L  G  V  S  P  L  P  Q  D  K  P  S  I  L  R  T  L  S  I  K  R  I  F  N  S  K  M  N  R  T  S  S  L  P  I  T  P  I  E  H  S  N  P  E  S  T  H  G  D  Y  R  D  A  T  F  Y  S  V  :  K  A  G  V  H  P  I  L  R  S  H  S  V  P  T  L  I  K  D  E  S  L  K  Q  M  D  C  V  G  N  V  Y  R  V  V  P  S  T  P  L  V  P  R  H  D  D  T  S  S  N  A  T  Q  T  I  G  A   : V  L  W  F  S  *  K  C  *  F  W  W  R  H  H  S  R  R  G  C  L  Q  N  L  L  H  R  T  W  G  G  F  G  N  F  E  D  G  V  *  L  *  R  R  T  S  L  S  S  S  I  M  C  C  K  M  V  *  H  K  R  Q  Q  D  L  *  C  L  *  *  R  G  S  E  L  T  C  H  S  F  A  D  S  K  Y  Y  S  *  R  K  W  I  P  S  *  L  C  P  I  Q  :  G  L  A  G  R  S  C  S  C  P  C  Q  H  A  C  L  L  L  F  S  G  A  A  F   : G  Y  Q  N  G  I  R  R  D  R  Y  I  S  A  L  F  M  H  L  G  S  P  C  I  H  D  S  N  N  Y  G :   A  K  A  I  C  L  G  L  C  C  Q  S  V  C  L  G  G  S  V  C  S  C  V  L  L  T   : A  S  S  A  G  S  S  S  C  S  S  C  H  L  C  G  F  W  R  C  N  V  W  D  F  F  S  S  *  A  S  E  M  E  E  *  M  E  L  L  V  K  *  A  T  *  F  S  R  R  G  T  A  K  S  I  I  R  S  Y  S  Y  A  S  G  R  K  S  N  S  S  S  *  S  W  Y  F  W  S  C  Q  W  K  L  I  Q  D  K  H  N  L  F  I  S  R  N  Q  R  K  T  L  V  S  V  S  C  K  Q  N  Y  C  S  V  *  L  V  L  A  S  H  N  C  T  V  L  S  L  Y  Q  S  S  R  S  N  F  R  I  L  N  M  N  T  R  L  E  M  N  S  T  V  G  C  R  F  R  N  G  V  A  R  K  R  R  V  V  H  F  S  S  R  W  A  V  H  E  R  K  L  K  *  C  K  Y  H  N  V  T  R  I  S  S  P  V  I  K  K  S  D  </first_frame>
            <second_frame>  S  T  S  L  L  L  Y  C  L  L  H  H  I  T  F  L  S  L  F  F  S  L  K  A  C  N  F  C  S  W  V  F  F  F  T  F  S  D  S  I  P  N  I  F  F  R  V  L  V  S  F  S  I  N  P  L  F  Q  L  K  W  R  L  V  T  R  G  L  *  L  K  R  M  E  K  T  V  Q  T  I  L  I  P  E  L  I  L  L  L  F  L  L  K  R :   L  V  N  Q  V  K  L  *  R  N  Y  N  S  A  N  C  R  R  N  N  Y  L  W  K  Y  L  K  E  P  L  M  D  K  Q  K  I  L  L  G  *  T  C  P  H  H  Q  F  K  L  P  R  E  *  F  S  R  H  R  P  V  L  T  M  S  D  *  T  N  L  L  V  P  H  Y  R  G  Q  N  H  P  L  N  L  S  S  L  K  *  V  S  N  Y  E  I  R  R  V  I  L  K  K  L  Q  C  *  L  L  E  S  L  L  C  L  R  T  N  L  Q  F  *  G  L  Y  P  L  K  E  F  S  I  Q  R  *  T  E  L  H  H  C  L  *  L  Q  L  N  T  L  I  Q  N  Q  R  M  V  T  T  E  M  L  H  F  I  Q  L :   K  Q  E  C  I  P  Y  F  A  H  I  Q  C  Q  H  *  S  K  M  K  A  *  N  R  W  I  A  *  G  M  S  I  V  *  S  P  Q  L  L  S  C  Q  D  M  M  I  H  H  Q  M  Q  L  K  L  L  A  Q  :  C  Y  G  S  V  E  N  A  N  F  G  G  D  I  T  Q  E  E  