<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-19 11:33:26"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E691171" ref_strand="+" ref_description="SGN-E691171 [LH_Ea05G17]">
      <seq>tcctcgtgccgaattcggcacgaggctactctgttatttctctacataactgtccttactgttattggctacaaaagccagagttccactgatcaatgtggtggagttggtattcttggaatcgcttgggcatttgggggtatgatttttgtacttgtttactgtactgctggtatttctggtggacacatcaaccctgctgttacatttggtcttttcttagctcgaaaagtatcgttggttcgagctatcatgtacattttagctcaatgtttaggagccatttgtggttgtggattagtaaaagcttttcaaaaagcttattatgtcaaatatggcggtggtgccaatacgttgaatgatggatatagtactggtactggtttgggtgcagagattattggaacattcgttcttgtttacactgtttttgctgctaccgatcctaagaggaacgccagagactcacacgttcctgtacttgcgcctctacccattggatttgcggtgtttatggttcacttggctacaattcctgtaactggaactggaattaatcctgctaggagttttggagctgctgttatttatggacataacaaagcttgggatgatcaatggatattttgggttggaccatttattggtgctgcaattgctgcattttatcatcagtttattttgagagctggagctgttaaagcacttggttcattcaggagcaatgcttaattataattatgagaattgaaaattgtatatataagtatttgagaaaaaaaagtctctttaaattatgttgttagagttgtgttggctgtttggccacttaaatttaaaatttgcccaaacaacattttctactttaatttccctttttttctttgggggggttttttttttttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="+" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="1" stop="52290"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1" g_stop="456" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="477" r_length="455" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="457" i_stop="541" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="542" g_stop="682" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="618" r_length="141" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="683" i_stop="763" i_length="81">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="764" g_stop="917" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="619" r_stop="766" r_length="148" r_score="0.929"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="918" i_stop="1611" i_length="694">
            <donor d_prob="0.000" d_score="0.78"/>
            <acceptor a_prob="0.984" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1612" g_stop="1618" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="767" r_stop="773" r_length="7" r_score="0.714"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1619" i_stop="1888" i_length="270">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1889" g_stop="1906" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="774" r_stop="791" r_length="18" r_score="0.667"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="1907" i_stop="4335" i_length="2429">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.842" a_score="0.65"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="4336" g_stop="4375" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="792" r_stop="829" r_length="38" r_score="0.650"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="4376" i_stop="5131" i_length="756">
            <donor d_prob="0.000" d_score="0.65"/>
            <acceptor a_prob="0.000" a_score="0.62"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="5132" g_stop="5216" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="830" r_stop="914" r_length="85" r_score="0.600"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="+" ref_id="SGN-E691171" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>901</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E691171" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1" e_stop="456"/>
          <exon e_start="542" e_stop="682"/>
          <exon e_start="764" e_stop="917"/>
          <exon e_start="1612" e_stop="1618"/>
          <exon e_start="1889" e_stop="1906"/>
          <exon e_start="4336" e_stop="4375"/>
          <exon e_start="5132" e_stop="5216"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGCTACTCTGTTATTTCTCTACATAACTGTCCTTACTGTTATTGGCTACAAAAGCCAGAGCTCCACTGATCAATGTGGTGGAGTTGGTATTCTTGGAATCGCTTGGGCATTTGGGGGTATGATCTTTGTACTTGTTTACTGTACTGCGGGTATTTCTGGTGGACACATTAACCCTGCTGTTACATTCGGCCTTTTCTTAGCTCGAAAAGTATCGTTGGTTCGAGCTATCATGTACATTGTAGCTCAATGTTTAGGAGCCATTTGTGGTTGTGGATTAGTAAAAGCTTTTCAAAAAGCTTATTATGTCAAATATGGCGGTGGTGCCAATACGTTGAACGATGGATATAGTACTGGTACTGGTTTGGGTGCGGAGATCATTGGAACATTCGTTCTTGTTTACACTGTTTTTGCTGCTACCGATCCTAAGAGGAACGCCAGAGACTCACACGTTCCTGTAAGTATAATTTTCATATACATAAATATAAAAATTTAATGATTGTTCCGTTCAATTAAACTTCAATTCCGATCCTTTTTTTAAGGTACTTGCGCCTCTACCCATTGGATTTGCGGTGTTTATGGTTCACTTGGCTACAATTCCTGTAACTGGAACTGGAATTAATCCTGCAAGGAGTTTTGGTGCTGCTGTTGTTTATGGACATAACAAAGCTTGGGATGATCAAGTAAGTAAATTTATGAGTTTTGGTTACTATTTTGAAACGGTATAATTTAATTGAATTTTTGGTTATTAAAATTGTGAACAGTGGATATTTTGGGTTGGACCATTTATTGGTGCTGCAATTGCTGCATTTTATCATCAGTTTATTTTGAGAGCTGGAGCTGTTAAAGCACTTGGTTCATTCAGGAGCAATGCTTAATTAGTACAATTATCATGAAGAATTGAAAATTGTACAT-TATGTTTTTTTTTTTAATGTTATTAGAGTTGTTTAGCATTTGTTTTAGATTTGTTAAACAATGTCATTACTACTTTTTTCTTTTTAATTTGTTTCCTTTTTTTTTTGGTGTGTGTTTCTGTAATTTTTCACTATGCTTTGTTTTGAGTATCTAAATAATGGAATTATGAACAAGGCTATTATCATTGTGTCTCTTTTGGTAAGTTATTGTCATATGATGAAGAGAAAATGAGATTAAATCGTGAAGAGAAGCGATTGTAGAAATACATGATAAGATTATGTATAATAAATATATGATTGAGAGAGCATAAGTTTAAATCATGAAGAAAGGCGATTGTAGAAATACAGAATAAATTATATATAATAAATTATTGTTGTGATCTGTTCCTTCTATGTACTCATGCTTACTGGGAATTTTGATACATCGAGTTATTTTTCTTTTTAAAAAGTGAAAATGAAATTATGAGTAACTCAATAATTAGTTGTAATAGCATAATTCTAAATGTTGGTAATAATGTAGGAATCTTTCCAAATTAGGCAAAGTTTATTGAACATCTAGACATTAAACAATAAATTAAAATTCCATCTAGTGTCACGAGCCAAATATTAGTCTGTTTGACTGTTTGTTTTTTTTAATAGCTTTTTAAAAAAGTACTTTAAAAATAATAATTTATACTTGATAAATTTATTGAAATTAGGTCTTAGGTCTTGCGCCTAATTCACATCACAAAAGTTAGCTCGAAGAAATGAGGATTATCCAAGCCTTATAAGGAATCCATCCATCTCATTAATCATCGAATCGATGTGTGACTTTTATCATTTTTTAACGTAGACTATTTATTATAGGGAAGAGAAAAGGTGTGTTCTTATTGAATGTGAAAATTATATGTTATTGCTACAAACATTTACTCAAGCCCTACTTGTTTAACTAATACTCCTACTACATTGCTATAAATTTATATCGTACTCTCTCAGTTTAAAAAAAATGTCTGTATTTCCTTTTTAGTTTGTTTCAAAAAAATTGATCTTTTTCCTTTTTTGACAATACTTTAACTTTATCTTTCCACTTGACATGTTTATAACCACAAGATTAAAGAACATTTTAGTACATTTGACATAACTTTAATTTAGAAACACAAAATTAAAAAGTTTTTTTCTTTTCTTAAACTCCGTTTCAAGTTAAATTAGATCAAAACGGATGAAGATATGATTTTGATAAGTAACTTATGCTTGACTATTTTATTTTTAAAAAAAAAAATATTTCAAGAGTCAAATTATGAAAAATTAAGCCTTCATTTTTTTTCAAAATTATTTAAAATTGAACATGCTGAGTTGGAATGGTCGATAGTAATTGAGTGTGAATGGGGTGGGAGGTAGGGTTTGCTTGATTTGAAGGTATTTAAAAAAAAAGGAAGAATAATTATTGAAACTTTGAATTTGTTAATAAACTTTACCTAAACATATGAAAACGATTTAACACCTAAAGACAATTAATTTAAATTTTTAAAAAAGTTTATAGGAATGTTCTCGAAAACCGACTGGGTTTATTATTTCTAAAGCATAATAATTATGGTCGGTTCATATATATATATACACATCAAACCTTAGCTGTTTAATTAAATAAGCTGCCTCACTAATCACTCACCTCCTCCTATGGATTAGCATAATCAAAGGCCTAAGTATTTTAAGTAGGTGGAATACTTACAAAACATTAGTACATATGTTAAGAGAGAAGCATCGAAAATACTTCTGTACTCGCTGTAAATTATTAGTTTCAAAGTTAAACTATCTCTTTTTACTTTACTAATTAAATTTAGATACATGCATAATACATTCTTGATCTACCACATGTGGCGAACTCAAGATTTTCGTCCAGAAAGTTTTTTTTTCTTAAAAAATAAACGTGTAAATAAGCATTTAGAAATGAAAATTTTATATTCTTTTGAGTTTAAAACCATACTTTTAGCACGTTTTCAAAAATTAAAAAAAATGTGAAAATGAAACTAAAACTAAAAATGAAAACACTATCATAGGGGTTCGAATCGGTGACATGAAGCTAAATTTAAGGGGACTTAACACTGCGCCATTAATATCTACTGGTCATTAAAGGGGTTCAACATATATATTTCTACAGAAATACACATAAAAATTATATATATACGGCGTAACTTTTTGCTAAAGGGGTTCGAGTGAACTCCCTGAATCCCACATAGGTTTTCCCCAAACTCTTGTGGGAGTGTTGGGTGTTTAGTAAAAGTTCGAGAGTAGAGTTGAAAACACCCCAATCTTTTCAAGGATTCAGGGGTGTATTTCACTCATGTTGCAAAATTTGGCTTTGAAGTATATTTAAGTTCAGTTAATCAAATAAAAAGATATTTTTAAAATTGTTAATAGTTCGCAGATGAAACTAATAAACGAGACAATAGTTATCTAACCTCATGTCATTCAGAATTAGGTCATAGTTAAGGGTACTTTTAAGTTTTGCTCCACAATTTTTCACTAAATAGTTAATATTGACAAAAATTAAAGACTATTATATATAAGTGCAACAACTAAATACTTATACAACAAATCAACATAAAAGTTATGGGCCCAAATTAAGATCCGGCCCAAAATCATAGTGCTTTCATTCGGCCCGCATGCTTTCTGGGCCTTTGTGTACAATATCTGGCCCAGAGTACAAGTGAAACACAACCATTTTTTGTGTATATCATATCAAATCAATCCTTATATTTTTATTAAACTAAAATATAAATACTTAATAAACTACAATAAATAATGCAAATATAACCTTTTATAACTGTAGTAGTTTTTCATCACTTATTTAATTGTTTCTTTCTCTATAAATTTTTGGACCGTTAGTTTCCTTGAGTTGTACATCTATCGAAAATAGTCTCCATTTTAAGATAAGTGTAAGGTCTACGTACATTTTACTCTTCCAAACTCCACTTTACGAAATGACATTAAATAAATATATTGTCGTTGTTGTTATAGTATAACCTTTTATTGCTTAAAGTATTTTTATAATATTTTAAATCTTCATAGAAGAAAATAATTATTCTGACTCTCCAATTAATAATTCATTTTCTTATGAAATGTGGCCTAAGCTCAAATTAGCAAAACAAGAGGCTGAAAAAGCCCACTGAACTAATATTATTTGAATGATTATTTATTTGCGGCAGAATAAATTTTTTTAATCCTTCATAAATAATCGTATACTATGTATTCACACAGTAACATCGAAGTCAGAATTTTCATTAAAAATATTTAAAAATATAAAGAAATAAATACTTGAAAAAGTTTTAAAAATTCTAACATATTCCATATATATATATATATAGATAGATAGATATAAAATAAGAGATGCTTCTTTTTTCCTCTTTGTATATATTTTTATAATTGCATGACCGTTGAATATTCAGATATTGGTGTTAATTAAATACGTTTTGCCTAGTTAGCCACATGCAAAAGTATATTCATGTCCACACTTAAATTATATTTGTATGATTTTAATATTATCAATGTATGTACGTAGTTTGCACTATATATATATTATGTTGCTAATATTTACATATTTAATCACTTTAAAAGCAATCAATTGTGTAACTATTTTTTTTAAATATATATATATATGGGTAGTATATATAGTGGACTAGTAAACATGAATATATATCGAAGGTCGGAGGAAGAGCTAATATTGAAGCTCGCATAATACTCTTTCCGTTCAGTTTTACTTGTCACTGTTTGATTTGATCATAACACATCCATCACACTCATACTATTAAGTCTTGAAAATGATTTAAAAAATATGTATTTAATGTTAAAAATAAAACATAAAAAAGAGATATTTTTTCTTGATATGTCAAAAAAAGTGACAAGTAAAACTGAATTAACGGAGTATTTAATTTTATTAAACACAAGATGTGCCCTTTAATGTTGTTAGTATAGTCACTAGTACATATCAAAGGACAGAGCTATCATTTAATACTCCAAAATTGGACATGGTTGGCTGTCTCCTTAATATAATACTTTAGAAAAAAAACTTAAAAAAATATATTTTGAAATTATTTTTTTAAAAAAAAAATTGAAGAAGAAGAAGACAATTTCTTCCATTTTACCCATCTCTATAAGATCTGTTTGCTTTTCTGTCTACATGCTCTTCTGTTATTTCTTATGAATAAATAGTTGCTTTTTTTTCTCTCTTTATATTTTAAAACATTAAATTAGCAAGTTGACCATCAAAAATTTCATTTTTTTAATTCATAATTAATGTGTCATACATGTTTTTCTCCTTTTTTTTTTT</genome_strand>
        <mrna_strand>A-GGCTACTCTGTTATTTCTCTACATAACTGTCCTTACTGTTATTGGCTACAAAAGCCAGAGTTCCACTGATCAATGTGGTGGAGTTGGTATTCTTGGAATCGCTTGGGCATTTGGGGGTATGATTTTTGTACTTGTTTACTGTACTGCTGGTATTTCTGGTGGACACATCAACCCTGCTGTTACATTTGGTCTTTTCTTAGCTCGAAAAGTATCGTTGGTTCGAGCTATCATGTACATTTTAGCTCAATGTTTAGGAGCCATTTGTGGTTGTGGATTAGTAAAAGCTTTTCAAAAAGCTTATTATGTCAAATATGGCGGTGGTGCCAATACGTTGAATGATGGATATAGTACTGGTACTGGTTTGGGTGCAGAGATTATTGGAACATTCGTTCTTGTTTACACTGTTTTTGCTGCTACCGATCCTAAGAGGAACGCCAGAGACTCACACGTTCCT.....................................................................................GTACTTGCGCCTCTACCCATTGGATTTGCGGTGTTTATGGTTCACTTGGCTACAATTCCTGTAACTGGAACTGGAATTAATCCTGCTAGGAGTTTTGGAGCTGCTGTTATTTATGGACATAACAAAGCTTGGGATGATCAA.................................................................................TGGATATTTTGGGTTGGACCATTTATTGGTGCTGCAATTGCTGCATTTTATCATCAGTTTATTTTGAGAGCTGGAGCTGTTAAAGCACTTGGTTCATTCAGGAGCAATGCTTAATTA-T--AA-T-T-ATG-AGAATTGAAAATTGTATATATAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTG..............................................................................................................................................................................................................................................................................AGAAAAAAAAGTCTCTTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATT-ATGTT-GTTAGAGTTGTGTTGGCTGTTTGGCCAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAATTTAAAATTTGCCCAAACAACATTTTCTACTTTAATTTCCCTTTTTTTCTTTGGGGGGGTTTTTTTTTTTTTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E241639" ref_strand="+" ref_description="SGN-E241639 [cLED-36-L15]">
      <seq>taggaaaatggtcattttacagagctataattgctgaattcatagctactctgttatttctctacataactgtccttactgttattggctacaaaagccagagctccactgatcaatgtggtggagttggtattcttggaatcgcttgggcatttgggggtatgatctttgtacttgtttactgtactgcgggtatttctggtggacacattaaccctgctgttacattcggccttttcttagctcgaaaagtatcgttggttcgagctatcatgtacattgtagctcaatgtttaggagccatttgtggttgtggattagtaaaagcttttcaaaaagcttattatgtcaaatatggcggtggtgccaatacgttgaacgatggatatagtactggtactggtttgggtgcggagatcattggaacattcgttcttgtttacactgtttttgctgctaccgatcctaagaggaacgccagagactcacacgttcctgtacttgcgcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="+" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="1" stop="759"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1" g_stop="456" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="497" r_length="456" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="457" i_stop="541" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="542" g_stop="553" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="509" r_length="12" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="+" ref_id="SGN-E241639" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="0.919" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241639" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1" e_stop="456"/>
          <exon e_start="542" e_stop="553"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGCTACTCTGTTATTTCTCTACATAACTGTCCTTACTGTTATTGGCTACAAAAGCCAGAGCTCCACTGATCAATGTGGTGGAGTTGGTATTCTTGGAATCGCTTGGGCATTTGGGGGTATGATCTTTGTACTTGTTTACTGTACTGCGGGTATTTCTGGTGGACACATTAACCCTGCTGTTACATTCGGCCTTTTCTTAGCTCGAAAAGTATCGTTGGTTCGAGCTATCATGTACATTGTAGCTCAATGTTTAGGAGCCATTTGTGGTTGTGGATTAGTAAAAGCTTTTCAAAAAGCTTATTATGTCAAATATGGCGGTGGTGCCAATACGTTGAACGATGGATATAGTACTGGTACTGGTTTGGGTGCGGAGATCATTGGAACATTCGTTCTTGTTTACACTGTTTTTGCTGCTACCGATCCTAAGAGGAACGCCAGAGACTCACACGTTCCTGTAAGTATAATTTTCATATACATAAATATAAAAATTTAATGATTGTTCCGTTCAATTAAACTTCAATTCCGATCCTTTTTTTAAGGTACTTGCGCCT</genome_strand>
        <mrna_strand>ATAGCTACTCTGTTATTTCTCTACATAACTGTCCTTACTGTTATTGGCTACAAAAGCCAGAGCTCCACTGATCAATGTGGTGGAGTTGGTATTCTTGGAATCGCTTGGGCATTTGGGGGTATGATCTTTGTACTTGTTTACTGTACTGCGGGTATTTCTGGTGGACACATTAACCCTGCTGTTACATTCGGCCTTTTCTTAGCTCGAAAAGTATCGTTGGTTCGAGCTATCATGTACATTGTAGCTCAATGTTTAGGAGCCATTTGTGGTTGTGGATTAGTAAAAGCTTTTCAAAAAGCTTATTATGTCAAATATGGCGGTGGTGCCAATACGTTGAACGATGGATATAGTACTGGTACTGGTTTGGGTGCGGAGATCATTGGAACATTCGTTCTTGTTTACACTGTTTTTGCTGCTACCGATCCTAAGAGGAACGCCAGAGACTCACACGTTCCT.....................................................................................GTACTTGCGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E240425" ref_strand="+" ref_description="SGN-E240425 [cLED-25-F10]">
      <seq>taggaaaatggtcattttacagagctataattgctgaattcatagctactctgttatttctctacataactgtccttactgttattggctacaaaagccagagctccactgatcaatgtggtggagttggtattcttggaatcgcttgggcatttgggggtatgatctttgtacttgtttactgtactgcgggtatttctggtggacacattaaccctgctgttacattcggccttttcttagctcgaaaagtatcgttggttcgagctatcatgtacattgtagctcaatgtttaggagccatttgtggttgtggattagtaaaagcttttcaaaaagcttattatgtcaaatatggcggtggtgccaatacgttgaacgatggatatagtactggtactggtttgggtgcggagatcattggaacattcgttcttgtttacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="+" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="1" stop="704"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1" g_stop="404" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="445" r_length="404" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="+" ref_id="SGN-E240425" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="0.908" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240425" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1" e_stop="404"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGCTACTCTGTTATTTCTCTACATAACTGTCCTTACTGTTATTGGCTACAAAAGCCAGAGCTCCACTGATCAATGTGGTGGAGTTGGTATTCTTGGAATCGCTTGGGCATTTGGGGGTATGATCTTTGTACTTGTTTACTGTACTGCGGGTATTTCTGGTGGACACATTAACCCTGCTGTTACATTCGGCCTTTTCTTAGCTCGAAAAGTATCGTTGGTTCGAGCTATCATGTACATTGTAGCTCAATGTTTAGGAGCCATTTGTGGTTGTGGATTAGTAAAAGCTTTTCAAAAAGCTTATTATGTCAAATATGGCGGTGGTGCCAATACGTTGAACGATGGATATAGTACTGGTACTGGTTTGGGTGCGGAGATCATTGGAACATTCGTTCTTGTTTACAC</genome_strand>
        <mrna_strand>ATAGCTACTCTGTTATTTCTCTACATAACTGTCCTTACTGTTATTGGCTACAAAAGCCAGAGCTCCACTGATCAATGTGGTGGAGTTGGTATTCTTGGAATCGCTTGGGCATTTGGGGGTATGATCTTTGTACTTGTTTACTGTACTGCGGGTATTTCTGGTGGACACATTAACCCTGCTGTTACATTCGGCCTTTTCTTAGCTCGAAAAGTATCGTTGGTTCGAGCTATCATGTACATTGTAGCTCAATGTTTAGGAGCCATTTGTGGTTGTGGATTAGTAAAAGCTTTTCAAAAAGCTTATTATGTCAAATATGGCGGTGGTGCCAATACGTTGAACGATGGATATAGTACTGGTACTGGTTTGGGTGCGGAGATCATTGGAACATTCGTTCTTGTTTACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E228117" ref_strand="+" ref_description="SGN-E228117 [cLED-2-B18]">
      <seq>taggaaaatggtcattttacagagctataattgctgaattcatagctactctgttatttctctacataactgtccttactgttattggctacaaaagccagagctccactgatcaatgtggtggagttggtattcttggaatcgcttgggcatttgggggtatgatctttgtacttgtttactgtactgcgggtatttctggtggacacattaaccctgctgttacattcggccttttcttagctcgaaaagtatcgttggttcgagctatcatgtacattgtagctcaatgtttaggagccatttgtggttgtggattagtaaaagcttttcaaaaagcttattatgtcaaatatggcggtggtgccaatacgttgaacgatggatatagtactggtactggtttgggtgcggagatcattggaacattcgttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="+" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="1" stop="694"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1" g_stop="394" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="435" r_length="394" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="+" ref_id="SGN-E228117" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>394</cumulative_length_of_scored_exons>
        <coverage percentage="0.906" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228117" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1" e_stop="394"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGCTACTCTGTTATTTCTCTACATAACTGTCCTTACTGTTATTGGCTACAAAAGCCAGAGCTCCACTGATCAATGTGGTGGAGTTGGTATTCTTGGAATCGCTTGGGCATTTGGGGGTATGATCTTTGTACTTGTTTACTGTACTGCGGGTATTTCTGGTGGACACATTAACCCTGCTGTTACATTCGGCCTTTTCTTAGCTCGAAAAGTATCGTTGGTTCGAGCTATCATGTACATTGTAGCTCAATGTTTAGGAGCCATTTGTGGTTGTGGATTAGTAAAAGCTTTTCAAAAAGCTTATTATGTCAAATATGGCGGTGGTGCCAATACGTTGAACGATGGATATAGTACTGGTACTGGTTTGGGTGCGGAGATCATTGGAACATTCGTTC</genome_strand>
        <mrna_strand>ATAGCTACTCTGTTATTTCTCTACATAACTGTCCTTACTGTTATTGGCTACAAAAGCCAGAGCTCCACTGATCAATGTGGTGGAGTTGGTATTCTTGGAATCGCTTGGGCATTTGGGGGTATGATCTTTGTACTTGTTTACTGTACTGCGGGTATTTCTGGTGGACACATTAACCCTGCTGTTACATTCGGCCTTTTCTTAGCTCGAAAAGTATCGTTGGTTCGAGCTATCATGTACATTGTAGCTCAATGTTTAGGAGCCATTTGTGGTTGTGGATTAGTAAAAGCTTTTCAAAAAGCTTATTATGTCAAATATGGCGGTGGTGCCAATACGTTGAACGATGGATATAGTACTGGTACTGGTTTGGGTGCGGAGATCATTGGAACATTCGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E241238" ref_strand="+" ref_description="SGN-E241238 [cLED-26-G10]">
      <seq>aaaatggtcattttacagagctataattgctgaattcatagctactctgttatttctctacataactgtccttactgttattggctacaaaagccagagctccactgatcaatgtggtggagttggtattcttggaatcgcttgggcatttgggggtatgatctttgtacttgtttactgtactgcgggtatttctggtggacacattaaccctgctgttacattcggccttttcttagctcgaaaagtatcgttggttcgagctatcatgtacattgtagctcaatgtttaggagccatttgtggttgtggattagtaaaagcttttcaaaaagcttattatgtcaaatatggcggtggtgccaatacgttgaacgatggatatagtactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="+" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="1" stop="655"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1" g_stop="355" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="392" r_length="355" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="+" ref_id="SGN-E241238" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>355</cumulative_length_of_scored_exons>
        <coverage percentage="0.906" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241238" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1" e_stop="355"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGCTACTCTGTTATTTCTCTACATAACTGTCCTTACTGTTATTGGCTACAAAAGCCAGAGCTCCACTGATCAATGTGGTGGAGTTGGTATTCTTGGAATCGCTTGGGCATTTGGGGGTATGATCTTTGTACTTGTTTACTGTACTGCGGGTATTTCTGGTGGACACATTAACCCTGCTGTTACATTCGGCCTTTTCTTAGCTCGAAAAGTATCGTTGGTTCGAGCTATCATGTACATTGTAGCTCAATGTTTAGGAGCCATTTGTGGTTGTGGATTAGTAAAAGCTTTTCAAAAAGCTTATTATGTCAAATATGGCGGTGGTGCCAATACGTTGAACGATGGATATAGTACTG</genome_strand>
        <mrna_strand>ATAGCTACTCTGTTATTTCTCTACATAACTGTCCTTACTGTTATTGGCTACAAAAGCCAGAGCTCCACTGATCAATGTGGTGGAGTTGGTATTCTTGGAATCGCTTGGGCATTTGGGGGTATGATCTTTGTACTTGTTTACTGTACTGCGGGTATTTCTGGTGGACACATTAACCCTGCTGTTACATTCGGCCTTTTCTTAGCTCGAAAAGTATCGTTGGTTCGAGCTATCATGTACATTGTAGCTCAATGTTTAGGAGCCATTTGTGGTTGTGGATTAGTAAAAGCTTTTCAAAAAGCTTATTATGTCAAATATGGCGGTGGTGCCAATACGTTGAACGATGGATATAGTACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E286612" ref_strand="+" ref_description="SGN-E286612 [cLES-12-I16]">
      <seq>ttacagagctataattgctgaattcatagctactctgttatttctctacataactgtccttactgttattggctacaaaagccagagctccactgatcaatgtggtggagttggtgttcttggaatcgcttgggcatttgggggtatgatctttgtacttgtttactgtactgcgggtatttctggtggacacattaaccctgctgttacatttggtcttttcttagctcgaaaagtatcgttggttcgagctatcatgtacattgtagctcaatgtttaggagccatttgtggttgtggattagtaaaagcttttcaaaaagcttattatgtcaaatatggcggtggtgccaatacgttgaacgatggatatagtac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="+" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="1" stop="653"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1" g_stop="353" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="378" r_length="353" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="+" ref_id="SGN-E286612" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>353</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286612" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1" e_stop="353"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGCTACTCTGTTATTTCTCTACATAACTGTCCTTACTGTTATTGGCTACAAAAGCCAGAGCTCCACTGATCAATGTGGTGGAGTTGGTATTCTTGGAATCGCTTGGGCATTTGGGGGTATGATCTTTGTACTTGTTTACTGTACTGCGGGTATTTCTGGTGGACACATTAACCCTGCTGTTACATTCGGCCTTTTCTTAGCTCGAAAAGTATCGTTGGTTCGAGCTATCATGTACATTGTAGCTCAATGTTTAGGAGCCATTTGTGGTTGTGGATTAGTAAAAGCTTTTCAAAAAGCTTATTATGTCAAATATGGCGGTGGTGCCAATACGTTGAACGATGGATATAGTAC</genome_strand>
        <mrna_strand>ATAGCTACTCTGTTATTTCTCTACATAACTGTCCTTACTGTTATTGGCTACAAAAGCCAGAGCTCCACTGATCAATGTGGTGGAGTTGGTGTTCTTGGAATCGCTTGGGCATTTGGGGGTATGATCTTTGTACTTGTTTACTGTACTGCGGGTATTTCTGGTGGACACATTAACCCTGCTGTTACATTTGGTCTTTTCTTAGCTCGAAAAGTATCGTTGGTTCGAGCTATCATGTACATTGTAGCTCAATGTTTAGGAGCCATTTGTGGTTGTGGATTAGTAAAAGCTTTTCAAAAAGCTTATTATGTCAAATATGGCGGTGGTGCCAATACGTTGAACGATGGATATAGTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E305972" ref_strand="+" ref_description="SGN-E305972 [cLEY-17-D7]">
      <seq>tcattttacggagctataattgctgaattcatagctactctgttatttctctacataactgtccttactgttattggctacaaaagccagagctccactgatcaatgtggtggagttggtattcttggaatcgcttgggcatttgggggtatgatctttgtacttgtttactgtactgcgggtatttctggtggacacattaaccctgctgttacattcggccttttcttagctcgaaaagtatcgttggttcgagctatcatgtacattgtagctcaatgtttaggagccatttgtggttgcggattactaaaagctttttaaaaagcttatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="+" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="1" stop="605"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1" g_stop="305" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="335" r_length="305" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="+" ref_id="SGN-E305972" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>305</cumulative_length_of_scored_exons>
        <coverage percentage="0.910" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305972" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1" e_stop="305"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGCTACTCTGTTATTTCTCTACATAACTGTCCTTACTGTTATTGGCTACAAAAGCCAGAGCTCCACTGATCAATGTGGTGGAGTTGGTATTCTTGGAATCGCTTGGGCATTTGGGGGTATGATCTTTGTACTTGTTTACTGTACTGCGGGTATTTCTGGTGGACACATTAACCCTGCTGTTACATTCGGCCTTTTCTTAGCTCGAAAAGTATCGTTGGTTCGAGCTATCATGTACATTGTAGCTCAATGTTTAGGAGCCATTTGTGGTTGTGGATTAGTAAAAGCTTTTCAAAAAGCTTATTA</genome_strand>
        <mrna_strand>ATAGCTACTCTGTTATTTCTCTACATAACTGTCCTTACTGTTATTGGCTACAAAAGCCAGAGCTCCACTGATCAATGTGGTGGAGTTGGTATTCTTGGAATCGCTTGGGCATTTGGGGGTATGATCTTTGTACTTGTTTACTGTACTGCGGGTATTTCTGGTGGACACATTAACCCTGCTGTTACATTCGGCCTTTTCTTAGCTCGAAAAGTATCGTTGGTTCGAGCTATCATGTACATTGTAGCTCAATGTTTAGGAGCCATTTGTGGTTGCGGATTACTAAAAGCTTTTTAAAAAGCTTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E228217" ref_strand="+" ref_description="SGN-E228217 [cLED-2-M18]">
      <seq>tcatagctactctgttatttctctacataactgtccttactgttattggctacaaaagccagagctccactgatcaatgtggtggagttggtattcttggaatcgcttgggcatttgggggtatgatctttgtacttgtttactgaactgcgggtatttctggtggacacattaaccctgctgttacattcggccttttcttagctcgaaaagtatcgttggttcgagctatcatgtacattgtagctcaatgtttaggagccatttgtggttgtggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="+" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="1" stop="577"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1" g_stop="277" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="3" r_stop="279" r_length="277" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="+" ref_id="SGN-E228217" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>277</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228217" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1" e_stop="277"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGCTACTCTGTTATTTCTCTACATAACTGTCCTTACTGTTATTGGCTACAAAAGCCAGAGCTCCACTGATCAATGTGGTGGAGTTGGTATTCTTGGAATCGCTTGGGCATTTGGGGGTATGATCTTTGTACTTGTTTACTGTACTGCGGGTATTTCTGGTGGACACATTAACCCTGCTGTTACATTCGGCCTTTTCTTAGCTCGAAAAGTATCGTTGGTTCGAGCTATCATGTACATTGTAGCTCAATGTTTAGGAGCCATTTGTGGTTGTGGAT</genome_strand>
        <mrna_strand>ATAGCTACTCTGTTATTTCTCTACATAACTGTCCTTACTGTTATTGGCTACAAAAGCCAGAGCTCCACTGATCAATGTGGTGGAGTTGGTATTCTTGGAATCGCTTGGGCATTTGGGGGTATGATCTTTGTACTTGTTTACTGAACTGCGGGTATTTCTGGTGGACACATTAACCCTGCTGTTACATTCGGCCTTTTCTTAGCTCGAAAAGTATCGTTGGTTCGAGCTATCATGTACATTGTAGCTCAATGTTTAGGAGCCATTTGTGGTTGTGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E274315" ref_strand="+" ref_description="SGN-E274315 [cLEN-15-I21]">
      <seq>tacataactgtccttactgttattggctacaaaagccagagctccactgatcaatgtggtggagttggtattcttggaatcgcttgggcatttgggggtatgatctttgtacttgtttactgtactgcgggtatttctggtggacacattaaccctgctgttacattcggccttttcttagctcgaaaagtatcgttggttcgagctatcatgtacattgtagctcaatgtttaggagccatttgtggttgtggattagtaaaagcttttcaaaaagcttattatgtcaaatatggcggtggtgccaatacgttgaacgatggatatagtactggtactggtttgggtgcggagatcattggaacattcgttcttgtttacactgtttttgctgctaccgatcctaagaggaacgccagagactcacacgttcctgtacttgcgcctctacccattggatttgcggtgtttatggttcacttggctacaattcctgtaactggaactggaattaatcctgcaaggagttttggtgctgctgttgtttatggacataacaaagcttgggatgatcaatggatattttgggttggaccatttattggtgctgcaattgctgcattttatcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="+" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="1" stop="1118"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22" g_stop="456" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="435" r_length="435" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="457" i_stop="541" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="542" g_stop="682" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="576" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="683" i_stop="763" i_length="81">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="764" g_stop="818" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="631" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="+" ref_id="SGN-E274315" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E274315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22" e_stop="456"/>
          <exon e_start="542" e_stop="682"/>
          <exon e_start="764" e_stop="818"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACATAACTGTCCTTACTGTTATTGGCTACAAAAGCCAGAGCTCCACTGATCAATGTGGTGGAGTTGGTATTCTTGGAATCGCTTGGGCATTTGGGGGTATGATCTTTGTACTTGTTTACTGTACTGCGGGTATTTCTGGTGGACACATTAACCCTGCTGTTACATTCGGCCTTTTCTTAGCTCGAAAAGTATCGTTGGTTCGAGCTATCATGTACATTGTAGCTCAATGTTTAGGAGCCATTTGTGGTTGTGGATTAGTAAAAGCTTTTCAAAAAGCTTATTATGTCAAATATGGCGGTGGTGCCAATACGTTGAACGATGGATATAGTACTGGTACTGGTTTGGGTGCGGAGATCATTGGAACATTCGTTCTTGTTTACACTGTTTTTGCTGCTACCGATCCTAAGAGGAACGCCAGAGACTCACACGTTCCTGTAAGTATAATTTTCATATACATAAATATAAAAATTTAATGATTGTTCCGTTCAATTAAACTTCAATTCCGATCCTTTTTTTAAGGTACTTGCGCCTCTACCCATTGGATTTGCGGTGTTTATGGTTCACTTGGCTACAATTCCTGTAACTGGAACTGGAATTAATCCTGCAAGGAGTTTTGGTGCTGCTGTTGTTTATGGACATAACAAAGCTTGGGATGATCAAGTAAGTAAATTTATGAGTTTTGGTTACTATTTTGAAACGGTATAATTTAATTGAATTTTTGGTTATTAAAATTGTGAACAGTGGATATTTTGGGTTGGACCATTTATTGGTGCTGCAATTGCTGCATTTTATCATC</genome_strand>
        <mrna_strand>TACATAACTGTCCTTACTGTTATTGGCTACAAAAGCCAGAGCTCCACTGATCAATGTGGTGGAGTTGGTATTCTTGGAATCGCTTGGGCATTTGGGGGTATGATCTTTGTACTTGTTTACTGTACTGCGGGTATTTCTGGTGGACACATTAACCCTGCTGTTACATTCGGCCTTTTCTTAGCTCGAAAAGTATCGTTGGTTCGAGCTATCATGTACATTGTAGCTCAATGTTTAGGAGCCATTTGTGGTTGTGGATTAGTAAAAGCTTTTCAAAAAGCTTATTATGTCAAATATGGCGGTGGTGCCAATACGTTGAACGATGGATATAGTACTGGTACTGGTTTGGGTGCGGAGATCATTGGAACATTCGTTCTTGTTTACACTGTTTTTGCTGCTACCGATCCTAAGAGGAACGCCAGAGACTCACACGTTCCT.....................................................................................GTACTTGCGCCTCTACCCATTGGATTTGCGGTGTTTATGGTTCACTTGGCTACAATTCCTGTAACTGGAACTGGAATTAATCCTGCAAGGAGTTTTGGTGCTGCTGTTGTTTATGGACATAACAAAGCTTGGGATGATCAA.................................................................................TGGATATTTTGGGTTGGACCATTTATTGGTGCTGCAATTGCTGCATTTTATCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E274316" ref_strand="+" ref_description="SGN-E274316 [cLEN-15-I23]">
      <seq>tacataactgtccttactgttattggctacaaaagccagagctccactgatcaatgtggtggagttggtattcttggaatcgcttgggcatttgggggtatgatctttgtacttgtttactgtactgcgggtatttctggtggacacattaaccctgctgttacattcggccttttcttagctcgaaaagtatcgttggttcgagctatcatgtacattgtagctcaatgtttaggagccatttgtggttgtggattagtaaaagcttttcaaaaagcttattatgtcaaatatggcggtggtgccaatacgttgaacgatggatatagtactggtactggtttgggtgcggagatcattggaacattcgttcttgtttacactgtttttgctgctaccgatcctaagaggaacgccagagactcacacgttcctgtacttgcgcctctacccattggatttgcggtgtttatggttcacttggctacaattcctgtaactggaactggaattaatcctgcaaggagttttggtgctgctgttgtttatggacataacaaagcttgggatgatcaatggatattttgggttggaccatttattggtgctgcaattgctgcattttatcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="+" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="1" stop="1118"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22" g_stop="456" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="435" r_length="435" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="457" i_stop="541" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="542" g_stop="682" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="576" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="683" i_stop="763" i_length="81">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="764" g_stop="818" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="631" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="+" ref_id="SGN-E274316" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E274316" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22" e_stop="456"/>
          <exon e_start="542" e_stop="682"/>
          <exon e_start="764" e_stop="818"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACATAACTGTCCTTACTGTTATTGGCTACAAAAGCCAGAGCTCCACTGATCAATGTGGTGGAGTTGGTATTCTTGGAATCGCTTGGGCATTTGGGGGTATGATCTTTGTACTTGTTTACTGTACTGCGGGTATTTCTGGTGGACACATTAACCCTGCTGTTACATTCGGCCTTTTCTTAGCTCGAAAAGTATCGTTGGTTCGAGCTATCATGTACATTGTAGCTCAATGTTTAGGAGCCATTTGTGGTTGTGGATTAGTAAAAGCTTTTCAAAAAGCTTATTATGTCAAATATGGCGGTGGTGCCAATACGTTGAACGATGGATATAGTACTGGTACTGGTTTGGGTGCGGAGATCATTGGAACATTCGTTCTTGTTTACACTGTTTTTGCTGCTACCGATCCTAAGAGGAACGCCAGAGACTCACACGTTCCTGTAAGTATAATTTTCATATACATAAATATAAAAATTTAATGATTGTTCCGTTCAATTAAACTTCAATTCCGATCCTTTTTTTAAGGTACTTGCGCCTCTACCCATTGGATTTGCGGTGTTTATGGTTCACTTGGCTACAATTCCTGTAACTGGAACTGGAATTAATCCTGCAAGGAGTTTTGGTGCTGCTGTTGTTTATGGACATAACAAAGCTTGGGATGATCAAGTAAGTAAATTTATGAGTTTTGGTTACTATTTTGAAACGGTATAATTTAATTGAATTTTTGGTTATTAAAATTGTGAACAGTGGATATTTTGGGTTGGACCATTTATTGGTGCTGCAATTGCTGCATTTTATCATC</genome_strand>
        <mrna_strand>TACATAACTGTCCTTACTGTTATTGGCTACAAAAGCCAGAGCTCCACTGATCAATGTGGTGGAGTTGGTATTCTTGGAATCGCTTGGGCATTTGGGGGTATGATCTTTGTACTTGTTTACTGTACTGCGGGTATTTCTGGTGGACACATTAACCCTGCTGTTACATTCGGCCTTTTCTTAGCTCGAAAAGTATCGTTGGTTCGAGCTATCATGTACATTGTAGCTCAATGTTTAGGAGCCATTTGTGGTTGTGGATTAGTAAAAGCTTTTCAAAAAGCTTATTATGTCAAATATGGCGGTGGTGCCAATACGTTGAACGATGGATATAGTACTGGTACTGGTTTGGGTGCGGAGATCATTGGAACATTCGTTCTTGTTTACACTGTTTTTGCTGCTACCGATCCTAAGAGGAACGCCAGAGACTCACACGTTCCT.....................................................................................GTACTTGCGCCTCTACCCATTGGATTTGCGGTGTTTATGGTTCACTTGGCTACAATTCCTGTAACTGGAACTGGAATTAATCCTGCAAGGAGTTTTGGTGCTGCTGTTGTTTATGGACATAACAAAGCTTGGGATGATCAA.................................................................................TGGATATTTTGGGTTGGACCATTTATTGGTGCTGCAATTGCTGCATTTTATCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E274321" ref_strand="+" ref_description="SGN-E274321 [cLEN-15-K23]">
      <seq>tacataactgtccttactgttattggctacaaaagccagagctccactgatcaatgtggtggagttggtattcttggaatcgcttgggcatttgggggtatgatctttgtacttgtttactgtactgcgggtatttctggtggacacattaaccctgctgttacattcggccttttcttagctcgaaaagtatcgttggttcgagctatcatgtacattgtagctcaatgtttaggagccatttgtggttgtggattagtaaaagcttttcaaaaagcttattatgtcaaatatggcggtggtgccaatacgttgaacgatggatatagtactggtactggtttgggtgcggagatcattggaacattcgttcttgtttacactgtttttgctgctaccgatcctaagaggaacgccagagactcacacgttcctgtacttgcgcctctacccattggatttgcggtgtttatggttcacttggctacaattcctgtaactggaactggaattaatcctgcaaggagttttggtgctgctgttgtttatggacataac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="+" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="1" stop="964"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22" g_stop="456" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="435" r_length="435" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="457" i_stop="541" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="542" g_stop="664" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="558" r_length="123" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="+" ref_id="SGN-E274321" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E274321" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22" e_stop="456"/>
          <exon e_start="542" e_stop="664"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACATAACTGTCCTTACTGTTATTGGCTACAAAAGCCAGAGCTCCACTGATCAATGTGGTGGAGTTGGTATTCTTGGAATCGCTTGGGCATTTGGGGGTATGATCTTTGTACTTGTTTACTGTACTGCGGGTATTTCTGGTGGACACATTAACCCTGCTGTTACATTCGGCCTTTTCTTAGCTCGAAAAGTATCGTTGGTTCGAGCTATCATGTACATTGTAGCTCAATGTTTAGGAGCCATTTGTGGTTGTGGATTAGTAAAAGCTTTTCAAAAAGCTTATTATGTCAAATATGGCGGTGGTGCCAATACGTTGAACGATGGATATAGTACTGGTACTGGTTTGGGTGCGGAGATCATTGGAACATTCGTTCTTGTTTACACTGTTTTTGCTGCTACCGATCCTAAGAGGAACGCCAGAGACTCACACGTTCCTGTAAGTATAATTTTCATATACATAAATATAAAAATTTAATGATTGTTCCGTTCAATTAAACTTCAATTCCGATCCTTTTTTTAAGGTACTTGCGCCTCTACCCATTGGATTTGCGGTGTTTATGGTTCACTTGGCTACAATTCCTGTAACTGGAACTGGAATTAATCCTGCAAGGAGTTTTGGTGCTGCTGTTGTTTATGGACATAAC</genome_strand>
        <mrna_strand>TACATAACTGTCCTTACTGTTATTGGCTACAAAAGCCAGAGCTCCACTGATCAATGTGGTGGAGTTGGTATTCTTGGAATCGCTTGGGCATTTGGGGGTATGATCTTTGTACTTGTTTACTGTACTGCGGGTATTTCTGGTGGACACATTAACCCTGCTGTTACATTCGGCCTTTTCTTAGCTCGAAAAGTATCGTTGGTTCGAGCTATCATGTACATTGTAGCTCAATGTTTAGGAGCCATTTGTGGTTGTGGATTAGTAAAAGCTTTTCAAAAAGCTTATTATGTCAAATATGGCGGTGGTGCCAATACGTTGAACGATGGATATAGTACTGGTACTGGTTTGGGTGCGGAGATCATTGGAACATTCGTTCTTGTTTACACTGTTTTTGCTGCTACCGATCCTAAGAGGAACGCCAGAGACTCACACGTTCCT.....................................................................................GTACTTGCGCCTCTACCCATTGGATTTGCGGTGTTTATGGTTCACTTGGCTACAATTCCTGTAACTGGAACTGGAATTAATCCTGCAAGGAGTTTTGGTGCTGCTGTTGTTTATGGACATAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E283470" ref_strand="+" ref_description="SGN-E283470 [cLER-12-D18]">
      <seq>cttactgttattggctacaaaagccagagctccactgatcaatgtggtggagttggtgttcttggaatcgcttgggcatttgggggtatgatctttgtacttgtttactgtactgcgggtatttctggtggacacattaaccctgctgttacatttggtcttttcttagctcgaaaagtatcgttggttcgagctatcatgtacattgtagctcaatgtttaggagccatttgtggttgtggattagtaaaagcttttcaaaaagcttattatgtcaaatatggcggtggtgccaatacgttgaacgatggatatagtactggtactggtttgggtgcggagatcattggaacattcgttcttgtttacactgtttttgctgctaccgatcctaagaggaacgccagagactcacacgttcctgtacttgcgcctctacccattggatttgcggtgtttatggttcacttggctacaattcctgtaactggaactggaattaatcctgcaaggagttttggtgctgctgttgtttatggacataacaaagcttgggatgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="+" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="1" stop="980"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34" g_stop="456" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="423" r_length="423" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="457" i_stop="541" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="542" g_stop="680" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="562" r_length="139" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="+" ref_id="SGN-E283470" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283470" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34" e_stop="456"/>
          <exon e_start="542" e_stop="680"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTACTGTTATTGGCTACAAAAGCCAGAGCTCCACTGATCAATGTGGTGGAGTTGGTATTCTTGGAATCGCTTGGGCATTTGGGGGTATGATCTTTGTACTTGTTTACTGTACTGCGGGTATTTCTGGTGGACACATTAACCCTGCTGTTACATTCGGCCTTTTCTTAGCTCGAAAAGTATCGTTGGTTCGAGCTATCATGTACATTGTAGCTCAATGTTTAGGAGCCATTTGTGGTTGTGGATTAGTAAAAGCTTTTCAAAAAGCTTATTATGTCAAATATGGCGGTGGTGCCAATACGTTGAACGATGGATATAGTACTGGTACTGGTTTGGGTGCGGAGATCATTGGAACATTCGTTCTTGTTTACACTGTTTTTGCTGCTACCGATCCTAAGAGGAACGCCAGAGACTCACACGTTCCTGTAAGTATAATTTTCATATACATAAATATAAAAATTTAATGATTGTTCCGTTCAATTAAACTTCAATTCCGATCCTTTTTTTAAGGTACTTGCGCCTCTACCCATTGGATTTGCGGTGTTTATGGTTCACTTGGCTACAATTCCTGTAACTGGAACTGGAATTAATCCTGCAAGGAGTTTTGGTGCTGCTGTTGTTTATGGACATAACAAAGCTTGGGATGATC</genome_strand>
        <mrna_strand>CTTACTGTTATTGGCTACAAAAGCCAGAGCTCCACTGATCAATGTGGTGGAGTTGGTGTTCTTGGAATCGCTTGGGCATTTGGGGGTATGATCTTTGTACTTGTTTACTGTACTGCGGGTATTTCTGGTGGACACATTAACCCTGCTGTTACATTTGGTCTTTTCTTAGCTCGAAAAGTATCGTTGGTTCGAGCTATCATGTACATTGTAGCTCAATGTTTAGGAGCCATTTGTGGTTGTGGATTAGTAAAAGCTTTTCAAAAAGCTTATTATGTCAAATATGGCGGTGGTGCCAATACGTTGAACGATGGATATAGTACTGGTACTGGTTTGGGTGCGGAGATCATTGGAACATTCGTTCTTGTTTACACTGTTTTTGCTGCTACCGATCCTAAGAGGAACGCCAGAGACTCACACGTTCCT.....................................................................................GTACTTGCGCCTCTACCCATTGGATTTGCGGTGTTTATGGTTCACTTGGCTACAATTCCTGTAACTGGAACTGGAATTAATCCTGCAAGGAGTTTTGGTGCTGCTGTTGTTTATGGACATAACAAAGCTTGGGATGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E231488" ref_strand="+" ref_description="SGN-E231488 [cLED-4-K4]">
      <seq>agagctccactgatcaatgtggtggagttggtattcttggaatcgcttgggcatttgggggtatgatctttgtacttgtttactgtactgcgggtatttctggtggacacattaaccctgctgttacattcggccttttcttagctcgaaaagtatcgttggttcgagctatcatgtacattgtagctcaatgtttaggagccatttgtggttgtggattagtaaaagcttttcaaaaagcttattatgtcaaatatggcggtggtgccaatacgttgaacgatggatatagtactggtactggtttgggtgcggagatcattggaacattcgttcttgtttacactgtttttgctgctaccgatcctaagaggaacgccagagactcacacgttcctgtacttgcgcctctacccattggatttgcggtgtttatggttcacttggctacaattcctgttactggaactggaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="+" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="1" stop="919"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59" g_stop="456" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="398" r_length="398" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="457" i_stop="541" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="542" g_stop="619" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="476" r_length="78" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="+" ref_id="SGN-E231488" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231488" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59" e_stop="456"/>
          <exon e_start="542" e_stop="619"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGCTCCACTGATCAATGTGGTGGAGTTGGTATTCTTGGAATCGCTTGGGCATTTGGGGGTATGATCTTTGTACTTGTTTACTGTACTGCGGGTATTTCTGGTGGACACATTAACCCTGCTGTTACATTCGGCCTTTTCTTAGCTCGAAAAGTATCGTTGGTTCGAGCTATCATGTACATTGTAGCTCAATGTTTAGGAGCCATTTGTGGTTGTGGATTAGTAAAAGCTTTTCAAAAAGCTTATTATGTCAAATATGGCGGTGGTGCCAATACGTTGAACGATGGATATAGTACTGGTACTGGTTTGGGTGCGGAGATCATTGGAACATTCGTTCTTGTTTACACTGTTTTTGCTGCTACCGATCCTAAGAGGAACGCCAGAGACTCACACGTTCCTGTAAGTATAATTTTCATATACATAAATATAAAAATTTAATGATTGTTCCGTTCAATTAAACTTCAATTCCGATCCTTTTTTTAAGGTACTTGCGCCTCTACCCATTGGATTTGCGGTGTTTATGGTTCACTTGGCTACAATTCCTGTAACTGGAACTGGAATT</genome_strand>
        <mrna_strand>AGAGCTCCACTGATCAATGTGGTGGAGTTGGTATTCTTGGAATCGCTTGGGCATTTGGGGGTATGATCTTTGTACTTGTTTACTGTACTGCGGGTATTTCTGGTGGACACATTAACCCTGCTGTTACATTCGGCCTTTTCTTAGCTCGAAAAGTATCGTTGGTTCGAGCTATCATGTACATTGTAGCTCAATGTTTAGGAGCCATTTGTGGTTGTGGATTAGTAAAAGCTTTTCAAAAAGCTTATTATGTCAAATATGGCGGTGGTGCCAATACGTTGAACGATGGATATAGTACTGGTACTGGTTTGGGTGCGGAGATCATTGGAACATTCGTTCTTGTTTACACTGTTTTTGCTGCTACCGATCCTAAGAGGAACGCCAGAGACTCACACGTTCCT.....................................................................................GTACTTGCGCCTCTACCCATTGGATTTGCGGTGTTTATGGTTCACTTGGCTACAATTCCTGTTACTGGAACTGGAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E240085" ref_strand="+" ref_description="SGN-E240085 [cLED-32-A20]">
      <seq>atcgcttgggcatttgggggtatgatctttgtacttgtttactgtactgcgggtatttctggtggacacattaaccctgctgttacattcggccttttcttagctcgaaaagtatcgttggttcgagctatcatgtacattgtagctcaatgtttaggagccatttgtggttgtggattagtaaaagcttttcaaaaagcttattatgtcaaatatggcggtggtgccaatacgttgaacgatggatatagtactggtactggattgggtgcggagatcattgtaacattcgatcttgattacactgttgttgctgctaccgatcctaagaggaacgccagagactcacacgttcctgtacttgcgcctctacccattggatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="+" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="1" stop="869"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100" g_stop="456" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="357" r_length="357" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="457" i_stop="541" i_length="85">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.916" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="542" g_stop="569" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="385" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="+" ref_id="SGN-E240085" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240085" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100" e_stop="456"/>
          <exon e_start="542" e_stop="569"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGCTTGGGCATTTGGGGGTATGATCTTTGTACTTGTTTACTGTACTGCGGGTATTTCTGGTGGACACATTAACCCTGCTGTTACATTCGGCCTTTTCTTAGCTCGAAAAGTATCGTTGGTTCGAGCTATCATGTACATTGTAGCTCAATGTTTAGGAGCCATTTGTGGTTGTGGATTAGTAAAAGCTTTTCAAAAAGCTTATTATGTCAAATATGGCGGTGGTGCCAATACGTTGAACGATGGATATAGTACTGGTACTGGTTTGGGTGCGGAGATCATTGGAACATTCGTTCTTGTTTACACTGTTTTTGCTGCTACCGATCCTAAGAGGAACGCCAGAGACTCACACGTTCCTGTAAGTATAATTTTCATATACATAAATATAAAAATTTAATGATTGTTCCGTTCAATTAAACTTCAATTCCGATCCTTTTTTTAAGGTACTTGCGCCTCTACCCATTGGATTTG</genome_strand>
        <mrna_strand>ATCGCTTGGGCATTTGGGGGTATGATCTTTGTACTTGTTTACTGTACTGCGGGTATTTCTGGTGGACACATTAACCCTGCTGTTACATTCGGCCTTTTCTTAGCTCGAAAAGTATCGTTGGTTCGAGCTATCATGTACATTGTAGCTCAATGTTTAGGAGCCATTTGTGGTTGTGGATTAGTAAAAGCTTTTCAAAAAGCTTATTATGTCAAATATGGCGGTGGTGCCAATACGTTGAACGATGGATATAGTACTGGTACTGGATTGGGTGCGGAGATCATTGTAACATTCGATCTTGATTACACTGTTGTTGCTGCTACCGATCCTAAGAGGAACGCCAGAGACTCACACGTTCCT.....................................................................................GTACTTGCGCCTCTACCCATTGGATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E233689" ref_strand="+" ref_description="SGN-E233689 [cLED-14-F9]">
      <seq>gtacattgtagctcaatgtttaggagccatttgtggttgtggattagtaaaagcttttcaaaaagcttattatgtcaaatatggcggtggtgccaatacgttgaacgatggatatagtactggtactggtttgggtgcggagatcattggaacattcgttcttgtttacactgtttttgctgctaccgatcctaagaggaacgcctgagactcacacgttcctgtacttgcgcctctacccattggatttgcggtgtttatggttcacttggctacaattcctgtaactggaactggaattaatcctgcaaggagttttggtgctgctgttgtttatggacataacaaagcttgggatgatcaatggatattttgggttggaccatttattggtgctgcaattgctgcattttatcatcagtttattttgagggctggagctgttaaagcacttggttcattcaagagcaatgcttaattagtacaattatcatgaagaattgaaaattgtatatataagtatttgaaaagaaaaaaaagtctctttgaattatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="+" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="1" stop="1223"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="234" g_stop="456" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="457" i_stop="541" i_length="85">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="542" g_stop="682" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="364" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="683" i_stop="763" i_length="81">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="764" g_stop="913" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="514" r_length="150" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="527" polyA_stop="539"/>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="+" ref_id="SGN-E233689" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="0.926" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233689" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="234" e_stop="456"/>
          <exon e_start="542" e_stop="682"/>
          <exon e_start="764" e_stop="913"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTACATTGTAGCTCAATGTTTAGGAGCCATTTGTGGTTGTGGATTAGTAAAAGCTTTTCAAAAAGCTTATTATGTCAAATATGGCGGTGGTGCCAATACGTTGAACGATGGATATAGTACTGGTACTGGTTTGGGTGCGGAGATCATTGGAACATTCGTTCTTGTTTACACTGTTTTTGCTGCTACCGATCCTAAGAGGAACGCCAGAGACTCACACGTTCCTGTAAGTATAATTTTCATATACATAAATATAAAAATTTAATGATTGTTCCGTTCAATTAAACTTCAATTCCGATCCTTTTTTTAAGGTACTTGCGCCTCTACCCATTGGATTTGCGGTGTTTATGGTTCACTTGGCTACAATTCCTGTAACTGGAACTGGAATTAATCCTGCAAGGAGTTTTGGTGCTGCTGTTGTTTATGGACATAACAAAGCTTGGGATGATCAAGTAAGTAAATTTATGAGTTTTGGTTACTATTTTGAAACGGTATAATTTAATTGAATTTTTGGTTATTAAAATTGTGAACAGTGGATATTTTGGGTTGGACCATTTATTGGTGCTGCAATTGCTGCATTTTATCATCAGTTTATTTTGAGAGCTGGAGCTGTTAAAGCACTTGGTTCATTCAGGAGCAATGCTTAATTAGTACAATTATCATGAAGAATTGAAAATTGTACA</genome_strand>
        <mrna_strand>GTACATTGTAGCTCAATGTTTAGGAGCCATTTGTGGTTGTGGATTAGTAAAAGCTTTTCAAAAAGCTTATTATGTCAAATATGGCGGTGGTGCCAATACGTTGAACGATGGATATAGTACTGGTACTGGTTTGGGTGCGGAGATCATTGGAACATTCGTTCTTGTTTACACTGTTTTTGCTGCTACCGATCCTAAGAGGAACGCCTGAGACTCACACGTTCCT.....................................................................................GTACTTGCGCCTCTACCCATTGGATTTGCGGTGTTTATGGTTCACTTGGCTACAATTCCTGTAACTGGAACTGGAATTAATCCTGCAAGGAGTTTTGGTGCTGCTGTTGTTTATGGACATAACAAAGCTTGGGATGATCAA.................................................................................TGGATATTTTGGGTTGGACCATTTATTGGTGCTGCAATTGCTGCATTTTATCATCAGTTTATTTTGAGGGCTGGAGCTGTTAAAGCACTTGGTTCATTCAAGAGCAATGCTTAATTAGTACAATTATCATGAAGAATTGAAAATTGTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E319456" ref_strand="+" ref_description="SGN-E319456 [cTOB-15-N12]">
      <seq>tttgtggttgtggattagtaaaagcttttcaaaaagcttattatgtcaaatatggcggtggtgccaatacgttgaacgatggatatagtactggtactggtttgggtgcggagatcattggaacattcgttcttgtttacactgtttttgctgctaccgatcctaagaggaacgccagagactcacacgttcctgtacttgcgcctctacccattggatttgcggtgtttatggttcacttggctacaattcctgtaactggaactggaattaatcctgcaaggagttttggtgctgctgttgtttatggacataacaaagcttgggatgatcaatggatattttgggttggaccatttattggtgctgcaattgctgcattttatcatcagtttattttgagggctggagctgttaaagcacttggttcattcaggagcaatgcttaattagtacaattatcatgaagaattgaaaattgtatatataagtatttgagaagaaaaaaaaagtctctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="+" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="1" stop="1223"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="263" g_stop="456" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="457" i_stop="541" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="542" g_stop="682" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="335" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="683" i_stop="763" i_length="81">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="764" g_stop="913" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="485" r_length="150" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="+" ref_id="SGN-E319456" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319456" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="263" e_stop="456"/>
          <exon e_start="542" e_stop="682"/>
          <exon e_start="764" e_stop="913"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTGGTTGTGGATTAGTAAAAGCTTTTCAAAAAGCTTATTATGTCAAATATGGCGGTGGTGCCAATACGTTGAACGATGGATATAGTACTGGTACTGGTTTGGGTGCGGAGATCATTGGAACATTCGTTCTTGTTTACACTGTTTTTGCTGCTACCGATCCTAAGAGGAACGCCAGAGACTCACACGTTCCTGTAAGTATAATTTTCATATACATAAATATAAAAATTTAATGATTGTTCCGTTCAATTAAACTTCAATTCCGATCCTTTTTTTAAGGTACTTGCGCCTCTACCCATTGGATTTGCGGTGTTTATGGTTCACTTGGCTACAATTCCTGTAACTGGAACTGGAATTAATCCTGCAAGGAGTTTTGGTGCTGCTGTTGTTTATGGACATAACAAAGCTTGGGATGATCAAGTAAGTAAATTTATGAGTTTTGGTTACTATTTTGAAACGGTATAATTTAATTGAATTTTTGGTTATTAAAATTGTGAACAGTGGATATTTTGGGTTGGACCATTTATTGGTGCTGCAATTGCTGCATTTTATCATCAGTTTATTTTGAGAGCTGGAGCTGTTAAAGCACTTGGTTCATTCAGGAGCAATGCTTAATTAGTACAATTATCATGAAGAATTGAAAATTGTACA</genome_strand>
        <mrna_strand>TTTGTGGTTGTGGATTAGTAAAAGCTTTTCAAAAAGCTTATTATGTCAAATATGGCGGTGGTGCCAATACGTTGAACGATGGATATAGTACTGGTACTGGTTTGGGTGCGGAGATCATTGGAACATTCGTTCTTGTTTACACTGTTTTTGCTGCTACCGATCCTAAGAGGAACGCCAGAGACTCACACGTTCCT.....................................................................................GTACTTGCGCCTCTACCCATTGGATTTGCGGTGTTTATGGTTCACTTGGCTACAATTCCTGTAACTGGAACTGGAATTAATCCTGCAAGGAGTTTTGGTGCTGCTGTTGTTTATGGACATAACAAAGCTTGGGATGATCAA.................................................................................TGGATATTTTGGGTTGGACCATTTATTGGTGCTGCAATTGCTGCATTTTATCATCAGTTTATTTTGAGGGCTGGAGCTGTTAAAGCACTTGGTTCATTCAGGAGCAATGCTTAATTAGTACAATTATCATGAAGAATTGAAAATTGTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E338088" ref_strand="+" ref_description="SGN-E338088 [cTOE-13-C9]">
      <seq>atcattggaacattcgttcttgtttacactgtttttgctgctaccgatcctaagaggaacgccagagactcacacgttcctgtacttgcgcctctacccattggatttgcggtgtttatggttcacttggctacaattcctgtaactggaactggaattaatcctgcaaggagttttggtgctgctgttgtttatggacataacaaagcttgggatgatcaatggatattttgggttggaccatttattggtgctgcaattgctgcattttatcatcagtttattttgagagctggagctgttaaagcacttggttcattcaggagcaatgcttaattagtacaattatcatgaagaattgaaaattgtacattatgtttttttttttaatgttattagagttggttagcatttgttttagatttgttaaacaatgtcattactacttttttctttttaatttggttccttttttttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="+" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="76" stop="1321"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="376" g_stop="456" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="457" i_stop="541" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="542" g_stop="682" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="222" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="683" i_stop="763" i_length="81">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="764" g_stop="1021" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="480" r_length="258" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="+" ref_id="SGN-E338088" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338088" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="376" e_stop="456"/>
          <exon e_start="542" e_stop="682"/>
          <exon e_start="764" e_stop="1021"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATTGGAACATTCGTTCTTGTTTACACTGTTTTTGCTGCTACCGATCCTAAGAGGAACGCCAGAGACTCACACGTTCCTGTAAGTATAATTTTCATATACATAAATATAAAAATTTAATGATTGTTCCGTTCAATTAAACTTCAATTCCGATCCTTTTTTTAAGGTACTTGCGCCTCTACCCATTGGATTTGCGGTGTTTATGGTTCACTTGGCTACAATTCCTGTAACTGGAACTGGAATTAATCCTGCAAGGAGTTTTGGTGCTGCTGTTGTTTATGGACATAACAAAGCTTGGGATGATCAAGTAAGTAAATTTATGAGTTTTGGTTACTATTTTGAAACGGTATAATTTAATTGAATTTTTGGTTATTAAAATTGTGAACAGTGGATATTTTGGGTTGGACCATTTATTGGTGCTGCAATTGCTGCATTTTATCATCAGTTTATTTTGAGAGCTGGAGCTGTTAAAGCACTTGGTTCATTCAGGAGCAATGCTTAATTAGTACAATTATCATGAAGAATTGAAAATTGTACATTATGTTTTTTTTTTTAATGTTATTAGAGTTGTTTAGCATTTGTTTTAGATTTGTTAAACAATGTCATTACTACTTTTTTCTTTTTAATTTGTTTCCTTTTTTTTTTG</genome_strand>
        <mrna_strand>ATCATTGGAACATTCGTTCTTGTTTACACTGTTTTTGCTGCTACCGATCCTAAGAGGAACGCCAGAGACTCACACGTTCCT.....................................................................................GTACTTGCGCCTCTACCCATTGGATTTGCGGTGTTTATGGTTCACTTGGCTACAATTCCTGTAACTGGAACTGGAATTAATCCTGCAAGGAGTTTTGGTGCTGCTGTTGTTTATGGACATAACAAAGCTTGGGATGATCAA.................................................................................TGGATATTTTGGGTTGGACCATTTATTGGTGCTGCAATTGCTGCATTTTATCATCAGTTTATTTTGAGAGCTGGAGCTGTTAAAGCACTTGGTTCATTCAGGAGCAATGCTTAATTAGTACAATTATCATGAAGAATTGAAAATTGTACATTATGTTTTTTTTTTTAATGTTATTAGAGTTGGTTAGCATTTGTTTTAGATTTGTTAAACAATGTCATTACTACTTTTTTCTTTTTAATTTGGTTCCTTTTTTTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E334797" ref_strand="+" ref_description="SGN-E334797 [cTOE-3-J10]">
      <seq>atcattggaacattcttcttgtttacactgttttgctgctaccgatcctaaaggaacnccagagactcacacgttcctgtacttgccctgtacccattggatttgcggtgttatggttcacttggctacaattcctgtaactggaactggaattaatcctgcaaggagtttggtgctgtgttgttatggacataacaaagcttgggatatcaatggatattagggttggacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="+" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="76" stop="989"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="376" g_stop="456" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="457" i_stop="541" i_length="85">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.916" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="542" g_stop="682" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="213" r_length="135" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="683" i_stop="763" i_length="81">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.930" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="764" g_stop="783" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="232" r_length="19" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="+" ref_id="SGN-E334797" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>242</cumulative_length_of_scored_exons>
        <coverage percentage="1.043" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E334797" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="376" e_stop="456"/>
          <exon e_start="542" e_stop="682"/>
          <exon e_start="764" e_stop="783"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATTGGAACATTCGTTCTTGTTTACACTGTTTTTGCTGCTACCGATCCTAAGAGGAACGCCAGAGACTCACACGTTCCTGTAAGTATAATTTTCATATACATAAATATAAAAATTTAATGATTGTTCCGTTCAATTAAACTTCAATTCCGATCCTTTTTTTAAGGTACTTGCGCCTCTACCCATTGGATTTGCGGTGTTTATGGTTCACTTGGCTACAATTCCTGTAACTGGAACTGGAATTAATCCTGCAAGGAGTTTTGGTGCTGCTGTTGTTTATGGACATAACAAAGCTTGGGATGATCAAGTAAGTAAATTTATGAGTTTTGGTTACTATTTTGAAACGGTATAATTTAATTGAATTTTTGGTTATTAAAATTGTGAACAGTGGATATTTTGGGTTGGACC</genome_strand>
        <mrna_strand>ATCATTGGAACATTC-TTCTTGTTTACACTG-TTTTGCTGCTACCGATCCTAA-AGGAACNCCAGAGACTCACACGTTCCT.....................................................................................GTACTTGC-CCTGTACCCATTGGATTTGCGGTG-TTATGGTTCACTTGGCTACAATTCCTGTAACTGGAACTGGAATTAATCCTGCAAGGAG-TTTGGTGCTG-TGTTG-TTATGGACATAACAAAGCTTGGGAT-ATCAA.................................................................................TGGATA-TTAGGGTTGGACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E229809" ref_strand="+" ref_description="SGN-E229809 [cLEL-33-F14](-)">
      <seq>ctctacccattggaatttgcggtgtttatggttcacttggctacaattcctgtaactggaactggaattaatcctgcaaggagttttggtgctgctgttgtttatggacataacaaagcttgggatgatcaatggatattttgggttggaccatttattggtgctgcaattgctgcattttatcatcagtttattttgagagctggagctgttaaagcacttggttcattcaggagcaatgcttaattagtacaattatcatgaagaattgaaaattgtacattatgttttttttttttaatgttattagagttgtttagcatttgttttagatttgttaaacaatgtcattactacttttttctttttaatttgtttcctttttttttggtgtgtgtttctgtaatttttcactatgctttgttttgagtatctaaataatggaattatgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="+" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="252" stop="1387"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="552" g_stop="682" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="683" i_stop="763" i_length="81">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="764" g_stop="1088" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="457" r_length="325" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="458" polyA_stop="469"/>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="+" ref_id="SGN-E229809" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E229809" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="552" e_stop="682"/>
          <exon e_start="764" e_stop="1088"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTACCCATTGG-ATTTGCGGTGTTTATGGTTCACTTGGCTACAATTCCTGTAACTGGAACTGGAATTAATCCTGCAAGGAGTTTTGGTGCTGCTGTTGTTTATGGACATAACAAAGCTTGGGATGATCAAGTAAGTAAATTTATGAGTTTTGGTTACTATTTTGAAACGGTATAATTTAATTGAATTTTTGGTTATTAAAATTGTGAACAGTGGATATTTTGGGTTGGACCATTTATTGGTGCTGCAATTGCTGCATTTTATCATCAGTTTATTTTGAGAGCTGGAGCTGTTAAAGCACTTGGTTCATTCAGGAGCAATGCTTAATTAGTACAATTATCATGAAGAATTGAAAATTGTACATTATG-TTTTTTTTTTTAATGTTATTAGAGTTGTTTAGCATTTGTTTTAGATTTGTTAAACAATGTCATTACTACTTTTTTCTTTTTAATTTGTTTCCTTTTTTTTTTGGTGTGTGTTTCTGTAATTTTTCACTATGCTTTGTTTTGAGTATCTAAATAATGGAATTATGAACAAG</genome_strand>
        <mrna_strand>CTCTACCCATTGGAATTTGCGGTGTTTATGGTTCACTTGGCTACAATTCCTGTAACTGGAACTGGAATTAATCCTGCAAGGAGTTTTGGTGCTGCTGTTGTTTATGGACATAACAAAGCTTGGGATGATCAA.................................................................................TGGATATTTTGGGTTGGACCATTTATTGGTGCTGCAATTGCTGCATTTTATCATCAGTTTATTTTGAGAGCTGGAGCTGTTAAAGCACTTGGTTCATTCAGGAGCAATGCTTAATTAGTACAATTATCATGAAGAATTGAAAATTGTACATTATGTTTTTTTTTTTTAATGTTATTAGAGTTGTTTAGCATTTGTTTTAGATTTGTTAAACAATGTCATTACTACTTTTTTCTTTTTAATTTGTTTCC-TTTTTTTTTGGTGTGTGTTTCTGTAATTTTTCACTATGCTTTGTTTTGAGTATCTAAATAATGGAATTATGAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E309316" ref_strand="+" ref_description="SGN-E309316 [cLEY-22-H20]">
      <seq>cacttggttcattcaggagcaatgcttaattagtacaattatcatgaagaattgaaaattgtacattatgtttttttttttaatgttattagagttgtttagcatttgttttagatttgttaaacaatgtcattactacttttttctttttaatttgtttccttttttttttggtgtgtgtttctgtaatttttcactatgctttgttttgagtatctaaataatggaattatgaacaaggctaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="+" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="549" stop="1392"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="849" g_stop="1091" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="243" r_length="243" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="244" polyA_stop="266"/>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="+" ref_id="SGN-E309316" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>243</cumulative_length_of_scored_exons>
        <coverage percentage="0.914" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309316" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="849" e_stop="1091"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTGGTTCATTCAGGAGCAATGCTTAATTAGTACAATTATCATGAAGAATTGAAAATTGTACATTATGTTTTTTTTTTTAATGTTATTAGAGTTGTTTAGCATTTGTTTTAGATTTGTTAAACAATGTCATTACTACTTTTTTCTTTTTAATTTGTTTCCTTTTTTTTTTGGTGTGTGTTTCTGTAATTTTTCACTATGCTTTGTTTTGAGTATCTAAATAATGGAATTATGAACAAGGCT</genome_strand>
        <mrna_strand>CACTTGGTTCATTCAGGAGCAATGCTTAATTAGTACAATTATCATGAAGAATTGAAAATTGTACATTATGTTTTTTTTTTTAATGTTATTAGAGTTGTTTAGCATTTGTTTTAGATTTGTTAAACAATGTCATTACTACTTTTTTCTTTTTAATTTGTTTCCTTTTTTTTTTGGTGTGTGTTTCTGTAATTTTTCACTATGCTTTGTTTTGAGTATCTAAATAATGGAATTATGAACAAGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E218272" ref_strand="+" ref_description="SGN-E218272 [cLEL-23-D20](-)">
      <seq>cttaaacttgctgaaattgcagagcaggcgttgcgggaaaatcctgctgagcgccctgatatgtcacagttggcacttctgttagagcagctagtgaaggatgtaatgatatcatagcctttgtgtcggagttttatattaagtttttggtggatcgaaatttttcagaaaacaaaatcagaggatagcatattggtgagtaacgacgctcttctgcaattgtacatttctatgagctccttgtaaattttgtgcttatattttttatttgccacattcttggacaaatgtcaacaataaattttcaactttttcttatagcaatgaaacctgtgatgctgcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="+" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="13205" stop="14152"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13505" g_stop="13851" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="347" r_length="347" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="348" polyA_stop="360"/>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="+" ref_id="SGN-E218272" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>347</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E218272" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13505" e_stop="13851"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAAACTTGCTGAAATTGCAGAGCAGGCGTTGCGGGAAAATCCTGCTGAGCGCCCTGATATGTCACAGTTGGCACTTCTGTTAGAGCAGCTAGTGAAGGATGTAATGATATCATAGACTTTGTGTCGGAGTTTTATATTAAGTTTTTGGTGGATCGAAATTTTTCAGAAAACAAAATCAGAGGATAGCATATTGGTGAGTAACGACGCTCTTCTGCAATTGTACATTTCTATGAGCTCCTTGTAAATTTTGTGCTTATATTTTTTATTTGCCACATTCTTGGACAAATGTCAACAATAAATTTTCAACTTTTTCTTATAGCAATGAAACCTGTGATGCTGCACCAA</genome_strand>
        <mrna_strand>CTTAAACTTGCTGAAATTGCAGAGCAGGCGTTGCGGGAAAATCCTGCTGAGCGCCCTGATATGTCACAGTTGGCACTTCTGTTAGAGCAGCTAGTGAAGGATGTAATGATATCATAGCCTTTGTGTCGGAGTTTTATATTAAGTTTTTGGTGGATCGAAATTTTTCAGAAAACAAAATCAGAGGATAGCATATTGGTGAGTAACGACGCTCTTCTGCAATTGTACATTTCTATGAGCTCCTTGTAAATTTTGTGCTTATATTTTTTATTTGCCACATTCTTGGACAAATGTCAACAATAAATTTTCAACTTTTTCTTATAGCAATGAAACCTGTGATGCTGCAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E397108" ref_strand="+" ref_description="SGN-E397108 [TUS-44-L22](-)">
      <seq>atacgccatcagtggacactttacacgcaagtcagatgtttatagctttggagtcgtgttactagaaatagtcagcggttcaccagtagttgcattcgacattactcgaggagagcatttccttgttaacaaggcatgggaaatgtacaatgctgaccaactgttagagctagtagaccctgttttggatagagaacttctgaatgacgatgaagctctccgattcttgaaggttggcctcctctgtgtgcaagagaacgccagcctccgccccaaaatgtccatggtcatcaagatgttgagtcgtgatggcgcgataatagttgatgaaatgaagattactcagcctgggattgttgctgatctaatggatgttaagataggcagaaaacactcttctcaaagctttttttctaaagcttctacaagcatgagcccaggaagccccttccaaatagttaatagaagaaaaagtaatagctagaaaatagtcgaggtacgcacaagctggttcagacatcacgattataaaaaaaaaatagaatatacttgtacaaagagtatattgtgcacacacatagatacacttgcactaagtttgatcacttttttttttaattgttagatcagttgtatatcaatgtgagcagctaggtctttaattttttcaaatttttttttggaatatttggttccatttgatgtaaaagctacctttaataacattttttttagtttttcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="-" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="22547" stop="20945"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22247" g_stop="22115" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22114" i_stop="21858" i_length="257">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21857" g_stop="21239" g_length="619"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="752" r_length="619" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="-" ref_id="SGN-E397108" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E397108" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22247" e_stop="22115"/>
          <exon e_start="21857" e_stop="21239"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACGCCATCAGTGGACACTTAACACGCAAGTCAGATGTTTATAGCTTTGGAGTCGTGTTACTAGAAATAGTCAGCGGTTCACCAGTAGTTGCATTCGACATTACTCGAGGAGAGCATTTCCTTGTTAACAAGGTACATTTTTATTACTTTTGACTTATGTGTAGTCTACGATTAGTTTCAAACAACACTACATATATAGATGCTTATATGAAACTTATCGCTATTCGATGAAAATATGTACTATTATTATTACTATTATCAATGATTGACTTGTAACAGTCTAAAAACCAAACAAGTGGGAACCATGATTTTGACTCTTAATATAATGATAGTATTAGTTTGTTGGCTTGATATGACATGAAAGTTGTCAACTTGTGTTGTGTTTTTAGGCATGGGAAATGTACAATGCTGACCAACTGTTAGAGCTAGTAGACCCTGTTTTGGATAGAGAACTTCTGAATGACGATGAAGCTCTCCGATTCTTGAAGGTTGGCCTCCTCTGTGTGCAAGAGAACGCCAGCCTCCGCCCCAAAATGTCCATGGTCATCAAGATGTTGAGTCGTGATGGCGCGATAATAGTTGATGAAATGAAGATTACTCAGCCTGGGATTGTTGCTGATCTAATGGATGTTAAGATAGGCAGAAAACACTCTTCTCAAAGCTTTTTTTCTAAAGCTTCTACAAGCATGAGCCCAGGAAGCCCCTTCCAAATAGTTAATAGAAGAAAAAGTAATAGCTAGAAAATAGTCGAGGTACGCACAAGCTGGTTCAGACATCACGATTATAAAAAAAAAATAGAATATACTTGTACAAAGAGTATATTGTGCACACACATAGATACACTTGCACTAAGTTTGATCACTTTTTTTTTTAATTGTTAGATCAGTTGTATATCAATGTGAGCAGCTAGGTCTTTAATTTTTTCAAATTTTTTTTTGGAATATTTGGTTCCATTTGATGTAAAAGCTACCTTTAATAACATTTTTTTTAGTTTTTCAATAATTGAGT</genome_strand>
        <mrna_strand>ATACGCCATCAGTGGACACTTTACACGCAAGTCAGATGTTTATAGCTTTGGAGTCGTGTTACTAGAAATAGTCAGCGGTTCACCAGTAGTTGCATTCGACATTACTCGAGGAGAGCATTTCCTTGTTAACAAG.................................................................................................................................................................................................................................................................GCATGGGAAATGTACAATGCTGACCAACTGTTAGAGCTAGTAGACCCTGTTTTGGATAGAGAACTTCTGAATGACGATGAAGCTCTCCGATTCTTGAAGGTTGGCCTCCTCTGTGTGCAAGAGAACGCCAGCCTCCGCCCCAAAATGTCCATGGTCATCAAGATGTTGAGTCGTGATGGCGCGATAATAGTTGATGAAATGAAGATTACTCAGCCTGGGATTGTTGCTGATCTAATGGATGTTAAGATAGGCAGAAAACACTCTTCTCAAAGCTTTTTTTCTAAAGCTTCTACAAGCATGAGCCCAGGAAGCCCCTTCCAAATAGTTAATAGAAGAAAAAGTAATAGCTAGAAAATAGTCGAGGTACGCACAAGCTGGTTCAGACATCACGATTATAAAAAAAAAATAGAATATACTTGTACAAAGAGTATATTGTGCACACACATAGATACACTTGCACTAAGTTTGATCACTTTTTTTTTTAATTGTTAGATCAGTTGTATATCAATGTGAGCAGCTAGGTCTTTAATTTTTTCAAATTTTTTTTTGGAATATTTGGTTCCATTTGATGTAAAAGCTACCTTTAATAACATTTTTTTTAGTTTTTCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E394946" ref_strand="+" ref_description="SGN-E394946 [TUS-43-K21](-)">
      <seq>tttttaaagcttttacaagcatgagcccaggaagccccttccaaatagttaatagaagaaaaagtaatagctagaaaatagtcgaggtacgcacaagctggttcagacatcacgattataaaaaaaaaatagaatatacttgtacaaagagtatattgtgcacacacatagatacacttgcactaagtttgatcacttttttttttaattgttagatcagttgtatatcaatgtgagcagctaggtctttaattttttcaaatttttttttggaatatttggttccatttgatgtaaaagctacctttaataacattttttttagtttttcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="-" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="21881" stop="20945"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21580" g_stop="21239" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="342" r_length="342" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="-" ref_id="SGN-E394946" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>342</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E394946" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21580" e_stop="21239"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTAAAGCTTCTACAAGCATGAGCCCAGGAAGCCCCTTCCAAATAGTTAATAGAAGAAAAAGTAATAGCTAGAAAATAGTCGAGGTACGCACAAGCTGGTTCAGACATCACGATTATAAAAAAAAAATAGAATATACTTGTACAAAGAGTATATTGTGCACACACATAGATACACTTGCACTAAGTTTGATCACTTTTTTTTTTAATTGTTAGATCAGTTGTATATCAATGTGAGCAGCTAGGTCTTTAATTTTTTCAAATTTTTTTTTGGAATATTTGGTTCCATTTGATGTAAAAGCTACCTTTAATAACATTTTTTTTAGTTTTTCAATAATTGAGT</genome_strand>
        <mrna_strand>TTTTTAAAGCTTTTACAAGCATGAGCCCAGGAAGCCCCTTCCAAATAGTTAATAGAAGAAAAAGTAATAGCTAGAAAATAGTCGAGGTACGCACAAGCTGGTTCAGACATCACGATTATAAAAAAAAAATAGAATATACTTGTACAAAGAGTATATTGTGCACACACATAGATACACTTGCACTAAGTTTGATCACTTTTTTTTTTAATTGTTAGATCAGTTGTATATCAATGTGAGCAGCTAGGTCTTTAATTTTTTCAAATTTTTTTTTGGAATATTTGGTTCCATTTGATGTAAAAGCTACCTTTAATAACATTTTTTTTAGTTTTTCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E397109" ref_strand="+" ref_description="SGN-E397109 [TUS-44-L22]">
      <seq>cctaattcttcttgcttttttcacattctttctccactaatatttttaaaaaattatttcttcataaaaactaaatttcaagaatcatgaagttttcttttccatttatctcatgttttagctcatcagcagataattttgaaggcagccaaatcccatatggtggacaaatttcccagaattttacagtgtactcttacagtgaattgaaagctgcaactcatggattcagagcttcaaataaaattggagaaggaggttttggttctgtttacaagggtcggctgcaagatggaacctttatggctgtaaaagttctttcagttgaattggaatcaatgagaggggaaagggaatttgtatcagaaatagctgcattgtctgatatcaaacatgaaaaccttgtcaacctcagaggatgttgtgttgatggagcacatagacttttagtctatgattacatggaaaacaacagtctttccctaacacttttaggtggggagcaaaacagaagtaaatttacatggacgcttaggataggagtttcgataggaatagcanagggactttcatatctccatgaagaagtgagtccacatgtcgtgcatagagatattaaaaccagcaacatactccttgatgagaatttcacaccaaaaattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="-" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="24114" stop="22150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23814" g_stop="23653" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23652" i_stop="23556" i_length="97">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23555" g_stop="23440" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="278" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23439" i_stop="23311" i_length="129">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23310" g_stop="23094" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="495" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23093" i_stop="22619" i_length="475">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22618" g_stop="22450" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="664" r_length="169" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="-" ref_id="SGN-E397109" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E397109" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23814" e_stop="23653"/>
          <exon e_start="23555" e_stop="23440"/>
          <exon e_start="23310" e_stop="23094"/>
          <exon e_start="22618" e_stop="22450"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAATTCTTCTTGCTTTTTTCACATTCTTTCTCCACTAATATTTTTAAAAAATTATTTCTTCATAAAAACTAAATTTCAAGAATCATGAAGTTTTCTTTTCCATTTATCTCATGTTTTAGCTCATCAGCAGATAATTTTGAAGGCAGCCAAATCCCATATGGTAAATTTCTCAAAACCCCTTTTTTGTTTTTTGCTTAAAAATCTCATCTTTTTTTTTTTTATATATATTTCTTAAGAATATCAAATTCTAAAAACAGGTGGACAAATTTCCCAGAATTTTACAGTGTACTCTTACAGTGAATTGAAAGCTGCAACTCATGGATTCAGAGCTTCAAATAAAATTGGAGAAGGAGGTTTTGGTTCTGTTTACAAGGTGAAAAAAAAGTTCTGTTTTTTTTTTTTTCAGTTGGGTTTGAAGAAAATGGAAAAAAGGGATGTGGGGTTTTGTTCTTTTTTATGAATTGACTATTTTTATGTTTTATTTGGGGGTTTTGTTGTAAAGGGTCGGCTGCAAGATGGAACCTTTATGGCTGTAAAAGTTCTTTCAGTTGAATTGGAATCAATGAGAGGGGAAAGGGAATTTGTATCAGAAATAGCTGCATTGTCTGATATCAAACATGAAAACCTTGTCAACCTCAGAGGATGTTGTGTTGATGGAGCACATAGACTTTTAGTCTATGATTACATGGAAAACAACAGTCTTTCCCTAACACTTTTAGGTAATTTCCTTGTTTTCATTGTCCTTGTTTTGGTTGATCCCCAACTTGTTTGAGATTGAGGCCTAGTTGTTGTTGTTTGTAGTTGTTTTAGCCTACCCCCGACTTGTTTGGAACTGAGGTTTAGTTATTGTTGTTTGCACTTGTTTTAGCCGATCCCGGCTTGTTTGAGATTGAGGTGTTGTTATTTGCCCTTGTTTTAGCCGGCCCCGATTTGTTTGTGATTGAGGCATGGATGTTGTTGTTTGCACTTATTAAAGCTGACCCCGTACTTATTTGGGACTGAGGCATAGTTGTTGTTGTTTGCACTCGTTTTAGACGACCCTCCACTTGTTTGGGACTCGGGCGTAGTTGTTGTTGTTTGAACTTGTTTTAGCCGACCCTGACTTGTTTAGTACTCAGGCGTAATTATAGTTATTTGCATTTGTTTCACTTTTGTATGTTCGTTGAGGTCGTGTCTGTTTGTTTTGACTAGCAGGTGGGGAGCAAAACAGAAGTAAATTTACATGGACGCTTAGGAAAGGAGTTTCGATAGGAATAGCAAAGGGACTTTCATATCTCCATGAAGAAGTGAGTCCACATGTCGTGCATAGAGATATTAAAACCAGCAACATACTCCTTGATGAGAATTTCACACCAAAAATTGC</genome_strand>
        <mrna_strand>CCTAATTCTTCTTGCTTTTTTCACATTCTTTCTCCACTAATATTTTTAAAAAATTATTTCTTCATAAAAACTAAATTTCAAGAATCATGAAGTTTTCTTTTCCATTTATCTCATGTTTTAGCTCATCAGCAGATAATTTTGAAGGCAGCCAAATCCCATATG.................................................................................................GTGGACAAATTTCCCAGAATTTTACAGTGTACTCTTACAGTGAATTGAAAGCTGCAACTCATGGATTCAGAGCTTCAAATAAAATTGGAGAAGGAGGTTTTGGTTCTGTTTACAAG.................................................................................................................................GGTCGGCTGCAAGATGGAACCTTTATGGCTGTAAAAGTTCTTTCAGTTGAATTGGAATCAATGAGAGGGGAAAGGGAATTTGTATCAGAAATAGCTGCATTGTCTGATATCAAACATGAAAACCTTGTCAACCTCAGAGGATGTTGTGTTGATGGAGCACATAGACTTTTAGTCTATGATTACATGGAAAACAACAGTCTTTCCCTAACACTTTTAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGGAGCAAAACAGAAGTAAATTTACATGGACGCTTAGGATAGGAGTTTCGATAGGAATAGCANAGGGACTTTCATATCTCCATGAAGAAGTGAGTCCACATGTCGTGCATAGAGATATTAAAACCAGCAACATACTCCTTGATGAGAATTTCACACCAAAAATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E304704" ref_strand="+" ref_description="SGN-E304704 [cLEX-11-F13]">
      <seq>attggagaaggaggttttggttctgtttacaagggtcggctgcaagatggaacctttatggctgtaaaagttctttcagttgaattggaatcaatgagaggggaaagggaatttgtatcagaaatagctgcattgtctgatatcaaacatgaaaaccttgtcaacctcagaggatgttgtgttgatggagcacatagacttttagtctatgattacatggaaaacaacagtctttccctaacacttttaggtggggagcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="-" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="23772" stop="22792"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23472" g_stop="23440" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23439" i_stop="23311" i_length="129">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23310" g_stop="23094" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="250" r_length="217" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="-" ref_id="SGN-E304704" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>250</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304704" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23472" e_stop="23440"/>
          <exon e_start="23310" e_stop="23094"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGGAGAAGGAGGTTTTGGTTCTGTTTACAAGGTGAAAAAAAAGTTCTGTTTTTTTTTTTTTCAGTTGGGTTTGAAGAAAATGGAAAAAAGGGATGTGGGGTTTTGTTCTTTTTTATGAATTGACTATTTTTATGTTTTATTTGGGGGTTTTGTTGTAAAGGGTCGGCTGCAAGATGGAACCTTTATGGCTGTAAAAGTTCTTTCAGTTGAATTGGAATCAATGAGAGGGGAAAGGGAATTTGTATCAGAAATAGCTGCATTGTCTGATATCAAACATGAAAACCTTGTCAACCTCAGAGGATGTTGTGTTGATGGAGCACATAGACTTTTAGTCTATGATTACATGGAAAACAACAGTCTTTCCCTAACACTTTTAG</genome_strand>
        <mrna_strand>ATTGGAGAAGGAGGTTTTGGTTCTGTTTACAAG.................................................................................................................................GGTCGGCTGCAAGATGGAACCTTTATGGCTGTAAAAGTTCTTTCAGTTGAATTGGAATCAATGAGAGGGGAAAGGGAATTTGTATCAGAAATAGCTGCATTGTCTGATATCAAACATGAAAACCTTGTCAACCTCAGAGGATGTTGTGTTGATGGAGCACATAGACTTTTAGTCTATGATTACATGGAAAACAACAGTCTTTCCCTAACACTTTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E394947" ref_strand="+" ref_description="SGN-E394947 [TUS-43-K21]">
      <seq>cctaattcttcttgcttttttcacattctttctccactaatatttttaaaaaattatttcttcataaaaactaaatttcaagaatcatgaagttttcttttccatttatctcatgttttagctcatcagcagataattttgaaggcagccaaatcccatatggtggacaaatttcccagaattttacagtgtactcttacagtgaattgaaagctgcaactcatggattcagagcttcaaataaaattggagaaggaggttttggttctgtttacaagggtcggctgcaagatggaacctttatggctgtaaaagttctttcagttgaattggaatcaatgagaggggaaagggaatttgtatcagaaatagctgcattgtctgatatcaaacatgaaaaccttgtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="-" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="24114" stop="22881"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23814" g_stop="23653" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23652" i_stop="23556" i_length="97">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23555" g_stop="23440" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="278" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23439" i_stop="23311" i_length="129">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23310" g_stop="23181" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="408" r_length="130" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="-" ref_id="SGN-E394947" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E394947" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23814" e_stop="23653"/>
          <exon e_start="23555" e_stop="23440"/>
          <exon e_start="23310" e_stop="23181"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAATTCTTCTTGCTTTTTTCACATTCTTTCTCCACTAATATTTTTAAAAAATTATTTCTTCATAAAAACTAAATTTCAAGAATCATGAAGTTTTCTTTTCCATTTATCTCATGTTTTAGCTCATCAGCAGATAATTTTGAAGGCAGCCAAATCCCATATGGTAAATTTCTCAAAACCCCTTTTTTGTTTTTTGCTTAAAAATCTCATCTTTTTTTTTTTTATATATATTTCTTAAGAATATCAAATTCTAAAAACAGGTGGACAAATTTCCCAGAATTTTACAGTGTACTCTTACAGTGAATTGAAAGCTGCAACTCATGGATTCAGAGCTTCAAATAAAATTGGAGAAGGAGGTTTTGGTTCTGTTTACAAGGTGAAAAAAAAGTTCTGTTTTTTTTTTTTTCAGTTGGGTTTGAAGAAAATGGAAAAAAGGGATGTGGGGTTTTGTTCTTTTTTATGAATTGACTATTTTTATGTTTTATTTGGGGGTTTTGTTGTAAAGGGTCGGCTGCAAGATGGAACCTTTATGGCTGTAAAAGTTCTTTCAGTTGAATTGGAATCAATGAGAGGGGAAAGGGAATTTGTATCAGAAATAGCTGCATTGTCTGATATCAAACATGAAAACCTTGTCA</genome_strand>
        <mrna_strand>CCTAATTCTTCTTGCTTTTTTCACATTCTTTCTCCACTAATATTTTTAAAAAATTATTTCTTCATAAAAACTAAATTTCAAGAATCATGAAGTTTTCTTTTCCATTTATCTCATGTTTTAGCTCATCAGCAGATAATTTTGAAGGCAGCCAAATCCCATATG.................................................................................................GTGGACAAATTTCCCAGAATTTTACAGTGTACTCTTACAGTGAATTGAAAGCTGCAACTCATGGATTCAGAGCTTCAAATAAAATTGGAGAAGGAGGTTTTGGTTCTGTTTACAAG.................................................................................................................................GGTCGGCTGCAAGATGGAACCTTTATGGCTGTAAAAGTTCTTTCAGTTGAATTGGAATCAATGAGAGGGGAAAGGGAATTTGTATCAGAAATAGCTGCATTGTCTGATATCAAACATGAAAACCTTGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E201069" ref_strand="+" ref_description="SGN-E201069 [cLEC-10-E17]">
      <seq>ctaattcttcttgcttttttcacattctttctccactaatatttttaaaaaattatttcttcataaaaactaaatttcaagaatcatgaagttttcttttccatttatctcatgttttagctcatcagcagataattttgaaggcagccaaatcccatatggtggacaaatttcccagaattttacagtgtactcttacagtgaattgaaagctgcaactcatggattcagagcttcaaataaaattggagaaggaggttttggttctgtttacaagggtcggctgcaagatggaacctttatggctgtaaaagttctttcagttgaattggaatcaatgagaggggaaagggaatttgtatcagaaatagctgcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="-" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="24113" stop="22910"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23813" g_stop="23653" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23652" i_stop="23556" i_length="97">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23555" g_stop="23440" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="277" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23439" i_stop="23311" i_length="129">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23310" g_stop="23210" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="378" r_length="101" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="-" ref_id="SGN-E201069" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>378</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201069" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23813" e_stop="23653"/>
          <exon e_start="23555" e_stop="23440"/>
          <exon e_start="23310" e_stop="23210"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAATTCTTCTTGCTTTTTTCACATTCTTTCTCCACTAATATTTTTAAAAAATTATTTCTTCATAAAAACTAAATTTCAAGAATCATGAAGTTTTCTTTTCCATTTATCTCATGTTTTAGCTCATCAGCAGATAATTTTGAAGGCAGCCAAATCCCATATGGTAAATTTCTCAAAACCCCTTTTTTGTTTTTTGCTTAAAAATCTCATCTTTTTTTTTTTTATATATATTTCTTAAGAATATCAAATTCTAAAAACAGGTGGACAAATTTCCCAGAATTTTACAGTGTACTCTTACAGTGAATTGAAAGCTGCAACTCATGGATTCAGAGCTTCAAATAAAATTGGAGAAGGAGGTTTTGGTTCTGTTTACAAGGTGAAAAAAAAGTTCTGTTTTTTTTTTTTTCAGTTGGGTTTGAAGAAAATGGAAAAAAGGGATGTGGGGTTTTGTTCTTTTTTATGAATTGACTATTTTTATGTTTTATTTGGGGGTTTTGTTGTAAAGGGTCGGCTGCAAGATGGAACCTTTATGGCTGTAAAAGTTCTTTCAGTTGAATTGGAATCAATGAGAGGGGAAAGGGAATTTGTATCAGAAATAGCTGCATT</genome_strand>
        <mrna_strand>CTAATTCTTCTTGCTTTTTTCACATTCTTTCTCCACTAATATTTTTAAAAAATTATTTCTTCATAAAAACTAAATTTCAAGAATCATGAAGTTTTCTTTTCCATTTATCTCATGTTTTAGCTCATCAGCAGATAATTTTGAAGGCAGCCAAATCCCATATG.................................................................................................GTGGACAAATTTCCCAGAATTTTACAGTGTACTCTTACAGTGAATTGAAAGCTGCAACTCATGGATTCAGAGCTTCAAATAAAATTGGAGAAGGAGGTTTTGGTTCTGTTTACAAG.................................................................................................................................GGTCGGCTGCAAGATGGAACCTTTATGGCTGTAAAAGTTCTTTCAGTTGAATTGGAATCAATGAGAGGGGAAAGGGAATTTGTATCAGAAATAGCTGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E546282" ref_strand="+" ref_description="SGN-E546282 [TUS-69-J2]">
      <seq>cgcttcaatacattagcagatattgccacaaattctcttgtttgcatgatgatttctgcaaaaactccccagaatcagaaactacgataacgaagtaggagaaagatcacggagaccaaggaagaggttaccatttgagggatcacgagggagatgaagtagcgttccgtgttgcaaacattgttgccactttcaaggactcctacattgttgccttttgttctttgccaactactgattctgatttactgaattgtcatcaaacccaacagttccaacttccttcatccaagcctaacctgttttgttggttgactaccactttgcaaaatagatctcgccaatcagctgtattccgtcgactatggtcatatgcttcctgcaaaagctgacgaaagctggcgtgatttacatggaaaggtgtgccgatgatgttgtgaaataaagatgtcccatcactagcttgcgaaagacgaaggccgtcaaatatgactttctgaatgtgctgatcaccagtgccattattaagagtatatgacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="+" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="31998" stop="34111"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32298" g_stop="32391" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32392" i_stop="32987" i_length="596">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32988" g_stop="33117" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="220" r_length="126" r_score="0.846"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33118" i_stop="33371" i_length="254">
            <donor d_prob="0.895" d_score="0.62"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33372" g_stop="33406" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="255" r_length="35" r_score="0.600"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33407" i_stop="33526" i_length="120">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33527" g_stop="33812" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="541" r_length="286" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="+" ref_id="SGN-E546282" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E546282" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32298" e_stop="32391"/>
          <exon e_start="32988" e_stop="33117"/>
          <exon e_start="33372" e_stop="33406"/>
          <exon e_start="33527" e_stop="33812"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCTTCAATACATTAGCAGATATTGCCACAAATTCTCTTGTTTGCATGATGATTTCTGCAAAAGCTCCCCAGAATCAGAAACTACGATAACGAAGTAAGTTTTTATAGTTCATATTTGTGATTGTAAATCGAATTTATGTTGTTTATTTTCTGTGAATTGAATGCGAAGGAGTTGTTAGGGTTTGCCGATTGTAAATTCGTGTTTCGATTATAGAATTAGCGAGAGCAATAACTAGTGGAATCACCTGGTAAAAAAAAGTCTAATTTGTTCGCAGCATAGAAAAAGTCGAAATAAAATCTCAAAGCTCCTCATTTTTGTTTTTTTTTTGGAGATGCGAACTGATAATTGAAATTACAGCATTTTGGATCAAGTCTCGTTTTTTCATACTCTGTAATAGTGACAATTTTTTTTTTTTGCTCTATGATGTATATGAAAGGACCATTTTTTTTTGCTTCCGATAACCATGGTGTCTGAGCTAGTTTGTGTACACCTCGACTAATTATTTGAGCCCTTTGCATTTTGGACCATTATATTGAGTAGAAAACAGTAAGAGGCTTAACTTCTACCGTTAGAGATTTTTGACCATTTGAGTAGTAGGATACAGTAAGATACTTTCCTTTTTACTGCTTTTCGTTTCGTGAAGTATATTGTTAAAGGCTCATCTTATCTATTATTTGGTTCATACTCAGGTAGGAGAAAGATCACGGAGACCAAGGAAGAGGTTACCATTTGAGGAATCACGAGGGAGATGAAGTAGCGTTCCGTGTTGCAAACATTGTTGCCTTTTGTTCTTTGCCAACTACTGATTCTGATTTACTGGTAAAGTTTTTATATCATATGTTTTAGTTACCCTTGTGATATGTTAGTTTTATACTATTACTCCATATTAAGGGCAAGATATAATTCTGAAAGTAGTCTACATATGACATATTATCTACATAAAGAAACCAAAATCACATTTTAATTAATTGAAGCTTATACGTATTTATTCACATACAACAATAATAACAGACCCACTGTAAAATCACATTCTAATAGAGAGATTGTTTCCAATAGACCCTCAGTTGTCTATAATATTTACCAATTACCATTGCCGTTTGTCTAACTTTAACCAAGGTAATCTACAAGAACCACGGTTTTGGATATTTGGCCTTATGGGAAGAAGTTCAAATTTAAAAGATTTTGAACTTTGACCTTGAAGGTTTTCAGCAAGACTATTCATTTTCAAGGCATCAAACCCAACAGTTCCAACTTCCTTCATCCAAGCCTAACCTGTTTTGTTGGTTGACTACCACTTTGCAAAATAGATCTCGCCAATCAGCTGTATTCTGTCGACTATGGTCATATGCTTCCTGCAAAAGCTGACGAAAGCTGGCGTGATTTACATGGAAAGGTGTGCCGATGATGTTGTGAAATAAAGATGTGCCATCACTAGCTTGCGAAAGACGAAGGCCGTCAAATATGACTTTCTGAATGTGCTGATCACCAGTGCCATTATTAAGACTATATGACAG</genome_strand>
        <mrna_strand>CGCTTCAATACATTAGCAGATATTGCCACAAATTCTCTTGTTTGCATGATGATTTCTGCAAAAACTCCCCAGAATCAGAAACTACGATAACGAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGGAGAAAGATCACGGAGACCAAGGAAGAGGTTACCATTTGAGGGATCACGAGGGAGATGAAGTAGCGTTCCGTGTTGCAAACATTGTTGCC-ACT-TTCAAGGACTCCTAC--ATTGTTGCCTTTTG..............................................................................................................................................................................................................................................................TTCTTTGCCAACTACTGATTCTGATTTACTGAATT........................................................................................................................GTCATCAAACCCAACAGTTCCAACTTCCTTCATCCAAGCCTAACCTGTTTTGTTGGTTGACTACCACTTTGCAAAATAGATCTCGCCAATCAGCTGTATTCCGTCGACTATGGTCATATGCTTCCTGCAAAAGCTGACGAAAGCTGGCGTGATTTACATGGAAAGGTGTGCCGATGATGTTGTGAAATAAAGATGTCCCATCACTAGCTTGCGAAAGACGAAGGCCGTCAAATATGACTTTCTGAATGTGCTGATCACCAGTGCCATTATTAAGAGTATATGACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E358720" ref_strand="+" ref_description="SGN-E358720 [cLHT-22-P18]">
      <seq>gcttcaatacattagcagatattgccacaaattctcttgtttgcatgatgatttctgcaaaaactccccagaatcagaaactacgataacgaagtaggagaaagatcacggagaccaaggaagaggttaccatttgagggatcacgagggagatgaagtagcgttccgtgttgcaaacattgttgccactttcaaggactcctacattgttgccttttgttctttgccaactactgattctgatttactgaattgtcatcaaacccaacagttccaacttccttcatccaagcctaacctgttttgttggttgactaccactttgcaaaatagatctcgccaatcagctgtattccgtcgactatggtcatatgcttcctgcaaaagctgacgaaagctggcgtgatttacatggaaaggtgtgccgatgatgttgtgaaataaagatgtcccatcactagcttgcgaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="+" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="31999" stop="34043"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32299" g_stop="32391" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32392" i_stop="32987" i_length="596">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32988" g_stop="33117" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="219" r_length="126" r_score="0.846"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33118" i_stop="33371" i_length="254">
            <donor d_prob="0.895" d_score="0.62"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33372" g_stop="33406" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="254" r_length="35" r_score="0.600"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33407" i_stop="33526" i_length="120">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33527" g_stop="33743" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="471" r_length="217" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="+" ref_id="SGN-E358720" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E358720" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32299" e_stop="32391"/>
          <exon e_start="32988" e_stop="33117"/>
          <exon e_start="33372" e_stop="33406"/>
          <exon e_start="33527" e_stop="33743"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCAATACATTAGCAGATATTGCCACAAATTCTCTTGTTTGCATGATGATTTCTGCAAAAGCTCCCCAGAATCAGAAACTACGATAACGAAGTAAGTTTTTATAGTTCATATTTGTGATTGTAAATCGAATTTATGTTGTTTATTTTCTGTGAATTGAATGCGAAGGAGTTGTTAGGGTTTGCCGATTGTAAATTCGTGTTTCGATTATAGAATTAGCGAGAGCAATAACTAGTGGAATCACCTGGTAAAAAAAAGTCTAATTTGTTCGCAGCATAGAAAAAGTCGAAATAAAATCTCAAAGCTCCTCATTTTTGTTTTTTTTTTGGAGATGCGAACTGATAATTGAAATTACAGCATTTTGGATCAAGTCTCGTTTTTTCATACTCTGTAATAGTGACAATTTTTTTTTTTTGCTCTATGATGTATATGAAAGGACCATTTTTTTTTGCTTCCGATAACCATGGTGTCTGAGCTAGTTTGTGTACACCTCGACTAATTATTTGAGCCCTTTGCATTTTGGACCATTATATTGAGTAGAAAACAGTAAGAGGCTTAACTTCTACCGTTAGAGATTTTTGACCATTTGAGTAGTAGGATACAGTAAGATACTTTCCTTTTTACTGCTTTTCGTTTCGTGAAGTATATTGTTAAAGGCTCATCTTATCTATTATTTGGTTCATACTCAGGTAGGAGAAAGATCACGGAGACCAAGGAAGAGGTTACCATTTGAGGAATCACGAGGGAGATGAAGTAGCGTTCCGTGTTGCAAACATTGTTGCCTTTTGTTCTTTGCCAACTACTGATTCTGATTTACTGGTAAAGTTTTTATATCATATGTTTTAGTTACCCTTGTGATATGTTAGTTTTATACTATTACTCCATATTAAGGGCAAGATATAATTCTGAAAGTAGTCTACATATGACATATTATCTACATAAAGAAACCAAAATCACATTTTAATTAATTGAAGCTTATACGTATTTATTCACATACAACAATAATAACAGACCCACTGTAAAATCACATTCTAATAGAGAGATTGTTTCCAATAGACCCTCAGTTGTCTATAATATTTACCAATTACCATTGCCGTTTGTCTAACTTTAACCAAGGTAATCTACAAGAACCACGGTTTTGGATATTTGGCCTTATGGGAAGAAGTTCAAATTTAAAAGATTTTGAACTTTGACCTTGAAGGTTTTCAGCAAGACTATTCATTTTCAAGGCATCAAACCCAACAGTTCCAACTTCCTTCATCCAAGCCTAACCTGTTTTGTTGGTTGACTACCACTTTGCAAAATAGATCTCGCCAATCAGCTGTATTCTGTCGACTATGGTCATATGCTTCCTGCAAAAGCTGACGAAAGCTGGCGTGATTTACATGGAAAGGTGTGCCGATGATGTTGTGAAATAAAGATGTGCCATCACTAGCTTGCGAAAG</genome_strand>
        <mrna_strand>GCTTCAATACATTAGCAGATATTGCCACAAATTCTCTTGTTTGCATGATGATTTCTGCAAAAACTCCCCAGAATCAGAAACTACGATAACGAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGGAGAAAGATCACGGAGACCAAGGAAGAGGTTACCATTTGAGGGATCACGAGGGAGATGAAGTAGCGTTCCGTGTTGCAAACATTGTTGCC-ACT-TTCAAGGACTCCTAC--ATTGTTGCCTTTTG..............................................................................................................................................................................................................................................................TTCTTTGCCAACTACTGATTCTGATTTACTGAATT........................................................................................................................GTCATCAAACCCAACAGTTCCAACTTCCTTCATCCAAGCCTAACCTGTTTTGTTGGTTGACTACCACTTTGCAAAATAGATCTCGCCAATCAGCTGTATTCCGTCGACTATGGTCATATGCTTCCTGCAAAAGCTGACGAAAGCTGGCGTGATTTACATGGAAAGGTGTGCCGATGATGTTGTGAAATAAAGATGTCCCATCACTAGCTTGCGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E740227" ref_strand="+" ref_description="SGN-E740227 [LC20CD05]">
      <seq>actattgaaaaaagtaaggttcaatttgatgacagataggaaaatgattgatagttttgtcagttaggcttcaaatatttctcattatcaagtagcagaaaaaattgaatatattttctcatcatatacctaaagctgagagttagtctttagcaatataatataacaatgtctcatgcttcttcttcgaaaatttgcaagtacgatgtgtttttgagttttagaggagaagatacacgtacaacatttgtgagtcatctatataaagccctggaacaaagtggaatccgcatttttaaagatgatgagcgattagaaagggggaaaccaatttttgatgaacttttaaaagccatagaagagtctaaaattgctatagtgatattttcgaaaagctatgcatcgtcgagatggtgcttacaggagcttgcacacatcataaagtgtagaaacgaattggagctaatagtgattccagttttctatgatgtaactccatcagatgtgcgccatcaaaatcccccttttgctgattcatttttacaatacatgaaagatgatatggagaaggttcatagatggagggctgcatttgtggaggctgggaaaatatcaggctatcatttacttaattttcagcatgaagcaaaaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="-" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="38989" stop="37747"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38689" g_stop="38052" g_length="638"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="638" r_length="638" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="-" ref_id="SGN-E740227" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740227" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38689" e_stop="38052"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAATGAAAAAAGTAGGGTTCAATTTGATGACAGATAGGAAAATGATTGATAGTTTTGTCAGTTAGGCTTCAAATATTTCTCATTATCAAGTAGCAGAAAAAATTGAATATATTTTCTCATCATATACCTAAAGCAGAGAGTTAGTCTTTAGCAATATAATATAACAATGTCTCATGCTTTTTCTTCGAAAATTTGCAAGTACGATGTGTTTTTGAGTTTTAGAGGAGAAGATACACGTAGAACATTTGTGAGTCATCTATATAAAGCCCTGGAACAAAGTGGAATCCGCATTTTTAAAGATGATGAGCGATTAGAAAGGGGGAAACCAATTTTTGATGAACTTTTAAAAGCCATAGAAGAGTCTAAAATTGCTATAGTGATATTTTCGAAAAGCTATGCATCGTCGAGATGGTGCTTAGAGGAGCTTGCACACATCATAAAGTGTAGAAACGAATTGGAGCTAATAGTGATTCCAGTTTTCTATGATGTAACTCCATCAGATGTGCGCCATCAAAATCCCCCTTTTGCTGATTCATTTTTACAATACATGAAAGATGATATGGAGAAGGTTCAGAGATGGAGGGCTGCATTTGTGGAGGCTGGGAAAATATCAGGCTATCATTTACTTAATTTCAA</genome_strand>
        <mrna_strand>ACTATTGAAAAAAGTAAGGTTCAATTTGATGACAGATAGGAAAATGATTGATAGTTTTGTCAGTTAGGCTTCAAATATTTCTCATTATCAAGTAGCAGAAAAAATTGAATATATTTTCTCATCATATACCTAAAGCTGAGAGTTAGTCTTTAGCAATATAATATAACAATGTCTCATGCTTCTTCTTCGAAAATTTGCAAGTACGATGTGTTTTTGAGTTTTAGAGGAGAAGATACACGTACAACATTTGTGAGTCATCTATATAAAGCCCTGGAACAAAGTGGAATCCGCATTTTTAAAGATGATGAGCGATTAGAAAGGGGGAAACCAATTTTTGATGAACTTTTAAAAGCCATAGAAGAGTCTAAAATTGCTATAGTGATATTTTCGAAAAGCTATGCATCGTCGAGATGGTGCTTACAGGAGCTTGCACACATCATAAAGTGTAGAAACGAATTGGAGCTAATAGTGATTCCAGTTTTCTATGATGTAACTCCATCAGATGTGCGCCATCAAAATCCCCCTTTTGCTGATTCATTTTTACAATACATGAAAGATGATATGGAGAAGGTTCATAGATGGAGGGCTGCATTTGTGGAGGCTGGGAAAATATCAGGCTATCATTTACTTAATTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E344745" ref_strand="+" ref_description="SGN-E344745 [cTOF-21-D15]">
      <seq>cccaccccaccccaccaccctactctccaaccccattatcttcatcatcatcatcaagattcctctttccactttctccataatcatctcttcaatttttttacaatatatatcttgtttaatctcattgttatcttttcttctgtgctgtttattcgaaaccccatttcgttttttcttcacttttctactgtttcacgtcataatttgagaaaaggggcgaaagggtgttgaaattttgtttattttcatgaatggtttgattcaaagtttgggagttttcgatttttgatttgggtttttttggttttaggtgaaaagtttgattttttttggttaaaaatgggtaatatgggaagtagtggtgtgaacggccggcgacggagtagtagccggaggagccacccaccgccgtctccacaaccacaaccaccgcagccggagataaacgcgaacaggtatgtgtttgcggcggcgacgccttatcctactcaatacccaaaccctaatgctccgccgtattatcaatacccgggttactatcctccaccgccggcggcgatgccggtgccgttaccagcttcgtatgatcatcaccataggatggaccctggtcatgctaattgggttaacgggcggtacccgtgtggaccgatgatgcctncaccagctccatatgtggagcatcaaaaagctgtaacataaggaatgatgttaacttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="+" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="46506" stop="47829"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46806" g_stop="47529" g_length="724"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="723" r_length="723" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="+" ref_id="SGN-E344745" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344745" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46806" e_stop="47529"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCACCCCACCCCACCACCCTACTCTCCAACCCCATTATCTTCATCATCATCATCAAGATTCCTCTTTCCACTTTCTCCATAATCATCTCTTCAATTTTTTTACAATATATATCTTGTTTAATCTCATTGTTATCTTTTCTTCTGTGCTGTTTATTCGAAACCCCATTTCGTTTTTTCTTCACTTTTCTACTGTTTCACGTCATAATTTGAGAAAAGGGGCGAAAGGGTGTTGAAATTTTGTTTATTTTCATGAATGGTTTGATTCAAAGTTTGGGAGTTTTCGATTTTTGATTTGGGTTTTTTTGGTTTTAGGTGAAAAGTTTGATTTTTTTTGGTTAAAAATGGGTAATATGGGAAGTAGTGGTGTGAACGGCCGGCGACGGAGTAGTAGCCGGAGGAGCCACCCACCGCCGTCTCCACAACCACAACCACCGCAGCCGGAGATAAACGCGAACAGGTATGTGTTTGCGGCGGCGACGCCTTATCCTACTCAATACCCAAACCCTAATGCTCCGCCGTATTATCAATACCCGGGTTACTATCCTCCACCGCCGGCGGCGATGCCGGTGCCGTTACCAGCTTCGTATGATCATCACCATAGGATGGACCCTGGTCATGCTAATTGGGTTAACGGGCGGTACCCGTGTGGACCGATGATGCCTCCACCAGCTCCATATGTGGAGCATCAAAAAGCTGTAACAATAAGGAATGATGTTAACTTGA</genome_strand>
        <mrna_strand>CCCACCCCACCCCACCACCCTACTCTCCAACCCCATTATCTTCATCATCATCATCAAGATTCCTCTTTCCACTTTCTCCATAATCATCTCTTCAATTTTTTTACAATATATATCTTGTTTAATCTCATTGTTATCTTTTCTTCTGTGCTGTTTATTCGAAACCCCATTTCGTTTTTTCTTCACTTTTCTACTGTTTCACGTCATAATTTGAGAAAAGGGGCGAAAGGGTGTTGAAATTTTGTTTATTTTCATGAATGGTTTGATTCAAAGTTTGGGAGTTTTCGATTTTTGATTTGGGTTTTTTTGGTTTTAGGTGAAAAGTTTGATTTTTTTTGGTTAAAAATGGGTAATATGGGAAGTAGTGGTGTGAACGGCCGGCGACGGAGTAGTAGCCGGAGGAGCCACCCACCGCCGTCTCCACAACCACAACCACCGCAGCCGGAGATAAACGCGAACAGGTATGTGTTTGCGGCGGCGACGCCTTATCCTACTCAATACCCAAACCCTAATGCTCCGCCGTATTATCAATACCCGGGTTACTATCCTCCACCGCCGGCGGCGATGCCGGTGCCGTTACCAGCTTCGTATGATCATCACCATAGGATGGACCCTGGTCATGCTAATTGGGTTAACGGGCGGTACCCGTGTGGACCGATGATGCCTNCACCAGCTCCATATGTGGAGCATCAAAAAGCTGTAAC-ATAAGGAATGATGTTAACTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E315288" ref_strand="+" ref_description="SGN-E315288 [cTOA-24-O20]">
      <seq>tactctccaaccccattatcttcatcatcatcatcaagattcctctttccactttctccataatcatctcttcaatttttttacaatatatatcttgtttaatctcattgttatcttttcttctgtgctgtttattcgaaaccccatttcgttttttcttcacttttctactgtttcacgtcataatttgagaaaaggggcgaaagggtgttgaaattttgtttattttcatgaatggtttgattcaaagtttgggagttttcgatttttgatttgggtttttttggttttaggtgaaaagtttgattttttttggttaaaaatgggtaatatgggaagtagtggtgtgaacggccggcgacggagtagtagccggaggagccacccaccgccgtctccacaaccacaaccaccgcagccggagataaacgcgaacaggtatgtgtttgcggcggcgacgccttatcctactcaatacccaaaccctaatgctccgccgtattatcaatacccgggttactatcctccaccgccggcggcgatgccggtgccgttaccagcttcgtatgatcatcaccataggatggaccctggtcatgctaattgggttaacgggcggtacccgtgtggaccgatgatgcctcccacagctccatatgtggagcatcaaaaagctgtaacaataaggaatgatgttaacttgaagaagagactctaangattgagcctgatgaagctaatcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="+" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="46526" stop="47870"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46826" g_stop="47570" g_length="745"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="744" r_length="744" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="+" ref_id="SGN-E315288" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>745</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315288" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46826" e_stop="47570"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTCTCCAACCCCATTATCTTCATCATCATCATCAAGATTCCTCTTTCCACTTTCTCCATAATCATCTCTTCAATTTTTTTACAATATATATCTTGTTTAATCTCATTGTTATCTTTTCTTCTGTGCTGTTTATTCGAAACCCCATTTCGTTTTTTCTTCACTTTTCTACTGTTTCACGTCATAATTTGAGAAAAGGGGCGAAAGGGTGTTGAAATTTTGTTTATTTTCATGAATGGTTTGATTCAAAGTTTGGGAGTTTTCGATTTTTGATTTGGGTTTTTTTGGTTTTAGGTGAAAAGTTTGATTTTTTTTGGTTAAAAATGGGTAATATGGGAAGTAGTGGTGTGAACGGCCGGCGACGGAGTAGTAGCCGGAGGAGCCACCCACCGCCGTCTCCACAACCACAACCACCGCAGCCGGAGATAAACGCGAACAGGTATGTGTTTGCGGCGGCGACGCCTTATCCTACTCAATACCCAAACCCTAATGCTCCGCCGTATTATCAATACCCGGGTTACTATCCTCCACCGCCGGCGGCGATGCCGGTGCCGTTACCAGCTTCGTATGATCATCACCATAGGATGGACCCTGGTCATGCTAATTGGGTTAACGGGCGGTACCCGTGTGGACCGATGATGCCTCCACCAGCTCCATATGTGGAGCATCAAAAAGCTGTAACAATAAGGAATGATGTTAACTTGAAGAAGGAGACTCTAAGGATTGAGCCTGATGAAGCTAATCCT</genome_strand>
        <mrna_strand>TACTCTCCAACCCCATTATCTTCATCATCATCATCAAGATTCCTCTTTCCACTTTCTCCATAATCATCTCTTCAATTTTTTTACAATATATATCTTGTTTAATCTCATTGTTATCTTTTCTTCTGTGCTGTTTATTCGAAACCCCATTTCGTTTTTTCTTCACTTTTCTACTGTTTCACGTCATAATTTGAGAAAAGGGGCGAAAGGGTGTTGAAATTTTGTTTATTTTCATGAATGGTTTGATTCAAAGTTTGGGAGTTTTCGATTTTTGATTTGGGTTTTTTTGGTTTTAGGTGAAAAGTTTGATTTTTTTTGGTTAAAAATGGGTAATATGGGAAGTAGTGGTGTGAACGGCCGGCGACGGAGTAGTAGCCGGAGGAGCCACCCACCGCCGTCTCCACAACCACAACCACCGCAGCCGGAGATAAACGCGAACAGGTATGTGTTTGCGGCGGCGACGCCTTATCCTACTCAATACCCAAACCCTAATGCTCCGCCGTATTATCAATACCCGGGTTACTATCCTCCACCGCCGGCGGCGATGCCGGTGCCGTTACCAGCTTCGTATGATCATCACCATAGGATGGACCCTGGTCATGCTAATTGGGTTAACGGGCGGTACCCGTGTGGACCGATGATGCCTCCCACAGCTCCATATGTGGAGCATCAAAAAGCTGTAACAATAAGGAATGATGTTAACTTGAAGAA-GAGACTCTAANGATTGAGCCTGATGAAGCTAATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E726774" ref_strand="+" ref_description="SGN-E726774 [LA12DB05]">
      <seq>atctcttcaatttttttacaatatatatcttgtttaatctcattgttatcttttcttctgtgctgtttattcgaaaccccatttcgttttttcttcacttttctactgtttcgcgtcataatttgagaaaaggggcgaaagggtgttgaaattttgtttattttcatgaatggtttgattcaaagtttgggaattttcgatttttgatttgggtttttttggttttaggtgaaaagtttgattttttttggttaaaaatgggtaatatgggaagtagtggtgtgaacggccggcgacggagtagtagccggaggagccacccaccgccgtctccacaaccacaaccaccgcagccggagataaacgcgaacaggtatgtgtttgcggcggcgacgccttatcctactcaatacccaaaccctaatgctccgccgtattatcaatacccgggttactatcctccaccgccggcggcgatgccggtgccgttaccagcttcgtatgatcatcaccataggatggaccctggtcatgctaattgggttaacgggcggtacccgtgtggaccgatgatgcctccaccagctccgtatgtggagcatcaaaaagctgtaacaataaggaatgatgttaacttgaagaaggagactctaaggattgagcctgatgaagctaatcctggcaagtatcttgtggccttcacttttgatgccacagttcctgggagcatgactgtcattttctttgcaaaagaaggtgaagattgttgtttgactcccatgaaggaaagcttgcttccaccagtaacttttgagtttcaaaaaggtttagctcagaaatttaggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="+" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="46591" stop="50495"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46891" g_stop="47617" g_length="727"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="727" r_length="727" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47618" i_stop="50075" i_length="2458">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50076" g_stop="50195" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="728" r_stop="847" r_length="120" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="+" ref_id="SGN-E726774" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>847</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726774" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46891" e_stop="47617"/>
          <exon e_start="50076" e_stop="50195"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCTTCAATTTTTTTACAATATATATCTTGTTTAATCTCATTGTTATCTTTTCTTCTGTGCTGTTTATTCGAAACCCCATTTCGTTTTTTCTTCACTTTTCTACTGTTTCACGTCATAATTTGAGAAAAGGGGCGAAAGGGTGTTGAAATTTTGTTTATTTTCATGAATGGTTTGATTCAAAGTTTGGGAGTTTTCGATTTTTGATTTGGGTTTTTTTGGTTTTAGGTGAAAAGTTTGATTTTTTTTGGTTAAAAATGGGTAATATGGGAAGTAGTGGTGTGAACGGCCGGCGACGGAGTAGTAGCCGGAGGAGCCACCCACCGCCGTCTCCACAACCACAACCACCGCAGCCGGAGATAAACGCGAACAGGTATGTGTTTGCGGCGGCGACGCCTTATCCTACTCAATACCCAAACCCTAATGCTCCGCCGTATTATCAATACCCGGGTTACTATCCTCCACCGCCGGCGGCGATGCCGGTGCCGTTACCAGCTTCGTATGATCATCACCATAGGATGGACCCTGGTCATGCTAATTGGGTTAACGGGCGGTACCCGTGTGGACCGATGATGCCTCCACCAGCTCCATATGTGGAGCATCAAAAAGCTGTAACAATAAGGAATGATGTTAACTTGAAGAAGGAGACTCTAAGGATTGAGCCTGATGAAGCTAATCCTGGCAAGTATCTTGTGGCCTTCACTTTTGATGCCACAGTTCCTGGGAGGTAAAAAAAGTGTCTTTTTTTCATTTTACCTGTTTGTTTATTGGTGAAGTTTGTGCAAATTGATGTTAGTATATGGTATTCGCTTGAGTCTTGACTGTTTCAGTTGGAGTGTATTCAAATATGTGCAGTAGTGTTAGTACTTGTTCATTAGCCGAGGTCTATCGGAATTAACCTCTTTATCTACTAGGTATGGTATGGTCTGTGTACCGCAGACTCGCCTTGTGAGATTAAAGTGAGTATGTTGTTGTTTAGTAGTACTTGGCTCATAAAGTTGAAATAAACAAGAGTTTCAACTTTGTACTTTTCCATCTGAATACTTTAATTTGATTGTTTTTTATGGGGTCAGAGTTAAAAACTTCAACTTGACTTTGGTACTGTGTTAGTATTGTGGAATATAAGTTAAACAATGGCTTAATTGGTACCTTTCCCTTGAATTCTTTAGTTTGATGGTTTCTTACAGGGTCAGAGTTAAAAACTTCAACTTGACTTTGGTACTATGTTAGTATTTTGGAAAAAGGTTTGGTTAAATAATGGTTTTGGAAATTATCACCTTTCCAGTAAAGTCCTTAGTTTGATTGTTTCTTGCAGGGACTATAACTTGACTTTAGTATTATGGAAAAATAGTTAAATAATGGAATTGAAAGTCAATTTGATATATCAGACATGATATTATAGTTTATTTTTGAATATGTAAGTGTATTTAAGTTCTTGAAGTATGTGTAGTTGTATTGTATGATAAAATTTTCAATAGAGTGGCGTCCAACATCTTGGAATGTTCCAGCTGGGGTGAGTATGTGTTTAAAATCGGGATGGAGGCAGAGGTACTAGATTTATTTGATCAAGAAAGTTTTGAACTTTTTAGTCTTTTCATTAATTTTGGAAACACATATAGACACTAGTAGGATTATTGCTATTGGGTTTGCTAGGGATTAATTTGTACTTAAGCTTTCTGTGAGACAATCTTTTGACAACCTCCCGTGTCATAAATGCAGATTGAGAAATTGAGAACTTGATCAGCAAATTTTATTTTATCTTGGACATTAATGTAATTTCATTTTGTTGTTACCAGTCCTGCAATCTCTTTAACAACCTTGGATGAGTAGATAAATGTGTCTATTTTAGAGAAAACAAATGAAGTTTCTGCTGCTAACTTTGAGGATCCTGTATAGCGTGACTTAGCACCAGTGGCAGTGTCATCTTTGTTCAAGCGAAGTCAATTGACACTACTTCGTAAAATTCCAAAACGTAGATAGGTCAATCTTTCTAAATGTATACATTGAATCTCCTTGGCTTCTTCATCTTTTTTTGAATATATATTTTGAATCTCCTTAGCAAAAATCCAGTTATTTTAGTTCTGCCACTGTTTAGCACTACTTTGGGTTATTTGAATAAGCCTTTCGGTCTAAGTAATAATTACTCATCTACAAAAATTGGAAGTGGTCTTTTGTTTAAGCACTGGTGTTGAAATCTCTTGGTATGTACTGAATAGCAACCAATAACTTTGGTCTTCATACAGATTATTGCTTCTTTTTTTTTTTTTTTAATGAAAACGACCTCAAAGAGGCAATTGATATTTGCAGTGGTCTCCTTACAGCTATCCCCTTGTTAGAAAATGATCCATTGAATCTCATGTTGAGATACACATTTAGAAGAAAAAAATATAATATCATCTGAGATTTGGATATGCAAGTAATTTGATAATCAACTAGCTTTTTAGTTTTCTAAAATGATAGTAATATACTAGATCAATTTCTTCTTAGAATGAATACATTATATATTATCTCGCATGCCTAGAAGTTCGACAATGGTGTTTTATACTGAAAACTGAGGTGTTAACTCCCGAAGGTTGAGATCTGATGTACTTGCAGTGATGGTACAATAACAAGGGATCAATGGAGGTGGTAGTGATTTCCAGGGAAAAAATATAATCACGGTGGTTGCTTCTTCTTTGTTGGTCGTATGGAATCTGTGTTCACTTTTCAGTCTTCAGTCATCTGTTGCTGACTCTTAAGAGTAGCATGCACAATGTTGATGACTGTTGGACTTATTAAAGGAATGAGTTTTGTCAACTAGGAGATACTCCCTCCTTTTCAATTTGTTTGTCTGGTTTTGACTTGGTACAAAGGTAAGAAAGTGACGAGACTTTTGAATCTTGTGGTGTTAAACATGTCGTGTGGAGTTGCAAAAAAGGGAACGAGGCATTTTTTTTTGAAACGGACTAAAAAGGAAAGTAAGACAAACAAGTTGAATCGGAGGGAGTAGTAATTACTAAGAACGAGCTCTGATATGCTTTGCAGCTTCTAGGTCACTCACATAAGAATTATCAAGTAGTTGCTTTGTGTGTGGTTTTTATGAAAATTGTAGTGCTTGGCGATATATTGGTGATTCTTCAAGTTAAATTTAGGTGCTTTCAACGGGAGCTAATCCAAGGTATTTCTTGATCTTTTTTCTCTTGCAGCATGACTGTCATTTTCTTTGCAAAAGAAGGTGAAGATTGTTGTTTGACTCCCATGAAGGAAAGCTTGCTTCCACCAGTAACTTTTGAGTTTCAAAAAGGTTTAGCTCAGAAATTTAGGCA</genome_strand>
        <mrna_strand>ATCTCTTCAATTTTTTTACAATATATATCTTGTTTAATCTCATTGTTATCTTTTCTTCTGTGCTGTTTATTCGAAACCCCATTTCGTTTTTTCTTCACTTTTCTACTGTTTCGCGTCATAATTTGAGAAAAGGGGCGAAAGGGTGTTGAAATTTTGTTTATTTTCATGAATGGTTTGATTCAAAGTTTGGGAATTTTCGATTTTTGATTTGGGTTTTTTTGGTTTTAGGTGAAAAGTTTGATTTTTTTTGGTTAAAAATGGGTAATATGGGAAGTAGTGGTGTGAACGGCCGGCGACGGAGTAGTAGCCGGAGGAGCCACCCACCGCCGTCTCCACAACCACAACCACCGCAGCCGGAGATAAACGCGAACAGGTATGTGTTTGCGGCGGCGACGCCTTATCCTACTCAATACCCAAACCCTAATGCTCCGCCGTATTATCAATACCCGGGTTACTATCCTCCACCGCCGGCGGCGATGCCGGTGCCGTTACCAGCTTCGTATGATCATCACCATAGGATGGACCCTGGTCATGCTAATTGGGTTAACGGGCGGTACCCGTGTGGACCGATGATGCCTCCACCAGCTCCGTATGTGGAGCATCAAAAAGCTGTAACAATAAGGAATGATGTTAACTTGAAGAAGGAGACTCTAAGGATTGAGCCTGATGAAGCTAATCCTGGCAAGTATCTTGTGGCCTTCACTTTTGATGCCACAGTTCCTGGGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGACTGTCATTTTCTTTGCAAAAGAAGGTGAAGATTGTTGTTTGACTCCCATGAAGGAAAGCTTGCTTCCACCAGTAACTTTTGAGTTTCAAAAAGGTTTAGCTCAGAAATTTAGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E697749" ref_strand="+" ref_description="SGN-E697749 [FA04AB08]">
      <seq>ccctcttcaatttttttacaatatatatcttgtttaatctcattgttatcttttcttctgtgctgtttattcgaaaccccatttcgttttttcttcacttttctactgtttcgcgtcataatttgagaaaaggggcgaaagggtgttgaaattttgtttattttcatgaatggtttgattcaaagtttgggaattttcgatttttgatttgggtttttttggttttaggtgaaaagtttgattttttttggttaaaaatgggtaatatgggaagtagtggtgtgaacggccggcgacggagtagtagccggaggagccacccaccgccgtctccacaaccacaaccaccgcagccggagataaacgcgaacaggtatgtgtttgcggcggcgacgccttatcctactcaatacccaaaccctaatgctccgccgtattatcaatacccgggttactatcctccaccgccggcggcgatgccggtgccgttaccagcttcgtatgatcatcaccataggatggaccctggtcatgctaattgggttaacgggcggtacccgtgtggaccgatgatgcctccaccagctccgtatgtggagcatcaaaaagctgtaccaataaggaatgatgttaacttgaaaaaggagactctaaggattgagcctgatgaagctaatcctggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="+" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="46593" stop="47873"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46891" g_stop="47571" g_length="681"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="681" r_length="681" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="+" ref_id="SGN-E697749" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697749" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46891" e_stop="47571"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCTTCAATTTTTTTACAATATATATCTTGTTTAATCTCATTGTTATCTTTTCTTCTGTGCTGTTTATTCGAAACCCCATTTCGTTTTTTCTTCACTTTTCTACTGTTTCACGTCATAATTTGAGAAAAGGGGCGAAAGGGTGTTGAAATTTTGTTTATTTTCATGAATGGTTTGATTCAAAGTTTGGGAGTTTTCGATTTTTGATTTGGGTTTTTTTGGTTTTAGGTGAAAAGTTTGATTTTTTTTGGTTAAAAATGGGTAATATGGGAAGTAGTGGTGTGAACGGCCGGCGACGGAGTAGTAGCCGGAGGAGCCACCCACCGCCGTCTCCACAACCACAACCACCGCAGCCGGAGATAAACGCGAACAGGTATGTGTTTGCGGCGGCGACGCCTTATCCTACTCAATACCCAAACCCTAATGCTCCGCCGTATTATCAATACCCGGGTTACTATCCTCCACCGCCGGCGGCGATGCCGGTGCCGTTACCAGCTTCGTATGATCATCACCATAGGATGGACCCTGGTCATGCTAATTGGGTTAACGGGCGGTACCCGTGTGGACCGATGATGCCTCCACCAGCTCCATATGTGGAGCATCAAAAAGCTGTAACAATAAGGAATGATGTTAACTTGAAGAAGGAGACTCTAAGGATTGAGCCTGATGAAGCTAATCCTG</genome_strand>
        <mrna_strand>CCCTCTTCAATTTTTTTACAATATATATCTTGTTTAATCTCATTGTTATCTTTTCTTCTGTGCTGTTTATTCGAAACCCCATTTCGTTTTTTCTTCACTTTTCTACTGTTTCGCGTCATAATTTGAGAAAAGGGGCGAAAGGGTGTTGAAATTTTGTTTATTTTCATGAATGGTTTGATTCAAAGTTTGGGAATTTTCGATTTTTGATTTGGGTTTTTTTGGTTTTAGGTGAAAAGTTTGATTTTTTTTGGTTAAAAATGGGTAATATGGGAAGTAGTGGTGTGAACGGCCGGCGACGGAGTAGTAGCCGGAGGAGCCACCCACCGCCGTCTCCACAACCACAACCACCGCAGCCGGAGATAAACGCGAACAGGTATGTGTTTGCGGCGGCGACGCCTTATCCTACTCAATACCCAAACCCTAATGCTCCGCCGTATTATCAATACCCGGGTTACTATCCTCCACCGCCGGCGGCGATGCCGGTGCCGTTACCAGCTTCGTATGATCATCACCATAGGATGGACCCTGGTCATGCTAATTGGGTTAACGGGCGGTACCCGTGTGGACCGATGATGCCTCCACCAGCTCCGTATGTGGAGCATCAAAAAGCTGTACCAATAAGGAATGATGTTAACTTGAAAAAGGAGACTCTAAGGATTGAGCCTGATGAAGCTAATCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E728716" ref_strand="+" ref_description="SGN-E728716 [LA18CH08]">
      <seq>ttttttttacaatatatatcttgtttaatctcattgttatcttttcttctgtgctgtttattgcgaaaccccatttcgttttttcttcacttttctactgtttcacgtcataatttgagaaaaggggcgaaagggtgttgaaattttgtttattttcatgaatggtttgattcaaagtttgggagttttcgatttttgatttgggtttttttggttttaggtgaaaagtttgattttttttggttaaaaatgggtaatatgggaagtagtggcgtgaacggccggcgacggagtagtagccggaggagccacccaccgccgtttgcacaaccacaaccaccgcagccggagataaacgcgaacaggtatgtgtttgcggcggcgacgccttatcctactcagtaccccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="+" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="46601" stop="47605"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46900" g_stop="47308" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="410" r_length="410" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="+" ref_id="SGN-E728716" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46900" e_stop="47308"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTTTACAATATATATCTTGTTTAATCTCATTGTTATCTTTTCTTCTGTGCTGTTTATT-CGAAACCCCATTTCGTTTTTTCTTCACTTTTCTACTGTTTCACGTCATAATTTGAGAAAAGGGGCGAAAGGGTGTTGAAATTTTGTTTATTTTCATGAATGGTTTGATTCAAAGTTTGGGAGTTTTCGATTTTTGATTTGGGTTTTTTTGGTTTTAGGTGAAAAGTTTGATTTTTTTTGGTTAAAAATGGGTAATATGGGAAGTAGTGGTGTGAACGGCCGGCGACGGAGTAGTAGCCGGAGGAGCCACCCACCGCCGTCTCCACAACCACAACCACCGCAGCCGGAGATAAACGCGAACAGGTATGTGTTTGCGGCGGCGACGCCTTATCCTACTCAATACCCAAA</genome_strand>
        <mrna_strand>TTTTTTTTACAATATATATCTTGTTTAATCTCATTGTTATCTTTTCTTCTGTGCTGTTTATTGCGAAACCCCATTTCGTTTTTTCTTCACTTTTCTACTGTTTCACGTCATAATTTGAGAAAAGGGGCGAAAGGGTGTTGAAATTTTGTTTATTTTCATGAATGGTTTGATTCAAAGTTTGGGAGTTTTCGATTTTTGATTTGGGTTTTTTTGGTTTTAGGTGAAAAGTTTGATTTTTTTTGGTTAAAAATGGGTAATATGGGAAGTAGTGGCGTGAACGGCCGGCGACGGAGTAGTAGCCGGAGGAGCCACCCACCGCCGTTTGCACAACCACAACCACCGCAGCCGGAGATAAACGCGAACAGGTATGTGTTTGCGGCGGCGACGCCTTATCCTACTCAGTACCCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E707502" ref_strand="+" ref_description="SGN-E707502 [FA33AG09]">
      <seq>cgtttattcgaaaccccatttcgttttttcttcacttttctactgtttcgcgtcataatttgagaaaaggggcgaaagggtgttgaaattttgtttattttcatgaatggtttgattcaaagtttgggaattttcgatttttgatttgggtttttttggttttaggtgaaaagtttgattttttttggttaaaaatgggtaatatgggaagtagtggtgtgaacggccggcgacggagtagtagccggaggagccacccaccgccgtctccacaaccacaaccaccgcagccggagataaacgcgaacaggtatgtgtttgcggcggcgacgccttatcctactcaatacccaaaccctaatgctccgccgtattatcaatacccgggttactatcctccaccgccggcggcgatgccggtgccgttaccagcttcgtatgatcatcaccataggatggaccctggtcatgctaattgggttaacgggcggtacccgtgtggaccgatgatgcctccaccagctccgtatgtggagcatcaaaaagctgtaacaataaggaatgatgttaacttgaagaaggagactctaaggattgagcctgatgaagctaatcctggcaagtatcttgtggccttcacttttgatgccacagttcctgggagcatgactgtcattttctttgcaaaagaaggtgaagattgttgtttgactcccatgaaggaaagcttgcttccaccagtaacttttgagtttcaaaaaggtttagctcagaaatttaggcaaccgtctggtactggcattgattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="+" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="46655" stop="50519"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46954" g_stop="47617" g_length="664"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="664" r_length="664" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47618" i_stop="50075" i_length="2458">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50076" g_stop="50219" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="665" r_stop="808" r_length="144" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="+" ref_id="SGN-E707502" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707502" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46954" e_stop="47617"/>
          <exon e_start="50076" e_stop="50219"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTATTCGAAACCCCATTTCGTTTTTTCTTCACTTTTCTACTGTTTCACGTCATAATTTGAGAAAAGGGGCGAAAGGGTGTTGAAATTTTGTTTATTTTCATGAATGGTTTGATTCAAAGTTTGGGAGTTTTCGATTTTTGATTTGGGTTTTTTTGGTTTTAGGTGAAAAGTTTGATTTTTTTTGGTTAAAAATGGGTAATATGGGAAGTAGTGGTGTGAACGGCCGGCGACGGAGTAGTAGCCGGAGGAGCCACCCACCGCCGTCTCCACAACCACAACCACCGCAGCCGGAGATAAACGCGAACAGGTATGTGTTTGCGGCGGCGACGCCTTATCCTACTCAATACCCAAACCCTAATGCTCCGCCGTATTATCAATACCCGGGTTACTATCCTCCACCGCCGGCGGCGATGCCGGTGCCGTTACCAGCTTCGTATGATCATCACCATAGGATGGACCCTGGTCATGCTAATTGGGTTAACGGGCGGTACCCGTGTGGACCGATGATGCCTCCACCAGCTCCATATGTGGAGCATCAAAAAGCTGTAACAATAAGGAATGATGTTAACTTGAAGAAGGAGACTCTAAGGATTGAGCCTGATGAAGCTAATCCTGGCAAGTATCTTGTGGCCTTCACTTTTGATGCCACAGTTCCTGGGAGGTAAAAAAAGTGTCTTTTTTTCATTTTACCTGTTTGTTTATTGGTGAAGTTTGTGCAAATTGATGTTAGTATATGGTATTCGCTTGAGTCTTGACTGTTTCAGTTGGAGTGTATTCAAATATGTGCAGTAGTGTTAGTACTTGTTCATTAGCCGAGGTCTATCGGAATTAACCTCTTTATCTACTAGGTATGGTATGGTCTGTGTACCGCAGACTCGCCTTGTGAGATTAAAGTGAGTATGTTGTTGTTTAGTAGTACTTGGCTCATAAAGTTGAAATAAACAAGAGTTTCAACTTTGTACTTTTCCATCTGAATACTTTAATTTGATTGTTTTTTATGGGGTCAGAGTTAAAAACTTCAACTTGACTTTGGTACTGTGTTAGTATTGTGGAATATAAGTTAAACAATGGCTTAATTGGTACCTTTCCCTTGAATTCTTTAGTTTGATGGTTTCTTACAGGGTCAGAGTTAAAAACTTCAACTTGACTTTGGTACTATGTTAGTATTTTGGAAAAAGGTTTGGTTAAATAATGGTTTTGGAAATTATCACCTTTCCAGTAAAGTCCTTAGTTTGATTGTTTCTTGCAGGGACTATAACTTGACTTTAGTATTATGGAAAAATAGTTAAATAATGGAATTGAAAGTCAATTTGATATATCAGACATGATATTATAGTTTATTTTTGAATATGTAAGTGTATTTAAGTTCTTGAAGTATGTGTAGTTGTATTGTATGATAAAATTTTCAATAGAGTGGCGTCCAACATCTTGGAATGTTCCAGCTGGGGTGAGTATGTGTTTAAAATCGGGATGGAGGCAGAGGTACTAGATTTATTTGATCAAGAAAGTTTTGAACTTTTTAGTCTTTTCATTAATTTTGGAAACACATATAGACACTAGTAGGATTATTGCTATTGGGTTTGCTAGGGATTAATTTGTACTTAAGCTTTCTGTGAGACAATCTTTTGACAACCTCCCGTGTCATAAATGCAGATTGAGAAATTGAGAACTTGATCAGCAAATTTTATTTTATCTTGGACATTAATGTAATTTCATTTTGTTGTTACCAGTCCTGCAATCTCTTTAACAACCTTGGATGAGTAGATAAATGTGTCTATTTTAGAGAAAACAAATGAAGTTTCTGCTGCTAACTTTGAGGATCCTGTATAGCGTGACTTAGCACCAGTGGCAGTGTCATCTTTGTTCAAGCGAAGTCAATTGACACTACTTCGTAAAATTCCAAAACGTAGATAGGTCAATCTTTCTAAATGTATACATTGAATCTCCTTGGCTTCTTCATCTTTTTTTGAATATATATTTTGAATCTCCTTAGCAAAAATCCAGTTATTTTAGTTCTGCCACTGTTTAGCACTACTTTGGGTTATTTGAATAAGCCTTTCGGTCTAAGTAATAATTACTCATCTACAAAAATTGGAAGTGGTCTTTTGTTTAAGCACTGGTGTTGAAATCTCTTGGTATGTACTGAATAGCAACCAATAACTTTGGTCTTCATACAGATTATTGCTTCTTTTTTTTTTTTTTTAATGAAAACGACCTCAAAGAGGCAATTGATATTTGCAGTGGTCTCCTTACAGCTATCCCCTTGTTAGAAAATGATCCATTGAATCTCATGTTGAGATACACATTTAGAAGAAAAAAATATAATATCATCTGAGATTTGGATATGCAAGTAATTTGATAATCAACTAGCTTTTTAGTTTTCTAAAATGATAGTAATATACTAGATCAATTTCTTCTTAGAATGAATACATTATATATTATCTCGCATGCCTAGAAGTTCGACAATGGTGTTTTATACTGAAAACTGAGGTGTTAACTCCCGAAGGTTGAGATCTGATGTACTTGCAGTGATGGTACAATAACAAGGGATCAATGGAGGTGGTAGTGATTTCCAGGGAAAAAATATAATCACGGTGGTTGCTTCTTCTTTGTTGGTCGTATGGAATCTGTGTTCACTTTTCAGTCTTCAGTCATCTGTTGCTGACTCTTAAGAGTAGCATGCACAATGTTGATGACTGTTGGACTTATTAAAGGAATGAGTTTTGTCAACTAGGAGATACTCCCTCCTTTTCAATTTGTTTGTCTGGTTTTGACTTGGTACAAAGGTAAGAAAGTGACGAGACTTTTGAATCTTGTGGTGTTAAACATGTCGTGTGGAGTTGCAAAAAAGGGAACGAGGCATTTTTTTTTGAAACGGACTAAAAAGGAAAGTAAGACAAACAAGTTGAATCGGAGGGAGTAGTAATTACTAAGAACGAGCTCTGATATGCTTTGCAGCTTCTAGGTCACTCACATAAGAATTATCAAGTAGTTGCTTTGTGTGTGGTTTTTATGAAAATTGTAGTGCTTGGCGATATATTGGTGATTCTTCAAGTTAAATTTAGGTGCTTTCAACGGGAGCTAATCCAAGGTATTTCTTGATCTTTTTTCTCTTGCAGCATGACTGTCATTTTCTTTGCAAAAGAAGGTGAAGATTGTTGTTTGACTCCCATGAAGGAAAGCTTGCTTCCACCAGTAACTTTTGAGTTTCAAAAAGGTTTAGCTCAGAAATTTAGGCAACCGTCTGGTACTGGCATTGATTT</genome_strand>
        <mrna_strand>CGTTTATTCGAAACCCCATTTCGTTTTTTCTTCACTTTTCTACTGTTTCGCGTCATAATTTGAGAAAAGGGGCGAAAGGGTGTTGAAATTTTGTTTATTTTCATGAATGGTTTGATTCAAAGTTTGGGAATTTTCGATTTTTGATTTGGGTTTTTTTGGTTTTAGGTGAAAAGTTTGATTTTTTTTGGTTAAAAATGGGTAATATGGGAAGTAGTGGTGTGAACGGCCGGCGACGGAGTAGTAGCCGGAGGAGCCACCCACCGCCGTCTCCACAACCACAACCACCGCAGCCGGAGATAAACGCGAACAGGTATGTGTTTGCGGCGGCGACGCCTTATCCTACTCAATACCCAAACCCTAATGCTCCGCCGTATTATCAATACCCGGGTTACTATCCTCCACCGCCGGCGGCGATGCCGGTGCCGTTACCAGCTTCGTATGATCATCACCATAGGATGGACCCTGGTCATGCTAATTGGGTTAACGGGCGGTACCCGTGTGGACCGATGATGCCTCCACCAGCTCCGTATGTGGAGCATCAAAAAGCTGTAACAATAAGGAATGATGTTAACTTGAAGAAGGAGACTCTAAGGATTGAGCCTGATGAAGCTAATCCTGGCAAGTATCTTGTGGCCTTCACTTTTGATGCCACAGTTCCTGGGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGACTGTCATTTTCTTTGCAAAAGAAGGTGAAGATTGTTGTTTGACTCCCATGAAGGAAAGCTTGCTTCCACCAGTAACTTTTGAGTTTCAAAAAGGTTTAGCTCAGAAATTTAGGCAACCGTCTGGTACTGGCATTGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E730987" ref_strand="+" ref_description="SGN-E730987 [LA25DC06]">
      <seq>ccgttaacgcatttcgttttttcttcacttttctactgtttcgcgtcataatttgagaaaaggggcgaaagggtgttgaaattttgtttattttcatgaatggtttgattcaaagtttgggaattttcgatttttgatttgggtttttttggttttaggtgaaaagtttgattttttttggttaaaaatgggtaatatgggaagtagtggtgtgaacggccggcgacggagtagtagccggaggagccacccaccgccgtctccacaaccacaaccaccgcagccggagataaacgcgaacaggtatgtgtttgcggcggcgacgccttatcctactcaatacccaaaccctaatgctccgccgtattatcaatacccgggttactatcctccaccgccggcggcgatgccggtgccgttaccagcttcgtatgatcatcaccataggatggaccctggtcatgctaattgggttaacgggcggtacccgtgtggaccgatgatgcctccaccagctccgtatgtggagcatcaaaaagctgtaacaataaggaatgatgttaacttgaagaaggagactctaaggattgagcctgatgaagctaatcctggcaagtatcttgtggccttcacttttgatgccacagttcctgggagcatgactgtcattttctttgcaaaagaaggtgaagattgttgtttgactcccatgaaggaaagcttgcttccaccagtaacttttgagtttcaaaaggtttagctcagaaatttaggcaaccgtctggtactggcattgatttttcatgtttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="+" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="46665" stop="50531"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46961" g_stop="47617" g_length="657"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="657" r_length="657" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47618" i_stop="50075" i_length="2458">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50076" g_stop="50231" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="658" r_stop="811" r_length="154" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="+" ref_id="SGN-E730987" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>813</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730987" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46961" e_stop="47617"/>
          <exon e_start="50076" e_stop="50231"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAAACCCCATTTCGTTTTTTCTTCACTTTTCTACTGTTTCACGTCATAATTTGAGAAAAGGGGCGAAAGGGTGTTGAAATTTTGTTTATTTTCATGAATGGTTTGATTCAAAGTTTGGGAGTTTTCGATTTTTGATTTGGGTTTTTTTGGTTTTAGGTGAAAAGTTTGATTTTTTTTGGTTAAAAATGGGTAATATGGGAAGTAGTGGTGTGAACGGCCGGCGACGGAGTAGTAGCCGGAGGAGCCACCCACCGCCGTCTCCACAACCACAACCACCGCAGCCGGAGATAAACGCGAACAGGTATGTGTTTGCGGCGGCGACGCCTTATCCTACTCAATACCCAAACCCTAATGCTCCGCCGTATTATCAATACCCGGGTTACTATCCTCCACCGCCGGCGGCGATGCCGGTGCCGTTACCAGCTTCGTATGATCATCACCATAGGATGGACCCTGGTCATGCTAATTGGGTTAACGGGCGGTACCCGTGTGGACCGATGATGCCTCCACCAGCTCCATATGTGGAGCATCAAAAAGCTGTAACAATAAGGAATGATGTTAACTTGAAGAAGGAGACTCTAAGGATTGAGCCTGATGAAGCTAATCCTGGCAAGTATCTTGTGGCCTTCACTTTTGATGCCACAGTTCCTGGGAGGTAAAAAAAGTGTCTTTTTTTCATTTTACCTGTTTGTTTATTGGTGAAGTTTGTGCAAATTGATGTTAGTATATGGTATTCGCTTGAGTCTTGACTGTTTCAGTTGGAGTGTATTCAAATATGTGCAGTAGTGTTAGTACTTGTTCATTAGCCGAGGTCTATCGGAATTAACCTCTTTATCTACTAGGTATGGTATGGTCTGTGTACCGCAGACTCGCCTTGTGAGATTAAAGTGAGTATGTTGTTGTTTAGTAGTACTTGGCTCATAAAGTTGAAATAAACAAGAGTTTCAACTTTGTACTTTTCCATCTGAATACTTTAATTTGATTGTTTTTTATGGGGTCAGAGTTAAAAACTTCAACTTGACTTTGGTACTGTGTTAGTATTGTGGAATATAAGTTAAACAATGGCTTAATTGGTACCTTTCCCTTGAATTCTTTAGTTTGATGGTTTCTTACAGGGTCAGAGTTAAAAACTTCAACTTGACTTTGGTACTATGTTAGTATTTTGGAAAAAGGTTTGGTTAAATAATGGTTTTGGAAATTATCACCTTTCCAGTAAAGTCCTTAGTTTGATTGTTTCTTGCAGGGACTATAACTTGACTTTAGTATTATGGAAAAATAGTTAAATAATGGAATTGAAAGTCAATTTGATATATCAGACATGATATTATAGTTTATTTTTGAATATGTAAGTGTATTTAAGTTCTTGAAGTATGTGTAGTTGTATTGTATGATAAAATTTTCAATAGAGTGGCGTCCAACATCTTGGAATGTTCCAGCTGGGGTGAGTATGTGTTTAAAATCGGGATGGAGGCAGAGGTACTAGATTTATTTGATCAAGAAAGTTTTGAACTTTTTAGTCTTTTCATTAATTTTGGAAACACATATAGACACTAGTAGGATTATTGCTATTGGGTTTGCTAGGGATTAATTTGTACTTAAGCTTTCTGTGAGACAATCTTTTGACAACCTCCCGTGTCATAAATGCAGATTGAGAAATTGAGAACTTGATCAGCAAATTTTATTTTATCTTGGACATTAATGTAATTTCATTTTGTTGTTACCAGTCCTGCAATCTCTTTAACAACCTTGGATGAGTAGATAAATGTGTCTATTTTAGAGAAAACAAATGAAGTTTCTGCTGCTAACTTTGAGGATCCTGTATAGCGTGACTTAGCACCAGTGGCAGTGTCATCTTTGTTCAAGCGAAGTCAATTGACACTACTTCGTAAAATTCCAAAACGTAGATAGGTCAATCTTTCTAAATGTATACATTGAATCTCCTTGGCTTCTTCATCTTTTTTTGAATATATATTTTGAATCTCCTTAGCAAAAATCCAGTTATTTTAGTTCTGCCACTGTTTAGCACTACTTTGGGTTATTTGAATAAGCCTTTCGGTCTAAGTAATAATTACTCATCTACAAAAATTGGAAGTGGTCTTTTGTTTAAGCACTGGTGTTGAAATCTCTTGGTATGTACTGAATAGCAACCAATAACTTTGGTCTTCATACAGATTATTGCTTCTTTTTTTTTTTTTTTAATGAAAACGACCTCAAAGAGGCAATTGATATTTGCAGTGGTCTCCTTACAGCTATCCCCTTGTTAGAAAATGATCCATTGAATCTCATGTTGAGATACACATTTAGAAGAAAAAAATATAATATCATCTGAGATTTGGATATGCAAGTAATTTGATAATCAACTAGCTTTTTAGTTTTCTAAAATGATAGTAATATACTAGATCAATTTCTTCTTAGAATGAATACATTATATATTATCTCGCATGCCTAGAAGTTCGACAATGGTGTTTTATACTGAAAACTGAGGTGTTAACTCCCGAAGGTTGAGATCTGATGTACTTGCAGTGATGGTACAATAACAAGGGATCAATGGAGGTGGTAGTGATTTCCAGGGAAAAAATATAATCACGGTGGTTGCTTCTTCTTTGTTGGTCGTATGGAATCTGTGTTCACTTTTCAGTCTTCAGTCATCTGTTGCTGACTCTTAAGAGTAGCATGCACAATGTTGATGACTGTTGGACTTATTAAAGGAATGAGTTTTGTCAACTAGGAGATACTCCCTCCTTTTCAATTTGTTTGTCTGGTTTTGACTTGGTACAAAGGTAAGAAAGTGACGAGACTTTTGAATCTTGTGGTGTTAAACATGTCGTGTGGAGTTGCAAAAAAGGGAACGAGGCATTTTTTTTTGAAACGGACTAAAAAGGAAAGTAAGACAAACAAGTTGAATCGGAGGGAGTAGTAATTACTAAGAACGAGCTCTGATATGCTTTGCAGCTTCTAGGTCACTCACATAAGAATTATCAAGTAGTTGCTTTGTGTGTGGTTTTTATGAAAATTGTAGTGCTTGGCGATATATTGGTGATTCTTCAAGTTAAATTTAGGTGCTTTCAACGGGAGCTAATCCAAGGTATTTCTTGATCTTTTTTCTCTTGCAGCATGACTGTCATTTTCTTTGCAAAAGAAGGTGAAGATTGTTGTTTGACTCCCATGAAGGAAAGCTTGCTTCCACCAGTAACTTTTGAGTTTCAAAAAGGTTTAGCTCAGAAATTTAGGCAACCGTCTGGTACTGGCATTGATTTTTCAATGTTTGA</genome_strand>
        <mrna_strand>CCGTTAACGCATTTCGTTTTTTCTTCACTTTTCTACTGTTTCGCGTCATAATTTGAGAAAAGGGGCGAAAGGGTGTTGAAATTTTGTTTATTTTCATGAATGGTTTGATTCAAAGTTTGGGAATTTTCGATTTTTGATTTGGGTTTTTTTGGTTTTAGGTGAAAAGTTTGATTTTTTTTGGTTAAAAATGGGTAATATGGGAAGTAGTGGTGTGAACGGCCGGCGACGGAGTAGTAGCCGGAGGAGCCACCCACCGCCGTCTCCACAACCACAACCACCGCAGCCGGAGATAAACGCGAACAGGTATGTGTTTGCGGCGGCGACGCCTTATCCTACTCAATACCCAAACCCTAATGCTCCGCCGTATTATCAATACCCGGGTTACTATCCTCCACCGCCGGCGGCGATGCCGGTGCCGTTACCAGCTTCGTATGATCATCACCATAGGATGGACCCTGGTCATGCTAATTGGGTTAACGGGCGGTACCCGTGTGGACCGATGATGCCTCCACCAGCTCCGTATGTGGAGCATCAAAAAGCTGTAACAATAAGGAATGATGTTAACTTGAAGAAGGAGACTCTAAGGATTGAGCCTGATGAAGCTAATCCTGGCAAGTATCTTGTGGCCTTCACTTTTGATGCCACAGTTCCTGGGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGACTGTCATTTTCTTTGCAAAAGAAGGTGAAGATTGTTGTTTGACTCCCATGAAGGAAAGCTTGCTTCCACCAGTAACTTTTGAGTTTC-AAAAGGTTTAGCTCAGAAATTTAGGCAACCGTCTGGTACTGGCATTGATTTTTC-ATGTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E726784" ref_strand="+" ref_description="SGN-E726784 [LA12DC03]">
      <seq>ttcgttttttcttcacttttctactgtttcgcgtcataatttgagaaaaggggcgaaagggtgttgaaattttgtttattttcatgaatggtttgattcaaagtttgggaattttcgatttttgatttgggtttttttggttttaggtgaaaagtttgattttttttggttaaaaatgggtaatatgggaagtagtggtgtgaacggccggcgacggagtagtagccggaggagccacccaccgccgtctccacaaccacaaccaccgcagccggagataaacgcgaacaggtatgtgtttgcggcggcgacgccttatcctactcaatacccaaaccctaatgctccgccgtattatcaatacccgggttactatcctccaccgccggcggcgatgccggtgccgttaccagcttcgtatgatcatcaccataggatggaccctggtcatgctaattgggttaacgggcggtacccgtgtggaccgatgatgcctccaccagctccgtatgtggagcatcaaaaagctgtaacaataaggaatgatgttaacttgaagaaggagactctaaggattgagcctgatgaagctaatcctggcaagtatcttgtggccttcacttttgatgccacagttcctgggagcatgactgtcattttctttgcaaaagaaggtgaagattgttgtttgactcccatgaaggaaagcttgcttccaccagtaacttttgagtttcaaaaaggtttagctcagaaatttaggcaaccgtctggtactggcattgatttttcaatgtttgaagaggcagaattgtccaaagatagtgaggcagatgtgtatccacttgcagtcaaggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="+" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="46673" stop="50588"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46973" g_stop="47617" g_length="645"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="645" r_length="645" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47618" i_stop="50075" i_length="2458">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50076" g_stop="50288" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="646" r_stop="858" r_length="213" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="+" ref_id="SGN-E726784" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>858</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726784" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46973" e_stop="47617"/>
          <exon e_start="50076" e_stop="50288"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGTTTTTTCTTCACTTTTCTACTGTTTCACGTCATAATTTGAGAAAAGGGGCGAAAGGGTGTTGAAATTTTGTTTATTTTCATGAATGGTTTGATTCAAAGTTTGGGAGTTTTCGATTTTTGATTTGGGTTTTTTTGGTTTTAGGTGAAAAGTTTGATTTTTTTTGGTTAAAAATGGGTAATATGGGAAGTAGTGGTGTGAACGGCCGGCGACGGAGTAGTAGCCGGAGGAGCCACCCACCGCCGTCTCCACAACCACAACCACCGCAGCCGGAGATAAACGCGAACAGGTATGTGTTTGCGGCGGCGACGCCTTATCCTACTCAATACCCAAACCCTAATGCTCCGCCGTATTATCAATACCCGGGTTACTATCCTCCACCGCCGGCGGCGATGCCGGTGCCGTTACCAGCTTCGTATGATCATCACCATAGGATGGACCCTGGTCATGCTAATTGGGTTAACGGGCGGTACCCGTGTGGACCGATGATGCCTCCACCAGCTCCATATGTGGAGCATCAAAAAGCTGTAACAATAAGGAATGATGTTAACTTGAAGAAGGAGACTCTAAGGATTGAGCCTGATGAAGCTAATCCTGGCAAGTATCTTGTGGCCTTCACTTTTGATGCCACAGTTCCTGGGAGGTAAAAAAAGTGTCTTTTTTTCATTTTACCTGTTTGTTTATTGGTGAAGTTTGTGCAAATTGATGTTAGTATATGGTATTCGCTTGAGTCTTGACTGTTTCAGTTGGAGTGTATTCAAATATGTGCAGTAGTGTTAGTACTTGTTCATTAGCCGAGGTCTATCGGAATTAACCTCTTTATCTACTAGGTATGGTATGGTCTGTGTACCGCAGACTCGCCTTGTGAGATTAAAGTGAGTATGTTGTTGTTTAGTAGTACTTGGCTCATAAAGTTGAAATAAACAAGAGTTTCAACTTTGTACTTTTCCATCTGAATACTTTAATTTGATTGTTTTTTATGGGGTCAGAGTTAAAAACTTCAACTTGACTTTGGTACTGTGTTAGTATTGTGGAATATAAGTTAAACAATGGCTTAATTGGTACCTTTCCCTTGAATTCTTTAGTTTGATGGTTTCTTACAGGGTCAGAGTTAAAAACTTCAACTTGACTTTGGTACTATGTTAGTATTTTGGAAAAAGGTTTGGTTAAATAATGGTTTTGGAAATTATCACCTTTCCAGTAAAGTCCTTAGTTTGATTGTTTCTTGCAGGGACTATAACTTGACTTTAGTATTATGGAAAAATAGTTAAATAATGGAATTGAAAGTCAATTTGATATATCAGACATGATATTATAGTTTATTTTTGAATATGTAAGTGTATTTAAGTTCTTGAAGTATGTGTAGTTGTATTGTATGATAAAATTTTCAATAGAGTGGCGTCCAACATCTTGGAATGTTCCAGCTGGGGTGAGTATGTGTTTAAAATCGGGATGGAGGCAGAGGTACTAGATTTATTTGATCAAGAAAGTTTTGAACTTTTTAGTCTTTTCATTAATTTTGGAAACACATATAGACACTAGTAGGATTATTGCTATTGGGTTTGCTAGGGATTAATTTGTACTTAAGCTTTCTGTGAGACAATCTTTTGACAACCTCCCGTGTCATAAATGCAGATTGAGAAATTGAGAACTTGATCAGCAAATTTTATTTTATCTTGGACATTAATGTAATTTCATTTTGTTGTTACCAGTCCTGCAATCTCTTTAACAACCTTGGATGAGTAGATAAATGTGTCTATTTTAGAGAAAACAAATGAAGTTTCTGCTGCTAACTTTGAGGATCCTGTATAGCGTGACTTAGCACCAGTGGCAGTGTCATCTTTGTTCAAGCGAAGTCAATTGACACTACTTCGTAAAATTCCAAAACGTAGATAGGTCAATCTTTCTAAATGTATACATTGAATCTCCTTGGCTTCTTCATCTTTTTTTGAATATATATTTTGAATCTCCTTAGCAAAAATCCAGTTATTTTAGTTCTGCCACTGTTTAGCACTACTTTGGGTTATTTGAATAAGCCTTTCGGTCTAAGTAATAATTACTCATCTACAAAAATTGGAAGTGGTCTTTTGTTTAAGCACTGGTGTTGAAATCTCTTGGTATGTACTGAATAGCAACCAATAACTTTGGTCTTCATACAGATTATTGCTTCTTTTTTTTTTTTTTTAATGAAAACGACCTCAAAGAGGCAATTGATATTTGCAGTGGTCTCCTTACAGCTATCCCCTTGTTAGAAAATGATCCATTGAATCTCATGTTGAGATACACATTTAGAAGAAAAAAATATAATATCATCTGAGATTTGGATATGCAAGTAATTTGATAATCAACTAGCTTTTTAGTTTTCTAAAATGATAGTAATATACTAGATCAATTTCTTCTTAGAATGAATACATTATATATTATCTCGCATGCCTAGAAGTTCGACAATGGTGTTTTATACTGAAAACTGAGGTGTTAACTCCCGAAGGTTGAGATCTGATGTACTTGCAGTGATGGTACAATAACAAGGGATCAATGGAGGTGGTAGTGATTTCCAGGGAAAAAATATAATCACGGTGGTTGCTTCTTCTTTGTTGGTCGTATGGAATCTGTGTTCACTTTTCAGTCTTCAGTCATCTGTTGCTGACTCTTAAGAGTAGCATGCACAATGTTGATGACTGTTGGACTTATTAAAGGAATGAGTTTTGTCAACTAGGAGATACTCCCTCCTTTTCAATTTGTTTGTCTGGTTTTGACTTGGTACAAAGGTAAGAAAGTGACGAGACTTTTGAATCTTGTGGTGTTAAACATGTCGTGTGGAGTTGCAAAAAAGGGAACGAGGCATTTTTTTTTGAAACGGACTAAAAAGGAAAGTAAGACAAACAAGTTGAATCGGAGGGAGTAGTAATTACTAAGAACGAGCTCTGATATGCTTTGCAGCTTCTAGGTCACTCACATAAGAATTATCAAGTAGTTGCTTTGTGTGTGGTTTTTATGAAAATTGTAGTGCTTGGCGATATATTGGTGATTCTTCAAGTTAAATTTAGGTGCTTTCAACGGGAGCTAATCCAAGGTATTTCTTGATCTTTTTTCTCTTGCAGCATGACTGTCATTTTCTTTGCAAAAGAAGGTGAAGATTGTTGTTTGACTCCCATGAAGGAAAGCTTGCTTCCACCAGTAACTTTTGAGTTTCAAAAAGGTTTAGCTCAGAAATTTAGGCAACCGTCTGGTACTGGCATTGATTTTTCAATGTTTGAAGAGGCAGAATTGTCCAAAGATAGTGAGGCAGATGTGTATCCACTTGCAGTCAAGGC</genome_strand>
        <mrna_strand>TTCGTTTTTTCTTCACTTTTCTACTGTTTCGCGTCATAATTTGAGAAAAGGGGCGAAAGGGTGTTGAAATTTTGTTTATTTTCATGAATGGTTTGATTCAAAGTTTGGGAATTTTCGATTTTTGATTTGGGTTTTTTTGGTTTTAGGTGAAAAGTTTGATTTTTTTTGGTTAAAAATGGGTAATATGGGAAGTAGTGGTGTGAACGGCCGGCGACGGAGTAGTAGCCGGAGGAGCCACCCACCGCCGTCTCCACAACCACAACCACCGCAGCCGGAGATAAACGCGAACAGGTATGTGTTTGCGGCGGCGACGCCTTATCCTACTCAATACCCAAACCCTAATGCTCCGCCGTATTATCAATACCCGGGTTACTATCCTCCACCGCCGGCGGCGATGCCGGTGCCGTTACCAGCTTCGTATGATCATCACCATAGGATGGACCCTGGTCATGCTAATTGGGTTAACGGGCGGTACCCGTGTGGACCGATGATGCCTCCACCAGCTCCGTATGTGGAGCATCAAAAAGCTGTAACAATAAGGAATGATGTTAACTTGAAGAAGGAGACTCTAAGGATTGAGCCTGATGAAGCTAATCCTGGCAAGTATCTTGTGGCCTTCACTTTTGATGCCACAGTTCCTGGGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGACTGTCATTTTCTTTGCAAAAGAAGGTGAAGATTGTTGTTTGACTCCCATGAAGGAAAGCTTGCTTCCACCAGTAACTTTTGAGTTTCAAAAAGGTTTAGCTCAGAAATTTAGGCAACCGTCTGGTACTGGCATTGATTTTTCAATGTTTGAAGAGGCAGAATTGTCCAAAGATAGTGAGGCAGATGTGTATCCACTTGCAGTCAAGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E328411" ref_strand="+" ref_description="SGN-E328411 [cTOC-21-H17]">