A  V  C  R  I  C  F  I  E  L  G  E  D  S  E  T  L  K  M  E  C  S  C  K  G  E  L  A  L  A  H  Q  S  C  A  V  K  W  F  S  I  K  G  N  K  I  C  D  V  C  N  E  E  V  R  N  L  P  V  T  L  L  R  I  Q  S  T  I  R  R  G  N  G  S  P  A  D  S  V  R  Y  R :   V  W  Q  D  V  P  V  L  V  L  V  S  M  L  A  Y  F  C  F  L  E  Q  L  L  :  V  T  R  M  G  S  G  A  I  A  I  S  L  P  F  S  C  I  L  G  L  L  A  S  M  T  A  T  T  M   : V  Q  R  R  Y  A  W  V  Y  A  V  S  Q  F  A  L  V  V  L  F  A  H  V  F  Y  S  L  :  L  R  V  Q  A  V  L  A  V  L  L  A  T  F  A  G  F  G  G  V  M  C  G  T  S  F  L  L  E  L  L  K  W  R  S  R  W  N  Y  W  S  N  E  P  H  D  S  Q  E  G  A  Q  P  N  Q  S  S  E  V  T  P  M  P  Q  V  E  S  Q  T  R  R  A  E  A  G  T  S  G  V  V  N  G  S  *  Y  R  T  N  I  I  S  L  Y  Q  E  T  K  G  K  H  *  F  L  S  L  V  S  K  I  I  V  V  Y  S  *  S  L  Q  V  T  T  V  Q  F  *  V  Y  I  K  A  L  V  Q  T  S  E  F  *  T  *  T  R  D  L  K  *  I  Q  L  *  V  V  G  S  G  M  A  L  H  A  K  D  E  W  F  I  F  P  V  D  G  Q  C  M  K  G  N  *  N  N  V  N  T  I  T  L  Q  G  S  L  L  L  L  S  K  N  Q  I </second_frame>
            <third_frame>   V  H  H  Y  Y  Y  I  V  C  Y  T  T  L  L  S  C  L  C  F  F  L  S  K  L  V  T  F  V  H  G  Y  F  S  L  L  S  V  I  Q  Y  P  I  F  S  L  G  F  *  F  L  F  L  *  T  H  C  F  N  *  N  G  D  *  *  P  E  V  F  S  *  R  G  W  K  K  L  Y  K  Q  S  *  F  Q  S  *  S  S  S  S  S  C  *  K   : G  W  *  I  K  *  N  C  R  G  T  T  T  L  R  T  A  D  E  T  T  T  S  G  S  T  *  K  N  H  *  W  T  N  R  R  F  C  *  D  R  H  V  H  I  T  S  S  N  S  Q  E  S  D  F  L  A  I  A  Q  S  *  P  C  Q  T  K  R  I  S  *  S  L  I  T  V  G  K  I  I  H  *  I  S  P  P  *  N  K  F  Q  I  T  K  *  D  E  *  Y  *  K  S  C  N  V  S  S  W  S  L  S  F  A  S  G  Q  T  F  N  F  E  D  S  I  H  *  K  N  F  Q  F  K  D  E  Q  N  F  I  I  A  Y  N  S  N  *  T  L  *  S  R  I  N  A  W  *  L  Q  R  C  Y  I  L  F  S   : *  S  R  S  A  S  H  T  S  L  T  F  S  A  N  T  D  Q  R  *  K  P  K  T  D  G  L  R  R  E  C  L  S  C  S  P  L  N  S  S  R  A  K  T  *  *  Y  I  I  K  C  N  S  N  Y  W  R  S :   V  M  V  Q  L  K  M  L  I  L  V  E  T  S  L  K  K  R  L  S  A  E  S  A  S  S  N  L  G  R  I  R  K  L  *  R  W  S  V  A  V  K  A  N  *  P  *  L  I  N  H  V  L  *  N  G  L  A  *  K  A  T  R  F  V  M  S  V  M  K  R  F  G  T  Y  L  S  L  F  C  G  F  K  V  L  F  V  E  E  M  D  P  Q  L  T  L  S  D  T   : G  F  G  R  T  F  L  F  L  S  L  S  A  C  L  P  T  F  V  F  W  S  S  F  W :   L  P  E  W  D  P  A  R  S  L  Y  L  C  P  F  H  A  S  W  V  S  L  H  P  *  Q  Q  