      <seq>gaaaaggggcgaaagggtgttgaaattttgtttattttcatgaatggtttgattcaaagtttgggagttttcgatttttgatttgggtttttttggttttaggtgaaaagtttgattttttttggttaaaaatgggtaatatgggaagtagtggtgtgaacggccggcgacggagtagtagccggaggagccacccaccgccgtctccacaaccacaaccaccgcagccggagataaacgcgaacaggtatgtgtttgcggcggcgacgccttatcctactcaatacccaaaccctaatgctccgccgtattatcaatacccgggttactatcctccaccgccggcggcgatgccggtgccgttaccagcttcgtatgatcatcaccataggatggaccctggtcatgctaattgggttaacgggcggtacccgtgtggaccgatgatgcctccaccagctccatatgtggagcatcaaaaagctgtaacaataaggaatgatgttaacttgaagaaggagactctaaggattgagcctgatgaagctaatcctggcaagtatcttgtggccttcacttttgatgccacagttcctgggagcatgactgtcattttctttgcaaaagaaggtgaagattgttgtttgactcccatgaaaggaagcttgcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="+" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="46717" stop="50446"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47017" g_stop="47617" g_length="601"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="601" r_length="601" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47618" i_stop="50075" i_length="2458">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50076" g_stop="50146" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="602" r_stop="672" r_length="71" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="+" ref_id="SGN-E328411" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328411" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47017" e_stop="47617"/>
          <exon e_start="50076" e_stop="50146"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAGGGGCGAAAGGGTGTTGAAATTTTGTTTATTTTCATGAATGGTTTGATTCAAAGTTTGGGAGTTTTCGATTTTTGATTTGGGTTTTTTTGGTTTTAGGTGAAAAGTTTGATTTTTTTTGGTTAAAAATGGGTAATATGGGAAGTAGTGGTGTGAACGGCCGGCGACGGAGTAGTAGCCGGAGGAGCCACCCACCGCCGTCTCCACAACCACAACCACCGCAGCCGGAGATAAACGCGAACAGGTATGTGTTTGCGGCGGCGACGCCTTATCCTACTCAATACCCAAACCCTAATGCTCCGCCGTATTATCAATACCCGGGTTACTATCCTCCACCGCCGGCGGCGATGCCGGTGCCGTTACCAGCTTCGTATGATCATCACCATAGGATGGACCCTGGTCATGCTAATTGGGTTAACGGGCGGTACCCGTGTGGACCGATGATGCCTCCACCAGCTCCATATGTGGAGCATCAAAAAGCTGTAACAATAAGGAATGATGTTAACTTGAAGAAGGAGACTCTAAGGATTGAGCCTGATGAAGCTAATCCTGGCAAGTATCTTGTGGCCTTCACTTTTGATGCCACAGTTCCTGGGAGGTAAAAAAAGTGTCTTTTTTTCATTTTACCTGTTTGTTTATTGGTGAAGTTTGTGCAAATTGATGTTAGTATATGGTATTCGCTTGAGTCTTGACTGTTTCAGTTGGAGTGTATTCAAATATGTGCAGTAGTGTTAGTACTTGTTCATTAGCCGAGGTCTATCGGAATTAACCTCTTTATCTACTAGGTATGGTATGGTCTGTGTACCGCAGACTCGCCTTGTGAGATTAAAGTGAGTATGTTGTTGTTTAGTAGTACTTGGCTCATAAAGTTGAAATAAACAAGAGTTTCAACTTTGTACTTTTCCATCTGAATACTTTAATTTGATTGTTTTTTATGGGGTCAGAGTTAAAAACTTCAACTTGACTTTGGTACTGTGTTAGTATTGTGGAATATAAGTTAAACAATGGCTTAATTGGTACCTTTCCCTTGAATTCTTTAGTTTGATGGTTTCTTACAGGGTCAGAGTTAAAAACTTCAACTTGACTTTGGTACTATGTTAGTATTTTGGAAAAAGGTTTGGTTAAATAATGGTTTTGGAAATTATCACCTTTCCAGTAAAGTCCTTAGTTTGATTGTTTCTTGCAGGGACTATAACTTGACTTTAGTATTATGGAAAAATAGTTAAATAATGGAATTGAAAGTCAATTTGATATATCAGACATGATATTATAGTTTATTTTTGAATATGTAAGTGTATTTAAGTTCTTGAAGTATGTGTAGTTGTATTGTATGATAAAATTTTCAATAGAGTGGCGTCCAACATCTTGGAATGTTCCAGCTGGGGTGAGTATGTGTTTAAAATCGGGATGGAGGCAGAGGTACTAGATTTATTTGATCAAGAAAGTTTTGAACTTTTTAGTCTTTTCATTAATTTTGGAAACACATATAGACACTAGTAGGATTATTGCTATTGGGTTTGCTAGGGATTAATTTGTACTTAAGCTTTCTGTGAGACAATCTTTTGACAACCTCCCGTGTCATAAATGCAGATTGAGAAATTGAGAACTTGATCAGCAAATTTTATTTTATCTTGGACATTAATGTAATTTCATTTTGTTGTTACCAGTCCTGCAATCTCTTTAACAACCTTGGATGAGTAGATAAATGTGTCTATTTTAGAGAAAACAAATGAAGTTTCTGCTGCTAACTTTGAGGATCCTGTATAGCGTGACTTAGCACCAGTGGCAGTGTCATCTTTGTTCAAGCGAAGTCAATTGACACTACTTCGTAAAATTCCAAAACGTAGATAGGTCAATCTTTCTAAATGTATACATTGAATCTCCTTGGCTTCTTCATCTTTTTTTGAATATATATTTTGAATCTCCTTAGCAAAAATCCAGTTATTTTAGTTCTGCCACTGTTTAGCACTACTTTGGGTTATTTGAATAAGCCTTTCGGTCTAAGTAATAATTACTCATCTACAAAAATTGGAAGTGGTCTTTTGTTTAAGCACTGGTGTTGAAATCTCTTGGTATGTACTGAATAGCAACCAATAACTTTGGTCTTCATACAGATTATTGCTTCTTTTTTTTTTTTTTTAATGAAAACGACCTCAAAGAGGCAATTGATATTTGCAGTGGTCTCCTTACAGCTATCCCCTTGTTAGAAAATGATCCATTGAATCTCATGTTGAGATACACATTTAGAAGAAAAAAATATAATATCATCTGAGATTTGGATATGCAAGTAATTTGATAATCAACTAGCTTTTTAGTTTTCTAAAATGATAGTAATATACTAGATCAATTTCTTCTTAGAATGAATACATTATATATTATCTCGCATGCCTAGAAGTTCGACAATGGTGTTTTATACTGAAAACTGAGGTGTTAACTCCCGAAGGTTGAGATCTGATGTACTTGCAGTGATGGTACAATAACAAGGGATCAATGGAGGTGGTAGTGATTTCCAGGGAAAAAATATAATCACGGTGGTTGCTTCTTCTTTGTTGGTCGTATGGAATCTGTGTTCACTTTTCAGTCTTCAGTCATCTGTTGCTGACTCTTAAGAGTAGCATGCACAATGTTGATGACTGTTGGACTTATTAAAGGAATGAGTTTTGTCAACTAGGAGATACTCCCTCCTTTTCAATTTGTTTGTCTGGTTTTGACTTGGTACAAAGGTAAGAAAGTGACGAGACTTTTGAATCTTGTGGTGTTAAACATGTCGTGTGGAGTTGCAAAAAAGGGAACGAGGCATTTTTTTTTGAAACGGACTAAAAAGGAAAGTAAGACAAACAAGTTGAATCGGAGGGAGTAGTAATTACTAAGAACGAGCTCTGATATGCTTTGCAGCTTCTAGGTCACTCACATAAGAATTATCAAGTAGTTGCTTTGTGTGTGGTTTTTATGAAAATTGTAGTGCTTGGCGATATATTGGTGATTCTTCAAGTTAAATTTAGGTGCTTTCAACGGGAGCTAATCCAAGGTATTTCTTGATCTTTTTTCTCTTGCAGCATGACTGTCATTTTCTTTGCAAAAGAAGGTGAAGATTGTTGTTTGACTCCCATGAAGGAAAGCTTGCTTC</genome_strand>
        <mrna_strand>GAAAAGGGGCGAAAGGGTGTTGAAATTTTGTTTATTTTCATGAATGGTTTGATTCAAAGTTTGGGAGTTTTCGATTTTTGATTTGGGTTTTTTTGGTTTTAGGTGAAAAGTTTGATTTTTTTTGGTTAAAAATGGGTAATATGGGAAGTAGTGGTGTGAACGGCCGGCGACGGAGTAGTAGCCGGAGGAGCCACCCACCGCCGTCTCCACAACCACAACCACCGCAGCCGGAGATAAACGCGAACAGGTATGTGTTTGCGGCGGCGACGCCTTATCCTACTCAATACCCAAACCCTAATGCTCCGCCGTATTATCAATACCCGGGTTACTATCCTCCACCGCCGGCGGCGATGCCGGTGCCGTTACCAGCTTCGTATGATCATCACCATAGGATGGACCCTGGTCATGCTAATTGGGTTAACGGGCGGTACCCGTGTGGACCGATGATGCCTCCACCAGCTCCATATGTGGAGCATCAAAAAGCTGTAACAATAAGGAATGATGTTAACTTGAAGAAGGAGACTCTAAGGATTGAGCCTGATGAAGCTAATCCTGGCAAGTATCTTGTGGCCTTCACTTTTGATGCCACAGTTCCTGGGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGACTGTCATTTTCTTTGCAAAAGAAGGTGAAGATTGTTGTTTGACTCCCATGAAAGGAAGCTTGCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E728857" ref_strand="+" ref_description="SGN-E728857 [LA19AG03]">
      <seq>gtttgattttttttggttaaaaatgggtaatatgggaagtagtggtgtgaacggccggcgacggagtagtagccggaggagccacccaccgccgtctccacaaccacaaccaccgcagccggagataaacgcgaacaggtatgtgtttgcggcggcgacgccttatcctactcaatacccaaaccctaatgctccgccgtattatcaatacccgggttactatcctccaccgccggcggcgatgccggtgccgttaccagcttcgtatgatcatcaccataggatggaccctggtcatgctaattgggttaacgggcggtacccgtgtggaccgatgatgcctccaccagctccgtatgtggagcatcaaaaagctgtaacaataaggaatgatgttaacttgaagaaggagactctaaggattgagcctgatgaacctaatcctggctagtatgttgtggccttcacttttgatgccacagttcctgggagcatgactgtcattttctttgcaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="+" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="46826" stop="50400"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47126" g_stop="47617" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="492" r_length="492" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47618" i_stop="50075" i_length="2458">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.878" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50076" g_stop="50100" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="517" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="+" ref_id="SGN-E728857" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728857" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47126" e_stop="47617"/>
          <exon e_start="50076" e_stop="50100"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGATTTTTTTTGGTTAAAAATGGGTAATATGGGAAGTAGTGGTGTGAACGGCCGGCGACGGAGTAGTAGCCGGAGGAGCCACCCACCGCCGTCTCCACAACCACAACCACCGCAGCCGGAGATAAACGCGAACAGGTATGTGTTTGCGGCGGCGACGCCTTATCCTACTCAATACCCAAACCCTAATGCTCCGCCGTATTATCAATACCCGGGTTACTATCCTCCACCGCCGGCGGCGATGCCGGTGCCGTTACCAGCTTCGTATGATCATCACCATAGGATGGACCCTGGTCATGCTAATTGGGTTAACGGGCGGTACCCGTGTGGACCGATGATGCCTCCACCAGCTCCATATGTGGAGCATCAAAAAGCTGTAACAATAAGGAATGATGTTAACTTGAAGAAGGAGACTCTAAGGATTGAGCCTGATGAAGCTAATCCTGGCAAGTATCTTGTGGCCTTCACTTTTGATGCCACAGTTCCTGGGAGGTAAAAAAAGTGTCTTTTTTTCATTTTACCTGTTTGTTTATTGGTGAAGTTTGTGCAAATTGATGTTAGTATATGGTATTCGCTTGAGTCTTGACTGTTTCAGTTGGAGTGTATTCAAATATGTGCAGTAGTGTTAGTACTTGTTCATTAGCCGAGGTCTATCGGAATTAACCTCTTTATCTACTAGGTATGGTATGGTCTGTGTACCGCAGACTCGCCTTGTGAGATTAAAGTGAGTATGTTGTTGTTTAGTAGTACTTGGCTCATAAAGTTGAAATAAACAAGAGTTTCAACTTTGTACTTTTCCATCTGAATACTTTAATTTGATTGTTTTTTATGGGGTCAGAGTTAAAAACTTCAACTTGACTTTGGTACTGTGTTAGTATTGTGGAATATAAGTTAAACAATGGCTTAATTGGTACCTTTCCCTTGAATTCTTTAGTTTGATGGTTTCTTACAGGGTCAGAGTTAAAAACTTCAACTTGACTTTGGTACTATGTTAGTATTTTGGAAAAAGGTTTGGTTAAATAATGGTTTTGGAAATTATCACCTTTCCAGTAAAGTCCTTAGTTTGATTGTTTCTTGCAGGGACTATAACTTGACTTTAGTATTATGGAAAAATAGTTAAATAATGGAATTGAAAGTCAATTTGATATATCAGACATGATATTATAGTTTATTTTTGAATATGTAAGTGTATTTAAGTTCTTGAAGTATGTGTAGTTGTATTGTATGATAAAATTTTCAATAGAGTGGCGTCCAACATCTTGGAATGTTCCAGCTGGGGTGAGTATGTGTTTAAAATCGGGATGGAGGCAGAGGTACTAGATTTATTTGATCAAGAAAGTTTTGAACTTTTTAGTCTTTTCATTAATTTTGGAAACACATATAGACACTAGTAGGATTATTGCTATTGGGTTTGCTAGGGATTAATTTGTACTTAAGCTTTCTGTGAGACAATCTTTTGACAACCTCCCGTGTCATAAATGCAGATTGAGAAATTGAGAACTTGATCAGCAAATTTTATTTTATCTTGGACATTAATGTAATTTCATTTTGTTGTTACCAGTCCTGCAATCTCTTTAACAACCTTGGATGAGTAGATAAATGTGTCTATTTTAGAGAAAACAAATGAAGTTTCTGCTGCTAACTTTGAGGATCCTGTATAGCGTGACTTAGCACCAGTGGCAGTGTCATCTTTGTTCAAGCGAAGTCAATTGACACTACTTCGTAAAATTCCAAAACGTAGATAGGTCAATCTTTCTAAATGTATACATTGAATCTCCTTGGCTTCTTCATCTTTTTTTGAATATATATTTTGAATCTCCTTAGCAAAAATCCAGTTATTTTAGTTCTGCCACTGTTTAGCACTACTTTGGGTTATTTGAATAAGCCTTTCGGTCTAAGTAATAATTACTCATCTACAAAAATTGGAAGTGGTCTTTTGTTTAAGCACTGGTGTTGAAATCTCTTGGTATGTACTGAATAGCAACCAATAACTTTGGTCTTCATACAGATTATTGCTTCTTTTTTTTTTTTTTTAATGAAAACGACCTCAAAGAGGCAATTGATATTTGCAGTGGTCTCCTTACAGCTATCCCCTTGTTAGAAAATGATCCATTGAATCTCATGTTGAGATACACATTTAGAAGAAAAAAATATAATATCATCTGAGATTTGGATATGCAAGTAATTTGATAATCAACTAGCTTTTTAGTTTTCTAAAATGATAGTAATATACTAGATCAATTTCTTCTTAGAATGAATACATTATATATTATCTCGCATGCCTAGAAGTTCGACAATGGTGTTTTATACTGAAAACTGAGGTGTTAACTCCCGAAGGTTGAGATCTGATGTACTTGCAGTGATGGTACAATAACAAGGGATCAATGGAGGTGGTAGTGATTTCCAGGGAAAAAATATAATCACGGTGGTTGCTTCTTCTTTGTTGGTCGTATGGAATCTGTGTTCACTTTTCAGTCTTCAGTCATCTGTTGCTGACTCTTAAGAGTAGCATGCACAATGTTGATGACTGTTGGACTTATTAAAGGAATGAGTTTTGTCAACTAGGAGATACTCCCTCCTTTTCAATTTGTTTGTCTGGTTTTGACTTGGTACAAAGGTAAGAAAGTGACGAGACTTTTGAATCTTGTGGTGTTAAACATGTCGTGTGGAGTTGCAAAAAAGGGAACGAGGCATTTTTTTTTGAAACGGACTAAAAAGGAAAGTAAGACAAACAAGTTGAATCGGAGGGAGTAGTAATTACTAAGAACGAGCTCTGATATGCTTTGCAGCTTCTAGGTCACTCACATAAGAATTATCAAGTAGTTGCTTTGTGTGTGGTTTTTATGAAAATTGTAGTGCTTGGCGATATATTGGTGATTCTTCAAGTTAAATTTAGGTGCTTTCAACGGGAGCTAATCCAAGGTATTTCTTGATCTTTTTTCTCTTGCAGCATGACTGTCATTTTCTTTGCAAAA</genome_strand>
        <mrna_strand>GTTTGATTTTTTTTGGTTAAAAATGGGTAATATGGGAAGTAGTGGTGTGAACGGCCGGCGACGGAGTAGTAGCCGGAGGAGCCACCCACCGCCGTCTCCACAACCACAACCACCGCAGCCGGAGATAAACGCGAACAGGTATGTGTTTGCGGCGGCGACGCCTTATCCTACTCAATACCCAAACCCTAATGCTCCGCCGTATTATCAATACCCGGGTTACTATCCTCCACCGCCGGCGGCGATGCCGGTGCCGTTACCAGCTTCGTATGATCATCACCATAGGATGGACCCTGGTCATGCTAATTGGGTTAACGGGCGGTACCCGTGTGGACCGATGATGCCTCCACCAGCTCCGTATGTGGAGCATCAAAAAGCTGTAACAATAAGGAATGATGTTAACTTGAAGAAGGAGACTCTAAGGATTGAGCCTGATGAACCTAATCCTGGCTAGTATGTTGTGGCCTTCACTTTTGATGCCACAGTTCCTGGGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGACTGTCATTTTCTTTGCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E728146" ref_strand="+" ref_description="SGN-E728146 [LA16DD10]">
      <seq>ccacctccgtctccacaaccacaaccaccgcagccggagataaacgcgaacaggtatgtgtttgcggcggcgacgccttatcctactcaatacccaaaccctaatgctccgccgtattatcaatacccgggttactatcctccaccgccggcggcgatgccggtgccgttaccagcttcgtatgatcatcaccataggatggaccctggtcatgctaattgggttaacgggcggtacccgtgtggaccgatgatgcctccaccagctccgtatgtggagcatcaaaaagctgtaacaataaggaatgatgttaacttgaagaaggagactctaaggattgagcctgatgaagctaatcctggcaagtatcttgtggccttcacttttgatgccacagttcctgggagcatgactgtcattttctttgcaaaagaaggtgaagattgttgtttgactcccatgaaggaaagcttgcttccaccagtaacttttgagtttcaaaaaggtttagctcagaaatttaggcaaccgtctggtactggcattgatttttcaatgtttgaagaggcagaattgtccaaagatagtgaggcagatgtgtatccacttgcagtcaaggcggaggcaacattagataacccaagtgaatcagaggatggaagtgcagcatcaggatccactaattcacagatcactcaagcagtttttgagaaggacaaaggtgagtaccatgttagggtggtgaagcagatcctgtgggtcaatgacatgaggtatgaattgccagatatttttggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="+" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="46911" stop="50767"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47211" g_stop="47617" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="407" r_length="407" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47618" i_stop="50075" i_length="2458">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50076" g_stop="50467" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="799" r_length="392" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="+" ref_id="SGN-E728146" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>799</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728146" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47211" e_stop="47617"/>
          <exon e_start="50076" e_stop="50467"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACCGCCGTCTCCACAACCACAACCACCGCAGCCGGAGATAAACGCGAACAGGTATGTGTTTGCGGCGGCGACGCCTTATCCTACTCAATACCCAAACCCTAATGCTCCGCCGTATTATCAATACCCGGGTTACTATCCTCCACCGCCGGCGGCGATGCCGGTGCCGTTACCAGCTTCGTATGATCATCACCATAGGATGGACCCTGGTCATGCTAATTGGGTTAACGGGCGGTACCCGTGTGGACCGATGATGCCTCCACCAGCTCCATATGTGGAGCATCAAAAAGCTGTAACAATAAGGAATGATGTTAACTTGAAGAAGGAGACTCTAAGGATTGAGCCTGATGAAGCTAATCCTGGCAAGTATCTTGTGGCCTTCACTTTTGATGCCACAGTTCCTGGGAGGTAAAAAAAGTGTCTTTTTTTCATTTTACCTGTTTGTTTATTGGTGAAGTTTGTGCAAATTGATGTTAGTATATGGTATTCGCTTGAGTCTTGACTGTTTCAGTTGGAGTGTATTCAAATATGTGCAGTAGTGTTAGTACTTGTTCATTAGCCGAGGTCTATCGGAATTAACCTCTTTATCTACTAGGTATGGTATGGTCTGTGTACCGCAGACTCGCCTTGTGAGATTAAAGTGAGTATGTTGTTGTTTAGTAGTACTTGGCTCATAAAGTTGAAATAAACAAGAGTTTCAACTTTGTACTTTTCCATCTGAATACTTTAATTTGATTGTTTTTTATGGGGTCAGAGTTAAAAACTTCAACTTGACTTTGGTACTGTGTTAGTATTGTGGAATATAAGTTAAACAATGGCTTAATTGGTACCTTTCCCTTGAATTCTTTAGTTTGATGGTTTCTTACAGGGTCAGAGTTAAAAACTTCAACTTGACTTTGGTACTATGTTAGTATTTTGGAAAAAGGTTTGGTTAAATAATGGTTTTGGAAATTATCACCTTTCCAGTAAAGTCCTTAGTTTGATTGTTTCTTGCAGGGACTATAACTTGACTTTAGTATTATGGAAAAATAGTTAAATAATGGAATTGAAAGTCAATTTGATATATCAGACATGATATTATAGTTTATTTTTGAATATGTAAGTGTATTTAAGTTCTTGAAGTATGTGTAGTTGTATTGTATGATAAAATTTTCAATAGAGTGGCGTCCAACATCTTGGAATGTTCCAGCTGGGGTGAGTATGTGTTTAAAATCGGGATGGAGGCAGAGGTACTAGATTTATTTGATCAAGAAAGTTTTGAACTTTTTAGTCTTTTCATTAATTTTGGAAACACATATAGACACTAGTAGGATTATTGCTATTGGGTTTGCTAGGGATTAATTTGTACTTAAGCTTTCTGTGAGACAATCTTTTGACAACCTCCCGTGTCATAAATGCAGATTGAGAAATTGAGAACTTGATCAGCAAATTTTATTTTATCTTGGACATTAATGTAATTTCATTTTGTTGTTACCAGTCCTGCAATCTCTTTAACAACCTTGGATGAGTAGATAAATGTGTCTATTTTAGAGAAAACAAATGAAGTTTCTGCTGCTAACTTTGAGGATCCTGTATAGCGTGACTTAGCACCAGTGGCAGTGTCATCTTTGTTCAAGCGAAGTCAATTGACACTACTTCGTAAAATTCCAAAACGTAGATAGGTCAATCTTTCTAAATGTATACATTGAATCTCCTTGGCTTCTTCATCTTTTTTTGAATATATATTTTGAATCTCCTTAGCAAAAATCCAGTTATTTTAGTTCTGCCACTGTTTAGCACTACTTTGGGTTATTTGAATAAGCCTTTCGGTCTAAGTAATAATTACTCATCTACAAAAATTGGAAGTGGTCTTTTGTTTAAGCACTGGTGTTGAAATCTCTTGGTATGTACTGAATAGCAACCAATAACTTTGGTCTTCATACAGATTATTGCTTCTTTTTTTTTTTTTTTAATGAAAACGACCTCAAAGAGGCAATTGATATTTGCAGTGGTCTCCTTACAGCTATCCCCTTGTTAGAAAATGATCCATTGAATCTCATGTTGAGATACACATTTAGAAGAAAAAAATATAATATCATCTGAGATTTGGATATGCAAGTAATTTGATAATCAACTAGCTTTTTAGTTTTCTAAAATGATAGTAATATACTAGATCAATTTCTTCTTAGAATGAATACATTATATATTATCTCGCATGCCTAGAAGTTCGACAATGGTGTTTTATACTGAAAACTGAGGTGTTAACTCCCGAAGGTTGAGATCTGATGTACTTGCAGTGATGGTACAATAACAAGGGATCAATGGAGGTGGTAGTGATTTCCAGGGAAAAAATATAATCACGGTGGTTGCTTCTTCTTTGTTGGTCGTATGGAATCTGTGTTCACTTTTCAGTCTTCAGTCATCTGTTGCTGACTCTTAAGAGTAGCATGCACAATGTTGATGACTGTTGGACTTATTAAAGGAATGAGTTTTGTCAACTAGGAGATACTCCCTCCTTTTCAATTTGTTTGTCTGGTTTTGACTTGGTACAAAGGTAAGAAAGTGACGAGACTTTTGAATCTTGTGGTGTTAAACATGTCGTGTGGAGTTGCAAAAAAGGGAACGAGGCATTTTTTTTTGAAACGGACTAAAAAGGAAAGTAAGACAAACAAGTTGAATCGGAGGGAGTAGTAATTACTAAGAACGAGCTCTGATATGCTTTGCAGCTTCTAGGTCACTCACATAAGAATTATCAAGTAGTTGCTTTGTGTGTGGTTTTTATGAAAATTGTAGTGCTTGGCGATATATTGGTGATTCTTCAAGTTAAATTTAGGTGCTTTCAACGGGAGCTAATCCAAGGTATTTCTTGATCTTTTTTCTCTTGCAGCATGACTGTCATTTTCTTTGCAAAAGAAGGTGAAGATTGTTGTTTGACTCCCATGAAGGAAAGCTTGCTTCCACCAGTAACTTTTGAGTTTCAAAAAGGTTTAGCTCAGAAATTTAGGCAACCGTCTGGTACTGGCATTGATTTTTCAATGTTTGAAGAGGCAGAATTGTCCAAAGATAGTGAGGCAGATGTGTATCCACTTGCAGTCAAGGCGGAGGCAACATTAGATAACCCAAGTGAATCAGAGGATGGAAGTGCAGCATCAGGATCCACTAATTCACAGATCACTCAAGCAGTTTTTGAGAAGGACAAAGGTGAGTACCATGTTAGGGCGGTGAAGCAGATCCTGTGGGTCAATGACATGAGGTATGAATTGCAAGAGATTTTTGGGA</genome_strand>
        <mrna_strand>CCACCTCCGTCTCCACAACCACAACCACCGCAGCCGGAGATAAACGCGAACAGGTATGTGTTTGCGGCGGCGACGCCTTATCCTACTCAATACCCAAACCCTAATGCTCCGCCGTATTATCAATACCCGGGTTACTATCCTCCACCGCCGGCGGCGATGCCGGTGCCGTTACCAGCTTCGTATGATCATCACCATAGGATGGACCCTGGTCATGCTAATTGGGTTAACGGGCGGTACCCGTGTGGACCGATGATGCCTCCACCAGCTCCGTATGTGGAGCATCAAAAAGCTGTAACAATAAGGAATGATGTTAACTTGAAGAAGGAGACTCTAAGGATTGAGCCTGATGAAGCTAATCCTGGCAAGTATCTTGTGGCCTTCACTTTTGATGCCACAGTTCCTGGGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGACTGTCATTTTCTTTGCAAAAGAAGGTGAAGATTGTTGTTTGACTCCCATGAAGGAAAGCTTGCTTCCACCAGTAACTTTTGAGTTTCAAAAAGGTTTAGCTCAGAAATTTAGGCAACCGTCTGGTACTGGCATTGATTTTTCAATGTTTGAAGAGGCAGAATTGTCCAAAGATAGTGAGGCAGATGTGTATCCACTTGCAGTCAAGGCGGAGGCAACATTAGATAACCCAAGTGAATCAGAGGATGGAAGTGCAGCATCAGGATCCACTAATTCACAGATCACTCAAGCAGTTTTTGAGAAGGACAAAGGTGAGTACCATGTTAGGGTGGTGAAGCAGATCCTGTGGGTCAATGACATGAGGTATGAATTGCCAGATATTTTTGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E698053" ref_strand="+" ref_description="SGN-E698053 [FA05AD12]">
      <seq>tatgatcatcaccataggatggaccctggtcatgctaattgggttaacgggcggtacccgtgtggaccgatgatgcctccaccagctccatatgtggagcatcaaaaagctgtaacaataaggaatgatgttaacttgaagaaggagactctaaggattgagcctgatgaagctaatcctggcaagtatcttgtggccttcacttttgatgccacagttcctgggagcatgactgtcattttctttgcaaaagaaggtgaagattgttgtttgactcccatgaaggaaagcttgcttccaccagtaacttttgagtttcaaaaaggtttagctcagaaatttaggcaaccgtctggtactggcattgatttttcaatgtttgaagaggcagaattgtccaaagatagtgaggcagatgtgtatccacttgcagtcaaggcggaggcaacattagataacccaagtgaatcagaggatggaagtgcagcatcaggatccactaattcacagatcactcaagcagtttttgagaaggacaaaggtgagtaccatgttagggtggtgaagcagatcctgtgggtcaatgacatgaggtatgaattgcaagagatttttgggattggtaattcagttgaaagtgacttcgatggaaatgatcccggaaaagaatgtgtgatttgcctctctgaacctcgggataccactgtacttccatttcggcacatgtgtatgtgtagcggatgtgcaaaggttttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="+" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="47091" stop="51855"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47391" g_stop="47617" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47618" i_stop="50075" i_length="2458">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50076" g_stop="50574" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="726" r_length="499" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50575" i_stop="51524" i_length="950">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.970" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51525" g_stop="51555" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="727" r_stop="757" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="+" ref_id="SGN-E698053" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698053" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47391" e_stop="47617"/>
          <exon e_start="50076" e_stop="50574"/>
          <exon e_start="51525" e_stop="51555"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGATCATCACCATAGGATGGACCCTGGTCATGCTAATTGGGTTAACGGGCGGTACCCGTGTGGACCGATGATGCCTCCACCAGCTCCATATGTGGAGCATCAAAAAGCTGTAACAATAAGGAATGATGTTAACTTGAAGAAGGAGACTCTAAGGATTGAGCCTGATGAAGCTAATCCTGGCAAGTATCTTGTGGCCTTCACTTTTGATGCCACAGTTCCTGGGAGGTAAAAAAAGTGTCTTTTTTTCATTTTACCTGTTTGTTTATTGGTGAAGTTTGTGCAAATTGATGTTAGTATATGGTATTCGCTTGAGTCTTGACTGTTTCAGTTGGAGTGTATTCAAATATGTGCAGTAGTGTTAGTACTTGTTCATTAGCCGAGGTCTATCGGAATTAACCTCTTTATCTACTAGGTATGGTATGGTCTGTGTACCGCAGACTCGCCTTGTGAGATTAAAGTGAGTATGTTGTTGTTTAGTAGTACTTGGCTCATAAAGTTGAAATAAACAAGAGTTTCAACTTTGTACTTTTCCATCTGAATACTTTAATTTGATTGTTTTTTATGGGGTCAGAGTTAAAAACTTCAACTTGACTTTGGTACTGTGTTAGTATTGTGGAATATAAGTTAAACAATGGCTTAATTGGTACCTTTCCCTTGAATTCTTTAGTTTGATGGTTTCTTACAGGGTCAGAGTTAAAAACTTCAACTTGACTTTGGTACTATGTTAGTATTTTGGAAAAAGGTTTGGTTAAATAATGGTTTTGGAAATTATCACCTTTCCAGTAAAGTCCTTAGTTTGATTGTTTCTTGCAGGGACTATAACTTGACTTTAGTATTATGGAAAAATAGTTAAATAATGGAATTGAAAGTCAATTTGATATATCAGACATGATATTATAGTTTATTTTTGAATATGTAAGTGTATTTAAGTTCTTGAAGTATGTGTAGTTGTATTGTATGATAAAATTTTCAATAGAGTGGCGTCCAACATCTTGGAATGTTCCAGCTGGGGTGAGTATGTGTTTAAAATCGGGATGGAGGCAGAGGTACTAGATTTATTTGATCAAGAAAGTTTTGAACTTTTTAGTCTTTTCATTAATTTTGGAAACACATATAGACACTAGTAGGATTATTGCTATTGGGTTTGCTAGGGATTAATTTGTACTTAAGCTTTCTGTGAGACAATCTTTTGACAACCTCCCGTGTCATAAATGCAGATTGAGAAATTGAGAACTTGATCAGCAAATTTTATTTTATCTTGGACATTAATGTAATTTCATTTTGTTGTTACCAGTCCTGCAATCTCTTTAACAACCTTGGATGAGTAGATAAATGTGTCTATTTTAGAGAAAACAAATGAAGTTTCTGCTGCTAACTTTGAGGATCCTGTATAGCGTGACTTAGCACCAGTGGCAGTGTCATCTTTGTTCAAGCGAAGTCAATTGACACTACTTCGTAAAATTCCAAAACGTAGATAGGTCAATCTTTCTAAATGTATACATTGAATCTCCTTGGCTTCTTCATCTTTTTTTGAATATATATTTTGAATCTCCTTAGCAAAAATCCAGTTATTTTAGTTCTGCCACTGTTTAGCACTACTTTGGGTTATTTGAATAAGCCTTTCGGTCTAAGTAATAATTACTCATCTACAAAAATTGGAAGTGGTCTTTTGTTTAAGCACTGGTGTTGAAATCTCTTGGTATGTACTGAATAGCAACCAATAACTTTGGTCTTCATACAGATTATTGCTTCTTTTTTTTTTTTTTTAATGAAAACGACCTCAAAGAGGCAATTGATATTTGCAGTGGTCTCCTTACAGCTATCCCCTTGTTAGAAAATGATCCATTGAATCTCATGTTGAGATACACATTTAGAAGAAAAAAATATAATATCATCTGAGATTTGGATATGCAAGTAATTTGATAATCAACTAGCTTTTTAGTTTTCTAAAATGATAGTAATATACTAGATCAATTTCTTCTTAGAATGAATACATTATATATTATCTCGCATGCCTAGAAGTTCGACAATGGTGTTTTATACTGAAAACTGAGGTGTTAACTCCCGAAGGTTGAGATCTGATGTACTTGCAGTGATGGTACAATAACAAGGGATCAATGGAGGTGGTAGTGATTTCCAGGGAAAAAATATAATCACGGTGGTTGCTTCTTCTTTGTTGGTCGTATGGAATCTGTGTTCACTTTTCAGTCTTCAGTCATCTGTTGCTGACTCTTAAGAGTAGCATGCACAATGTTGATGACTGTTGGACTTATTAAAGGAATGAGTTTTGTCAACTAGGAGATACTCCCTCCTTTTCAATTTGTTTGTCTGGTTTTGACTTGGTACAAAGGTAAGAAAGTGACGAGACTTTTGAATCTTGTGGTGTTAAACATGTCGTGTGGAGTTGCAAAAAAGGGAACGAGGCATTTTTTTTTGAAACGGACTAAAAAGGAAAGTAAGACAAACAAGTTGAATCGGAGGGAGTAGTAATTACTAAGAACGAGCTCTGATATGCTTTGCAGCTTCTAGGTCACTCACATAAGAATTATCAAGTAGTTGCTTTGTGTGTGGTTTTTATGAAAATTGTAGTGCTTGGCGATATATTGGTGATTCTTCAAGTTAAATTTAGGTGCTTTCAACGGGAGCTAATCCAAGGTATTTCTTGATCTTTTTTCTCTTGCAGCATGACTGTCATTTTCTTTGCAAAAGAAGGTGAAGATTGTTGTTTGACTCCCATGAAGGAAAGCTTGCTTCCACCAGTAACTTTTGAGTTTCAAAAAGGTTTAGCTCAGAAATTTAGGCAACCGTCTGGTACTGGCATTGATTTTTCAATGTTTGAAGAGGCAGAATTGTCCAAAGATAGTGAGGCAGATGTGTATCCACTTGCAGTCAAGGCGGAGGCAACATTAGATAACCCAAGTGAATCAGAGGATGGAAGTGCAGCATCAGGATCCACTAATTCACAGATCACTCAAGCAGTTTTTGAGAAGGACAAAGGTGAGTACCATGTTAGGGCGGTGAAGCAGATCCTGTGGGTCAATGACATGAGGTATGAATTGCAAGAGATTTTTGGGATTGGTAATTCAGTTGAAAGTGACTTCGATGGAAATGATCCCGGAAAAGAATGTGTGATTTGCCTCTCTGAACCTCGGGATACCACTGTACTTCCATGTCGGCACATGGTATGATTCTGCCCTTTGTTAACAATTTATGTCGAGTTTTGGTCTCAATATGTTCCCAAACGTCTGCAATGTCATGATTATACGTAGTACAGAATTTATGCATTCTGCAGTTCAACAGTTTTGCTTATAGAATCTGAAAACAATTCCTTCCGACACTTCAAGTCTTCCTAGGGTGTGTTTGGTATGGAGGAAAAAATGTTTTCCAGTTTTTAAATGTTCAGTTGGTTAAAATTTTGAAAAAAAATTTCTCTAGGAAAACAAGTATTTTTTAAAATGAAGAAAATGACTTCCCTAGAGAAAGAAGGGGAAAGATGTTCCACAGGTGGTGTCCTTGCCACCCTCTAACATACATCATCTTCACCCACACCCCCTGTAGCCTCTATCCCCGCCACCCCACGCCCTTACCTCTACTCCTATCTTCCATTATATTGGTTCAGGTGATATACAAATGCTTTAAGGATAATATTTTCTGCTTATTTTCCTGGGAAACATTTTCCTTCCTACCGACCACACCCTTAAAGTCCACTGTTTTCCCTCTTCTTTGCTGTGTGACCTCTCCTTAGCACACCTCACACTTTCTCTTGCCACTGGCTGAGTGATTTAAGATTTTAGTAAAATTGATATTCTGAAGCAGACTTCGTTTTAAGCTTCATTTTCACTGCAGACATTTATTGATTGAACAAGCCATTTATAAAATACCTGTTTCTGGATTAGGACGTGTCTCTCTCTATTGGGCGGAGATCCGAAAGGAGCTACCACATCTTACCTTGAATTAAAATACTTCTGCTCAACTTCCCATCGAGGAAGCACCAACCCGTTTTTCACCTTGAATTGATCAAACCATGCTGAATTTCTTATGTTTCGCGGAGGGATTAGACCCTGCATTTCTTTTAGTTGACAAAACTCTAATATAATGTACATTACATAACTCAGTGTCTTTCTTCACGCAGTGTATGTGTAGCGGATGTGCAAAGGTTTTGA</genome_strand>
        <mrna_strand>TATGATCATCACCATAGGATGGACCCTGGTCATGCTAATTGGGTTAACGGGCGGTACCCGTGTGGACCGATGATGCCTCCACCAGCTCCATATGTGGAGCATCAAAAAGCTGTAACAATAAGGAATGATGTTAACTTGAAGAAGGAGACTCTAAGGATTGAGCCTGATGAAGCTAATCCTGGCAAGTATCTTGTGGCCTTCACTTTTGATGCCACAGTTCCTGGGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGACTGTCATTTTCTTTGCAAAAGAAGGTGAAGATTGTTGTTTGACTCCCATGAAGGAAAGCTTGCTTCCACCAGTAACTTTTGAGTTTCAAAAAGGTTTAGCTCAGAAATTTAGGCAACCGTCTGGTACTGGCATTGATTTTTCAATGTTTGAAGAGGCAGAATTGTCCAAAGATAGTGAGGCAGATGTGTATCCACTTGCAGTCAAGGCGGAGGCAACATTAGATAACCCAAGTGAATCAGAGGATGGAAGTGCAGCATCAGGATCCACTAATTCACAGATCACTCAAGCAGTTTTTGAGAAGGACAAAGGTGAGTACCATGTTAGGGTGGTGAAGCAGATCCTGTGGGTCAATGACATGAGGTATGAATTGCAAGAGATTTTTGGGATTGGTAATTCAGTTGAAAGTGACTTCGATGGAAATGATCCCGGAAAAGAATGTGTGATTTGCCTCTCTGAACCTCGGGATACCACTGTACTTCCATTTCGGCACATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATGTGTAGCGGATGTGCAAAGGTTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E710409" ref_strand="+" ref_description="SGN-E710409 [FA55BD04]">
      <seq>ccctggtcatgctaattgggttaacgggcggtacccgtgtggaccgatgatgcctccaccagctccgtatgtggagcatcaaaaagctgtaacaataaggaatgatgttaacttgaagaaggagactctaaggattgagcctgatgaagctaatcctggcaagtatcttgtggccttcacttttgatgccacagttcctgggagcatgactgtcattttctttgcaaaagaaggtgaagattgttgtttgactcccatgaaggaaagcttgcttccaccagtaacttttgagtttcaaaaaggtttagctcagaaatttaggcaaccgtctggtactggcattgatttttcaatgtttgaagaggcagaattgtccaaagatagtgaggcagatgtgtatccacttgcagtcaaggcggaggcaacattagataacccaagtgaatcagaggatggaagtgcagcatcaggatccactaattcacagatcactcaagcagtttttgagaaggacaaaggtgagtaccatgttagggtggtgaagcagatcctgtgggtcaatgacatgaggtatgaattgcaacagatttttgggattggtaattccacttgaaagtgacttcgatggacatgatcccggaaaagaatgtgtgatttgcctctctgaacctcggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="+" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="47114" stop="50845"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47414" g_stop="47617" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47618" i_stop="50075" i_length="2458">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50076" g_stop="50545" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="675" r_length="471" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="+" ref_id="SGN-E710409" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710409" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47414" e_stop="47617"/>
          <exon e_start="50076" e_stop="50545"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTGGTCATGCTAATTGGGTTAACGGGCGGTACCCGTGTGGACCGATGATGCCTCCACCAGCTCCATATGTGGAGCATCAAAAAGCTGTAACAATAAGGAATGATGTTAACTTGAAGAAGGAGACTCTAAGGATTGAGCCTGATGAAGCTAATCCTGGCAAGTATCTTGTGGCCTTCACTTTTGATGCCACAGTTCCTGGGAGGTAAAAAAAGTGTCTTTTTTTCATTTTACCTGTTTGTTTATTGGTGAAGTTTGTGCAAATTGATGTTAGTATATGGTATTCGCTTGAGTCTTGACTGTTTCAGTTGGAGTGTATTCAAATATGTGCAGTAGTGTTAGTACTTGTTCATTAGCCGAGGTCTATCGGAATTAACCTCTTTATCTACTAGGTATGGTATGGTCTGTGTACCGCAGACTCGCCTTGTGAGATTAAAGTGAGTATGTTGTTGTTTAGTAGTACTTGGCTCATAAAGTTGAAATAAACAAGAGTTTCAACTTTGTACTTTTCCATCTGAATACTTTAATTTGATTGTTTTTTATGGGGTCAGAGTTAAAAACTTCAACTTGACTTTGGTACTGTGTTAGTATTGTGGAATATAAGTTAAACAATGGCTTAATTGGTACCTTTCCCTTGAATTCTTTAGTTTGATGGTTTCTTACAGGGTCAGAGTTAAAAACTTCAACTTGACTTTGGTACTATGTTAGTATTTTGGAAAAAGGTTTGGTTAAATAATGGTTTTGGAAATTATCACCTTTCCAGTAAAGTCCTTAGTTTGATTGTTTCTTGCAGGGACTATAACTTGACTTTAGTATTATGGAAAAATAGTTAAATAATGGAATTGAAAGTCAATTTGATATATCAGACATGATATTATAGTTTATTTTTGAATATGTAAGTGTATTTAAGTTCTTGAAGTATGTGTAGTTGTATTGTATGATAAAATTTTCAATAGAGTGGCGTCCAACATCTTGGAATGTTCCAGCTGGGGTGAGTATGTGTTTAAAATCGGGATGGAGGCAGAGGTACTAGATTTATTTGATCAAGAAAGTTTTGAACTTTTTAGTCTTTTCATTAATTTTGGAAACACATATAGACACTAGTAGGATTATTGCTATTGGGTTTGCTAGGGATTAATTTGTACTTAAGCTTTCTGTGAGACAATCTTTTGACAACCTCCCGTGTCATAAATGCAGATTGAGAAATTGAGAACTTGATCAGCAAATTTTATTTTATCTTGGACATTAATGTAATTTCATTTTGTTGTTACCAGTCCTGCAATCTCTTTAACAACCTTGGATGAGTAGATAAATGTGTCTATTTTAGAGAAAACAAATGAAGTTTCTGCTGCTAACTTTGAGGATCCTGTATAGCGTGACTTAGCACCAGTGGCAGTGTCATCTTTGTTCAAGCGAAGTCAATTGACACTACTTCGTAAAATTCCAAAACGTAGATAGGTCAATCTTTCTAAATGTATACATTGAATCTCCTTGGCTTCTTCATCTTTTTTTGAATATATATTTTGAATCTCCTTAGCAAAAATCCAGTTATTTTAGTTCTGCCACTGTTTAGCACTACTTTGGGTTATTTGAATAAGCCTTTCGGTCTAAGTAATAATTACTCATCTACAAAAATTGGAAGTGGTCTTTTGTTTAAGCACTGGTGTTGAAATCTCTTGGTATGTACTGAATAGCAACCAATAACTTTGGTCTTCATACAGATTATTGCTTCTTTTTTTTTTTTTTTAATGAAAACGACCTCAAAGAGGCAATTGATATTTGCAGTGGTCTCCTTACAGCTATCCCCTTGTTAGAAAATGATCCATTGAATCTCATGTTGAGATACACATTTAGAAGAAAAAAATATAATATCATCTGAGATTTGGATATGCAAGTAATTTGATAATCAACTAGCTTTTTAGTTTTCTAAAATGATAGTAATATACTAGATCAATTTCTTCTTAGAATGAATACATTATATATTATCTCGCATGCCTAGAAGTTCGACAATGGTGTTTTATACTGAAAACTGAGGTGTTAACTCCCGAAGGTTGAGATCTGATGTACTTGCAGTGATGGTACAATAACAAGGGATCAATGGAGGTGGTAGTGATTTCCAGGGAAAAAATATAATCACGGTGGTTGCTTCTTCTTTGTTGGTCGTATGGAATCTGTGTTCACTTTTCAGTCTTCAGTCATCTGTTGCTGACTCTTAAGAGTAGCATGCACAATGTTGATGACTGTTGGACTTATTAAAGGAATGAGTTTTGTCAACTAGGAGATACTCCCTCCTTTTCAATTTGTTTGTCTGGTTTTGACTTGGTACAAAGGTAAGAAAGTGACGAGACTTTTGAATCTTGTGGTGTTAAACATGTCGTGTGGAGTTGCAAAAAAGGGAACGAGGCATTTTTTTTTGAAACGGACTAAAAAGGAAAGTAAGACAAACAAGTTGAATCGGAGGGAGTAGTAATTACTAAGAACGAGCTCTGATATGCTTTGCAGCTTCTAGGTCACTCACATAAGAATTATCAAGTAGTTGCTTTGTGTGTGGTTTTTATGAAAATTGTAGTGCTTGGCGATATATTGGTGATTCTTCAAGTTAAATTTAGGTGCTTTCAACGGGAGCTAATCCAAGGTATTTCTTGATCTTTTTTCTCTTGCAGCATGACTGTCATTTTCTTTGCAAAAGAAGGTGAAGATTGTTGTTTGACTCCCATGAAGGAAAGCTTGCTTCCACCAGTAACTTTTGAGTTTCAAAAAGGTTTAGCTCAGAAATTTAGGCAACCGTCTGGTACTGGCATTGATTTTTCAATGTTTGAAGAGGCAGAATTGTCCAAAGATAGTGAGGCAGATGTGTATCCACTTGCAGTCAAGGCGGAGGCAACATTAGATAACCCAAGTGAATCAGAGGATGGAAGTGCAGCATCAGGATCCACTAATTCACAGATCACTCAAGCAGTTTTTGAGAAGGACAAAGGTGAGTACCATGTTAGGGCGGTGAAGCAGATCCTGTGGGTCAATGACATGAGGTATGAATTGCAAGAGATTTTTGGGATTGGTAATT-CAGTTGAAAGTGACTTCGATGGAAATGATCCCGGAAAAGAATGTGTGATTTGCCTCTCTGAACCTCGGG</genome_strand>
        <mrna_strand>CCCTGGTCATGCTAATTGGGTTAACGGGCGGTACCCGTGTGGACCGATGATGCCTCCACCAGCTCCGTATGTGGAGCATCAAAAAGCTGTAACAATAAGGAATGATGTTAACTTGAAGAAGGAGACTCTAAGGATTGAGCCTGATGAAGCTAATCCTGGCAAGTATCTTGTGGCCTTCACTTTTGATGCCACAGTTCCTGGGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGACTGTCATTTTCTTTGCAAAAGAAGGTGAAGATTGTTGTTTGACTCCCATGAAGGAAAGCTTGCTTCCACCAGTAACTTTTGAGTTTCAAAAAGGTTTAGCTCAGAAATTTAGGCAACCGTCTGGTACTGGCATTGATTTTTCAATGTTTGAAGAGGCAGAATTGTCCAAAGATAGTGAGGCAGATGTGTATCCACTTGCAGTCAAGGCGGAGGCAACATTAGATAACCCAAGTGAATCAGAGGATGGAAGTGCAGCATCAGGATCCACTAATTCACAGATCACTCAAGCAGTTTTTGAGAAGGACAAAGGTGAGTACCATGTTAGGGTGGTGAAGCAGATCCTGTGGGTCAATGACATGAGGTATGAATTGCAACAGATTTTTGGGATTGGTAATTCCACTTGAAAGTGACTTCGATGGACATGATCCCGGAAAAGAATGTGTGATTTGCCTCTCTGAACCTCGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E703324" ref_strand="+" ref_description="SGN-E703324 [FA21AG06]">
      <seq>ggcggtacccgtgtggaccgatgatgcctccaccagctccgtatgtggagcatcaaaaagctgtaacaataaggaatgatgttaacttgaagaaggagactctaaggattgagcctgatgaagctaatcctggcaagtatcttgtggccttcacttttgatgccacagttcctgggagcatgactgtcattttctttgcaaaagaaggtgaagattgttgtttgactcccatgaaggaaagcttgcttccaccagtaacttttgagtttcaaaaaggtttagctcagaaatttaggcaaccgtctggtactggcattgatttttcaatgtttgaagaggcagaattgtccaaagatagtgaggcagatgtgtatccacttgcagtcaaggcggaggcaacattagataacccaagtgaatcagaggatggaagtgcagcatcaggatccactaattcacagatcactcaagcagtttttgagaaggacaaaggtgagtaccatgttagggtggtgaagcagatcctgtgggtcaatgacatgaggtatgaattgcaagagatttttgggattggtaattcagttgaaagtgacttcgatggaaatgatcccggaaaagaatgtgtgatttgcctctctgaacctcgggataccactgtacttccatgtcggcacatgtgtatgtgtagcggatgtgcaaaggttttgaggttccagacgaatcgctgtcccatctgtcgacagccagttgaacgcctcctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="+" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="47140" stop="51909"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47440" g_stop="47617" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47618" i_stop="50075" i_length="2458">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50076" g_stop="50574" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="677" r_length="499" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50575" i_stop="51524" i_length="950">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51525" g_stop="51609" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="678" r_stop="762" r_length="85" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="+" ref_id="SGN-E703324" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703324" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47440" e_stop="47617"/>
          <exon e_start="50076" e_stop="50574"/>
          <exon e_start="51525" e_stop="51609"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGGTACCCGTGTGGACCGATGATGCCTCCACCAGCTCCATATGTGGAGCATCAAAAAGCTGTAACAATAAGGAATGATGTTAACTTGAAGAAGGAGACTCTAAGGATTGAGCCTGATGAAGCTAATCCTGGCAAGTATCTTGTGGCCTTCACTTTTGATGCCACAGTTCCTGGGAGGTAAAAAAAGTGTCTTTTTTTCATTTTACCTGTTTGTTTATTGGTGAAGTTTGTGCAAATTGATGTTAGTATATGGTATTCGCTTGAGTCTTGACTGTTTCAGTTGGAGTGTATTCAAATATGTGCAGTAGTGTTAGTACTTGTTCATTAGCCGAGGTCTATCGGAATTAACCTCTTTATCTACTAGGTATGGTATGGTCTGTGTACCGCAGACTCGCCTTGTGAGATTAAAGTGAGTATGTTGTTGTTTAGTAGTACTTGGCTCATAAAGTTGAAATAAACAAGAGTTTCAACTTTGTACTTTTCCATCTGAATACTTTAATTTGATTGTTTTTTATGGGGTCAGAGTTAAAAACTTCAACTTGACTTTGGTACTGTGTTAGTATTGTGGAATATAAGTTAAACAATGGCTTAATTGGTACCTTTCCCTTGAATTCTTTAGTTTGATGGTTTCTTACAGGGTCAGAGTTAAAAACTTCAACTTGACTTTGGTACTATGTTAGTATTTTGGAAAAAGGTTTGGTTAAATAATGGTTTTGGAAATTATCACCTTTCCAGTAAAGTCCTTAGTTTGATTGTTTCTTGCAGGGACTATAACTTGACTTTAGTATTATGGAAAAATAGTTAAATAATGGAATTGAAAGTCAATTTGATATATCAGACATGATATTATAGTTTATTTTTGAATATGTAAGTGTATTTAAGTTCTTGAAGTATGTGTAGTTGTATTGTATGATAAAATTTTCAATAGAGTGGCGTCCAACATCTTGGAATGTTCCAGCTGGGGTGAGTATGTGTTTAAAATCGGGATGGAGGCAGAGGTACTAGATTTATTTGATCAAGAAAGTTTTGAACTTTTTAGTCTTTTCATTAATTTTGGAAACACATATAGACACTAGTAGGATTATTGCTATTGGGTTTGCTAGGGATTAATTTGTACTTAAGCTTTCTGTGAGACAATCTTTTGACAACCTCCCGTGTCATAAATGCAGATTGAGAAATTGAGAACTTGATCAGCAAATTTTATTTTATCTTGGACATTAATGTAATTTCATTTTGTTGTTACCAGTCCTGCAATCTCTTTAACAACCTTGGATGAGTAGATAAATGTGTCTATTTTAGAGAAAACAAATGAAGTTTCTGCTGCTAACTTTGAGGATCCTGTATAGCGTGACTTAGCACCAGTGGCAGTGTCATCTTTGTTCAAGCGAAGTCAATTGACACTACTTCGTAAAATTCCAAAACGTAGATAGGTCAATCTTTCTAAATGTATACATTGAATCTCCTTGGCTTCTTCATCTTTTTTTGAATATATATTTTGAATCTCCTTAGCAAAAATCCAGTTATTTTAGTTCTGCCACTGTTTAGCACTACTTTGGGTTATTTGAATAAGCCTTTCGGTCTAAGTAATAATTACTCATCTACAAAAATTGGAAGTGGTCTTTTGTTTAAGCACTGGTGTTGAAATCTCTTGGTATGTACTGAATAGCAACCAATAACTTTGGTCTTCATACAGATTATTGCTTCTTTTTTTTTTTTTTTAATGAAAACGACCTCAAAGAGGCAATTGATATTTGCAGTGGTCTCCTTACAGCTATCCCCTTGTTAGAAAATGATCCATTGAATCTCATGTTGAGATACACATTTAGAAGAAAAAAATATAATATCATCTGAGATTTGGATATGCAAGTAATTTGATAATCAACTAGCTTTTTAGTTTTCTAAAATGATAGTAATATACTAGATCAATTTCTTCTTAGAATGAATACATTATATATTATCTCGCATGCCTAGAAGTTCGACAATGGTGTTTTATACTGAAAACTGAGGTGTTAACTCCCGAAGGTTGAGATCTGATGTACTTGCAGTGATGGTACAATAACAAGGGATCAATGGAGGTGGTAGTGATTTCCAGGGAAAAAATATAATCACGGTGGTTGCTTCTTCTTTGTTGGTCGTATGGAATCTGTGTTCACTTTTCAGTCTTCAGTCATCTGTTGCTGACTCTTAAGAGTAGCATGCACAATGTTGATGACTGTTGGACTTATTAAAGGAATGAGTTTTGTCAACTAGGAGATACTCCCTCCTTTTCAATTTGTTTGTCTGGTTTTGACTTGGTACAAAGGTAAGAAAGTGACGAGACTTTTGAATCTTGTGGTGTTAAACATGTCGTGTGGAGTTGCAAAAAAGGGAACGAGGCATTTTTTTTTGAAACGGACTAAAAAGGAAAGTAAGACAAACAAGTTGAATCGGAGGGAGTAGTAATTACTAAGAACGAGCTCTGATATGCTTTGCAGCTTCTAGGTCACTCACATAAGAATTATCAAGTAGTTGCTTTGTGTGTGGTTTTTATGAAAATTGTAGTGCTTGGCGATATATTGGTGATTCTTCAAGTTAAATTTAGGTGCTTTCAACGGGAGCTAATCCAAGGTATTTCTTGATCTTTTTTCTCTTGCAGCATGACTGTCATTTTCTTTGCAAAAGAAGGTGAAGATTGTTGTTTGACTCCCATGAAGGAAAGCTTGCTTCCACCAGTAACTTTTGAGTTTCAAAAAGGTTTAGCTCAGAAATTTAGGCAACCGTCTGGTACTGGCATTGATTTTTCAATGTTTGAAGAGGCAGAATTGTCCAAAGATAGTGAGGCAGATGTGTATCCACTTGCAGTCAAGGCGGAGGCAACATTAGATAACCCAAGTGAATCAGAGGATGGAAGTGCAGCATCAGGATCCACTAATTCACAGATCACTCAAGCAGTTTTTGAGAAGGACAAAGGTGAGTACCATGTTAGGGCGGTGAAGCAGATCCTGTGGGTCAATGACATGAGGTATGAATTGCAAGAGATTTTTGGGATTGGTAATTCAGTTGAAAGTGACTTCGATGGAAATGATCCCGGAAAAGAATGTGTGATTTGCCTCTCTGAACCTCGGGATACCACTGTACTTCCATGTCGGCACATGGTATGATTCTGCCCTTTGTTAACAATTTATGTCGAGTTTTGGTCTCAATATGTTCCCAAACGTCTGCAATGTCATGATTATACGTAGTACAGAATTTATGCATTCTGCAGTTCAACAGTTTTGCTTATAGAATCTGAAAACAATTCCTTCCGACACTTCAAGTCTTCCTAGGGTGTGTTTGGTATGGAGGAAAAAATGTTTTCCAGTTTTTAAATGTTCAGTTGGTTAAAATTTTGAAAAAAAATTTCTCTAGGAAAACAAGTATTTTTTAAAATGAAGAAAATGACTTCCCTAGAGAAAGAAGGGGAAAGATGTTCCACAGGTGGTGTCCTTGCCACCCTCTAACATACATCATCTTCACCCACACCCCCTGTAGCCTCTATCCCCGCCACCCCACGCCCTTACCTCTACTCCTATCTTCCATTATATTGGTTCAGGTGATATACAAATGCTTTAAGGATAATATTTTCTGCTTATTTTCCTGGGAAACATTTTCCTTCCTACCGACCACACCCTTAAAGTCCACTGTTTTCCCTCTTCTTTGCTGTGTGACCTCTCCTTAGCACACCTCACACTTTCTCTTGCCACTGGCTGAGTGATTTAAGATTTTAGTAAAATTGATATTCTGAAGCAGACTTCGTTTTAAGCTTCATTTTCACTGCAGACATTTATTGATTGAACAAGCCATTTATAAAATACCTGTTTCTGGATTAGGACGTGTCTCTCTCTATTGGGCGGAGATCCGAAAGGAGCTACCACATCTTACCTTGAATTAAAATACTTCTGCTCAACTTCCCATCGAGGAAGCACCAACCCGTTTTTCACCTTGAATTGATCAAACCATGCTGAATTTCTTATGTTTCGCGGAGGGATTAGACCCTGCATTTCTTTTAGTTGACAAAACTCTAATATAATGTACATTACATAACTCAGTGTCTTTCTTCACGCAGTGTATGTGTAGCGGATGTGCAAAGGTTTTGAGGTTCCAGACGAATCGCTGTCCCATCTGTCGACAGCCAGTTGAACGCCTCCTGG</genome_strand>
        <mrna_strand>GGCGGTACCCGTGTGGACCGATGATGCCTCCACCAGCTCCGTATGTGGAGCATCAAAAAGCTGTAACAATAAGGAATGATGTTAACTTGAAGAAGGAGACTCTAAGGATTGAGCCTGATGAAGCTAATCCTGGCAAGTATCTTGTGGCCTTCACTTTTGATGCCACAGTTCCTGGGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGACTGTCATTTTCTTTGCAAAAGAAGGTGAAGATTGTTGTTTGACTCCCATGAAGGAAAGCTTGCTTCCACCAGTAACTTTTGAGTTTCAAAAAGGTTTAGCTCAGAAATTTAGGCAACCGTCTGGTACTGGCATTGATTTTTCAATGTTTGAAGAGGCAGAATTGTCCAAAGATAGTGAGGCAGATGTGTATCCACTTGCAGTCAAGGCGGAGGCAACATTAGATAACCCAAGTGAATCAGAGGATGGAAGTGCAGCATCAGGATCCACTAATTCACAGATCACTCAAGCAGTTTTTGAGAAGGACAAAGGTGAGTACCATGTTAGGGTGGTGAAGCAGATCCTGTGGGTCAATGACATGAGGTATGAATTGCAAGAGATTTTTGGGATTGGTAATTCAGTTGAAAGTGACTTCGATGGAAATGATCCCGGAAAAGAATGTGTGATTTGCCTCTCTGAACCTCGGGATACCACTGTACTTCCATGTCGGCACATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATGTGTAGCGGATGTGCAAAGGTTTTGAGGTTCCAGACGAATCGCTGTCCCATCTGTCGACAGCCAGTTGAACGCCTCCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E700573" ref_strand="+" ref_description="SGN-E700573 [FA13CA10]">
      <seq>gttaacttgaagaaggagactctaaggattgagcctgatgaagctaatcctggcaagtatcttgtggccttcacttttgatgccacagttcctgggagcatgactgtcattttctttgcaaaagaaggtgaagattgttgtttgactcccatgaaggaaagcttgcttccaccagtaacttttgagtttcaaaaaggtttagctcagaaatttaggcaaccgtctggtactggcattgatttttcaatgtttgaagaggcagaattgtccaaagatagtgaggcagatgtgtatccacttgcagtcaaggcggaggcaacattagataacccaagtgaatcagaggatggaagtgcagcatcaggatccactaattcacagatcactcaagcagtttttgagaaggacaaaggtgagtaccatgttagggtggtgaagcagatcctgtgggtcaatgacatgaggtatgaattgcaagagatttttgggattggtaattcagttgaaagtgacttcgatggaaatgatcccggaaaagaatgtgtgatttgcctctctgaacctcgggataccactgtacttccatgtcggcacatgtgtatgtgtagcggatgtgcaaaggttttgaggttccagacgaatcgctgtcccatctgtcgacagccagttgaacgcctcctggagatcaaggtcagcgaaggcgcagctgaagagtaaaaataggaagagttgccataatccactcttgtataaatatcagtatttctctttcttgaccttttggttttccttctctatccatccccctagagtaaaataatccaacagctgaaagtctcttagttatagtttgccattgggttgccagtcctacaaatggatcatcgagacatgctgttgagctaaccccccttttttacttttttttttccttttaaaaagtgtttttgaatccaggcatttttttaaaaaattgttaaaactaacccctagaaaatttctgtttgctttgaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="+" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="47220" stop="52208"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47520" g_stop="47617" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47618" i_stop="50075" i_length="2458">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50076" g_stop="50574" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="597" r_length="499" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50575" i_stop="51524" i_length="950">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51525" g_stop="51931" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="598" r_stop="1012" r_length="415" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1013" polyA_stop="1037"/>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="+" ref_id="SGN-E700573" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>1004</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700573" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47520" e_stop="47617"/>
          <exon e_start="50076" e_stop="50574"/>
          <exon e_start="51525" e_stop="51931"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAACTTGAAGAAGGAGACTCTAAGGATTGAGCCTGATGAAGCTAATCCTGGCAAGTATCTTGTGGCCTTCACTTTTGATGCCACAGTTCCTGGGAGGTAAAAAAAGTGTCTTTTTTTCATTTTACCTGTTTGTTTATTGGTGAAGTTTGTGCAAATTGATGTTAGTATATGGTATTCGCTTGAGTCTTGACTGTTTCAGTTGGAGTGTATTCAAATATGTGCAGTAGTGTTAGTACTTGTTCATTAGCCGAGGTCTATCGGAATTAACCTCTTTATCTACTAGGTATGGTATGGTCTGTGTACCGCAGACTCGCCTTGTGAGATTAAAGTGAGTATGTTGTTGTTTAGTAGTACTTGGCTCATAAAGTTGAAATAAACAAGAGTTTCAACTTTGTACTTTTCCATCTGAATACTTTAATTTGATTGTTTTTTATGGGGTCAGAGTTAAAAACTTCAACTTGACTTTGGTACTGTGTTAGTATTGTGGAATATAAGTTAAACAATGGCTTAATTGGTACCTTTCCCTTGAATTCTTTAGTTTGATGGTTTCTTACAGGGTCAGAGTTAAAAACTTCAACTTGACTTTGGTACTATGTTAGTATTTTGGAAAAAGGTTTGGTTAAATAATGGTTTTGGAAATTATCACCTTTCCAGTAAAGTCCTTAGTTTGATTGTTTCTTGCAGGGACTATAACTTGACTTTAGTATTATGGAAAAATAGTTAAATAATGGAATTGAAAGTCAATTTGATATATCAGACATGATATTATAGTTTATTTTTGAATATGTAAGTGTATTTAAGTTCTTGAAGTATGTGTAGTTGTATTGTATGATAAAATTTTCAATAGAGTGGCGTCCAACATCTTGGAATGTTCCAGCTGGGGTGAGTATGTGTTTAAAATCGGGATGGAGGCAGAGGTACTAGATTTATTTGATCAAGAAAGTTTTGAACTTTTTAGTCTTTTCATTAATTTTGGAAACACATATAGACACTAGTAGGATTATTGCTATTGGGTTTGCTAGGGATTAATTTGTACTTAAGCTTTCTGTGAGACAATCTTTTGACAACCTCCCGTGTCATAAATGCAGATTGAGAAATTGAGAACTTGATCAGCAAATTTTATTTTATCTTGGACATTAATGTAATTTCATTTTGTTGTTACCAGTCCTGCAATCTCTTTAACAACCTTGGATGAGTAGATAAATGTGTCTATTTTAGAGAAAACAAATGAAGTTTCTGCTGCTAACTTTGAGGATCCTGTATAGCGTGACTTAGCACCAGTGGCAGTGTCATCTTTGTTCAAGCGAAGTCAATTGACACTACTTCGTAAAATTCCAAAACGTAGATAGGTCAATCTTTCTAAATGTATACATTGAATCTCCTTGGCTTCTTCATCTTTTTTTGAATATATATTTTGAATCTCCTTAGCAAAAATCCAGTTATTTTAGTTCTGCCACTGTTTAGCACTACTTTGGGTTATTTGAATAAGCCTTTCGGTCTAAGTAATAATTACTCATCTACAAAAATTGGAAGTGGTCTTTTGTTTAAGCACTGGTGTTGAAATCTCTTGGTATGTACTGAATAGCAACCAATAACTTTGGTCTTCATACAGATTATTGCTTCTTTTTTTTTTTTTTTAATGAAAACGACCTCAAAGAGGCAATTGATATTTGCAGTGGTCTCCTTACAGCTATCCCCTTGTTAGAAAATGATCCATTGAATCTCATGTTGAGATACACATTTAGAAGAAAAAAATATAATATCATCTGAGATTTGGATATGCAAGTAATTTGATAATCAACTAGCTTTTTAGTTTTCTAAAATGATAGTAATATACTAGATCAATTTCTTCTTAGAATGAATACATTATATATTATCTCGCATGCCTAGAAGTTCGACAATGGTGTTTTATACTGAAAACTGAGGTGTTAACTCCCGAAGGTTGAGATCTGATGTACTTGCAGTGATGGTACAATAACAAGGGATCAATGGAGGTGGTAGTGATTTCCAGGGAAAAAATATAATCACGGTGGTTGCTTCTTCTTTGTTGGTCGTATGGAATCTGTGTTCACTTTTCAGTCTTCAGTCATCTGTTGCTGACTCTTAAGAGTAGCATGCACAATGTTGATGACTGTTGGACTTATTAAAGGAATGAGTTTTGTCAACTAGGAGATACTCCCTCCTTTTCAATTTGTTTGTCTGGTTTTGACTTGGTACAAAGGTAAGAAAGTGACGAGACTTTTGAATCTTGTGGTGTTAAACATGTCGTGTGGAGTTGCAAAAAAGGGAACGAGGCATTTTTTTTTGAAACGGACTAAAAAGGAAAGTAAGACAAACAAGTTGAATCGGAGGGAGTAGTAATTACTAAGAACGAGCTCTGATATGCTTTGCAGCTTCTAGGTCACTCACATAAGAATTATCAAGTAGTTGCTTTGTGTGTGGTTTTTATGAAAATTGTAGTGCTTGGCGATATATTGGTGATTCTTCAAGTTAAATTTAGGTGCTTTCAACGGGAGCTAATCCAAGGTATTTCTTGATCTTTTTTCTCTTGCAGCATGACTGTCATTTTCTTTGCAAAAGAAGGTGAAGATTGTTGTTTGACTCCCATGAAGGAAAGCTTGCTTCCACCAGTAACTTTTGAGTTTCAAAAAGGTTTAGCTCAGAAATTTAGGCAACCGTCTGGTACTGGCATTGATTTTTCAATGTTTGAAGAGGCAGAATTGTCCAAAGATAGTGAGGCAGATGTGTATCCACTTGCAGTCAAGGCGGAGGCAACATTAGATAACCCAAGTGAATCAGAGGATGGAAGTGCAGCATCAGGATCCACTAATTCACAGATCACTCAAGCAGTTTTTGAGAAGGACAAAGGTGAGTACCATGTTAGGGCGGTGAAGCAGATCCTGTGGGTCAATGACATGAGGTATGAATTGCAAGAGATTTTTGGGATTGGTAATTCAGTTGAAAGTGACTTCGATGGAAATGATCCCGGAAAAGAATGTGTGATTTGCCTCTCTGAACCTCGGGATACCACTGTACTTCCATGTCGGCACATGGTATGATTCTGCCCTTTGTTAACAATTTATGTCGAGTTTTGGTCTCAATATGTTCCCAAACGTCTGCAATGTCATGATTATACGTAGTACAGAATTTATGCATTCTGCAGTTCAACAGTTTTGCTTATAGAATCTGAAAACAATTCCTTCCGACACTTCAAGTCTTCCTAGGGTGTGTTTGGTATGGAGGAAAAAATGTTTTCCAGTTTTTAAATGTTCAGTTGGTTAAAATTTTGAAAAAAAATTTCTCTAGGAAAACAAGTATTTTTTAAAATGAAGAAAATGACTTCCCTAGAGAAAGAAGGGGAAAGATGTTCCACAGGTGGTGTCCTTGCCACCCTCTAACATACATCATCTTCACCCACACCCCCTGTAGCCTCTATCCCCGCCACCCCACGCCCTTACCTCTACTCCTATCTTCCATTATATTGGTTCAGGTGATATACAAATGCTTTAAGGATAATATTTTCTGCTTATTTTCCTGGGAAACATTTTCCTTCCTACCGACCACACCCTTAAAGTCCACTGTTTTCCCTCTTCTTTGCTGTGTGACCTCTCCTTAGCACACCTCACACTTTCTCTTGCCACTGGCTGAGTGATTTAAGATTTTAGTAAAATTGATATTCTGAAGCAGACTTCGTTTTAAGCTTCATTTTCACTGCAGACATTTATTGATTGAACAAGCCATTTATAAAATACCTGTTTCTGGATTAGGACGTGTCTCTCTCTATTGGGCGGAGATCCGAAAGGAGCTACCACATCTTACCTTGAATTAAAATACTTCTGCTCAACTTCCCATCGAGGAAGCACCAACCCGTTTTTCACCTTGAATTGATCAAACCATGCTGAATTTCTTATGTTTCGCGGAGGGATTAGACCCTGCATTTCTTTTAGTTGACAAAACTCTAATATAATGTACATTACATAACTCAGTGTCTTTCTTCACGCAGTGTATGTGTAGCGGATGTGCAAAGGTTTTGAGGTTCCAGACGAATCGCTGTCCCATCTGTCGACAGCCAGTTGAACGCCTCCTGGAGATCAAGGTCAGCGAAGGCGCAGCTGAAGAGTAAAAATAGGAAGAGTTGCCATAATCCACTCTTGTATAAATATCAGTATTTCTCTTTCTTGACCTTTTGGTTTTCCTTCTCTATCCATCCCCCCTAGAGTAGAATAATCCAACAGCTGAAAGTCTCTTAGTTATA----G----T---TTGCCAGTCCTACAAATGGATCATCGAGACATGCTGTTGAGCTAAGCCCCCTTTTTTACTTTTTTTTTTCCTTTTAAAGAGTGTTTTTGAATTCCATGCATTTTTTTAAAGAAGTTGTTATAACT-ATACCTAGTAAATATTCTGTTTGCTTTG</genome_strand>
        <mrna_strand>GTTAACTTGAAGAAGGAGACTCTAAGGATTGAGCCTGATGAAGCTAATCCTGGCAAGTATCTTGTGGCCTTCACTTTTGATGCCACAGTTCCTGGGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGACTGTCATTTTCTTTGCAAAAGAAGGTGAAGATTGTTGTTTGACTCCCATGAAGGAAAGCTTGCTTCCACCAGTAACTTTTGAGTTTCAAAAAGGTTTAGCTCAGAAATTTAGGCAACCGTCTGGTACTGGCATTGATTTTTCAATGTTTGAAGAGGCAGAATTGTCCAAAGATAGTGAGGCAGATGTGTATCCACTTGCAGTCAAGGCGGAGGCAACATTAGATAACCCAAGTGAATCAGAGGATGGAAGTGCAGCATCAGGATCCACTAATTCACAGATCACTCAAGCAGTTTTTGAGAAGGACAAAGGTGAGTACCATGTTAGGGTGGTGAAGCAGATCCTGTGGGTCAATGACATGAGGTATGAATTGCAAGAGATTTTTGGGATTGGTAATTCAGTTGAAAGTGACTTCGATGGAAATGATCCCGGAAAAGAATGTGTGATTTGCCTCTCTGAACCTCGGGATACCACTGTACTTCCATGTCGGCACATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATGTGTAGCGGATGTGCAAAGGTTTTGAGGTTCCAGACGAATCGCTGTCCCATCTGTCGACAGCCAGTTGAACGCCTCCTGGAGATCAAGGTCAGCGAAGGCGCAGCTGAAGAGTAAAAATAGGAAGAGTTGCCATAATCCACTCTTGTATAAATATCAGTATTTCTCTTTCTTGACCTTTTGGTTTTCCTTCTCTATCCAT-CCCCCTAGAGTAAAATAATCCAACAGCTGAAAGTCTCTTAGTTATAGTTTGCCATTGGGTTGCCAGTCCTACAAATGGATCATCGAGACATGCTGTTGAGCTAACCCCCCTTTTTTACTTTTTTTTTTCCTTTTAAAAAGTGTTTTTGAA-TCCAGGCATTTTTTTAAA-AAATTGTTAAAACTAACCCCTAGAAAAT-TTCTGTTTGCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E708234" ref_strand="+" ref_description="SGN-E708234 [FA35AH02]">
      <seq>ctttacttgaagaaggagactctaaggattgagcctgatgaagctaatcctggcaagtatcttgtggccttcacttttgatgccacagttcctgggagcatgactgtcattttctttgcaaaagaaggtgaagattgttgtttgactcccatgaaggaaagcttgcttccaccagtaacttttgagtttcaaaaaggtttagctcagaaatttaggcaaccgtctggtactggcattgatttttcaatgtttgaagaggcagaattgtccaaagatagtgaggcagatgtgtatccacttgcagtcaaggcggaggcaacattagataacccaagtgaatcagaggatggaagtgcagcatcaggatccactaattcacagatcactcaagcagtttttgagaaggacaaaggtgagtaccatgttagggtggtgaagcagatcctgtgggtcaatgacatgaggtatgaattgcaagagatttttgggattggtaattcagttgaaagtgacttcgatggaaatgatcccggaaaagaatgtgtgatttgcctctctgaacctcgggataccactgtacttccatgtcggcacatgtgtatgtgtagcggatgtgcaaaggttttgaggttccagacgaatcgctgtcccatctgtcgacagccagttgaacgcctcctggagatcaaggtcagcgaaggcgcagctgaagagtaaaaataggaagagttgccataatccactcttgtataaatatcagtatttctctttcttgaccttttggttttccttctctatccatcccccctagagtagaataatccaacagctgaaagtctcttagttatagtttgccagtcctacaaatggatcatcgagacatgctgttgagctaaaccccttttttacttttttttttccttttaaagagtgttttttgatttccctgcatttttttaaaaatttgttaatacttatccctggtaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="+" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="47221" stop="52217"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47520" g_stop="47617" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47618" i_stop="50075" i_length="2458">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50076" g_stop="50574" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="597" r_length="499" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50575" i_stop="51524" i_length="950">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51525" g_stop="51897" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="598" r_stop="969" r_length="372" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="986" polyA_stop="999"/>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="+" ref_id="SGN-E708234" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>970</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E708234" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47520" e_stop="47617"/>
          <exon e_start="50076" e_stop="50574"/>
          <exon e_start="51525" e_stop="51897"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAACTTGAAGAAGGAGACTCTAAGGATTGAGCCTGATGAAGCTAATCCTGGCAAGTATCTTGTGGCCTTCACTTTTGATGCCACAGTTCCTGGGAGGTAAAAAAAGTGTCTTTTTTTCATTTTACCTGTTTGTTTATTGGTGAAGTTTGTGCAAATTGATGTTAGTATATGGTATTCGCTTGAGTCTTGACTGTTTCAGTTGGAGTGTATTCAAATATGTGCAGTAGTGTTAGTACTTGTTCATTAGCCGAGGTCTATCGGAATTAACCTCTTTATCTACTAGGTATGGTATGGTCTGTGTACCGCAGACTCGCCTTGTGAGATTAAAGTGAGTATGTTGTTGTTTAGTAGTACTTGGCTCATAAAGTTGAAATAAACAAGAGTTTCAACTTTGTACTTTTCCATCTGAATACTTTAATTTGATTGTTTTTTATGGGGTCAGAGTTAAAAACTTCAACTTGACTTTGGTACTGTGTTAGTATTGTGGAATATAAGTTAAACAATGGCTTAATTGGTACCTTTCCCTTGAATTCTTTAGTTTGATGGTTTCTTACAGGGTCAGAGTTAAAAACTTCAACTTGACTTTGGTACTATGTTAGTATTTTGGAAAAAGGTTTGGTTAAATAATGGTTTTGGAAATTATCACCTTTCCAGTAAAGTCCTTAGTTTGATTGTTTCTTGCAGGGACTATAACTTGACTTTAGTATTATGGAAAAATAGTTAAATAATGGAATTGAAAGTCAATTTGATATATCAGACATGATATTATAGTTTATTTTTGAATATGTAAGTGTATTTAAGTTCTTGAAGTATGTGTAGTTGTATTGTATGATAAAATTTTCAATAGAGTGGCGTCCAACATCTTGGAATGTTCCAGCTGGGGTGAGTATGTGTTTAAAATCGGGATGGAGGCAGAGGTACTAGATTTATTTGATCAAGAAAGTTTTGAACTTTTTAGTCTTTTCATTAATTTTGGAAACACATATAGACACTAGTAGGATTATTGCTATTGGGTTTGCTAGGGATTAATTTGTACTTAAGCTTTCTGTGAGACAATCTTTTGACAACCTCCCGTGTCATAAATGCAGATTGAGAAATTGAGAACTTGATCAGCAAATTTTATTTTATCTTGGACATTAATGTAATTTCATTTTGTTGTTACCAGTCCTGCAATCTCTTTAACAACCTTGGATGAGTAGATAAATGTGTCTATTTTAGAGAAAACAAATGAAGTTTCTGCTGCTAACTTTGAGGATCCTGTATAGCGTGACTTAGCACCAGTGGCAGTGTCATCTTTGTTCAAGCGAAGTCAATTGACACTACTTCGTAAAATTCCAAAACGTAGATAGGTCAATCTTTCTAAATGTATACATTGAATCTCCTTGGCTTCTTCATCTTTTTTTGAATATATATTTTGAATCTCCTTAGCAAAAATCCAGTTATTTTAGTTCTGCCACTGTTTAGCACTACTTTGGGTTATTTGAATAAGCCTTTCGGTCTAAGTAATAATTACTCATCTACAAAAATTGGAAGTGGTCTTTTGTTTAAGCACTGGTGTTGAAATCTCTTGGTATGTACTGAATAGCAACCAATAACTTTGGTCTTCATACAGATTATTGCTTCTTTTTTTTTTTTTTTAATGAAAACGACCTCAAAGAGGCAATTGATATTTGCAGTGGTCTCCTTACAGCTATCCCCTTGTTAGAAAATGATCCATTGAATCTCATGTTGAGATACACATTTAGAAGAAAAAAATATAATATCATCTGAGATTTGGATATGCAAGTAATTTGATAATCAACTAGCTTTTTAGTTTTCTAAAATGATAGTAATATACTAGATCAATTTCTTCTTAGAATGAATACATTATATATTATCTCGCATGCCTAGAAGTTCGACAATGGTGTTTTATACTGAAAACTGAGGTGTTAACTCCCGAAGGTTGAGATCTGATGTACTTGCAGTGATGGTACAATAACAAGGGATCAATGGAGGTGGTAGTGATTTCCAGGGAAAAAATATAATCACGGTGGTTGCTTCTTCTTTGTTGGTCGTATGGAATCTGTGTTCACTTTTCAGTCTTCAGTCATCTGTTGCTGACTCTTAAGAGTAGCATGCACAATGTTGATGACTGTTGGACTTATTAAAGGAATGAGTTTTGTCAACTAGGAGATACTCCCTCCTTTTCAATTTGTTTGTCTGGTTTTGACTTGGTACAAAGGTAAGAAAGTGACGAGACTTTTGAATCTTGTGGTGTTAAACATGTCGTGTGGAGTTGCAAAAAAGGGAACGAGGCATTTTTTTTTGAAACGGACTAAAAAGGAAAGTAAGACAAACAAGTTGAATCGGAGGGAGTAGTAATTACTAAGAACGAGCTCTGATATGCTTTGCAGCTTCTAGGTCACTCACATAAGAATTATCAAGTAGTTGCTTTGTGTGTGGTTTTTATGAAAATTGTAGTGCTTGGCGATATATTGGTGATTCTTCAAGTTAAATTTAGGTGCTTTCAACGGGAGCTAATCCAAGGTATTTCTTGATCTTTTTTCTCTTGCAGCATGACTGTCATTTTCTTTGCAAAAGAAGGTGAAGATTGTTGTTTGACTCCCATGAAGGAAAGCTTGCTTCCACCAGTAACTTTTGAGTTTCAAAAAGGTTTAGCTCAGAAATTTAGGCAACCGTCTGGTACTGGCATTGATTTTTCAATGTTTGAAGAGGCAGAATTGTCCAAAGATAGTGAGGCAGATGTGTATCCACTTGCAGTCAAGGCGGAGGCAACATTAGATAACCCAAGTGAATCAGAGGATGGAAGTGCAGCATCAGGATCCACTAATTCACAGATCACTCAAGCAGTTTTTGAGAAGGACAAAGGTGAGTACCATGTTAGGGCGGTGAAGCAGATCCTGTGGGTCAATGACATGAGGTATGAATTGCAAGAGATTTTTGGGATTGGTAATTCAGTTGAAAGTGACTTCGATGGAAATGATCCCGGAAAAGAATGTGTGATTTGCCTCTCTGAACCTCGGGATACCACTGTACTTCCATGTCGGCACATGGTATGATTCTGCCCTTTGTTAACAATTTATGTCGAGTTTTGGTCTCAATATGTTCCCAAACGTCTGCAATGTCATGATTATACGTAGTACAGAATTTATGCATTCTGCAGTTCAACAGTTTTGCTTATAGAATCTGAAAACAATTCCTTCCGACACTTCAAGTCTTCCTAGGGTGTGTTTGGTATGGAGGAAAAAATGTTTTCCAGTTTTTAAATGTTCAGTTGGTTAAAATTTTGAAAAAAAATTTCTCTAGGAAAACAAGTATTTTTTAAAATGAAGAAAATGACTTCCCTAGAGAAAGAAGGGGAAAGATGTTCCACAGGTGGTGTCCTTGCCACCCTCTAACATACATCATCTTCACCCACACCCCCTGTAGCCTCTATCCCCGCCACCCCACGCCCTTACCTCTACTCCTATCTTCCATTATATTGGTTCAGGTGATATACAAATGCTTTAAGGATAATATTTTCTGCTTATTTTCCTGGGAAACATTTTCCTTCCTACCGACCACACCCTTAAAGTCCACTGTTTTCCCTCTTCTTTGCTGTGTGACCTCTCCTTAGCACACCTCACACTTTCTCTTGCCACTGGCTGAGTGATTTAAGATTTTAGTAAAATTGATATTCTGAAGCAGACTTCGTTTTAAGCTTCATTTTCACTGCAGACATTTATTGATTGAACAAGCCATTTATAAAATACCTGTTTCTGGATTAGGACGTGTCTCTCTCTATTGGGCGGAGATCCGAAAGGAGCTACCACATCTTACCTTGAATTAAAATACTTCTGCTCAACTTCCCATCGAGGAAGCACCAACCCGTTTTTCACCTTGAATTGATCAAACCATGCTGAATTTCTTATGTTTCGCGGAGGGATTAGACCCTGCATTTCTTTTAGTTGACAAAACTCTAATATAATGTACATTACATAACTCAGTGTCTTTCTTCACGCAGTGTATGTGTAGCGGATGTGCAAAGGTTTTGAGGTTCCAGACGAATCGCTGTCCCATCTGTCGACAGCCAGTTGAACGCCTCCTGGAGATCAAGGTCAGCGAAGGCGCAGCTGAAGAGTAAAAATAGGAAGAGTTGCCATAATCCACTCTTGTATAAATATCAGTATTTCTCTTTCTTGACCTTTTGGTTTTCCTTCTCTATCCATCCCCCCTAGAGTAGAATAATCCAACAGCTGAAAGTCTCTTAGTTATAGTTTGCCAGTCCTACAAATGGATCATCGAGACATGCTGTTGAGCTAAGCCCCCTTTTTTACTTTTTTTTTTCCTTTTAAAGAGTG-TTTTTGAATTCCATGCATTTTTTTAAAGAAGTTGTT</genome_strand>
        <mrna_strand>CTTTACTTGAAGAAGGAGACTCTAAGGATTGAGCCTGATGAAGCTAATCCTGGCAAGTATCTTGTGGCCTTCACTTTTGATGCCACAGTTCCTGGGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGACTGTCATTTTCTTTGCAAAAGAAGGTGAAGATTGTTGTTTGACTCCCATGAAGGAAAGCTTGCTTCCACCAGTAACTTTTGAGTTTCAAAAAGGTTTAGCTCAGAAATTTAGGCAACCGTCTGGTACTGGCATTGATTTTTCAATGTTTGAAGAGGCAGAATTGTCCAAAGATAGTGAGGCAGATGTGTATCCACTTGCAGTCAAGGCGGAGGCAACATTAGATAACCCAAGTGAATCAGAGGATGGAAGTGCAGCATCAGGATCCACTAATTCACAGATCACTCAAGCAGTTTTTGAGAAGGACAAAGGTGAGTACCATGTTAGGGTGGTGAAGCAGATCCTGTGGGTCAATGACATGAGGTATGAATTGCAAGAGATTTTTGGGATTGGTAATTCAGTTGAAAGTGACTTCGATGGAAATGATCCCGGAAAAGAATGTGTGATTTGCCTCTCTGAACCTCGGGATACCACTGTACTTCCATGTCGGCACATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATGTGTAGCGGATGTGCAAAGGTTTTGAGGTTCCAGACGAATCGCTGTCCCATCTGTCGACAGCCAGTTGAACGCCTCCTGGAGATCAAGGTCAGCGAAGGCGCAGCTGAAGAGTAAAAATAGGAAGAGTTGCCATAATCCACTCTTGTATAAATATCAGTATTTCTCTTTCTTGACCTTTTGGTTTTCCTTCTCTATCCATCCCCCCTAGAGTAGAATAATCCAACAGCTGAAAGTCTCTTAGTTATAGTTTGCCAGTCCTACAAATGGATCATCGAGACATGCTGTTGAGCTAA-ACCCCTTTTTTACTTTTTTTTTTCCTTTTAAAGAGTGTTTTTTGATTTCCCTGCATTTTTTTAAA-AATTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E293969" ref_strand="+" ref_description="SGN-E293969 [cLET-13-H5]">
      <seq>gaagaaggagactctaaggattgagcctgatgaagctaatcctggcaagtatcttgtggccttcacttttgatgccacagttcctgggagcatgactgtcattttctttgcaaaagaaggtgaagattgttgtttgactcccatgaaggaaagcttgcttccaccagtaacttttgagtttcaaaaaggtttagctcagaaatttaggcaaccgtctggtactggcattgatttttcaatgtttgaagaggcagaattgtccaaagatagtgaggcagatgtgtatccacttgcagtcaaggcggaggcaacattagataacccaagtgaatcagaggatggaagtgcagcatcaggatccactaattcacagatcactcaagcagtttttgagaaggacaaaggtgagtaccatgttagggtggtgaagcagatcctgtgggtcaatgacatgaggtatgaattgcaagagatttttgggattggtaattcagttgaaagtgacttcgatggaaatgatcccggaaaagaatgtgtgatttgcctctctgaacctcgggataccactgtacttccatgtcggcacatgtgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="+" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="47228" stop="50877"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47528" g_stop="47617" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47618" i_stop="50075" i_length="2458">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50076" g_stop="50574" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="589" r_length="499" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="+" ref_id="SGN-E293969" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E293969" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47528" e_stop="47617"/>
          <exon e_start="50076" e_stop="50574"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAGGAGACTCTAAGGATTGAGCCTGATGAAGCTAATCCTGGCAAGTATCTTGTGGCCTTCACTTTTGATGCCACAGTTCCTGGGAGGTAAAAAAAGTGTCTTTTTTTCATTTTACCTGTTTGTTTATTGGTGAAGTTTGTGCAAATTGATGTTAGTATATGGTATTCGCTTGAGTCTTGACTGTTTCAGTTGGAGTGTATTCAAATATGTGCAGTAGTGTTAGTACTTGTTCATTAGCCGAGGTCTATCGGAATTAACCTCTTTATCTACTAGGTATGGTATGGTCTGTGTACCGCAGACTCGCCTTGTGAGATTAAAGTGAGTATGTTGTTGTTTAGTAGTACTTGGCTCATAAAGTTGAAATAAACAAGAGTTTCAACTTTGTACTTTTCCATCTGAATACTTTAATTTGATTGTTTTTTATGGGGTCAGAGTTAAAAACTTCAACTTGACTTTGGTACTGTGTTAGTATTGTGGAATATAAGTTAAACAATGGCTTAATTGGTACCTTTCCCTTGAATTCTTTAGTTTGATGGTTTCTTACAGGGTCAGAGTTAAAAACTTCAACTTGACTTTGGTACTATGTTAGTATTTTGGAAAAAGGTTTGGTTAAATAATGGTTTTGGAAATTATCACCTTTCCAGTAAAGTCCTTAGTTTGATTGTTTCTTGCAGGGACTATAACTTGACTTTAGTATTATGGAAAAATAGTTAAATAATGGAATTGAAAGTCAATTTGATATATCAGACATGATATTATAGTTTATTTTTGAATATGTAAGTGTATTTAAGTTCTTGAAGTATGTGTAGTTGTATTGTATGATAAAATTTTCAATAGAGTGGCGTCCAACATCTTGGAATGTTCCAGCTGGGGTGAGTATGTGTTTAAAATCGGGATGGAGGCAGAGGTACTAGATTTATTTGATCAAGAAAGTTTTGAACTTTTTAGTCTTTTCATTAATTTTGGAAACACATATAGACACTAGTAGGATTATTGCTATTGGGTTTGCTAGGGATTAATTTGTACTTAAGCTTTCTGTGAGACAATCTTTTGACAACCTCCCGTGTCATAAATGCAGATTGAGAAATTGAGAACTTGATCAGCAAATTTTATTTTATCTTGGACATTAATGTAATTTCATTTTGTTGTTACCAGTCCTGCAATCTCTTTAACAACCTTGGATGAGTAGATAAATGTGTCTATTTTAGAGAAAACAAATGAAGTTTCTGCTGCTAACTTTGAGGATCCTGTATAGCGTGACTTAGCACCAGTGGCAGTGTCATCTTTGTTCAAGCGAAGTCAATTGACACTACTTCGTAAAATTCCAAAACGTAGATAGGTCAATCTTTCTAAATGTATACATTGAATCTCCTTGGCTTCTTCATCTTTTTTTGAATATATATTTTGAATCTCCTTAGCAAAAATCCAGTTATTTTAGTTCTGCCACTGTTTAGCACTACTTTGGGTTATTTGAATAAGCCTTTCGGTCTAAGTAATAATTACTCATCTACAAAAATTGGAAGTGGTCTTTTGTTTAAGCACTGGTGTTGAAATCTCTTGGTATGTACTGAATAGCAACCAATAACTTTGGTCTTCATACAGATTATTGCTTCTTTTTTTTTTTTTTTAATGAAAACGACCTCAAAGAGGCAATTGATATTTGCAGTGGTCTCCTTACAGCTATCCCCTTGTTAGAAAATGATCCATTGAATCTCATGTTGAGATACACATTTAGAAGAAAAAAATATAATATCATCTGAGATTTGGATATGCAAGTAATTTGATAATCAACTAGCTTTTTAGTTTTCTAAAATGATAGTAATATACTAGATCAATTTCTTCTTAGAATGAATACATTATATATTATCTCGCATGCCTAGAAGTTCGACAATGGTGTTTTATACTGAAAACTGAGGTGTTAACTCCCGAAGGTTGAGATCTGATGTACTTGCAGTGATGGTACAATAACAAGGGATCAATGGAGGTGGTAGTGATTTCCAGGGAAAAAATATAATCACGGTGGTTGCTTCTTCTTTGTTGGTCGTATGGAATCTGTGTTCACTTTTCAGTCTTCAGTCATCTGTTGCTGACTCTTAAGAGTAGCATGCACAATGTTGATGACTGTTGGACTTATTAAAGGAATGAGTTTTGTCAACTAGGAGATACTCCCTCCTTTTCAATTTGTTTGTCTGGTTTTGACTTGGTACAAAGGTAAGAAAGTGACGAGACTTTTGAATCTTGTGGTGTTAAACATGTCGTGTGGAGTTGCAAAAAAGGGAACGAGGCATTTTTTTTTGAAACGGACTAAAAAGGAAAGTAAGACAAACAAGTTGAATCGGAGGGAGTAGTAATTACTAAGAACGAGCTCTGATATGCTTTGCAGCTTCTAGGTCACTCACATAAGAATTATCAAGTAGTTGCTTTGTGTGTGGTTTTTATGAAAATTGTAGTGCTTGGCGATATATTGGTGATTCTTCAAGTTAAATTTAGGTGCTTTCAACGGGAGCTAATCCAAGGTATTTCTTGATCTTTTTTCTCTTGCAGCATGACTGTCATTTTCTTTGCAAAAGAAGGTGAAGATTGTTGTTTGACTCCCATGAAGGAAAGCTTGCTTCCACCAGTAACTTTTGAGTTTCAAAAAGGTTTAGCTCAGAAATTTAGGCAACCGTCTGGTACTGGCATTGATTTTTCAATGTTTGAAGAGGCAGAATTGTCCAAAGATAGTGAGGCAGATGTGTATCCACTTGCAGTCAAGGCGGAGGCAACATTAGATAACCCAAGTGAATCAGAGGATGGAAGTGCAGCATCAGGATCCACTAATTCACAGATCACTCAAGCAGTTTTTGAGAAGGACAAAGGTGAGTACCATGTTAGGGCGGTGAAGCAGATCCTGTGGGTCAATGACATGAGGTATGAATTGCAAGAGATTTTTGGGATTGGTAATTCAGTTGAAAGTGACTTCGATGGAAATGATCCCGGAAAAGAATGTGTGATTTGCCTCTCTGAACCTCGGGATACCACTGTACTTCCATGTCGGCACATG</genome_strand>
        <mrna_strand>GAAGAAGGAGACTCTAAGGATTGAGCCTGATGAAGCTAATCCTGGCAAGTATCTTGTGGCCTTCACTTTTGATGCCACAGTTCCTGGGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGACTGTCATTTTCTTTGCAAAAGAAGGTGAAGATTGTTGTTTGACTCCCATGAAGGAAAGCTTGCTTCCACCAGTAACTTTTGAGTTTCAAAAAGGTTTAGCTCAGAAATTTAGGCAACCGTCTGGTACTGGCATTGATTTTTCAATGTTTGAAGAGGCAGAATTGTCCAAAGATAGTGAGGCAGATGTGTATCCACTTGCAGTCAAGGCGGAGGCAACATTAGATAACCCAAGTGAATCAGAGGATGGAAGTGCAGCATCAGGATCCACTAATTCACAGATCACTCAAGCAGTTTTTGAGAAGGACAAAGGTGAGTACCATGTTAGGGTGGTGAAGCAGATCCTGTGGGTCAATGACATGAGGTATGAATTGCAAGAGATTTTTGGGATTGGTAATTCAGTTGAAAGTGACTTCGATGGAAATGATCCCGGAAAAGAATGTGTGATTTGCCTCTCTGAACCTCGGGATACCACTGTACTTCCATGTCGGCACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E701796" ref_strand="+" ref_description="SGN-E701796 [FA16DH06]">
      <seq>agactctaaggattgagcctgatgaagctaatcctggcaagtatcttgtggccttcacttttgatgccacagttcctgggagcatgactgtcattttctttgcaaaagaaggtgaagattgttgtttgactcccatgaaggaaagcttgcttccaccagtaacttttgagtttcaaaaaggtttagctcagaaatttaggcaaccgtctggtactggcattgatttttcaatgtttgaagaggcagaattgtccaaagatagtgaggcagatgtgtatccacttgcagtcaaggcggaggcaacattagataacccaagtgaatcagaggatggaagtgcagcatcaggatccactaattcacagatcactcaagcagtttttgagaaggacaaaggtgagtaccatgttagggtggtgaagcagatcctgtgggtcaatgacatgaggtatgaattgcaagagatttttgggattggtaattcagttgaaagtgacttcgatggaaatgatcccggaaaagaatgtgtgatttgcctctctgaacctcgggataccactgtacttccatgtcggcacatgtgtatgtgtagcggatgtgcaaaggttttgaggttccagacgaatcgctgtcccatctgtcgacagccagttgaacgcctcctggagatcaaggtcagcgaaggcgcagctgaagagtaaaaataggaagagttgccataatccactcttgtataaatatcagtatttctctttcttgaccttttggttttccttctctatccatccccctagagtagaataatccaacagctgaaagtctcttagttatagtttgcccattgggttgccagtcctacaaatggatcatcgagacatgctgntgagctaagccccctttttacttttttttttccttttaaggaggntttttgaattccatgcattttttttaagaaagtggtaataactatacctaanaaattatcgtgtttgcctggaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="+" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="47236" stop="52237"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47536" g_stop="47617" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47618" i_stop="50075" i_length="2458">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50076" g_stop="50574" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="581" r_length="499" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50575" i_stop="51524" i_length="950">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51525" g_stop="51916" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="582" r_stop="984" r_length="403" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1001" polyA_stop="1015"/>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="+" ref_id="SGN-E701796" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>973</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701796" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47536" e_stop="47617"/>
          <exon e_start="50076" e_stop="50574"/>
          <exon e_start="51525" e_stop="51916"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACTCTAAGGATTGAGCCTGATGAAGCTAATCCTGGCAAGTATCTTGTGGCCTTCACTTTTGATGCCACAGTTCCTGGGAGGTAAAAAAAGTGTCTTTTTTTCATTTTACCTGTTTGTTTATTGGTGAAGTTTGTGCAAATTGATGTTAGTATATGGTATTCGCTTGAGTCTTGACTGTTTCAGTTGGAGTGTATTCAAATATGTGCAGTAGTGTTAGTACTTGTTCATTAGCCGAGGTCTATCGGAATTAACCTCTTTATCTACTAGGTATGGTATGGTCTGTGTACCGCAGACTCGCCTTGTGAGATTAAAGTGAGTATGTTGTTGTTTAGTAGTACTTGGCTCATAAAGTTGAAATAAACAAGAGTTTCAACTTTGTACTTTTCCATCTGAATACTTTAATTTGATTGTTTTTTATGGGGTCAGAGTTAAAAACTTCAACTTGACTTTGGTACTGTGTTAGTATTGTGGAATATAAGTTAAACAATGGCTTAATTGGTACCTTTCCCTTGAATTCTTTAGTTTGATGGTTTCTTACAGGGTCAGAGTTAAAAACTTCAACTTGACTTTGGTACTATGTTAGTATTTTGGAAAAAGGTTTGGTTAAATAATGGTTTTGGAAATTATCACCTTTCCAGTAAAGTCCTTAGTTTGATTGTTTCTTGCAGGGACTATAACTTGACTTTAGTATTATGGAAAAATAGTTAAATAATGGAATTGAAAGTCAATTTGATATATCAGACATGATATTATAGTTTATTTTTGAATATGTAAGTGTATTTAAGTTCTTGAAGTATGTGTAGTTGTATTGTATGATAAAATTTTCAATAGAGTGGCGTCCAACATCTTGGAATGTTCCAGCTGGGGTGAGTATGTGTTTAAAATCGGGATGGAGGCAGAGGTACTAGATTTATTTGATCAAGAAAGTTTTGAACTTTTTAGTCTTTTCATTAATTTTGGAAACACATATAGACACTAGTAGGATTATTGCTATTGGGTTTGCTAGGGATTAATTTGTACTTAAGCTTTCTGTGAGACAATCTTTTGACAACCTCCCGTGTCATAAATGCAGATTGAGAAATTGAGAACTTGATCAGCAAATTTTATTTTATCTTGGACATTAATGTAATTTCATTTTGTTGTTACCAGTCCTGCAATCTCTTTAACAACCTTGGATGAGTAGATAAATGTGTCTATTTTAGAGAAAACAAATGAAGTTTCTGCTGCTAACTTTGAGGATCCTGTATAGCGTGACTTAGCACCAGTGGCAGTGTCATCTTTGTTCAAGCGAAGTCAATTGACACTACTTCGTAAAATTCCAAAACGTAGATAGGTCAATCTTTCTAAATGTATACATTGAATCTCCTTGGCTTCTTCATCTTTTTTTGAATATATATTTTGAATCTCCTTAGCAAAAATCCAGTTATTTTAGTTCTGCCACTGTTTAGCACTACTTTGGGTTATTTGAATAAGCCTTTCGGTCTAAGTAATAATTACTCATCTACAAAAATTGGAAGTGGTCTTTTGTTTAAGCACTGGTGTTGAAATCTCTTGGTATGTACTGAATAGCAACCAATAACTTTGGTCTTCATACAGATTATTGCTTCTTTTTTTTTTTTTTTAATGAAAACGACCTCAAAGAGGCAATTGATATTTGCAGTGGTCTCCTTACAGCTATCCCCTTGTTAGAAAATGATCCATTGAATCTCATGTTGAGATACACATTTAGAAGAAAAAAATATAATATCATCTGAGATTTGGATATGCAAGTAATTTGATAATCAACTAGCTTTTTAGTTTTCTAAAATGATAGTAATATACTAGATCAATTTCTTCTTAGAATGAATACATTATATATTATCTCGCATGCCTAGAAGTTCGACAATGGTGTTTTATACTGAAAACTGAGGTGTTAACTCCCGAAGGTTGAGATCTGATGTACTTGCAGTGATGGTACAATAACAAGGGATCAATGGAGGTGGTAGTGATTTCCAGGGAAAAAATATAATCACGGTGGTTGCTTCTTCTTTGTTGGTCGTATGGAATCTGTGTTCACTTTTCAGTCTTCAGTCATCTGTTGCTGACTCTTAAGAGTAGCATGCACAATGTTGATGACTGTTGGACTTATTAAAGGAATGAGTTTTGTCAACTAGGAGATACTCCCTCCTTTTCAATTTGTTTGTCTGGTTTTGACTTGGTACAAAGGTAAGAAAGTGACGAGACTTTTGAATCTTGTGGTGTTAAACATGTCGTGTGGAGTTGCAAAAAAGGGAACGAGGCATTTTTTTTTGAAACGGACTAAAAAGGAAAGTAAGACAAACAAGTTGAATCGGAGGGAGTAGTAATTACTAAGAACGAGCTCTGATATGCTTTGCAGCTTCTAGGTCACTCACATAAGAATTATCAAGTAGTTGCTTTGTGTGTGGTTTTTATGAAAATTGTAGTGCTTGGCGATATATTGGTGATTCTTCAAGTTAAATTTAGGTGCTTTCAACGGGAGCTAATCCAAGGTATTTCTTGATCTTTTTTCTCTTGCAGCATGACTGTCATTTTCTTTGCAAAAGAAGGTGAAGATTGTTGTTTGACTCCCATGAAGGAAAGCTTGCTTCCACCAGTAACTTTTGAGTTTCAAAAAGGTTTAGCTCAGAAATTTAGGCAACCGTCTGGTACTGGCATTGATTTTTCAATGTTTGAAGAGGCAGAATTGTCCAAAGATAGTGAGGCAGATGTGTATCCACTTGCAGTCAAGGCGGAGGCAACATTAGATAACCCAAGTGAATCAGAGGATGGAAGTGCAGCATCAGGATCCACTAATTCACAGATCACTCAAGCAGTTTTTGAGAAGGACAAAGGTGAGTACCATGTTAGGGCGGTGAAGCAGATCCTGTGGGTCAATGACATGAGGTATGAATTGCAAGAGATTTTTGGGATTGGTAATTCAGTTGAAAGTGACTTCGATGGAAATGATCCCGGAAAAGAATGTGTGATTTGCCTCTCTGAACCTCGGGATACCACTGTACTTCCATGTCGGCACATGGTATGATTCTGCCCTTTGTTAACAATTTATGTCGAGTTTTGGTCTCAATATGTTCCCAAACGTCTGCAATGTCATGATTATACGTAGTACAGAATTTATGCATTCTGCAGTTCAACAGTTTTGCTTATAGAATCTGAAAACAATTCCTTCCGACACTTCAAGTCTTCCTAGGGTGTGTTTGGTATGGAGGAAAAAATGTTTTCCAGTTTTTAAATGTTCAGTTGGTTAAAATTTTGAAAAAAAATTTCTCTAGGAAAACAAGTATTTTTTAAAATGAAGAAAATGACTTCCCTAGAGAAAGAAGGGGAAAGATGTTCCACAGGTGGTGTCCTTGCCACCCTCTAACATACATCATCTTCACCCACACCCCCTGTAGCCTCTATCCCCGCCACCCCACGCCCTTACCTCTACTCCTATCTTCCATTATATTGGTTCAGGTGATATACAAATGCTTTAAGGATAATATTTTCTGCTTATTTTCCTGGGAAACATTTTCCTTCCTACCGACCACACCCTTAAAGTCCACTGTTTTCCCTCTTCTTTGCTGTGTGACCTCTCCTTAGCACACCTCACACTTTCTCTTGCCACTGGCTGAGTGATTTAAGATTTTAGTAAAATTGATATTCTGAAGCAGACTTCGTTTTAAGCTTCATTTTCACTGCAGACATTTATTGATTGAACAAGCCATTTATAAAATACCTGTTTCTGGATTAGGACGTGTCTCTCTCTATTGGGCGGAGATCCGAAAGGAGCTACCACATCTTACCTTGAATTAAAATACTTCTGCTCAACTTCCCATCGAGGAAGCACCAACCCGTTTTTCACCTTGAATTGATCAAACCATGCTGAATTTCTTATGTTTCGCGGAGGGATTAGACCCTGCATTTCTTTTAGTTGACAAAACTCTAATATAATGTACATTACATAACTCAGTGTCTTTCTTCACGCAGTGTATGTGTAGCGGATGTGCAAAGGTTTTGAGGTTCCAGACGAATCGCTGTCCCATCTGTCGACAGCCAGTTGAACGCCTCCTGGAGATCAAGGTCAGCGAAGGCGCAGCTGAAGAGTAAAAATAGGAAGAGTTGCCATAATCCACTCTTGTATAAATATCAGTATTTCTCTTTCTTGACCTTTTGGTTTTCCTTCTCTATCCATCCCCCCTAGAGTAGAATAATCCAACAGCTGAAAGTCTCTTAGTTATA----G-----T---TTGCCAGTCCTACAAATGGATCATCGAGACATGCTGTTGAGCTAAGCCCCCTTTTTTACTTTTTTTTTTCCTTTTAAAGAGTGTTTTTGAATTCCATGCATTTTTTTAAAG-AAGTTGTTATAACTATACCTAGTAAAT</genome_strand>