Q  L  W  :  C  K  G  D  M  L  G  F  M  L  S  V  S  L  P  W  W  F  C  L  L  M  C  S  T  H  C :   F  E  C  R  Q  F  *  L  F  F  L  P  P  L  R  V  L  E  V  *  C  V  G  L  L  F  F  L  S  F  *  N  G  G  V  D  G  I  I  G  Q  M  S  H  M  I  L  K  K  G  H  S  Q  I  N  H  Q  K  L  L  L  C  L  R  *  K  V  K  L  V  E  L  K  L  V  L  L  E  L  S  M  E  V  D  T  G  Q  T  *  S  L  Y  I  K  K  P  K  E  N  T  S  F  C  L  L  *  A  K  L  L  *  C  I  A  S  P  C  K  S  Q  L  Y  S  F  E  F  I  S  K  L  S  F  K  L  Q  N  S  K  H  E  H  E  T  *  N  E  F  N  C  R  L  *  V  Q  E  W  R  C  T  Q  K  T  S  G  S  F  F  Q  *  M  G  S  A  *  K  E  T  E  I  M  *  I  P  *  R  Y  K  D  L  F  S  C  Y  Q  K  I  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0068C01.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66002" stop="66070"/>
                    <exon start="67076" stop="67374"/>
                    <exon start="67694" stop="67766"/>
                    <exon start="67837" stop="67927"/>
                    <exon start="68074" stop="68153"/>
                    <exon start="68567" stop="68818"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>861</number_coding_nucleotides>
                  <number_encoded_amino_acids>287</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SPQLLSCQDMMIHHQMQLKLLAQCYGSVENANFGGDITQEEAVCRICFIELGEDSETLKMECSCKGELALAHQSCAVKWFSIKGNKICDVCNEEVRNLPVTLLRIQSTIRRGNGSPADSVRYRVWQDVPVLVLVSMLAYFCFLEQLLVTRMGSGAIAISLPFSCILGLLASMTATTMVQRRYAWVYAVSQFALVVLFAHVFYSLLRVQAVLAVLLATFAGFGGVMCGTSFLLELLKWRSRWNYWSNEPHDSQEGAQPNQSSEVTPMPQVESQTRRAEAGTSGVVNGS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0068C01.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63249" stop="63392"/>
                    <exon start="64408" stop="64899"/>
                    <exon start="65899" stop="66070"/>
                    <exon start="67076" stop="67092"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>822</number_coding_nucleotides>
                  <number_encoded_amino_acids>274</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFSFFFYKPIVSIKMETSDQRSLAEEDGKNCTNNLNSRVDPPPLLVEKVGESSEIVEELQLCELQTKQLPLEVPERTIDGQTEDFVRIDMSTSPVQTPKRVIFSPSPSPNHVRLNESPSPSLPWAKSSIKSLLPKISFKLRNKTSDIEKAAMLALGVSPLPQDKPSILRTLSIKRIFNSKMNRTSSLPITPIEHSNPESTHGDYRDATFYSVKAGVHPILRSHSVPTLIKDESLKQMDCVGNVYRVVPSTPLVPRHDDTSSNATQTIGAVLWFS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0068C01.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68908" stop="69105"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVLASHNCTVLSLYQSSRSNFRILNMNTRLEMNSTVGCRFRNGVARKRRVVHFSSRWAVHERKLK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="66559" e_stop="67198"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.917"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.917">
            <gDNA_exon_boundary e_start="66559" e_stop="67198" e_length="640"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66559" stop="67198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M4034" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATTAGGTTGCTTAGTGGGTCATGCTAATTTCTGACGACCGCAACTTTTGTGGAGAAATATAATTAGAAGTTGTATTACACTCCCTCCGTTGCAATTTGCTTGTCTTACTTTTCTTTTTAGTCCGTTTCAAATAGAATGTCTCTTTTCCTTTTTGGCAACTCTTAAATATCAAATTTTTTACATATGACATGTTTAAGACCACAACATTAAATGACAATTTGGAATATTCTGCATATTTTTAGTTTAAGACCACAAGATTAAAAAATATTCGTTGCTTTCTTAAACTCCGTGCCATGTCAAGACCATAGAAAGAAATTGAAACAGAGGAAGTGGAATCTGATTTATATTCCAAAGAATCATCGCTCAGAATCTGGTAACTATGGGAAATCGATTTAATAACCGATATTTGGACACAGAATATTCTGTTAATCTATTCTTATGTAGATACGCATCCTGCATTCATGACTTGAACCTTATGTTCACTCACCTGGGATAACTAACCTACACCTTTCTTAGTGTTATGGTTCAGTTGAAAATGCTAATTTTGGTGGAGACATCACTCAAGAAGAGGCTGTCTGCAGAATCTGCTTCATCGAACTTGGGGAGGATTCGGAAACTTTGAAGATGGAGTGTAGCTGT</gDNA_template>
            <first_frame> N  *  V  A  *  W  V  M  L  I  S  D  D  R  N  F  C  G  E  I  *  L  E  V  V  L  H  S  L  R  C  N  L  L  V  L  L  F  F  L  V  R  F  K  *  N  V  S  F  P  F  W  Q  L  L  N  I  K  F  F  T  Y  D  M  F  K  T  T  T  L  N  D  N  L  E  Y  S  A  Y  F  *  F  K  T  T  R  L  K  N  I  R  C  F  L  K  L  R  A  M  S  R  P  *  K  E  I  E  T  E  E  V  E  S  D  L  Y  S  K  E  S  S  L  R  I  W  *  L  W  E  I  D  L  I  T  D  I  W  T  Q  N  I  L  L  I  Y  S  Y  V  D  T  H  P  A  F  M  T  *  T  L  C  S  L  T  W  D  N  *  P  T  P  F  L  V  L  W  F  S  *  K  C  *  F  W  W  R  H  H  S  R  R  G  C  L  Q  N  L  L  H  R  T  W  G  G  F  G  N  F  E  D  G  V  *  L  </first_frame>
            <second_frame>  I  R  L  L  S  G  S  C  *  F  L  T  T  A  T  F  V  E  K  Y  N  *  K  L  Y  Y  T  P  S  V  A  I  C  L  S  Y  F  S  F  *  S  V  S  N  R  M  S  L  F  L  F  G  N  S  *  I  S  N  F  L  H  M  T  C  L  R  P  Q  H  *  M  T  I  W  N  I  L  H  I  F  S  L  R  P  Q  D  *  K  I  F  V  A  F  L  N  S  V  P  C  Q  D  H  R  K  K  L  K  Q  R  K  W  N  L  I  Y  I  P  K  N  H  R  S  E  S  G  N  Y  G  K  S  I  *  *  P  I  F  G  H  R  I  F  C  *  S  I  L  M  *  I  R  I  L  H  S  *  L  E  P  Y  V  H  S  P  G  I  T  N  L  H  L  S  *  C  Y  G  S  V  E  N  A  N  F  G  G  D  I  T  Q  E  E  A  V  C  R  I  C  F  I  E  L  G  E  D  S  E  T  L  K  M  E  C  S  C </second_frame>