        <mrna_strand>AGACTCTAAGGATTGAGCCTGATGAAGCTAATCCTGGCAAGTATCTTGTGGCCTTCACTTTTGATGCCACAGTTCCTGGGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGACTGTCATTTTCTTTGCAAAAGAAGGTGAAGATTGTTGTTTGACTCCCATGAAGGAAAGCTTGCTTCCACCAGTAACTTTTGAGTTTCAAAAAGGTTTAGCTCAGAAATTTAGGCAACCGTCTGGTACTGGCATTGATTTTTCAATGTTTGAAGAGGCAGAATTGTCCAAAGATAGTGAGGCAGATGTGTATCCACTTGCAGTCAAGGCGGAGGCAACATTAGATAACCCAAGTGAATCAGAGGATGGAAGTGCAGCATCAGGATCCACTAATTCACAGATCACTCAAGCAGTTTTTGAGAAGGACAAAGGTGAGTACCATGTTAGGGTGGTGAAGCAGATCCTGTGGGTCAATGACATGAGGTATGAATTGCAAGAGATTTTTGGGATTGGTAATTCAGTTGAAAGTGACTTCGATGGAAATGATCCCGGAAAAGAATGTGTGATTTGCCTCTCTGAACCTCGGGATACCACTGTACTTCCATGTCGGCACATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATGTGTAGCGGATGTGCAAAGGTTTTGAGGTTCCAGACGAATCGCTGTCCCATCTGTCGACAGCCAGTTGAACGCCTCCTGGAGATCAAGGTCAGCGAAGGCGCAGCTGAAGAGTAAAAATAGGAAGAGTTGCCATAATCCACTCTTGTATAAATATCAGTATTTCTCTTTCTTGACCTTTTGGTTTTCCTTCTCTATCCAT-CCCCCTAGAGTAGAATAATCCAACAGCTGAAAGTCTCTTAGTTATAGTTTGCCCATTGGGTTGCCAGTCCTACAAATGGATCATCGAGACATGCTGNTGAGCTAAGCCCCC-TTTTTACTTTTTTTTTTCCTTTTAAGGAGGNTTTTTGAATTCCATGCATTTTTTTTAAGAAAGTGGTAATAACTATACCTAANAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E704023" ref_strand="+" ref_description="SGN-E704023 [FA23AF02]">
      <seq>agactctaaggattgagcctgatgaagctaatcctggcaagtatcttgtggccttcacttttgatgccacagttcctgggagcatgactgtcattttctttgcaaaagaaggtgaagattgttgtttgactcccatgaaggaaagcttgcttccaccagtaacttttgagtttcaaaaaggtttagctcagaaatttaggcaaccgtctggtactggcattgatttttcaatgtttgaagaggcagaattgtccaaagatagtgaggcagatgtgtatccacttgcagtcaaggcggaggcaacattagataacccaagtgaatcagaggatggaagtgcagcatcaggatccactaattcacagatcactcaagcagtttttgagaaggacaaaggtgagtaccatgttagggtggtgaagcagatcctgtgggtcaatgacatgaggtatgaattgcaagagatttttgggattggtaattcagttgaaagtgacttcgatggaaatgatcccggaaaagaatgtgtgatttgcctctctgaacctcgggataccactgtacttccatgtcggcacatgtgtatgtgtagcggatgtgcaaaggttttgaggttccagacgaatcgctgtcccatctgtcgacagccagttgaacgcctcctggagatcaaggtcagcgaaggcgcagctgaagagtaaaaataggaagagttgccataatccactcttgtataaatatcagtatttctctttcttgaccttttggttttccttctctatccatccccctagagtagaataatccaacagctgaaagtctcttagntatagtttgccattgggttgccagtcctacaaatggatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="+" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="47236" stop="52086"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47536" g_stop="47617" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47618" i_stop="50075" i_length="2458">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50076" g_stop="50574" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="581" r_length="499" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50575" i_stop="51524" i_length="950">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51525" g_stop="51784" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="582" r_stop="840" r_length="259" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="+" ref_id="SGN-E704023" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>841</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704023" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47536" e_stop="47617"/>
          <exon e_start="50076" e_stop="50574"/>
          <exon e_start="51525" e_stop="51784"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACTCTAAGGATTGAGCCTGATGAAGCTAATCCTGGCAAGTATCTTGTGGCCTTCACTTTTGATGCCACAGTTCCTGGGAGGTAAAAAAAGTGTCTTTTTTTCATTTTACCTGTTTGTTTATTGGTGAAGTTTGTGCAAATTGATGTTAGTATATGGTATTCGCTTGAGTCTTGACTGTTTCAGTTGGAGTGTATTCAAATATGTGCAGTAGTGTTAGTACTTGTTCATTAGCCGAGGTCTATCGGAATTAACCTCTTTATCTACTAGGTATGGTATGGTCTGTGTACCGCAGACTCGCCTTGTGAGATTAAAGTGAGTATGTTGTTGTTTAGTAGTACTTGGCTCATAAAGTTGAAATAAACAAGAGTTTCAACTTTGTACTTTTCCATCTGAATACTTTAATTTGATTGTTTTTTATGGGGTCAGAGTTAAAAACTTCAACTTGACTTTGGTACTGTGTTAGTATTGTGGAATATAAGTTAAACAATGGCTTAATTGGTACCTTTCCCTTGAATTCTTTAGTTTGATGGTTTCTTACAGGGTCAGAGTTAAAAACTTCAACTTGACTTTGGTACTATGTTAGTATTTTGGAAAAAGGTTTGGTTAAATAATGGTTTTGGAAATTATCACCTTTCCAGTAAAGTCCTTAGTTTGATTGTTTCTTGCAGGGACTATAACTTGACTTTAGTATTATGGAAAAATAGTTAAATAATGGAATTGAAAGTCAATTTGATATATCAGACATGATATTATAGTTTATTTTTGAATATGTAAGTGTATTTAAGTTCTTGAAGTATGTGTAGTTGTATTGTATGATAAAATTTTCAATAGAGTGGCGTCCAACATCTTGGAATGTTCCAGCTGGGGTGAGTATGTGTTTAAAATCGGGATGGAGGCAGAGGTACTAGATTTATTTGATCAAGAAAGTTTTGAACTTTTTAGTCTTTTCATTAATTTTGGAAACACATATAGACACTAGTAGGATTATTGCTATTGGGTTTGCTAGGGATTAATTTGTACTTAAGCTTTCTGTGAGACAATCTTTTGACAACCTCCCGTGTCATAAATGCAGATTGAGAAATTGAGAACTTGATCAGCAAATTTTATTTTATCTTGGACATTAATGTAATTTCATTTTGTTGTTACCAGTCCTGCAATCTCTTTAACAACCTTGGATGAGTAGATAAATGTGTCTATTTTAGAGAAAACAAATGAAGTTTCTGCTGCTAACTTTGAGGATCCTGTATAGCGTGACTTAGCACCAGTGGCAGTGTCATCTTTGTTCAAGCGAAGTCAATTGACACTACTTCGTAAAATTCCAAAACGTAGATAGGTCAATCTTTCTAAATGTATACATTGAATCTCCTTGGCTTCTTCATCTTTTTTTGAATATATATTTTGAATCTCCTTAGCAAAAATCCAGTTATTTTAGTTCTGCCACTGTTTAGCACTACTTTGGGTTATTTGAATAAGCCTTTCGGTCTAAGTAATAATTACTCATCTACAAAAATTGGAAGTGGTCTTTTGTTTAAGCACTGGTGTTGAAATCTCTTGGTATGTACTGAATAGCAACCAATAACTTTGGTCTTCATACAGATTATTGCTTCTTTTTTTTTTTTTTTAATGAAAACGACCTCAAAGAGGCAATTGATATTTGCAGTGGTCTCCTTACAGCTATCCCCTTGTTAGAAAATGATCCATTGAATCTCATGTTGAGATACACATTTAGAAGAAAAAAATATAATATCATCTGAGATTTGGATATGCAAGTAATTTGATAATCAACTAGCTTTTTAGTTTTCTAAAATGATAGTAATATACTAGATCAATTTCTTCTTAGAATGAATACATTATATATTATCTCGCATGCCTAGAAGTTCGACAATGGTGTTTTATACTGAAAACTGAGGTGTTAACTCCCGAAGGTTGAGATCTGATGTACTTGCAGTGATGGTACAATAACAAGGGATCAATGGAGGTGGTAGTGATTTCCAGGGAAAAAATATAATCACGGTGGTTGCTTCTTCTTTGTTGGTCGTATGGAATCTGTGTTCACTTTTCAGTCTTCAGTCATCTGTTGCTGACTCTTAAGAGTAGCATGCACAATGTTGATGACTGTTGGACTTATTAAAGGAATGAGTTTTGTCAACTAGGAGATACTCCCTCCTTTTCAATTTGTTTGTCTGGTTTTGACTTGGTACAAAGGTAAGAAAGTGACGAGACTTTTGAATCTTGTGGTGTTAAACATGTCGTGTGGAGTTGCAAAAAAGGGAACGAGGCATTTTTTTTTGAAACGGACTAAAAAGGAAAGTAAGACAAACAAGTTGAATCGGAGGGAGTAGTAATTACTAAGAACGAGCTCTGATATGCTTTGCAGCTTCTAGGTCACTCACATAAGAATTATCAAGTAGTTGCTTTGTGTGTGGTTTTTATGAAAATTGTAGTGCTTGGCGATATATTGGTGATTCTTCAAGTTAAATTTAGGTGCTTTCAACGGGAGCTAATCCAAGGTATTTCTTGATCTTTTTTCTCTTGCAGCATGACTGTCATTTTCTTTGCAAAAGAAGGTGAAGATTGTTGTTTGACTCCCATGAAGGAAAGCTTGCTTCCACCAGTAACTTTTGAGTTTCAAAAAGGTTTAGCTCAGAAATTTAGGCAACCGTCTGGTACTGGCATTGATTTTTCAATGTTTGAAGAGGCAGAATTGTCCAAAGATAGTGAGGCAGATGTGTATCCACTTGCAGTCAAGGCGGAGGCAACATTAGATAACCCAAGTGAATCAGAGGATGGAAGTGCAGCATCAGGATCCACTAATTCACAGATCACTCAAGCAGTTTTTGAGAAGGACAAAGGTGAGTACCATGTTAGGGCGGTGAAGCAGATCCTGTGGGTCAATGACATGAGGTATGAATTGCAAGAGATTTTTGGGATTGGTAATTCAGTTGAAAGTGACTTCGATGGAAATGATCCCGGAAAAGAATGTGTGATTTGCCTCTCTGAACCTCGGGATACCACTGTACTTCCATGTCGGCACATGGTATGATTCTGCCCTTTGTTAACAATTTATGTCGAGTTTTGGTCTCAATATGTTCCCAAACGTCTGCAATGTCATGATTATACGTAGTACAGAATTTATGCATTCTGCAGTTCAACAGTTTTGCTTATAGAATCTGAAAACAATTCCTTCCGACACTTCAAGTCTTCCTAGGGTGTGTTTGGTATGGAGGAAAAAATGTTTTCCAGTTTTTAAATGTTCAGTTGGTTAAAATTTTGAAAAAAAATTTCTCTAGGAAAACAAGTATTTTTTAAAATGAAGAAAATGACTTCCCTAGAGAAAGAAGGGGAAAGATGTTCCACAGGTGGTGTCCTTGCCACCCTCTAACATACATCATCTTCACCCACACCCCCTGTAGCCTCTATCCCCGCCACCCCACGCCCTTACCTCTACTCCTATCTTCCATTATATTGGTTCAGGTGATATACAAATGCTTTAAGGATAATATTTTCTGCTTATTTTCCTGGGAAACATTTTCCTTCCTACCGACCACACCCTTAAAGTCCACTGTTTTCCCTCTTCTTTGCTGTGTGACCTCTCCTTAGCACACCTCACACTTTCTCTTGCCACTGGCTGAGTGATTTAAGATTTTAGTAAAATTGATATTCTGAAGCAGACTTCGTTTTAAGCTTCATTTTCACTGCAGACATTTATTGATTGAACAAGCCATTTATAAAATACCTGTTTCTGGATTAGGACGTGTCTCTCTCTATTGGGCGGAGATCCGAAAGGAGCTACCACATCTTACCTTGAATTAAAATACTTCTGCTCAACTTCCCATCGAGGAAGCACCAACCCGTTTTTCACCTTGAATTGATCAAACCATGCTGAATTTCTTATGTTTCGCGGAGGGATTAGACCCTGCATTTCTTTTAGTTGACAAAACTCTAATATAATGTACATTACATAACTCAGTGTCTTTCTTCACGCAGTGTATGTGTAGCGGATGTGCAAAGGTTTTGAGGTTCCAGACGAATCGCTGTCCCATCTGTCGACAGCCAGTTGAACGCCTCCTGGAGATCAAGGTCAGCGAAGGCGCAGCTGAAGAGTAAAAATAGGAAGAGTTGCCATAATCCACTCTTGTATAAATATCAGTATTTCTCTTTCTTGACCTTTTGGTTTTCCTTCTCTATCCATCCCCCCTAGAGTAGAATAATCCAACAGCTGAAAGTCTCTTAGTTATAGTTTGCCA</genome_strand>
        <mrna_strand>AGACTCTAAGGATTGAGCCTGATGAAGCTAATCCTGGCAAGTATCTTGTGGCCTTCACTTTTGATGCCACAGTTCCTGGGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGACTGTCATTTTCTTTGCAAAAGAAGGTGAAGATTGTTGTTTGACTCCCATGAAGGAAAGCTTGCTTCCACCAGTAACTTTTGAGTTTCAAAAAGGTTTAGCTCAGAAATTTAGGCAACCGTCTGGTACTGGCATTGATTTTTCAATGTTTGAAGAGGCAGAATTGTCCAAAGATAGTGAGGCAGATGTGTATCCACTTGCAGTCAAGGCGGAGGCAACATTAGATAACCCAAGTGAATCAGAGGATGGAAGTGCAGCATCAGGATCCACTAATTCACAGATCACTCAAGCAGTTTTTGAGAAGGACAAAGGTGAGTACCATGTTAGGGTGGTGAAGCAGATCCTGTGGGTCAATGACATGAGGTATGAATTGCAAGAGATTTTTGGGATTGGTAATTCAGTTGAAAGTGACTTCGATGGAAATGATCCCGGAAAAGAATGTGTGATTTGCCTCTCTGAACCTCGGGATACCACTGTACTTCCATGTCGGCACATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATGTGTAGCGGATGTGCAAAGGTTTTGAGGTTCCAGACGAATCGCTGTCCCATCTGTCGACAGCCAGTTGAACGCCTCCTGGAGATCAAGGTCAGCGAAGGCGCAGCTGAAGAGTAAAAATAGGAAGAGTTGCCATAATCCACTCTTGTATAAATATCAGTATTTCTCTTTCTTGACCTTTTGGTTTTCCTTCTCTATCCAT-CCCCCTAGAGTAGAATAATCCAACAGCTGAAAGTCTCTTAGNTATAGTTTGCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E396218" ref_strand="+" ref_description="SGN-E396218 [TUS-24-P12]">
      <seq>tttcttaaaggtttagctcagaaatttaggcaaccgtctggtactggcattgatttttcaatgtttgaagaggcagaattgtccaaagatagtgaggcagatgtgtatccacttgcagtcaaggcggaggcaacattagataacccaagtgaatcagaggatggaagtgcagcatcaggatccactaattcacagatcactcaagcagtttttgagaaggacaaaggtgagtaccatgttagggcgctgaaacagatcctgtgggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="+" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="49864" stop="50729"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50164" g_stop="50429" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="266" r_length="266" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="+" ref_id="SGN-E396218" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>266</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E396218" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50164" e_stop="50429"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAAAAAGGTTTAGCTCAGAAATTTAGGCAACCGTCTGGTACTGGCATTGATTTTTCAATGTTTGAAGAGGCAGAATTGTCCAAAGATAGTGAGGCAGATGTGTATCCACTTGCAGTCAAGGCGGAGGCAACATTAGATAACCCAAGTGAATCAGAGGATGGAAGTGCAGCATCAGGATCCACTAATTCACAGATCACTCAAGCAGTTTTTGAGAAGGACAAAGGTGAGTACCATGTTAGGGCGGTGAAGCAGATCCTGTGGGT</genome_strand>
        <mrna_strand>TTTCTTAAAGGTTTAGCTCAGAAATTTAGGCAACCGTCTGGTACTGGCATTGATTTTTCAATGTTTGAAGAGGCAGAATTGTCCAAAGATAGTGAGGCAGATGTGTATCCACTTGCAGTCAAGGCGGAGGCAACATTAGATAACCCAAGTGAATCAGAGGATGGAAGTGCAGCATCAGGATCCACTAATTCACAGATCACTCAAGCAGTTTTTGAGAAGGACAAAGGTGAGTACCATGTTAGGGCGCTGAAACAGATCCTGTGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E247226" ref_strand="+" ref_description="SGN-E247226 [cLEF-46-D13]">
      <seq>ttcaaaaaggtttagctcataaatttaagcaaccgtctggtactggcattgatttttcaatgtttgaagaggcagaattgtccaaagatagtgaggcagatgtgtatccacttgcagtcaaggcggaggcaacattagataacccaagtgaatcagaggatggaagtgcagcatcaggatccactaattcacagatcactcaagcagtttttgagaaggacaaaggtgagtaccatgttagggcggtgaagcagatcctgtgggtcaatgacatgaggtatgaattgcaagagatttttgggattggtaattcagttgaaagtgacttcgatggaaatgatcccggaaaagaatgtgtgatttgcctctctgaacctcgggataccactgtacttccatgtcggcacatgtgtatgtgtagcggatgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="+" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="49865" stop="51843"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50165" g_stop="50574" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="410" r_length="410" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50575" i_stop="51524" i_length="950">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51525" g_stop="51543" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="429" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="+" ref_id="SGN-E247226" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247226" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50165" e_stop="50574"/>
          <exon e_start="51525" e_stop="51543"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAAAAGGTTTAGCTCAGAAATTTAGGCAACCGTCTGGTACTGGCATTGATTTTTCAATGTTTGAAGAGGCAGAATTGTCCAAAGATAGTGAGGCAGATGTGTATCCACTTGCAGTCAAGGCGGAGGCAACATTAGATAACCCAAGTGAATCAGAGGATGGAAGTGCAGCATCAGGATCCACTAATTCACAGATCACTCAAGCAGTTTTTGAGAAGGACAAAGGTGAGTACCATGTTAGGGCGGTGAAGCAGATCCTGTGGGTCAATGACATGAGGTATGAATTGCAAGAGATTTTTGGGATTGGTAATTCAGTTGAAAGTGACTTCGATGGAAATGATCCCGGAAAAGAATGTGTGATTTGCCTCTCTGAACCTCGGGATACCACTGTACTTCCATGTCGGCACATGGTATGATTCTGCCCTTTGTTAACAATTTATGTCGAGTTTTGGTCTCAATATGTTCCCAAACGTCTGCAATGTCATGATTATACGTAGTACAGAATTTATGCATTCTGCAGTTCAACAGTTTTGCTTATAGAATCTGAAAACAATTCCTTCCGACACTTCAAGTCTTCCTAGGGTGTGTTTGGTATGGAGGAAAAAATGTTTTCCAGTTTTTAAATGTTCAGTTGGTTAAAATTTTGAAAAAAAATTTCTCTAGGAAAACAAGTATTTTTTAAAATGAAGAAAATGACTTCCCTAGAGAAAGAAGGGGAAAGATGTTCCACAGGTGGTGTCCTTGCCACCCTCTAACATACATCATCTTCACCCACACCCCCTGTAGCCTCTATCCCCGCCACCCCACGCCCTTACCTCTACTCCTATCTTCCATTATATTGGTTCAGGTGATATACAAATGCTTTAAGGATAATATTTTCTGCTTATTTTCCTGGGAAACATTTTCCTTCCTACCGACCACACCCTTAAAGTCCACTGTTTTCCCTCTTCTTTGCTGTGTGACCTCTCCTTAGCACACCTCACACTTTCTCTTGCCACTGGCTGAGTGATTTAAGATTTTAGTAAAATTGATATTCTGAAGCAGACTTCGTTTTAAGCTTCATTTTCACTGCAGACATTTATTGATTGAACAAGCCATTTATAAAATACCTGTTTCTGGATTAGGACGTGTCTCTCTCTATTGGGCGGAGATCCGAAAGGAGCTACCACATCTTACCTTGAATTAAAATACTTCTGCTCAACTTCCCATCGAGGAAGCACCAACCCGTTTTTCACCTTGAATTGATCAAACCATGCTGAATTTCTTATGTTTCGCGGAGGGATTAGACCCTGCATTTCTTTTAGTTGACAAAACTCTAATATAATGTACATTACATAACTCAGTGTCTTTCTTCACGCAGTGTATGTGTAGCGGATGTG</genome_strand>
        <mrna_strand>TTCAAAAAGGTTTAGCTCATAAATTTAAGCAACCGTCTGGTACTGGCATTGATTTTTCAATGTTTGAAGAGGCAGAATTGTCCAAAGATAGTGAGGCAGATGTGTATCCACTTGCAGTCAAGGCGGAGGCAACATTAGATAACCCAAGTGAATCAGAGGATGGAAGTGCAGCATCAGGATCCACTAATTCACAGATCACTCAAGCAGTTTTTGAGAAGGACAAAGGTGAGTACCATGTTAGGGCGGTGAAGCAGATCCTGTGGGTCAATGACATGAGGTATGAATTGCAAGAGATTTTTGGGATTGGTAATTCAGTTGAAAGTGACTTCGATGGAAATGATCCCGGAAAAGAATGTGTGATTTGCCTCTCTGAACCTCGGGATACCACTGTACTTCCATGTCGGCACATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATGTGTAGCGGATGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E699869" ref_strand="+" ref_description="SGN-E699869 [FA11BG07]">
      <seq>atggaaatgatcccggaaaagaatgtgtgatttgcctctctgaacctcgggataccactgtacttccatgtcggcacatgtgtatgtgtagcggatgtgcaaaggttttgaggttccagacgaatcgctgtcccatctgtcgacagccagttgaacgcctcctggagatcaaggtcagcgaaggcgcagctgaagagtaaaaataggaagagttgccataatccactcttgtataaatatcagtatttctctttcttgaccttttggttttccttctctatccatccccctagagtagaataatccaacagctgaaagtctcttagttatagtttgccattgggttgccagtcctacaaatggatcatcgagacatgctgttgagctaagcccccttttttacttttttttttccttttaaagagtgtttttgaattccatgcattttttttaaaaagttgttataactatacctagtaaatattctgtttgctttgataaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaataggggggggggagaaaaacctttcgggggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="+" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="50195" stop="80700"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50495" g_stop="50574" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50575" i_stop="51524" i_length="950">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51525" g_stop="51931" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="497" r_length="417" r_score="0.939"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51932" i_stop="52667" i_length="736">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.218" a_score="0.61"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52668" g_stop="52711" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="541" r_length="44" r_score="0.614"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52712" i_stop="57312" i_length="4601">
            <donor d_prob="0.000" d_score="0.61"/>
            <acceptor a_prob="0.000" a_score="0.56"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57313" g_stop="57357" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="586" r_length="45" r_score="0.556"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="+" ref_id="SGN-E699869" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699869" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50495" e_stop="50574"/>
          <exon e_start="51525" e_stop="51931"/>
          <exon e_start="52668" e_stop="52711"/>
          <exon e_start="57313" e_stop="57357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGAAATGATCCCGGAAAAGAATGTGTGATTTGCCTCTCTGAACCTCGGGATACCACTGTACTTCCATGTCGGCACATGGTATGATTCTGCCCTTTGTTAACAATTTATGTCGAGTTTTGGTCTCAATATGTTCCCAAACGTCTGCAATGTCATGATTATACGTAGTACAGAATTTATGCATTCTGCAGTTCAACAGTTTTGCTTATAGAATCTGAAAACAATTCCTTCCGACACTTCAAGTCTTCCTAGGGTGTGTTTGGTATGGAGGAAAAAATGTTTTCCAGTTTTTAAATGTTCAGTTGGTTAAAATTTTGAAAAAAAATTTCTCTAGGAAAACAAGTATTTTTTAAAATGAAGAAAATGACTTCCCTAGAGAAAGAAGGGGAAAGATGTTCCACAGGTGGTGTCCTTGCCACCCTCTAACATACATCATCTTCACCCACACCCCCTGTAGCCTCTATCCCCGCCACCCCACGCCCTTACCTCTACTCCTATCTTCCATTATATTGGTTCAGGTGATATACAAATGCTTTAAGGATAATATTTTCTGCTTATTTTCCTGGGAAACATTTTCCTTCCTACCGACCACACCCTTAAAGTCCACTGTTTTCCCTCTTCTTTGCTGTGTGACCTCTCCTTAGCACACCTCACACTTTCTCTTGCCACTGGCTGAGTGATTTAAGATTTTAGTAAAATTGATATTCTGAAGCAGACTTCGTTTTAAGCTTCATTTTCACTGCAGACATTTATTGATTGAACAAGCCATTTATAAAATACCTGTTTCTGGATTAGGACGTGTCTCTCTCTATTGGGCGGAGATCCGAAAGGAGCTACCACATCTTACCTTGAATTAAAATACTTCTGCTCAACTTCCCATCGAGGAAGCACCAACCCGTTTTTCACCTTGAATTGATCAAACCATGCTGAATTTCTTATGTTTCGCGGAGGGATTAGACCCTGCATTTCTTTTAGTTGACAAAACTCTAATATAATGTACATTACATAACTCAGTGTCTTTCTTCACGCAGTGTATGTGTAGCGGATGTGCAAAGGTTTTGAGGTTCCAGACGAATCGCTGTCCCATCTGTCGACAGCCAGTTGAACGCCTCCTGGAGATCAAGGTCAGCGAAGGCGCAGCTGAAGAGTAAAAATAGGAAGAGTTGCCATAATCCACTCTTGTATAAATATCAGTATTTCTCTTTCTTGACCTTTTGGTTTTCCTTCTCTATCCATCCCCCCTAGAGTAGAATAATCCAACAGCTGAAAGTCTCTTAGTTATAGTTTGCCA----G-T-CC--T---ACAAATGGATCATCGAGACATGCTGTTGAGCTAAGCCCCCTTTTTTACTTTTTTTTTTCCTTTTAAAGAGTGTTTTTGAATTCCATGCATTTTTTTAAAGAAGTTGTTATAACTATACCTAGTAAATATTCTGTTTGCTTTGATAACACTTTTTTTGAGCTTAGGGTCTATTCGTAACTGTTTTTTTTTTTTTTTTACTTTCATAAGGTAGGAACAAGGTTGTGTACACCACTTGTCTCGAGCTCTACTGAGTTTTGGTCTAGTTGGAGGAGCGCAACAAGTGTGTTTTGGTGATTAGATGCACGTTTAGTCTCATGATACTGAATTTATTGAAACTTGGTATTTTCAATATGGAGCATAAATTTATATTAAAAGTCAACTACAATTACATCAAGTAATAAATGTGAATTCGTAACTTTAGATATATTTGCTTAAAGCTAAGAACATCAAACACAACATGAATTTATGATAAGTTTTTTTTCCGTTGTGATAAATTGTACTAGAGAAAAATGTGGCTTTTGGGATGCAGAACTCAATAAGACACTATACTGTTCATTCAACAACCTACCTCGCATATCATGTGTTGAGGTCCCTAGCCTATAACGAAAAGACAAGTTCAATGAACACTACAATATCTTGTTGAGTTTTATATCCCGAAAGTCCTATCTTTCTCTTGTAGAATTCATCGCAACATAAATTTGTGATAACTTTTTTTTATTGTTGTGATGAATTGTACAAGAGAAAGATCGGACTTTTAGAATGCAGAACTCAACAAGACACTATACTGTTCATTCCACTTGTCTTTTAGTCATAGAAAAGGAACCTCAACACATGATATGCGAGGTTGATCTACGTCACAAATTTGAATCATATTGTAGATAAAAGTTTAATATTAAAGTAGAGAAAAATATAAAAGGACAATGTGTTATCTTCTTCCTTCGGGTTAAGGTTTCGAATATGCAACAGAACAATAAATTTTTGAGAAATTTCTTCTCCTTTTTTTGGGGGGACTTTTAAAATCTAATCAATTCCAGAAAATTTTAAATTTGATATCTAATATATTAAGCACATCTCATCAATTTTTAATAATTATATTCAACATAGACTTCAAAATTTTTTTTACAAGAACATGTACAATTTCATCAAAAGAAGAAAAATATAGAGGAATTAAATTTCAATTAGTCAATAAATCAATACTCATATTAAGTTCTTTATGTTCTATATTTGCTTTTTATATTAAGGCACTTTGAGTTAAAACATCATGCCCTAACAATTATTTTTGCTTTTTAAGCATGACTAAAATTTAAAAATCTATTCTCCAATAAAAATTTTCCACCATATAATAACTCATGTACATTTTTTCTAATAACACAAATCCTAAAAAAATTATAAAAATCCTACATTAACCAATGATTTTCTCCACTAACATTTCTATTTATTGGGCTCAAAAATTCAAATGTCCCCATTATTGTCAAAGAATGATTGATGTCCAATGATTCAAATCTTTTACAAATTTTATTCTTAATATTTTTCATAATATCCAAAATATTTTTAAAAAAATATAATCAATTATCTATTTATATTTTTAAAAAATAGCTTTAGGATATGAATTAATTCATTTTAGCAAAAAAGAAAAAGTATTAATCAACACTTTTTTATCAAAACAAACAAACTAATTATTGTTTAGTTTCAATTTTTAATAATTCAATTCAACTTCACAATTTCTTAATTATAATTTCTATTTTCATCATCAAGCTAATTCAACTCTTACTCACATGTCATGGATTGTGAACTAATTATTTTATCTCAACTTGCAATTCTTTTAATTATATATCATATTTAATTTAATCTTGTCATTAAAAAAACAAACAAAGATAAAGATATAAACAATTTTTATTTTATTTTTACTCTTCATTGTACAATTAATTGTTAGATTACAAGTGGTGTATAATAAGCCAAGATAATTAATTAAAGTTGTGACCATCAATAGAGGGTATATGTGAGTATCTCTACTTTTGGGTTTGGAAATAAATAAATCTTATATCTTTTTTAAGTTTATAATTGACTATATTTGTTTGGTGAATGGTCCCTTTATTAGACTACATCAATGATATCATTCATGATTATTATAATTTTTTTTTTTTTGAAAAAAAAAATTTAGTAGTGTCCTCTAAATTTTGTGAATTTTGCAACTAGTTAAAGAAGTCAACCTTTGCCACATAATGATTGTTTTAGTGGTCTTATGATCGAGACGATATTGATCTCAAAATTTACATAGTGATCAATTCTAAATTGAGCTTTTAGTGAAAAATTAAAACGCTTATTTCATAAAGTTCTTTTCGTCCTAAGAAAAAATGATGTATGATAGGACAATATCTTCAAATGCGTTTCACACTATGAAAACCATATTTTACTTTGAAATAAAAGATGTGTGTCCATTATGTACATATATATATATATATATATATATATATATATATATATATATATATATTATATAGTTCTTTAATTAAAGATATAAAAGATGTACTTCCTCCGTTCGGTATTGTTTGTTATGTTTTCTATTTTTAGAGTCAAATTATAAAAATTTTGACTAACATTTTAAGATACATTTTTTCATCATATTAATTTGCAAAAAAATTGTAATTTATAGTACTTTTCATTTAGTTTCAGAATATCTATTTTTTTTGTTAAAAATATCGAATTAATGTGATCTAATTTACCTTTGAAAATTAGTCAAATTGACTTTTGATATGCAACATGACAAATATTTCTGAACGGAGAGAGTAGTGTTGAATGCCTTGAATCGGACCCGCTACAAACAGAAAGGACGGGGGTCTTAGCACTATATATAGACGCTATGGGAAACCCTATTCTGTAATTCTGTTTTTGCCTCTCCATAATAAAACTGCTCCCTCTCTTCCCGTGGACGTAGCCAATTTATTGGTGAACCACGTAAATCTGTTGTCTTGTTTTTTCGCGTTTATATTTTCTCGTATTATCTCAAATTCCGCACAACAAATTGGTATCAGAGCCTCTCGGTTAATCGGTGTTCTTGGAGAATTCGAGATGTCTGCTTTGAACGTGAAAATCGACAAATTCACAGGGAGGAACAGTTTCAGTTTATGGCAGATCAAGATGCGGGCCTTGTTGAAACAGCAAGGCTTCTGGGCGCCGTTGTCGAAAGACAAGAACGCCGTCGTTACTCCTGAGATGGCGATTCTGGAGGAAAAGGCGCACTCGACGATCATGCTGTGTCTCGCGGATGATGTCATCACGGAGGTCTCGGATGAAGAGACTGCTGCTGGTCTGTGGTTGAAGCTGGAGAGTTTGTACATGACAAAATCTCTAACCAACAAGCTGCTTCTGAAACAACGTCTATTCGGTTTACGAATGGCTGAAGGTACACAACTCAGGGAACACTTAGAGCAATTGAATACTTTGCTATTAGAATTGCGTAATATCGATGTGAAGATCGAGGATGAAGATGCTGCCCTGATTCTGTTAGTATCTCTCCCAATGTCGTTTGAGAATTTTGTTCAATCGTTCATTGTTGGGAAAGATACTGTGTCACTGGAAGAAGTCAGATCGGCCCTTCATAGCAGGGAATTACGGCATAAGGCTAACGGCACAAGTACGGACATACAGCCTTCCGGTCTGTTCACCAGTAGCGGAAAGGGAAGGAAAAACGGCGGAAAGAAAAATAAGCCGATGTCGAAGGGTGCAAAGCCGGATGATGTTTGTAATTACTGCAAGGAGAAGGGACATTGAAAATTTGATTGTCCGAAGAAGAAGAAGCAATCGGAAAAACAATCAGTGTCTGCTGCTGTTGCTGAAGAAGACACCAATTCTGAAGAAGATATTGCCCTAGTTGCGGATGAGCACACTCATTATTCAGATGTGTGGGTTCTTGATTCTGGGGCATCCTATCACATCTGTCCTAGGAGAGAGTGGTTCACGACTTATGAGCAGGTAGACGGCGGCAGCATCTCGATGGCCAACAGTTCTGTCTGCAAGGTGGTTGGGACAGGCTCGATCAAGATAAGGACACATGATGGTAGCTTCTGCACATTGAACGAGGTCAGGCACGTTCCATTGATGACGAAAAATCTGATATCTCTCAGTCTTTTGGACAGCAAGGGATTCAGCTGGTCGGGAAAAGATGGAGTCTTGCGGGTCTGGAAGGGTTCAAATTTGATTCTGAAAGGTGTCATGCGTGGTACTTTGTATTTTCTACAAGGTTCCACGGTTACAGGTTCAGCCCATGTTGCATCGTCAGAATTTCACCAGAAGGATATGACTAAGTTATGGCACATGAGACTTGGTCATATGGGTGAAAGAGGGATGCAAATTCTGTCAAAGGAGGATTTACTTGCTGGTCATAAGGTTAAGAGCCTAGAGTTTTGTGAACATTGTGTTTTTGGAAAACTACATCGCAACAAGTTTCCAAAGGCCATTCATAGAACAAAAGGCACACTTGATTATATCCATTCTGATTGCTGGGGTCCATGCCGTGTTGAGTCTTTGGGAGGCTGCAGATTTTTTGTGTCCATTATTGATGACTACTCAAGGATGACTTGGGTGTACATGATGAAGCATAAAAGTGAAGCCTTCCAGAAGTTCAAGGAGTGGAAAATTTTGATGGAAAATCAAACAGGGAAGAAGATCAAGAGGTTGCGAACTGATAATGGGCTGGAATTCTGTTGGTCTGAATTTGATCAATTCTGTAAGGATGAAGGGATTGCTCGACATCGTACAGTCAGAAATACACCACAGCAGAACGGTGTAGCTGAGCGGATGAATCAAACACTTCTGGAGAGAGCAAGGTGCATGCTCTCTAATGCTGGGCTAGATAGAAGATTCTGGGCAGAAGCGGTTAGTACAACTTGCTACTTGATTAACCGCGGACCACATACAGGCATACAGTGCAAGACACCTATGGAGATGTGGTCAGGAAAAGCTGCTGATTATTCAAATCTGAAAGCTTTTGGTTGTACGGCTTACTATCACGTCAGTGAAGGTAAGTTAGAACCAAGAGCTAAAAAGGGAGTATTTGTGGGCTACGGAGATGGAGTGAAAGGTTTCAGAATCTGGTCTCCAGCAGAAAAGAGGGTTATTATGAGCAGGAACGTTGTCTTTGATGAAAGTCCTCTGCTTAGAACCATTGTGAAGCCTATAACTACGTCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCAAAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAG</genome_strand>
        <mrna_strand>ATGGAAATGATCCCGGAAAAGAATGTGTGATTTGCCTCTCTGAACCTCGGGATACCACTGTACTTCCATGTCGGCACATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATGTGTAGCGGATGTGCAAAGGTTTTGAGGTTCCAGACGAATCGCTGTCCCATCTGTCGACAGCCAGTTGAACGCCTCCTGGAGATCAAGGTCAGCGAAGGCGCAGCTGAAGAGTAAAAATAGGAAGAGTTGCCATAATCCACTCTTGTATAAATATCAGTATTTCTCTTTCTTGACCTTTTGGTTTTCCTTCTCTATCCAT-CCCCCTAGAGTAGAATAATCCAACAGCTGAAAGTCTCTTAGTTATAGTTTGCCATTGGGTTGCCAGTCCTACAAATGGATCATCGAGACATGCTGTTGAGCTAAGCCCCCTTTTTTACTTTTTTTTTTCCTTTTAAAGAGTGTTTTTGAATTCCATGCATTTTTTTTAAAAAGTTGTTATAACTATACCTAGTAAATATTCTGTTTGCTTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAATAGGGGGGGGGGAGAAAAACCTTTCGGGGGGGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E396217" ref_strand="+" ref_description="SGN-E396217 [TUS-24-P12](-)">
      <seq>ggaaaagaatgtgtgatttgcctttttgaacctcgggataccactgtacctccccctcggcacatgtgtatgtgtagcggatgtgcaaaggttttgaggttccagacgaatcgctgtcccatttgtcgacagccagttgaacgcctcctggagatcaaggtcagcgaaggcgcagctgaagagtaaaaataggaagagttgccataatccactcttgtataaatatcagtatttttctttcttgaccttttggttttccttctctatccatcccccctagagtagaataatccaacagctgaaagttttttagttatagtttgccagtcctacaaatggatcatcgagacatgctgttgagctaagcccccttttttacttttttttttccttttaaagagtgtttttgaattccatgcatttttttaaagaagttgttataactatacctagtaaatattctgtttgctttgataacactttttttgagcttagggtctattcgtaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="+" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="50209" stop="52266"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50509" g_stop="50574" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50575" i_stop="51524" i_length="950">
            <donor d_prob="0.996" d_score="0.88"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51525" g_stop="51962" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="504" r_length="438" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="507" polyA_stop="522"/>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="+" ref_id="SGN-E396217" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E396217" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50509" e_stop="50574"/>
          <exon e_start="51525" e_stop="51962"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAAGAATGTGTGATTTGCCTCTCTGAACCTCGGGATACCACTGTACTTCCATGTCGGCACATGGTATGATTCTGCCCTTTGTTAACAATTTATGTCGAGTTTTGGTCTCAATATGTTCCCAAACGTCTGCAATGTCATGATTATACGTAGTACAGAATTTATGCATTCTGCAGTTCAACAGTTTTGCTTATAGAATCTGAAAACAATTCCTTCCGACACTTCAAGTCTTCCTAGGGTGTGTTTGGTATGGAGGAAAAAATGTTTTCCAGTTTTTAAATGTTCAGTTGGTTAAAATTTTGAAAAAAAATTTCTCTAGGAAAACAAGTATTTTTTAAAATGAAGAAAATGACTTCCCTAGAGAAAGAAGGGGAAAGATGTTCCACAGGTGGTGTCCTTGCCACCCTCTAACATACATCATCTTCACCCACACCCCCTGTAGCCTCTATCCCCGCCACCCCACGCCCTTACCTCTACTCCTATCTTCCATTATATTGGTTCAGGTGATATACAAATGCTTTAAGGATAATATTTTCTGCTTATTTTCCTGGGAAACATTTTCCTTCCTACCGACCACACCCTTAAAGTCCACTGTTTTCCCTCTTCTTTGCTGTGTGACCTCTCCTTAGCACACCTCACACTTTCTCTTGCCACTGGCTGAGTGATTTAAGATTTTAGTAAAATTGATATTCTGAAGCAGACTTCGTTTTAAGCTTCATTTTCACTGCAGACATTTATTGATTGAACAAGCCATTTATAAAATACCTGTTTCTGGATTAGGACGTGTCTCTCTCTATTGGGCGGAGATCCGAAAGGAGCTACCACATCTTACCTTGAATTAAAATACTTCTGCTCAACTTCCCATCGAGGAAGCACCAACCCGTTTTTCACCTTGAATTGATCAAACCATGCTGAATTTCTTATGTTTCGCGGAGGGATTAGACCCTGCATTTCTTTTAGTTGACAAAACTCTAATATAATGTACATTACATAACTCAGTGTCTTTCTTCACGCAGTGTATGTGTAGCGGATGTGCAAAGGTTTTGAGGTTCCAGACGAATCGCTGTCCCATCTGTCGACAGCCAGTTGAACGCCTCCTGGAGATCAAGGTCAGCGAAGGCGCAGCTGAAGAGTAAAAATAGGAAGAGTTGCCATAATCCACTCTTGTATAAATATCAGTATTTCTCTTTCTTGACCTTTTGGTTTTCCTTCTCTATCCATCCCCCCTAGAGTAGAATAATCCAACAGCTGAAAGTCTCTTAGTTATAGTTTGCCAGTCCTACAAATGGATCATCGAGACATGCTGTTGAGCTAAGCCCCCTTTTTTACTTTTTTTTTTCCTTTTAAAGAGTGTTTTTGAATTCCATGCATTTTTTTAAAGAAGTTGTTATAACTATACCTAGTAAATATTCTGTTTGCTTTGATAACACTTTTTTTGAGCTTAGGGTCTATTC</genome_strand>
        <mrna_strand>GGAAAAGAATGTGTGATTTGCCTTTTTGAACCTCGGGATACCACTGTACCTCCCCCTCGGCACATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATGTGTAGCGGATGTGCAAAGGTTTTGAGGTTCCAGACGAATCGCTGTCCCATTTGTCGACAGCCAGTTGAACGCCTCCTGGAGATCAAGGTCAGCGAAGGCGCAGCTGAAGAGTAAAAATAGGAAGAGTTGCCATAATCCACTCTTGTATAAATATCAGTATTTTTCTTTCTTGACCTTTTGGTTTTCCTTCTCTATCCATCCCCCCTAGAGTAGAATAATCCAACAGCTGAAAGTTTTTTAGTTATAGTTTGCCAGTCCTACAAATGGATCATCGAGACATGCTGTTGAGCTAAGCCCCCTTTTTTACTTTTTTTTTTCCTTTTAAAGAGTGTTTTTGAATTCCATGCATTTTTTTAAAGAAGTTGTTATAACTATACCTAGTAAATATTCTGTTTGCTTTGATAACACTTTTTTTGAGCTTAGGGTCTATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E395715" ref_strand="+" ref_description="SGN-E395715 [TUS-17-O12](-)">
      <seq>gtgtagcggatgtgcaaaggttttgaggttccagaggaatcgctgtcccatctgttgacagccagttgaacgcctcttggagatcaaggtcagcgaaggcgcagatgaagagtaaaaataggaagagttgccataatccacttttgtataaatatcagtatttttcttttttgaccttttggttttccttctttatccatcccccctagagtagaataatccaacagctgaaagtttattagttatagtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="+" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="51230" stop="52081"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51530" g_stop="51781" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="252" r_length="252" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="+" ref_id="SGN-E395715" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>252</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E395715" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51530" e_stop="51781"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTAGCGGATGTGCAAAGGTTTTGAGGTTCCAGACGAATCGCTGTCCCATCTGTCGACAGCCAGTTGAACGCCTCCTGGAGATCAAGGTCAGCGAAGGCGCAGCTGAAGAGTAAAAATAGGAAGAGTTGCCATAATCCACTCTTGTATAAATATCAGTATTTCTCTTTCTTGACCTTTTGGTTTTCCTTCTCTATCCATCCCCCCTAGAGTAGAATAATCCAACAGCTGAAAGTCTCTTAGTTATAGTTTG</genome_strand>
        <mrna_strand>GTGTAGCGGATGTGCAAAGGTTTTGAGGTTCCAGAGGAATCGCTGTCCCATCTGTTGACAGCCAGTTGAACGCCTCTTGGAGATCAAGGTCAGCGAAGGCGCAGATGAAGAGTAAAAATAGGAAGAGTTGCCATAATCCACTTTTGTATAAATATCAGTATTTTTCTTTTTTGACCTTTTGGTTTTCCTTCTTTATCCATCCCCCCTAGAGTAGAATAATCCAACAGCTGAAAGTTTATTAGTTATAGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E539761" ref_strand="+" ref_description="SGN-E539761 [TUS-59-K24]">
      <seq>tacgtcagaaactaggagtcttgacaaacaggtggagtttcaagtcattcagaacgagagcgatttaaaggaacctgaagaggaggatcaagagccacagactgaaactgatattccagaatctatgccatcagatatccatcagagtatagctcaagatcggccaaggagggttggagttcggccacctacgaggtatggttttgaggacatggtgggttatgcactgcaggttgctgaagaggtagatacatctgagccgtctacttacaaagaagccattttaagttctgattctgaaaaatggtttgccgctatgggagatgagatggagtccctacacaagaatcagacatgggatctggtcatacagccttcggggagaaagattattacttgcaaatgggttttcaagaagaaggaagggatatcaccagcagaaggagtcaagtataaagtcagggttgttgctagaggtttcaaccaaagagagggagtggactacaatgagatcttctcaccagtggtcagacatacttccatccgagtgttactagcgatagttgcacatcagaatctggagcttgaaacacttgatgtgaagacagcgtttctacatggagagttggaggaagagatatacatgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="+" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="56670" stop="57918"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56970" g_stop="57618" g_length="649"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="649" r_length="649" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="+" ref_id="SGN-E539761" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539761" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56970" e_stop="57618"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACGTCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCAAAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGCCAGGGTTGTTGCCAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</genome_strand>
        <mrna_strand>TACGTCAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGTCAGGGTTGTTGCTAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAAACACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E284788" ref_strand="+" ref_description="SGN-E284788 [cLES-3-F2]">
      <seq>acgttagaaactaggagtcttgacaaacaggtggagtttcaagtcattcagaacgagagcgatttaaaggaacctgaagaggaggatcaagagccacagactgaaactgatattccagaatctatgccatcagatatccatcagagtatagctcaagatcggtcaaggagggttggagttcggccacctacgaggtatggttttgaggacatggtgggttatgcactgcaggctgctgaagaggtagatacatctgagccgtctacttacaaagaagccattttaagttctgattctgaaaaatggtttgccgatatgggagatgagatggagtccctacacaagaatcagacatgggatctggtcatacagtcttcggggagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="+" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="56671" stop="57655"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56971" g_stop="57355" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="+" ref_id="SGN-E284788" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56971" e_stop="57355"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGTCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCAAAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAA</genome_strand>
        <mrna_strand>ACGTTAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGTCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGCTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGATATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGTCTTCGGGGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E343338" ref_strand="+" ref_description="SGN-E343338 [cTOF-17-N22]">
      <seq>gtttccaagttccagggaaggaaaatcacgtctgcaagttgaagaagtccttatatggacttaagcagtctccaaggcagtggtataaaaggtttgacagctatatggtgaagttgggctatactcggagctcatatgattgttgtgtctactacaataggctcaatgatgattcattcatctatctggtgctttatgtagatgatatgttgatagctgcaaagaagaagtatgacattcagaagctgaagggtttacttagtgctgagtttgagatgaaggatctgggagccgctcggaagattttagggatggagatcattagagacagagagagaaggaaacttttcttgtcacagagaagctacattcagaaggtcttggcgaggtttggcatgtcttcatctaagcccattgatacccccagtgctgccaatatccatctcactgccatgttcgctccacagtcagaagaagagaaggagtatatgtcacgagtcccttatgccagtgccgtaagaagtttgatgtatgctatggtctgtacaaggccagatttagcacatgcagtcagtgtagtgagcagattcatgggacaaccagggagagaacattggcaggctgtgaagagaattttccggtaccttagaggtacatctgacgttggtctcatttatggaggtgatactcagtgcttggttactggctattctgattcagactatgctggagatgttgacacaagaagatcgatgactggctatgtgtttaccctgggaggatctgtcgtcagttggaaggcaacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="+" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="57329" stop="58736"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57629" g_stop="58436" g_length="808"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="808" r_length="808" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="+" ref_id="SGN-E343338" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57629" e_stop="58436"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTATATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGAAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAGGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGACTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</genome_strand>
        <mrna_strand>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAAGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTGGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E300807" ref_strand="+" ref_description="SGN-E300807 [cLEW-8-E22]">
      <seq>cagtacatcactactactatattgtttgttacaccacattactttcttgtctctgtttttttctctcaaagcttgtaacttttgttcatgggtatttttctttactttcagtgattcaatacccaatattttctttagggttttagtttctttttctataaacccattggttcaattaaaatggagactagtgaccagaggtctttagctgaagaggatggaaaaaactgtacaaacaatcttaattccagagttgatcctcctcctcttcttgttgaaaaggttggtgaatcacgtgaaattgtagaggaactacaactctgcgaactgcagacgaaacaactacctctggaagtacctgaaagaaccattgatggacaaacagaagattttgttaggatagacatgtccacatcaccagttcaaactcccaagagagtgattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="+" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="62811" stop="64870"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63111" g_stop="63392" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="282" r_length="282" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63393" i_stop="64407" i_length="1015">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64408" g_stop="64570" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="445" r_length="163" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="+" ref_id="SGN-E300807" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300807" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63111" e_stop="63392"/>
          <exon e_start="64408" e_stop="64570"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTACATCACTACTACTATATTGTTTGTTACACCACATTACTTTCTTGTCTCTGTTTTTTTCTCTCAAAGCTTGTAACTTTTGTTCATGGGTATTTTTCTTTACTTTCAGTGATTCAATACCCAATATTTTCTTTAGGGTTTTAGTTTCTTTTTCTATAAACCCATTGTTTCAATTAAAATGGAGACTAGTGACCAGAGGTCTTTAGCTGAAGAGGATGGAAAAAACTGTACAAACAATCTTAATTCCAGAGTTGATCCTCCTCCTCTTCTTGTTGAAAAGGTAGCTTTTTTAATGATTTCTTGTGATATTCTGCTTGAGAACTAATTTGGGGTGTTGTATATGTGTTTTGTTTCTGCTAATTGTTTCTGATTTTACCCATTTTTCAATTTGAGCTAAAAAAAAATTGATCTTGGATTGGTTTTTTCTGTCAAATTCTCAGCTTTTCCACATTTTCTCAATTTTTGCTATGGCTTTTCTTTACTCTTGATTTCTTGGGTTTGTGGAGGATATGACCTTATATAGGAGGTTGTGGAGGTTAGTAGGTTTGGAGTTTTGTTTGTTGTGGTATTAGCCTTATACTTGTAGTGAATTGCTTTTGATTTCTATTATTGTTTATTGTGTTTTGTTTATTGAAACAATTTTGTTGTTGTTAGTGTTTTCTTATTAGTTGTCATGTTTATTTTACTCTCTTTTTTTCTTATCATGCCTACTTTGATGTGTTGTATTCGAGCTGAGGGTGCTCGTGAAATAGCCTCTCTACCCTCACGATATAGGGGTCAGGTCTGCATATACTCTACTTTTCCACATATTCCACTTGTCAGATTTCATGGGGTATGTTGTTGTAATTCTATTAGATTTTTAGCTTATTACACATTTCTCTCTTGGAGCTATGGCTTCTTTTCTTATTGATTTGTTGTTACATTCTGTTTGTTTACTAACTTTGGTGCTCTATATTGGGTTCTGTTTCTGGTAACTTTGCTGCTTTTTACCATTTCTCAATTTGATCTATTTCCTTTCTTTCTTCTTCTTGATTTGTTTTGATTTGGTAAAACTGTGGATTTGGGTCTTCACCGACTGTTTTGTATTATTTTGGCATGAAGTTTCTGTCTTTGTCTTTGCTTGTATTCTTGGAACTAATACGTTGTAAACGGTGCCACGTGCTTATTCCTTGTATCTGAGAAGTGTTTAGAGTTTATATCTTTGTTTGGTTGCAAATTGGTGCAGTTATGTTAGTATGGCAATAAATAAGAAGTTGAGTAGTAACTTTGGTATTTTGGTTCTTAATATCTGTTAGGTTGGTGAATCAAGTGAAATTGTAGAGGAACTACAACTCTGCGAACTGCAGACGAAACAACTACCTCTGGAAGTACCTGAAAGAACCATTGATGGACAAACAGAAGATTTTGTTAGGATAGACATGTCCACATCACCAGTTCAAACTCCCAAGAGAGTGATTT</genome_strand>
        <mrna_strand>CAGTACATCACTACTACTATATTGTTTGTTACACCACATTACTTTCTTGTCTCTGTTTTTTTCTCTCAAAGCTTGTAACTTTTGTTCATGGGTATTTTTCTTTACTTTCAGTGATTCAATACCCAATATTTTCTTTAGGGTTTTAGTTTCTTTTTCTATAAACCCATTGGTTCAATTAAAATGGAGACTAGTGACCAGAGGTCTTTAGCTGAAGAGGATGGAAAAAACTGTACAAACAATCTTAATTCCAGAGTTGATCCTCCTCCTCTTCTTGTTGAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGTGAATCACGTGAAATTGTAGAGGAACTACAACTCTGCGAACTGCAGACGAAACAACTACCTCTGGAAGTACCTGAAAGAACCATTGATGGACAAACAGAAGATTTTGTTAGGATAGACATGTCCACATCACCAGTTCAAACTCCCAAGAGAGTGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E324724" ref_strand="+" ref_description="SGN-E324724 [cTOC-8-B22]">
      <seq>atcactactactatattgttcgtaacaccacgggacttggttgaatctgatggtttctctcaaagctagtaacttttgttcatgggtatttttctttactttcactgattcaatacccaatattttctttagggttttaatatctttttctataaacccattgtttcaattaaaatggagactagtgaccagaggtctttaactgaagaggatggaaaaaactgtacaaacaatcttaattccagagttgatcctccttctattcttgttgaaaaggttggtgaatcaaatgaaattgtagaggaactacaactctgcgaactgctgacgaaacaactacctctggaagtacctgaaagaaccattgatggacaaacagaagattttgttaggatagacatgtgcacatcaccagttcaaactcccaagagagtgattttctctccatcgcccagtcctaaccatgtcagactaaacgaatctcctagtccctcattaccgcgggcaaaatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="+" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="62817" stop="64944"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63117" g_stop="63392" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="276" r_length="276" r_score="0.931"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63393" i_stop="64407" i_length="1015">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.989" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64408" g_stop="64644" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="513" r_length="237" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="+" ref_id="SGN-E324724" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324724" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63117" e_stop="63392"/>
          <exon e_start="64408" e_stop="64644"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCACTACTACTATATTGTTTGTTACACCACATTACTTTCTTGTCTCTGTTTTTTTCTCTCAAAGCTTGTAACTTTTGTTCATGGGTATTTTTCTTTACTTTCAGTGATTCAATACCCAATATTTTCTTTAGGGTTTTAGTTTCTTTTTCTATAAACCCATTGTTTCAATTAAAATGGAGACTAGTGACCAGAGGTCTTTAGCTGAAGAGGATGGAAAAAACTGTACAAACAATCTTAATTCCAGAGTTGATCCTCCTCCTCTTCTTGTTGAAAAGGTAGCTTTTTTAATGATTTCTTGTGATATTCTGCTTGAGAACTAATTTGGGGTGTTGTATATGTGTTTTGTTTCTGCTAATTGTTTCTGATTTTACCCATTTTTCAATTTGAGCTAAAAAAAAATTGATCTTGGATTGGTTTTTTCTGTCAAATTCTCAGCTTTTCCACATTTTCTCAATTTTTGCTATGGCTTTTCTTTACTCTTGATTTCTTGGGTTTGTGGAGGATATGACCTTATATAGGAGGTTGTGGAGGTTAGTAGGTTTGGAGTTTTGTTTGTTGTGGTATTAGCCTTATACTTGTAGTGAATTGCTTTTGATTTCTATTATTGTTTATTGTGTTTTGTTTATTGAAACAATTTTGTTGTTGTTAGTGTTTTCTTATTAGTTGTCATGTTTATTTTACTCTCTTTTTTTCTTATCATGCCTACTTTGATGTGTTGTATTCGAGCTGAGGGTGCTCGTGAAATAGCCTCTCTACCCTCACGATATAGGGGTCAGGTCTGCATATACTCTACTTTTCCACATATTCCACTTGTCAGATTTCATGGGGTATGTTGTTGTAATTCTATTAGATTTTTAGCTTATTACACATTTCTCTCTTGGAGCTATGGCTTCTTTTCTTATTGATTTGTTGTTACATTCTGTTTGTTTACTAACTTTGGTGCTCTATATTGGGTTCTGTTTCTGGTAACTTTGCTGCTTTTTACCATTTCTCAATTTGATCTATTTCCTTTCTTTCTTCTTCTTGATTTGTTTTGATTTGGTAAAACTGTGGATTTGGGTCTTCACCGACTGTTTTGTATTATTTTGGCATGAAGTTTCTGTCTTTGTCTTTGCTTGTATTCTTGGAACTAATACGTTGTAAACGGTGCCACGTGCTTATTCCTTGTATCTGAGAAGTGTTTAGAGTTTATATCTTTGTTTGGTTGCAAATTGGTGCAGTTATGTTAGTATGGCAATAAATAAGAAGTTGAGTAGTAACTTTGGTATTTTGGTTCTTAATATCTGTTAGGTTGGTGAATCAAGTGAAATTGTAGAGGAACTACAACTCTGCGAACTGCAGACGAAACAACTACCTCTGGAAGTACCTGAAAGAACCATTGATGGACAAACAGAAGATTTTGTTAGGATAGACATGTCCACATCACCAGTTCAAACTCCCAAGAGAGTGATTTTCTCGCCATCGCCCAGTCCTAACCATGTCAGACTAAACGAATCTCCTAGTCCCTCATTACCGTGGGCAAAATCA</genome_strand>
        <mrna_strand>ATCACTACTACTATATTGTTCGTAACACCACGGGACTTGGTTGAATCTGATGGTTTCTCTCAAAGCTAGTAACTTTTGTTCATGGGTATTTTTCTTTACTTTCACTGATTCAATACCCAATATTTTCTTTAGGGTTTTAATATCTTTTTCTATAAACCCATTGTTTCAATTAAAATGGAGACTAGTGACCAGAGGTCTTTAACTGAAGAGGATGGAAAAAACTGTACAAACAATCTTAATTCCAGAGTTGATCCTCCTTCTATTCTTGTTGAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGTGAATCAAATGAAATTGTAGAGGAACTACAACTCTGCGAACTGCTGACGAAACAACTACCTCTGGAAGTACCTGAAAGAACCATTGATGGACAAACAGAAGATTTTGTTAGGATAGACATGTGCACATCACCAGTTCAAACTCCCAAGAGAGTGATTTTCTCTCCATCGCCCAGTCCTAACCATGTCAGACTAAACGAATCTCCTAGTCCCTCATTACCGCGGGCAAAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E335750" ref_strand="+" ref_description="SGN-E335750 [cTOE-8-N21]">
      <seq>tcactactactatattgtttgttacaccacattactttcttgtctctgtttttttctctcaaagcttgtaacttttgttcatgggtatttttctttactttcagtgattcaatacccaatattttctttagggttttagtttctttttctataaacccattgtttcaattaaaatggagactagtgaccagaggtctttagctgaagaggatggaaaaaactgtacaaacaatcttaattccagagttgatcctcctcctcttcttgttgaaaaggttggtgaatcaagtgaaattgtagaggaactacaactctgcgaactgcagacgaaacaactacctctggaagtacctgaaagaaccattgatggacaaacagaagattttgttaggatagacatgtccacatcaccagttcaaactcccaagagagtgattttctcgccatcgcccagtcctaaccatgtcagactaaacgaatctcctagtccctcattaccgtgggcaaaatcatccattaaatctctcctccctaaaataagtttcaaattacgaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="+" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="62818" stop="64989"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63118" g_stop="63392" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="275" r_length="275" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63393" i_stop="64407" i_length="1015">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64408" g_stop="64689" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="557" r_length="282" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="+" ref_id="SGN-E335750" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335750" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63118" e_stop="63392"/>
          <exon e_start="64408" e_stop="64689"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTACTACTATATTGTTTGTTACACCACATTACTTTCTTGTCTCTGTTTTTTTCTCTCAAAGCTTGTAACTTTTGTTCATGGGTATTTTTCTTTACTTTCAGTGATTCAATACCCAATATTTTCTTTAGGGTTTTAGTTTCTTTTTCTATAAACCCATTGTTTCAATTAAAATGGAGACTAGTGACCAGAGGTCTTTAGCTGAAGAGGATGGAAAAAACTGTACAAACAATCTTAATTCCAGAGTTGATCCTCCTCCTCTTCTTGTTGAAAAGGTAGCTTTTTTAATGATTTCTTGTGATATTCTGCTTGAGAACTAATTTGGGGTGTTGTATATGTGTTTTGTTTCTGCTAATTGTTTCTGATTTTACCCATTTTTCAATTTGAGCTAAAAAAAAATTGATCTTGGATTGGTTTTTTCTGTCAAATTCTCAGCTTTTCCACATTTTCTCAATTTTTGCTATGGCTTTTCTTTACTCTTGATTTCTTGGGTTTGTGGAGGATATGACCTTATATAGGAGGTTGTGGAGGTTAGTAGGTTTGGAGTTTTGTTTGTTGTGGTATTAGCCTTATACTTGTAGTGAATTGCTTTTGATTTCTATTATTGTTTATTGTGTTTTGTTTATTGAAACAATTTTGTTGTTGTTAGTGTTTTCTTATTAGTTGTCATGTTTATTTTACTCTCTTTTTTTCTTATCATGCCTACTTTGATGTGTTGTATTCGAGCTGAGGGTGCTCGTGAAATAGCCTCTCTACCCTCACGATATAGGGGTCAGGTCTGCATATACTCTACTTTTCCACATATTCCACTTGTCAGATTTCATGGGGTATGTTGTTGTAATTCTATTAGATTTTTAGCTTATTACACATTTCTCTCTTGGAGCTATGGCTTCTTTTCTTATTGATTTGTTGTTACATTCTGTTTGTTTACTAACTTTGGTGCTCTATATTGGGTTCTGTTTCTGGTAACTTTGCTGCTTTTTACCATTTCTCAATTTGATCTATTTCCTTTCTTTCTTCTTCTTGATTTGTTTTGATTTGGTAAAACTGTGGATTTGGGTCTTCACCGACTGTTTTGTATTATTTTGGCATGAAGTTTCTGTCTTTGTCTTTGCTTGTATTCTTGGAACTAATACGTTGTAAACGGTGCCACGTGCTTATTCCTTGTATCTGAGAAGTGTTTAGAGTTTATATCTTTGTTTGGTTGCAAATTGGTGCAGTTATGTTAGTATGGCAATAAATAAGAAGTTGAGTAGTAACTTTGGTATTTTGGTTCTTAATATCTGTTAGGTTGGTGAATCAAGTGAAATTGTAGAGGAACTACAACTCTGCGAACTGCAGACGAAACAACTACCTCTGGAAGTACCTGAAAGAACCATTGATGGACAAACAGAAGATTTTGTTAGGATAGACATGTCCACATCACCAGTTCAAACTCCCAAGAGAGTGATTTTCTCGCCATCGCCCAGTCCTAACCATGTCAGACTAAACGAATCTCCTAGTCCCTCATTACCGTGGGCAAAATCATCCATTAAATCTCTCCTCCCTAAAATAAGTTTCAAATTACGAAAT</genome_strand>
        <mrna_strand>TCACTACTACTATATTGTTTGTTACACCACATTACTTTCTTGTCTCTGTTTTTTTCTCTCAAAGCTTGTAACTTTTGTTCATGGGTATTTTTCTTTACTTTCAGTGATTCAATACCCAATATTTTCTTTAGGGTTTTAGTTTCTTTTTCTATAAACCCATTGTTTCAATTAAAATGGAGACTAGTGACCAGAGGTCTTTAGCTGAAGAGGATGGAAAAAACTGTACAAACAATCTTAATTCCAGAGTTGATCCTCCTCCTCTTCTTGTTGAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGTGAATCAAGTGAAATTGTAGAGGAACTACAACTCTGCGAACTGCAGACGAAACAACTACCTCTGGAAGTACCTGAAAGAACCATTGATGGACAAACAGAAGATTTTGTTAGGATAGACATGTCCACATCACCAGTTCAAACTCCCAAGAGAGTGATTTTCTCGCCATCGCCCAGTCCTAACCATGTCAGACTAAACGAATCTCCTAGTCCCTCATTACCGTGGGCAAAATCATCCATTAAATCTCTCCTCCCTAAAATAAGTTTCAAATTACGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E335605" ref_strand="+" ref_description="SGN-E335605 [cTOE-8-M21]">
      <seq>tcactactactatattgtttgttacaccacattactttcttgtctctgtttttttctctcaaagcttgtaacttttgttcatgggtatttttctttactttcagtgattcaatacccaatattttctttagggttttagtttctttttctataaacccattgtttcaattaaaatggagactagtgaccagaggtctttagctgaagaggatggaaaaaactgtacaaacaatcttaattccagagatgatcctcctcctcttcttgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="+" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="62818" stop="63687"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63118" g_stop="63387" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="270" r_length="270" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="+" ref_id="SGN-E335605" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>270</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335605" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63118" e_stop="63387"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTACTACTATATTGTTTGTTACACCACATTACTTTCTTGTCTCTGTTTTTTTCTCTCAAAGCTTGTAACTTTTGTTCATGGGTATTTTTCTTTACTTTCAGTGATTCAATACCCAATATTTTCTTTAGGGTTTTAGTTTCTTTTTCTATAAACCCATTGTTTCAATTAAAATGGAGACTAGTGACCAGAGGTCTTTAGCTGAAGAGGATGGAAAAAACTGTACAAACAATCTTAATTCCAGAGTTGATCCTCCTCCTCTTCTTGTTG</genome_strand>
        <mrna_strand>TCACTACTACTATATTGTTTGTTACACCACATTACTTTCTTGTCTCTGTTTTTTTCTCTCAAAGCTTGTAACTTTTGTTCATGGGTATTTTTCTTTACTTTCAGTGATTCAATACCCAATATTTTCTTTAGGGTTTTAGTTTCTTTTTCTATAAACCCATTGTTTCAATTAAAATGGAGACTAGTGACCAGAGGTCTTTAGCTGAAGAGGATGGAAAAAACTGTACAAACAATCTTAATTCCAGAGATGATCCTCCTCCTCTTCTTGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E332475" ref_strand="+" ref_description="SGN-E332475 [cTOD-17-B22]">
      <seq>tactatattgtttgttacaccacattactttcttgtctctgtttttttctctcaaagcttgtaacttttgttcatgggtatttttctttactttcagtgattcaatacccaatattttctttagggttttagtttctttttctataaacccattgtttcaattaaaatggagactagtgaccagaggtctttagctgaagaggatggaaaaaactgtacaaacaatcttaattccagagttgatcctcctcctcttcttgttgaaaaggttggtgaatcaagtgaaattgtagaggaactacaactctgcgaactgcagacgaaacaactacctctggaagtacctgaaagaaccattgatggacaaacagaagattttgttaggatagacatgtccacatcaccagttcaaactcccaagagagtgattttctcgccatcgcccagtcctaaccatgtcagactaaacgaatctcctagtccctcattaccgtgggcaaaatcatccattaaatctctcctccctaaaataagtttcaaattacgaaataagacgagtgatattgaaaaagctgcaatgttagctcttggagtctctcctttgcctcaggacaaaccttcaattttgaggactctatccattaaaagaattttcaattcaaagatgaacagaacttcatcattgcctataactccaatttgacactctaatccagaaatcacgcatggtgactacagagatgctacattttattcagttaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="+" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="62825" stop="65199"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63125" g_stop="63392" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="268" r_length="268" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63393" i_stop="64407" i_length="1015">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64408" g_stop="64899" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="760" r_length="492" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="+" ref_id="SGN-E332475" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>760</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332475" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63125" e_stop="63392"/>
          <exon e_start="64408" e_stop="64899"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTATATTGTTTGTTACACCACATTACTTTCTTGTCTCTGTTTTTTTCTCTCAAAGCTTGTAACTTTTGTTCATGGGTATTTTTCTTTACTTTCAGTGATTCAATACCCAATATTTTCTTTAGGGTTTTAGTTTCTTTTTCTATAAACCCATTGTTTCAATTAAAATGGAGACTAGTGACCAGAGGTCTTTAGCTGAAGAGGATGGAAAAAACTGTACAAACAATCTTAATTCCAGAGTTGATCCTCCTCCTCTTCTTGTTGAAAAGGTAGCTTTTTTAATGATTTCTTGTGATATTCTGCTTGAGAACTAATTTGGGGTGTTGTATATGTGTTTTGTTTCTGCTAATTGTTTCTGATTTTACCCATTTTTCAATTTGAGCTAAAAAAAAATTGATCTTGGATTGGTTTTTTCTGTCAAATTCTCAGCTTTTCCACATTTTCTCAATTTTTGCTATGGCTTTTCTTTACTCTTGATTTCTTGGGTTTGTGGAGGATATGACCTTATATAGGAGGTTGTGGAGGTTAGTAGGTTTGGAGTTTTGTTTGTTGTGGTATTAGCCTTATACTTGTAGTGAATTGCTTTTGATTTCTATTATTGTTTATTGTGTTTTGTTTATTGAAACAATTTTGTTGTTGTTAGTGTTTTCTTATTAGTTGTCATGTTTATTTTACTCTCTTTTTTTCTTATCATGCCTACTTTGATGTGTTGTATTCGAGCTGAGGGTGCTCGTGAAATAGCCTCTCTACCCTCACGATATAGGGGTCAGGTCTGCATATACTCTACTTTTCCACATATTCCACTTGTCAGATTTCATGGGGTATGTTGTTGTAATTCTATTAGATTTTTAGCTTATTACACATTTCTCTCTTGGAGCTATGGCTTCTTTTCTTATTGATTTGTTGTTACATTCTGTTTGTTTACTAACTTTGGTGCTCTATATTGGGTTCTGTTTCTGGTAACTTTGCTGCTTTTTACCATTTCTCAATTTGATCTATTTCCTTTCTTTCTTCTTCTTGATTTGTTTTGATTTGGTAAAACTGTGGATTTGGGTCTTCACCGACTGTTTTGTATTATTTTGGCATGAAGTTTCTGTCTTTGTCTTTGCTTGTATTCTTGGAACTAATACGTTGTAAACGGTGCCACGTGCTTATTCCTTGTATCTGAGAAGTGTTTAGAGTTTATATCTTTGTTTGGTTGCAAATTGGTGCAGTTATGTTAGTATGGCAATAAATAAGAAGTTGAGTAGTAACTTTGGTATTTTGGTTCTTAATATCTGTTAGGTTGGTGAATCAAGTGAAATTGTAGAGGAACTACAACTCTGCGAACTGCAGACGAAACAACTACCTCTGGAAGTACCTGAAAGAACCATTGATGGACAAACAGAAGATTTTGTTAGGATAGACATGTCCACATCACCAGTTCAAACTCCCAAGAGAGTGATTTTCTCGCCATCGCCCAGTCCTAACCATGTCAGACTAAACGAATCTCCTAGTCCCTCATTACCGTGGGCAAAATCATCCATTAAATCTCTCCTCCCTAAAATAAGTTTCAAATTACGAAATAAGACGAGTGATATTGAAAAAGCTGCAATGTTAGCTCTTGGAGTCTCTCCTTTGCCTCAGGACAAACCTTCAATTTTGAGGACTCTATCCATTAAAAGAATTTTCAATTCAAAGATGAACAGAACTTCATCATTGCCTATAACTCCAATTGAACACTCTAATCCAGAATCAACGCATGGTGACTACAGAGATGCTACATTTTATTCAGTT</genome_strand>
        <mrna_strand>TACTATATTGTTTGTTACACCACATTACTTTCTTGTCTCTGTTTTTTTCTCTCAAAGCTTGTAACTTTTGTTCATGGGTATTTTTCTTTACTTTCAGTGATTCAATACCCAATATTTTCTTTAGGGTTTTAGTTTCTTTTTCTATAAACCCATTGTTTCAATTAAAATGGAGACTAGTGACCAGAGGTCTTTAGCTGAAGAGGATGGAAAAAACTGTACAAACAATCTTAATTCCAGAGTTGATCCTCCTCCTCTTCTTGTTGAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGTGAATCAAGTGAAATTGTAGAGGAACTACAACTCTGCGAACTGCAGACGAAACAACTACCTCTGGAAGTACCTGAAAGAACCATTGATGGACAAACAGAAGATTTTGTTAGGATAGACATGTCCACATCACCAGTTCAAACTCCCAAGAGAGTGATTTTCTCGCCATCGCCCAGTCCTAACCATGTCAGACTAAACGAATCTCCTAGTCCCTCATTACCGTGGGCAAAATCATCCATTAAATCTCTCCTCCCTAAAATAAGTTTCAAATTACGAAATAAGACGAGTGATATTGAAAAAGCTGCAATGTTAGCTCTTGGAGTCTCTCCTTTGCCTCAGGACAAACCTTCAATTTTGAGGACTCTATCCATTAAAAGAATTTTCAATTCAAAGATGAACAGAACTTCATCATTGCCTATAACTCCAATTTGACACTCTAATCCAGAAATCACGCATGGTGACTACAGAGATGCTACATTTTATTCAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E315864" ref_strand="+" ref_description="SGN-E315864 [cTOA-26-A4]">
      <seq>tacaccacattactttcttgtctctgtttttttctctcaaagcttgtaacttttgttcatgggtatttttctttactttcagtgattcaatacccaatattttctttagggttttagtttctttttctataaacccattgtttcaattaaaatggagactagtgaccagaggtctttagctgaagaggatggaaaaaactgtacaaacaatcttaattccagagttgatcctcctcctcttcttgttgaaaaggttggtgaatcaagtgaaattgtagaggaactacaactctgcgaactgcagacgaaacaactacctctggaagtacctgaaagaaccattgatggacaaacagaagattttgttaggatagacatgtccacatcaccagttcaaactcccaagagagtgattttctcgccatcgcccagtcctaaccatgtcagactaaacgaatctcctagtccctcattaccgtgggcaaaaatcatccattaaatctctcctccctaaaataagtttcaaattacgaaataagacgagtgatattgaaaaagctgcaatgttagctcttggagtctctcctttgcctcaagacaaaccttccattttgaggactctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="+" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="62840" stop="65077"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63140" g_stop="63392" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="253" r_length="253" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63393" i_stop="64407" i_length="1015">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64408" g_stop="64777" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="624" r_length="371" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="+" ref_id="SGN-E315864" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315864" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63140" e_stop="63392"/>
          <exon e_start="64408" e_stop="64777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACACCACATTACTTTCTTGTCTCTGTTTTTTTCTCTCAAAGCTTGTAACTTTTGTTCATGGGTATTTTTCTTTACTTTCAGTGATTCAATACCCAATATTTTCTTTAGGGTTTTAGTTTCTTTTTCTATAAACCCATTGTTTCAATTAAAATGGAGACTAGTGACCAGAGGTCTTTAGCTGAAGAGGATGGAAAAAACTGTACAAACAATCTTAATTCCAGAGTTGATCCTCCTCCTCTTCTTGTTGAAAAGGTAGCTTTTTTAATGATTTCTTGTGATATTCTGCTTGAGAACTAATTTGGGGTGTTGTATATGTGTTTTGTTTCTGCTAATTGTTTCTGATTTTACCCATTTTTCAATTTGAGCTAAAAAAAAATTGATCTTGGATTGGTTTTTTCTGTCAAATTCTCAGCTTTTCCACATTTTCTCAATTTTTGCTATGGCTTTTCTTTACTCTTGATTTCTTGGGTTTGTGGAGGATATGACCTTATATAGGAGGTTGTGGAGGTTAGTAGGTTTGGAGTTTTGTTTGTTGTGGTATTAGCCTTATACTTGTAGTGAATTGCTTTTGATTTCTATTATTGTTTATTGTGTTTTGTTTATTGAAACAATTTTGTTGTTGTTAGTGTTTTCTTATTAGTTGTCATGTTTATTTTACTCTCTTTTTTTCTTATCATGCCTACTTTGATGTGTTGTATTCGAGCTGAGGGTGCTCGTGAAATAGCCTCTCTACCCTCACGATATAGGGGTCAGGTCTGCATATACTCTACTTTTCCACATATTCCACTTGTCAGATTTCATGGGGTATGTTGTTGTAATTCTATTAGATTTTTAGCTTATTACACATTTCTCTCTTGGAGCTATGGCTTCTTTTCTTATTGATTTGTTGTTACATTCTGTTTGTTTACTAACTTTGGTGCTCTATATTGGGTTCTGTTTCTGGTAACTTTGCTGCTTTTTACCATTTCTCAATTTGATCTATTTCCTTTCTTTCTTCTTCTTGATTTGTTTTGATTTGGTAAAACTGTGGATTTGGGTCTTCACCGACTGTTTTGTATTATTTTGGCATGAAGTTTCTGTCTTTGTCTTTGCTTGTATTCTTGGAACTAATACGTTGTAAACGGTGCCACGTGCTTATTCCTTGTATCTGAGAAGTGTTTAGAGTTTATATCTTTGTTTGGTTGCAAATTGGTGCAGTTATGTTAGTATGGCAATAAATAAGAAGTTGAGTAGTAACTTTGGTATTTTGGTTCTTAATATCTGTTAGGTTGGTGAATCAAGTGAAATTGTAGAGGAACTACAACTCTGCGAACTGCAGACGAAACAACTACCTCTGGAAGTACCTGAAAGAACCATTGATGGACAAACAGAAGATTTTGTTAGGATAGACATGTCCACATCACCAGTTCAAACTCCCAAGAGAGTGATTTTCTCGCCATCGCCCAGTCCTAACCATGTCAGACTAAACGAATCTCCTAGTCCCTCATTACCGTGGGC-AAAATCATCCATTAAATCTCTCCTCCCTAAAATAAGTTTCAAATTACGAAATAAGACGAGTGATATTGAAAAAGCTGCAATGTTAGCTCTTGGAGTCTCTCCTTTGCCTCAGGACAAACCTTCAATTTTGAGGACTCTAT</genome_strand>
        <mrna_strand>TACACCACATTACTTTCTTGTCTCTGTTTTTTTCTCTCAAAGCTTGTAACTTTTGTTCATGGGTATTTTTCTTTACTTTCAGTGATTCAATACCCAATATTTTCTTTAGGGTTTTAGTTTCTTTTTCTATAAACCCATTGTTTCAATTAAAATGGAGACTAGTGACCAGAGGTCTTTAGCTGAAGAGGATGGAAAAAACTGTACAAACAATCTTAATTCCAGAGTTGATCCTCCTCCTCTTCTTGTTGAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGTGAATCAAGTGAAATTGTAGAGGAACTACAACTCTGCGAACTGCAGACGAAACAACTACCTCTGGAAGTACCTGAAAGAACCATTGATGGACAAACAGAAGATTTTGTTAGGATAGACATGTCCACATCACCAGTTCAAACTCCCAAGAGAGTGATTTTCTCGCCATCGCCCAGTCCTAACCATGTCAGACTAAACGAATCTCCTAGTCCCTCATTACCGTGGGCAAAAATCATCCATTAAATCTCTCCTCCCTAAAATAAGTTTCAAATTACGAAATAAGACGAGTGATATTGAAAAAGCTGCAATGTTAGCTCTTGGAGTCTCTCCTTTGCCTCAAGACAAACCTTCCATTTTGAGGACTCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E335656" ref_strand="+" ref_description="SGN-E335656 [cTOE-8-L19]">
      <seq>ttttttctgtcaaagcttgtaacttttgctcatgggtatttttctttactttcagtgattcaatacccaatattttctttagggttttagtttctttttctataaacccattgtttcaattaaaatggagactagtgaccagaggtctttagctgaagaggatggaaaaaactgtacaaacaatcttaattccagagttgatcctcctcctcttcttgttgaaaaggttggtgaatcaagtgaaattgtagaggaactacaactctgcgaactgcagacgaaacaactacctctggaagtacctgaaagaaccattgatggacaaacagaagattttgttaggatagacatgtccacatcaccagttcaaactcccaagagagtgattttctcgccatcgcccagtcctaaccatgtcagactaaacgaatctcctagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="+" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="62867" stop="64921"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63167" g_stop="63392" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="226" r_length="226" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63393" i_stop="64407" i_length="1015">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64408" g_stop="64621" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="440" r_length="214" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="+" ref_id="SGN-E335656" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335656" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63167" e_stop="63392"/>
          <exon e_start="64408" e_stop="64621"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTCTCTCAAAGCTTGTAACTTTTGTTCATGGGTATTTTTCTTTACTTTCAGTGATTCAATACCCAATATTTTCTTTAGGGTTTTAGTTTCTTTTTCTATAAACCCATTGTTTCAATTAAAATGGAGACTAGTGACCAGAGGTCTTTAGCTGAAGAGGATGGAAAAAACTGTACAAACAATCTTAATTCCAGAGTTGATCCTCCTCCTCTTCTTGTTGAAAAGGTAGCTTTTTTAATGATTTCTTGTGATATTCTGCTTGAGAACTAATTTGGGGTGTTGTATATGTGTTTTGTTTCTGCTAATTGTTTCTGATTTTACCCATTTTTCAATTTGAGCTAAAAAAAAATTGATCTTGGATTGGTTTTTTCTGTCAAATTCTCAGCTTTTCCACATTTTCTCAATTTTTGCTATGGCTTTTCTTTACTCTTGATTTCTTGGGTTTGTGGAGGATATGACCTTATATAGGAGGTTGTGGAGGTTAGTAGGTTTGGAGTTTTGTTTGTTGTGGTATTAGCCTTATACTTGTAGTGAATTGCTTTTGATTTCTATTATTGTTTATTGTGTTTTGTTTATTGAAACAATTTTGTTGTTGTTAGTGTTTTCTTATTAGTTGTCATGTTTATTTTACTCTCTTTTTTTCTTATCATGCCTACTTTGATGTGTTGTATTCGAGCTGAGGGTGCTCGTGAAATAGCCTCTCTACCCTCACGATATAGGGGTCAGGTCTGCATATACTCTACTTTTCCACATATTCCACTTGTCAGATTTCATGGGGTATGTTGTTGTAATTCTATTAGATTTTTAGCTTATTACACATTTCTCTCTTGGAGCTATGGCTTCTTTTCTTATTGATTTGTTGTTACATTCTGTTTGTTTACTAACTTTGGTGCTCTATATTGGGTTCTGTTTCTGGTAACTTTGCTGCTTTTTACCATTTCTCAATTTGATCTATTTCCTTTCTTTCTTCTTCTTGATTTGTTTTGATTTGGTAAAACTGTGGATTTGGGTCTTCACCGACTGTTTTGTATTATTTTGGCATGAAGTTTCTGTCTTTGTCTTTGCTTGTATTCTTGGAACTAATACGTTGTAAACGGTGCCACGTGCTTATTCCTTGTATCTGAGAAGTGTTTAGAGTTTATATCTTTGTTTGGTTGCAAATTGGTGCAGTTATGTTAGTATGGCAATAAATAAGAAGTTGAGTAGTAACTTTGGTATTTTGGTTCTTAATATCTGTTAGGTTGGTGAATCAAGTGAAATTGTAGAGGAACTACAACTCTGCGAACTGCAGACGAAACAACTACCTCTGGAAGTACCTGAAAGAACCATTGATGGACAAACAGAAGATTTTGTTAGGATAGACATGTCCACATCACCAGTTCAAACTCCCAAGAGAGTGATTTTCTCGCCATCGCCCAGTCCTAACCATGTCAGACTAAACGAATCTCCTAGTC</genome_strand>
        <mrna_strand>TTTTTTCTGTCAAAGCTTGTAACTTTTGCTCATGGGTATTTTTCTTTACTTTCAGTGATTCAATACCCAATATTTTCTTTAGGGTTTTAGTTTCTTTTTCTATAAACCCATTGTTTCAATTAAAATGGAGACTAGTGACCAGAGGTCTTTAGCTGAAGAGGATGGAAAAAACTGTACAAACAATCTTAATTCCAGAGTTGATCCTCCTCCTCTTCTTGTTGAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGTGAATCAAGTGAAATTGTAGAGGAACTACAACTCTGCGAACTGCAGACGAAACAACTACCTCTGGAAGTACCTGAAAGAACCATTGATGGACAAACAGAAGATTTTGTTAGGATAGACATGTCCACATCACCAGTTCAAACTCCCAAGAGAGTGATTTTCTCGCCATCGCCCAGTCCTAACCATGTCAGACTAAACGAATCTCCTAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E307788" ref_strand="+" ref_description="SGN-E307788 [cLEY-16-N4]">
      <seq>tttgttcatgggtatttttctttactttcagtgattcaatacccaatatttgctttagggttttagtttctttttctataaacccattgtttcaattaaaatggagactagtgaccagaggtctttagctgaagaggatggaaaaaactgtacaaacaatcttaattccagagttgatcctcctcctcttcttgttgaaaaggttggtgaatcaagtgaaattgtagaggaactacaactctgcgaactgcagacgaaacaactacctctggaagtacctgaaagaaccattgatggacaaacagaagattttgttaggatagacatgtccacatcaccagttcaaactcccaagagagtgattttctcgccatcgcccagtcctaaccatgtcagactaaacgaatctcctagtccctcattaccgtgggcaaaatcatccattaaatctctcctccctaaaataagtttcaaattacgaaataagacgagtgatattgaaaaagctgcaatgttagctcttggagtctctcctttgcctcaggacaaaccttcaattttgaggactctatccattaaaagaattttcaattcaaagatgaacagaacttcatcattgcctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="+" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="62891" stop="65129"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63191" g_stop="63392" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="202" r_length="202" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63393" i_stop="64407" i_length="1015">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64408" g_stop="64829" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="624" r_length="422" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="+" ref_id="SGN-E307788" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63191" e_stop="63392"/>
          <exon e_start="64408" e_stop="64829"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTTCATGGGTATTTTTCTTTACTTTCAGTGATTCAATACCCAATATTTTCTTTAGGGTTTTAGTTTCTTTTTCTATAAACCCATTGTTTCAATTAAAATGGAGACTAGTGACCAGAGGTCTTTAGCTGAAGAGGATGGAAAAAACTGTACAAACAATCTTAATTCCAGAGTTGATCCTCCTCCTCTTCTTGTTGAAAAGGTAGCTTTTTTAATGATTTCTTGTGATATTCTGCTTGAGAACTAATTTGGGGTGTTGTATATGTGTTTTGTTTCTGCTAATTGTTTCTGATTTTACCCATTTTTCAATTTGAGCTAAAAAAAAATTGATCTTGGATTGGTTTTTTCTGTCAAATTCTCAGCTTTTCCACATTTTCTCAATTTTTGCTATGGCTTTTCTTTACTCTTGATTTCTTGGGTTTGTGGAGGATATGACCTTATATAGGAGGTTGTGGAGGTTAGTAGGTTTGGAGTTTTGTTTGTTGTGGTATTAGCCTTATACTTGTAGTGAATTGCTTTTGATTTCTATTATTGTTTATTGTGTTTTGTTTATTGAAACAATTTTGTTGTTGTTAGTGTTTTCTTATTAGTTGTCATGTTTATTTTACTCTCTTTTTTTCTTATCATGCCTACTTTGATGTGTTGTATTCGAGCTGAGGGTGCTCGTGAAATAGCCTCTCTACCCTCACGATATAGGGGTCAGGTCTGCATATACTCTACTTTTCCACATATTCCACTTGTCAGATTTCATGGGGTATGTTGTTGTAATTCTATTAGATTTTTAGCTTATTACACATTTCTCTCTTGGAGCTATGGCTTCTTTTCTTATTGATTTGTTGTTACATTCTGTTTGTTTACTAACTTTGGTGCTCTATATTGGGTTCTGTTTCTGGTAACTTTGCTGCTTTTTACCATTTCTCAATTTGATCTATTTCCTTTCTTTCTTCTTCTTGATTTGTTTTGATTTGGTAAAACTGTGGATTTGGGTCTTCACCGACTGTTTTGTATTATTTTGGCATGAAGTTTCTGTCTTTGTCTTTGCTTGTATTCTTGGAACTAATACGTTGTAAACGGTGCCACGTGCTTATTCCTTGTATCTGAGAAGTGTTTAGAGTTTATATCTTTGTTTGGTTGCAAATTGGTGCAGTTATGTTAGTATGGCAATAAATAAGAAGTTGAGTAGTAACTTTGGTATTTTGGTTCTTAATATCTGTTAGGTTGGTGAATCAAGTGAAATTGTAGAGGAACTACAACTCTGCGAACTGCAGACGAAACAACTACCTCTGGAAGTACCTGAAAGAACCATTGATGGACAAACAGAAGATTTTGTTAGGATAGACATGTCCACATCACCAGTTCAAACTCCCAAGAGAGTGATTTTCTCGCCATCGCCCAGTCCTAACCATGTCAGACTAAACGAATCTCCTAGTCCCTCATTACCGTGGGCAAAATCATCCATTAAATCTCTCCTCCCTAAAATAAGTTTCAAATTACGAAATAAGACGAGTGATATTGAAAAAGCTGCAATGTTAGCTCTTGGAGTCTCTCCTTTGCCTCAGGACAAACCTTCAATTTTGAGGACTCTATCCATTAAAAGAATTTTCAATTCAAAGATGAACAGAACTTCATCATTGCCTAT</genome_strand>