            <third_frame>   L  G  C  L  V  G  H  A  N  F  *  R  P  Q  L  L  W  R  N  I  I  R  S  C  I  T  L  P  P  L  Q  F  A  C  L  T  F  L  F  S  P  F  Q  I  E  C  L  F  S  F  L  A  T  L  K  Y  Q  I  F  Y  I  *  H  V  *  D  H  N  I  K  *  Q  F  G  I  F  C  I  F  L  V  *  D  H  K  I  K  K  Y  S  L  L  S  *  T  P  C  H  V  K  T  I  E  R  N  *  N  R  G  S  G  I  *  F  I  F  Q  R  I  I  A  Q  N  L  V  T  M  G  N  R  F  N  N  R  Y  L  D  T  E  Y  S  V  N  L  F  L  C  R  Y  A  S  C  I  H  D  L  N  L  M  F  T  H  L  G  *  L  T  Y  T  F  L  S  V  M  V  Q  L  K  M  L  I  L  V  E  T  S  L  K  K  R  L  S  A  E  S  A  S  S  N  L  G  R  I  R  K  L  *  R  W  S  V  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLe0068C01.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="138199" PGL_stop="136638"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="138199" e_stop="137883"/>
            <exon e_start="137454" e_stop="136638"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="138199" e_stop="137883" e_length="317"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="0.999">
            <gDNA_intron_boundary i_start="137882" i_stop="137455" i_length="428"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="137454" e_stop="136638" e_length="817"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="138199" stop="137883"/>
              <exon start="137454" stop="136638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M8146" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="138154" stop="137883"/>
              <exon start="137454" stop="137005"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M8146-2" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="138139" stop="137883"/>
              <exon start="137454" stop="137261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M1585" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACAAAGAACATCTTATCCAATTACCCTTTTATTTTTCACACACAGAGAGAAAAAGCTCAGAGAAAATGGCGGCTTCTCCTCTTCTTCTACACTCCACGGCCTCCTCTTTCTACAATGCTGAGTTTCCGGCGTACTCCGTTCGATTGCCGGTCGGAAATACCAAGGTCCGGTCGTCCAATAAATTGACGGTGAAAGCTTCAGCAACAGTACTAGTGGATAAAAGTGAAGCTGAAAAAGTTAATCGTCTGAAAACAAATTACCTCGAAAAGATTGTGCCGTTGTTGAAGGAAGAATTCAGTTACACCAATATTCTTCAG : GTTCCGAAGGTCGAAAAGATTGTGGTAAATTGTGGTATAGGAGATGCTGCACAAAATTCCAAGGGTTTGGATGCAGCAATGAATGATTTGGCCTTAATTACAGGGCAAAGGCCTGTGAAGACTAGGGCTAAGAATGCTATTGCTACTTTCAAAATTAGAGAAGGTCAACCGCTTGGAATTGCTGTTACACTTCGAGGGAATGTAATGTATTCGTTCCTTGACCGGTTAATTAATTTGGGGCTTCCTCGAACGAGGGACTTTCAAGGCGTAAACCCCAATAGCTTTGATGGTCATGGAAATTATAGCATTGGCTTTCGTGAACAGAGTGTCTTCCCAGAGTTAAGTTATGATGCTCTTGGTAAGCCAAGAGGGATGGATGTTTGCATAACAACAACAGCTGAGACAGATAAAGAGGCACACAGATTGTTGGCTCTCATGGGTATGCCATTTAGAGAAGGTTCTGGTGGACAGACAACTTTTACGAAAAAGAAAAAGCTTAGAGCTCACCATTTTGACTCGAAGGCGAAGCAAAGGTCTAGGAGATGAGGTGGATCCAATCTCCAGGGATAATGAGTTGATTTGTTGTTTTTTAACTGTTCTGTGGTTTATCAGTTGTTTTTGGCGTACAATTTGAATAGAAAAATCTGTAATTGCACTTTTACCATCTGGCTGGTGATGTCTCGAATATATGTTATTTACGTTTTCTTCCTCTAAAAAAATAAAAATAAGAATTGTTTTTATCTCTAGTTAAGTTTTTACTATTCATGAATCTTGATTACTGTAATTTGTATGTTATTAAATATTTCCTACCCGCTCC</gDNA_template>
            <first_frame> T  K  N  I  L  S  N  Y  P  F  I  F  H  T  Q  R  E  K  A  Q  R  K  W  R  L  L  L  F  F  Y  T  P  R  P  P  L  S  T  M  L  S  F  R  R  T  P  F  D  C  R  S  E  I  P  R  S  G  R  P  I  N  *  R  *  K  L  Q  Q  Q  Y  *  W  I  K  V  K  L  K  K  L  I  V  *  K  Q  I  T  S  K  R  L  C  R  C  *  R  K  N  S  V  T  P  I  F  F  R :   F  R  R  S  K  R  L  W  *  I  V  V  *  E  M  L  H  K  I  P  R  V  W  M  Q  Q  *  M  I  W  P  *  L  Q  G  K  G  L  *  R  L  G  L  R  M  L  L  L  L  S  K  L  E  K  V  N  R  L  E  L  L  L  H  F  E  G  M  *  C  I  R  S  L  T  G  *  L  I  W  G  F  L  E  R  G  T  F  K  A  *  T  P  I  A  L  M  V  M  E  I  I  A  L  A  F  V  N  R  V  S  S  Q  S  *  V  M  M  L  L  V  S  Q  E  G  W  M  F  A  *  Q  Q  Q  L  R  Q  I  K  R  H  T  D  C  W  L  S  W  V  C  H  L  E  K  V  L  V  D  R  Q  L  L  R  K  R  K  S  L  E  L  T  I  L  T  R  R  R  S  K  G  L  G  D  E  V  D  P  I  S  R  D  N  E  L  I  C  C  F  L  T  V  L  W  F  I  S  C  F  W  R  T  I  *  I  E  K  S  V  I  A  L  L  P  S  G  W  *  C  L  E  Y  M  L  F  T  F  S  S  S  K  K  I  K  I  R  I  V  F  I  S  S  *  V  F  T  I  H  E  S  *  L  L  *  F  V  C  Y  *  I  F  P  T  R  S </first_frame>
            <second_frame>  Q  R  T  S  Y  P  I  T  L  L  F  F  T  H  R  E  K  K  L  R  E  N  G  G  F  S  S  S  S  T  L  H  G  L  L  F  L  Q  C  *  V  S  G  V  L  R  S  I  A  G  R  K  Y  Q  G  P  V  V  Q  *  I  D  G  E  S  F  S  N  S  T  S  G  *  K  *  S  *  K  S  *  S  S  E  N  K  L  P  R  K  D  C  A  V  V  E  G  R  I  Q  L  H  Q  Y  S  S   : G  S  E  G  R  K  D  C  G  K  L  W  Y  R  R  C  C  T  K  F  Q  G  F  G  C  S  N  E  *  F  G  L  N  Y  R  A  K  A  C  E  D  *  G  *  E  C  Y  C  Y  F  Q  N  *  R  R  S  T  A  W  N  C  C  Y  T  S  R  E  C  N  V  F  V  P  *  P  V  N  *  F  G  A  S  S  N  E  G  L  S  R  R  K  P  Q  *  L  *  W  S  W  K  L  *  H  W  L  S  *  T  E  C  L  P  R  V  K  L  *  C  S  W  *  A  K  R  D  G  C  L  H  N  N  N  S  *  D  R  *  R  G  T  Q  I  V  G  S  H  G  Y  A  I  *  R  R  F  W  W  T  D  N  F  Y  E  K  E  K  A  *  S  S  P  F  *  L  E  G  E  A  K  V  *  E  M  R  W  I  Q  S  P  G  I  M  S  *  F  V  V  F  *  L  F  C  G  L  S  V  V  F  G  V  Q  F  E  *  K  N  L  *  L  H  F  Y  H  L  A  G  D  V  S  N  I  C  Y  L  R  F  L  P  L  K  K  *  K  *  E  L  F  L  S  L  V  K  F  L  L  F  M  N  L  D  Y  C  N  L  Y  V  I  K  Y  F  L  P  A   </second_frame>