        <mrna_strand>TTTGTTCATGGGTATTTTTCTTTACTTTCAGTGATTCAATACCCAATATTTGCTTTAGGGTTTTAGTTTCTTTTTCTATAAACCCATTGTTTCAATTAAAATGGAGACTAGTGACCAGAGGTCTTTAGCTGAAGAGGATGGAAAAAACTGTACAAACAATCTTAATTCCAGAGTTGATCCTCCTCCTCTTCTTGTTGAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGTGAATCAAGTGAAATTGTAGAGGAACTACAACTCTGCGAACTGCAGACGAAACAACTACCTCTGGAAGTACCTGAAAGAACCATTGATGGACAAACAGAAGATTTTGTTAGGATAGACATGTCCACATCACCAGTTCAAACTCCCAAGAGAGTGATTTTCTCGCCATCGCCCAGTCCTAACCATGTCAGACTAAACGAATCTCCTAGTCCCTCATTACCGTGGGCAAAATCATCCATTAAATCTCTCCTCCCTAAAATAAGTTTCAAATTACGAAATAAGACGAGTGATATTGAAAAAGCTGCAATGTTAGCTCTTGGAGTCTCTCCTTTGCCTCAGGACAAACCTTCAATTTTGAGGACTCTATCCATTAAAAGAATTTTCAATTCAAAGATGAACAGAACTTCATCATTGCCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E273979" ref_strand="+" ref_description="SGN-E273979 [cLEN-8-C17]">
      <seq>gaccaaaggtctttagctgaagaggatggaaaaaactgtacaaacaatcttaattccagagttgatcctcctcctcttcttgttgaaaaggttggtgaatcaagtgaaattgtagaggaactacaactctgcgaactgcagacgaaacaactacctctggaagtacctgaaagaaccattgatggacaaacagaagattttgttaggatagacatgtccacatcaccagttcaaactcccaagagagtgattttctcgccatcgcccagtcctaaccatgtcagactaaacgaatctcctagtccctcatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="+" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="63003" stop="64929"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63303" g_stop="63392" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63393" i_stop="64407" i_length="1015">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64408" g_stop="64629" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="312" r_length="222" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="+" ref_id="SGN-E273979" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>312</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273979" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63303" e_stop="63392"/>
          <exon e_start="64408" e_stop="64629"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCAGAGGTCTTTAGCTGAAGAGGATGGAAAAAACTGTACAAACAATCTTAATTCCAGAGTTGATCCTCCTCCTCTTCTTGTTGAAAAGGTAGCTTTTTTAATGATTTCTTGTGATATTCTGCTTGAGAACTAATTTGGGGTGTTGTATATGTGTTTTGTTTCTGCTAATTGTTTCTGATTTTACCCATTTTTCAATTTGAGCTAAAAAAAAATTGATCTTGGATTGGTTTTTTCTGTCAAATTCTCAGCTTTTCCACATTTTCTCAATTTTTGCTATGGCTTTTCTTTACTCTTGATTTCTTGGGTTTGTGGAGGATATGACCTTATATAGGAGGTTGTGGAGGTTAGTAGGTTTGGAGTTTTGTTTGTTGTGGTATTAGCCTTATACTTGTAGTGAATTGCTTTTGATTTCTATTATTGTTTATTGTGTTTTGTTTATTGAAACAATTTTGTTGTTGTTAGTGTTTTCTTATTAGTTGTCATGTTTATTTTACTCTCTTTTTTTCTTATCATGCCTACTTTGATGTGTTGTATTCGAGCTGAGGGTGCTCGTGAAATAGCCTCTCTACCCTCACGATATAGGGGTCAGGTCTGCATATACTCTACTTTTCCACATATTCCACTTGTCAGATTTCATGGGGTATGTTGTTGTAATTCTATTAGATTTTTAGCTTATTACACATTTCTCTCTTGGAGCTATGGCTTCTTTTCTTATTGATTTGTTGTTACATTCTGTTTGTTTACTAACTTTGGTGCTCTATATTGGGTTCTGTTTCTGGTAACTTTGCTGCTTTTTACCATTTCTCAATTTGATCTATTTCCTTTCTTTCTTCTTCTTGATTTGTTTTGATTTGGTAAAACTGTGGATTTGGGTCTTCACCGACTGTTTTGTATTATTTTGGCATGAAGTTTCTGTCTTTGTCTTTGCTTGTATTCTTGGAACTAATACGTTGTAAACGGTGCCACGTGCTTATTCCTTGTATCTGAGAAGTGTTTAGAGTTTATATCTTTGTTTGGTTGCAAATTGGTGCAGTTATGTTAGTATGGCAATAAATAAGAAGTTGAGTAGTAACTTTGGTATTTTGGTTCTTAATATCTGTTAGGTTGGTGAATCAAGTGAAATTGTAGAGGAACTACAACTCTGCGAACTGCAGACGAAACAACTACCTCTGGAAGTACCTGAAAGAACCATTGATGGACAAACAGAAGATTTTGTTAGGATAGACATGTCCACATCACCAGTTCAAACTCCCAAGAGAGTGATTTTCTCGCCATCGCCCAGTCCTAACCATGTCAGACTAAACGAATCTCCTAGTCCCTCATTA</genome_strand>
        <mrna_strand>GACCAAAGGTCTTTAGCTGAAGAGGATGGAAAAAACTGTACAAACAATCTTAATTCCAGAGTTGATCCTCCTCCTCTTCTTGTTGAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGTGAATCAAGTGAAATTGTAGAGGAACTACAACTCTGCGAACTGCAGACGAAACAACTACCTCTGGAAGTACCTGAAAGAACCATTGATGGACAAACAGAAGATTTTGTTAGGATAGACATGTCCACATCACCAGTTCAAACTCCCAAGAGAGTGATTTTCTCGCCATCGCCCAGTCCTAACCATGTCAGACTAAACGAATCTCCTAGTCCCTCATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E545856" ref_strand="+" ref_description="SGN-E545856 [TUS-68-O18]">
      <seq>gcgaactgcagacgaaacaactacctctggaagtacctgaaagaaccattgatggacaaacagaagattttgtaaggatagacatgtccacatcaccagttcaaactcccaagagagtgattttctcgccatcgcccagtcctaaccatgtcagattaaacgaatctcctagtccctcattaccgtgggctaaatcatccattaaatctctcctccctaaattaagtttcaaattacgaaataagacaagtgatattgaaaaagctgcaatgttagctcttggagtctctcctttgcctcaggacaaaccttcaattttgaggactctatccattaaaagaattttcaattcaaagatgaacagaacttcatcattgcctataactccaattgaacactctaatccagaatcaacgcatggtgactacagagatgctacattttattcagttaaagcaggagtgcatcccatacttcgctcacattcagtgccaacactgatcaaagatgaaagcctaaaacagatggattgcgtagggaatgtctatcgtgtagtcccctcaactcctctcgtgccaagacatgatgatacatcatcaaatgcaactcaaactattggcgcagttgaaaatgctgattttggtggagacatcactcaagaagaggctgtctgcagaatctgcttcatcgaacttggggagggttcggaaactttgaagatggagtgtagctgtaaaggcgaactagccttagctcatcaagcatgtgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="+" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="64148" stop="67534"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64448" g_stop="64899" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="452" r_length="452" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64900" i_stop="65898" i_length="999">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65899" g_stop="66070" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="624" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66071" i_stop="67088" i_length="1018">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.835" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67089" g_stop="67234" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="625" r_stop="770" r_length="146" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="+" ref_id="SGN-E545856" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>770</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E545856" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64448" e_stop="64899"/>
          <exon e_start="65899" e_stop="66070"/>
          <exon e_start="67089" e_stop="67234"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAACTGCAGACGAAACAACTACCTCTGGAAGTACCTGAAAGAACCATTGATGGACAAACAGAAGATTTTGTTAGGATAGACATGTCCACATCACCAGTTCAAACTCCCAAGAGAGTGATTTTCTCGCCATCGCCCAGTCCTAACCATGTCAGACTAAACGAATCTCCTAGTCCCTCATTACCGTGGGCAAAATCATCCATTAAATCTCTCCTCCCTAAAATAAGTTTCAAATTACGAAATAAGACGAGTGATATTGAAAAAGCTGCAATGTTAGCTCTTGGAGTCTCTCCTTTGCCTCAGGACAAACCTTCAATTTTGAGGACTCTATCCATTAAAAGAATTTTCAATTCAAAGATGAACAGAACTTCATCATTGCCTATAACTCCAATTGAACACTCTAATCCAGAATCAACGCATGGTGACTACAGAGATGCTACATTTTATTCAGTTGTAAGTATTTATATTTGCTCGTGTCGTTAATGCTGTGATTGAATTCACTATCTTCTTCTTCCGAACTGTAAAATTCTCAGTGAGGTTATGCTCCATTGAGTAATAAATGGTAAAAAAGCACAGCCAAGGGTGTGGTCAAGGACTGGAATATATAACTCCAGTTGAACACTCTAGTCGAGGTGCATGCACCACGGTTATTAAAAAAATGGTAAAAAAGCTGCAAATTTGGGTAACTCACAAAGGAAAAAAAACTCAAGCTATGTAAACATCTGTTTACATCTTTAAGCGTTTGAATACACAAGTATGGAAGTGGAAAGACCAAATGAAAAATGAGTGTAGTTAAAACATAAGCATGATTATTCTTCCCCAACTAGATTTTAATAGGTGTTATGCTCGGACTCTTCACTTTTGGTGTTGCATCCGAGTCAACATGATGTGGGTGTGACTGTGAGATTCGTACCCGTTTTGGGTATTTTGACCGAATTTGATGGAGAAATTTTGGACAGATTCAATGATTTCTGTGCACAAAACAAAAACTGATATGAAATTGAAGAAAATGGAATACCTTGTGTATATAAATTTCTATTGTCACTCCCTTTCCTTTAATCTCCTTCCGGATTCTCCTTTTGATCAAGATTTTCTCGTCAAGTTTTACATGTAATATCTCATAATTTAGGCTTTATAACTCTATTTTTAGTTACTGTATGATTTTTAGCTGAATCCCCCGCACCTGTAGATCCGTATCCCTAAATCTAAAAATTTAGATCTTAGAGGATCCGACCTCTAGATCTGCACCCGTATCGGACACCCGCACCCGAGTCCGAGCAACTTAGGGTGTTAATGCATTTACCTGGATGTTATATCTGAATGTATGTAGAGATCCAGGATACTTTTACTGGTTTGTTGCTATGAATATAAATGTCTTCGTAATTTCACTTAATGTTCAGTATTTCCTTTTCTCTTGTTGTTTCTAAATCTTACAAACTCACCGCCTTCTAGAAAGCAGGAGTGCATCCCATACTTCGCTCACATTCAGTGCCAACACTGATCAAAGATGAAAGCCTAAAACAGATGGATTGCGTAGGGAATGTCTATCGTGTAGTCCCCTCAACTCCTCTCGTGCCAAGACATGATGATACATCATCAAATGCAACTCAAACTATTGGCGCAGGTAATTTGTTTATGTCTAATCATGTTTGATGCATTGTCACATGATAAAGGCTTTTGTTCTGCAACTGGTGATTCTTTGTTAGATAAGTCTTGAATGCTTCGTTAAGTCTGAATTTACATACCGAGTAAGAAGCAGTTGCTTGGATACATGTGTGACTTACTTTTAGGAAGCCAAACAAATAAAGAATTTTCAACCTAGGATTTCACAATACACTCTCCGTCCCTATGATGTAGTTTGACTAGGCACAATGTTTAAGTAATATGAGAAGACTTTGCTATGTTCCAAAAATTTCCTTAAAAGAAATAAATTCTTGAATAGAGGAGTACACCTTTTTGTGGACTTTTTGCCAAATAAGTGGCATCCAACATGCATAAAATGTTGATAGTGTTGTTAAATTTGCCAAGTAAGGTAAACTGTCATTCATTTTTGAACTAACTATTAAGGAGGGTGTGTCACATAAATTGACAGAGGGAGTATAAATTTATAAAAATTAGGTTGCTTAGTGGGTCATGCTAATTTCTGACGACCGCAACTTTTGTGGAGAAATATAATTAGAAGTTGTATTACACTCCCTCCGTTGCAATTTGCTTGTCTTACTTTTCTTTTTAGTCCGTTTCAAATAGAATGTCTCTTTTCCTTTTTGGCAACTCTTAAATATCAAATTTTTTACATATGACATGTTTAAGACCACAACATTAAATGACAATTTGGAATATTCTGCATATTTTTAGTTTAAGACCACAAGATTAAAAAATATTCGTTGCTTTCTTAAACTCCGTGCCATGTCAAGACCATAGAAAGAAATTGAAACAGAGGAAGTGGAATCTGATTTATATTCCAAAGAATCATCGCTCAGAATCTGGTAACTATGGGAAATCGATTTAATAACCGATATTTGGACACAGAATATTCTGTTAATCTATTCTTATGTAGATACGCATCCTGCATTCATGACTTGAACCTTATGTTCACTCACCTGGGATAACTAACCTACACCTTTCTTAGTGTTATGGTTCAGTTGAAAATGCTAATTTTGGTGGAGACATCACTCAAGAAGAGGCTGTCTGCAGAATCTGCTTCATCGAACTTGGGGAGGATTCGGAAACTTTGAAGATGGAGTGTAGCTGTAAAGGCGAACTAGCCTTAGCTCATCAATCATGTGCT</genome_strand>
        <mrna_strand>GCGAACTGCAGACGAAACAACTACCTCTGGAAGTACCTGAAAGAACCATTGATGGACAAACAGAAGATTTTGTAAGGATAGACATGTCCACATCACCAGTTCAAACTCCCAAGAGAGTGATTTTCTCGCCATCGCCCAGTCCTAACCATGTCAGATTAAACGAATCTCCTAGTCCCTCATTACCGTGGGCTAAATCATCCATTAAATCTCTCCTCCCTAAATTAAGTTTCAAATTACGAAATAAGACAAGTGATATTGAAAAAGCTGCAATGTTAGCTCTTGGAGTCTCTCCTTTGCCTCAGGACAAACCTTCAATTTTGAGGACTCTATCCATTAAAAGAATTTTCAATTCAAAGATGAACAGAACTTCATCATTGCCTATAACTCCAATTGAACACTCTAATCCAGAATCAACGCATGGTGACTACAGAGATGCTACATTTTATTCAGTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGCAGGAGTGCATCCCATACTTCGCTCACATTCAGTGCCAACACTGATCAAAGATGAAAGCCTAAAACAGATGGATTGCGTAGGGAATGTCTATCGTGTAGTCCCCTCAACTCCTCTCGTGCCAAGACATGATGATACATCATCAAATGCAACTCAAACTATTGGCGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAAAATGCTGATTTTGGTGGAGACATCACTCAAGAAGAGGCTGTCTGCAGAATCTGCTTCATCGAACTTGGGGAGGGTTCGGAAACTTTGAAGATGGAGTGTAGCTGTAAAGGCGAACTAGCCTTAGCTCATCAAGCATGTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E261988" ref_strand="+" ref_description="SGN-E261988 [cLEG-58-B7]">
      <seq>attcaaagatgaacagaacttcatcattgcctataactccaattgaacactctaatccagaatcaacgcatggtgactacagagatgctacattttattcagttaaagcaggagtgcatcccatacttcgctcacattcagtgccaacactgatcaaagatgaaagcctaaaacagatggattgcgtagggaatgtctatcgtgtagtcccctcaactcctctcgtgccaagacatgatgatacatcatcaaatgcaactcaaactattggcgcagtgttatggttcagttgaaaatgctaattttggtggagacatcactcaagaagaggctgtctgcagaatctgcttcatcgaacttggggaggattcggaaactttgaagatggagtgtagctgtaaaggcgaactagccttagctcatcaatcatgtgctgtaaaatggtttagcataaaaggcaacaagatttgtgatgtctgtaatgaagaggttcggaacttacctgtcactcttttgcggattcaaagtactattcgtagaggaaatggatccccagctgactctgtccgatacagggtttggcaggacgttcctggtcttgtccttgtcagcatgcttgcctacttttgttttctggagcagcttttggttaccagaatgggatccgggcgcgatcgctatatctctgcccttttcatgcatcttgggtctccttgcatccatgacagcaacaactatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="+" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="64496" stop="68226"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64796" g_stop="64899" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64900" i_stop="65898" i_length="999">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65899" g_stop="66070" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="276" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66071" i_stop="67075" i_length="1005">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.363" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67076" g_stop="67374" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="575" r_length="299" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67375" i_stop="67693" i_length="319">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67694" g_stop="67766" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="576" r_stop="648" r_length="73" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67767" i_stop="67836" i_length="70">
            <donor d_prob="0.631" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67837" g_stop="67926" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="649" r_stop="739" r_length="91" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="+" ref_id="SGN-E261988" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>738</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261988" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64796" e_stop="64899"/>
          <exon e_start="65899" e_stop="66070"/>
          <exon e_start="67076" e_stop="67374"/>
          <exon e_start="67694" e_stop="67766"/>
          <exon e_start="67837" e_stop="67926"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCAAAGATGAACAGAACTTCATCATTGCCTATAACTCCAATTGAACACTCTAATCCAGAATCAACGCATGGTGACTACAGAGATGCTACATTTTATTCAGTTGTAAGTATTTATATTTGCTCGTGTCGTTAATGCTGTGATTGAATTCACTATCTTCTTCTTCCGAACTGTAAAATTCTCAGTGAGGTTATGCTCCATTGAGTAATAAATGGTAAAAAAGCACAGCCAAGGGTGTGGTCAAGGACTGGAATATATAACTCCAGTTGAACACTCTAGTCGAGGTGCATGCACCACGGTTATTAAAAAAATGGTAAAAAAGCTGCAAATTTGGGTAACTCACAAAGGAAAAAAAACTCAAGCTATGTAAACATCTGTTTACATCTTTAAGCGTTTGAATACACAAGTATGGAAGTGGAAAGACCAAATGAAAAATGAGTGTAGTTAAAACATAAGCATGATTATTCTTCCCCAACTAGATTTTAATAGGTGTTATGCTCGGACTCTTCACTTTTGGTGTTGCATCCGAGTCAACATGATGTGGGTGTGACTGTGAGATTCGTACCCGTTTTGGGTATTTTGACCGAATTTGATGGAGAAATTTTGGACAGATTCAATGATTTCTGTGCACAAAACAAAAACTGATATGAAATTGAAGAAAATGGAATACCTTGTGTATATAAATTTCTATTGTCACTCCCTTTCCTTTAATCTCCTTCCGGATTCTCCTTTTGATCAAGATTTTCTCGTCAAGTTTTACATGTAATATCTCATAATTTAGGCTTTATAACTCTATTTTTAGTTACTGTATGATTTTTAGCTGAATCCCCCGCACCTGTAGATCCGTATCCCTAAATCTAAAAATTTAGATCTTAGAGGATCCGACCTCTAGATCTGCACCCGTATCGGACACCCGCACCCGAGTCCGAGCAACTTAGGGTGTTAATGCATTTACCTGGATGTTATATCTGAATGTATGTAGAGATCCAGGATACTTTTACTGGTTTGTTGCTATGAATATAAATGTCTTCGTAATTTCACTTAATGTTCAGTATTTCCTTTTCTCTTGTTGTTTCTAAATCTTACAAACTCACCGCCTTCTAGAAAGCAGGAGTGCATCCCATACTTCGCTCACATTCAGTGCCAACACTGATCAAAGATGAAAGCCTAAAACAGATGGATTGCGTAGGGAATGTCTATCGTGTAGTCCCCTCAACTCCTCTCGTGCCAAGACATGATGATACATCATCAAATGCAACTCAAACTATTGGCGCAGGTAATTTGTTTATGTCTAATCATGTTTGATGCATTGTCACATGATAAAGGCTTTTGTTCTGCAACTGGTGATTCTTTGTTAGATAAGTCTTGAATGCTTCGTTAAGTCTGAATTTACATACCGAGTAAGAAGCAGTTGCTTGGATACATGTGTGACTTACTTTTAGGAAGCCAAACAAATAAAGAATTTTCAACCTAGGATTTCACAATACACTCTCCGTCCCTATGATGTAGTTTGACTAGGCACAATGTTTAAGTAATATGAGAAGACTTTGCTATGTTCCAAAAATTTCCTTAAAAGAAATAAATTCTTGAATAGAGGAGTACACCTTTTTGTGGACTTTTTGCCAAATAAGTGGCATCCAACATGCATAAAATGTTGATAGTGTTGTTAAATTTGCCAAGTAAGGTAAACTGTCATTCATTTTTGAACTAACTATTAAGGAGGGTGTGTCACATAAATTGACAGAGGGAGTATAAATTTATAAAAATTAGGTTGCTTAGTGGGTCATGCTAATTTCTGACGACCGCAACTTTTGTGGAGAAATATAATTAGAAGTTGTATTACACTCCCTCCGTTGCAATTTGCTTGTCTTACTTTTCTTTTTAGTCCGTTTCAAATAGAATGTCTCTTTTCCTTTTTGGCAACTCTTAAATATCAAATTTTTTACATATGACATGTTTAAGACCACAACATTAAATGACAATTTGGAATATTCTGCATATTTTTAGTTTAAGACCACAAGATTAAAAAATATTCGTTGCTTTCTTAAACTCCGTGCCATGTCAAGACCATAGAAAGAAATTGAAACAGAGGAAGTGGAATCTGATTTATATTCCAAAGAATCATCGCTCAGAATCTGGTAACTATGGGAAATCGATTTAATAACCGATATTTGGACACAGAATATTCTGTTAATCTATTCTTATGTAGATACGCATCCTGCATTCATGACTTGAACCTTATGTTCACTCACCTGGGATAACTAACCTACACCTTTCTTAGTGTTATGGTTCAGTTGAAAATGCTAATTTTGGTGGAGACATCACTCAAGAAGAGGCTGTCTGCAGAATCTGCTTCATCGAACTTGGGGAGGATTCGGAAACTTTGAAGATGGAGTGTAGCTGTAAAGGCGAACTAGCCTTAGCTCATCAATCATGTGCTGTAAAATGGTTTAGCATAAAAGGCAACAAGATTTGTGATGTCTGTAATGAAGAGGTTCGGAACTTACCTGTCACTCTTTTGCGGATTCAAAGTACTATTCGTAGAGGAAATGGATCCCCAGCTGACTCTGTCCGATACAGGTATGCTCATGGCCGTTCCTTTCATTTCTTTTTTTAAAATATATATCTTTTGAATTAAAGTTAACTTCATTCAGTGCCTACACCTTTCTGTTAACTTTGTTCACTACTTTGCAACAGCCACTAGGAATTACTATTATATGTCTCGAGTTTTAATACAATTTAATGATGAGCGACATTTCTTCGTTGAATGAACTTTATAGTTCTCTAGTATTTCTTATGAGGAAATAGCTCAAGTTTAATCGCATGGTGACTATCGAACGAAGAAATGTTCAATTCAAATTATATGGTATTTTACTTGACGTGTGCAAACTGCTTACAGGGTTTGGCAGGACGTTCCTGTTCTTGTCCTTGTCAGCATGCTTGCCTACTTTTGTTTTCTGGAGCAGCTTTTGGTGAGTAAAAGACTAATGCAGTAATGTCATCCTACTCCAGAAAAGGATCTTAAATAATGCTTGTTTATAGGTTACCAGAATGGGATCC-GGCGCGATCGCTATATCTCTGCCCTTTTCATGCATCTTGGGTCTCCTTGCATCCATGACAGCAACAACTATG</genome_strand>
        <mrna_strand>ATTCAAAGATGAACAGAACTTCATCATTGCCTATAACTCCAATTGAACACTCTAATCCAGAATCAACGCATGGTGACTACAGAGATGCTACATTTTATTCAGTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGCAGGAGTGCATCCCATACTTCGCTCACATTCAGTGCCAACACTGATCAAAGATGAAAGCCTAAAACAGATGGATTGCGTAGGGAATGTCTATCGTGTAGTCCCCTCAACTCCTCTCGTGCCAAGACATGATGATACATCATCAAATGCAACTCAAACTATTGGCGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTATGGTTCAGTTGAAAATGCTAATTTTGGTGGAGACATCACTCAAGAAGAGGCTGTCTGCAGAATCTGCTTCATCGAACTTGGGGAGGATTCGGAAACTTTGAAGATGGAGTGTAGCTGTAAAGGCGAACTAGCCTTAGCTCATCAATCATGTGCTGTAAAATGGTTTAGCATAAAAGGCAACAAGATTTGTGATGTCTGTAATGAAGAGGTTCGGAACTTACCTGTCACTCTTTTGCGGATTCAAAGTACTATTCGTAGAGGAAATGGATCCCCAGCTGACTCTGTCCGATACAG...............................................................................................................................................................................................................................................................................................................................GGTTTGGCAGGACGTTCCTGGTCTTGTCCTTGTCAGCATGCTTGCCTACTTTTGTTTTCTGGAGCAGCTTTTG......................................................................GTTACCAGAATGGGATCCGGGCGCGATCGCTATATCTCTGCCCTTTTCATGCATCTTGGGTCTCCTTGCATCCATGACAGCAACAACTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E545855" ref_strand="+" ref_description="SGN-E545855 [TUS-68-O18](-)">
      <seq>cagcatgcttgcctactttgttttctggagcatcttttggttaccagaatgggatccggcgcgattgctatatctctgcccttttcgtgcatcttgggtctccttgcatccatgacagcaacaactatggtgcaaaggcgatatgcttgggtttatgctgtcagtcagtttgccttggtggttctgtttgctcatgtgttctactcactgcttcgagtgcaggcagttctagctgttcttcttgccacctttgcgggttttggaggtgtaatgtgtgggacttcttttcttcttgagcttctgaaatggaggagtagatggaattattggtcaaatgagccacatgattctcaagaaggggcacagccaaatcaatcatcagaagttactcctacgcctcaggtagaaggtcaaactcgtcgagctgaagcaggtacttctggagttgtcaatggaagttgatacaggacaaacataatctctttatatcaagaaaccaaagaaaaacactagtttctgtctcttgtaagcaaaattattgtagtgtatagctagtccttgcaaatcacaactgtacagttttgagtttatatcaaagctctcgttctaacttcagaattctaaacatgaacacgagacttgaaatgaattccactgtaggttgtaggttctttatcagggcgtaaggaatagtgttgcacgcaaaagacgagtggttcatttttccagtagatgggcagtgcatgaaaggaaactgaaataatgtaaataccataactttacaaggatctcttctcctgttatagaagaattagatcaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="+" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="67427" stop="69461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67727" g_stop="67766" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67767" i_stop="67836" i_length="70">
            <donor d_prob="0.631" d_score="0.95"/>
            <acceptor a_prob="0.970" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67837" g_stop="67927" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="130" r_length="91" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67928" i_stop="68073" i_length="146">
            <donor d_prob="0.963" d_score="0.98"/>
            <acceptor a_prob="0.764" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68074" g_stop="68153" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="210" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68154" i_stop="68566" i_length="413">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68567" g_stop="69160" g_length="594"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="818" r_length="608" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="819" polyA_stop="844"/>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="+" ref_id="SGN-E545855" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>805</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E545855" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67727" e_stop="67766"/>
          <exon e_start="67837" e_stop="67927"/>
          <exon e_start="68074" e_stop="68153"/>
          <exon e_start="68567" e_stop="69160"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCATGCTTGCCTACTTTTGTTTTCTGGAGCAGCTTTTGGTGAGTAAAAGACTAATGCAGTAATGTCATCCTACTCCAGAAAAGGATCTTAAATAATGCTTGTTTATAGGTTACCAGAATGGGATCCGGCGCGATCGCTATATCTCTGCCCTTTTCATGCATCTTGGGTCTCCTTGCATCCATGACAGCAACAACTATGGGTACATGAACTAAACAAACACCCTCCGTTTCAGAAACTACTTTCGATTTCAGTTTAACAGTGTCGGTGTTTCACTTTTTTCTTCTATTTGCTGGTATACATTATACAGTAATATAACATATAAACAAACATGCTTTATTTGTTTAGTGCAAAGGCGATATGCTTGGGTTTATGCTGTCAGTCAGTTTGCCTTGGTGGTTCTGTTTGCTCATGTGTTCTACTCACTGGTAAGTTATGCTTCAGGTCAAATAAACAAAATACTTTAGGTAGAGAATACATACACAATCACTAAAACTTGGCCTCAACGGACAAGTAAGCACTACAACTTTGAGAGTGCACATCTAGACACCTCAACTTGGTCTGAACTGACAACTAAACAATCCAACTCGTCTTCACTGTGTCTCGTGGACACCAGACACTGACCTGACACATGAAGAAGCGTTGATGTGCATTACTCAAAGCACGAGTGCTTCCTTGCCAGTTGAGGCCATTAAGTGTCTGTTTATGTATTATGTATTATGCCATCATTTCACCTGACCACTCGGAAAGGAAAAAAAGAAGAAGATTTTCTGAATTTCCTGAATTGCCTCGGGCTCTGCCTAATACTAAAAACTCTCTCATCTTATGCTCGGGATTGTAGCTTCGAGTGCAGGCAGTTCTAGCTGTTCTTCTTGCCACCTTTGCGGGTTTTGGAGGTGTAATGTGTGGGACTTCTTTTCTTCTTGAGCTTCTGAAATGGAGGAGTAGATGGAATTATTGGTCAAATGAGCCACATGATTCTCAAGAAGGGGCACAGCCAAATCAATCATCAGAAGTTACTCCTATGCCTCAGGTAGAAAGTCAAACTCGTCGAGCTGAAGCTGGTACTTCTGGAGTTGTCAATGGAAGTTGATACAGGACAAACATAATCTCTTTATATCAAGAAACCAAAGGAAAACACTAGTTTCTGTCTCTTGTAAGCAAAATTATTGTAGTGTATAGCTAGTCCTTGCAAGTCACAACTGTACAGTTTTGAGTTTATATCAAAGCTCTCGTTCAAACTTCAGAATTCTAAACATGAACACGAGACTTGAAATGAATTCAACTGTAGGTTGTAGG-----T-T-----C---AGGAATGGCGTTGCACGCAAAAGACGAGTGGTTCATTTTTCCAGTAGATGGGCAGTGCATGAAAGGAAACTGAAATAATGTAAATACCATAACGTTACAAGGATCTCTTCTCCTGTTATCAAAAAATCAGATC</genome_strand>
        <mrna_strand>CAGCATGCTTGCCTACT-TTGTTTTCTGGAGCATCTTTTG......................................................................GTTACCAGAATGGGATCCGGCGCGATTGCTATATCTCTGCCCTTTTCGTGCATCTTGGGTCTCCTTGCATCCATGACAGCAACAACTATGG..................................................................................................................................................TGCAAAGGCGATATGCTTGGGTTTATGCTGTCAGTCAGTTTGCCTTGGTGGTTCTGTTTGCTCATGTGTTCTACTCACTG.............................................................................................................................................................................................................................................................................................................................................................................................................................CTTCGAGTGCAGGCAGTTCTAGCTGTTCTTCTTGCCACCTTTGCGGGTTTTGGAGGTGTAATGTGTGGGACTTCTTTTCTTCTTGAGCTTCTGAAATGGAGGAGTAGATGGAATTATTGGTCAAATGAGCCACATGATTCTCAAGAAGGGGCACAGCCAAATCAATCATCAGAAGTTACTCCTACGCCTCAGGTAGAAGGTCAAACTCGTCGAGCTGAAGCAGGTACTTCTGGAGTTGTCAATGGAAGTTGATACAGGACAAACATAATCTCTTTATATCAAGAAACCAAAGAAAAACACTAGTTTCTGTCTCTTGTAAGCAAAATTATTGTAGTGTATAGCTAGTCCTTGCAAATCACAACTGTACAGTTTTGAGTTTATATCAAAGCTCTCGTTCTAACTTCAGAATTCTAAACATGAACACGAGACTTGAAATGAATTCCACTGTAGGTTGTAGGTTCTTTATCAGGGCGTAAGGAATAGTGTTGCACGCAAAAGACGAGTGGTTCATTTTTCCAGTAGATGGGCAGTGCATGAAAGGAAACTGAAATAATGTAAATACCATAACTTTACAAGGATCTCTTCTCCTGTTATAGAAGAATTAGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E371999" ref_strand="+" ref_description="SGN-E371999 [TUS-30-K18](-)">
      <seq>cattcactcatgaatcagtgcttactgtctgccgggaagggcacattaagatctggatgagaccaggctttggtgaaaaccaatcaagcaactcagattctttattgagtactagtctaaaggagaagacatcgttatcagggaagactctttcttcgagttacaagcaatgacataacaatcatacaacgggttgcaaagtagaggatgcagtaagtgggggtccttttcgtacatactaccattgactgctcttcaattagtttgctcatttctaataagcacatgatatgacgttgctcgatgagattaactgaccaattgtatagcgaacaatgaagatgctgctgggagcaagaccaggttggaagaacagtatgtacctagcggtaagtatgaaatgcttaacaagaacttctaagctgatgtgctgaaataatcgatgttgtcttttgagatgcgaaatttctagttcccaccctgctagaactctcccagcccctcccttttcccctctttgttcttttctttcctttttttcttcctctgtaggcaatttttcctagtaactactggttgacatttttgtattggattacctcatgttttgccctgtctaatattttggccgtggcgtatgaggctgataaagcttatttaaggcattttttcataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="-" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="70745" stop="69468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70445" g_stop="69764" g_length="682"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="683" r_length="683" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="-" ref_id="SGN-E371999" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371999" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70445" e_stop="69764"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTCACTCATGAATCAGTGCTTACTGTCTGCCGGGAAGGGCACATTAAGATCTGGATGAGACCAGGCTTTGGTGAAAACCAATCAAGCAACTCAGATTCTTTATTGAGTACTAGTCTAAAGGAGAAGACATCGTTATCTGGGAAGACTCTTTCTTCGAGTTACAAGCAATAACATAACAATCATACAACGGGTTGCAAAGTAGAGGATGCAGTAAGT-GGGGTCCTTTTCGTACATACTACCATTGACTGCTCTTCAATTAGTTTGCTCATTTCTAATAAGCACATGATATGACGTTGCTCGATGAGATTAACTGACCAATTGTATAGCGAACAATGAAGATGCTGCTGGGAGCAAGATCAGGTTGGAAGAACAGTATGTACCTAGCGGTAAGTATGAAATGCTTAACAAGAACTTCTAAGCTGATGTGCTGAAATAATCGATATTGTCTTTTGAGATGCGAAATTTCTAGTTCCCACCCTGCTAGAACTCTCCCAGCCCCTCCCTTTTCCCCTCTTTGTTCTTTTCTTTCCTTTTTTTCTTCCTCTGTAGGCAATTTTTCCTAGTAACTACTGGTTGACATTTTTGTATTGGATTACCTCATGTTTTGCCCTGTCTAATATTTTGGCCGTGGCGTATGAGGCTGATAAAGCTTATTTAAGGCATTTTTTCATAAAAATTTT</genome_strand>
        <mrna_strand>CATTCACTCATGAATCAGTGCTTACTGTCTGCCGGGAAGGGCACATTAAGATCTGGATGAGACCAGGCTTTGGTGAAAACCAATCAAGCAACTCAGATTCTTTATTGAGTACTAGTCTAAAGGAGAAGACATCGTTATCAGGGAAGACTCTTTCTTCGAGTTACAAGCAATGACATAACAATCATACAACGGGTTGCAAAGTAGAGGATGCAGTAAGTGGGGGTCCTTTTCGTACATACTACCATTGACTGCTCTTCAATTAGTTTGCTCATTTCTAATAAGCACATGATATGACGTTGCTCGATGAGATTAACTGACCAATTGTATAGCGAACAATGAAGATGCTGCTGGGAGCAAGACCAGGTTGGAAGAACAGTATGTACCTAGCGGTAAGTATGAAATGCTTAACAAGAACTTCTAAGCTGATGTGCTGAAATAATCGATGTTGTCTTTTGAGATGCGAAATTTCTAGTTCCCACCCTGCTAGAACTCTCCCAGCCCCTCCCTTTTCCCCTCTTTGTTCTTTTCTTTCCTTTTTTTCTTCCTCTGTAGGCAATTTTTCCTAGTAACTACTGGTTGACATTTTTGTATTGGATTACCTCATGTTTTGCCCTGTCTAATATTTTGGCCGTGGCGTATGAGGCTGATAAAGCTTATTTAAGGCATTTTTTCATAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E215477" ref_strand="+" ref_description="SGN-E215477 [cLEL-20-E6](-)">
      <seq>gggagcaagatcaggttggaagaccagtatgtacctagcggtaagtataaaatgcttaacaagaacttctaagctgatgtgctgaaataatcgatattgtcttttgaagatgcgaaatttctagttcccaccctgctagaactctcccagcccctcccttttcccctctttgttcttttctttcctatttttcttcctctgtaggcaatttttcctagtaactactggttgacatttttgtattggattacctcatgttttgccctgtctaatattttggccgtggcgtatgaggctgataaagcttatttaaggcattttttcatccaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="-" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="70397" stop="69468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70097" g_stop="69785" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="314" r_length="314" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="329" polyA_stop="345"/>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="-" ref_id="SGN-E215477" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>313</cumulative_length_of_scored_exons>
        <coverage percentage="0.907" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E215477" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70097" e_stop="69785"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAGCAAGATCAGGTTGGAAGAACAGTATGTACCTAGCGGTAAGTATGAAATGCTTAACAAGAACTTCTAAGCTGATGTGCTGAAATAATCGATATTGTCTTTTG-AGATGCGAAATTTCTAGTTCCCACCCTGCTAGAACTCTCCCAGCCCCTCCCTTTTCCCCTCTTTGTTCTTTTCTTTCCTTTTTTTCTTCCTCTGTAGGCAATTTTTCCTAGTAACTACTGGTTGACATTTTTGTATTGGATTACCTCATGTTTTGCCCTGTCTAATATTTTGGCCGTGGCGTATGAGGCTGATAAAGCTTATTTAAG</genome_strand>
        <mrna_strand>GGGAGCAAGATCAGGTTGGAAGACCAGTATGTACCTAGCGGTAAGTATAAAATGCTTAACAAGAACTTCTAAGCTGATGTGCTGAAATAATCGATATTGTCTTTTGAAGATGCGAAATTTCTAGTTCCCACCCTGCTAGAACTCTCCCAGCCCCTCCCTTTTCCCCTCTTTGTTCTTTTCTTTCCTATTTTTCTTCCTCTGTAGGCAATTTTTCCTAGTAACTACTGGTTGACATTTTTGTATTGGATTACCTCATGTTTTGCCCTGTCTAATATTTTGGCCGTGGCGTATGAGGCTGATAAAGCTTATTTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E372000" ref_strand="+" ref_description="SGN-E372000 [TUS-30-K18]">
      <seq>gaagaagaagaaataggtgaaaaaaagtcaatatcatccttcacaaaacacttgatctagaagcaattgacaccctagaagattcataaaccgattgtttaaatgatctcataaaccccatatgttgaatttttgataggaacagattttttttttttgattttgatttggtgaagaatgatgaattctgggattagtagtaattcgatgtcgtcttcatcggcaccggggaataacagcagtaacaacgcacaatcacctggtttgaagacgtatttcaaaaccccagaaggaagatacaagcttcagtatgagaagactcaccctgctgggcttcttcattatgctcatggaaagactgtaactcaggtgactcttgctcatctcaaggataagccggtgcatgcgcagccccaagcatcatcaagttttggtgtgagcagtggtgttaggtcagctgcagcaaggttcttaggtggaaacggtagtaaaacacttagttttgttggaggaaatggtggaggtaagtctatcagtggcctgagtggtagggttggatcatttggggtgtcaagttcaagtagttctgttggtaattcaaattttgatggcaaaggaacctatttagtgttcaatgttggtgatgcaatttttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="-" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="78365" stop="75698"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78065" g_stop="77695" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="369" r_length="369" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77694" i_stop="76285" i_length="1410">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76284" g_stop="75998" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="656" r_length="287" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="-" ref_id="SGN-E372000" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372000" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78065" e_stop="77695"/>
          <exon e_start="76284" e_stop="75998"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAGAAGAAATTGGTGAAAAAAAGTCAATATCATCCTTCACAAAACACTTGATCTAGAAGCAATTGACACCCTAGAAGATTCATAAACCGATTGTTTAAATGATCTCATAAACCCCATATGTTGAATTTTTGATAGGAACAGATTTTTTTTTTTTTTGATTTTGATTTGGTGAAGAATGATGAATTCTGGGATTAGTAGTAATTCGATGTCGTCTTCATCGGCACCGGGGAATAACAGCAGTAACAACGCACAATCACCTGGTTTGAAGACGTATTTCAAAACCCCAGAAGGAAGATACAAGCTTCAGTATGAGAAGACTCACCCTGCTGGGCTTCTTCATTATGCTCATGGAAAGACTGTAACTCAGGTATTATAAAGATTAGCTCTTTAGCTTTCGTGGGTAATTGTCTTTTTCGTTCTTAATTGTGTTTATTGATGTTAATTTCAACTTTAGTGGTCTGTAAGATGTTCAAAATTGGATTTTTGAGTTGTGTTTTAGAAGGGGTTAGGCTAATATGGGTTAATTTCAAATATTTAGAATGAGTTTGAAGATTAAGGTAGAAGGCTAGTTAGTAGTTGTTCCCTCGTTTCTTTTCCTTATTTTTCTATGACTACTAATTGTTTTGCTTCGATATTGTCATTATGCTCATGTAGAGATTGTAACACAGGTATAACGATTCACTCTTAAGCTTTGCCGAGTTCTTGTCCTTTTCCTTCTTAATTGCGATTATTGATGTTAATTTCAACTTTAGCAGTTTGTAAGATGTTCTAAACAGGATATTTGAGCTGAGTTTTAGAAGGGGTTTGGCTAATATGGGTTAATTTCAAACATTTAGTGTGTGTTCGAGGGTTAGGGTAGAAGGCTAGTAAGTAGTTGTTTGCTTTTCCGATAGTTTACTATTATTCGTTTCTTTTCTTGCTTTTAGATTTCTATCACTACTTGTTGTTTCGTGTCGATATCTTCTGAAGAGACTGTGACAGAGGTATAACGATTATTCTAAACTTTGGTGAGTTCTTGTCTTTTTCCTTCTTAGTTGTGTTTATTGATGATGATTTCAACTTTAGTGGTTTGTAAGATGTTCAAAATTGGATTTTTGAGCTGAGTTTTGGAAAGGGGCTGGCTAATATGGGTTAATTTAAACATTTAGTTTGAGTTCGAGGTTAGGGTAGAAGGTTAGTTAGTAGTTGTTCCCTTTTCCCAGAGTTTATTCTTTGTCGTTCTTTTTCCTTATTTTTAGATTTCTACCACTACTTGTTGTTTTGCCTTGGTATCTTTTTCCTTGTTTTTAGGTTTACTTGGCACCTGTATTGATTTTGTGGATGTAACATGTTAGGGTGGAGTAGTGGATCAATGGAGGTCCGTGCCCCTACACAATCCTTCTCCTAAAAACAAGTAAAAAGAGGTCACTTTAAGTTTACTTGGAACCTGTATTTCAGTATTTGTGGGTGTAGCAGTTTACCTAGAGGATCTGTCAAGGCTCATACCCTAACATAGCCTTTTCATATATAACAAAGGTTAATTTTAAGTTCAGGTAGTTTTTGTTGGGTATAGTTGTTGTCGTTCTGCCAAATTTTCAAGATTTTTGCCACTTAGTTGTGCTGGGAACTTCTGAGCAATGAATTTTTATAGTTAATTGGTTAAACTTTTTTGTGTCTTTTCACCCCATATTGAGAATTCATTATCTGACTTTTCGCTCCAAATCGAGAATCCGTTGGTCTTTTTATCCCAAATAGAGAGTCCATATTGAGATAATACTGAAATAATTTTGATTTTCAGGTGACTCTTGCTCATCTCAAGGATAAGCCGGCACATGCGCAGCCCCAAGCATCATCAAGTTTTGGTGTGAGTAGTGGTGTTAGGTCAGCTGCAGCAAGGTTCTTAGGTGGAAACGGTAGTAAAACACTTAGTTTTGTTGGAGGAAATGGTGGAGGTAAGTCTATCAGTGGCCTGAGTGGTAGGGTTGGATCATTTGGGGTGTCAAGTTCAAGTAGTTCTGTTGGTAATTCAAATTTTGATGGCAAAGGAACCTATTTAGTGTTCAATGTTGGTGATGCAATTTTTAT</genome_strand>
        <mrna_strand>GAAGAAGAAGAAATAGGTGAAAAAAAGTCAATATCATCCTTCACAAAACACTTGATCTAGAAGCAATTGACACCCTAGAAGATTCATAAACCGATTGTTTAAATGATCTCATAAACCCCATATGTTGAATTTTTGATAGGAACAGA--TTTTTTTTTTTTGATTTTGATTTGGTGAAGAATGATGAATTCTGGGATTAGTAGTAATTCGATGTCGTCTTCATCGGCACCGGGGAATAACAGCAGTAACAACGCACAATCACCTGGTTTGAAGACGTATTTCAAAACCCCAGAAGGAAGATACAAGCTTCAGTATGAGAAGACTCACCCTGCTGGGCTTCTTCATTATGCTCATGGAAAGACTGTAACTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACTCTTGCTCATCTCAAGGATAAGCCGGTGCATGCGCAGCCCCAAGCATCATCAAGTTTTGGTGTGAGCAGTGGTGTTAGGTCAGCTGCAGCAAGGTTCTTAGGTGGAAACGGTAGTAAAACACTTAGTTTTGTTGGAGGAAATGGTGGAGGTAAGTCTATCAGTGGCCTGAGTGGTAGGGTTGGATCATTTGGGGTGTCAAGTTCAAGTAGTTCTGTTGGTAATTCAAATTTTGATGGCAAAGGAACCTATTTAGTGTTCAATGTTGGTGATGCAATTTTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E329206" ref_strand="+" ref_description="SGN-E329206 [cTOD-2-A5]">
      <seq>aacacttgatctagaagcaattgacaccctagaagattcataaaccgattgtttaaatgatctcataaaccccatatgttgaatttttgataggaacagattttttttttttttgattttgatttggtgaagaatgatgaattctgggattagtagtaattcgatgtcgtcttcatcggcaccggggaataacagcagtaacaacgcacaatcacctggtttgaagacgtatttcaaaaccccagaaggaagatacaagcttcagtatgagaagactcaccctgctgggcttcttcattatgctcatggaaagactgtaactcaggtgactcttgctcatctcaaggataagccggcacatgcgcagccccaagcatcatcaagttttggtgtgagtagtggtgttaggtcagctgcagcaaggttcttaggtggaaacggtagtaaaacacttagttttgttggaggaaatggtggaggtaagtctatcagtggcctgagtggtagggttggatcatttggggtgtcaagttcaagtagttctgttggtaattcaaattttgatggcaaaagaacctatttagtgttcaatgttggtgatgcaatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="-" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="78319" stop="75701"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78019" g_stop="77695" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77694" i_stop="76285" i_length="1410">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76284" g_stop="76001" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="609" r_length="284" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="-" ref_id="SGN-E329206" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329206" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78019" e_stop="77695"/>
          <exon e_start="76284" e_stop="76001"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACTTGATCTAGAAGCAATTGACACCCTAGAAGATTCATAAACCGATTGTTTAAATGATCTCATAAACCCCATATGTTGAATTTTTGATAGGAACAGATTTTTTTTTTTTTTGATTTTGATTTGGTGAAGAATGATGAATTCTGGGATTAGTAGTAATTCGATGTCGTCTTCATCGGCACCGGGGAATAACAGCAGTAACAACGCACAATCACCTGGTTTGAAGACGTATTTCAAAACCCCAGAAGGAAGATACAAGCTTCAGTATGAGAAGACTCACCCTGCTGGGCTTCTTCATTATGCTCATGGAAAGACTGTAACTCAGGTATTATAAAGATTAGCTCTTTAGCTTTCGTGGGTAATTGTCTTTTTCGTTCTTAATTGTGTTTATTGATGTTAATTTCAACTTTAGTGGTCTGTAAGATGTTCAAAATTGGATTTTTGAGTTGTGTTTTAGAAGGGGTTAGGCTAATATGGGTTAATTTCAAATATTTAGAATGAGTTTGAAGATTAAGGTAGAAGGCTAGTTAGTAGTTGTTCCCTCGTTTCTTTTCCTTATTTTTCTATGACTACTAATTGTTTTGCTTCGATATTGTCATTATGCTCATGTAGAGATTGTAACACAGGTATAACGATTCACTCTTAAGCTTTGCCGAGTTCTTGTCCTTTTCCTTCTTAATTGCGATTATTGATGTTAATTTCAACTTTAGCAGTTTGTAAGATGTTCTAAACAGGATATTTGAGCTGAGTTTTAGAAGGGGTTTGGCTAATATGGGTTAATTTCAAACATTTAGTGTGTGTTCGAGGGTTAGGGTAGAAGGCTAGTAAGTAGTTGTTTGCTTTTCCGATAGTTTACTATTATTCGTTTCTTTTCTTGCTTTTAGATTTCTATCACTACTTGTTGTTTCGTGTCGATATCTTCTGAAGAGACTGTGACAGAGGTATAACGATTATTCTAAACTTTGGTGAGTTCTTGTCTTTTTCCTTCTTAGTTGTGTTTATTGATGATGATTTCAACTTTAGTGGTTTGTAAGATGTTCAAAATTGGATTTTTGAGCTGAGTTTTGGAAAGGGGCTGGCTAATATGGGTTAATTTAAACATTTAGTTTGAGTTCGAGGTTAGGGTAGAAGGTTAGTTAGTAGTTGTTCCCTTTTCCCAGAGTTTATTCTTTGTCGTTCTTTTTCCTTATTTTTAGATTTCTACCACTACTTGTTGTTTTGCCTTGGTATCTTTTTCCTTGTTTTTAGGTTTACTTGGCACCTGTATTGATTTTGTGGATGTAACATGTTAGGGTGGAGTAGTGGATCAATGGAGGTCCGTGCCCCTACACAATCCTTCTCCTAAAAACAAGTAAAAAGAGGTCACTTTAAGTTTACTTGGAACCTGTATTTCAGTATTTGTGGGTGTAGCAGTTTACCTAGAGGATCTGTCAAGGCTCATACCCTAACATAGCCTTTTCATATATAACAAAGGTTAATTTTAAGTTCAGGTAGTTTTTGTTGGGTATAGTTGTTGTCGTTCTGCCAAATTTTCAAGATTTTTGCCACTTAGTTGTGCTGGGAACTTCTGAGCAATGAATTTTTATAGTTAATTGGTTAAACTTTTTTGTGTCTTTTCACCCCATATTGAGAATTCATTATCTGACTTTTCGCTCCAAATCGAGAATCCGTTGGTCTTTTTATCCCAAATAGAGAGTCCATATTGAGATAATACTGAAATAATTTTGATTTTCAGGTGACTCTTGCTCATCTCAAGGATAAGCCGGCACATGCGCAGCCCCAAGCATCATCAAGTTTTGGTGTGAGTAGTGGTGTTAGGTCAGCTGCAGCAAGGTTCTTAGGTGGAAACGGTAGTAAAACACTTAGTTTTGTTGGAGGAAATGGTGGAGGTAAGTCTATCAGTGGCCTGAGTGGTAGGGTTGGATCATTTGGGGTGTCAAGTTCAAGTAGTTCTGTTGGTAATTCAAATTTTGATGGCAAAGGAACCTATTTAGTGTTCAATGTTGGTGATGCAATTTT</genome_strand>
        <mrna_strand>AACACTTGATCTAGAAGCAATTGACACCCTAGAAGATTCATAAACCGATTGTTTAAATGATCTCATAAACCCCATATGTTGAATTTTTGATAGGAACAGATTTTTTTTTTTTTTGATTTTGATTTGGTGAAGAATGATGAATTCTGGGATTAGTAGTAATTCGATGTCGTCTTCATCGGCACCGGGGAATAACAGCAGTAACAACGCACAATCACCTGGTTTGAAGACGTATTTCAAAACCCCAGAAGGAAGATACAAGCTTCAGTATGAGAAGACTCACCCTGCTGGGCTTCTTCATTATGCTCATGGAAAGACTGTAACTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACTCTTGCTCATCTCAAGGATAAGCCGGCACATGCGCAGCCCCAAGCATCATCAAGTTTTGGTGTGAGTAGTGGTGTTAGGTCAGCTGCAGCAAGGTTCTTAGGTGGAAACGGTAGTAAAACACTTAGTTTTGTTGGAGGAAATGGTGGAGGTAAGTCTATCAGTGGCCTGAGTGGTAGGGTTGGATCATTTGGGGTGTCAAGTTCAAGTAGTTCTGTTGGTAATTCAAATTTTGATGGCAAAAGAACCTATTTAGTGTTCAATGTTGGTGATGCAATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E287008" ref_strand="+" ref_description="SGN-E287008 [cLES-6-B19]">
      <seq>gaagaagaagaaataggtgaaaaaaagtcaatatcatccttcacaaaacacttgatctagaagcaattgacaccctagaagattcataaaccgattgtttaaatgatctcataaaccccatatgttgaatttttgataggaacagattttttttttttgattttgatttggtgaagaatgatgaattctgggattagtagtaattcgatgtcgtcttcatcggcaccggggaataacagcagtaacaacgcacaatcacctggtttgaagacgtatttcaaaaccccagaaggaagatacaagcttcagtatgagaagactcaccctgctgggcttcttcattatgctcatggaaagactgtaactcaggtgactcttgctcatctcaaggataagccggtgcatgcgcagccccaagcatcatcaagttttggtgtgagcagtggtgttaggtcagctgcagcaaggttcttaggtggaaacggtagtaaaacacttagttttgttggaggaaatggtggaggtaagtctatcagtggcctgagtggtagggttggatcatttggggtgtcaagttcaagtagttctgttggtaattcaaattttgatggcaaaggaacctatttagtgttcaatgttggtgatgcaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="-" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="78365" stop="75702"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78065" g_stop="77695" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="369" r_length="369" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77694" i_stop="76285" i_length="1410">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76284" g_stop="76002" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="652" r_length="283" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="-" ref_id="SGN-E287008" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287008" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78065" e_stop="77695"/>
          <exon e_start="76284" e_stop="76002"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAGAAGAAATTGGTGAAAAAAAGTCAATATCATCCTTCACAAAACACTTGATCTAGAAGCAATTGACACCCTAGAAGATTCATAAACCGATTGTTTAAATGATCTCATAAACCCCATATGTTGAATTTTTGATAGGAACAGATTTTTTTTTTTTTTGATTTTGATTTGGTGAAGAATGATGAATTCTGGGATTAGTAGTAATTCGATGTCGTCTTCATCGGCACCGGGGAATAACAGCAGTAACAACGCACAATCACCTGGTTTGAAGACGTATTTCAAAACCCCAGAAGGAAGATACAAGCTTCAGTATGAGAAGACTCACCCTGCTGGGCTTCTTCATTATGCTCATGGAAAGACTGTAACTCAGGTATTATAAAGATTAGCTCTTTAGCTTTCGTGGGTAATTGTCTTTTTCGTTCTTAATTGTGTTTATTGATGTTAATTTCAACTTTAGTGGTCTGTAAGATGTTCAAAATTGGATTTTTGAGTTGTGTTTTAGAAGGGGTTAGGCTAATATGGGTTAATTTCAAATATTTAGAATGAGTTTGAAGATTAAGGTAGAAGGCTAGTTAGTAGTTGTTCCCTCGTTTCTTTTCCTTATTTTTCTATGACTACTAATTGTTTTGCTTCGATATTGTCATTATGCTCATGTAGAGATTGTAACACAGGTATAACGATTCACTCTTAAGCTTTGCCGAGTTCTTGTCCTTTTCCTTCTTAATTGCGATTATTGATGTTAATTTCAACTTTAGCAGTTTGTAAGATGTTCTAAACAGGATATTTGAGCTGAGTTTTAGAAGGGGTTTGGCTAATATGGGTTAATTTCAAACATTTAGTGTGTGTTCGAGGGTTAGGGTAGAAGGCTAGTAAGTAGTTGTTTGCTTTTCCGATAGTTTACTATTATTCGTTTCTTTTCTTGCTTTTAGATTTCTATCACTACTTGTTGTTTCGTGTCGATATCTTCTGAAGAGACTGTGACAGAGGTATAACGATTATTCTAAACTTTGGTGAGTTCTTGTCTTTTTCCTTCTTAGTTGTGTTTATTGATGATGATTTCAACTTTAGTGGTTTGTAAGATGTTCAAAATTGGATTTTTGAGCTGAGTTTTGGAAAGGGGCTGGCTAATATGGGTTAATTTAAACATTTAGTTTGAGTTCGAGGTTAGGGTAGAAGGTTAGTTAGTAGTTGTTCCCTTTTCCCAGAGTTTATTCTTTGTCGTTCTTTTTCCTTATTTTTAGATTTCTACCACTACTTGTTGTTTTGCCTTGGTATCTTTTTCCTTGTTTTTAGGTTTACTTGGCACCTGTATTGATTTTGTGGATGTAACATGTTAGGGTGGAGTAGTGGATCAATGGAGGTCCGTGCCCCTACACAATCCTTCTCCTAAAAACAAGTAAAAAGAGGTCACTTTAAGTTTACTTGGAACCTGTATTTCAGTATTTGTGGGTGTAGCAGTTTACCTAGAGGATCTGTCAAGGCTCATACCCTAACATAGCCTTTTCATATATAACAAAGGTTAATTTTAAGTTCAGGTAGTTTTTGTTGGGTATAGTTGTTGTCGTTCTGCCAAATTTTCAAGATTTTTGCCACTTAGTTGTGCTGGGAACTTCTGAGCAATGAATTTTTATAGTTAATTGGTTAAACTTTTTTGTGTCTTTTCACCCCATATTGAGAATTCATTATCTGACTTTTCGCTCCAAATCGAGAATCCGTTGGTCTTTTTATCCCAAATAGAGAGTCCATATTGAGATAATACTGAAATAATTTTGATTTTCAGGTGACTCTTGCTCATCTCAAGGATAAGCCGGCACATGCGCAGCCCCAAGCATCATCAAGTTTTGGTGTGAGTAGTGGTGTTAGGTCAGCTGCAGCAAGGTTCTTAGGTGGAAACGGTAGTAAAACACTTAGTTTTGTTGGAGGAAATGGTGGAGGTAAGTCTATCAGTGGCCTGAGTGGTAGGGTTGGATCATTTGGGGTGTCAAGTTCAAGTAGTTCTGTTGGTAATTCAAATTTTGATGGCAAAGGAACCTATTTAGTGTTCAATGTTGGTGATGCAATTT</genome_strand>
        <mrna_strand>GAAGAAGAAGAAATAGGTGAAAAAAAGTCAATATCATCCTTCACAAAACACTTGATCTAGAAGCAATTGACACCCTAGAAGATTCATAAACCGATTGTTTAAATGATCTCATAAACCCCATATGTTGAATTTTTGATAGGAACAGA--TTTTTTTTTTTTGATTTTGATTTGGTGAAGAATGATGAATTCTGGGATTAGTAGTAATTCGATGTCGTCTTCATCGGCACCGGGGAATAACAGCAGTAACAACGCACAATCACCTGGTTTGAAGACGTATTTCAAAACCCCAGAAGGAAGATACAAGCTTCAGTATGAGAAGACTCACCCTGCTGGGCTTCTTCATTATGCTCATGGAAAGACTGTAACTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACTCTTGCTCATCTCAAGGATAAGCCGGTGCATGCGCAGCCCCAAGCATCATCAAGTTTTGGTGTGAGCAGTGGTGTTAGGTCAGCTGCAGCAAGGTTCTTAGGTGGAAACGGTAGTAAAACACTTAGTTTTGTTGGAGGAAATGGTGGAGGTAAGTCTATCAGTGGCCTGAGTGGTAGGGTTGGATCATTTGGGGTGTCAAGTTCAAGTAGTTCTGTTGGTAATTCAAATTTTGATGGCAAAGGAACCTATTTAGTGTTCAATGTTGGTGATGCAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E688066" ref_strand="+" ref_description="SGN-E688066 [T3_tus_85_H05]">
      <seq>aaaaaaatgaaacacattttcttgatattgttctttttcttgttgaaatgcattggcattttgtcacaagctccagctccggctccaggtccaccacctccattaaacgtgacaaagatactcgaaaaagcaggtcaatgttcaacgttcatacgtctactacaaaacacacaacaactcaatgaaatcacctcacaactcaacaattccaacaatggaatcacaatgtttgtgccaacagataatgcatttttaaacatgaaagcaggcacgttgaattcgtttaacgatcaacaaaaagctgaacttatccaattccatatccttcctacatactattcactcactcaattccaaactgctagtaaccctttaagaacacaagctggaggaacaacggatagagagttcccgataaatataacaacaactggaagttcagttaacattacaacaggaattgtgaatgcaagtatatcaaatacaatatatactgataaccaattggctatatatcaagtagacaacgttcttcttccgttacaattctttgttcctccagcaccagcaccagcaccaacacctatnacgcgtaaaaggaaagcaggatcctctgactcttcatcaaaacaagatgcttcctctgctacttctctgcttcaagaaatgtacaatgggatgattttcattttcttgttttctactgcatttttttcgagtttataagtatgatgatcatgttagtatttgtgtgtatgtatgcttgtgattctttacctatatttcattgaaaatgaattttgagtgttttcaagaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="-" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="81871" stop="80451"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81571" g_stop="80748" g_length="824"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="824" r_length="824" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="-" ref_id="SGN-E688066" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>824</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688066" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81571" e_stop="80748"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAATGAAACACATTTTCTTGATATTGTTCTTTTTCTTGTTGAAATGCATTGGCATTTTGTCACAAGCTCCAGCTCCGGCTCCAGGTCCACCACCTCCATTAAACGTGACAAAGATACTCGAAAAAGCAGGTCAATGTTCAACGTTCATACGTCTACTACAAAACACACAACAACTCAATGAAATCACCTCACAACTCAACAATTCCAACAATGGAATCACAATGTTTGTGCCAACAGATAATGCATTTTTAAACATGAAAGCAGGCACGTTGAATTCGTTTAACGATCAACAAAAAGCTGAACTTATCCAATTCCATATCCTTCCTACATACTATTCACTCACTCAATTCCAAACTGCTAGTAACCCTTTAAGAACACAAGCTGGAGGAACAACGGATAGAGAGTTCCCGATAAATATAACAACAACTGGAAGTTCAGTTAACATTACAACAGGAATTGTGAATGCAAGTATATCAAATACAATATATACTGATAACCAATTGGCTATATATCAAGTAGACAACGTTCTTCTTCCGTTACAATTCTTTGTTCCTCCAGCACCAGCACCAGCACCAACACCTATAACGCGTAAAAGGAAAGCAGGATCCTCTGACTCTTCATCAAAACAAGATGCTTCCTCTGCTACTTCTCTGCTTCAAGAAATGTACAATGGGATGATTTTCATTTTCTTGTTTTCTACTGCATTTTTTTCGAGTTTATAAGTATGATGATCATGTTAGTATTTGTGTGTATGTATGCTTGTGATTCTTTACCTATATTTCATTGAAAATGAATTTTGAGTGTTTTCAAGAATAGATCT</genome_strand>
        <mrna_strand>AAAAAAATGAAACACATTTTCTTGATATTGTTCTTTTTCTTGTTGAAATGCATTGGCATTTTGTCACAAGCTCCAGCTCCGGCTCCAGGTCCACCACCTCCATTAAACGTGACAAAGATACTCGAAAAAGCAGGTCAATGTTCAACGTTCATACGTCTACTACAAAACACACAACAACTCAATGAAATCACCTCACAACTCAACAATTCCAACAATGGAATCACAATGTTTGTGCCAACAGATAATGCATTTTTAAACATGAAAGCAGGCACGTTGAATTCGTTTAACGATCAACAAAAAGCTGAACTTATCCAATTCCATATCCTTCCTACATACTATTCACTCACTCAATTCCAAACTGCTAGTAACCCTTTAAGAACACAAGCTGGAGGAACAACGGATAGAGAGTTCCCGATAAATATAACAACAACTGGAAGTTCAGTTAACATTACAACAGGAATTGTGAATGCAAGTATATCAAATACAATATATACTGATAACCAATTGGCTATATATCAAGTAGACAACGTTCTTCTTCCGTTACAATTCTTTGTTCCTCCAGCACCAGCACCAGCACCAACACCTATNACGCGTAAAAGGAAAGCAGGATCCTCTGACTCTTCATCAAAACAAGATGCTTCCTCTGCTACTTCTCTGCTTCAAGAAATGTACAATGGGATGATTTTCATTTTCTTGTTTTCTACTGCATTTTTTTCGAGTTTATAAGTATGATGATCATGTTAGTATTTGTGTGTATGTATGCTTGTGATTCTTTACCTATATTTCATTGAAAATGAATTTTGAGTGTTTTCAAGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E334745" ref_strand="+" ref_description="SGN-E334745 [cTOE-3-A2]">
      <seq>aaaaaatgaaacacattttcttgatattgttctttttcttgttgaaatgcattggcattttgtcacaagctccagctccggctccaggtccaccacctccattaaacgtgacaaagatactcgaaaaagcaggtcaatgttcaacgttcatacgtctactacaaaacacacaacaactcaatgaaatcacctcacaactcaacaattccaacaatggaatcacaatgtttgtgccaacagataatgcatttttaaacatgaaagcaggcacgttgaattcgtttaacgatcaacaaaaagctgaacttatccaattccatatccttcctacatactattcactcactcaattccaaactgctagtaaccctttaagaacacaagctggaggaacaacggatagagagttcccgataaatataacaacaactggaagttcagttaacattacaacaggaattgtgaatgcaagtatatcaaatacaatatatactgataaccaattggctatatatcaagtagacaacgttcttcttccgttacaattctttgttcctccagcaccagcaccagcaccaacacctataacgcgtaaaaggaaagcaggatcctctgactcttcatcaaaacaagatgcttcctctgctacttctctgcttcaaaaaatgtacaatgggatgattttcattttcttgttttctactgcatttttttcgagtttattagtatgatgatcatgtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="-" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="81870" stop="80529"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81570" g_stop="80829" g_length="742"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="742" r_length="742" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="-" ref_id="SGN-E334745" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334745" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81570" e_stop="80829"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAATGAAACACATTTTCTTGATATTGTTCTTTTTCTTGTTGAAATGCATTGGCATTTTGTCACAAGCTCCAGCTCCGGCTCCAGGTCCACCACCTCCATTAAACGTGACAAAGATACTCGAAAAAGCAGGTCAATGTTCAACGTTCATACGTCTACTACAAAACACACAACAACTCAATGAAATCACCTCACAACTCAACAATTCCAACAATGGAATCACAATGTTTGTGCCAACAGATAATGCATTTTTAAACATGAAAGCAGGCACGTTGAATTCGTTTAACGATCAACAAAAAGCTGAACTTATCCAATTCCATATCCTTCCTACATACTATTCACTCACTCAATTCCAAACTGCTAGTAACCCTTTAAGAACACAAGCTGGAGGAACAACGGATAGAGAGTTCCCGATAAATATAACAACAACTGGAAGTTCAGTTAACATTACAACAGGAATTGTGAATGCAAGTATATCAAATACAATATATACTGATAACCAATTGGCTATATATCAAGTAGACAACGTTCTTCTTCCGTTACAATTCTTTGTTCCTCCAGCACCAGCACCAGCACCAACACCTATAACGCGTAAAAGGAAAGCAGGATCCTCTGACTCTTCATCAAAACAAGATGCTTCCTCTGCTACTTCTCTGCTTCAAGAAATGTACAATGGGATGATTTTCATTTTCTTGTTTTCTACTGCATTTTTTTCGAGTTTATAAGTATGATGATCATGTTA</genome_strand>
        <mrna_strand>AAAAAATGAAACACATTTTCTTGATATTGTTCTTTTTCTTGTTGAAATGCATTGGCATTTTGTCACAAGCTCCAGCTCCGGCTCCAGGTCCACCACCTCCATTAAACGTGACAAAGATACTCGAAAAAGCAGGTCAATGTTCAACGTTCATACGTCTACTACAAAACACACAACAACTCAATGAAATCACCTCACAACTCAACAATTCCAACAATGGAATCACAATGTTTGTGCCAACAGATAATGCATTTTTAAACATGAAAGCAGGCACGTTGAATTCGTTTAACGATCAACAAAAAGCTGAACTTATCCAATTCCATATCCTTCCTACATACTATTCACTCACTCAATTCCAAACTGCTAGTAACCCTTTAAGAACACAAGCTGGAGGAACAACGGATAGAGAGTTCCCGATAAATATAACAACAACTGGAAGTTCAGTTAACATTACAACAGGAATTGTGAATGCAAGTATATCAAATACAATATATACTGATAACCAATTGGCTATATATCAAGTAGACAACGTTCTTCTTCCGTTACAATTCTTTGTTCCTCCAGCACCAGCACCAGCACCAACACCTATAACGCGTAAAAGGAAAGCAGGATCCTCTGACTCTTCATCAAAACAAGATGCTTCCTCTGCTACTTCTCTGCTTCAAAAAATGTACAATGGGATGATTTTCATTTTCTTGTTTTCTACTGCATTTTTTTCGAGTTTATTAGTATGATGATCATGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E225800" ref_strand="+" ref_description="SGN-E225800 [cLEL-17-A7](-)">
      <seq>ggcacgaggctgcatagcataaagtacagtaggctcttcttatactctgattcccaagaagtttttgctttgcagataccatttttatctcttttttagctttagctttaaggagaatcatttggatcaattaaacagatccattttgtaactttctagctgatgtagttacattcttaaatagtgttattctgaaaccaagtgaagtgattctccataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="-" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="88802" stop="48842"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88511" g_stop="88295" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="216" r_length="216" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88294" i_stop="87942" i_length="353">
            <donor d_prob="0.900" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87941" g_stop="87923" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="235" r_length="19" r_score="0.737"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="-" ref_id="SGN-E225800" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>236</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E225800" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88511" e_stop="88295"/>
          <exon e_start="87941" e_stop="87923"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATGGTTGCTGCATAGCATAAAGTACAGTAGGCTCTTCTTATACTCTGATTCCCAAGAAGTTTTTGCTTTGCAGATACCATTTTTATCTCTTTTTTAGCTTTAGCTTTAAGGAGAATCATTTGGATCAATTAAACAGATCCATTTTGTAACTTTCTAGCTGATGTAGTTACATTCTTAAATAGTGTTATTCTGAAACCAAGTGAAGTGATTCTAAATATCCTGTTATAATTTTAGGATAATGTACTATTATGTGTCAAACTTACAGGTAAGTTTTTTGATAATTTTTAGAACTTTTAGACTGAAAGTCATGTTTCAAGTTTTTCCTGAAGTATCAAGTCATGTTTCATTTTCTTCAAACAAAGAAAAAGAGGAGCTGACATGTTTTCAAAAATTATGGTCAAATATATTTTGAAAATTCAATAAACTTCTAAGCTGTCACATTTTAAATAAAGATATGTATTTATTGGACAAGTAAAAGTGCTGTAAACTTCGTAGCAATTAAAAAGAAGATATCTATTTATTGGACAAGTAAAAGTGCTGGAAACTTTATAGCAATATAAAATGTACATAACAAGGACAAAAATAA</genome_strand>
        <mrna_strand>GGCA-CGAGGCTGCATAGCATAAAGTACAGTAGGCTCTTCTTATACTCTGATTCCCAAGAAGTTTTTGCTTTGCAGATACCATTTTTATCTCTTTTTTAGCTTTAGCTTTAAGGAGAATCATTTGGATCAATTAAACAGATCCATTTTGTAACTTTCTAGCTGATGTAGTTACATTCTTAAATAGTGTTATTCTGAAACCAAGTGAAGTGATTCTCC.................................................................................................................................................................................................................................................................................................................................................................ATAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E257234" ref_strand="+" ref_description="SGN-E257234 [cLEG-46-P24]">
      <seq>cctggcgttggaccccaaccattctgcacataatgtaaatcttcatcttggtttgtgcaaagtcttggtaaagcttggaagggggaaggatgctatatcaagctgttcagaagcccttgaacttgatggagagcttatcgatgctctagtgcagaggggtgaagccaagcttctaacagaagattgggagggagctgttgcagatttgaaagaagcagctgaaaaatctcctcaggataggaatattcgtgaagtgctgatgagggctgagagatcattaaaattaagtaaacggaaggattggtataagatattgggagtgtcaaagacatcatctgtatcagagataaaaaaggcatacaaaaagcttgcgctgcaatggcaccctgacaagaacgttgacaacagagaagaagctgaagaaaagtttcgtgaaatagcagctgcatatgaggttctcggggatgaggaaaaacgtacacgatatgaccaaggggaagacattgaagacatgggttcagggatgggtggtggaggattcaacccattcggtggaggatttggtggaggatttggcggaggagggcagcagtacacattccactttgaaggaggatttccaggtggaggcgggggaaggggggatttggcggatttcatttttgacctccatggcgttcgtttatactcctctcatggttgctgcatagcataaagtacagtaggctcttcttatactctgatttcccagaaatttttgctttgcagataccatttttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="-" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="90537" stop="88123"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90237" g_stop="90084" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90083" i_stop="89930" i_length="154">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89929" g_stop="89849" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="235" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89848" i_stop="89211" i_length="638">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89210" g_stop="88992" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="454" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88991" i_stop="88748" i_length="244">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88747" g_stop="88423" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="781" r_length="327" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="-" ref_id="SGN-E257234" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>779</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257234" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90237" e_stop="90084"/>
          <exon e_start="89929" e_stop="89849"/>
          <exon e_start="89210" e_stop="88992"/>
          <exon e_start="88747" e_stop="88423"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGGCGTTGGACCCCAACCATTCTGCACATAATGTAAATCTTCATCTTGGTTTGTGCAAAGTCTTGGTAAAGCTTGGAAGGGGGAAGGATGCTATATCAAGCTGTTCAGAAGCCCTTGAACTTGATGGAGAGCTTATCGATGCTCTAGTGCAGGTTCAATCTCTATCTGCTTTCTACTTTTTTCGACCTTCAAATAGTCAATGACATTAGGATGACTGAATTCTATTAGACCAATTGTCTGCTTAGAAATATCTAGTTTACACCATAAAGAATCTTGAATCATTTAGTTGGACATTTTTTTTTACAGAGGGGTGAAGCCAAGCTTCTAACAGAAGATTGGGAGGGAGCTGTTGCAGATTTGAAAGAAGCAGCTGAAAAATCTCCTCAGGTCTGTTGGCAACTTTTTTCTTTGGTTTTATTTGTTTATATTTTTCGCTGTTTAAACCTTTCTTCATGTAGTAATATTGCATCGAAGATGCGAGAAGACATTGGCATGACAACTCAATCATGCCATCACATTGTGCATATATGATATAATGTCCTTTTTTTTGAGGGGGTGGGATGGGTTTGAGTTTTGCATGTAAGAAGGATTAGATTTTGCGAATTTCGTGATAGCCATGACTAGTGGCGGAGCCAGGATTTTTTTACTAAGAATCTATATACCAAAAAGTCGACATATGAAAAGGAAAAGGAAAAAAAAATCAGGATTCAGTCTCCCAAGTTGAAGTGAGGTCCTTCCTTTTGACTCAAACTTGCTTTGCCACTAGGCATGACCAAAAAGTCGACATATGAAAAGGAAAAGGAAAAAAAAAATCAGGATTCAGTCTCCCAAGTCGAAGTGAGGTCCTTCCTTTTGACTTAAACCAAGTTTGCGGGGTTTTTGTTCAAGCAATTTGTTGTTGCTTGTCTTTTTTTTTTTTGCATAGAAAACCATCTATAATGTGTGCTCGTGCTTGATCGTTTTTGTCAAGGTTATTGTTTTAGCTTTGATCTGGATATCAAATAATCTGAAGTACACTTCTATAGGATAGGAATATTCGTGAAGTGCTGATGAGGGCTGAGAGATCATTAAAATTAAGTAAACGGAAGGATTGGTATAAGATATTGGGAGTGTCAAAGACATCATCTGTATCAGAGATAAAAAAGGCATACAAAAAGCTTGCGCTGCAATGGCACCCTGACAAGAACGTTGACAACAGAGAAGAAGCTGAAGAAAAGTTTCGTGAAATAGCAGCTGCATATGAGGTTTGTTTTTGTTTTTTCTTTTCGATCATTTTTCGTTTGAGCTGTTGAGTTCTTTTTTGGTTTTGCAATCGTCTCAAGTATTTGGCCGCTACAGCAAAATGTTGTAATAGAAAACATAGAGCATAACATAAAAGATCCGTAGCACATAAAACATAGTTGTTATAGTGAAATATTGTATTAGAGGATATGACTGTTAAAGAAAATTCTGACTGTTTTTGTCTGAATGTTACGTATCTCTAAACAGGTTCTCGGGGATGAGGAAAAACGTACACGATATGACCAAGGGGAAGACATTGAAGACATGGGTTCAGGGATGGGTGGTGGAGGATTCAACCCATTCGGTGGAGGATTTGGTGGAGGATTTGGCGGAGGAGGGCAGCAGTACACATTCCACTTTGAAGGAGGATTTCCAGGTGGAGGCGGGGG-A-GGGGGATTTGGCGGATTTCATTTTTGACCTCCATGGCGTTCGTTTATACTCCTCTCATGGTTGCTGCATAGCATAAAGTACAGTAGGCTCTTCTTATACTCTGATTCCCAAGAAGTTTTTGCTTTGCAGATACCATTTTTAT</genome_strand>
        <mrna_strand>CCTGGCGTTGGACCCCAACCATTCTGCACATAATGTAAATCTTCATCTTGGTTTGTGCAAAGTCTTGGTAAAGCTTGGAAGGGGGAAGGATGCTATATCAAGCTGTTCAGAAGCCCTTGAACTTGATGGAGAGCTTATCGATGCTCTAGTGCAG..........................................................................................................................................................AGGGGTGAAGCCAAGCTTCTAACAGAAGATTGGGAGGGAGCTGTTGCAGATTTGAAAGAAGCAGCTGAAAAATCTCCTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAGGAATATTCGTGAAGTGCTGATGAGGGCTGAGAGATCATTAAAATTAAGTAAACGGAAGGATTGGTATAAGATATTGGGAGTGTCAAAGACATCATCTGTATCAGAGATAAAAAAGGCATACAAAAAGCTTGCGCTGCAATGGCACCCTGACAAGAACGTTGACAACAGAGAAGAAGCTGAAGAAAAGTTTCGTGAAATAGCAGCTGCATATGAG....................................................................................................................................................................................................................................................GTTCTCGGGGATGAGGAAAAACGTACACGATATGACCAAGGGGAAGACATTGAAGACATGGGTTCAGGGATGGGTGGTGGAGGATTCAACCCATTCGGTGGAGGATTTGGTGGAGGATTTGGCGGAGGAGGGCAGCAGTACACATTCCACTTTGAAGGAGGATTTCCAGGTGGAGGCGGGGGAAGGGGGGATTTGGCGGATTTCATTTTTGACCTCCATGGCGTTCGTTTATACTCCTCTCATGGTTGCTGCATAGCATAAAGTACAGTAGGCTCTTCTTATACTCTGATTTCCCAGAAATTTTTGCTTTGCAGATACCATTTTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E747520" ref_strand="+" ref_description="SGN-E747520 [GI|32395915]">
      <seq>atgatggagccattgatgaagatatggagctttgatcttgtggcatggaggggtttcttgttttcagcattgatacttaactttatattcgcttgccaactctttttccttcaaccccttgtatctgctttagacgccaaacctggtgatgctgctgcattgtttgagagagttgcacaaaatgtaaaagttaagaaatacagtgaggcacttaatgatctaaattcagccatagaggcagacccaacactttcagaggcgtattggcaccgtgcatctctccttcgtcagttgtgcagatatgaggaatcggaaaaaagctacaaaaagtttctggagatgaaaccaagagactcagctgcagagaaggagctttctcagatgcaccaagctaagagtgctcttgattcagctaccaacctgttggacacggatgacattaaaaaagcgttggagtatattgataaagtcgtactagttttctctccagcatgctccaaggccaaactccttaaggtgaagctattgctagcagataaagattattcaggtgtcatatccgaggcaggatttatacttaaagaggatgaggataatctggaggctttacttctacgaggccgtgcctactactatctggctgatcatgatgtatccttacggcactaccaaaaaggtcttcgttcagacccagagcacggggaattgaagaaagcctattttggcttgaaaaacttacttaaaaaaactaaaagcgcagacgataacgtaagtaagggtaaatttcgtcttgctgtggaggagtacaaagcagccctggcgttggaccccaaccattctgcacataatataaatcttcatcttggtttgtgcaaagtcttggtaaagcttggaagggggaaggatgctatatcaagctgttcagaagcccttgaacttgatggagagcttatcgatgctctagtgcagaggggtgaagccaagcttctaacagaagattgggagggagctgttgcagatttgaaagaagcagctgaaaaatctcctcaggataggaatattcgtgaagtgctgatgagggctgagagatcattaaaattaagtaaacggaaggattggtataagatattgggagtgtcaaagacatcatctgtatcagagataaaaaaggcatacaaaaagcttgcgctgcaatggcaccctgacaagaacgttgacaacagagaagaagctgaagaaaagtttcgtgaaatagcagctgcatatgaggttctcggggatgaggaaaaacgtacacgatatgaccaaggggaagacattgaagacatgggttcagggatgggtggtggaggattcaacccattcggtggaggatttggtggaggatttggcggaggagggcagcagtacacattccactttgaaggaggatttccaggtggaggcgggggagggggatttggcggatttcatttttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="-" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="93761" stop="88238"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93461" g_stop="93329" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93328" i_stop="92082" i_length="1247">
            <donor d_prob="0.910" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92081" g_stop="91916" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="299" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91915" i_stop="91383" i_length="533">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91382" g_stop="91181" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="501" r_length="202" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91180" i_stop="91093" i_length="88">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91092" g_stop="90932" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="662" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90931" i_stop="90809" i_length="123">
            <donor d_prob="0.866" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90808" g_stop="90715" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="663" r_stop="756" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="90714" i_stop="90297" i_length="418">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.828" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="90296" g_stop="90084" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="757" r_stop="969" r_length="213" r_score="0.995"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="90083" i_stop="89930" i_length="154">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="89929" g_stop="89849" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="970" r_stop="1050" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="89848" i_stop="89211" i_length="638">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="89210" g_stop="88992" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1051" r_stop="1269" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="88991" i_stop="88748" i_length="244">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="88747" g_stop="88538" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1270" r_stop="1479" r_length="210" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="-" ref_id="SGN-E747520" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1479</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E747520" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93461" e_stop="93329"/>
          <exon e_start="92081" e_stop="91916"/>
          <exon e_start="91382" e_stop="91181"/>
          <exon e_start="91092" e_stop="90932"/>
          <exon e_start="90808" e_stop="90715"/>
          <exon e_start="90296" e_stop="90084"/>
          <exon e_start="89929" e_stop="89849"/>
          <exon e_start="89210" e_stop="88992"/>
          <exon e_start="88747" e_stop="88538"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATGGAGCCATTGATGAAGATATGGAGCTTTGATCTTGTGGCATGGAGGGGTTTCTTGTTTTCAGCATTGATACTTAACTTTATATTCGCTTGCCAACTCTTTTTCCTTCAACCCCTTGTATCTGCTTTAGGTAAAGATCAAATTTTTATGACTATTTTTGTTTGATTTTGATTTGGGGTTTTCGATTTTTATGTTAGCTGTAAATTTGGGTTACTCAGATTTGTTTGATTTTTAATAGTGACAGTTGATTTGGGGATTTTTAACAGATTTGAGCTTCGTGGTAAGGGAATTTGTTTACATTGTAGAGGTTTCTGATTTTGAGCAAAATCTTGAATGCATATTGCTGTTGTATATGAGTTGGTGAATCCATTTGTGTCTAATTTCTACTTGGGAAGTGTAAAGATCATAACTTTAATTGTTGAAAGAAATTAGTAGTGAAGAAGAACTTTTTTCGCGATGAATAGGCGTATTGCTAGGCAATATGAGACTGAGGAAGTAGTTTTTGCTGTTCTTTTTGAGGTGGGGTGTCAATTAACCTCAAAGATTTGTATCCTTTATGTTCTTTTTAATGTTGATAATGAGGATGTGAGACACCAATTTAGGCGACCGTTTCAATTTGTTTGTCTAGCATAGAGTTTGTATTAAATTACAGATATGTACCAAAATACTCTTTAATGTTGTAGTCTTAAACCTGTAATGTGGAAAGTTAGAACTAGAGAATTGCCAAAAAAGAAAAAAGACAGTCTCTTTTAAATGGAGTAAAAGGTGGAAAGTAAGGCAAACAAATTGGAATGGAGGGAGTAATAAAAACTTAGACAGAAGGGTCAACTGTGCCAATCTTAGGTCCTGCTGTAGTGAGTGAGAACTATATCTGGAGAACTGATGAAACAGGGTTATTCTCTTTAAATTTGTTGTTGAACGTGTCTTGAGTGAGCAGTTGTTTGCAATGAGGAATGATCTGCGGAATCATGCTCCTGTTAATATCTATAGCTTGATTCAAATTATCACATCTGGAGCTTTACCTAGAAATTTCCGAGAGCCGTAATACTGTTTTTGGATGAGAAAAATTGTTTCTTATTATTTAAATCGAGCTCCCGCTAGCATCAAGTAATGTAAAGTGCATCTTGACGAAGGACACTGTTAATTGTTTCATAGAAAGGGCGTTCAATGCTGATTTATGATGTGTCTATGCTCCCCTCTCCAATTGTTGCTGTTATGATGAAGGGTTAATCTTCATTTAAGTGATGAAACGCGAGGGTTTTCTTTATTAATGTAGTTAGGAAATACAAACGAAGTATGCTTTATAGTGTTCTCTTGTCTTGTAATTGAAGTGGCACTTATTGTTCTCCTGATACATTTGCTACTCTTGATGTGTAGACGCCAAACCTGGTGATGCTGCTGCATTGTTTGAGAGAGTTGCACAAAATGTAAAAGTTAAGAAATACAGTGAGGCACTTAATGATCTAAATTCAGCCATAGAGGCAGACCCAACACTTTCAGAGGCGTATTGGCACCGTGCATCTCTCCTTCGTCAGTTGTGCAGGTTGAAATCAATTTTCCTTTTGTTTTTCTTGTACCAGCTCTAGTATCATGTATGTCTTGATTCTTAGTGAAGGTCTTCCTGATATAAGCTTTTGTACCTCTTCATTTCATTGGCAACTTGCTTGAGTAATTTACTATCTCAAATACTATTTGCTTCTTTTCTTTTTTTTTGATAAACTGAGGCAAGCTTTCGTGCTCTTCGACTAATTCCATGGGATACCTGGTACCTCCCACTAGGTAGCAGATAACTCTATCACCAAGGCCAGGACAGATGGAAAGAATCACCTAGTGTTTTTTTGTCTCTGCTGGGATTTGGACCTGAGACCTCATGTTTACAACCCACTTCATTGACAAGTACGCCACACCCTTGGGTGTTGTGGGTTATTTACTTTTGCATGGTGCATAAATGCATCTGTTATCCACAAGTCTTGTTTCTGATTAATTAGTATTCAAGCATGTTGGGCCTTGTCTCTACTGGTAAACTCTGATGTGAAAAATTTGTAATTTATCCTAATATTTTTTGGACTAATGTAGATATGAGGAATCGGAAAAAAGCTACAAAAAGTTTCTGGAGATGAAACCAAGAGACTCAGCTGCAGAGAAGGAGCTTTCTCAGATGCACCAAGCTAAGAGTGCTCTTGATTCAGCTACCAACCTGTTGGACACGGATGACATTAAAAAAGCGTTGGAGTATATTGATAAAGTCGTACTAGTTTTCTCTCCAGCATGCTCCAAGGTATTCAATTTTGTACTATTGATGTAACTTCATGTGTAACCATTAAGTGTTACACCTATGATGATGTCTTTTACATGTGAATTTCTAGGCCAAACTCCTTAAGGTGAAGCTATTGCTAGCAGATAAAGATTATTCAGGTGTCATATCCGAGGCAGGATTTATACTTAAAGAGGATGAGGATAATCTGGAGGCTTTACTTCTACGAGGCCGTGCCTACTACTATCTGGCTGATCATGATGTATCCTTACGGTATGCCTTACGAAATCTATCAATTTGGTCCACTATTTCCTGCCTCCCACTACACCAATCCATGAAAAAGGTAGCATAAAGGTGTAAAGAGAGCCTAAAGAAGCCTTTTTGTGCTCTTTGCAGGCACTACCAAAAAGGTCTTCGTTCAGACCCAGAGCACGGGGAATTGAAGAAAGCCTATTTTGGCTTGAAAAACTTACTTAAAAAAACTAAAAGCGTAAGCCTTACTTACTATTTTTCCCTACAGCTTGTTTGGAGGATTGTTACATATCATTTCATAATATATATTATTGTACTCTGTTGTTTTGATGCATACAACATTTTGGATTAAAAGAAAAGGGGTAACGACTCGACCACACCAAATGGGCTGTTGCATATAATGGAAATTAGATTTATCGATACGATACAATAATATTCAAGTAACATTAGACATACAGTGTATTTAAACTATTTCAGCATCTTCTTGATGCCCATTAATGAACAACTTCACAAGAAAAAACGTTGTATTTAAACTAAAATACAATACAATTGGTAGCAACCATCTAAACAAGCTTTAACTACAATCCTTTATCCTGTTGCTATATCTCCAAGATATGTTACAATGTGAGCTTCTCAAACCCCAAACTTTTGTGCAGGCAGACGATAACGTAAGTAAGGGTAAATTTCGTCTTGCTGTGGAGGAGTACAAAGCAGCCCTGGCGTTGGACCCCAACCATTCTGCACATAATGTAAATCTTCATCTTGGTTTGTGCAAAGTCTTGGTAAAGCTTGGAAGGGGGAAGGATGCTATATCAAGCTGTTCAGAAGCCCTTGAACTTGATGGAGAGCTTATCGATGCTCTAGTGCAGGTTCAATCTCTATCTGCTTTCTACTTTTTTCGACCTTCAAATAGTCAATGACATTAGGATGACTGAATTCTATTAGACCAATTGTCTGCTTAGAAATATCTAGTTTACACCATAAAGAATCTTGAATCATTTAGTTGGACATTTTTTTTTACAGAGGGGTGAAGCCAAGCTTCTAACAGAAGATTGGGAGGGAGCTGTTGCAGATTTGAAAGAAGCAGCTGAAAAATCTCCTCAGGTCTGTTGGCAACTTTTTTCTTTGGTTTTATTTGTTTATATTTTTCGCTGTTTAAACCTTTCTTCATGTAGTAATATTGCATCGAAGATGCGAGAAGACATTGGCATGACAACTCAATCATGCCATCACATTGTGCATATATGATATAATGTCCTTTTTTTTGAGGGGGTGGGATGGGTTTGAGTTTTGCATGTAAGAAGGATTAGATTTTGCGAATTTCGTGATAGCCATGACTAGTGGCGGAGCCAGGATTTTTTTACTAAGAATCTATATACCAAAAAGTCGACATATGAAAAGGAAAAGGAAAAAAAAATCAGGATTCAGTCTCCCAAGTTGAAGTGAGGTCCTTCCTTTTGACTCAAACTTGCTTTGCCACTAGGCATGACCAAAAAGTCGACATATGAAAAGGAAAAGGAAAAAAAAAATCAGGATTCAGTCTCCCAAGTCGAAGTGAGGTCCTTCCTTTTGACTTAAACCAAGTTTGCGGGGTTTTTGTTCAAGCAATTTGTTGTTGCTTGTCTTTTTTTTTTTTGCATAGAAAACCATCTATAATGTGTGCTCGTGCTTGATCGTTTTTGTCAAGGTTATTGTTTTAGCTTTGATCTGGATATCAAATAATCTGAAGTACACTTCTATAGGATAGGAATATTCGTGAAGTGCTGATGAGGGCTGAGAGATCATTAAAATTAAGTAAACGGAAGGATTGGTATAAGATATTGGGAGTGTCAAAGACATCATCTGTATCAGAGATAAAAAAGGCATACAAAAAGCTTGCGCTGCAATGGCACCCTGACAAGAACGTTGACAACAGAGAAGAAGCTGAAGAAAAGTTTCGTGAAATAGCAGCTGCATATGAGGTTTGTTTTTGTTTTTTCTTTTCGATCATTTTTCGTTTGAGCTGTTGAGTTCTTTTTTGGTTTTGCAATCGTCTCAAGTATTTGGCCGCTACAGCAAAATGTTGTAATAGAAAACATAGAGCATAACATAAAAGATCCGTAGCACATAAAACATAGTTGTTATAGTGAAATATTGTATTAGAGGATATGACTGTTAAAGAAAATTCTGACTGTTTTTGTCTGAATGTTACGTATCTCTAAACAGGTTCTCGGGGATGAGGAAAAACGTACACGATATGACCAAGGGGAAGACATTGAAGACATGGGTTCAGGGATGGGTGGTGGAGGATTCAACCCATTCGGTGGAGGATTTGGTGGAGGATTTGGCGGAGGAGGGCAGCAGTACACATTCCACTTTGAAGGAGGATTTCCAGGTGGAGGCGGGGGAGGGGGATTTGGCGGATTTCATTTTTGA</genome_strand>
        <mrna_strand>ATGATGGAGCCATTGATGAAGATATGGAGCTTTGATCTTGTGGCATGGAGGGGTTTCTTGTTTTCAGCATTGATACTTAACTTTATATTCGCTTGCCAACTCTTTTTCCTTCAACCCCTTGTATCTGCTTTAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGCCAAACCTGGTGATGCTGCTGCATTGTTTGAGAGAGTTGCACAAAATGTAAAAGTTAAGAAATACAGTGAGGCACTTAATGATCTAAATTCAGCCATAGAGGCAGACCCAACACTTTCAGAGGCGTATTGGCACCGTGCATCTCTCCTTCGTCAGTTGTGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGAGGAATCGGAAAAAAGCTACAAAAAGTTTCTGGAGATGAAACCAAGAGACTCAGCTGCAGAGAAGGAGCTTTCTCAGATGCACCAAGCTAAGAGTGCTCTTGATTCAGCTACCAACCTGTTGGACACGGATGACATTAAAAAAGCGTTGGAGTATATTGATAAAGTCGTACTAGTTTTCTCTCCAGCATGCTCCAAG........................................................................................GCCAAACTCCTTAAGGTGAAGCTATTGCTAGCAGATAAAGATTATTCAGGTGTCATATCCGAGGCAGGATTTATACTTAAAGAGGATGAGGATAATCTGGAGGCTTTACTTCTACGAGGCCGTGCCTACTACTATCTGGCTGATCATGATGTATCCTTACG...........................................................................................................................GCACTACCAAAAAGGTCTTCGTTCAGACCCAGAGCACGGGGAATTGAAGAAAGCCTATTTTGGCTTGAAAAACTTACTTAAAAAAACTAAAAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGACGATAACGTAAGTAAGGGTAAATTTCGTCTTGCTGTGGAGGAGTACAAAGCAGCCCTGGCGTTGGACCCCAACCATTCTGCACATAATATAAATCTTCATCTTGGTTTGTGCAAAGTCTTGGTAAAGCTTGGAAGGGGGAAGGATGCTATATCAAGCTGTTCAGAAGCCCTTGAACTTGATGGAGAGCTTATCGATGCTCTAGTGCAG..........................................................................................................................................................AGGGGTGAAGCCAAGCTTCTAACAGAAGATTGGGAGGGAGCTGTTGCAGATTTGAAAGAAGCAGCTGAAAAATCTCCTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAGGAATATTCGTGAAGTGCTGATGAGGGCTGAGAGATCATTAAAATTAAGTAAACGGAAGGATTGGTATAAGATATTGGGAGTGTCAAAGACATCATCTGTATCAGAGATAAAAAAGGCATACAAAAAGCTTGCGCTGCAATGGCACCCTGACAAGAACGTTGACAACAGAGAAGAAGCTGAAGAAAAGTTTCGTGAAATAGCAGCTGCATATGAG....................................................................................................................................................................................................................................................GTTCTCGGGGATGAGGAAAAACGTACACGATATGACCAAGGGGAAGACATTGAAGACATGGGTTCAGGGATGGGTGGTGGAGGATTCAACCCATTCGGTGGAGGATTTGGTGGAGGATTTGGCGGAGGAGGGCAGCAGTACACATTCCACTTTGAAGGAGGATTTCCAGGTGGAGGCGGGGGAGGGGGATTTGGCGGATTTCATTTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E551017" ref_strand="+" ref_description="SGN-E551017 [TUS-54-N11]">
      <seq>ccaaccattctgcacataaagtaaatcttcctcttgatttgtgcaaagtcttggtaaagcttggaagggggaaggatgctatatcaagctgttcagaagcccttgaacttgatggagagcttatcgatgctctagtgcagaggggtgaaaccaagcttctaacataagattgggagggagctgttgcagatttgaaagaagcagctgaaaaatctcctcaggataggaatattcgtgaagtgctgatgagggctgatagatcattaaaattaagtaaacggaaggattggtataagatattgggagtgtcaaagacatcatctgtatcatagataaaaaaggcatacaaaaagcttgcactgcaatggcaccctgacaagaacgttgacaacagagaataagctgaagaaaagtttcgtgaaatagcagctgcatatgaggttctcggggatgaggacaaacgtacacgatatgaccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="-" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="90523" stop="88409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90223" g_stop="90084" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90083" i_stop="89930" i_length="154">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89929" g_stop="89849" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="221" r_length="81" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89848" i_stop="89211" i_length="638">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89210" g_stop="88992" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="440" r_length="219" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88991" i_stop="88748" i_length="244">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88747" g_stop="88709" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="479" r_length="39" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="-" ref_id="SGN-E551017" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E551017" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90223" e_stop="90084"/>
          <exon e_start="89929" e_stop="89849"/>
          <exon e_start="89210" e_stop="88992"/>
          <exon e_start="88747" e_stop="88709"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAACCATTCTGCACATAATGTAAATCTTCATCTTGGTTTGTGCAAAGTCTTGGTAAAGCTTGGAAGGGGGAAGGATGCTATATCAAGCTGTTCAGAAGCCCTTGAACTTGATGGAGAGCTTATCGATGCTCTAGTGCAGGTTCAATCTCTATCTGCTTTCTACTTTTTTCGACCTTCAAATAGTCAATGACATTAGGATGACTGAATTCTATTAGACCAATTGTCTGCTTAGAAATATCTAGTTTACACCATAAAGAATCTTGAATCATTTAGTTGGACATTTTTTTTTACAGAGGGGTGAAGCCAAGCTTCTAACAGAAGATTGGGAGGGAGCTGTTGCAGATTTGAAAGAAGCAGCTGAAAAATCTCCTCAGGTCTGTTGGCAACTTTTTTCTTTGGTTTTATTTGTTTATATTTTTCGCTGTTTAAACCTTTCTTCATGTAGTAATATTGCATCGAAGATGCGAGAAGACATTGGCATGACAACTCAATCATGCCATCACATTGTGCATATATGATATAATGTCCTTTTTTTTGAGGGGGTGGGATGGGTTTGAGTTTTGCATGTAAGAAGGATTAGATTTTGCGAATTTCGTGATAGCCATGACTAGTGGCGGAGCCAGGATTTTTTTACTAAGAATCTATATACCAAAAAGTCGACATATGAAAAGGAAAAGGAAAAAAAAATCAGGATTCAGTCTCCCAAGTTGAAGTGAGGTCCTTCCTTTTGACTCAAACTTGCTTTGCCACTAGGCATGACCAAAAAGTCGACATATGAAAAGGAAAAGGAAAAAAAAAATCAGGATTCAGTCTCCCAAGTCGAAGTGAGGTCCTTCCTTTTGACTTAAACCAAGTTTGCGGGGTTTTTGTTCAAGCAATTTGTTGTTGCTTGTCTTTTTTTTTTTTGCATAGAAAACCATCTATAATGTGTGCTCGTGCTTGATCGTTTTTGTCAAGGTTATTGTTTTAGCTTTGATCTGGATATCAAATAATCTGAAGTACACTTCTATAGGATAGGAATATTCGTGAAGTGCTGATGAGGGCTGAGAGATCATTAAAATTAAGTAAACGGAAGGATTGGTATAAGATATTGGGAGTGTCAAAGACATCATCTGTATCAGAGATAAAAAAGGCATACAAAAAGCTTGCGCTGCAATGGCACCCTGACAAGAACGTTGACAACAGAGAAGAAGCTGAAGAAAAGTTTCGTGAAATAGCAGCTGCATATGAGGTTTGTTTTTGTTTTTTCTTTTCGATCATTTTTCGTTTGAGCTGTTGAGTTCTTTTTTGGTTTTGCAATCGTCTCAAGTATTTGGCCGCTACAGCAAAATGTTGTAATAGAAAACATAGAGCATAACATAAAAGATCCGTAGCACATAAAACATAGTTGTTATAGTGAAATATTGTATTAGAGGATATGACTGTTAAAGAAAATTCTGACTGTTTTTGTCTGAATGTTACGTATCTCTAAACAGGTTCTCGGGGATGAGGAAAAACGTACACGATATGACCAA</genome_strand>
        <mrna_strand>CCAACCATTCTGCACATAAAGTAAATCTTCCTCTTGATTTGTGCAAAGTCTTGGTAAAGCTTGGAAGGGGGAAGGATGCTATATCAAGCTGTTCAGAAGCCCTTGAACTTGATGGAGAGCTTATCGATGCTCTAGTGCAG..........................................................................................................................................................AGGGGTGAAACCAAGCTTCTAACATAAGATTGGGAGGGAGCTGTTGCAGATTTGAAAGAAGCAGCTGAAAAATCTCCTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAGGAATATTCGTGAAGTGCTGATGAGGGCTGATAGATCATTAAAATTAAGTAAACGGAAGGATTGGTATAAGATATTGGGAGTGTCAAAGACATCATCTGTATCATAGATAAAAAAGGCATACAAAAAGCTTGCACTGCAATGGCACCCTGACAAGAACGTTGACAACAGAGAATAAGCTGAAGAAAAGTTTCGTGAAATAGCAGCTGCATATGAG....................................................................................................................................................................................................................................................GTTCTCGGGGATGAGGACAAACGTACACGATATGACCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E688791" ref_strand="+" ref_description="SGN-E688791 [t3_tus_54_N11]">
      <seq>ccaaccattctgcacataaagtaaatcttcatcttgatttgtgcaaagtcttggtaaagcttggaagggggaaggatgctatatcaagctgttcagaagcccttgaacttgatggagagcttatcgatgctctagtgcagaggggtgaaaccaagcttctaacataagattgggagggagctgttgcagatttgaaagaagcagctgaaaaatctcctcaggataggaatattcgtgaagtgctgatgagggctgatagatcattaaaattaagtaaacggaaggattggtataagatattgggagtgtcaaagacatcatctgtatcatagataaaaaaggcatacaaaaagcttgcactgcaatggcaccctgacaagaacgttgacaacagagaataagctgaagaaaagtttcgtgaaatagcagctgcatatgatgttctcggggatgaggacaaacgtacacgatatgacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="-" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="90523" stop="88410"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90223" g_stop="90084" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90083" i_stop="89930" i_length="154">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89929" g_stop="89849" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="221" r_length="81" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89848" i_stop="89211" i_length="638">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89210" g_stop="88992" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="440" r_length="219" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88991" i_stop="88748" i_length="244">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88747" g_stop="88710" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="478" r_length="38" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="-" ref_id="SGN-E688791" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688791" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90223" e_stop="90084"/>
          <exon e_start="89929" e_stop="89849"/>
          <exon e_start="89210" e_stop="88992"/>
          <exon e_start="88747" e_stop="88710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAACCATTCTGCACATAATGTAAATCTTCATCTTGGTTTGTGCAAAGTCTTGGTAAAGCTTGGAAGGGGGAAGGATGCTATATCAAGCTGTTCAGAAGCCCTTGAACTTGATGGAGAGCTTATCGATGCTCTAGTGCAGGTTCAATCTCTATCTGCTTTCTACTTTTTTCGACCTTCAAATAGTCAATGACATTAGGATGACTGAATTCTATTAGACCAATTGTCTGCTTAGAAATATCTAGTTTACACCATAAAGAATCTTGAATCATTTAGTTGGACATTTTTTTTTACAGAGGGGTGAAGCCAAGCTTCTAACAGAAGATTGGGAGGGAGCTGTTGCAGATTTGAAAGAAGCAGCTGAAAAATCTCCTCAGGTCTGTTGGCAACTTTTTTCTTTGGTTTTATTTGTTTATATTTTTCGCTGTTTAAACCTTTCTTCATGTAGTAATATTGCATCGAAGATGCGAGAAGACATTGGCATGACAACTCAATCATGCCATCACATTGTGCATATATGATATAATGTCCTTTTTTTTGAGGGGGTGGGATGGGTTTGAGTTTTGCATGTAAGAAGGATTAGATTTTGCGAATTTCGTGATAGCCATGACTAGTGGCGGAGCCAGGATTTTTTTACTAAGAATCTATATACCAAAAAGTCGACATATGAAAAGGAAAAGGAAAAAAAAATCAGGATTCAGTCTCCCAAGTTGAAGTGAGGTCCTTCCTTTTGACTCAAACTTGCTTTGCCACTAGGCATGACCAAAAAGTCGACATATGAAAAGGAAAAGGAAAAAAAAAATCAGGATTCAGTCTCCCAAGTCGAAGTGAGGTCCTTCCTTTTGACTTAAACCAAGTTTGCGGGGTTTTTGTTCAAGCAATTTGTTGTTGCTTGTCTTTTTTTTTTTTGCATAGAAAACCATCTATAATGTGTGCTCGTGCTTGATCGTTTTTGTCAAGGTTATTGTTTTAGCTTTGATCTGGATATCAAATAATCTGAAGTACACTTCTATAGGATAGGAATATTCGTGAAGTGCTGATGAGGGCTGAGAGATCATTAAAATTAAGTAAACGGAAGGATTGGTATAAGATATTGGGAGTGTCAAAGACATCATCTGTATCAGAGATAAAAAAGGCATACAAAAAGCTTGCGCTGCAATGGCACCCTGACAAGAACGTTGACAACAGAGAAGAAGCTGAAGAAAAGTTTCGTGAAATAGCAGCTGCATATGAGGTTTGTTTTTGTTTTTTCTTTTCGATCATTTTTCGTTTGAGCTGTTGAGTTCTTTTTTGGTTTTGCAATCGTCTCAAGTATTTGGCCGCTACAGCAAAATGTTGTAATAGAAAACATAGAGCATAACATAAAAGATCCGTAGCACATAAAACATAGTTGTTATAGTGAAATATTGTATTAGAGGATATGACTGTTAAAGAAAATTCTGACTGTTTTTGTCTGAATGTTACGTATCTCTAAACAGGTTCTCGGGGATGAGGAAAAACGTACACGATATGACCA</genome_strand>
        <mrna_strand>CCAACCATTCTGCACATAAAGTAAATCTTCATCTTGATTTGTGCAAAGTCTTGGTAAAGCTTGGAAGGGGGAAGGATGCTATATCAAGCTGTTCAGAAGCCCTTGAACTTGATGGAGAGCTTATCGATGCTCTAGTGCAG..........................................................................................................................................................AGGGGTGAAACCAAGCTTCTAACATAAGATTGGGAGGGAGCTGTTGCAGATTTGAAAGAAGCAGCTGAAAAATCTCCTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAGGAATATTCGTGAAGTGCTGATGAGGGCTGATAGATCATTAAAATTAAGTAAACGGAAGGATTGGTATAAGATATTGGGAGTGTCAAAGACATCATCTGTATCATAGATAAAAAAGGCATACAAAAAGCTTGCACTGCAATGGCACCCTGACAAGAACGTTGACAACAGAGAATAAGCTGAAGAAAAGTTTCGTGAAATAGCAGCTGCATATGAT....................................................................................................................................................................................................................................................GTTCTCGGGGATGAGGACAAACGTACACGATATGACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E329877" ref_strand="+" ref_description="SGN-E329877 [cTOD-3-J10]">
      <seq>tctataggtgaatttgcaaagttgaatgatggagccattgatgaagatatggagctttgatcttgtggcatggaggggtttcttgttttcagcattgatacttaactttatattcgcttgccaactctttttccttcaaccccttgtatctgctttagacgccaaacctggtgatgctgctgcattgtttgagagagttgcacaaaatgtaaaagttaagaaatacagtgaggcacttaatgatctaaattcagccatagaggcagacccaacactttcagaggcgtattggcaccgtgcatctctccttcgtcagttgtgcagatatgaggaatcggaaaaaagctacaaaaagtttctggagatgaaaccaagagactcagctgcagagaaagagctttctcagatgcaccaagctaagagtgctcttgattcagctaccaacctgttggacacggatgacattaaaaaagcgttggagtatattgataaagtcgtactagttttctctccagcatgctccaaggccaaactccttaaggtgaagctattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="-" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="93786" stop="90765"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93486" g_stop="93329" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93328" i_stop="92082" i_length="1247">
            <donor d_prob="0.910" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92081" g_stop="91916" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="324" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91915" i_stop="91383" i_length="533">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91382" g_stop="91181" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="526" r_length="202" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91180" i_stop="91093" i_length="88">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91092" g_stop="91065" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="554" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="-" ref_id="SGN-E329877" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329877" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93486" e_stop="93329"/>
          <exon e_start="92081" e_stop="91916"/>
          <exon e_start="91382" e_stop="91181"/>
          <exon e_start="91092" e_stop="91065"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTATAGGTGAATTTGCAAAGTTGAATGATGGAGCCATTGATGAAGATATGGAGCTTTGATCTTGTGGCATGGAGGGGTTTCTTGTTTTCAGCATTGATACTTAACTTTATATTCGCTTGCCAACTCTTTTTCCTTCAACCCCTTGTATCTGCTTTAGGTAAAGATCAAATTTTTATGACTATTTTTGTTTGATTTTGATTTGGGGTTTTCGATTTTTATGTTAGCTGTAAATTTGGGTTACTCAGATTTGTTTGATTTTTAATAGTGACAGTTGATTTGGGGATTTTTAACAGATTTGAGCTTCGTGGTAAGGGAATTTGTTTACATTGTAGAGGTTTCTGATTTTGAGCAAAATCTTGAATGCATATTGCTGTTGTATATGAGTTGGTGAATCCATTTGTGTCTAATTTCTACTTGGGAAGTGTAAAGATCATAACTTTAATTGTTGAAAGAAATTAGTAGTGAAGAAGAACTTTTTTCGCGATGAATAGGCGTATTGCTAGGCAATATGAGACTGAGGAAGTAGTTTTTGCTGTTCTTTTTGAGGTGGGGTGTCAATTAACCTCAAAGATTTGTATCCTTTATGTTCTTTTTAATGTTGATAATGAGGATGTGAGACACCAATTTAGGCGACCGTTTCAATTTGTTTGTCTAGCATAGAGTTTGTATTAAATTACAGATATGTACCAAAATACTCTTTAATGTTGTAGTCTTAAACCTGTAATGTGGAAAGTTAGAACTAGAGAATTGCCAAAAAAGAAAAAAGACAGTCTCTTTTAAATGGAGTAAAAGGTGGAAAGTAAGGCAAACAAATTGGAATGGAGGGAGTAATAAAAACTTAGACAGAAGGGTCAACTGTGCCAATCTTAGGTCCTGCTGTAGTGAGTGAGAACTATATCTGGAGAACTGATGAAACAGGGTTATTCTCTTTAAATTTGTTGTTGAACGTGTCTTGAGTGAGCAGTTGTTTGCAATGAGGAATGATCTGCGGAATCATGCTCCTGTTAATATCTATAGCTTGATTCAAATTATCACATCTGGAGCTTTACCTAGAAATTTCCGAGAGCCGTAATACTGTTTTTGGATGAGAAAAATTGTTTCTTATTATTTAAATCGAGCTCCCGCTAGCATCAAGTAATGTAAAGTGCATCTTGACGAAGGACACTGTTAATTGTTTCATAGAAAGGGCGTTCAATGCTGATTTATGATGTGTCTATGCTCCCCTCTCCAATTGTTGCTGTTATGATGAAGGGTTAATCTTCATTTAAGTGATGAAACGCGAGGGTTTTCTTTATTAATGTAGTTAGGAAATACAAACGAAGTATGCTTTATAGTGTTCTCTTGTCTTGTAATTGAAGTGGCACTTATTGTTCTCCTGATACATTTGCTACTCTTGATGTGTAGACGCCAAACCTGGTGATGCTGCTGCATTGTTTGAGAGAGTTGCACAAAATGTAAAAGTTAAGAAATACAGTGAGGCACTTAATGATCTAAATTCAGCCATAGAGGCAGACCCAACACTTTCAGAGGCGTATTGGCACCGTGCATCTCTCCTTCGTCAGTTGTGCAGGTTGAAATCAATTTTCCTTTTGTTTTTCTTGTACCAGCTCTAGTATCATGTATGTCTTGATTCTTAGTGAAGGTCTTCCTGATATAAGCTTTTGTACCTCTTCATTTCATTGGCAACTTGCTTGAGTAATTTACTATCTCAAATACTATTTGCTTCTTTTCTTTTTTTTTGATAAACTGAGGCAAGCTTTCGTGCTCTTCGACTAATTCCATGGGATACCTGGTACCTCCCACTAGGTAGCAGATAACTCTATCACCAAGGCCAGGACAGATGGAAAGAATCACCTAGTGTTTTTTTGTCTCTGCTGGGATTTGGACCTGAGACCTCATGTTTACAACCCACTTCATTGACAAGTACGCCACACCCTTGGGTGTTGTGGGTTATTTACTTTTGCATGGTGCATAAATGCATCTGTTATCCACAAGTCTTGTTTCTGATTAATTAGTATTCAAGCATGTTGGGCCTTGTCTCTACTGGTAAACTCTGATGTGAAAAATTTGTAATTTATCCTAATATTTTTTGGACTAATGTAGATATGAGGAATCGGAAAAAAGCTACAAAAAGTTTCTGGAGATGAAACCAAGAGACTCAGCTGCAGAGAAGGAGCTTTCTCAGATGCACCAAGCTAAGAGTGCTCTTGATTCAGCTACCAACCTGTTGGACACGGATGACATTAAAAAAGCGTTGGAGTATATTGATAAAGTCGTACTAGTTTTCTCTCCAGCATGCTCCAAGGTATTCAATTTTGTACTATTGATGTAACTTCATGTGTAACCATTAAGTGTTACACCTATGATGATGTCTTTTACATGTGAATTTCTAGGCCAAACTCCTTAAGGTGAAGCTATTGC</genome_strand>
        <mrna_strand>TCTATAGGTGAATTTGCAAAGTTGAATGATGGAGCCATTGATGAAGATATGGAGCTTTGATCTTGTGGCATGGAGGGGTTTCTTGTTTTCAGCATTGATACTTAACTTTATATTCGCTTGCCAACTCTTTTTCCTTCAACCCCTTGTATCTGCTTTAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGCCAAACCTGGTGATGCTGCTGCATTGTTTGAGAGAGTTGCACAAAATGTAAAAGTTAAGAAATACAGTGAGGCACTTAATGATCTAAATTCAGCCATAGAGGCAGACCCAACACTTTCAGAGGCGTATTGGCACCGTGCATCTCTCCTTCGTCAGTTGTGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGAGGAATCGGAAAAAAGCTACAAAAAGTTTCTGGAGATGAAACCAAGAGACTCAGCTGCAGAGAAAGAGCTTTCTCAGATGCACCAAGCTAAGAGTGCTCTTGATTCAGCTACCAACCTGTTGGACACGGATGACATTAAAAAAGCGTTGGAGTATATTGATAAAGTCGTACTAGTTTTCTCTCCAGCATGCTCCAAG........................................................................................GCCAAACTCCTTAAGGTGAAGCTATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E243215" ref_strand="+" ref_description="SGN-E243215 [cLEE-2-E2]">
      <seq>ttattgtagatgaccaattttttcttcgaatacgaaattaaattacaatacacacaaaaaaaatatttgaattttttttatttaaactaaggaatgaaagaaaaaaacaaaataagaataagaaactcaaattattataataaaagaagtcaaaaaataatttttgtatgaaaaaattaaaatataccttgaactttgatagaagaatcatatatatccctaaatattttttttaaaaaaaaattagaagtaacaaatataaatttaaaactaattttttaactttcgttaaatgaagggtatatgtgagccattttctaacggcaggggtatatgtgagccgtttgtataacgataagggcatatatgaaccacttttattacgagggatatatcagctctaaatgacaaagttgagaggtatatcagacccttttccctattttttaaaatttcatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="+" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="94368" stop="95412"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94668" g_stop="95126" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="460" r_length="460" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="+" ref_id="SGN-E243215" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243215" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94668" e_stop="95126"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTATAGATGACCAAATTTTTTCTTCAAATACGGAATTAAATTACAATACACACAAAAAAAATAGTTTAAATTTTTTTTCTTTAAACTAAAGAATGAAAG-AAAAAACAAAATAAGAATAAGAAACTCAAATAATTATAATAAAAGAAGTCAAAAAATAATTTATGTATGAAAAAAATTAAAATATACCTTGAACTTTGATAAAAGAATCATATATACCCCTAAATA-ATTTTTT--AAAAAAATTAGAAGTAACAAATATAAATTTAAAAATAATTTTTTAATTTCCGTTAAATAAAGGGTATATGTGAGCCATTTTGTAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGGTAAGGGCATATATGAGACACTTTTATAACGA-GGATATATCAGCTCTAAATGACAAAGTCGAGGGGTATATCAGACCCTTTCCCCTAAATTTATTTTATTCTAAAC</genome_strand>
        <mrna_strand>TTATTGTAGATGACC-AATTTTTTCTTCGAATACGAAATTAAATTACAATACACACAAAAAAAATA-TTTGAATTTTTTTTATTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGAATAAGAAACTCAAATTATTATAATAAAAGAAGTCAAAAAATAATTTTTGTATG-AAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATATCCCTAAATATTTTTTTTAAAAAAAAATTAGAAGTAACAAATATAAATTTAAAACTAATTTTTTAACTTTCGTTAAATGAAGGGTATATGTGAGCCATTTTCTAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGATAAGGGCATATATGAACCACTTTTATTACGAGGGATATATCAGCTCTAAATGACAAAGTTGAGAGGTATATCAGACCCTTTTCCCT-ATTTTTTAAAATTTCATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E277851" ref_strand="+" ref_description="SGN-E277851 [cLEL-5-K20](-)">
      <seq>agtgtaggtgacagaatcacgaatcacattctccaagaagatcttcaacactccacgggtctcctcatagattagaccagagatacgcttcacaccacccctacgagcaagcctgcgaatagctggcttagtgataccctggatattgtctcttagaaccttcctgtgcctcttggctcctggggttcccaatccctttcctccctttccacgaccagacattttcacagagaaatttgaagaggatgaagtttcctcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="-" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="107867" stop="107010"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107567" g_stop="107310" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="-" ref_id="SGN-E277851" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>258</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277851" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107567" e_stop="107310"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGTAGGTGACGGAATCACGAATCACATTCTCCAAAAAGATCTTCAATACTCCACGGGTCGATCTCCTCATAGATGAGACAAGAGATACGCTTCACACCACCCCTACGAGCAAGCCTGTGAATAGCTGGCTTAGTGATTCCCTGGATGTTGTCTCTTAGAACCTTCTTGTGCCTCTTGGCTCCTCCCTTTCCCAATCCCTTACCTCGTTTTCCATGACCAGACATTTTCACGGAGAAATTTGAAGAAGATGAAGTTT</genome_strand>
        <mrna_strand>AGTGTAGGTGACAGAATCACGAATCACATTCTCCAAGAAGATCTTCAACACTCCAC-GG--G-TCTCCTCATAGATTAGACCAGAGATACGCTTCACACCACCCCTACGAGCAAGCCTGCGAATAGCTGGCTTAGTGATACCCTGGATATTGTCTCTTAGAACCTTCCTGTGCCTCTTGGCTCCTGGGGTTCCCAATCCCTTTCCTCCCTTTCCACGACCAGACATTTTCACAGAGAAATTTGAAGAGGATGAAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E243215" ref_strand="+" ref_description="SGN-E243215 [cLEE-2-E2]">
      <seq>ttattgtagatgaccaattttttcttcgaatacgaaattaaattacaatacacacaaaaaaaatatttgaattttttttatttaaactaaggaatgaaagaaaaaaacaaaataagaataagaaactcaaattattataataaaagaagtcaaaaaataatttttgtatgaaaaaattaaaatataccttgaactttgatagaagaatcatatatatccctaaatattttttttaaaaaaaaattagaagtaacaaatataaatttaaaactaattttttaactttcgttaaatgaagggtatatgtgagccattttctaacggcaggggtatatgtgagccgtttgtataacgataagggcatatatgaaccacttttattacgagggatatatcagctctaaatgacaaagttgagaggtatatcagacccttttccctattttttaaaatttcatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="-" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="130616" stop="129575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130316" g_stop="129877" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="441" r_length="441" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="-" ref_id="SGN-E243215" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243215" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130316" e_stop="129877"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTGTAGATGATCAAATTTTTTTTCGAATACGAAATTAAATTACAATACACACAAAAAAAATAGTTTAATTTTTTTCTCTTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGAATAAGAAACTCAAATGATTATAATAAAAGAAGTCACAAAATAATTTATGTATGAAAAAAAATTAAAATATACCTTAAACTTTGATAGAA-AATCATATATACCCCTAAATAATTTTTTT-AAAAAAAA-TAGAAGTAATAAATATAAATTTAAAACTAATTTTTTAACTTCCGTTAAATGAAGAGTATATGCGAGCCATTTTGTAACGACAGGGGTATATATGAGCCGTTTGTATAACGATAAGGGCATATATGAGCCACTTTTATAACGAGGG-TATATTAGCTCCAAATGACAAAGTTGAGGGGTATATCAGACCCTTTTCCCT</genome_strand>
        <mrna_strand>TTATTGTAGATGACCAATTTTTTCTTCGAATACGAAATTAAATTACAATACACACAAAAAAAATATTTGAATTTTTTT-TATTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGAATAAGAAACTCAAATTATTATAATAAAAGAAGTCAAAAAATAATTTTTGTATG--AAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATATCCCTAAATATTTTTTTTAAAAAAAAATTAGAAGTAACAAATATAAATTTAAAACTAATTTTTTAACTTTCGTTAAATGAAGGGTATATGTGAGCCATTTTCTAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGATAAGGGCATATATGAACCACTTTTATTACGAGGGATATATCAGCTCTAAATGACAAAGTTGAGAGGTATATCAGACCCTTTTCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E239313" ref_strand="-" ref_description="SGN-E239313 [cLEL-9-E15](-)">
      <seq>tttttttttttttttttttttaaaacaattcttatttttatttttttagaggaagaaaacgtaaataacatatattcgagacatcaccagccagatggtaaaagtgcaattacagatttttctattcaaattgtacgccaaaaacaactgataaaccacagaacagttaaaaaacaacaaatcaactcattatccctggagattggatccacctcatctcctagacctttgcttcgccttcgagtcaaaatggtgagctctaagctttttctttttcgtaaaagttgtctgtccaccagaaccttctctaaatggcatacccatgagagccaacaatctgtgtgcctctttatctgtctcagctgttgttgttatgcaaacatccatccctcttggcttaccaagagcatcataacttaactctgggaagacactctgttcacgaaagccaatgctataatttccatgaccatcaaagctattggggtttacgccttgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="+" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="51670" stop="137495"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="136087" g_stop="136104" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="0.833"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="136105" i_stop="136713" i_length="609">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="136714" g_stop="137195" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="500" r_length="482" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="+" ref_id="SGN-E239313" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E239313" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="136087" e_stop="136104"/>
          <exon e_start="136714" e_stop="137195"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTTTTTCCTTTTTTAAGGGGCGGCAAACAACCAAAGAATAGGCTTAGATATCTATCTTGGAGTACCAGTATGGAGATCTAGCAAAATCAGAATGCAGCATTACAAGAACAGGTTAAAACCAAATCAAATGACATAGAACCTGAAACCACTAAAAAGCACATTCATACACACTTTGAAAGAAAAAACTCTGTACAATTTGAGCAGAATAAAATGAAGCCAAGGGAATAAAGATTCAGCAACATGGTATATACTATAAATAACTGTGACTTTCTAATATGCGAATATAAATAAACCTTAGAGGAAGAAAGGAGAAAGGTGGGGGATCAGGGAGTAGAAATAAGTATGGGACTCCACAGCCTCACACACATCAAGTGTTAAGCATTAGGACAAATTTAGAAAACGTAAATAAGATATCGCCCGCAAATACTCCTTATCACATACGATAAAAGATAAAAGCAGAGATGTTAACTCACCTAAATGTGAATATGGTGGAGCTAACAAGAGAAACTCTTTGCCTGAAATCAAAGTAAATGGCAGACGAGAAAAGGGAGCGGGTAGGAAATATTTAATAACATACAAATTACAGTAATCAAGATTCATGAATAGTAAAAACTTAACTAGAGATAAAAACAATTCTTATTTTTATTTTTTTAGAGGAAGAAAACGTAAATAACATATATTCGAGACATCACCAGCCAGATGGTAAAAGTGCAATTACAGATTTTTCTATTCAAATTGTACGCCAAAAACAACTGATAAACCACAGAACAGTTAAAAAACAACAAATCAACTCATTATCCCTGGAGATTGGATCCACCTCATCTCCTAGACCTTTGCTTCGCCTTCGAGTCAAAATGGTGAGCTCTAAGCTTTTTCTTTTTCGTAAAAGTTGTCTGTCCACCAGAACCTTCTCTAAATGGCATACCCATGAGAGCCAACAATCTGTGTGCCTCTTTATCTGTCTCAGCTGTTGTTGTTATGCAAACATCCATCCCTCTTGGCTTACCAAGAGCATCATAACTTAACTCTGGGAAGACACTCTGTTCACGAAAGCCAATGCTATAATTTCCATGACCATCAAAGCTATTGGGGTTTACGCCTTGAA</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAAAACAATTCTTATTTTTATTTTTTTAGAGGAAGAAAACGTAAATAACATATATTCGAGACATCACCAGCCAGATGGTAAAAGTGCAATTACAGATTTTTCTATTCAAATTGTACGCCAAAAACAACTGATAAACCACAGAACAGTTAAAAAACAACAAATCAACTCATTATCCCTGGAGATTGGATCCACCTCATCTCCTAGACCTTTGCTTCGCCTTCGAGTCAAAATGGTGAGCTCTAAGCTTTTTCTTTTTCGTAAAAGTTGTCTGTCCACCAGAACCTTCTCTAAATGGCATACCCATGAGAGCCAACAATCTGTGTGCCTCTTTATCTGTCTCAGCTGTTGTTGTTATGCAAACATCCATCCCTCTTGGCTTACCAAGAGCATCATAACTTAACTCTGGGAAGACACTCTGTTCACGAAAGCCAATGCTATAATTTCCATGACCATCAAAGCTATTGGGGTTTACGCCTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E734481" ref_strand="+" ref_description="SGN-E734481 [LB12DB06]">
      <seq>gagaaaaagctcagagaaaatggcggcttctcctcttcttctacactccacggcctcctctttctacaatgctgagtttccggcgtactccgttcgattgccggtcggaaataccaaggtccggtcgtccaataaattgacggtgaaagcttcagcaacagtactagtggataaaagtgaagctgaaaaagttaatcgtctgaaaacaaattacctcgaaaagattgtgccgttgttgaaggaagaattcagttacaccaatattcttcaggttccgaaggtcgaaaagattgtggtaaattgtggtataggagatgctgcacaaaattccaagggtttggatgcagcaatgaatgatttggccttaattacagggcaaaggcctgtgaagactagggctaagaatgctattgctactttcaaaattagagaaggtcaaccgcttggaattgctgttacacttcgagggaatgtaatgtattcgttccttgaccggttaattaatttggggcttcctcgaacgagggactttcaaggcgtaaaccccaatagctttgatggtcatggaaattatagcattggctttcgtgaacagagtgtcttcccagagttaagttatgatgctcttggtaagccaagagggatggatgtttgcataacaacaacagctgagacagataaagaggcacacagattgttggctctcatgggtatgccatttagagaaggttctggtggacagacaacttttacgaaaaagaaaaagcttagagctcaccattttgactcgaaggcgaagcaaaggtctaggagatgaggtggatccaatctccagggataatgagttgatttngtgttttttaactgttttgtggtttatcagtttgtttttggcgtacaatttgaatagaaaaatctgtaattgcacttttaccaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="-" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="138453" stop="118095"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="138153" g_stop="137883" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="271" r_length="271" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="137882" i_stop="137455" i_length="428">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="137454" g_stop="136787" g_length="668"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="940" r_length="669" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="136786" i_stop="136098" i_length="689">
            <donor d_prob="0.970" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="136097" g_stop="136088" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="941" r_stop="950" r_length="10" r_score="0.800"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="-" ref_id="SGN-E734481" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>949</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734481" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="138153" e_stop="137883"/>
          <exon e_start="137454" e_stop="136787"/>
          <exon e_start="136097" e_stop="136088"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAAAAGCTCAGAGAAAATGGCGGCTTCTCCTCTTCTTCTACACTCCACGGCCTCCTCTTTCTACAATGCTGAGTTTCCGGCGTACTCCGTTCGATTGCCGGTCGGAAATACCAAGGTCCGGTCGTCCAATAAATTGACGGTGAAAGCTTCAGCAACAGTACTAGTGGATAAAAGTGAAGCTGAAAAAGTTAATCGTCTGAAAACAAATTACCTCGAAAAGATTGTGCCGTTGTTGAAGGAAGAATTCAGTTACACCAATATTCTTCAGGTAAACTTAGGAGTCGTTTGTCCATTGCATTTTTTTTCCAGAACAGATAAAAATTAGGGCTTGGGAAAGGGAAAATGGGGGAATTGAACAAATTTTTCAGTTTTAAAAAAAGCTTAGTGCAGGTTCAAACACAAATTCAATTTTCAATTATACTTTTCAAGTTAATTTCAATTTCAAAGCATATGTACTTCTTTAGCTTCAAATTTTACAACTTATATCTACAAATTTGAACTGTTTCTTGTTTGTTTGATTAAATGTTGAATTTTAGAGTTGAAATGCTGAGAAATTAGTTTGTTTGACACTATTATCATTTGAGGAGTGAGAAATCACAGTGAATATTAGTTGCATTGACCTATTGCTTCAAACTCTATTATTATTTTTTAGTTTTAATTTGATTTGATACGGAATGTGGAAAAACCGTGTTTTAGGTTCCGAAGGTCGAAAAGATTGTGGTAAATTGTGGTATAGGAGATGCTGCACAAAATTCCAAGGGTTTGGATGCAGCAATGAATGATTTGGCCTTAATTACAGGGCAAAGGCCTGTGAAGACTAGGGCTAAGAATGCTATTGCTACTTTCAAAATTAGAGAAGGTCAACCGCTTGGAATTGCTGTTACACTTCGAGGGAATGTAATGTATTCGTTCCTTGACCGGTTAATTAATTTGGGGCTTCCTCGAACGAGGGACTTTCAAGGCGTAAACCCCAATAGCTTTGATGGTCATGGAAATTATAGCATTGGCTTTCGTGAACAGAGTGTCTTCCCAGAGTTAAGTTATGATGCTCTTGGTAAGCCAAGAGGGATGGATGTTTGCATAACAACAACAGCTGAGACAGATAAAGAGGCACACAGATTGTTGGCTCTCATGGGTATGCCATTTAGAGAAGGTTCTGGTGGACAGACAACTTTTACGAAAAAGAAAAAGCTTAGAGCTCACCATTTTGACTCGAAGGCGAAGCAAAGGTCTAGGAGATGAGGTGGATCCAATCTCCAGGGATAATGAGTTGATTTGTTGTTTTTTAACTGTTCTGTGGTTTATCAG-TTGTTTTTGGCGTACAATTTGAATAGAAAAATCTGTAATTGCACTTTTACCATCTGGCTGGTGATGTCTCGAATATATGTTATTTACGTTTTCTTCCTCTAAAAAAATAAAAATAAGAATTGTTTTTATCTCTAGTTAAGTTTTTACTATTCATGAATCTTGATTACTGTAATTTGTATGTTATTAAATATTTCCTACCCGCTCCCTTTTCTCGTCTGCCATTTACTTTGATTTCAGGCAAAGAGTTTCTCTTGTTAGCTCCACCATATTCACATTTAGGTGAGTTAACATCTCTGCTTTTATCTTTTATCGTATGTGATAAGGAGTATTTGCGGGCGATATCTTATTTACGTTTTCTAAATTTGTCCTAATGCTTAACACTTGATGTGTGTGAGGCTGTGGAGTCCCATACTTATTTCTACTCCCTGATCCCCCACCTTTCTCCTTTCTTCCTCTAAGGTTTATTTATATTCGCATATTAGAAAGTCACAGTTATTTATAGTATATACCATGTTGCTGAATCTTTATTCCCTTGGCTTCATTTTATTCTGCTCAAATTGTACAGAGTTTTTTCTTTCAAAGTGTGTATGAATGTGCTTTTTAGTGGTTTCAGGTTCTATGTCATTTGATTTGGTTTTAACCTGTTCTTGTAATGCTGCATTCTGATTTTGCTAGATCTCCATACTGGTACTCCAAGATAGATATCTAAGCCTATTCTTTGGTTGTTTGCCGCCCCTTAAAAAAGGAAAAAAGAA</genome_strand>
        <mrna_strand>GAGAAAAAGCTCAGAGAAAATGGCGGCTTCTCCTCTTCTTCTACACTCCACGGCCTCCTCTTTCTACAATGCTGAGTTTCCGGCGTACTCCGTTCGATTGCCGGTCGGAAATACCAAGGTCCGGTCGTCCAATAAATTGACGGTGAAAGCTTCAGCAACAGTACTAGTGGATAAAAGTGAAGCTGAAAAAGTTAATCGTCTGAAAACAAATTACCTCGAAAAGATTGTGCCGTTGTTGAAGGAAGAATTCAGTTACACCAATATTCTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCGAAGGTCGAAAAGATTGTGGTAAATTGTGGTATAGGAGATGCTGCACAAAATTCCAAGGGTTTGGATGCAGCAATGAATGATTTGGCCTTAATTACAGGGCAAAGGCCTGTGAAGACTAGGGCTAAGAATGCTATTGCTACTTTCAAAATTAGAGAAGGTCAACCGCTTGGAATTGCTGTTACACTTCGAGGGAATGTAATGTATTCGTTCCTTGACCGGTTAATTAATTTGGGGCTTCCTCGAACGAGGGACTTTCAAGGCGTAAACCCCAATAGCTTTGATGGTCATGGAAATTATAGCATTGGCTTTCGTGAACAGAGTGTCTTCCCAGAGTTAAGTTATGATGCTCTTGGTAAGCCAAGAGGGATGGATGTTTGCATAACAACAACAGCTGAGACAGATAAAGAGGCACACAGATTGTTGGCTCTCATGGGTATGCCATTTAGAGAAGGTTCTGGTGGACAGACAACTTTTACGAAAAAGAAAAAGCTTAGAGCTCACCATTTTGACTCGAAGGCGAAGCAAAGGTCTAGGAGATGAGGTGGATCCAATCTCCAGGGATAATGAGTTGATTTNGTGTTTTTTAACTGTTTTGTGGTTTATCAGTTTGTTTTTGGCGTACAATTTGAATAGAAAAATCTGTAATTGCACTTTTACCAAAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E238943" ref_strand="-" ref_description="SGN-E238943 [cLEL-9-E15](-)">
      <seq>tttttttttttttttttttgggaaacaattcttatttttatttttttagaggaagaaaacgtaaataacatatattcgagacatcaccagccagatggtaaaagtgcaattacagatttttctattcaaattgtacgccaaaaacaactgataaaccacagaacagttaaaaaacaacaaatcaactcattatccctggagattggatccacctcatctcctagacctttgcttcgccttcgagtcaaaatggtgagctctaagctttttctttttcgtaaaagttgtctgtccaccagaaccttctctaaatggcatacccatgagagccaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="+" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="118091" stop="137329"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="136088" g_stop="136109" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="0.773"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="136110" i_stop="136717" i_length="608">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="136718" g_stop="137029" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="334" r_length="312" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="+" ref_id="SGN-E238943" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>334</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E238943" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="136088" e_stop="136109"/>
          <exon e_start="136718" e_stop="137029"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTTTTTCCTTTTTTAAGGGGCGGCAAACAACCAAAGAATAGGCTTAGATATCTATCTTGGAGTACCAGTATGGAGATCTAGCAAAATCAGAATGCAGCATTACAAGAACAGGTTAAAACCAAATCAAATGACATAGAACCTGAAACCACTAAAAAGCACATTCATACACACTTTGAAAGAAAAAACTCTGTACAATTTGAGCAGAATAAAATGAAGCCAAGGGAATAAAGATTCAGCAACATGGTATATACTATAAATAACTGTGACTTTCTAATATGCGAATATAAATAAACCTTAGAGGAAGAAAGGAGAAAGGTGGGGGATCAGGGAGTAGAAATAAGTATGGGACTCCACAGCCTCACACACATCAAGTGTTAAGCATTAGGACAAATTTAGAAAACGTAAATAAGATATCGCCCGCAAATACTCCTTATCACATACGATAAAAGATAAAAGCAGAGATGTTAACTCACCTAAATGTGAATATGGTGGAGCTAACAAGAGAAACTCTTTGCCTGAAATCAAAGTAAATGGCAGACGAGAAAAGGGAGCGGGTAGGAAATATTTAATAACATACAAATTACAGTAATCAAGATTCATGAATAGTAAAAACTTAACTAGAGATAAAAACAATTCTTATTTTTATTTTTTTAGAGGAAGAAAACGTAAATAACATATATTCGAGACATCACCAGCCAGATGGTAAAAGTGCAATTACAGATTTTTCTATTCAAATTGTACGCCAAAAACAACTGATAAACCACAGAACAGTTAAAAAACAACAAATCAACTCATTATCCCTGGAGATTGGATCCACCTCATCTCCTAGACCTTTGCTTCGCCTTCGAGTCAAAATGGTGAGCTCTAAGCTTTTTCTTTTTCGTAAAAGTTGTCTGTCCACCAGAACCTTCTCTAAATGGCATACCCATGAGAGCCAAC</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTGGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACAATTCTTATTTTTATTTTTTTAGAGGAAGAAAACGTAAATAACATATATTCGAGACATCACCAGCCAGATGGTAAAAGTGCAATTACAGATTTTTCTATTCAAATTGTACGCCAAAAACAACTGATAAACCACAGAACAGTTAAAAAACAACAAATCAACTCATTATCCCTGGAGATTGGATCCACCTCATCTCCTAGACCTTTGCTTCGCCTTCGAGTCAAAATGGTGAGCTCTAAGCTTTTTCTTTTTCGTAAAAGTTGTCTGTCCACCAGAACCTTCTCTAAATGGCATACCCATGAGAGCCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E321662" ref_strand="+" ref_description="SGN-E321662 [cTOB-25-H4]">
      <seq>tggctttcgtgaacagagtgtcttcccagagttaagttatgatgctcttggtaagccaagagggatggatgtttgcataacaacaacagctgagacagataaagaggcacacagattgttggctctcatgggtatgccatttagagaaggttctggtggacagacaacttttacgaaaaagaaaaagcttagagctcaccattttgactcgaaggcgaagcaaaggtctaggagatgaggtggatccaatctccagggataatgagttgatttgttgttttttaactgttctgtggtttatcagttgtttttggcgtacaatttgaatagaaaaatctgtaattgcacttttaccatctggctggtgatgtctcgaatatatgttatttacgttttcttcctctaaaaaaataaaaataagaattgtttttatctctagttaagtttttactattcatgaatcttgattactgtaatttgtatgttattaaatatttcctacccgctccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="-" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="137446" stop="136338"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="137146" g_stop="136638" g_length="509"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="509" r_length="509" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="510" polyA_stop="519"/>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="-" ref_id="SGN-E321662" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321662" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="137146" e_stop="136638"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCTTTCGTGAACAGAGTGTCTTCCCAGAGTTAAGTTATGATGCTCTTGGTAAGCCAAGAGGGATGGATGTTTGCATAACAACAACAGCTGAGACAGATAAAGAGGCACACAGATTGTTGGCTCTCATGGGTATGCCATTTAGAGAAGGTTCTGGTGGACAGACAACTTTTACGAAAAAGAAAAAGCTTAGAGCTCACCATTTTGACTCGAAGGCGAAGCAAAGGTCTAGGAGATGAGGTGGATCCAATCTCCAGGGATAATGAGTTGATTTGTTGTTTTTTAACTGTTCTGTGGTTTATCAGTTGTTTTTGGCGTACAATTTGAATAGAAAAATCTGTAATTGCACTTTTACCATCTGGCTGGTGATGTCTCGAATATATGTTATTTACGTTTTCTTCCTCTAAAAAAATAAAAATAAGAATTGTTTTTATCTCTAGTTAAGTTTTTACTATTCATGAATCTTGATTACTGTAATTTGTATGTTATTAAATATTTCCTACCCGCTCC</genome_strand>
        <mrna_strand>TGGCTTTCGTGAACAGAGTGTCTTCCCAGAGTTAAGTTATGATGCTCTTGGTAAGCCAAGAGGGATGGATGTTTGCATAACAACAACAGCTGAGACAGATAAAGAGGCACACAGATTGTTGGCTCTCATGGGTATGCCATTTAGAGAAGGTTCTGGTGGACAGACAACTTTTACGAAAAAGAAAAAGCTTAGAGCTCACCATTTTGACTCGAAGGCGAAGCAAAGGTCTAGGAGATGAGGTGGATCCAATCTCCAGGGATAATGAGTTGATTTGTTGTTTTTTAACTGTTCTGTGGTTTATCAGTTGTTTTTGGCGTACAATTTGAATAGAAAAATCTGTAATTGCACTTTTACCATCTGGCTGGTGATGTCTCGAATATATGTTATTTACGTTTTCTTCCTCTAAAAAAATAAAAATAAGAATTGTTTTTATCTCTAGTTAAGTTTTTACTATTCATGAATCTTGATTACTGTAATTTGTATGTTATTAAATATTTCCTACCCGCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E735239" ref_strand="+" ref_description="SGN-E735239 [LB14DC02]">
      <seq>aacttattacctcgaaaagattgtgccgttgttgaaggaagaattcagttacaccaatattcttcaggttccgaaggtcgaaaagattgtggtaaattgtggtataggagatgctgcacaaaattccaagggtttggatgcagcaatgaatgatttggccttaattacagggcaaaggcctgtgaagactagggctaagaatgctattgctactttcaaaattagagaaggtcaaccgcttggaattgctgttacacttcgagggaatgtaatgtattcgttccttgaccggttaattaatttggggcttcctcgaacgagggactttcaaggcgtaaaccccaatagctttgatggtcatggaaattatagcattggctttcgtgaacagagtgtcttcccagagttaagttatgatgctcttggtaagccaagagggatggatgtttgcataacaacaacagctgagacagataaagaggcacacagattgttggctctcatgggtatgccatttagagaaggttctggtggacagacaacttttacgaaaaagaaaaagcttagagctcaccattttgactcgaaggcgaagcaaaggtctaggagatgaggtggatccaatctccagggataatgagttgatttgttgttttttaactgttttgtggtttatcagttgtttttggcgtacaatttgaatagaaaaatctgtaattgcacttttaccatctggctggtgatgtctcgaatatatgttatttacgttttcttcctctaaaaaaaaaaaaataaaaattgtttttatctctagntaaagtttttactaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="-" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="138249" stop="136394"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="137949" g_stop="137883" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="137882" i_stop="137455" i_length="428">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="137454" g_stop="136695" g_length="760"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="828" r_length="761" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="829" polyA_stop="840"/>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="-" ref_id="SGN-E735239" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>827</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735239" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="137949" e_stop="137883"/>
          <exon e_start="137454" e_stop="136695"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAATTACCTCGAAAAGATTGTGCCGTTGTTGAAGGAAGAATTCAGTTACACCAATATTCTTCAGGTAAACTTAGGAGTCGTTTGTCCATTGCATTTTTTTTCCAGAACAGATAAAAATTAGGGCTTGGGAAAGGGAAAATGGGGGAATTGAACAAATTTTTCAGTTTTAAAAAAAGCTTAGTGCAGGTTCAAACACAAATTCAATTTTCAATTATACTTTTCAAGTTAATTTCAATTTCAAAGCATATGTACTTCTTTAGCTTCAAATTTTACAACTTATATCTACAAATTTGAACTGTTTCTTGTTTGTTTGATTAAATGTTGAATTTTAGAGTTGAAATGCTGAGAAATTAGTTTGTTTGACACTATTATCATTTGAGGAGTGAGAAATCACAGTGAATATTAGTTGCATTGACCTATTGCTTCAAACTCTATTATTATTTTTTAGTTTTAATTTGATTTGATACGGAATGTGGAAAAACCGTGTTTTAGGTTCCGAAGGTCGAAAAGATTGTGGTAAATTGTGGTATAGGAGATGCTGCACAAAATTCCAAGGGTTTGGATGCAGCAATGAATGATTTGGCCTTAATTACAGGGCAAAGGCCTGTGAAGACTAGGGCTAAGAATGCTATTGCTACTTTCAAAATTAGAGAAGGTCAACCGCTTGGAATTGCTGTTACACTTCGAGGGAATGTAATGTATTCGTTCCTTGACCGGTTAATTAATTTGGGGCTTCCTCGAACGAGGGACTTTCAAGGCGTAAACCCCAATAGCTTTGATGGTCATGGAAATTATAGCATTGGCTTTCGTGAACAGAGTGTCTTCCCAGAGTTAAGTTATGATGCTCTTGGTAAGCCAAGAGGGATGGATGTTTGCATAACAACAACAGCTGAGACAGATAAAGAGGCACACAGATTGTTGGCTCTCATGGGTATGCCATTTAGAGAAGGTTCTGGTGGACAGACAACTTTTACGAAAAAGAAAAAGCTTAGAGCTCACCATTTTGACTCGAAGGCGAAGCAAAGGTCTAGGAGATGAGGTGGATCCAATCTCCAGGGATAATGAGTTGATTTGTTGTTTTTTAACTGTTCTGTGGTTTATCAGTTGTTTTTGGCGTACAATTTGAATAGAAAAATCTGTAATTGCACTTTTACCATCTGGCTGGTGATGTCTCGAATATATGTTATTTACGTTTTCTTCCTCTAAAAAAATAAAAATAAGAATTGTTTTTATCTCTAGTT-AAGTTTTTACT</genome_strand>
        <mrna_strand>AACTTATTACCTCGAAAAGATTGTGCCGTTGTTGAAGGAAGAATTCAGTTACACCAATATTCTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCGAAGGTCGAAAAGATTGTGGTAAATTGTGGTATAGGAGATGCTGCACAAAATTCCAAGGGTTTGGATGCAGCAATGAATGATTTGGCCTTAATTACAGGGCAAAGGCCTGTGAAGACTAGGGCTAAGAATGCTATTGCTACTTTCAAAATTAGAGAAGGTCAACCGCTTGGAATTGCTGTTACACTTCGAGGGAATGTAATGTATTCGTTCCTTGACCGGTTAATTAATTTGGGGCTTCCTCGAACGAGGGACTTTCAAGGCGTAAACCCCAATAGCTTTGATGGTCATGGAAATTATAGCATTGGCTTTCGTGAACAGAGTGTCTTCCCAGAGTTAAGTTATGATGCTCTTGGTAAGCCAAGAGGGATGGATGTTTGCATAACAACAACAGCTGAGACAGATAAAGAGGCACACAGATTGTTGGCTCTCATGGGTATGCCATTTAGAGAAGGTTCTGGTGGACAGACAACTTTTACGAAAAAGAAAAAGCTTAGAGCTCACCATTTTGACTCGAAGGCGAAGCAAAGGTCTAGGAGATGAGGTGGATCCAATCTCCAGGGATAATGAGTTGATTTGTTGTTTTTTAACTGTTTTGTGGTTTATCAGTTGTTTTTGGCGTACAATTTGAATAGAAAAATCTGTAATTGCACTTTTACCATCTGGCTGGTGATGTCTCGAATATATGTTATTTACGTTTTCTTCCTCTAAAAAAAAAAAAATAAAAATTGTTTTTATCTCTAGNTAAAGTTTTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E712801" ref_strand="+" ref_description="SGN-E712801 [FB05DD12]">
      <seq>tttgatggtcatggaaattatagcattggctttcgtgaacagagtgtcttcccagagttaagttatgatgctcttggtaagccaagagggatggatgtttgcataacaacaacagctgagacagataaagaggcacacagattgttggctctcatgggtatgccatttagagaaggttctggtggacagacaacttttacgaaaaagaaaaagcttagagctcaccattttgactcgaaggcgaagcaaaggtctaggagatgaggtggatccaatctccagggataatgagttgatttgttgttttttaactgttctgtggtttatcagttgtttttggcgtacaatttgaatagaaaaatctgtaattgcacttttaccatctggctggtgatgtctcgaatatatgttatttacgttttcttcctctaaaaaaataaaaataagaattgtttttatctctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="-" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="137472" stop="136409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="137172" g_stop="136709" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="464" r_length="464" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="465" polyA_stop="475"/>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="-" ref_id="SGN-E712801" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712801" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="137172" e_stop="136709"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATGGTCATGGAAATTATAGCATTGGCTTTCGTGAACAGAGTGTCTTCCCAGAGTTAAGTTATGATGCTCTTGGTAAGCCAAGAGGGATGGATGTTTGCATAACAACAACAGCTGAGACAGATAAAGAGGCACACAGATTGTTGGCTCTCATGGGTATGCCATTTAGAGAAGGTTCTGGTGGACAGACAACTTTTACGAAAAAGAAAAAGCTTAGAGCTCACCATTTTGACTCGAAGGCGAAGCAAAGGTCTAGGAGATGAGGTGGATCCAATCTCCAGGGATAATGAGTTGATTTGTTGTTTTTTAACTGTTCTGTGGTTTATCAGTTGTTTTTGGCGTACAATTTGAATAGAAAAATCTGTAATTGCACTTTTACCATCTGGCTGGTGATGTCTCGAATATATGTTATTTACGTTTTCTTCCTCTAAAAAAATAAAAATAAGAATTGTTTTTATCTCTA</genome_strand>
        <mrna_strand>TTTGATGGTCATGGAAATTATAGCATTGGCTTTCGTGAACAGAGTGTCTTCCCAGAGTTAAGTTATGATGCTCTTGGTAAGCCAAGAGGGATGGATGTTTGCATAACAACAACAGCTGAGACAGATAAAGAGGCACACAGATTGTTGGCTCTCATGGGTATGCCATTTAGAGAAGGTTCTGGTGGACAGACAACTTTTACGAAAAAGAAAAAGCTTAGAGCTCACCATTTTGACTCGAAGGCGAAGCAAAGGTCTAGGAGATGAGGTGGATCCAATCTCCAGGGATAATGAGTTGATTTGTTGTTTTTTAACTGTTCTGTGGTTTATCAGTTGTTTTTGGCGTACAATTTGAATAGAAAAATCTGTAATTGCACTTTTACCATCTGGCTGGTGATGTCTCGAATATATGTTATTTACGTTTTCTTCCTCTAAAAAAATAAAAATAAGAATTGTTTTTATCTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E223264" ref_strand="+" ref_description="SGN-E223264 [cLEL-14-J12](-)">
      <seq>tgtcttcccagagttaagttatgatgctcttggtaagccaagagggatggatgtttgcataacaccaacagctgagacagataaagaggcacacagattgttggctctcatgggtatgccatttagagaaggttctggtggacagacaacttttacgaaaaagaaaaagcttagagctcaccattttgactcgaaggcgaagcaaaggtctaggagatgaggtggatccaatctccagggataatgagttgatttgttgttttttaactgttctgtggtttatcagttgtttttggcgtacaatttgaatagaaaaatctgtaattgcacttttaccatctggctggtgatgtctcgaatatatgttatttacgttttcttcctctaaacaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="-" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="137428" stop="51670"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="137128" g_stop="136716" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="413" r_length="413" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="-" ref_id="SGN-E223264" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E223264" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="137128" e_stop="136716"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCTTCCCAGAGTTAAGTTATGATGCTCTTGGTAAGCCAAGAGGGATGGATGTTTGCATAACAACAACAGCTGAGACAGATAAAGAGGCACACAGATTGTTGGCTCTCATGGGTATGCCATTTAGAGAAGGTTCTGGTGGACAGACAACTTTTACGAAAAAGAAAAAGCTTAGAGCTCACCATTTTGACTCGAAGGCGAAGCAAAGGTCTAGGAGATGAGGTGGATCCAATCTCCAGGGATAATGAGTTGATTTGTTGTTTTTTAACTGTTCTGTGGTTTATCAGTTGTTTTTGGCGTACAATTTGAATAGAAAAATCTGTAATTGCACTTTTACCATCTGGCTGGTGATGTCTCGAATATATGTTATTTACGTTTTCTTCCTCTAAAAAAATAAAAATAAGAATTGTTTTT</genome_strand>
        <mrna_strand>TGTCTTCCCAGAGTTAAGTTATGATGCTCTTGGTAAGCCAAGAGGGATGGATGTTTGCATAACACCAACAGCTGAGACAGATAAAGAGGCACACAGATTGTTGGCTCTCATGGGTATGCCATTTAGAGAAGGTTCTGGTGGACAGACAACTTTTACGAAAAAGAAAAAGCTTAGAGCTCACCATTTTGACTCGAAGGCGAAGCAAAGGTCTAGGAGATGAGGTGGATCCAATCTCCAGGGATAATGAGTTGATTTGTTGTTTTTTAACTGTTCTGTGGTTTATCAGTTGTTTTTGGCGTACAATTTGAATAGAAAAATCTGTAATTGCACTTTTACCATCTGGCTGGTGATGTCTCGAATATATGTTATTTACGTTTTCTTCCTCTAAACAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E223620" ref_strand="+" ref_description="SGN-E223620 [cLEL-14-J12](-)">
      <seq>agagttaagttatgatgctcttggtaagccaaaagggatggatgtttgcataacaccaacagctgagacagataaagaggcacacagattgttggctctcatgggtatgccatttagagaaggttctggtggacagacaacttttacgaaaaagaaaaagcttagagctcaccattttgactcgaaggcgaagcaaaggtctaggagatgaggtggatccaatctccagggataatgagttgatttgttgttttttaactgttctgtggtttatcagttgtttttggcgtacaatttgaatagaaaaatctgtaattgcacttttaccatctggctggtgatgtctcgaatatatgttatttacgttttcttcctctaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="-" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="137419" stop="51670"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="137119" g_stop="136716" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="404" r_length="404" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="-" ref_id="SGN-E223620" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E223620" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="137119" e_stop="136716"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGTTAAGTTATGATGCTCTTGGTAAGCCAAGAGGGATGGATGTTTGCATAACAACAACAGCTGAGACAGATAAAGAGGCACACAGATTGTTGGCTCTCATGGGTATGCCATTTAGAGAAGGTTCTGGTGGACAGACAACTTTTACGAAAAAGAAAAAGCTTAGAGCTCACCATTTTGACTCGAAGGCGAAGCAAAGGTCTAGGAGATGAGGTGGATCCAATCTCCAGGGATAATGAGTTGATTTGTTGTTTTTTAACTGTTCTGTGGTTTATCAGTTGTTTTTGGCGTACAATTTGAATAGAAAAATCTGTAATTGCACTTTTACCATCTGGCTGGTGATGTCTCGAATATATGTTATTTACGTTTTCTTCCTCTAAAAAAATAAAAATAAGAATTGTTTTT</genome_strand>
        <mrna_strand>AGAGTTAAGTTATGATGCTCTTGGTAAGCCAAAAGGGATGGATGTTTGCATAACACCAACAGCTGAGACAGATAAAGAGGCACACAGATTGTTGGCTCTCATGGGTATGCCATTTAGAGAAGGTTCTGGTGGACAGACAACTTTTACGAAAAAGAAAAAGCTTAGAGCTCACCATTTTGACTCGAAGGCGAAGCAAAGGTCTAGGAGATGAGGTGGATCCAATCTCCAGGGATAATGAGTTGATTTGTTGTTTTTTAACTGTTCTGTGGTTTATCAGTTGTTTTTGGCGTACAATTTGAATAGAAAAATCTGTAATTGCACTTTTACCATCTGGCTGGTGATGTCTCGAATATATGTTATTTACGTTTTCTTCCTCTAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E284487" ref_strand="+" ref_description="SGN-E284487 [cLER-16-L24]">
      <seq>ggaattgctgtgacactacgagggaatgtaatgtattcgttccttgaccggttaattaatctggggcttcctagaacgagggactttcaaggcgtaaaccccaatagctatgatggtcatggaaattatagcattggctttcgagaacagagtgtcttcccagagttaagttatgatgctattggtaagccaagagggatggatgtttgcataacaacaacagctgaaacagataaagaggcacacagattgttggctctcatgggtatgccatttagagaaggttgtggtggacagacaacttttacgaagaacaaaaagcttagagctcaccattttgactcgaacgcgaaccaaatgtctatgagatgaggtggatccaatctccagggataatgagttgatttgttgctatttaactgatgtgcggtttatcagttgtttttggcgtacaattagaatcgaaaaatctgtaatcgcacttttaccatctggctggtgatgactcgaatatatgttatagacgtagtcttcctctaaaagaataaaaatcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="-" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="137580" stop="136426"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="137280" g_stop="136726" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="555" r_length="555" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="-" ref_id="SGN-E284487" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284487" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="137280" e_stop="136726"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAATTGCTGTTACACTTCGAGGGAATGTAATGTATTCGTTCCTTGACCGGTTAATTAATTTGGGGCTTCCTCGAACGAGGGACTTTCAAGGCGTAAACCCCAATAGCTTTGATGGTCATGGAAATTATAGCATTGGCTTTCGTGAACAGAGTGTCTTCCCAGAGTTAAGTTATGATGCTCTTGGTAAGCCAAGAGGGATGGATGTTTGCATAACAACAACAGCTGAGACAGATAAAGAGGCACACAGATTGTTGGCTCTCATGGGTATGCCATTTAGAGAAGGTTCTGGTGGACAGACAACTTTTACGAAAAAGAAAAAGCTTAGAGCTCACCATTTTGACTCGAAGGCGAAGCAAAGGTCTAGGAGATGAGGTGGATCCAATCTCCAGGGATAATGAGTTGATTTGTTGTTTTTTAACTGTTCTGTGGTTTATCAGTTGTTTTTGGCGTACAATTTGAATAGAAAAATCTGTAATTGCACTTTTACCATCTGGCTGGTGATGTCTCGAATATATGTTATTTACGTTTTCTTCCTCTAAAAAAATAAAAATAAG</genome_strand>
        <mrna_strand>GGAATTGCTGTGACACTACGAGGGAATGTAATGTATTCGTTCCTTGACCGGTTAATTAATCTGGGGCTTCCTAGAACGAGGGACTTTCAAGGCGTAAACCCCAATAGCTATGATGGTCATGGAAATTATAGCATTGGCTTTCGAGAACAGAGTGTCTTCCCAGAGTTAAGTTATGATGCTATTGGTAAGCCAAGAGGGATGGATGTTTGCATAACAACAACAGCTGAAACAGATAAAGAGGCACACAGATTGTTGGCTCTCATGGGTATGCCATTTAGAGAAGGTTGTGGTGGACAGACAACTTTTACGAAGAACAAAAAGCTTAGAGCTCACCATTTTGACTCGAACGCGAACCAAATGTCTATGAGATGAGGTGGATCCAATCTCCAGGGATAATGAGTTGATTTGTTGCTATTTAACTGATGTGCGGTTTATCAGTTGTTTTTGGCGTACAATTAGAATCGAAAAATCTGTAATCGCACTTTTACCATCTGGCTGGTGATGACTCGAATATATGTTATAGACGTAGTCTTCCTCTAAAAGAATAAAAATCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E342488" ref_strand="+" ref_description="SGN-E342488 [cTOF-8-H21]">
      <seq>aaattatagcattggctttcgtgaaccagagtgtcttcccagagttaagttatgatgctcttggtaagccaagagggatggatgtttgcataacaacaacagctgagacagataaagaggcacacagattgttggctctcatgggtatgccatttagagaaggttctggtggacagacaacttttacgaaaaagaaaaagcttagagctcaccattttgactcgaaggcgaagcaaaggtctaggagatgaggtggatccaatctccagggataatgagttgatttgttgttttttaactgttctgtggtttatcagttgtttttggcgtacaatttgaatagaaaaatctgtaattgcacttttaccatctggctggtgatgtctcgaatatatgttatttacgttttcttcctctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="-" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="137458" stop="136432"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="137158" g_stop="136733" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="427" r_length="427" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="-" ref_id="SGN-E342488" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342488" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="137158" e_stop="136733"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTATAGCATTGGCTTTCGTGAA-CAGAGTGTCTTCCCAGAGTTAAGTTATGATGCTCTTGGTAAGCCAAGAGGGATGGATGTTTGCATAACAACAACAGCTGAGACAGATAAAGAGGCACACAGATTGTTGGCTCTCATGGGTATGCCATTTAGAGAAGGTTCTGGTGGACAGACAACTTTTACGAAAAAGAAAAAGCTTAGAGCTCACCATTTTGACTCGAAGGCGAAGCAAAGGTCTAGGAGATGAGGTGGATCCAATCTCCAGGGATAATGAGTTGATTTGTTGTTTTTTAACTGTTCTGTGGTTTATCAGTTGTTTTTGGCGTACAATTTGAATAGAAAAATCTGTAATTGCACTTTTACCATCTGGCTGGTGATGTCTCGAATATATGTTATTTACGTTTTCTTCCTCTAAAAAAATAA</genome_strand>
        <mrna_strand>AAATTATAGCATTGGCTTTCGTGAACCAGAGTGTCTTCCCAGAGTTAAGTTATGATGCTCTTGGTAAGCCAAGAGGGATGGATGTTTGCATAACAACAACAGCTGAGACAGATAAAGAGGCACACAGATTGTTGGCTCTCATGGGTATGCCATTTAGAGAAGGTTCTGGTGGACAGACAACTTTTACGAAAAAGAAAAAGCTTAGAGCTCACCATTTTGACTCGAAGGCGAAGCAAAGGTCTAGGAGATGAGGTGGATCCAATCTCCAGGGATAATGAGTTGATTTGTTGTTTTTTAACTGTTCTGTGGTTTATCAGTTGTTTTTGGCGTACAATTTGAATAGAAAAATCTGTAATTGCACTTTTACCATCTGGCTGGTGATGTCTCGAATATATGTTATTTACGTTTTCTTCCTCTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E717251" ref_strand="+" ref_description="SGN-E717251 [FB19CD10]">
      <seq>aatattgtggtaaattgtggtataggagatgctgcacaaaattccaagggtttggatgcagcaatgaatgatttggccttaattacagggcaaaggcctgtgaagactagggctaagaatgctattgctactttcaaaattagagaaggtcaaccgcttggaattgctgttacacttcgagggaatgtaatgtattcgttccttgaccggttaattaatttggggcttcctcgaacgagggactttcaaggcgtaaaccccaatagctttgatggtcatggaaattatagcattggctttcgtgaacagagtgtcttcccagagttaagttatgatgctcttggtaagccaagagggatggatgtttgcataacaacaacagctgagacagataaagaggcacacagattgttggctctcatgggtatgccatttagagaaggttctggtggacagacaacttttacgaaaaagaaaaagcttagagctcaccattttgactcgaaggcgaagcaaaggtctaggagatgaggtggatccaatctccagggataatgagttgatttgttgttttttaactgttttgtggtttatcagttgtttttggcgtacaatttgaatagaaaaatctgtaattgcacttttaccatctggctggtgatgtctcgaatatatgttatttacgttttcttcctctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="-" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="137739" stop="136441"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="137439" g_stop="136741" g_length="699"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="699" r_length="699" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="-" ref_id="SGN-E717251" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717251" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="137439" e_stop="136741"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATTGTGGTAAATTGTGGTATAGGAGATGCTGCACAAAATTCCAAGGGTTTGGATGCAGCAATGAATGATTTGGCCTTAATTACAGGGCAAAGGCCTGTGAAGACTAGGGCTAAGAATGCTATTGCTACTTTCAAAATTAGAGAAGGTCAACCGCTTGGAATTGCTGTTACACTTCGAGGGAATGTAATGTATTCGTTCCTTGACCGGTTAATTAATTTGGGGCTTCCTCGAACGAGGGACTTTCAAGGCGTAAACCCCAATAGCTTTGATGGTCATGGAAATTATAGCATTGGCTTTCGTGAACAGAGTGTCTTCCCAGAGTTAAGTTATGATGCTCTTGGTAAGCCAAGAGGGATGGATGTTTGCATAACAACAACAGCTGAGACAGATAAAGAGGCACACAGATTGTTGGCTCTCATGGGTATGCCATTTAGAGAAGGTTCTGGTGGACAGACAACTTTTACGAAAAAGAAAAAGCTTAGAGCTCACCATTTTGACTCGAAGGCGAAGCAAAGGTCTAGGAGATGAGGTGGATCCAATCTCCAGGGATAATGAGTTGATTTGTTGTTTTTTAACTGTTCTGTGGTTTATCAGTTGTTTTTGGCGTACAATTTGAATAGAAAAATCTGTAATTGCACTTTTACCATCTGGCTGGTGATGTCTCGAATATATGTTATTTACGTTTTCTTCCTCTAA</genome_strand>
        <mrna_strand>AATATTGTGGTAAATTGTGGTATAGGAGATGCTGCACAAAATTCCAAGGGTTTGGATGCAGCAATGAATGATTTGGCCTTAATTACAGGGCAAAGGCCTGTGAAGACTAGGGCTAAGAATGCTATTGCTACTTTCAAAATTAGAGAAGGTCAACCGCTTGGAATTGCTGTTACACTTCGAGGGAATGTAATGTATTCGTTCCTTGACCGGTTAATTAATTTGGGGCTTCCTCGAACGAGGGACTTTCAAGGCGTAAACCCCAATAGCTTTGATGGTCATGGAAATTATAGCATTGGCTTTCGTGAACAGAGTGTCTTCCCAGAGTTAAGTTATGATGCTCTTGGTAAGCCAAGAGGGATGGATGTTTGCATAACAACAACAGCTGAGACAGATAAAGAGGCACACAGATTGTTGGCTCTCATGGGTATGCCATTTAGAGAAGGTTCTGGTGGACAGACAACTTTTACGAAAAAGAAAAAGCTTAGAGCTCACCATTTTGACTCGAAGGCGAAGCAAAGGTCTAGGAGATGAGGTGGATCCAATCTCCAGGGATAATGAGTTGATTTGTTGTTTTTTAACTGTTTTGTGGTTTATCAGTTGTTTTTGGCGTACAATTTGAATAGAAAAATCTGTAATTGCACTTTTACCATCTGGCTGGTGATGTCTCGAATATATGTTATTTACGTTTTCTTCCTCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E733836" ref_strand="+" ref_description="SGN-E733836 [LB11AC11]">
      <seq>gagaaaaagctcagagaaaatggcggcttctcctcttcttctacactccacggcctcctctttctacaatgctgagtttccggcgtactccgttcgattgccggtcggaaataccaaggtccggtcgtccaataaattgacggtgaaagcttcagcaacagtactagtggataaaagtgaagctgaaaaagttaatcgtctgaaaacaaattacctcgaaaagattgtgccgttgttgaaggaagaattcagttacaccaatattcttcaggttccgaaggtcgaaaagattgtggtaaattgtggtataggagatgctgcacaaaattccaagggtttggatgcagcaatgaatgatttggccttaattacagggcaaaggcctgtgaagactagggctaagaatgctattgctactttcaaaattagagaaggtcaaccgcttggaattgctgttacacttcgagggaatgtaatgtattcgttccttgaccggttaattaatttggggcttcctcgaacgagggactttcaaggcgtaaaccccaatagctttgatggtcatggaaattatagcattggctttcgtgaacagagtgtcttcccagagttaagttatgatgctcttggtaagccaagagggatggatgtttgcataacaacaacagctgagacagataaagaggcacacagattgttggctctcatgggtatgccatttagagaaggttctggtggacagacaacttttacgaaaaagaaaaagcttagagctcaccattttgactcgaaagcgaagcaaaggtctaggagatgaggtggatccaatctccagggataatgagttgatttgttgttttttaactgttttgtggtttatcagttgtttttggcgtacattttgaatagaaaaatctgtaattgcacttttacaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="-" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="138453" stop="136491"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="138153" g_stop="137883" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="271" r_length="271" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="137882" i_stop="137455" i_length="428">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="137454" g_stop="136787" g_length="668"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="939" r_length="668" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="-" ref_id="SGN-E733836" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>939</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733836" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="138153" e_stop="137883"/>
          <exon e_start="137454" e_stop="136787"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAAAAGCTCAGAGAAAATGGCGGCTTCTCCTCTTCTTCTACACTCCACGGCCTCCTCTTTCTACAATGCTGAGTTTCCGGCGTACTCCGTTCGATTGCCGGTCGGAAATACCAAGGTCCGGTCGTCCAATAAATTGACGGTGAAAGCTTCAGCAACAGTACTAGTGGATAAAAGTGAAGCTGAAAAAGTTAATCGTCTGAAAACAAATTACCTCGAAAAGATTGTGCCGTTGTTGAAGGAAGAATTCAGTTACACCAATATTCTTCAGGTAAACTTAGGAGTCGTTTGTCCATTGCATTTTTTTTCCAGAACAGATAAAAATTAGGGCTTGGGAAAGGGAAAATGGGGGAATTGAACAAATTTTTCAGTTTTAAAAAAAGCTTAGTGCAGGTTCAAACACAAATTCAATTTTCAATTATACTTTTCAAGTTAATTTCAATTTCAAAGCATATGTACTTCTTTAGCTTCAAATTTTACAACTTATATCTACAAATTTGAACTGTTTCTTGTTTGTTTGATTAAATGTTGAATTTTAGAGTTGAAATGCTGAGAAATTAGTTTGTTTGACACTATTATCATTTGAGGAGTGAGAAATCACAGTGAATATTAGTTGCATTGACCTATTGCTTCAAACTCTATTATTATTTTTTAGTTTTAATTTGATTTGATACGGAATGTGGAAAAACCGTGTTTTAGGTTCCGAAGGTCGAAAAGATTGTGGTAAATTGTGGTATAGGAGATGCTGCACAAAATTCCAAGGGTTTGGATGCAGCAATGAATGATTTGGCCTTAATTACAGGGCAAAGGCCTGTGAAGACTAGGGCTAAGAATGCTATTGCTACTTTCAAAATTAGAGAAGGTCAACCGCTTGGAATTGCTGTTACACTTCGAGGGAATGTAATGTATTCGTTCCTTGACCGGTTAATTAATTTGGGGCTTCCTCGAACGAGGGACTTTCAAGGCGTAAACCCCAATAGCTTTGATGGTCATGGAAATTATAGCATTGGCTTTCGTGAACAGAGTGTCTTCCCAGAGTTAAGTTATGATGCTCTTGGTAAGCCAAGAGGGATGGATGTTTGCATAACAACAACAGCTGAGACAGATAAAGAGGCACACAGATTGTTGGCTCTCATGGGTATGCCATTTAGAGAAGGTTCTGGTGGACAGACAACTTTTACGAAAAAGAAAAAGCTTAGAGCTCACCATTTTGACTCGAAGGCGAAGCAAAGGTCTAGGAGATGAGGTGGATCCAATCTCCAGGGATAATGAGTTGATTTGTTGTTTTTTAACTGTTCTGTGGTTTATCAGTTGTTTTTGGCGTACAATTTGAATAGAAAAATCTGTAATTGCACTTTTACCATCTG</genome_strand>
        <mrna_strand>GAGAAAAAGCTCAGAGAAAATGGCGGCTTCTCCTCTTCTTCTACACTCCACGGCCTCCTCTTTCTACAATGCTGAGTTTCCGGCGTACTCCGTTCGATTGCCGGTCGGAAATACCAAGGTCCGGTCGTCCAATAAATTGACGGTGAAAGCTTCAGCAACAGTACTAGTGGATAAAAGTGAAGCTGAAAAAGTTAATCGTCTGAAAACAAATTACCTCGAAAAGATTGTGCCGTTGTTGAAGGAAGAATTCAGTTACACCAATATTCTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCGAAGGTCGAAAAGATTGTGGTAAATTGTGGTATAGGAGATGCTGCACAAAATTCCAAGGGTTTGGATGCAGCAATGAATGATTTGGCCTTAATTACAGGGCAAAGGCCTGTGAAGACTAGGGCTAAGAATGCTATTGCTACTTTCAAAATTAGAGAAGGTCAACCGCTTGGAATTGCTGTTACACTTCGAGGGAATGTAATGTATTCGTTCCTTGACCGGTTAATTAATTTGGGGCTTCCTCGAACGAGGGACTTTCAAGGCGTAAACCCCAATAGCTTTGATGGTCATGGAAATTATAGCATTGGCTTTCGTGAACAGAGTGTCTTCCCAGAGTTAAGTTATGATGCTCTTGGTAAGCCAAGAGGGATGGATGTTTGCATAACAACAACAGCTGAGACAGATAAAGAGGCACACAGATTGTTGGCTCTCATGGGTATGCCATTTAGAGAAGGTTCTGGTGGACAGACAACTTTTACGAAAAAGAAAAAGCTTAGAGCTCACCATTTTGACTCGAAAGCGAAGCAAAGGTCTAGGAGATGAGGTGGATCCAATCTCCAGGGATAATGAGTTGATTTGTTGTTTTTTAACTGTTTTGTGGTTTATCAGTTGTTTTTGGCGTACATTTTGAATAGAAAAATCTGTAATTGCACTTTTACAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E555267" ref_strand="+" ref_description="SGN-E555267 [cTSC-6-P11]">
      <seq>gaaaagattgtgccgttgttgaaggaagaattcagttacaccaatattcttcaggttccgaaggtcgaaaagattgtggtaaattgtggtataggagatgctgcacaaaattccaagggtttggatgcagcaatgaatgatttggccttaattacagggcaaaggcctgtgaagactagggctaagaatgctattgctactttcaaaattagagaaggtcaaccgcttggaattgctgttacacttcgagggaatgtaatgtattcgttccttgaccggttaattaatttggggcttcctcgaacgagggactttcaaggcgtaaaccccaatagctttgatggtcatggaaattatagcattggctttcgtgaacagagtgtcttcccagagttaagttatgatgctcttggtaagccaagagggatggatgtttgcataacaacaacagctgagacagataaagaggcacacagattgttggctctcatgggtatgccatttagagaaggttctggtggacagacaacttttacgaaaaagaaaaagcttagagctcaccattttgactcgaaggcgaagcaaaggtctaggagatgaggtggatccaatctccagggataatgagttgatttgttgttttttaactgttctgtggtttatcagttgtttttggcgtacaatttgaatagaaaaatctgtaattgcacttttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="-" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="138236" stop="136494"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="137936" g_stop="137883" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="137882" i_stop="137455" i_length="428">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="137454" g_stop="136793" g_length="662"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="716" r_length="662" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="-" ref_id="SGN-E555267" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E555267" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="137936" e_stop="137883"/>
          <exon e_start="137454" e_stop="136793"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAGATTGTGCCGTTGTTGAAGGAAGAATTCAGTTACACCAATATTCTTCAGGTAAACTTAGGAGTCGTTTGTCCATTGCATTTTTTTTCCAGAACAGATAAAAATTAGGGCTTGGGAAAGGGAAAATGGGGGAATTGAACAAATTTTTCAGTTTTAAAAAAAGCTTAGTGCAGGTTCAAACACAAATTCAATTTTCAATTATACTTTTCAAGTTAATTTCAATTTCAAAGCATATGTACTTCTTTAGCTTCAAATTTTACAACTTATATCTACAAATTTGAACTGTTTCTTGTTTGTTTGATTAAATGTTGAATTTTAGAGTTGAAATGCTGAGAAATTAGTTTGTTTGACACTATTATCATTTGAGGAGTGAGAAATCACAGTGAATATTAGTTGCATTGACCTATTGCTTCAAACTCTATTATTATTTTTTAGTTTTAATTTGATTTGATACGGAATGTGGAAAAACCGTGTTTTAGGTTCCGAAGGTCGAAAAGATTGTGGTAAATTGTGGTATAGGAGATGCTGCACAAAATTCCAAGGGTTTGGATGCAGCAATGAATGATTTGGCCTTAATTACAGGGCAAAGGCCTGTGAAGACTAGGGCTAAGAATGCTATTGCTACTTTCAAAATTAGAGAAGGTCAACCGCTTGGAATTGCTGTTACACTTCGAGGGAATGTAATGTATTCGTTCCTTGACCGGTTAATTAATTTGGGGCTTCCTCGAACGAGGGACTTTCAAGGCGTAAACCCCAATAGCTTTGATGGTCATGGAAATTATAGCATTGGCTTTCGTGAACAGAGTGTCTTCCCAGAGTTAAGTTATGATGCTCTTGGTAAGCCAAGAGGGATGGATGTTTGCATAACAACAACAGCTGAGACAGATAAAGAGGCACACAGATTGTTGGCTCTCATGGGTATGCCATTTAGAGAAGGTTCTGGTGGACAGACAACTTTTACGAAAAAGAAAAAGCTTAGAGCTCACCATTTTGACTCGAAGGCGAAGCAAAGGTCTAGGAGATGAGGTGGATCCAATCTCCAGGGATAATGAGTTGATTTGTTGTTTTTTAACTGTTCTGTGGTTTATCAGTTGTTTTTGGCGTACAATTTGAATAGAAAAATCTGTAATTGCACTTTTAC</genome_strand>
        <mrna_strand>GAAAAGATTGTGCCGTTGTTGAAGGAAGAATTCAGTTACACCAATATTCTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCGAAGGTCGAAAAGATTGTGGTAAATTGTGGTATAGGAGATGCTGCACAAAATTCCAAGGGTTTGGATGCAGCAATGAATGATTTGGCCTTAATTACAGGGCAAAGGCCTGTGAAGACTAGGGCTAAGAATGCTATTGCTACTTTCAAAATTAGAGAAGGTCAACCGCTTGGAATTGCTGTTACACTTCGAGGGAATGTAATGTATTCGTTCCTTGACCGGTTAATTAATTTGGGGCTTCCTCGAACGAGGGACTTTCAAGGCGTAAACCCCAATAGCTTTGATGGTCATGGAAATTATAGCATTGGCTTTCGTGAACAGAGTGTCTTCCCAGAGTTAAGTTATGATGCTCTTGGTAAGCCAAGAGGGATGGATGTTTGCATAACAACAACAGCTGAGACAGATAAAGAGGCACACAGATTGTTGGCTCTCATGGGTATGCCATTTAGAGAAGGTTCTGGTGGACAGACAACTTTTACGAAAAAGAAAAAGCTTAGAGCTCACCATTTTGACTCGAAGGCGAAGCAAAGGTCTAGGAGATGAGGTGGATCCAATCTCCAGGGATAATGAGTTGATTTGTTGTTTTTTAACTGTTCTGTGGTTTATCAGTTGTTTTTGGCGTACAATTTGAATAGAAAAATCTGTAATTGCACTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E730386" ref_strand="+" ref_description="SGN-E730386 [LA23DH06]">