            <third_frame>   K  E  H  L  I  Q  L  P  F  Y  F  S  H  T  E  R  K  S  S  E  K  M  A  A  S  P  L  L  L  H  S  T  A  S  S  F  Y  N  A  E  F  P  A  Y  S  V  R  L  P  V  G  N  T  K  V  R  S  S  N  K  L  T  V  K  A  S  A  T  V  L  V  D  K  S  E  A  E  K  V  N  R  L  K  T  N  Y  L  E  K  I  V  P  L  L  K  E  E  F  S  Y  T  N  I  L  Q  :  V  P  K  V  E  K  I  V  V  N  C  G  I  G  D  A  A  Q  N  S  K  G  L  D  A  A  M  N  D  L  A  L  I  T  G  Q  R  P  V  K  T  R  A  K  N  A  I  A  T  F  K  I  R  E  G  Q  P  L  G  I  A  V  T  L  R  G  N  V  M  Y  S  F  L  D  R  L  I  N  L  G  L  P  R  T  R  D  F  Q  G  V  N  P  N  S  F  D  G  H  G  N  Y  S  I  G  F  R  E  Q  S  V  F  P  E  L  S  Y  D  A  L  G  K  P  R  G  M  D  V  C  I  T  T  T  A  E  T  D  K  E  A  H  R  L  L  A  L  M  G  M  P  F  R  E  G  S  G  G  Q  T  T  F  T  K  K  K  K  L  R  A  H  H  F  D  S  K  A  K  Q  R  S  R  R  *  G  G  S  N  L  Q  G  *  *  V  D  L  L  F  F  N  C  S  V  V  Y  Q  L  F  L  A  Y  N  L  N  R  K  I  C  N  C  T  F  T  I  W  L  V  M  S  R  I  Y  V  I  Y  V  F  F  L  *  K  N  K  N  K  N  C  F  Y  L  *  L  S  F  Y  Y  S  *  I  L  I  T  V  I  C  M  L  L  N  I  S  Y  P  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0068C01.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="138197" stop="137883"/>
                    <exon start="137454" stop="136909"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>858</number_coding_nucleotides>
                  <number_encoded_amino_acids>286</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KEHLIQLPFYFSHTERKSSEKMAASPLLLHSTASSFYNAEFPAYSVRLPVGNTKVRSSNKLTVKASATVLVDKSEAEKVNRLKTNYLEKIVPLLKEEFSYTNILQVPKVEKIVVNCGIGDAAQNSKGLDAAMNDLALITGQRPVKTRAKNAIATFKIREGQPLGIAVTLRGNVMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGFREQSVFPELSYDALGKPRGMDVCITTTAETDKEAHRLLALMGMPFREGSGGQTTFTKKKKLRAHHFDSKAKQRSRR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 18 chains have been computed
$ 
$ memory statistics:
$ 10136 bytes spliced alignments in total
$ 5 spliced alignments have been stored
$ 2027 bytes was the average size of a spliced alignment
$ 7048 bytes predicted gene locations in total
$ 2 predicted gene locations have been stored
$ 3524 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 18 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-19 11:43:07
-->