      <seq>tctacctggcggcttctcntcttcttctacactccacggccccctttttctacatgctgagtttccggcgtactccgttcgattgccggtcggaaataccaaggtccggtcgtccaataaattgacggtgaaagcttcagcaacagtactagtggataaaagtgaagctgaaaaagttaatcgtctgaaaacaaattacctcgaaaagattgtgccgttgttgaaggaagaattcagttacaccaatattcttcaggttccgaaggtcgaaaagattgtggtaaattgtggtataggagatgctgcacaaaattccaagggtttggatgcagcaatgaatgatttggccttaattacagggcaaaggcctgtgaagactagggctaagaatgctattgctactttcaaaattagagaaggtcaaccgcttggaattgctgttacacttcgagggaatgtaatgtattcgttccttgaccggttaattaatttggggcttcctcgaacgagggactttcaaggcgtaaaccccaatagctttgatggtcatggaaattatagcattggctttcgtgaacagagtgtcttcccagagttaagttatgatgctcttggtaagccaagagggatggatgtttgcataacaacaacagctgagacagataaagaggcacacagattgttggctctcatgggtatgccatttagagaaggttctggtggacagacaacttttacgaaaaagaaaaagcttagagctcaccattttgactcgaaggcgaaagcaaggtctaggagatgaggtggatccaatctccanggataatgagttgatttgttgttttttaactgtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="-" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="138433" stop="136555"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="138139" g_stop="137883" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="256" r_length="256" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="137882" i_stop="137455" i_length="428">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="137454" g_stop="136855" g_length="600"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="856" r_length="600" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="-" ref_id="SGN-E730386" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>857</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730386" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="138139" e_stop="137883"/>
          <exon e_start="137454" e_stop="136855"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAATGGCGGCTTCTCCTCTTCTTCTACACTCCACGGCCTCCTCTTTCTACAATGCTGAGTTTCCGGCGTACTCCGTTCGATTGCCGGTCGGAAATACCAAGGTCCGGTCGTCCAATAAATTGACGGTGAAAGCTTCAGCAACAGTACTAGTGGATAAAAGTGAAGCTGAAAAAGTTAATCGTCTGAAAACAAATTACCTCGAAAAGATTGTGCCGTTGTTGAAGGAAGAATTCAGTTACACCAATATTCTTCAGGTAAACTTAGGAGTCGTTTGTCCATTGCATTTTTTTTCCAGAACAGATAAAAATTAGGGCTTGGGAAAGGGAAAATGGGGGAATTGAACAAATTTTTCAGTTTTAAAAAAAGCTTAGTGCAGGTTCAAACACAAATTCAATTTTCAATTATACTTTTCAAGTTAATTTCAATTTCAAAGCATATGTACTTCTTTAGCTTCAAATTTTACAACTTATATCTACAAATTTGAACTGTTTCTTGTTTGTTTGATTAAATGTTGAATTTTAGAGTTGAAATGCTGAGAAATTAGTTTGTTTGACACTATTATCATTTGAGGAGTGAGAAATCACAGTGAATATTAGTTGCATTGACCTATTGCTTCAAACTCTATTATTATTTTTTAGTTTTAATTTGATTTGATACGGAATGTGGAAAAACCGTGTTTTAGGTTCCGAAGGTCGAAAAGATTGTGGTAAATTGTGGTATAGGAGATGCTGCACAAAATTCCAAGGGTTTGGATGCAGCAATGAATGATTTGGCCTTAATTACAGGGCAAAGGCCTGTGAAGACTAGGGCTAAGAATGCTATTGCTACTTTCAAAATTAGAGAAGGTCAACCGCTTGGAATTGCTGTTACACTTCGAGGGAATGTAATGTATTCGTTCCTTGACCGGTTAATTAATTTGGGGCTTCCTCGAACGAGGGACTTTCAAGGCGTAAACCCCAATAGCTTTGATGGTCATGGAAATTATAGCATTGGCTTTCGTGAACAGAGTGTCTTCCCAGAGTTAAGTTATGATGCTCTTGGTAAGCCAAGAGGGATGGATGTTTGCATAACAACAACAGCTGAGACAGATAAAGAGGCACACAGATTGTTGGCTCTCATGGGTATGCCATTTAGAGAAGGTTCTGGTGGACAGACAACTTTTACGAAAAAGAAAAAGCTTAGAGCTCACCATTTTGACTCGAAGGCGAAGCAAAGGTCTAGGAGATGAGGTGGATCCAATCTCCAGGGATAATGAGTTGATTTGTTGTTTTTTAACTGTTCT</genome_strand>
        <mrna_strand>TCTACCTGGCGGCTTCTCNTCTTCTTCTACACTCCACGGCCCCCTTTTTCTAC-ATGCTGAGTTTCCGGCGTACTCCGTTCGATTGCCGGTCGGAAATACCAAGGTCCGGTCGTCCAATAAATTGACGGTGAAAGCTTCAGCAACAGTACTAGTGGATAAAAGTGAAGCTGAAAAAGTTAATCGTCTGAAAACAAATTACCTCGAAAAGATTGTGCCGTTGTTGAAGGAAGAATTCAGTTACACCAATATTCTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCGAAGGTCGAAAAGATTGTGGTAAATTGTGGTATAGGAGATGCTGCACAAAATTCCAAGGGTTTGGATGCAGCAATGAATGATTTGGCCTTAATTACAGGGCAAAGGCCTGTGAAGACTAGGGCTAAGAATGCTATTGCTACTTTCAAAATTAGAGAAGGTCAACCGCTTGGAATTGCTGTTACACTTCGAGGGAATGTAATGTATTCGTTCCTTGACCGGTTAATTAATTTGGGGCTTCCTCGAACGAGGGACTTTCAAGGCGTAAACCCCAATAGCTTTGATGGTCATGGAAATTATAGCATTGGCTTTCGTGAACAGAGTGTCTTCCCAGAGTTAAGTTATGATGCTCTTGGTAAGCCAAGAGGGATGGATGTTTGCATAACAACAACAGCTGAGACAGATAAAGAGGCACACAGATTGTTGGCTCTCATGGGTATGCCATTTAGAGAAGGTTCTGGTGGACAGACAACTTTTACGAAAAAGAAAAAGCTTAGAGCTCACCATTTTGACTCGAAGGCGAAAGCAAGGTCTAGGAGATGAGGTGGATCCAATCTCCANGGATAATGAGTTGATTTGTTGTTTTTTAACTGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E706016" ref_strand="+" ref_description="SGN-E706016 [FA28DB02]">
      <seq>gaaaaagctcagagaaaatggcggcttctcctcttcttctacactccacggcctcctctttctacaatgctgagtttccggcgtactccgttcgattgccggtcggaaataccaaggtccggtcgtccaataaattgacggtgaaagcttcagcaacagtactagtgtataaaagtgaagctgaaaaagttaatcgtctgaaaacaaattacctcgaaaagattgtgccgttgttgaaggaagaattcagttacaccaatattcttcaggttccgaaggtcgaaaagattgtggtaaattgtggtataggagatgctgcacaaaattccaagggtttggatgcagcaatgaatgatttggccttaattacagggcaaaggcctgtgaagactagggctaagaatgctattgctactttcaaaattagagaaggtcaaccgcttggaattgctgttacacttcgagggaatgtaatgtattcgttccttgaccggttaattaatttggggcttcctcgaacgagggactttcaaggcgtaaaccccaatagctttgatggtcatggaaattatagcattggctttcgtgaacagagtgtcttcccagagttaagttatgatgctcttggtaagccaagagggatggatgtttgcataacaacaacagctgagacagataaagaggcacacagattgttggctctcatgggtatgccatttagagaaggttctggtggacagacaacttttacgaaaaagaaaaagcttagagctcaccattttgactcgaaggcgaagcaaaggtctaggagatgangtggatccaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="-" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="138451" stop="136597"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="138151" g_stop="137883" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="269" r_length="269" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="137882" i_stop="137455" i_length="428">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="137454" g_stop="136897" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="827" r_length="558" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="-" ref_id="SGN-E706016" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>827</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706016" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="138151" e_stop="137883"/>
          <exon e_start="137454" e_stop="136897"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAAGCTCAGAGAAAATGGCGGCTTCTCCTCTTCTTCTACACTCCACGGCCTCCTCTTTCTACAATGCTGAGTTTCCGGCGTACTCCGTTCGATTGCCGGTCGGAAATACCAAGGTCCGGTCGTCCAATAAATTGACGGTGAAAGCTTCAGCAACAGTACTAGTGGATAAAAGTGAAGCTGAAAAAGTTAATCGTCTGAAAACAAATTACCTCGAAAAGATTGTGCCGTTGTTGAAGGAAGAATTCAGTTACACCAATATTCTTCAGGTAAACTTAGGAGTCGTTTGTCCATTGCATTTTTTTTCCAGAACAGATAAAAATTAGGGCTTGGGAAAGGGAAAATGGGGGAATTGAACAAATTTTTCAGTTTTAAAAAAAGCTTAGTGCAGGTTCAAACACAAATTCAATTTTCAATTATACTTTTCAAGTTAATTTCAATTTCAAAGCATATGTACTTCTTTAGCTTCAAATTTTACAACTTATATCTACAAATTTGAACTGTTTCTTGTTTGTTTGATTAAATGTTGAATTTTAGAGTTGAAATGCTGAGAAATTAGTTTGTTTGACACTATTATCATTTGAGGAGTGAGAAATCACAGTGAATATTAGTTGCATTGACCTATTGCTTCAAACTCTATTATTATTTTTTAGTTTTAATTTGATTTGATACGGAATGTGGAAAAACCGTGTTTTAGGTTCCGAAGGTCGAAAAGATTGTGGTAAATTGTGGTATAGGAGATGCTGCACAAAATTCCAAGGGTTTGGATGCAGCAATGAATGATTTGGCCTTAATTACAGGGCAAAGGCCTGTGAAGACTAGGGCTAAGAATGCTATTGCTACTTTCAAAATTAGAGAAGGTCAACCGCTTGGAATTGCTGTTACACTTCGAGGGAATGTAATGTATTCGTTCCTTGACCGGTTAATTAATTTGGGGCTTCCTCGAACGAGGGACTTTCAAGGCGTAAACCCCAATAGCTTTGATGGTCATGGAAATTATAGCATTGGCTTTCGTGAACAGAGTGTCTTCCCAGAGTTAAGTTATGATGCTCTTGGTAAGCCAAGAGGGATGGATGTTTGCATAACAACAACAGCTGAGACAGATAAAGAGGCACACAGATTGTTGGCTCTCATGGGTATGCCATTTAGAGAAGGTTCTGGTGGACAGACAACTTTTACGAAAAAGAAAAAGCTTAGAGCTCACCATTTTGACTCGAAGGCGAAGCAAAGGTCTAGGAGATGAGGTGGATCCAAT</genome_strand>
        <mrna_strand>GAAAAAGCTCAGAGAAAATGGCGGCTTCTCCTCTTCTTCTACACTCCACGGCCTCCTCTTTCTACAATGCTGAGTTTCCGGCGTACTCCGTTCGATTGCCGGTCGGAAATACCAAGGTCCGGTCGTCCAATAAATTGACGGTGAAAGCTTCAGCAACAGTACTAGTGTATAAAAGTGAAGCTGAAAAAGTTAATCGTCTGAAAACAAATTACCTCGAAAAGATTGTGCCGTTGTTGAAGGAAGAATTCAGTTACACCAATATTCTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCGAAGGTCGAAAAGATTGTGGTAAATTGTGGTATAGGAGATGCTGCACAAAATTCCAAGGGTTTGGATGCAGCAATGAATGATTTGGCCTTAATTACAGGGCAAAGGCCTGTGAAGACTAGGGCTAAGAATGCTATTGCTACTTTCAAAATTAGAGAAGGTCAACCGCTTGGAATTGCTGTTACACTTCGAGGGAATGTAATGTATTCGTTCCTTGACCGGTTAATTAATTTGGGGCTTCCTCGAACGAGGGACTTTCAAGGCGTAAACCCCAATAGCTTTGATGGTCATGGAAATTATAGCATTGGCTTTCGTGAACAGAGTGTCTTCCCAGAGTTAAGTTATGATGCTCTTGGTAAGCCAAGAGGGATGGATGTTTGCATAACAACAACAGCTGAGACAGATAAAGAGGCACACAGATTGTTGGCTCTCATGGGTATGCCATTTAGAGAAGGTTCTGGTGGACAGACAACTTTTACGAAAAAGAAAAAGCTTAGAGCTCACCATTTTGACTCGAAGGCGAAGCAAAGGTCTAGGAGATGANGTGGATCCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E702078" ref_strand="+" ref_description="SGN-E702078 [FA17DA02]">
      <seq>aacaatctcagagaaaatggcggcttctcctcttcttctacactccacggcctcctctttctacatgctgagtttccggcgtactccgttcgattgccggtcggaaataccaaggtccggtcgtccaataaattgacggtgaaagcttcagcaacagtactagtggataaaagtgaagctgaaaaagttaatcgtctgaaaacaaattacctcgaaaagattgtgccgttgttgaaggaagaattcagttacaccaatattcttcaggttccgaaggtcgaaaagattgtggtaaattgtggtataggagatgctgcacaaaattccaagggtttggatgcagcaatgaatgatttggccttaattacagggcaaaggcctgtgaagactagggctaagaatgctattgctactttcaaaattagagaaggtcaaccgcttggaattgctgttacacttcgagggaatgtaatgtattcgttccttgaccggttaattaatttggggcttcctcgaacgagggactttcaaggcgtaaaccccaatagctttgatggtcatggaaattatagcattggctttcgtgaacagagtgtcttcccagagttaagttatgatgctcttggtaagccaagagggatggatgtttgcataacaacaacagctgagacagataaagaggcacacagattgttggctctcatgggtatgccatttagagaaggttctggtggacagacaacttttacgaaaaagaaaaagcttagagctcaccattttgactcgaaggcgaagcaaaggtctagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="-" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="138450" stop="136615"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="138150" g_stop="137883" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="267" r_length="267" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="137882" i_stop="137455" i_length="428">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="137454" g_stop="136915" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="807" r_length="540" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="-" ref_id="SGN-E702078" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E702078" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="138150" e_stop="137883"/>
          <exon e_start="137454" e_stop="136915"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGCTCAGAGAAAATGGCGGCTTCTCCTCTTCTTCTACACTCCACGGCCTCCTCTTTCTACAATGCTGAGTTTCCGGCGTACTCCGTTCGATTGCCGGTCGGAAATACCAAGGTCCGGTCGTCCAATAAATTGACGGTGAAAGCTTCAGCAACAGTACTAGTGGATAAAAGTGAAGCTGAAAAAGTTAATCGTCTGAAAACAAATTACCTCGAAAAGATTGTGCCGTTGTTGAAGGAAGAATTCAGTTACACCAATATTCTTCAGGTAAACTTAGGAGTCGTTTGTCCATTGCATTTTTTTTCCAGAACAGATAAAAATTAGGGCTTGGGAAAGGGAAAATGGGGGAATTGAACAAATTTTTCAGTTTTAAAAAAAGCTTAGTGCAGGTTCAAACACAAATTCAATTTTCAATTATACTTTTCAAGTTAATTTCAATTTCAAAGCATATGTACTTCTTTAGCTTCAAATTTTACAACTTATATCTACAAATTTGAACTGTTTCTTGTTTGTTTGATTAAATGTTGAATTTTAGAGTTGAAATGCTGAGAAATTAGTTTGTTTGACACTATTATCATTTGAGGAGTGAGAAATCACAGTGAATATTAGTTGCATTGACCTATTGCTTCAAACTCTATTATTATTTTTTAGTTTTAATTTGATTTGATACGGAATGTGGAAAAACCGTGTTTTAGGTTCCGAAGGTCGAAAAGATTGTGGTAAATTGTGGTATAGGAGATGCTGCACAAAATTCCAAGGGTTTGGATGCAGCAATGAATGATTTGGCCTTAATTACAGGGCAAAGGCCTGTGAAGACTAGGGCTAAGAATGCTATTGCTACTTTCAAAATTAGAGAAGGTCAACCGCTTGGAATTGCTGTTACACTTCGAGGGAATGTAATGTATTCGTTCCTTGACCGGTTAATTAATTTGGGGCTTCCTCGAACGAGGGACTTTCAAGGCGTAAACCCCAATAGCTTTGATGGTCATGGAAATTATAGCATTGGCTTTCGTGAACAGAGTGTCTTCCCAGAGTTAAGTTATGATGCTCTTGGTAAGCCAAGAGGGATGGATGTTTGCATAACAACAACAGCTGAGACAGATAAAGAGGCACACAGATTGTTGGCTCTCATGGGTATGCCATTTAGAGAAGGTTCTGGTGGACAGACAACTTTTACGAAAAAGAAAAAGCTTAGAGCTCACCATTTTGACTCGAAGGCGAAGCAAAGGTCTAGG</genome_strand>
        <mrna_strand>AACAATCTCAGAGAAAATGGCGGCTTCTCCTCTTCTTCTACACTCCACGGCCTCCTCTTTCTAC-ATGCTGAGTTTCCGGCGTACTCCGTTCGATTGCCGGTCGGAAATACCAAGGTCCGGTCGTCCAATAAATTGACGGTGAAAGCTTCAGCAACAGTACTAGTGGATAAAAGTGAAGCTGAAAAAGTTAATCGTCTGAAAACAAATTACCTCGAAAAGATTGTGCCGTTGTTGAAGGAAGAATTCAGTTACACCAATATTCTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCGAAGGTCGAAAAGATTGTGGTAAATTGTGGTATAGGAGATGCTGCACAAAATTCCAAGGGTTTGGATGCAGCAATGAATGATTTGGCCTTAATTACAGGGCAAAGGCCTGTGAAGACTAGGGCTAAGAATGCTATTGCTACTTTCAAAATTAGAGAAGGTCAACCGCTTGGAATTGCTGTTACACTTCGAGGGAATGTAATGTATTCGTTCCTTGACCGGTTAATTAATTTGGGGCTTCCTCGAACGAGGGACTTTCAAGGCGTAAACCCCAATAGCTTTGATGGTCATGGAAATTATAGCATTGGCTTTCGTGAACAGAGTGTCTTCCCAGAGTTAAGTTATGATGCTCTTGGTAAGCCAAGAGGGATGGATGTTTGCATAACAACAACAGCTGAGACAGATAAAGAGGCACACAGATTGTTGGCTCTCATGGGTATGCCATTTAGAGAAGGTTCTGGTGGACAGACAACTTTTACGAAAAAGAAAAAGCTTAGAGCTCACCATTTTGACTCGAAGGCGAAGCAAAGGTCTAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E343227" ref_strand="+" ref_description="SGN-E343227 [cTOF-17-N14]">
      <seq>gtccaataaattgacggtgaaagcttcagcaacagtactagtggataaaagtgaagctgaaaaagttaatcgtctgaaaacaaattacctcgaaaagattgtgccgttgttgaaggaagaattcagttacaccaatattcttcaggttccgaaggtcgaaaagattgtggtaaattgtggtataggagatgctgcacaaaattccaagggtttggatgcagcaatgaatgatttggccttaattacagggcaaaggcctgtgaagactagggctaagaatgctattgctactttcaaaattagagaaggtcaaccgcttggaattgctgttacacttcgagggaatgtaatgtattcgttccttgaccggttaattaatttggggcttcctcgaacgagggactttcaaggcgtaaaccccaatagctttgatggtcatggaaattatagcattggctttcgtgaacagagtgtcttcccagagttaagttatgatgctcttggtaagccaagagggantggatgtttgcataacaacaacagctgagacagataaagaggcacacagattgttggctctcatgggtatgccatttagagaaggttctggtggacagacaacttttacgaaaaagaaaaagcttagagctcaccattttgactcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="-" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="138327" stop="136635"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="138027" g_stop="137883" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="137882" i_stop="137455" i_length="428">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="137454" g_stop="136935" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="666" r_length="521" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="-" ref_id="SGN-E343227" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343227" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="138027" e_stop="137883"/>
          <exon e_start="137454" e_stop="136935"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCAATAAATTGACGGTGAAAGCTTCAGCAACAGTACTAGTGGATAAAAGTGAAGCTGAAAAAGTTAATCGTCTGAAAACAAATTACCTCGAAAAGATTGTGCCGTTGTTGAAGGAAGAATTCAGTTACACCAATATTCTTCAGGTAAACTTAGGAGTCGTTTGTCCATTGCATTTTTTTTCCAGAACAGATAAAAATTAGGGCTTGGGAAAGGGAAAATGGGGGAATTGAACAAATTTTTCAGTTTTAAAAAAAGCTTAGTGCAGGTTCAAACACAAATTCAATTTTCAATTATACTTTTCAAGTTAATTTCAATTTCAAAGCATATGTACTTCTTTAGCTTCAAATTTTACAACTTATATCTACAAATTTGAACTGTTTCTTGTTTGTTTGATTAAATGTTGAATTTTAGAGTTGAAATGCTGAGAAATTAGTTTGTTTGACACTATTATCATTTGAGGAGTGAGAAATCACAGTGAATATTAGTTGCATTGACCTATTGCTTCAAACTCTATTATTATTTTTTAGTTTTAATTTGATTTGATACGGAATGTGGAAAAACCGTGTTTTAGGTTCCGAAGGTCGAAAAGATTGTGGTAAATTGTGGTATAGGAGATGCTGCACAAAATTCCAAGGGTTTGGATGCAGCAATGAATGATTTGGCCTTAATTACAGGGCAAAGGCCTGTGAAGACTAGGGCTAAGAATGCTATTGCTACTTTCAAAATTAGAGAAGGTCAACCGCTTGGAATTGCTGTTACACTTCGAGGGAATGTAATGTATTCGTTCCTTGACCGGTTAATTAATTTGGGGCTTCCTCGAACGAGGGACTTTCAAGGCGTAAACCCCAATAGCTTTGATGGTCATGGAAATTATAGCATTGGCTTTCGTGAACAGAGTGTCTTCCCAGAGTTAAGTTATGATGCTCTTGGTAAGCCAAGAGGGA-TGGATGTTTGCATAACAACAACAGCTGAGACAGATAAAGAGGCACACAGATTGTTGGCTCTCATGGGTATGCCATTTAGAGAAGGTTCTGGTGGACAGACAACTTTTACGAAAAAGAAAAAGCTTAGAGCTCACCATTTTGACTCGA</genome_strand>
        <mrna_strand>GTCCAATAAATTGACGGTGAAAGCTTCAGCAACAGTACTAGTGGATAAAAGTGAAGCTGAAAAAGTTAATCGTCTGAAAACAAATTACCTCGAAAAGATTGTGCCGTTGTTGAAGGAAGAATTCAGTTACACCAATATTCTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCGAAGGTCGAAAAGATTGTGGTAAATTGTGGTATAGGAGATGCTGCACAAAATTCCAAGGGTTTGGATGCAGCAATGAATGATTTGGCCTTAATTACAGGGCAAAGGCCTGTGAAGACTAGGGCTAAGAATGCTATTGCTACTTTCAAAATTAGAGAAGGTCAACCGCTTGGAATTGCTGTTACACTTCGAGGGAATGTAATGTATTCGTTCCTTGACCGGTTAATTAATTTGGGGCTTCCTCGAACGAGGGACTTTCAAGGCGTAAACCCCAATAGCTTTGATGGTCATGGAAATTATAGCATTGGCTTTCGTGAACAGAGTGTCTTCCCAGAGTTAAGTTATGATGCTCTTGGTAAGCCAAGAGGGANTGGATGTTTGCATAACAACAACAGCTGAGACAGATAAAGAGGCACACAGATTGTTGGCTCTCATGGGTATGCCATTTAGAGAAGGTTCTGGTGGACAGACAACTTTTACGAAAAAGAAAAAGCTTAGAGCTCACCATTTTGACTCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E346430" ref_strand="+" ref_description="SGN-E346430 [cTOF-23-B3]">
      <seq>gcaaccaattgcaggattagagagaggtggagttgcagtatcgattgccggtcggaaataccaaggtccggtcgtccaataaattgacggtgaaagcttcagcaacagtactagtggataaaagtgaagctgaaaaagttaatcgtctgaaaacaaattacctcgaaaagattgtgccgttgttgaaggaagaattcagttacaccaatattcttcaggttccgaaggtcgaaaagattgtggtaaattgtggtataggagatgctgcacaaaattccaagggtttggatgcagcaatgaatgatttggccttaattacagggcaaaggcctgtgaagactagggctaagaatgctattgctactttcaaaattagagaaggtcaaccgcttggaattgctgttacacttcgagggaatgtaatgtattcgttccttgaccggttaattaatttggggcttcctcgaacgagggactttcaaggcgtaaaccccaatagctttgatggtcatggaaattatagcattggctctcgtgaacagagtgtcttcccagagttaagttatgatgctcttggtaagccaagagggantggatgtttgcataacaacaacagctgagacagataaagaggcacacagattgttggctctcatgggtatgccatttagagaaaggttctggtggacagacaacttttacgaaaaagaaaaagcttagagctcaccattttgactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="-" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="138364" stop="136636"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="138060" g_stop="137883" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="218" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="137882" i_stop="137455" i_length="428">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="137454" g_stop="136936" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="739" r_length="521" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="-" ref_id="SGN-E346430" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346430" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="138060" e_stop="137883"/>
          <exon e_start="137454" e_stop="136936"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGATTGCCGGTCGGAAATACCAAGGTCCGGTCGTCCAATAAATTGACGGTGAAAGCTTCAGCAACAGTACTAGTGGATAAAAGTGAAGCTGAAAAAGTTAATCGTCTGAAAACAAATTACCTCGAAAAGATTGTGCCGTTGTTGAAGGAAGAATTCAGTTACACCAATATTCTTCAGGTAAACTTAGGAGTCGTTTGTCCATTGCATTTTTTTTCCAGAACAGATAAAAATTAGGGCTTGGGAAAGGGAAAATGGGGGAATTGAACAAATTTTTCAGTTTTAAAAAAAGCTTAGTGCAGGTTCAAACACAAATTCAATTTTCAATTATACTTTTCAAGTTAATTTCAATTTCAAAGCATATGTACTTCTTTAGCTTCAAATTTTACAACTTATATCTACAAATTTGAACTGTTTCTTGTTTGTTTGATTAAATGTTGAATTTTAGAGTTGAAATGCTGAGAAATTAGTTTGTTTGACACTATTATCATTTGAGGAGTGAGAAATCACAGTGAATATTAGTTGCATTGACCTATTGCTTCAAACTCTATTATTATTTTTTAGTTTTAATTTGATTTGATACGGAATGTGGAAAAACCGTGTTTTAGGTTCCGAAGGTCGAAAAGATTGTGGTAAATTGTGGTATAGGAGATGCTGCACAAAATTCCAAGGGTTTGGATGCAGCAATGAATGATTTGGCCTTAATTACAGGGCAAAGGCCTGTGAAGACTAGGGCTAAGAATGCTATTGCTACTTTCAAAATTAGAGAAGGTCAACCGCTTGGAATTGCTGTTACACTTCGAGGGAATGTAATGTATTCGTTCCTTGACCGGTTAATTAATTTGGGGCTTCCTCGAACGAGGGACTTTCAAGGCGTAAACCCCAATAGCTTTGATGGTCATGGAAATTATAGCATTGGCTTTCGTGAACAGAGTGTCTTCCCAGAGTTAAGTTATGATGCTCTTGGTAAGCCAAGAGGGA-TGGATGTTTGCATAACAACAACAGCTGAGACAGATAAAGAGGCACACAGATTGTTGGCTCTCATGGGTATGCCATTTAGAG-AAGGTTCTGGTGGACAGACAACTTTTACGAAAAAGAAAAAGCTTAGAGCTCACCATTTTGACTCG</genome_strand>
        <mrna_strand>TCGATTGCCGGTCGGAAATACCAAGGTCCGGTCGTCCAATAAATTGACGGTGAAAGCTTCAGCAACAGTACTAGTGGATAAAAGTGAAGCTGAAAAAGTTAATCGTCTGAAAACAAATTACCTCGAAAAGATTGTGCCGTTGTTGAAGGAAGAATTCAGTTACACCAATATTCTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCGAAGGTCGAAAAGATTGTGGTAAATTGTGGTATAGGAGATGCTGCACAAAATTCCAAGGGTTTGGATGCAGCAATGAATGATTTGGCCTTAATTACAGGGCAAAGGCCTGTGAAGACTAGGGCTAAGAATGCTATTGCTACTTTCAAAATTAGAGAAGGTCAACCGCTTGGAATTGCTGTTACACTTCGAGGGAATGTAATGTATTCGTTCCTTGACCGGTTAATTAATTTGGGGCTTCCTCGAACGAGGGACTTTCAAGGCGTAAACCCCAATAGCTTTGATGGTCATGGAAATTATAGCATTGGCTCTCGTGAACAGAGTGTCTTCCCAGAGTTAAGTTATGATGCTCTTGGTAAGCCAAGAGGGANTGGATGTTTGCATAACAACAACAGCTGAGACAGATAAAGAGGCACACAGATTGTTGGCTCTCATGGGTATGCCATTTAGAGAAAGGTTCTGGTGGACAGACAACTTTTACGAAAAAGAAAAAGCTTAGAGCTCACCATTTTGACTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E734704" ref_strand="+" ref_description="SGN-E734704 [LB13BE05]">
      <seq>cacacagagagaaaaagctcagagaaaatggcggcttctcctcttcttctacactccacggcctcctctttctacaatgctgagtttccggcgtactccgttcgattgccggtcggaaataccaaggtccggtcgtccaataaattgacggtgaaagcttcagcaacagtactagtggataaaagtgaagctgaaaaagttaatcgtctgaaaacaaattacctcgaaaagattgtgccgttgttgaaggaagaattcagttacaccaatattcttcaggttccgaaggtcgaaaagattgtggtaaattgtggtataggagatgctgcacaaaattccaagggtttggatgcagcaatgaatgatttggccttaattacagggcaaaggcctgtgaagactagggctaagaatgctattgctactttcaaaattagagaaggtcaaccgcttggaattgctgttacacttcgagggaatgtaatgtattcgttccttgaccggttaattaatttggggcttcctcgaacgagggactttcaaggcgtaaaccccaatagctttgatggtcatggaaattatagcattggctttcgtgaacagagtgtcttcccagagttaagttatgatgctcttggtaagccaagagggatggatgtttgcataacaacaacagctgagacagataaagaggcacacagattgttggctctcatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="-" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="138461" stop="136715"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="138161" g_stop="137883" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="279" r_length="279" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="137882" i_stop="137455" i_length="428">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="137454" g_stop="137015" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="719" r_length="440" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="-" ref_id="SGN-E734704" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734704" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="138161" e_stop="137883"/>
          <exon e_start="137454" e_stop="137015"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACACAGAGAGAAAAAGCTCAGAGAAAATGGCGGCTTCTCCTCTTCTTCTACACTCCACGGCCTCCTCTTTCTACAATGCTGAGTTTCCGGCGTACTCCGTTCGATTGCCGGTCGGAAATACCAAGGTCCGGTCGTCCAATAAATTGACGGTGAAAGCTTCAGCAACAGTACTAGTGGATAAAAGTGAAGCTGAAAAAGTTAATCGTCTGAAAACAAATTACCTCGAAAAGATTGTGCCGTTGTTGAAGGAAGAATTCAGTTACACCAATATTCTTCAGGTAAACTTAGGAGTCGTTTGTCCATTGCATTTTTTTTCCAGAACAGATAAAAATTAGGGCTTGGGAAAGGGAAAATGGGGGAATTGAACAAATTTTTCAGTTTTAAAAAAAGCTTAGTGCAGGTTCAAACACAAATTCAATTTTCAATTATACTTTTCAAGTTAATTTCAATTTCAAAGCATATGTACTTCTTTAGCTTCAAATTTTACAACTTATATCTACAAATTTGAACTGTTTCTTGTTTGTTTGATTAAATGTTGAATTTTAGAGTTGAAATGCTGAGAAATTAGTTTGTTTGACACTATTATCATTTGAGGAGTGAGAAATCACAGTGAATATTAGTTGCATTGACCTATTGCTTCAAACTCTATTATTATTTTTTAGTTTTAATTTGATTTGATACGGAATGTGGAAAAACCGTGTTTTAGGTTCCGAAGGTCGAAAAGATTGTGGTAAATTGTGGTATAGGAGATGCTGCACAAAATTCCAAGGGTTTGGATGCAGCAATGAATGATTTGGCCTTAATTACAGGGCAAAGGCCTGTGAAGACTAGGGCTAAGAATGCTATTGCTACTTTCAAAATTAGAGAAGGTCAACCGCTTGGAATTGCTGTTACACTTCGAGGGAATGTAATGTATTCGTTCCTTGACCGGTTAATTAATTTGGGGCTTCCTCGAACGAGGGACTTTCAAGGCGTAAACCCCAATAGCTTTGATGGTCATGGAAATTATAGCATTGGCTTTCGTGAACAGAGTGTCTTCCCAGAGTTAAGTTATGATGCTCTTGGTAAGCCAAGAGGGATGGATGTTTGCATAACAACAACAGCTGAGACAGATAAAGAGGCACACAGATTGTTGGCTCTCATGGG</genome_strand>
        <mrna_strand>CACACAGAGAGAAAAAGCTCAGAGAAAATGGCGGCTTCTCCTCTTCTTCTACACTCCACGGCCTCCTCTTTCTACAATGCTGAGTTTCCGGCGTACTCCGTTCGATTGCCGGTCGGAAATACCAAGGTCCGGTCGTCCAATAAATTGACGGTGAAAGCTTCAGCAACAGTACTAGTGGATAAAAGTGAAGCTGAAAAAGTTAATCGTCTGAAAACAAATTACCTCGAAAAGATTGTGCCGTTGTTGAAGGAAGAATTCAGTTACACCAATATTCTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCGAAGGTCGAAAAGATTGTGGTAAATTGTGGTATAGGAGATGCTGCACAAAATTCCAAGGGTTTGGATGCAGCAATGAATGATTTGGCCTTAATTACAGGGCAAAGGCCTGTGAAGACTAGGGCTAAGAATGCTATTGCTACTTTCAAAATTAGAGAAGGTCAACCGCTTGGAATTGCTGTTACACTTCGAGGGAATGTAATGTATTCGTTCCTTGACCGGTTAATTAATTTGGGGCTTCCTCGAACGAGGGACTTTCAAGGCGTAAACCCCAATAGCTTTGATGGTCATGGAAATTATAGCATTGGCTTTCGTGAACAGAGTGTCTTCCCAGAGTTAAGTTATGATGCTCTTGGTAAGCCAAGAGGGATGGATGTTTGCATAACAACAACAGCTGAGACAGATAAAGAGGCACACAGATTGTTGGCTCTCATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E347775" ref_strand="+" ref_description="SGN-E347775 [cTOF-26-D19]">
      <seq>tccaattacccttttatttttacacacagagagaaaaagctcagagaaaatggcggcttctcctcttcttctacactccacggcctcctctttctacaatgctgagtttccggcgtactccgttcgattgccggtcggaaataccaaggtccggtcgtccaataaattgacggtgaaagcttcagcaacagtactagtggataaaagtgaagctgaaaaagttaatcgtctgaaaacaaattacctcgaaaagattgtgccgttgttgaaggaagaattcagttacaccaatattcttcaggttccgaaggtcgaaaagattgtggtaaattgtggtataggagatgctgcacaaaattccaagggtttggatgcagcaatgaatgatttggccttaattacagggcaaaggcctgtgaagactagggctaagaatgctattgctactttcaaaattagagaaggtcaaccgcttggaattgctgttacacttcgagggaatgtaatgtattcgttccttgaccggttaattaatttggggcttcctcgaacgagggactttcaaggcgtaaaccccaatagctttgatggtcatggaaattatagcattggctttcgtgaacagagtgtcttcccagagttaagttatgatgctcttgggtagccaaagaggatggatgtttgcataacaaacacagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="-" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="138484" stop="136755"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="138184" g_stop="137883" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="137882" i_stop="137455" i_length="428">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="137454" g_stop="137055" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="701" r_length="400" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="-" ref_id="SGN-E347775" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347775" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="138184" e_stop="137883"/>
          <exon e_start="137454" e_stop="137055"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAATTACCCTTTTATTTTTCACACACAGAGAGAAAAAGCTCAGAGAAAATGGCGGCTTCTCCTCTTCTTCTACACTCCACGGCCTCCTCTTTCTACAATGCTGAGTTTCCGGCGTACTCCGTTCGATTGCCGGTCGGAAATACCAAGGTCCGGTCGTCCAATAAATTGACGGTGAAAGCTTCAGCAACAGTACTAGTGGATAAAAGTGAAGCTGAAAAAGTTAATCGTCTGAAAACAAATTACCTCGAAAAGATTGTGCCGTTGTTGAAGGAAGAATTCAGTTACACCAATATTCTTCAGGTAAACTTAGGAGTCGTTTGTCCATTGCATTTTTTTTCCAGAACAGATAAAAATTAGGGCTTGGGAAAGGGAAAATGGGGGAATTGAACAAATTTTTCAGTTTTAAAAAAAGCTTAGTGCAGGTTCAAACACAAATTCAATTTTCAATTATACTTTTCAAGTTAATTTCAATTTCAAAGCATATGTACTTCTTTAGCTTCAAATTTTACAACTTATATCTACAAATTTGAACTGTTTCTTGTTTGTTTGATTAAATGTTGAATTTTAGAGTTGAAATGCTGAGAAATTAGTTTGTTTGACACTATTATCATTTGAGGAGTGAGAAATCACAGTGAATATTAGTTGCATTGACCTATTGCTTCAAACTCTATTATTATTTTTTAGTTTTAATTTGATTTGATACGGAATGTGGAAAAACCGTGTTTTAGGTTCCGAAGGTCGAAAAGATTGTGGTAAATTGTGGTATAGGAGATGCTGCACAAAATTCCAAGGGTTTGGATGCAGCAATGAATGATTTGGCCTTAATTACAGGGCAAAGGCCTGTGAAGACTAGGGCTAAGAATGCTATTGCTACTTTCAAAATTAGAGAAGGTCAACCGCTTGGAATTGCTGTTACACTTCGAGGGAATGTAATGTATTCGTTCCTTGACCGGTTAATTAATTTGGGGCTTCCTCGAACGAGGGACTTTCAAGGCGTAAACCCCAATAGCTTTGATGGTCATGGAAATTATAGCATTGGCTTTCGTGAACAGAGTGTCTTCCCAGAGTTAAGTTATGATGCTCTTGGTAAGCCAAGAGGGATGGATGTTTGCATAACAACAACAGCTG</genome_strand>
        <mrna_strand>TCCAATTACCCTTTTATTTTT-ACACACAGAGAGAAAAAGCTCAGAGAAAATGGCGGCTTCTCCTCTTCTTCTACACTCCACGGCCTCCTCTTTCTACAATGCTGAGTTTCCGGCGTACTCCGTTCGATTGCCGGTCGGAAATACCAAGGTCCGGTCGTCCAATAAATTGACGGTGAAAGCTTCAGCAACAGTACTAGTGGATAAAAGTGAAGCTGAAAAAGTTAATCGTCTGAAAACAAATTACCTCGAAAAGATTGTGCCGTTGTTGAAGGAAGAATTCAGTTACACCAATATTCTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCGAAGGTCGAAAAGATTGTGGTAAATTGTGGTATAGGAGATGCTGCACAAAATTCCAAGGGTTTGGATGCAGCAATGAATGATTTGGCCTTAATTACAGGGCAAAGGCCTGTGAAGACTAGGGCTAAGAATGCTATTGCTACTTTCAAAATTAGAGAAGGTCAACCGCTTGGAATTGCTGTTACACTTCGAGGGAATGTAATGTATTCGTTCCTTGACCGGTTAATTAATTTGGGGCTTCCTCGAACGAGGGACTTTCAAGGCGTAAACCCCAATAGCTTTGATGGTCATGGAAATTATAGCATTGGCTTTCGTGAACAGAGTGTCTTCCCAGAGTTAAGTTATGATGCTCTTGGGTAGCCAAAGAGGATGGATGTTTGCATAACAAACACAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E342016" ref_strand="+" ref_description="SGN-E342016 [cTOF-10-M4]">
      <seq>acaaagaacatcttatccaattacccttttatttttcacacacagagagaaaaagctcagagaaaatggcggcttctcctcttcttctacactccacggcctcctctttctacaatgctgagtttccggcgtactccgttcgattgccggtcggaaataccaaggtccggtcgtccaataaattgacggtgaaagcttcagcaacagtactagtggataaaagtgaagctgaaaaagttaatcgtctgaaaacaaattacctcgaaaagattgtgccgttgttgaaggaagaattcagttacaccaatattcttcaggttccgaaggtcgaaaagattgtggtaaattgtggtataggagatgctgcacaaaattccaagggtttggatgcagcaatgaatgatttggccttaattacagggcaaaggcctgtgaagactagggctaagaatgctattgctactttcaaaattagagaaggtcaaccgcttggaattgctgttacacttcgagggaatgtaatgtattcgttccttgaccggttaattaatttggggcttcctcgaacgagggactttcaaggcgtaaaccccaatagctttgatggtcatggaaattatagcattggctttcgtgaacagagtgtcttcccaagttaagttatgatgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="-" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="138499" stop="136800"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="138199" g_stop="137883" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="317" r_length="317" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="137882" i_stop="137455" i_length="428">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="137454" g_stop="137100" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="671" r_length="354" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="-" ref_id="SGN-E342016" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342016" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="138199" e_stop="137883"/>
          <exon e_start="137454" e_stop="137100"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAGAACATCTTATCCAATTACCCTTTTATTTTTCACACACAGAGAGAAAAAGCTCAGAGAAAATGGCGGCTTCTCCTCTTCTTCTACACTCCACGGCCTCCTCTTTCTACAATGCTGAGTTTCCGGCGTACTCCGTTCGATTGCCGGTCGGAAATACCAAGGTCCGGTCGTCCAATAAATTGACGGTGAAAGCTTCAGCAACAGTACTAGTGGATAAAAGTGAAGCTGAAAAAGTTAATCGTCTGAAAACAAATTACCTCGAAAAGATTGTGCCGTTGTTGAAGGAAGAATTCAGTTACACCAATATTCTTCAGGTAAACTTAGGAGTCGTTTGTCCATTGCATTTTTTTTCCAGAACAGATAAAAATTAGGGCTTGGGAAAGGGAAAATGGGGGAATTGAACAAATTTTTCAGTTTTAAAAAAAGCTTAGTGCAGGTTCAAACACAAATTCAATTTTCAATTATACTTTTCAAGTTAATTTCAATTTCAAAGCATATGTACTTCTTTAGCTTCAAATTTTACAACTTATATCTACAAATTTGAACTGTTTCTTGTTTGTTTGATTAAATGTTGAATTTTAGAGTTGAAATGCTGAGAAATTAGTTTGTTTGACACTATTATCATTTGAGGAGTGAGAAATCACAGTGAATATTAGTTGCATTGACCTATTGCTTCAAACTCTATTATTATTTTTTAGTTTTAATTTGATTTGATACGGAATGTGGAAAAACCGTGTTTTAGGTTCCGAAGGTCGAAAAGATTGTGGTAAATTGTGGTATAGGAGATGCTGCACAAAATTCCAAGGGTTTGGATGCAGCAATGAATGATTTGGCCTTAATTACAGGGCAAAGGCCTGTGAAGACTAGGGCTAAGAATGCTATTGCTACTTTCAAAATTAGAGAAGGTCAACCGCTTGGAATTGCTGTTACACTTCGAGGGAATGTAATGTATTCGTTCCTTGACCGGTTAATTAATTTGGGGCTTCCTCGAACGAGGGACTTTCAAGGCGTAAACCCCAATAGCTTTGATGGTCATGGAAATTATAGCATTGGCTTTCGTGAACAGAGTGTCTTCCCAGAGTTAAGTTATGATGCTC</genome_strand>
        <mrna_strand>ACAAAGAACATCTTATCCAATTACCCTTTTATTTTTCACACACAGAGAGAAAAAGCTCAGAGAAAATGGCGGCTTCTCCTCTTCTTCTACACTCCACGGCCTCCTCTTTCTACAATGCTGAGTTTCCGGCGTACTCCGTTCGATTGCCGGTCGGAAATACCAAGGTCCGGTCGTCCAATAAATTGACGGTGAAAGCTTCAGCAACAGTACTAGTGGATAAAAGTGAAGCTGAAAAAGTTAATCGTCTGAAAACAAATTACCTCGAAAAGATTGTGCCGTTGTTGAAGGAAGAATTCAGTTACACCAATATTCTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCGAAGGTCGAAAAGATTGTGGTAAATTGTGGTATAGGAGATGCTGCACAAAATTCCAAGGGTTTGGATGCAGCAATGAATGATTTGGCCTTAATTACAGGGCAAAGGCCTGTGAAGACTAGGGCTAAGAATGCTATTGCTACTTTCAAAATTAGAGAAGGTCAACCGCTTGGAATTGCTGTTACACTTCGAGGGAATGTAATGTATTCGTTCCTTGACCGGTTAATTAATTTGGGGCTTCCTCGAACGAGGGACTTTCAAGGCGTAAACCCCAATAGCTTTGATGGTCATGGAAATTATAGCATTGGCTTTCGTGAACAGAGTGTCTTCCCA-AGTTAAGTTATGATGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E322615" ref_strand="+" ref_description="SGN-E322615 [cTOB-26-I7]">
      <seq>ttttcttttttatttttcacacacagagagaaaaagctcagagaaaatggcggcttctcctcttcttctacactccacggcctcctctttctacaatgctgagtttccggcgtactccgttcgattgccggtcggaaataccaaggtccggtcgtccaataaattgacggtgaaagcttcagcaacagtactagtggataaaagtgaagctgaaaaagttaatcgtctgaaaacaaattacctcgaaaagattgtgccgttgttgaaggaagaattcagttacaccaatattcttcaggttccgaaggtcgaaaagattgtggtaaattgtggtataggagatgctgcacaaaattccaagggtttggatgcagcaatgaatgatttggccttaattacagggcaaaggcctgtgaagactagggctaagaatgctattgctactttcaaaattagagaaggtcaaccgcttggaattgctgttacacttcgagggaatgtaatgtattcgttccttgaccggttaattaatttggggcttcctcgaacgagggacttttcaggcgtaaaccccaatagctttgatggtcatgggaaatatagcattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="-" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="138479" stop="136845"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="138180" g_stop="137883" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="298" r_length="298" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="137882" i_stop="137455" i_length="428">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="137454" g_stop="137145" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="608" r_length="310" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="-" ref_id="SGN-E322615" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322615" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="138180" e_stop="137883"/>
          <exon e_start="137454" e_stop="137145"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTACCCTTTTATTTTTCACACACAGAGAGAAAAAGCTCAGAGAAAATGGCGGCTTCTCCTCTTCTTCTACACTCCACGGCCTCCTCTTTCTACAATGCTGAGTTTCCGGCGTACTCCGTTCGATTGCCGGTCGGAAATACCAAGGTCCGGTCGTCCAATAAATTGACGGTGAAAGCTTCAGCAACAGTACTAGTGGATAAAAGTGAAGCTGAAAAAGTTAATCGTCTGAAAACAAATTACCTCGAAAAGATTGTGCCGTTGTTGAAGGAAGAATTCAGTTACACCAATATTCTTCAGGTAAACTTAGGAGTCGTTTGTCCATTGCATTTTTTTTCCAGAACAGATAAAAATTAGGGCTTGGGAAAGGGAAAATGGGGGAATTGAACAAATTTTTCAGTTTTAAAAAAAGCTTAGTGCAGGTTCAAACACAAATTCAATTTTCAATTATACTTTTCAAGTTAATTTCAATTTCAAAGCATATGTACTTCTTTAGCTTCAAATTTTACAACTTATATCTACAAATTTGAACTGTTTCTTGTTTGTTTGATTAAATGTTGAATTTTAGAGTTGAAATGCTGAGAAATTAGTTTGTTTGACACTATTATCATTTGAGGAGTGAGAAATCACAGTGAATATTAGTTGCATTGACCTATTGCTTCAAACTCTATTATTATTTTTTAGTTTTAATTTGATTTGATACGGAATGTGGAAAAACCGTGTTTTAGGTTCCGAAGGTCGAAAAGATTGTGGTAAATTGTGGTATAGGAGATGCTGCACAAAATTCCAAGGGTTTGGATGCAGCAATGAATGATTTGGCCTTAATTACAGGGCAAAGGCCTGTGAAGACTAGGGCTAAGAATGCTATTGCTACTTTCAAAATTAGAGAAGGTCAACCGCTTGGAATTGCTGTTACACTTCGAGGGAATGTAATGTATTCGTTCCTTGACCGGTTAATTAATTTGGGGCTTCCTCGAACGAGGGACTTTCAAGGCGTAAACCCCAATAGCTTTGATGGTCATGGAAATTATAGCATTG</genome_strand>
        <mrna_strand>TTTTCTTTTTTATTTTTCACACACAGAGAGAAAAAGCTCAGAGAAAATGGCGGCTTCTCCTCTTCTTCTACACTCCACGGCCTCCTCTTTCTACAATGCTGAGTTTCCGGCGTACTCCGTTCGATTGCCGGTCGGAAATACCAAGGTCCGGTCGTCCAATAAATTGACGGTGAAAGCTTCAGCAACAGTACTAGTGGATAAAAGTGAAGCTGAAAAAGTTAATCGTCTGAAAACAAATTACCTCGAAAAGATTGTGCCGTTGTTGAAGGAAGAATTCAGTTACACCAATATTCTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCGAAGGTCGAAAAGATTGTGGTAAATTGTGGTATAGGAGATGCTGCACAAAATTCCAAGGGTTTGGATGCAGCAATGAATGATTTGGCCTTAATTACAGGGCAAAGGCCTGTGAAGACTAGGGCTAAGAATGCTATTGCTACTTTCAAAATTAGAGAAGGTCAACCGCTTGGAATTGCTGTTACACTTCGAGGGAATGTAATGTATTCGTTCCTTGACCGGTTAATTAATTTGGGGCTTCCTCGAACGAGGGACTTTTCAGGCGTAAACCCCAATAGCTTTGATGGTCATGGGAAATATAGCATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E289459" ref_strand="+" ref_description="SGN-E289459 [cLET-3-H8]">
      <seq>agaaaatggcggcttctcctcttcttctacactccacggcctcctctttctacaatgctgagtttccggcgtactccgttcgattgccggtcggaaataccaaggtccggtcgtccaataaattgacggtgaaagcttcagcaacagtactagtggataaaagtgaagctgaaaaagttaatcgtctgaaaacaaattacctcgaaaagattgtgccgttgttgaaggaagaattcagttacaccaatattcttcaggttccgaaggtcgaaaagattgtggtaaattgtggtataggagatgctgcacaaaattccaagggtttggatgcagcaatgaatgatttggccttaattacagggcaaaggcctgtgaagactagggctaagaatgctattgctactttcaaaattagagaaggtcaaccgcttggaattgctgttacacttcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="-" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="138439" stop="136961"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="138139" g_stop="137883" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="257" r_length="257" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="137882" i_stop="137455" i_length="428">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="137454" g_stop="137261" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="451" r_length="194" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="-" ref_id="SGN-E289459" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289459" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="138139" e_stop="137883"/>
          <exon e_start="137454" e_stop="137261"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAATGGCGGCTTCTCCTCTTCTTCTACACTCCACGGCCTCCTCTTTCTACAATGCTGAGTTTCCGGCGTACTCCGTTCGATTGCCGGTCGGAAATACCAAGGTCCGGTCGTCCAATAAATTGACGGTGAAAGCTTCAGCAACAGTACTAGTGGATAAAAGTGAAGCTGAAAAAGTTAATCGTCTGAAAACAAATTACCTCGAAAAGATTGTGCCGTTGTTGAAGGAAGAATTCAGTTACACCAATATTCTTCAGGTAAACTTAGGAGTCGTTTGTCCATTGCATTTTTTTTCCAGAACAGATAAAAATTAGGGCTTGGGAAAGGGAAAATGGGGGAATTGAACAAATTTTTCAGTTTTAAAAAAAGCTTAGTGCAGGTTCAAACACAAATTCAATTTTCAATTATACTTTTCAAGTTAATTTCAATTTCAAAGCATATGTACTTCTTTAGCTTCAAATTTTACAACTTATATCTACAAATTTGAACTGTTTCTTGTTTGTTTGATTAAATGTTGAATTTTAGAGTTGAAATGCTGAGAAATTAGTTTGTTTGACACTATTATCATTTGAGGAGTGAGAAATCACAGTGAATATTAGTTGCATTGACCTATTGCTTCAAACTCTATTATTATTTTTTAGTTTTAATTTGATTTGATACGGAATGTGGAAAAACCGTGTTTTAGGTTCCGAAGGTCGAAAAGATTGTGGTAAATTGTGGTATAGGAGATGCTGCACAAAATTCCAAGGGTTTGGATGCAGCAATGAATGATTTGGCCTTAATTACAGGGCAAAGGCCTGTGAAGACTAGGGCTAAGAATGCTATTGCTACTTTCAAAATTAGAGAAGGTCAACCGCTTGGAATTGCTGTTACACTTCG</genome_strand>
        <mrna_strand>AGAAAATGGCGGCTTCTCCTCTTCTTCTACACTCCACGGCCTCCTCTTTCTACAATGCTGAGTTTCCGGCGTACTCCGTTCGATTGCCGGTCGGAAATACCAAGGTCCGGTCGTCCAATAAATTGACGGTGAAAGCTTCAGCAACAGTACTAGTGGATAAAAGTGAAGCTGAAAAAGTTAATCGTCTGAAAACAAATTACCTCGAAAAGATTGTGCCGTTGTTGAAGGAAGAATTCAGTTACACCAATATTCTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCGAAGGTCGAAAAGATTGTGGTAAATTGTGGTATAGGAGATGCTGCACAAAATTCCAAGGGTTTGGATGCAGCAATGAATGATTTGGCCTTAATTACAGGGCAAAGGCCTGTGAAGACTAGGGCTAAGAATGCTATTGCTACTTTCAAAATTAGAGAAGGTCAACCGCTTGGAATTGCTGTTACACTTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E292760" ref_strand="+" ref_description="SGN-E292760 [cLET-11-F18]">
      <seq>agaaaaagctcagagaaaatggcggcttctcctcttcttctacactccacggcctcctctttctacaatgctgagtttccggcgtactccgttcgattgccggtcggaaataccaaggtccggtcgtccaataaattgacggtgaaagcttcagcaacagtactagtggataaaagtgaagctgaaaaagttaatcgtctgaaaacaaattacctcgaaaagattgtgccgttgttgaaggaagaattcagttacaccaatattcttcaggttccgaaggtcgaaaagattgtggtaaattgtggtataggagatgctgcacaaaattccaagggtttggatgcagcaatgaatgatttggccttaattacagggcaaaggcctgtgaagactagggctaagaatgctattgctactttcaaaattagagaaggtcaaccgcttggaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0068C01-JgDXQ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0068C01.2" temp_strand="-" temp_description="C09SLe0068C01.2  EU180575.2 htgs_phase:2 submitted_to_sgn_as:gb|EU180575| upload_account_name:spain (1 - 140448)">
        <position start="138452" stop="136975"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="138152" g_stop="137883" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="270" r_length="270" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="137882" i_stop="137455" i_length="428">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="137454" g_stop="137275" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="450" r_length="180" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0068C01.2" gen_strand="-" ref_id="SGN-E292760" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0068C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292760" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="138152" e_stop="137883"/>
          <exon e_start="137454" e_stop="137275"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAAAGCTCAGAGAAAATGGCGGCTTCTCCTCTTCTTCTACACTCCACGGCCTCCTCTTTCTACAATGCTGAGTTTCCGGCGTACTCCGTTCGATTGCCGGTCGGAAATACCAAGGTCCGGTCGTCCAATAAATTGACGGTGAAAGCTTCAGCAACAGTACTAGTGGATAAAAGTGAAGCTGAAAAAGTTAATCGTCTGAAAACAAATTACCTCGAAAAGATTGTGCCGTTGTTGAAGGAAGAATTCAGTTACACCAATATTCTTCAGGTAAACTTAGGAGTCGTTTGTCCATTGCATTTTTTTTCCAGAACAGATAAAAATTAGGGCTTGGGAAAGGGAAAATGGGGGAATTGAACAAATTTTTCAGTTTTAAAAAAAGCTTAGTGCAGGTTCAAACACAAATTCAATTTTCAATTATACTTTTCAAGTTAATTTCAATTTCAAAGCATATGTACTTCTTTAGCTTCAAATTTTACAACTTATATCTACAAATTTGAACTGTTTCTTGTTTGTTTGATTAAATGTTGAATTTTAGAGTTGAAATGCTGAGAAATTAGTTTGTTTGACACTATTATCATTTGAGGAGTGAGAAATCACAGTGAATATTAGTTGCATTGACCTATTGCTTCAAACTCTATTATTATTTTTTAGTTTTAATTTGATTTGATACGGAATGTGGAAAAACCGTGTTTTAGGTTCCGAAGGTCGAAAAGATTGTGGTAAATTGTGGTATAGGAGATGCTGCACAAAATTCCAAGGGTTTGGATGCAGCAATGAATGATTTGGCCTTAATTACAGGGCAAAGGCCTGTGAAGACTAGGGCTAAGAATGCTATTGCTACTTTCAAAATTAGAGAAGGTCAACCGCTTGGAATT</genome_strand>
        <mrna_strand>AGAAAAAGCTCAGAGAAAATGGCGGCTTCTCCTCTTCTTCTACACTCCACGGCCTCCTCTTTCTACAATGCTGAGTTTCCGGCGTACTCCGTTCGATTGCCGGTCGGAAATACCAAGGTCCGGTCGTCCAATAAATTGACGGTGAAAGCTTCAGCAACAGTACTAGTGGATAAAAGTGAAGCTGAAAAAGTTAATCGTCTGAAAACAAATTACCTCGAAAAGATTGTGCCGTTGTTGAAGGAAGAATTCAGTTACACCAATATTCTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCGAAGGTCGAAAAGATTGTGGTAAATTGTGGTATAGGAGATGCTGCACAAAATTCCAAGGGTTTGGATGCAGCAATGAATGATTTGGCCTTAATTACAGGGCAAAGGCCTGTGAAGACTAGGGCTAAGAATGCTATTGCTACTTTCAAAATTAGAGAAGGTCAACCGCTTGGAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>109</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="1" PGL_stop="5216"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1" e_stop="456"/>
            <exon e_start="542" e_stop="682"/>
            <exon e_start="764" e_stop="1091"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.916" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.930" e_score="1.000"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="1" e_stop="456" e_length="456"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.916">
            <gDNA_intron_boundary i_start="457" i_stop="541" i_length="85"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="542" e_stop="682" e_length="141"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.930">
            <gDNA_intron_boundary i_start="683" i_stop="763" i_length="81"/>
          </intron>
          <exon e_serial="3" e_score="0.985">
            <gDNA_exon_boundary e_start="764" e_stop="1091" e_length="328"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1" stop="456"/>
              <exon start="542" stop="553"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241639" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1" stop="404"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240425" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1" stop="394"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228117" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1" stop="355"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241238" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1" stop="353"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1" stop="305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305972" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1" stop="277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228217" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22" stop="456"/>
              <exon start="542" stop="682"/>
              <exon start="764" stop="818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22" stop="456"/>
              <exon start="542" stop="682"/>
              <exon start="764" stop="818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274316" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22" stop="456"/>
              <exon start="542" stop="664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34" stop="456"/>
              <exon start="542" stop="680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283470" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59" stop="456"/>
              <exon start="542" stop="619"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231488" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100" stop="456"/>
              <exon start="542" stop="569"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240085" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="234" stop="456"/>
              <exon start="542" stop="682"/>
              <exon start="764" stop="913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233689" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="263" stop="456"/>
              <exon start="542" stop="682"/>
              <exon start="764" stop="913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319456" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="376" stop="456"/>
              <exon start="542" stop="682"/>
              <exon start="764" stop="1021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338088" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="376" stop="456"/>
              <exon start="542" stop="682"/>
              <exon start="764" stop="783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="552" stop="682"/>
              <exon start="764" stop="1088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229809" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="849" stop="1091"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309316" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATAGCTACTCTGTTATTTCTCTACATAACTGTCCTTACTGTTATTGGCTACAAAAGCCAGAGCTCCACTGATCAATGTGGTGGAGTTGGTATTCTTGGAATCGCTTGGGCATTTGGGGGTATGATCTTTGTACTTGTTTACTGTACTGCGGGTATTTCTGGTGGACACATTAACCCTGCTGTTACATTCGGCCTTTTCTTAGCTCGAAAAGTATCGTTGGTTCGAGCTATCATGTACATTGTAGCTCAATGTTTAGGAGCCATTTGTGGTTGTGGATTAGTAAAAGCTTTTCAAAAAGCTTATTATGTCAAATATGGCGGTGGTGCCAATACGTTGAACGATGGATATAGTACTGGTACTGGTTTGGGTGCGGAGATCATTGGAACATTCGTTCTTGTTTACACTGTTTTTGCTGCTACCGATCCTAAGAGGAACGCCAGAGACTCACACGTTCCT : GTACTTGCGCCTCTACCCATTGGATTTGCGGTGTTTATGGTTCACTTGGCTACAATTCCTGTAACTGGAACTGGAATTAATCCTGCAAGGAGTTTTGGTGCTGCTGTTGTTTATGGACATAACAAAGCTTGGGATGATCAA : TGGATATTTTGGGTTGGACCATTTATTGGTGCTGCAATTGCTGCATTTTATCATCAGTTTATTTTGAGAGCTGGAGCTGTTAAAGCACTTGGTTCATTCAGGAGCAATGCTTAATTAGTACAATTATCATGAAGAATTGAAAATTGTACATTATGTTTTTTTTTTTAATGTTATTAGAGTTGTTTAGCATTTGTTTTAGATTTGTTAAACAATGTCATTACTACTTTTTTCTTTTTAATTTGTTTCCTTTTTTTTTTGGTGTGTGTTTCTGTAATTTTTCACTATGCTTTGTTTTGAGTATCTAAATAATGGAATTATGAACAAGGCT</gDNA_template>
            <first_frame> I  A  T  L  L  F  L  Y  I  T  V  L  T  V  I  G  Y  K  S  Q  S  S  T  D  Q  C  G  G  V  G  I  L  G  I  A  W  A  F  G  G  M  I  F  V  L  V  Y  C  T  A  G  I  S  G  G  H  I  N  P  A  V  T  F  G  L  F  L  A  R  K  V  S  L  V  R  A  I  M  Y  I  V  A  Q  C  L  G  A  I  C  G  C  G  L  V  K  A  F  Q  K  A  Y  Y  V  K  Y  G  G  G  A  N  T  L  N  D  G  Y  S  T  G  T  G  L  G  A  E  I  I  G  T  F  V  L  V  Y  T  V  F  A  A  T  D  P  K  R  N  A  R  D  S  H  V  P  :  V  L  A  P  L  P  I  G  F  A  V  F  M  V  H  L  A  T  I  P  V  T  G  T  G  I  N  P  A  R  S  F  G  A  A  V  V  Y  G  H  N  K  A  W  D  D  Q  :  W  I  F  W  V  G  P  F  I  G  A  A  I  A  A  F  Y  H  Q  F  I  L  R  A  G  A  V  K  A  L  G  S  F  R  S  N  A  *  L  V  Q  L  S  *  R  I  E  N  C  T  L  C  F  F  F  *  C  Y  *  S  C  L  A  F  V  L  D  L  L  N  N  V  I  T  T  F  F  F  L  I  C  F  L  F  F  L  V  C  V  S  V  I  F  H  Y  A  L  F  *  V  S  K  *  W  N  Y  E  Q  G  </first_frame>
            <second_frame>  *  L  L  C  Y  F  S  T  *  L  S  L  L  L  L  A  T  K  A  R  A  P  L  I  N  V  V  E  L  V  F  L  E  S  L  G  H  L  G  V  *  S  L  Y  L  F  T  V  L  R  V  F  L  V  D  T  L  T  L  L  L  H  S  A  F  S  *  L  E  K  Y  R  W  F  E  L  S  C  T  L  *  L  N  V  *  E  P  F  V  V  V  D  *  *  K  L  F  K  K  L  I  M  S  N  M  A  V  V  P  I  R  *  T  M  D  I  V  L  V  L  V  W  V  R  R  S  L  E  H  S  F  L  F  T  L  F  L  L  L  P  I  L  R  G  T  P  E  T  H  T  F  L :   Y  L  R  L  Y  P  L  D  L  R  C  L  W  F  T  W  L  Q  F  L  *  L  E  L  E  L  I  L  Q  G  V  L  V  L  L  L  F  M  D  I  T  K  L  G  M  I  N :   G  Y  F  G  L  D  H  L  L  V  L  Q  L  L  H  F  I  I  S  L  F  *  E  L  E  L  L  K  H  L  V  H  S  G  A  M  L  N  *  Y  N  Y  H  E  E  L  K  I  V  H  Y  V  F  F  F  N  V  I  R  V  V  *  H  L  F  *  I  C  *  T  M  S  L  L  L  F  S  F  *  F  V  S  F  F  F  W  C  V  F  L  *  F  F  T  M  L  C  F  E  Y  L  N  N  G  I  M  N  K  A </second_frame>
            <third_frame>   S  Y  S  V  I  S  L  H  N  C  P  Y  C  Y  W  L  Q  K  P  E  L  H  *  S  M  W  W  S  W  Y  S  W  N  R  L  G  I  W  G  Y  D  L  C  T  C  L  L  Y  C  G  Y  F  W  W  T  H  *  P  C  C  Y  I  R  P  F  L  S  S  K  S  I  V  G  S  S  Y  H  V  H  C  S  S  M  F  R  S  H  L  W  L  W  I  S  K  S  F  S  K  S  L  L  C  Q  I  W  R  W  C  Q  Y  V  E  R  W  I  *  Y  W  Y  W  F  G  C  G  D  H  W  N  I  R  S  C  L  H  C  F  C  C  Y  R  S  *  E  E  R  Q  R  L  T  R  S   : C  T  C  A  S  T  H  W  I  C  G  V  Y  G  S  L  G  Y  N  S  C  N  W  N  W  N  *  S  C  K  E  F  W  C  C  C  C  L  W  T  *  Q  S  L  G  *  S   : M  D  I  L  G  W  T  I  Y  W  C  C  N  C  C  I  L  S  S  V  Y  F  E  S  W  S  C  *  S  T  W  F  I  Q  E  Q  C  L  I  S  T  I  I  M  K  N  *  K  L  Y  I  M  F  F  F  L  M  L  L  E  L  F  S  I  C  F  R  F  V  K  Q  C  H  Y  Y  F  F  L  F  N  L  F  P  F  F  F  G  V  C  F  C  N  F  S  L  C  F  V  L  S  I  *  I  M  E  L  *  T  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0068C01.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1" stop="456"/>
                    <exon start="542" stop="682"/>
                    <exon start="764" stop="877"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>708</number_coding_nucleotides>
                  <number_encoded_amino_acids>236</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IATLLFLYITVLTVIGYKSQSSTDQCGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAIMYIVAQCLGAICGCGLVKAFQKAYYVKYGGGANTLNDGYSTGTGLGAEIIGTFVLVYTVFAATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSFGAAVVYGHNKAWDDQWIFWVGPFIGAAIAAFYHQFILRAGAVKALGSFRSNA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="1" e_stop="456"/>
            <exon e_start="542" e_stop="682"/>
            <exon e_start="764" e_stop="917"/>
            <exon e_start="1612" e_stop="1618"/>
            <exon e_start="1889" e_stop="1906"/>
            <exon e_start="4336" e_stop="4375"/>
            <exon e_start="5132" e_stop="5216"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.916" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.930" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.984" e_score="0.987"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.714"/>
          <exon-intron don_prob="0.900" acc_prob="0.842" e_score="0.667"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.650"/>
          <exon-only e_score="0.600"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="1" e_stop="456" e_length="456"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.916">
            <gDNA_intron_boundary i_start="457" i_stop="541" i_length="85"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="542" e_stop="682" e_length="141"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.930">
            <gDNA_intron_boundary i_start="683" i_stop="763" i_length="81"/>
          </intron>
          <exon e_serial="3" e_score="0.987">
            <gDNA_exon_boundary e_start="764" e_stop="917" e_length="154"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.984">
            <gDNA_intron_boundary i_start="918" i_stop="1611" i_length="694"/>
          </intron>
          <exon e_serial="4" e_score="0.714">
            <gDNA_exon_boundary e_start="1612" e_stop="1618" e_length="7"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="1619" i_stop="1888" i_length="270"/>
          </intron>
          <exon e_serial="5" e_score="0.667">
            <gDNA_exon_boundary e_start="1889" e_stop="1906" e_length="18"/>
          </exon>
          <intron i_serial="5" don_prob="0.900" acc_prob="0.842">
            <gDNA_intron_boundary i_start="1907" i_stop="4335" i_length="2429"/>
          </intron>
          <exon e_serial="6" e_score="0.650">
            <gDNA_exon_boundary e_start="4336" e_stop="4375" e_length="40"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="4376" i_stop="5131" i_length="756"/>
          </intron>
          <exon e_serial="7" e_score="0.600">
            <gDNA_exon_boundary e_start="5132" e_stop="5216" e_length="85"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1" stop="456"/>
              <exon start="542" stop="682"/>
              <exon start="764" stop="917"/>
              <exon start="1612" stop="1618"/>
              <exon start="1889" stop="1906"/>
              <exon start="4336" stop="4375"/>
              <exon start="5132" stop="5216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691171" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1" stop="456"/>
              <exon start="542" stop="553"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241639" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1" stop="404"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240425" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1" stop="394"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228117" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1" stop="355"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241238" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1" stop="353"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1" stop="305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305972" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1" stop="277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228217" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22" stop="456"/>
              <exon start="542" stop="682"/>
              <exon start="764" stop="818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22" stop="456"/>
              <exon start="542" stop="682"/>
              <exon start="764" stop="818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274316" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22" stop="456"/>
              <exon start="542" stop="664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34" stop="456"/>
              <exon start="542" stop="680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283470" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59" stop="456"/>
              <exon start="542" stop="619"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231488" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100" stop="456"/>
              <exon start="542" stop="569"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240085" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="234" stop="456"/>
              <exon start="542" stop="682"/>
              <exon start="764" stop="913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233689" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="263" stop="456"/>
              <exon start="542" stop="682"/>
              <exon start="764" stop="913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319456" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="376" stop="456"/>
              <exon start="542" stop="682"/>
              <exon start="764" stop="783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334797" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATAGCTACTCTGTTATTTCTCTACATAACTGTCCTTACTGTTATTGGCTACAAAAGCCAGAGCTCCACTGATCAATGTGGTGGAGTTGGTATTCTTGGAATCGCTTGGGCATTTGGGGGTATGATCTTTGTACTTGTTTACTGTACTGCGGGTATTTCTGGTGGACACATTAACCCTGCTGTTACATTCGGCCTTTTCTTAGCTCGAAAAGTATCGTTGGTTCGAGCTATCATGTACATTGTAGCTCAATGTTTAGGAGCCATTTGTGGTTGTGGATTAGTAAAAGCTTTTCAAAAAGCTTATTATGTCAAATATGGCGGTGGTGCCAATACGTTGAACGATGGATATAGTACTGGTACTGGTTTGGGTGCGGAGATCATTGGAACATTCGTTCTTGTTTACACTGTTTTTGCTGCTACCGATCCTAAGAGGAACGCCAGAGACTCACACGTTCCT : GTACTTGCGCCTCTACCCATTGGATTTGCGGTGTTTATGGTTCACTTGGCTACAATTCCTGTAACTGGAACTGGAATTAATCCTGCAAGGAGTTTTGGTGCTGCTGTTGTTTATGGACATAACAAAGCTTGGGATGATCAA : TGGATATTTTGGGTTGGACCATTTATTGGTGCTGCAATTGCTGCATTTTATCATCAGTTTATTTTGAGAGCTGGAGCTGTTAAAGCACTTGGTTCATTCAGGAGCAATGCTTAATTAGTACAATTATCATGAAGAATTGAAAATTGTACATTAT : GTCTTAG : TTTAAAAAAAATGTCTGT : ATATTGGTGTTAATTAAATACGTTTTGCCTAGTTAGCCAC : TTAAATTAGCAAGTTGACCATCAAAAATTTCATTTTTTTAATTCATAATTAATGTGTCATACATGTTTTTCTCCTTTTTTTTTTT</gDNA_template>
            <first_frame> I  A  T  L  L  F  L  Y  I  T  V  L  T  V  I  G  Y  K  S  Q  S  S  T  D  Q  C  G  G  V  G  I  L  G  I  A  W  A  F  G  G  M  I  F  V  L  V  Y  C  T  A  G  I  S  G  G  H  I  N  P  A  V  T  F  G  L  F  L  A  R  K  V  S  L  V  R  A  I  M  Y  I  V  A  Q  C  L  G  A  I  C  G  C  G  L  V  K  A  F  Q  K  A  Y  Y  V  K  Y  G  G  G  A  N  T  L  N  D  G  Y  S  T  G  T  G  L  G  A  E  I  I  G  T  F  V  L  V  Y  T  V  F  A  A  T  D  P  K  R  N  A  R  D  S  H  V  P  :  V  L  A  P  L  P  I  G  F  A  V  F  M  V  H  L  A  T  I  P  V  T  G  T  G  I  N  P  A  R  S  F  G  A  A  V  V  Y  G  H  N  K  A  W  D  D  Q  :  W  I  F  W  V  G  P  F  I  G  A  A  I  A  A  F  Y  H  Q  F  I  L  R  A  G  A  V  K  A  L  G  S  F  R  S  N  A  *  L  V  Q  L  S  *  R  I  E  N  C  T  L   : C  L  S :   L  K  K  M  S  V :   Y  W  C  *  L  N  T  F  C  L  V  S  H  :  L  N  *  Q  V  D  H  Q  K  F  H  F  F  N  S  *  L  M  C  H  T  C  F  S  P  F  F  F  </first_frame>
            <second_frame>  *  L  L  C  Y  F  S  T  *  L  S  L  L  L  L  A  T  K  A  R  A  P  L  I  N  V  V  E  L  V  F  L  E  S  L  G  H  L  G  V  *  S  L  Y  L  F  T  V  L  R  V  F  L  V  D  T  L  T  L  L  L  H  S  A  F  S  *  L  E  K  Y  R  W  F  E  L  S  C  T  L  *  L  N  V  *  E  P  F  V  V  V  D  *  *  K  L  F  K  K  L  I  M  S  N  M  A  V  V  P  I  R  *  T  M  D  I  V  L  V  L  V  W  V  R  R  S  L  E  H  S  F  L  F  T  L  F  L  L  L  P  I  L  R  G  T  P  E  T  H  T  F  L :   Y  L  R  L  Y  P  L  D  L  R  C  L  W  F  T  W  L  Q  F  L  *  L  E  L  E  L  I  L  Q  G  V  L  V  L  L  L  F  M  D  I  T  K  L  G  M  I  N :   G  Y  F  G  L  D  H  L  L  V  L  Q  L  L  H  F  I  I  S  L  F  *  E  L  E  L  L  K  H  L  V  H  S  G  A  M  L  N  *  Y  N  Y  H  E  E  L  K  I  V  H  Y  :  V  L   : V  *  K  K  C  L   : Y  I  G  V  N  *  I  R  F  A  *  L  A  T :   *  I  S  K  L  T  I  K  N  F  I  F  L  I  H  N  *  C  V  I  H  V  F  L  L  F  F  F </second_frame>
            <third_frame>   S  Y  S  V  I  S  L  H  N  C  P  Y  C  Y  W  L  Q  K  P  E  L  H  *  S  M  W  W  S  W  Y  S  W  N  R  L  G  I  W  G  Y  D  L  C  T  C  L  L  Y  C  G  Y  F  W  W  T  H  *  P  C  C  Y  I  R  P  F  L  S  S  K  S  I  V  G  S  S  Y  H  V  H  C  S  S  M  F  R  S  H  L  W  L  W  I  S  K  S  F  S  K  S  L  L  C  Q  I  W  R  W  C  Q  Y  V  E  R  W  I  *  Y  W  Y  W  F  G  C  G  D  H  W  N  I  R  S  C  L  H  C  F  C  C  Y  R  S  *  E  E  R  Q  R  L  T  R  S   : C  T  C  A  S  T  H  W  I  C  G  V  Y  G  S  L  G  Y  N  S  C  N  W  N  W  N  *  S  C  K  E  F  W  C  C  C  C  L  W  T  *  Q  S  L  G  *  S   : M  D  I  L  G  W  T  I  Y  W  C  C  N  C  C  I  L  S  S  V  Y  F  E  S  W  S  C  *  S  T  W  F  I  Q  E  Q  C  L  I  S  T  I  I  M  K  N  *  K  L  Y  I  M :   S  *  :  F  K  K  N  V  C  :  I  L  V  L  I  K  Y  V  L  P  S  *  P   : L  K  L  A  S  *  P  S  K  I  S  F  F  *  F  I  I  N  V  S  Y  M  F  F  S  F  F  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0068C01.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1" stop="456"/>
                    <exon start="542" stop="682"/>
                    <exon start="764" stop="877"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>708</number_coding_nucleotides>
                  <number_encoded_amino_acids>236</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IATLLFLYITVLTVIGYKSQSSTDQCGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAIMYIVAQCLGAICGCGLVKAFQKAYYVKYGGGANTLNDGYSTGTGLGAEIIGTFVLVYTVFAATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSFGAAVVYGHNKAWDDQWIFWVGPFIGAAIAAFYHQFILRAGAVKALGSFRSNA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="13505" PGL_stop="13851"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13505" e_stop="13851"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="13505" e_stop="13851" e_length="347"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13505" stop="13851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218272" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTAAACTTGCTGAAATTGCAGAGCAGGCGTTGCGGGAAAATCCTGCTGAGCGCCCTGATATGTCACAGTTGGCACTTCTGTTAGAGCAGCTAGTGAAGGATGTAATGATATCATAGACTTTGTGTCGGAGTTTTATATTAAGTTTTTGGTGGATCGAAATTTTTCAGAAAACAAAATCAGAGGATAGCATATTGGTGAGTAACGACGCTCTTCTGCAATTGTACATTTCTATGAGCTCCTTGTAAATTTTGTGCTTATATTTTTTATTTGCCACATTCTTGGACAAATGTCAACAATAAATTTTCAACTTTTTCTTATAGCAATGAAACCTGTGATGCTGCACCAA</gDNA_template>
            <first_frame> L  K  L  A  E  I  A  E  Q  A  L  R  E  N  P  A  E  R  P  D  M  S  Q  L  A  L  L  L  E  Q  L  V  K  D  V  M  I  S  *  T  L  C  R  S  F  I  L  S  F  W  W  I  E  I  F  Q  K  T  K  S  E  D  S  I  L  V  S  N  D  A  L  L  Q  L  Y  I  S  M  S  S  L  *  I  L  C  L  Y  F  L  F  A  T  F  L  D  K  C  Q  Q  *  I  F  N  F  F  L  *  Q  *  N  L  *  C  C  T   </first_frame>
            <second_frame>  L  N  L  L  K  L  Q  S  R  R  C  G  K  I  L  L  S  A  L  I  C  H  S  W  H  F  C  *  S  S  *  *  R  M  *  *  Y  H  R  L  C  V  G  V  L  Y  *  V  F  G  G  S  K  F  F  R  K  Q  N  Q  R  I  A  Y  W  *  V  T  T  L  F  C  N  C  T  F  L  *  A  P  C  K  F  C  A  Y  I  F  Y  L  P  H  S  W  T  N  V  N  N  K  F  S  T  F  S  Y  S  N  E  T  C  D  A  A  P  </second_frame>
            <third_frame>   *  T  C  *  N  C  R  A  G  V  A  G  K  S  C  *  A  P  *  Y  V  T  V  G  T  S  V  R  A  A  S  E  G  C  N  D  I  I  D  F  V  S  E  F  Y  I  K  F  L  V  D  R  N  F  S  E  N  K  I  R  G  *  H  I  G  E  *  R  R  S  S  A  I  V  H  F  Y  E  L  L  V  N  F  V  L  I  F  F  I  C  H  I  L  G  Q  M  S  T  I  N  F  Q  L  F  L  I  A  M  K  P  V  M  L  H  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLe0068C01.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="22247" PGL_stop="21239"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22247" e_stop="22115"/>
            <exon e_start="21857" e_stop="21239"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="0.992"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="22247" e_stop="22115" e_length="133"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="22114" i_stop="21858" i_length="257"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="21857" e_stop="21239" e_length="619"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22247" stop="22115"/>
              <exon start="21857" stop="21239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397108" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21580" stop="21239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394946" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATACGCCATCAGTGGACACTTAACACGCAAGTCAGATGTTTATAGCTTTGGAGTCGTGTTACTAGAAATAGTCAGCGGTTCACCAGTAGTTGCATTCGACATTACTCGAGGAGAGCATTTCCTTGTTAACAAG : GCATGGGAAATGTACAATGCTGACCAACTGTTAGAGCTAGTAGACCCTGTTTTGGATAGAGAACTTCTGAATGACGATGAAGCTCTCCGATTCTTGAAGGTTGGCCTCCTCTGTGTGCAAGAGAACGCCAGCCTCCGCCCCAAAATGTCCATGGTCATCAAGATGTTGAGTCGTGATGGCGCGATAATAGTTGATGAAATGAAGATTACTCAGCCTGGGATTGTTGCTGATCTAATGGATGTTAAGATAGGCAGAAAACACTCTTCTCAAAGCTTTTTTTCTAAAGCTTCTACAAGCATGAGCCCAGGAAGCCCCTTCCAAATAGTTAATAGAAGAAAAAGTAATAGCTAGAAAATAGTCGAGGTACGCACAAGCTGGTTCAGACATCACGATTATAAAAAAAAAATAGAATATACTTGTACAAAGAGTATATTGTGCACACACATAGATACACTTGCACTAAGTTTGATCACTTTTTTTTTTAATTGTTAGATCAGTTGTATATCAATGTGAGCAGCTAGGTCTTTAATTTTTTCAAATTTTTTTTTGGAATATTTGGTTCCATTTGATGTAAAAGCTACCTTTAATAACATTTTTTTTAGTTTTTCAATAATTGAGT</gDNA_template>
            <first_frame> I  R  H  Q  W  T  L  N  T  Q  V  R  C  L  *  L  W  S  R  V  T  R  N  S  Q  R  F  T  S  S  C  I  R  H  Y  S  R  R  A  F  P  C  *  Q   : G  M  G  N  V  Q  C  *  P  T  V  R  A  S  R  P  C  F  G  *  R  T  S  E  *  R  *  S  S  P  I  L  E  G  W  P  P  L  C  A  R  E  R  Q  P  P  P  Q  N  V  H  G  H  Q  D  V  E  S  *  W  R  D  N  S  *  *  N  E  D  Y  S  A  W  D  C  C  *  S  N  G  C  *  D  R  Q  K  T  L  F  S  K  L  F  F  *  S  F  Y  K  H  E  P  R  K  P  L  P  N  S  *  *  K  K  K  *  *  L  E  N  S  R  G  T  H  K  L  V  Q  T  S  R  L  *  K  K  N  R  I  Y  L  Y  K  E  Y  I  V  H  T  H  R  Y  T  C  T  K  F  D  H  F  F  F  *  L  L  D  Q  L  Y  I  N  V  S  S  *  V  F  N  F  F  K  F  F  F  G  I  F  G  S  I  *  C  K  S  Y  L  *  *  H  F  F  *  F  F  N  N  *   </first_frame>
            <second_frame>  Y  A  I  S  G  H  L  T  R  K  S  D  V  Y  S  F  G  V  V  L  L  E  I  V  S  G  S  P  V  V  A  F  D  I  T  R  G  E  H  F  L  V  N  K  :  A  W  E  M  Y  N  A  D  Q  L  L  E  L  V  D  P  V  L  D  R  E  L  L  N  D  D  E  A  L  R  F  L  K  V  G  L  L  C  V  Q  E  N  A  S  L  R  P  K  M  S  M  V  I  K  M  L  S  R  D  G  A  I  I  V  D  E  M  K  I  T  Q  P  G  I  V  A  D  L  M  D  V  K  I  G  R  K  H  S  S  Q  S  F  F  S  K  A  S  T  S  M  S  P  G  S  P  F  Q  I  V  N  R  R  K  S  N  S  *  K  I  V  E  V  R  T  S  W  F  R  H  H  D  Y  K  K  K  I  E  Y  T  C  T  K  S  I  L  C  T  H  I  D  T  L  A  L  S  L  I  T  F  F  F  N  C  *  I  S  C  I  S  M  *  A  A  R  S  L  I  F  S  N  F  F  L  E  Y  L  V  P  F  D  V  K  A  T  F  N  N  I  F  F  S  F  S  I  I  E  </second_frame>
            <third_frame>   T  P  S  V  D  T  *  H  A  S  Q  M  F  I  A  L  E  S  C  Y  *  K  *  S  A  V  H  Q  *  L  H  S  T  L  L  E  E  S  I  S  L  L  T  R :   H  G  K  C  T  M  L  T  N  C  *  S  *  *  T  L  F  W  I  E  N  F  *  M  T  M  K  L  S  D  S  *  R  L  A  S  S  V  C  K  R  T  P  A  S  A  P  K  C  P  W  S  S  R  C  *  V  V  M  A  R  *  *  L  M  K  *  R  L  L  S  L  G  L  L  L  I  *  W  M  L  R  *  A  E  N  T  L  L  K  A  F  F  L  K  L  L  Q  A  *  A  Q  E  A  P  S  K  *  L  I  E  E  K  V  I  A  R  K  *  S  R  Y  A  Q  A  G  S  D  I  T  I  I  K  K  K  *  N  I  L  V  Q  R  V  Y  C  A  H  T  *  I  H  L  H  *  V  *  S  L  F  F  L  I  V  R  S  V  V  Y  Q  C  E  Q  L  G  L  *  F  F  Q  I  F  F  W  N  I  W  F  H  L  M  *  K  L  P  L  I  T  F  F  L  V  F  Q  *  L  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0068C01.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22246" stop="22115"/>
                    <exon start="21857" stop="21507"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>480</number_coding_nucleotides>
                  <number_encoded_amino_acids>160</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YAISGHLTRKSDVYSFGVVLLEIVSGSPVVAFDITRGEHFLVNKAWEMYNADQLLELVDPVLDRELLNDDEALRFLKVGLLCVQENASLRPKMSMVIKMLSRDGAIIVDEMKITQPGIVADLMDVKIGRKHSSQSFFSKASTSMSPGSPFQIVNRRKSNS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="23814" PGL_stop="22450"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23814" e_stop="23653"/>
            <exon e_start="23555" e_stop="23440"/>
            <exon e_start="23310" e_stop="23094"/>
            <exon e_start="22618" e_stop="22450"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="23814" e_stop="23653" e_length="162"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.971">
            <gDNA_intron_boundary i_start="23652" i_stop="23556" i_length="97"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="23555" e_stop="23440" e_length="116"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.996">
            <gDNA_intron_boundary i_start="23439" i_stop="23311" i_length="129"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="23310" e_stop="23094" e_length="217"/>
          </exon>
          <intron i_serial="3" don_prob="0.960" acc_prob="0.996">
            <gDNA_intron_boundary i_start="23093" i_stop="22619" i_length="475"/>
          </intron>
          <exon e_serial="4" e_score="0.988">
            <gDNA_exon_boundary e_start="22618" e_stop="22450" e_length="169"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23814" stop="23653"/>
              <exon start="23555" stop="23440"/>
              <exon start="23310" stop="23094"/>
              <exon start="22618" stop="22450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397109" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23814" stop="23653"/>
              <exon start="23555" stop="23440"/>
              <exon start="23310" stop="23181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394947" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23813" stop="23653"/>
              <exon start="23555" stop="23440"/>
              <exon start="23310" stop="23210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201069" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23472" stop="23440"/>
              <exon start="23310" stop="23094"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304704" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTAATTCTTCTTGCTTTTTTCACATTCTTTCTCCACTAATATTTTTAAAAAATTATTTCTTCATAAAAACTAAATTTCAAGAATCATGAAGTTTTCTTTTCCATTTATCTCATGTTTTAGCTCATCAGCAGATAATTTTGAAGGCAGCCAAATCCCATATG : GTGGACAAATTTCCCAGAATTTTACAGTGTACTCTTACAGTGAATTGAAAGCTGCAACTCATGGATTCAGAGCTTCAAATAAAATTGGAGAAGGAGGTTTTGGTTCTGTTTACAAG : GGTCGGCTGCAAGATGGAACCTTTATGGCTGTAAAAGTTCTTTCAGTTGAATTGGAATCAATGAGAGGGGAAAGGGAATTTGTATCAGAAATAGCTGCATTGTCTGATATCAAACATGAAAACCTTGTCAACCTCAGAGGATGTTGTGTTGATGGAGCACATAGACTTTTAGTCTATGATTACATGGAAAACAACAGTCTTTCCCTAACACTTTTAG : GTGGGGAGCAAAACAGAAGTAAATTTACATGGACGCTTAGGAAAGGAGTTTCGATAGGAATAGCAAAGGGACTTTCATATCTCCATGAAGAAGTGAGTCCACATGTCGTGCATAGAGATATTAAAACCAGCAACATACTCCTTGATGAGAATTTCACACCAAAAATTGC</gDNA_template>
            <first_frame> P  N  S  S  C  F  F  H  I  L  S  P  L  I  F  L  K  N  Y  F  F  I  K  T  K  F  Q  E  S  *  S  F  L  F  H  L  S  H  V  L  A  H  Q  Q  I  I  L  K  A  A  K  S  H  M  :  V  D  K  F  P  R  I  L  Q  C  T  L  T  V  N  *  K  L  Q  L  M  D  S  E  L  Q  I  K  L  E  K  E  V  L  V  L  F  T  R :   V  G  C  K  M  E  P  L  W  L  *  K  F  F  Q  L  N  W  N  Q  *  E  G  K  G  N  L  Y  Q  K  *  L  H  C  L  I  S  N  M  K  T  L  S  T  S  E  D  V  V  L  M  E  H  I  D  F  *  S  M  I  T  W  K  T  T  V  F  P  *  H  F  *  :  V  G  S  K  T  E  V  N  L  H  G  R  L  G  K  E  F  R  *  E  *  Q  R  D  F  H  I  S  M  K  K  *  V  H  M  S  C  I  E  I  L  K  P  A  T  Y  S  L  M  R  I  S  H  Q  K  L  </first_frame>
            <second_frame>  L  I  L  L  A  F  F  T  F  F  L  H  *  Y  F  *  K  I  I  S  S  *  K  L  N  F  K  N  H  E  V  F  F  S  I  Y  L  M  F  *  L  I  S  R  *  F  *  R  Q  P  N  P  I  W :   W  T  N  F  P  E  F  Y  S  V  L  L  Q  *  I  E  S  C  N  S  W  I  Q  S  F  K  *  N  W  R  R  R  F  W  F  C  L  Q   : G  S  A  A  R  W  N  L  Y  G  C  K  S  S  F  S  *  I  G  I  N  E  R  G  K  G  I  C  I  R  N  S  C  I  V  *  Y  Q  T  *  K  P  C  Q  P  Q  R  M  L  C  *  W  S  T  *  T  F  S  L  *  L  H  G  K  Q  Q  S  F  P  N  T  F  R :   W  G  A  K  Q  K  *  I  Y  M  D  A  *  E  R  S  F  D  R  N  S  K  G  T  F  I  S  P  *  R  S  E  S  T  C  R  A  *  R  Y  *  N  Q  Q  H  T  P  *  *  E  F  H  T  K  N  C </second_frame>
            <third_frame>   *  F  F  L  L  F  S  H  S  F  S  T  N  I  F  K  K  L  F  L  H  K  N  *  I  S  R  I  M  K  F  S  F  P  F  I  S  C  F  S  S  S  A  D  N  F  E  G  S  Q  I  P  Y   : G  G  Q  I  S  Q  N  F  T  V  Y  S  Y  S  E  L  K  A  A  T  H  G  F  R  A  S  N  K  I  G  E  G  G  F  G  S  V  Y  K  :  G  R  L  Q  D  G  T  F  M  A  V  K  V  L  S  V  E  L  E  S  M  R  G  E  R  E  F  V  S  E  I  A  A  L  S  D  I  K  H  E  N  L  V  N  L  R  G  C  C  V  D  G  A  H  R  L  L  V  Y  D  Y  M  E  N  N  S  L  S  L  T  L  L   : G  G  E  Q  N  R  S  K  F  T  W  T  L  R  K  G  V  S  I  G  I  A  K  G  L  S  Y  L  H  E  E  V  S  P  H  V  V  H  R  D  I  K  T  S  N  I  L  L  D  E  N  F  T  P  K  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0068C01.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23740" stop="23653"/>
                    <exon start="23555" stop="23440"/>
                    <exon start="23310" stop="23094"/>
                    <exon start="22618" stop="22452"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>588</number_coding_nucleotides>
                  <number_encoded_amino_acids>196</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISRIMKFSFPFISCFSSSADNFEGSQIPYGGQISQNFTVYSYSELKAATHGFRASNKIGEGGFGSVYKGRLQDGTFMAVKVLSVELESMRGEREFVSEIAALSDIKHENLVNLRGCCVDGAHRLLVYDYMENNSLSLTLLGGEQNRSKFTWTLRKGVSIGIAKGLSYLHEEVSPHVVHRDIKTSNILLDENFTPKI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="32298" PGL_stop="33812"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32298" e_stop="32391"/>
            <exon e_start="32988" e_stop="33117"/>
            <exon e_start="33372" e_stop="33406"/>
            <exon e_start="33527" e_stop="33812"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="0.989"/>
          <exon-intron don_prob="0.895" acc_prob="0.000" e_score="0.846"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.600"/>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="32298" e_stop="32391" e_length="94"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="32392" i_stop="32987" i_length="596"/>
          </intron>
          <exon e_serial="2" e_score="0.846">
            <gDNA_exon_boundary e_start="32988" e_stop="33117" e_length="130"/>
          </exon>
          <intron i_serial="2" don_prob="0.895" acc_prob="0.000">
            <gDNA_intron_boundary i_start="33118" i_stop="33371" i_length="254"/>
          </intron>
          <exon e_serial="3" e_score="0.600">
            <gDNA_exon_boundary e_start="33372" e_stop="33406" e_length="35"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="33407" i_stop="33526" i_length="120"/>
          </intron>
          <exon e_serial="4" e_score="0.983">
            <gDNA_exon_boundary e_start="33527" e_stop="33812" e_length="286"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32298" stop="32391"/>
              <exon start="32988" stop="33117"/>
              <exon start="33372" stop="33406"/>
              <exon start="33527" stop="33812"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546282" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32299" stop="32391"/>
              <exon start="32988" stop="33117"/>
              <exon start="33372" stop="33406"/>
              <exon start="33527" stop="33743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358720" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGCTTCAATACATTAGCAGATATTGCCACAAATTCTCTTGTTTGCATGATGATTTCTGCAAAAGCTCCCCAGAATCAGAAACTACGATAACGAA : GTAGGAGAAAGATCACGGAGACCAAGGAAGAGGTTACCATTTGAGGAATCACGAGGGAGATGAAGTAGCGTTCCGTGTTGCAAACATTGTTGCCTTTTGTTCTTTGCCAACTACTGATTCTGATTTACTG : ATATTTACCAATTACCATTGCCGTTTGTCTAACTT : GGCATCAAACCCAACAGTTCCAACTTCCTTCATCCAAGCCTAACCTGTTTTGTTGGTTGACTACCACTTTGCAAAATAGATCTCGCCAATCAGCTGTATTCTGTCGACTATGGTCATATGCTTCCTGCAAAAGCTGACGAAAGCTGGCGTGATTTACATGGAAAGGTGTGCCGATGATGTTGTGAAATAAAGATGTGCCATCACTAGCTTGCGAAAGACGAAGGCCGTCAAATATGACTTTCTGAATGTGCTGATCACCAGTGCCATTATTAAGACTATATGACAG</gDNA_template>
            <first_frame> R  F  N  T  L  A  D  I  A  T  N  S  L  V  C  M  M  I  S  A  K  A  P  Q  N  Q  K  L  R  *  R   : S  R  R  K  I  T  E  T  K  E  E  V  T  I  *  G  I  T  R  E  M  K  *  R  S  V  L  Q  T  L  L  P  F  V  L  C  Q  L  L  I  L  I  Y  * :   Y  L  P  I  T  I  A  V  C  L  T   : W  H  Q  T  Q  Q  F  Q  L  P  S  S  K  P  N  L  F  C  W  L  T  T  T  L  Q  N  R  S  R  Q  S  A  V  F  C  R  L  W  S  Y  A  S  C  K  S  *  R  K  L  A  *  F  T  W  K  G  V  P  M  M  L  *  N  K  D  V  P  S  L  A  C  E  R  R  R  P  S  N  M  T  F  *  M  C  *  S  P  V  P  L  L  R  L  Y  D   </first_frame>
            <second_frame>  A  S  I  H  *  Q  I  L  P  Q  I  L  L  F  A  *  *  F  L  Q  K  L  P  R  I  R  N  Y  D  N  E  :  V  G  E  R  S  R  R  P  R  K  R  L  P  F  E  E  S  R  G  R  *  S  S  V  P  C  C  K  H  C  C  L  L  F  F  A  N  Y  *  F  *  F  T   : D  I  Y  Q  L  P  L  P  F  V  *  L  :  G  I  K  P  N  S  S  N  F  L  H  P  S  L  T  C  F  V  G  *  L  P  L  C  K  I  D  L  A  N  Q  L  Y  S  V  D  Y  G  H  M  L  P  A  K  A  D  E  S  W  R  D  L  H  G  K  V  C  R  *  C  C  E  I  K  M  C  H  H  *  L  A  K  D  E  G  R  Q  I  *  L  S  E  C  A  D  H  Q  C  H  Y  *  D  Y  M  T  </second_frame>
            <third_frame>   L  Q  Y  I  S  R  Y  C  H  K  F  S  C  L  H  D  D  F  C  K  S  S  P  E  S  E  T  T  I  T  K :   *  E  K  D  H  G  D  Q  G  R  G  Y  H  L  R  N  H  E  G  D  E  V  A  F  R  V  A  N  I  V  A  F  C  S  L  P  T  T  D  S  D  L  L  :  I  F  T  N  Y  H  C  R  L  S  N  L :   A  S  N  P  T  V  P  T  S  F  I  Q  A  *  P  V  L  L  V  D  Y  H  F  A  K  *  I  S  P  I  S  C  I  L  S  T  M  V  I  C  F  L  Q  K  L  T  K  A  G  V  I  Y  M  E  R  C  A  D  D  V  V  K  *  R  C  A  I  T  S  L  R  K  T  K  A  V  K  Y  D  F  L  N  V  L  I  T  S  A  I  I  K  T  I  *  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0068C01.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32992" stop="33117"/>
                    <exon start="33372" stop="33406"/>
                    <exon start="33527" stop="33569"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKDHGDQGRGYHLRNHEGDEVAFRVANIVAFCSLPTTDSDLLIFTNYHCRLSNLASNPTVPTSFIQA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="38689" PGL_stop="38052"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="38689" e_stop="38052"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="38689" e_stop="38052" e_length="638"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38689" stop="38052"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740227" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTAATGAAAAAAGTAGGGTTCAATTTGATGACAGATAGGAAAATGATTGATAGTTTTGTCAGTTAGGCTTCAAATATTTCTCATTATCAAGTAGCAGAAAAAATTGAATATATTTTCTCATCATATACCTAAAGCAGAGAGTTAGTCTTTAGCAATATAATATAACAATGTCTCATGCTTTTTCTTCGAAAATTTGCAAGTACGATGTGTTTTTGAGTTTTAGAGGAGAAGATACACGTAGAACATTTGTGAGTCATCTATATAAAGCCCTGGAACAAAGTGGAATCCGCATTTTTAAAGATGATGAGCGATTAGAAAGGGGGAAACCAATTTTTGATGAACTTTTAAAAGCCATAGAAGAGTCTAAAATTGCTATAGTGATATTTTCGAAAAGCTATGCATCGTCGAGATGGTGCTTAGAGGAGCTTGCACACATCATAAAGTGTAGAAACGAATTGGAGCTAATAGTGATTCCAGTTTTCTATGATGTAACTCCATCAGATGTGCGCCATCAAAATCCCCCTTTTGCTGATTCATTTTTACAATACATGAAAGATGATATGGAGAAGGTTCAGAGATGGAGGGCTGCATTTGTGGAGGCTGGGAAAATATCAGGCTATCATTTACTTAATTTCAA</gDNA_template>
            <first_frame> I  N  E  K  S  R  V  Q  F  D  D  R  *  E  N  D  *  *  F  C  Q  L  G  F  K  Y  F  S  L  S  S  S  R  K  N  *  I  Y  F  L  I  I  Y  L  K  Q  R  V  S  L  *  Q  Y  N  I  T  M  S  H  A  F  S  S  K  I  C  K  Y  D  V  F  L  S  F  R  G  E  D  T  R  R  T  F  V  S  H  L  Y  K  A  L  E  Q  S  G  I  R  I  F  K  D  D  E  R  L  E  R  G  K  P  I  F  D  E  L  L  K  A  I  E  E  S  K  I  A  I  V  I  F  S  K  S  Y  A  S  S  R  W  C  L  E  E  L  A  H  I  I  K  C  R  N  E  L  E  L  I  V  I  P  V  F  Y  D  V  T  P  S  D  V  R  H  Q  N  P  P  F  A  D  S  F  L  Q  Y  M  K  D  D  M  E  K  V  Q  R  W  R  A  A  F  V  E  A  G  K  I  S  G  Y  H  L  L  N  F   </first_frame>
            <second_frame>  L  M  K  K  V  G  F  N  L  M  T  D  R  K  M  I  D  S  F  V  S  *  A  S  N  I  S  H  Y  Q  V  A  E  K  I  E  Y  I  F  S  S  Y  T  *  S  R  E  L  V  F  S  N  I  I  *  Q  C  L  M  L  F  L  R  K  F  A  S  T  M  C  F  *  V  L  E  E  K  I  H  V  E  H  L  *  V  I  Y  I  K  P  W  N  K  V  E  S  A  F  L  K  M  M  S  D  *  K  G  G  N  Q  F  L  M  N  F  *  K  P  *  K  S  L  K  L  L  *  *  Y  F  R  K  A  M  H  R  R  D  G  A  *  R  S  L  H  T  S  *  S  V  E  T  N  W  S  *  *  *  F  Q  F  S  M  M  *  L  H  Q  M  C  A  I  K  I  P  L  L  L  I  H  F  Y  N  T  *  K  M  I  W  R  R  F  R  D  G  G  L  H  L  W  R  L  G  K  Y  Q  A  I  I  Y  L  I  S  </second_frame>
            <third_frame>   *  *  K  K  *  G  S  I  *  *  Q  I  G  K  *  L  I  V  L  S  V  R  L  Q  I  F  L  I  I  K  *  Q  K  K  L  N  I  F  S  H  H  I  P  K  A  E  S  *  S  L  A  I  *  Y  N  N  V  S  C  F  F  F  E  N  L  Q  V  R  C  V  F  E  F  *  R  R  R  Y  T  *  N  I  C  E  S  S  I  *  S  P  G  T  K  W  N  P  H  F  *  R  *  *  A  I  R  K  G  E  T  N  F  *  *  T  F  K  S  H  R  R  V  *  N  C  Y  S  D  I  F  E  K  L  C  I  V  E  M  V  L  R  G  A  C  T  H  H  K  V  *  K  R  I  G  A  N  S  D  S  S  F  L  *  C  N  S  I  R  C  A  P  S  K  S  P  F  C  *  F  I  F  T  I  H  E  R  *  Y  G  E  G  S  E  M  E  G  C  I  C  G  G  W  E  N  I  R  L  S  F  T  *  F  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0068C01.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38536" stop="38054"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>483</number_coding_nucleotides>
                  <number_encoded_amino_acids>161</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QYNITMSHAFSSKICKYDVFLSFRGEDTRRTFVSHLYKALEQSGIRIFKDDERLERGKPIFDELLKAIEESKIAIVIFSKSYASSRWCLEELAHIIKCRNELELIVIPVFYDVTPSDVRHQNPPFADSFLQYMKDDMEKVQRWRAAFVEAGKISGYHLLNF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="46806" PGL_stop="57618"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="46806" e_stop="47617"/>
            <exon e_start="50076" e_stop="50574"/>
            <exon e_start="51525" e_stop="51931"/>
            <exon e_start="52668" e_stop="52711"/>
            <exon e_start="57313" e_stop="57357"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.878" e_score="0.997"/>
          <exon-intron don_prob="0.996" acc_prob="0.970" e_score="0.998"/>
          <exon-intron don_prob="0.000" acc_prob="0.218" e_score="0.939"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.614"/>
          <exon-only e_score="0.556"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="46806" e_stop="47617" e_length="812"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.878">
            <gDNA_intron_boundary i_start="47618" i_stop="50075" i_length="2458"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="50076" e_stop="50574" e_length="499"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.970">
            <gDNA_intron_boundary i_start="50575" i_stop="51524" i_length="950"/>
          </intron>
          <exon e_serial="3" e_score="0.939">
            <gDNA_exon_boundary e_start="51525" e_stop="51931" e_length="407"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.218">
            <gDNA_intron_boundary i_start="51932" i_stop="52667" i_length="736"/>
          </intron>
          <exon e_serial="4" e_score="0.614">
            <gDNA_exon_boundary e_start="52668" e_stop="52711" e_length="44"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="52712" i_stop="57312" i_length="4601"/>
          </intron>
          <exon e_serial="5" e_score="0.556">
            <gDNA_exon_boundary e_start="57313" e_stop="57357" e_length="45"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46806" stop="47529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344745" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46826" stop="47570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315288" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46891" stop="47617"/>
              <exon start="50076" stop="50195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726774" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46891" stop="47571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697749" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46900" stop="47308"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46954" stop="47617"/>
              <exon start="50076" stop="50219"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707502" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46961" stop="47617"/>
              <exon start="50076" stop="50231"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730987" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46973" stop="47617"/>
              <exon start="50076" stop="50288"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726784" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47017" stop="47617"/>
              <exon start="50076" stop="50146"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328411" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47126" stop="47617"/>
              <exon start="50076" stop="50100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728857" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47211" stop="47617"/>
              <exon start="50076" stop="50467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728146" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47391" stop="47617"/>
              <exon start="50076" stop="50574"/>
              <exon start="51525" stop="51555"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698053" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47414" stop="47617"/>
              <exon start="50076" stop="50545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710409" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47440" stop="47617"/>
              <exon start="50076" stop="50574"/>
              <exon start="51525" stop="51609"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703324" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47520" stop="47617"/>
              <exon start="50076" stop="50574"/>
              <exon start="51525" stop="51931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700573" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47520" stop="47617"/>
              <exon start="50076" stop="50574"/>
              <exon start="51525" stop="51897"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708234" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47528" stop="47617"/>
              <exon start="50076" stop="50574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293969" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47536" stop="47617"/>
              <exon start="50076" stop="50574"/>
              <exon start="51525" stop="51916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701796" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47536" stop="47617"/>
              <exon start="50076" stop="50574"/>
              <exon start="51525" stop="51784"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704023" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50164" stop="50429"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396218" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50165" stop="50574"/>
              <exon start="51525" stop="51543"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247226" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50495" stop="50574"/>
              <exon start="51525" stop="51931"/>
              <exon start="52668" stop="52711"/>
              <exon start="57313" stop="57357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699869" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51530" stop="51781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395715" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCCACCCCACCCCACCACCCTACTCTCCAACCCCATTATCTTCATCATCATCATCAAGATTCCTCTTTCCACTTTCTCCATAATCATCTCTTCAATTTTTTTACAATATATATCTTGTTTAATCTCATTGTTATCTTTTCTTCTGTGCTGTTTATTCGAAACCCCATTTCGTTTTTTCTTCACTTTTCTACTGTTTCACGTCATAATTTGAGAAAAGGGGCGAAAGGGTGTTGAAATTTTGTTTATTTTCATGAATGGTTTGATTCAAAGTTTGGGAGTTTTCGATTTTTGATTTGGGTTTTTTTGGTTTTAGGTGAAAAGTTTGATTTTTTTTGGTTAAAAATGGGTAATATGGGAAGTAGTGGTGTGAACGGCCGGCGACGGAGTAGTAGCCGGAGGAGCCACCCACCGCCGTCTCCACAACCACAACCACCGCAGCCGGAGATAAACGCGAACAGGTATGTGTTTGCGGCGGCGACGCCTTATCCTACTCAATACCCAAACCCTAATGCTCCGCCGTATTATCAATACCCGGGTTACTATCCTCCACCGCCGGCGGCGATGCCGGTGCCGTTACCAGCTTCGTATGATCATCACCATAGGATGGACCCTGGTCATGCTAATTGGGTTAACGGGCGGTACCCGTGTGGACCGATGATGCCTCCACCAGCTCCATATGTGGAGCATCAAAAAGCTGTAACAATAAGGAATGATGTTAACTTGAAGAAGGAGACTCTAAGGATTGAGCCTGATGAAGCTAATCCTGGCAAGTATCTTGTGGCCTTCACTTTTGATGCCACAGTTCCTGGGAG : CATGACTGTCATTTTCTTTGCAAAAGAAGGTGAAGATTGTTGTTTGACTCCCATGAAGGAAAGCTTGCTTCCACCAGTAACTTTTGAGTTTCAAAAAGGTTTAGCTCAGAAATTTAGGCAACCGTCTGGTACTGGCATTGATTTTTCAATGTTTGAAGAGGCAGAATTGTCCAAAGATAGTGAGGCAGATGTGTATCCACTTGCAGTCAAGGCGGAGGCAACATTAGATAACCCAAGTGAATCAGAGGATGGAAGTGCAGCATCAGGATCCACTAATTCACAGATCACTCAAGCAGTTTTTGAGAAGGACAAAGGTGAGTACCATGTTAGGGCGGTGAAGCAGATCCTGTGGGTCAATGACATGAGGTATGAATTGCAAGAGATTTTTGGGATTGGTAATTCAGTTGAAAGTGACTTCGATGGAAATGATCCCGGAAAAGAATGTGTGATTTGCCTCTCTGAACCTCGGGATACCACTGTACTTCCATGTCGGCACATG : TGTATGTGTAGCGGATGTGCAAAGGTTTTGAGGTTCCAGACGAATCGCTGTCCCATCTGTCGACAGCCAGTTGAACGCCTCCTGGAGATCAAGGTCAGCGAAGGCGCAGCTGAAGAGTAAAAATAGGAAGAGTTGCCATAATCCACTCTTGTATAAATATCAGTATTTCTCTTTCTTGACCTTTTGGTTTTCCTTCTCTATCCATCCCCCCTAGAGTAGAATAATCCAACAGCTGAAAGTCTCTTAGTTATAGTTTGCCAGTCCTACAAATGGATCATCGAGACATGCTGTTGAGCTAAGCCCCCTTTTTTACTTTTTTTTTTCCTTTTAAAGAGTGTTTTTGAATTCCATGCATTTTTTTAAAGAAGTTGTTATAACTATACCTAGTAAATATTCTGTTTGCTTTG : ATAAAAGTTTAATATTAAAGTAGAGAAAAATATAAAAGGACAAT : AAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAG</gDNA_template>
            <first_frame> P  T  P  P  H  H  P  T  L  Q  P  H  Y  L  H  H  H  H  Q  D  S  S  F  H  F  L  H  N  H  L  F  N  F  F  T  I  Y  I  L  F  N  L  I  V  I  F  S  S  V  L  F  I  R  N  P  I  S  F  F  L  H  F  S  T  V  S  R  H  N  L  R  K  G  A  K  G  C  *  N  F  V  Y  F  H  E  W  F  D  S  K  F  G  S  F  R  F  L  I  W  V  F  L  V  L  G  E  K  F  D  F  F  W  L  K  M  G  N  M  G  S  S  G  V  N  G  R  R  R  S  S  S  R  R  S  H  P  P  P  S  P  Q  P  Q  P  P  Q  P  E  I  N  A  N  R  Y  V  F  A  A  A  T  P  Y  P  T  Q  Y  P  N  P  N  A  P  P  Y  Y  Q  Y  P  G  Y  Y  P  P  P  P  A  A  M  P  V  P  L  P  A  S  Y  D  H  H  H  R  M  D  P  G  H  A  N  W  V  N  G  R  Y  P  C  G  P  M  M  P  P  P  A  P  Y  V  E  H  Q  K  A  V  T  I  R  N  D  V  N  L  K  K  E  T  L  R  I  E  P  D  E  A  N  P  G  K  Y  L  V  A  F  T  F  D  A  T  V  P  G  S :   M  T  V  I  F  F  A  K  E  G  E  D  C  C  L  T  P  M  K  E  S  L  L  P  P  V  T  F  E  F  Q  K  G  L  A  Q  K  F  R  Q  P  S  G  T  G  I  D  F  S  M  F  E  E  A  E  L  S  K  D  S  E  A  D  V  Y  P  L  A  V  K  A  E  A  T  L  D  N  P  S  E  S  E  D  G  S  A  A  S  G  S  T  N  S  Q  I  T  Q  A  V  F  E  K  D  K  G  E  Y  H  V  R  A  V  K  Q  I  L  W  V  N  D  M  R  Y  E  L  Q  E  I  F  G  I  G  N  S  V  E  S  D  F  D  G  N  D  P  G  K  E  C  V  I  C  L  S  E  P  R  D  T  T  V  L  P  C  R  H  M  :  C  M  C  S  G  C  A  K  V  L  R  F  Q  T  N  R  C  P  I  C  R  Q  P  V  E  R  L  L  E  I  K  V  S  E  G  A  A  E  E  *  K  *  E  E  L  P  *  S  T  L  V  *  I  S  V  F  L  F  L  D  L  L  V  F  L  L  Y  P  S  P  L  E  *  N  N  P  T  A  E  S  L  L  V  I  V  C  Q  S  Y  K  W  I  I  E  T  C  C  *  A  K  P  P  F  L  L  F  F  F  L  L  K  S  V  F  E  F  H  A  F  F  *  R  S  C  Y  N  Y  T  *  *  I  F  C  L  L  * :   *  K  F  N  I  K  V  E  K  N  I  K  G  Q   : *  E  S  D  M  G  S  G  H  T  A  F  G  E  K  </first_frame>
            <second_frame>  P  P  H  P  T  T  L  L  S  N  P  I  I  F  I  I  I  I  K  I  P  L  S  T  F  S  I  I  I  S  S  I  F  L  Q  Y  I  S  C  L  I  S  L  L  S  F  L  L  C  C  L  F  E  T  P  F  R  F  F  F  T  F  L  L  F  H  V  I  I  *  E  K  G  R  K  G  V  E  I  L  F  I  F  M  N  G  L  I  Q  S  L  G  V  F  D  F  *  F  G  F  F  W  F  *  V  K  S  L  I  F  F  G  *  K  W  V  I  W  E  V  V  V  *  T  A  G  D  G  V  V  A  G  G  A  T  H  R  R  L  H  N  H  N  H  R  S  R  R  *  T  R  T  G  M  C  L  R  R  R  R  L  I  L  L  N  T  Q  T  L  M  L  R  R  I  I  N  T  R  V  T  I  L  H  R  R  R  R  C  R  C  R  Y  Q  L  R  M  I  I  T  I  G  W  T  L  V  M  L  I  G  L  T  G  G  T  R  V  D  R  *  C  L  H  Q  L  H  M  W  S  I  K  K  L  *  Q  *  G  M  M  L  T  *  R  R  R  L  *  G  L  S  L  M  K  L  I  L  A  S  I  L  W  P  S  L  L  M  P  Q  F  L  G   : A  *  L  S  F  S  L  Q  K  K  V  K  I  V  V  *  L  P  *  R  K  A  C  F  H  Q  *  L  L  S  F  K  K  V  *  L  R  N  L  G  N  R  L  V  L  A  L  I  F  Q  C  L  K  R  Q  N  C  P  K  I  V  R  Q  M  C  I  H  L  Q  S  R  R  R  Q  H  *  I  T  Q  V  N  Q  R  M  E  V  Q  H  Q  D  P  L  I  H  R  S  L  K  Q  F  L  R  R  T  K  V  S  T  M  L  G  R  *  S  R  S  C  G  S  M  T  *  G  M  N  C  K  R  F  L  G  L  V  I  Q  L  K  V  T  S  M  E  M  I  P  E  K  N  V  *  F  A  S  L  N  L  G  I  P  L  Y  F  H  V  G  T  C :   V  C  V  A  D  V  Q  R  F  *  G  S  R  R  I  A  V  P  S  V  D  S  Q  L  N  A  S  W  R  S  R  S  A  K  A  Q  L  K  S  K  N  R  K  S  C  H  N  P  L  L  Y  K  Y  Q  Y  F  S  F  L  T  F  W  F  S  F  S  I  H  P  P  *  S  R  I  I  Q  Q  L  K  V  S  *  L  *  F  A  S  P  T  N  G  S  S  R  H  A  V  E  L  S  P  L  F  Y  F  F  F  S  F  *  R  V  F  L  N  S  M  H  F  F  K  E  V  V  I  T  I  P  S  K  Y  S  V  C  F   : D  K  S  L  I  L  K  *  R  K  I  *  K  D  N  :  K  N  Q  T  W  D  L  V  I  Q  P  S  G  R  K </second_frame>
            <third_frame>   H  P  T  P  P  P  Y  S  P  T  P  L  S  S  S  S  S  S  R  F  L  F  P  L  S  P  *  S  S  L  Q  F  F  Y  N  I  Y  L  V  *  S  H  C  Y  L  F  F  C  A  V  Y  S  K  P  H  F  V  F  S  S  L  F  Y  C  F  T  S  *  F  E  K  R  G  E  R  V  L  K  F  C  L  F  S  *  M  V  *  F  K  V  W  E  F  S  I  F  D  L  G  F  F  G  F  R  *  K  V  *  F  F  L  V  K  N  G  *  Y  G  K  *  W  C  E  R  P  A  T  E  *  *  P  E  E  P  P  T  A  V  S  T  T  T  T  T  A  A  G  D  K  R  E  Q  V  C  V  C  G  G  D  A  L  S  Y  S  I  P  K  P  *  C  S  A  V  L  S  I  P  G  L  L  S  S  T  A  G  G  D  A  G  A  V  T  S  F  V  *  S  S  P  *  D  G  P  W  S  C  *  L  G  *  R  A  V  P  V  W  T  D  D  A  S  T  S  S  I  C  G  A  S  K  S  C  N  N  K  E  *  C  *  L  E  E  G  D  S  K  D  *  A  *  *  S  *  S  W  Q  V  S  C  G  L  H  F  *  C  H  S  S  W  E  :  H  D  C  H  F  L  C  K  R  R  *  R  L  L  F  D  S  H  E  G  K  L  A  S  T  S  N  F  *  V  S  K  R  F  S  S  E  I  *  A  T  V  W  Y  W  H  *  F  F  N  V  *  R  G  R  I  V  Q  R  *  *  G  R  C  V  S  T  C  S  Q  G  G  G  N  I  R  *  P  K  *  I  R  G  W  K  C  S  I  R  I  H  *  F  T  D  H  S  S  S  F  *  E  G  Q  R  *  V  P  C  *  G  G  E  A  D  P  V  G  Q  *  H  E  V  *  I  A  R  D  F  W  D  W  *  F  S  *  K  *  L  R  W  K  *  S  R  K  R  M  C  D  L  P  L  *  T  S  G  Y  H  C  T  S  M  S  A  H   : V  Y  V  *  R  M  C  K  G  F  E  V  P  D  E  S  L  S  H  L  S  T  A  S  *  T  P  P  G  D  Q  G  Q  R  R  R  S  *  R  V  K  I  G  R  V  A  I  I  H  S  C  I  N  I  S  I  S  L  S  *  P  F  G  F  P  S  L  S  I  P  P  R  V  E  *  S  N  S  *  K  S  L  S  Y  S  L  P  V  L  Q  M  D  H  R  D  M  L  L  S  *  A  P  F  F  T  F  F  F  P  F  K  E  C  F  *  I  P  C  I  F  L  K  K  L  L  *  L  Y  L  V  N  I  L  F  A  L  :  I  K  V  *  Y  *  S  R  E  K  Y  K  R  T  I :   R  I  R  H  G  I  W  S  Y  S  L  R  G  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0068C01.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47040" stop="47617"/>
                    <exon start="50076" stop="50574"/>
                    <exon start="51525" stop="51644"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1194</number_coding_nucleotides>
                  <number_encoded_amino_acids>398</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NFVYFHEWFDSKFGSFRFLIWVFLVLGEKFDFFWLKMGNMGSSGVNGRRRSSSRRSHPPPSPQPQPPQPEINANRYVFAAATPYPTQYPNPNAPPYYQYPGYYPPPPAAMPVPLPASYDHHHRMDPGHANWVNGRYPCGPMMPPPAPYVEHQKAVTIRNDVNLKKETLRIEPDEANPGKYLVAFTFDATVPGSMTVIFFAKEGEDCCLTPMKESLLPPVTFEFQKGLAQKFRQPSGTGIDFSMFEEAELSKDSEADVYPLAVKAEATLDNPSESEDGSAASGSTNSQITQAVFEKDKGEYHVRAVKQILWVNDMRYELQEIFGIGNSVESDFDGNDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKVSEGAAEE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0068C01.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46806" stop="47039"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PTPPHHPTLQPHYLHHHHQDSSFHFLHNHLFNFFTIYILFNLIVIFSSVLFIRNPISFFLHFSTVSRHNLRKGAKGC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="46806" e_stop="47617"/>
            <exon e_start="50076" e_stop="50574"/>
            <exon e_start="51525" e_stop="51962"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.878" e_score="0.997"/>
          <exon-intron don_prob="0.996" acc_prob="0.970" e_score="0.998"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="46806" e_stop="47617" e_length="812"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.878">
            <gDNA_intron_boundary i_start="47618" i_stop="50075" i_length="2458"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="50076" e_stop="50574" e_length="499"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.970">
            <gDNA_intron_boundary i_start="50575" i_stop="51524" i_length="950"/>
          </intron>
          <exon e_serial="3" e_score="0.991">
            <gDNA_exon_boundary e_start="51525" e_stop="51962" e_length="438"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46806" stop="47529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344745" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46826" stop="47570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315288" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46891" stop="47617"/>
              <exon start="50076" stop="50195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726774" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46891" stop="47571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697749" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46900" stop="47308"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46954" stop="47617"/>
              <exon start="50076" stop="50219"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707502" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46961" stop="47617"/>
              <exon start="50076" stop="50231"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730987" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46973" stop="47617"/>
              <exon start="50076" stop="50288"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726784" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47017" stop="47617"/>
              <exon start="50076" stop="50146"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328411" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47126" stop="47617"/>
              <exon start="50076" stop="50100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728857" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47211" stop="47617"/>
              <exon start="50076" stop="50467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728146" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47391" stop="47617"/>
              <exon start="50076" stop="50574"/>
              <exon start="51525" stop="51555"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698053" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47414" stop="47617"/>
              <exon start="50076" stop="50545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710409" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47440" stop="47617"/>
              <exon start="50076" stop="50574"/>
              <exon start="51525" stop="51609"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703324" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47520" stop="47617"/>
              <exon start="50076" stop="50574"/>
              <exon start="51525" stop="51931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700573" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47520" stop="47617"/>
              <exon start="50076" stop="50574"/>
              <exon start="51525" stop="51897"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708234" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47528" stop="47617"/>
              <exon start="50076" stop="50574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293969" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47536" stop="47617"/>
              <exon start="50076" stop="50574"/>
              <exon start="51525" stop="51916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701796" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47536" stop="47617"/>
              <exon start="50076" stop="50574"/>
              <exon start="51525" stop="51784"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704023" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50164" stop="50429"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396218" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50165" stop="50574"/>
              <exon start="51525" stop="51543"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247226" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50509" stop="50574"/>
              <exon start="51525" stop="51962"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396217" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51530" stop="51781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395715" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCCACCCCACCCCACCACCCTACTCTCCAACCCCATTATCTTCATCATCATCATCAAGATTCCTCTTTCCACTTTCTCCATAATCATCTCTTCAATTTTTTTACAATATATATCTTGTTTAATCTCATTGTTATCTTTTCTTCTGTGCTGTTTATTCGAAACCCCATTTCGTTTTTTCTTCACTTTTCTACTGTTTCACGTCATAATTTGAGAAAAGGGGCGAAAGGGTGTTGAAATTTTGTTTATTTTCATGAATGGTTTGATTCAAAGTTTGGGAGTTTTCGATTTTTGATTTGGGTTTTTTTGGTTTTAGGTGAAAAGTTTGATTTTTTTTGGTTAAAAATGGGTAATATGGGAAGTAGTGGTGTGAACGGCCGGCGACGGAGTAGTAGCCGGAGGAGCCACCCACCGCCGTCTCCACAACCACAACCACCGCAGCCGGAGATAAACGCGAACAGGTATGTGTTTGCGGCGGCGACGCCTTATCCTACTCAATACCCAAACCCTAATGCTCCGCCGTATTATCAATACCCGGGTTACTATCCTCCACCGCCGGCGGCGATGCCGGTGCCGTTACCAGCTTCGTATGATCATCACCATAGGATGGACCCTGGTCATGCTAATTGGGTTAACGGGCGGTACCCGTGTGGACCGATGATGCCTCCACCAGCTCCATATGTGGAGCATCAAAAAGCTGTAACAATAAGGAATGATGTTAACTTGAAGAAGGAGACTCTAAGGATTGAGCCTGATGAAGCTAATCCTGGCAAGTATCTTGTGGCCTTCACTTTTGATGCCACAGTTCCTGGGAG : CATGACTGTCATTTTCTTTGCAAAAGAAGGTGAAGATTGTTGTTTGACTCCCATGAAGGAAAGCTTGCTTCCACCAGTAACTTTTGAGTTTCAAAAAGGTTTAGCTCAGAAATTTAGGCAACCGTCTGGTACTGGCATTGATTTTTCAATGTTTGAAGAGGCAGAATTGTCCAAAGATAGTGAGGCAGATGTGTATCCACTTGCAGTCAAGGCGGAGGCAACATTAGATAACCCAAGTGAATCAGAGGATGGAAGTGCAGCATCAGGATCCACTAATTCACAGATCACTCAAGCAGTTTTTGAGAAGGACAAAGGTGAGTACCATGTTAGGGCGGTGAAGCAGATCCTGTGGGTCAATGACATGAGGTATGAATTGCAAGAGATTTTTGGGATTGGTAATTCAGTTGAAAGTGACTTCGATGGAAATGATCCCGGAAAAGAATGTGTGATTTGCCTCTCTGAACCTCGGGATACCACTGTACTTCCATGTCGGCACATG : TGTATGTGTAGCGGATGTGCAAAGGTTTTGAGGTTCCAGACGAATCGCTGTCCCATCTGTCGACAGCCAGTTGAACGCCTCCTGGAGATCAAGGTCAGCGAAGGCGCAGCTGAAGAGTAAAAATAGGAAGAGTTGCCATAATCCACTCTTGTATAAATATCAGTATTTCTCTTTCTTGACCTTTTGGTTTTCCTTCTCTATCCATCCCCCCTAGAGTAGAATAATCCAACAGCTGAAAGTCTCTTAGTTATAGTTTGCCAGTCCTACAAATGGATCATCGAGACATGCTGTTGAGCTAAGCCCCCTTTTTTACTTTTTTTTTTCCTTTTAAAGAGTGTTTTTGAATTCCATGCATTTTTTTAAAGAAGTTGTTATAACTATACCTAGTAAATATTCTGTTTGCTTTGATAACACTTTTTTTGAGCTTAGGGTCTATTC</gDNA_template>
            <first_frame> P  T  P  P  H  H  P  T  L  Q  P  H  Y  L  H  H  H  H  Q  D  S  S  F  H  F  L  H  N  H  L  F  N  F  F  T  I  Y  I  L  F  N  L  I  V  I  F  S  S  V  L  F  I  R  N  P  I  S  F  F  L  H  F  S  T  V  S  R  H  N  L  R  K  G  A  K  G  C  *  N  F  V  Y  F  H  E  W  F  D  S  K  F  G  S  F  R  F  L  I  W  V  F  L  V  L  G  E  K  F  D  F  F  W  L  K  M  G  N  M  G  S  S  G  V  N  G  R  R  R  S  S  S  R  R  S  H  P  P  P  S  P  Q  P  Q  P  P  Q  P  E  I  N  A  N  R  Y  V  F  A  A  A  T  P  Y  P  T  Q  Y  P  N  P  N  A  P  P  Y  Y  Q  Y  P  G  Y  Y  P  P  P  P  A  A  M  P  V  P  L  P  A  S  Y  D  H  H  H  R  M  D  P  G  H  A  N  W  V  N  G  R  Y  P  C  G  P  M  M  P  P  P  A  P  Y  V  E  H  Q  K  A  V  T  I  R  N  D  V  N  L  K  K  E  T  L  R  I  E  P  D  E  A  N  P  G  K  Y  L  V  A  F  T  F  D  A  T  V  P  G  S :   M  T  V  I  F  F  A  K  E  G  E  D  C  C  L  T  P  M  K  E  S  L  L  P  P  V  T  F  E  F  Q  K  G  L  A  Q  K  F  R  Q  P  S  G  T  G  I  D  F  S  M  F  E  E  A  E  L  S  K  D  S  E  A  D  V  Y  P  L  A  V  K  A  E  A  T  L  D  N  P  S  E  S  E  D  G  S  A  A  S  G  S  T  N  S  Q  I  T  Q  A  V  F  E  K  D  K  G  E  Y  H  V  R  A  V  K  Q  I  L  W  V  N  D  M  R  Y  E  L  Q  E  I  F  G  I  G  N  S  V  E  S  D  F  D  G  N  D  P  G  K  E  C  V  I  C  L  S  E  P  R  D  T  T  V  L  P  C  R  H  M  :  C  M  C  S  G  C  A  K  V  L  R  F  Q  T  N  R  C  P  I  C  R  Q  P  V  E  R  L  L  E  I  K  V  S  E  G  A  A  E  E  *  K  *  E  E  L  P  *  S  T  L  V  *  I  S  V  F  L  F  L  D  L  L  V  F  L  L  Y  P  S  P  L  E  *  N  N  P  T  A  E  S  L  L  V  I  V  C  Q  S  Y  K  W  I  I  E  T  C  C  *  A  K  P  P  F  L  L  F  F  F  L  L  K  S  V  F  E  F  H  A  F  F  *  R  S  C  Y  N  Y  T  *  *  I  F  C  L  L  *  *  H  F  F  *  A  *  G  L  F </first_frame>
            <second_frame>  P  P  H  P  T  T  L  L  S  N  P  I  I  F  I  I  I  I  K  I  P  L  S  T  F  S  I  I  I  S  S  I  F  L  Q  Y  I  S  C  L  I  S  L  L  S  F  L  L  C  C  L  F  E  T  P  F  R  F  F  F  T  F  L  L  F  H  V  I  I  *  E  K  G  R  K  G  V  E  I  L  F  I  F  M  N  G  L  I  Q  S  L  G  V  F  D  F  *  F  G  F  F  W  F  *  V  K  S  L  I  F  F  G  *  K  W  V  I  W  E  V  V  V  *  T  A  G  D  G  V  V  A  G  G  A  T  H  R  R  L  H  N  H  N  H  R  S  R  R  *  T  R  T  G  M  C  L  R  R  R  R  L  I  L  L  N  T  Q  T  L  M  L  R  R  I  I  N  T  R  V  T  I  L  H  R  R  R  R  C  R  C  R  Y  Q  L  R  M  I  I  T  I  G  W  T  L  V  M  L  I  G  L  T  G  G  T  R  V  D  R  *  C  L  H  Q  L  H  M  W  S  I  K  K  L  *  Q  *  G  M  M  L  T  *  R  R  R  L  *  G  L  S  L  M  K  L  I  L  A  S  I  L  W  P  S  L  L  M  P  Q  F  L  G   : A  *  L  S  F  S  L  Q  K  K  V  K  I  V  V  *  L  P  *  R  K  A  C  F  H  Q  *  L  L  S  F  K  K  V  *  L  R  N  L  G  N  R  L  V  L  A  L  I  F  Q  C  L  K  R  Q  N  C  P  K  I  V  R  Q  M  C  I  H  L  Q  S  R  R  R  Q  H  *  I  T  Q  V  N  Q  R  M  E  V  Q  H  Q  D  P  L  I  H  R  S  L  K  Q  F  L  R  R  T  K  V  S  T  M  L  G  R  *  S  R  S  C  G  S  M  T  *  G  M  N  C  K  R  F  L  G  L  V  I  Q  L  K  V  T  S  M  E  M  I  P  E  K  N  V  *  F  A  S  L  N  L  G  I  P  L  Y  F  H  V  G  T  C :   V  C  V  A  D  V  Q  R  F  *  G  S  R  R  I  A  V  P  S  V  D  S  Q  L  N  A  S  W  R  S  R  S  A  K  A  Q  L  K  S  K  N  R  K  S  C  H  N  P  L  L  Y  K  Y  Q  Y  F  S  F  L  T  F  W  F  S  F  S  I  H  P  P  *  S  R  I  I  Q  Q  L  K  V  S  *  L  *  F  A  S  P  T  N  G  S  S  R  H  A  V  E  L  S  P  L  F  Y  F  F  F  S  F  *  R  V  F  L  N  S  M  H  F  F  K  E  V  V  I  T  I  P  S  K  Y  S  V  C  F  D  N  T  F  F  E  L  R  V  Y   </second_frame>
            <third_frame>   H  P  T  P  P  P  Y  S  P  T  P  L  S  S  S  S  S  S  R  F  L  F  P  L  S  P  *  S  S  L  Q  F  F  Y  N  I  Y  L  V  *  S  H  C  Y  L  F  F  C  A  V  Y  S  K  P  H  F  V  F  S  S  L  F  Y  C  F  T  S  *  F  E  K  R  G  E  R  V  L  K  F  C  L  F  S  *  M  V  *  F  K  V  W  E  F  S  I  F  D  L  G  F  F  G  F  R  *  K  V  *  F  F  L  V  K  N  G  *  Y  G  K  *  W  C  E  R  P  A  T  E  *  *  P  E  E  P  P  T  A  V  S  T  T  T  T  T  A  A  G  D  K  R  E  Q  V  C  V  C  G  G  D  A  L  S  Y  S  I  P  K  P  *  C  S  A  V  L  S  I  P  G  L  L  S  S  T  A  G  G  D  A  G  A  V  T  S  F  V  *  S  S  P  *  D  G  P  W  S  C  *  L  G  *  R  A  V  P  V  W  T  D  D  A  S  T  S  S  I  C  G  A  S  K  S  C  N  N  K  E  *  C  *  L  E  E  G  D  S  K  D  *  A  *  *  S  *  S  W  Q  V  S  C  G  L  H  F  *  C  H  S  S  W  E  :  H  D  C  H  F  L  C  K  R  R  *  R  L  L  F  D  S  H  E  G  K  L  A  S  T  S  N  F  *  V  S  K  R  F  S  S  E  I  *  A  T  V  W  Y  W  H  *  F  F  N  V  *  R  G  R  I  V  Q  R  *  *  G  R  C  V  S  T  C  S  Q  G  G  G  N  I  R  *  P  K  *  I  R  G  W  K  C  S  I  R  I  H  *  F  T  D  H  S  S  S  F  *  E  G  Q  R  *  V  P  C  *  G  G  E  A  D  P  V  G  Q  *  H  E  V  *  I  A  R  D  F  W  D  W  *  F  S  *  K  *  L  R  W  K  *  S  R  K  R  M  C  D  L  P  L  *  T  S  G  Y  H  C  T  S  M  S  A  H   : V  Y  V  *  R  M  C  K  G  F  E  V  P  D  E  S  L  S  H  L  S  T  A  S  *  T  P  P  G  D  Q  G  Q  R  R  R  S  *  R  V  K  I  G  R  V  A  I  I  H  S  C  I  N  I  S  I  S  L  S  *  P  F  G  F  P  S  L  S  I  P  P  R  V  E  *  S  N  S  *  K  S  L  S  Y  S  L  P  V  L  Q  M  D  H  R  D  M  L  L  S  *  A  P  F  F  T  F  F  F  P  F  K  E  C  F  *  I  P  C  I  F  L  K  K  L  L  *  L  Y  L  V  N  I  L  F  A  L  I  T  L  F  L  S  L  G  S  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0068C01.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47040" stop="47617"/>
                    <exon start="50076" stop="50574"/>
                    <exon start="51525" stop="51644"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1194</number_coding_nucleotides>
                  <number_encoded_amino_acids>398</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NFVYFHEWFDSKFGSFRFLIWVFLVLGEKFDFFWLKMGNMGSSGVNGRRRSSSRRSHPPPSPQPQPPQPEINANRYVFAAATPYPTQYPNPNAPPYYQYPGYYPPPPAAMPVPLPASYDHHHRMDPGHANWVNGRYPCGPMMPPPAPYVEHQKAVTIRNDVNLKKETLRIEPDEANPGKYLVAFTFDATVPGSMTVIFFAKEGEDCCLTPMKESLLPPVTFEFQKGLAQKFRQPSGTGIDFSMFEEAELSKDSEADVYPLAVKAEATLDNPSESEDGSAASGSTNSQITQAVFEKDKGEYHVRAVKQILWVNDMRYELQEIFGIGNSVESDFDGNDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKVSEGAAEE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0068C01.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46806" stop="47039"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PTPPHHPTLQPHYLHHHHQDSSFHFLHNHLFNFFTIYILFNLIVIFSSVLFIRNPISFFLHFSTVSRHNLRKGAKGC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="56970" e_stop="57618"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="56970" e_stop="57618" e_length="649"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56970" stop="57618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56971" stop="57355"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284788" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACGTCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCAAAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGCCAGGGTTGTTGCCAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</gDNA_template>
            <first_frame> Y  V  R  N  W  E  S  *  Q  T  G  G  V  S  S  H  S  E  R  E  R  F  K  G  T  *  R  G  G  S  R  A  K  D  *  N  *  Y  S  R  I  Y  A  I  R  Y  P  S  E  Y  S  S  R  S  A  K  E  G  W  S  S  A  T  Y  E  V  W  F  *  G  H  G  G  L  C  T  A  G  C  *  R  G  R  Y  I  *  A  V  Y  L  Q  R  S  H  F  K  F  *  F  *  K  M  V  C  R  Y  G  R  *  D  G  V  P  T  Q  E  S  D  M  G  S  G  H  T  A  F  G  E  K  D  Y  Y  L  Q  M  G  F  Q  E  E  G  R  D  I  T  S  R  R  S  Q  V  *  S  Q  G  C  C  Q  R  F  Q  P  K  R  G  S  G  L  Q  *  D  L  L  T  S  G  Q  T  Y  F  H  P  S  V  T  S  D  S  C  T  S  E  S  G  A  *  T  T  *  C  E  D  S  V  S  T  W  R  V  G  G  R  D  I  H  D  </first_frame>
            <second_frame>  T  S  E  T  G  S  L  D  K  Q  V  E  F  Q  V  I  Q  N  E  S  D  L  K  E  P  E  E  E  D  Q  E  P  K  T  E  T  D  I  P  E  S  M  P  S  D  I  H  Q  S  I  A  Q  D  R  P  R  R  V  G  V  R  P  P  T  R  Y  G  F  E  D  M  V  G  Y  A  L  Q  V  A  E  E  V  D  T  S  E  P  S  T  Y  K  E  A  I  L  S  S  D  S  E  K  W  F  A  A  M  G  D  E  M  E  S  L  H  K  N  Q  T  W  D  L  V  I  Q  P  S  G  R  K  I  I  T  C  K  W  V  F  K  K  K  E  G  I  S  P  A  E  G  V  K  Y  K  A  R  V  V  A  R  G  F  N  Q  R  E  G  V  D  Y  N  E  I  F  S  P  V  V  R  H  T  S  I  R  V  L  L  A  I  V  A  H  Q  N  L  E  L  E  Q  L  D  V  K  T  A  F  L  H  G  E  L  E  E  E  I  Y  M  T </second_frame>
            <third_frame>   R  Q  K  L  G  V  L  T  N  R  W  S  F  K  S  F  R  T  R  A  I  *  R  N  L  K  R  R  I  K  S  Q  R  L  K  L  I  F  Q  N  L  C  H  Q  I  S  I  R  V  *  L  K  I  G  Q  G  G  L  E  F  G  H  L  R  G  M  V  L  R  T  W  W  V  M  H  C  R  L  L  K  R  *  I  H  L  S  R  L  L  T  K  K  P  F  *  V  L  I  L  K  N  G  L  P  L  W  E  M  R  W  S  P  Y  T  R  I  R  H  G  I  W  S  Y  S  L  R  G  E  R  L  L  L  A  N  G  F  S  R  R  R  K  G  Y  H  Q  Q  K  E  S  S  I  K  P  G  L  L  P  E  V  S  T  K  E  R  E  W  T  T  M  R  S  S  H  Q  W  S  D  I  L  P  S  E  C  Y  *  R  *  L  H  I  R  I  W  S  L  N  N  L  M  *  R  Q  R  F  Y  M  E  S  W  R  K  R  Y  T  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0068C01.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56971" stop="57618"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>648</number_coding_nucleotides>
                  <number_encoded_amino_acids>216</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSETGSLDKQVEFQVIQNESDLKEPEEEDQEPKTETDIPESMPSDIHQSIAQDRPRRVGVRPPTRYGFEDMVGYALQVAEEVDTSEPSTYKEAILSSDSEKWFAAMGDEMESLHKNQTWDLVIQPSGRKIITCKWVFKKKEGISPAEGVKYKARVVARGFNQREGVDYNEIFSPVVRHTSIRVLLAIVAHQNLELEQLDVKTAFLHGELEEEIYMT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="57629" PGL_stop="58436"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="57629" e_stop="58436"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="57629" e_stop="58436" e_length="808"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57629" stop="58436"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343338" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTATATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGAAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAGGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGACTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</gDNA_template>
            <first_frame> V  S  K  F  Q  G  R  K  I  T  S  A  S  *  R  S  P  Y  M  D  L  S  S  L  Q  G  S  G  I  K  G  L  T  A  I  W  *  S  W  A  I  L  G  A  H  M  I  V  V  S  T  T  I  G  S  M  M  I  H  S  S  I  W  C  F  M  *  M  I  C  *  *  L  Q  R  R  S  M  T  F  R  S  *  R  V  Y  L  V  L  S  L  R  *  R  I  W  E  P  L  G  R  F  *  G  W  R  S  L  E  T  E  R  E  G  N  F  S  C  H  R  E  A  I  F  R  R  S  W  R  G  L  A  C  L  H  L  S  P  L  I  P  P  V  L  P  I  S  I  S  L  P  C  S  L  H  S  Q  K  K  R  R  S  I  C  H  E  S  L  M  P  V  P  *  E  V  *  C  M  L  W  S  V  Q  G  Q  I  *  H  M  Q  S  V  *  *  A  D  S  W  D  N  Q  G  E  N  I  G  R  L  *  R  E  F  S  G  T  L  E  V  H  L  T  L  V  S  F  M  E  V  I  L  S  A  W  L  L  A  I  L  I  Q  T  M  L  E  M  L  T  Q  E  D  R  *  L  A  M  C  L  P  L  E  D  L  S  S  V  G  R  Q  L  </first_frame>
            <second_frame>  F  P  S  S  R  E  G  K  S  R  L  Q  V  E  E  V  L  I  W  T  *  A  V  S  K  A  V  V  *  K  V  *  Q  L  Y  G  E  V  G  L  Y  S  E  L  I  *  L  L  C  L  L  Q  *  A  Q  *  *  F  I  H  L  S  G  A  L  C  R  *  Y  V  D  S  C  K  E  E  V  *  H  S  E  A  E  G  F  T  *  C  *  V  *  D  E  G  S  G  S  R  S  E  D  F  R  D  G  D  H  *  R  Q  R  E  K  E  T  F  L  V  T  E  K  L  Y  S  E  G  L  G  E  V  W  H  V  F  I  *  A  H  *  Y  P  Q  C  C  Q  Y  P  S  H  C  H  V  R  S  T  V  R  R  R  E  E  V  Y  V  T  S  P  L  C  Q  C  R  R  K  F  D  V  C  Y  G  L  Y  K  A  R  F  S  T  C  S  Q  C  S  E  Q  T  H  G  T  T  R  E  R  T  L  A  G  C  E  E  N  F  P  V  P  *  R  Y  I  *  R  W  S  H  L  W  R  *  Y  S  V  L  G  Y  W  L  F  *  F  R  L  C  W  R  C  *  H  K  K  I  D  D  W  L  C  V  Y  P  W  R  I  C  R  Q  L  E  G  N  F </second_frame>
            <third_frame>   F  Q  V  P  G  K  E  N  H  V  C  K  L  K  K  S  L  Y  G  L  K  Q  S  P  R  Q  W  Y  K  R  F  D  S  Y  M  V  K  L  G  Y  T  R  S  S  Y  D  C  C  V  Y  Y  N  R  L  N  D  D  S  F  I  Y  L  V  L  Y  V  D  D  M  L  I  A  A  K  K  K  Y  D  I  Q  K  L  K  G  L  L  S  A  E  F  E  M  K  D  L  G  A  A  R  K  I  L  G  M  E  I  I  R  D  R  E  R  R  K  L  F  L  S  Q  R  S  Y  I  Q  K  V  L  A  R  F  G  M  S  S  S  K  P  I  D  T  P  S  A  A  N  I  H  L  T  A  M  F  A  P  Q  S  E  E  E  K  K  Y  M  S  R  V  P  Y  A  S  A  V  G  S  L  M  Y  A  M  V  C  T  R  P  D  L  A  H  A  V  S  V  V  S  R  L  M  G  Q  P  G  R  E  H  W  Q  A  V  K  R  I  F  R  Y  L  R  G  T  S  D  V  G  L  I  Y  G  G  D  T  Q  C  L  V  T  G  Y  S  D  S  D  Y  A  G  D  V  D  T  R  R  S  M  T  G  Y  V  F  T  L  G  G  S  V  V  S  W  K  A  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0068C01.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57631" stop="58434"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>804</number_coding_nucleotides>
                  <number_encoded_amino_acids>268</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQVPGKENHVCKLKKSLYGLKQSPRQWYKRFDSYMVKLGYTRSSYDCCVYYNRLNDDSFIYLVLYVDDMLIAAKKKYDIQKLKGLLSAEFEMKDLGAARKILGMEIIRDRERRKLFLSQRSYIQKVLARFGMSSSKPIDTPSAANIHLTAMFAPQSEEEKKYMSRVPYASAVGSLMYAMVCTRPDLAHAVSVVSRLMGQPGREHWQAVKRIFRYLRGTSDVGLIYGGDTQCLVTGYSDSDYAGDVDTRRSMTGYVFTLGGSVVSWKAT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="63111" PGL_stop="69160"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="63111" e_stop="63392"/>
            <exon e_start="64408" e_stop="64899"/>
            <exon e_start="65899" e_stop="66070"/>
            <exon e_start="67076" e_stop="67374"/>
            <exon e_start="67694" e_stop="67766"/>
            <exon e_start="67837" e_stop="67927"/>
            <exon e_start="68074" e_stop="68153"/>
            <exon e_start="68567" e_stop="69160"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="0.849" e_score="0.990"/>
          <exon-intron don_prob="0.998" acc_prob="0.363" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.631" acc_prob="0.970" e_score="0.986"/>
          <exon-intron don_prob="0.963" acc_prob="0.764" e_score="0.978"/>
          <exon-intron don_prob="0.969" acc_prob="0.849" e_score="1.000"/>
          <exon-only e_score="0.929"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="63111" e_stop="63392" e_length="282"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="0.989">
            <gDNA_intron_boundary i_start="63393" i_stop="64407" i_length="1015"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="64408" e_stop="64899" e_length="492"/>
          </exon>
          <intron i_serial="2" don_prob="0.962" acc_prob="0.849">
            <gDNA_intron_boundary i_start="64900" i_stop="65898" i_length="999"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="65899" e_stop="66070" e_length="172"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.363">
            <gDNA_intron_boundary i_start="66071" i_stop="67075" i_length="1005"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="67076" e_stop="67374" e_length="299"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="67375" i_stop="67693" i_length="319"/>
          </intron>
          <exon e_serial="5" e_score="0.986">
            <gDNA_exon_boundary e_start="67694" e_stop="67766" e_length="73"/>
          </exon>
          <intron i_serial="5" don_prob="0.631" acc_prob="0.970">
            <gDNA_intron_boundary i_start="67767" i_stop="67836" i_length="70"/>
          </intron>
          <exon e_serial="6" e_score="0.978">
            <gDNA_exon_boundary e_start="67837" e_stop="67927" e_length="91"/>
          </exon>
          <intron i_serial="6" don_prob="0.963" acc_prob="0.764">
            <gDNA_intron_boundary i_start="67928" i_stop="68073" i_length="146"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="68074" e_stop="68153" e_length="80"/>
          </exon>
          <intron i_serial="7" don_prob="0.969" acc_prob="0.849">
            <gDNA_intron_boundary i_start="68154" i_stop="68566" i_length="413"/>
          </intron>
          <exon e_serial="8" e_score="0.929">
            <gDNA_exon_boundary e_start="68567" e_stop="69160" e_length="594"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63111" stop="63392"/>
              <exon start="64408" stop="64570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300807" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63117" stop="63392"/>
              <exon start="64408" stop="64644"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324724" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63118" stop="63392"/>
              <exon start="64408" stop="64689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335750" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63118" stop="63387"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335605" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63125" stop="63392"/>
              <exon start="64408" stop="64899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332475" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63140" stop="63392"/>
              <exon start="64408" stop="64777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315864" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63167" stop="63392"/>
              <exon start="64408" stop="64621"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335656" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63191" stop="63392"/>
              <exon start="64408" stop="64829"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307788" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63303" stop="63392"/>
              <exon start="64408" stop="64629"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273979" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64796" stop="64899"/>
              <exon start="65899" stop="66070"/>
              <exon start="67076" stop="67374"/>
              <exon start="67694" stop="67766"/>
              <exon start="67837" stop="67926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261988" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67727" stop="67766"/>
              <exon start="67837" stop="67927"/>
              <exon start="68074" stop="68153"/>
              <exon start="68567" stop="69160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545855" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGTACATCACTACTACTATATTGTTTGTTACACCACATTACTTTCTTGTCTCTGTTTTTTTCTCTCAAAGCTTGTAACTTTTGTTCATGGGTATTTTTCTTTACTTTCAGTGATTCAATACCCAATATTTTCTTTAGGGTTTTAGTTTCTTTTTCTATAAACCCATTGTTTCAATTAAAATGGAGACTAGTGACCAGAGGTCTTTAGCTGAAGAGGATGGAAAAAACTGTACAAACAATCTTAATTCCAGAGTTGATCCTCCTCCTCTTCTTGTTGAAAAG : GTTGGTGAATCAAGTGAAATTGTAGAGGAACTACAACTCTGCGAACTGCAGACGAAACAACTACCTCTGGAAGTACCTGAAAGAACCATTGATGGACAAACAGAAGATTTTGTTAGGATAGACATGTCCACATCACCAGTTCAAACTCCCAAGAGAGTGATTTTCTCGCCATCGCCCAGTCCTAACCATGTCAGACTAAACGAATCTCCTAGTCCCTCATTACCGTGGGCAAAATCATCCATTAAATCTCTCCTCCCTAAAATAAGTTTCAAATTACGAAATAAGACGAGTGATATTGAAAAAGCTGCAATGTTAGCTCTTGGAGTCTCTCCTTTGCCTCAGGACAAACCTTCAATTTTGAGGACTCTATCCATTAAAAGAATTTTCAATTCAAAGATGAACAGAACTTCATCATTGCCTATAACTCCAATTGAACACTCTAATCCAGAATCAACGCATGGTGACTACAGAGATGCTACATTTTATTCAGTT : AAAGCAGGAGTGCATCCCATACTTCGCTCACATTCAGTGCCAACACTGATCAAAGATGAAAGCCTAAAACAGATGGATTGCGTAGGGAATGTCTATCGTGTAGTCCCCTCAACTCCTCTCGTGCCAAGACATGATGATACATCATCAAATGCAACTCAAACTATTGGCGCAG : TGTTATGGTTCAGTTGAAAATGCTAATTTTGGTGGAGACATCACTCAAGAAGAGGCTGTCTGCAGAATCTGCTTCATCGAACTTGGGGAGGATTCGGAAACTTTGAAGATGGAGTGTAGCTGTAAAGGCGAACTAGCCTTAGCTCATCAATCATGTGCTGTAAAATGGTTTAGCATAAAAGGCAACAAGATTTGTGATGTCTGTAATGAAGAGGTTCGGAACTTACCTGTCACTCTTTTGCGGATTCAAAGTACTATTCGTAGAGGAAATGGATCCCCAGCTGACTCTGTCCGATACAG : GGTTTGGCAGGACGTTCCTGTTCTTGTCCTTGTCAGCATGCTTGCCTACTTTTGTTTTCTGGAGCAGCTTTTG : GTTACCAGAATGGGATCCGGCGCGATCGCTATATCTCTGCCCTTTTCATGCATCTTGGGTCTCCTTGCATCCATGACAGCAACAACTATGG : TGCAAAGGCGATATGCTTGGGTTTATGCTGTCAGTCAGTTTGCCTTGGTGGTTCTGTTTGCTCATGTGTTCTACTCACTG : CTTCGAGTGCAGGCAGTTCTAGCTGTTCTTCTTGCCACCTTTGCGGGTTTTGGAGGTGTAATGTGTGGGACTTCTTTTCTTCTTGAGCTTCTGAAATGGAGGAGTAGATGGAATTATTGGTCAAATGAGCCACATGATTCTCAAGAAGGGGCACAGCCAAATCAATCATCAGAAGTTACTCCTATGCCTCAGGTAGAAAGTCAAACTCGTCGAGCTGAAGCTGGTACTTCTGGAGTTGTCAATGGAAGTTGATACAGGACAAACATAATCTCTTTATATCAAGAAACCAAAGGAAAACACTAGTTTCTGTCTCTTGTAAGCAAAATTATTGTAGTGTATAGCTAGTCCTTGCAAGTCACAACTGTACAGTTTTGAGTTTATATCAAAGCTCTCGTTCAAACTTCAGAATTCTAAACATGAACACGAGACTTGAAATGAATTCAACTGTAGGTTGTAGGTTCAGGAATGGCGTTGCACGCAAAAGACGAGTGGTTCATTTTTCCAGTAGATGGGCAGTGCATGAAAGGAAACTGAAATAATGTAAATACCATAACGTTACAAGGATCTCTTCTCCTGTTATCAAAAAATCAGATC</gDNA_template>
            <first_frame> Q  Y  I  T  T  T  I  L  F  V  T  P  H  Y  F  L  V  S  V  F  F  S  Q  S  L  *  L  L  F  M  G  I  F  L  Y  F  Q  *  F  N  T  Q  Y  F  L  *  G  F  S  F  F  F  Y  K  P  I  V  S  I  K  M  E  T  S  D  Q  R  S  L  A  E  E  D  G  K  N  C  T  N  N  L  N  S  R  V  D  P  P  P  L  L  V  E  K  :  V  G  E  S  S  E  I  V  E  E  L  Q  L  C  E  L  Q  T  K  Q  L  P  L  E  V  P  E  R  T  I  D  G  Q  T  E  D  F  V  R  I  D  M  S  T  S  P  V  Q  T  P  K  R  V  I  F  S  P  S  P  S  P  N  H  V  R  L  N  E  S  P  S  P  S  L  P  W  A  K  S  S  I  K  S  L  L  P  K  I  S  F  K  L  R  N  K  T  S  D  I  E  K  A  A  M  L  A  L  G  V  S  P  L  P  Q  D  K  P  S  I  L  R  T  L  S  I  K  R  I  F  N  S  K  M  N  R  T  S  S  L  P  I  T  P  I  E  H  S  N  P  E  S  T  H  G  D  Y  R  D  A  T  F  Y  S  V  :  K  A  G  V  H  P  I  L  R  S  H  S  V  P  T  L  I  K  D  E  S  L  K  Q  M  D  C  V  G  N  V  Y  R  V  V  P  S  T  P  L  V  P  R  H  D  D  T  S  S  N  A  T  Q  T  I  G  A   : V  L  W  F  S  *  K  C  *  F  W  W  R  H  H  S  R  R  G  C  L  Q  N  L  L  H  R  T  W  G  G  F  G  N  F  E  D  G  V  *  L  *  R  R  T  S  L  S  S  S  I  M  C  C  K  M  V  *  H  K  R  Q  Q  D  L  *  C  L  *  *  R  G  S  E  L  T  C  H  S  F  A  D  S  K  Y  Y  S  *  R  K  W  I  P  S  *  L  C  P  I  Q  :  G  L  A  G  R  S  C  S  C  P  C  Q  H  A  C  L  L  L  F  S  G  A  A  F   : G  Y  Q  N  G  I  R  R  D  R  Y  I  S  A  L  F  M  H  L  G  S  P  C  I  H  D  S  N  N  Y  G :   A  K  A  I  C  L  G  L  C  C  Q  S  V  C  L  G  G  S  V  C  S  C  V  L  L  T   : A  S  S  A  G  S  S  S  C  S  S  C  H  L  C  G  F  W  R  C  N  V  W  D  F  F  S  S  *  A  S  E  M  E  E  *  M  E  L  L  V  K  *  A  T  *  F  S  R  R  G  T  A  K  S  I  I  R  S  Y  S  Y  A  S  G  R  K  S  N  S  S  S  *  S  W  Y  F  W  S  C  Q  W  K  L  I  Q  D  K  H  N  L  F  I  S  R  N  Q  R  K  T  L  V  S  V  S  C  K  Q  N  Y  C  S  V  *  L  V  L  A  S  H  N  C  T  V  L  S  L  Y  Q  S  S  R  S  N  F  R  I  L  N  M  N  T  R  L  E  M  N  S  T  V  G  C  R  F  R  N  G  V  A  R  K  R  R  V  V  H  F  S  S  R  W  A  V  H  E  R  K  L  K  *  C  K  Y  H  N  V  T  R  I  S  S  P  V  I  K  K  S  D  </first_frame>
            <second_frame>  S  T  S  L  L  L  Y  C  L  L  H  H  I  T  F  L  S  L  F  F  S  L  K  A  C  N  F  C  S  W  V  F  F  F  T  F  S  D  S  I  P  N  I  F  F  R  V  L  V  S  F  S  I  N  P  L  F  Q  L  K  W  R  L  V  T  R  G  L  *  L  K  R  M  E  K  T  V  Q  T  I  L  I  P  E  L  I  L  L  L  F  L  L  K  R :   L  V  N  Q  V  K  L  *  R  N  Y  N  S  A  N  C  R  R  N  N  Y  L  W  K  Y  L  K  E  P  L  M  D  K  Q  K  I  L  L  G  *  T  C  P  H  H  Q  F  K  L  P  R  E  *  F  S  R  H  R  P  V  L  T  M  S  D  *  T  N  L  L  V  P  H  Y  R  G  Q  N  H  P  L  N  L  S  S  L  K  *  V  S  N  Y  E  I  R  R  V  I  L  K  K  L  Q  C  *  L  L  E  S  L  L  C  L  R  T  N  L  Q  F  *  G  L  Y  P  L  K  E  F  S  I  Q  R  *  T  E  L  H  H  C  L  *  L  Q  L  N  T  L  I  Q  N  Q  R  M  V  T  T  E  M  L  H  F  I  Q  L :   K  Q  E  C  I  P  Y  F  A  H  I  Q  C  Q  H  *  S  K  M  K  A  *  N  R  W  I  A  *  G  M  S  I  V  *  S  P  Q  L  L  S  C  Q  D  M  M  I  H  H  Q  M  Q  L  K  L  L  A  Q  :  C  Y  G  S  V  E  N  A  N  F  G  G  D  I  T  Q  E  E  A  V  C  R  I  C  F  I  E  L  G  E  D  S  E  T  L  K  M  E  C  S  C  K  G  E  L  A  L  A  H  Q  S  C  A  V  K  W  F  S  I  K  G  N  K  I  C  D  V  C  N  E  E  V  R  N  L  P  V  T  L  L  R  I  Q  S  T  I  R  R  G  N  G  S  P  A  D  S  V  R  Y  R :   V  W  Q  D  V  P  V  L  V  L  V  S  M  L  A  Y  F  C  F  L  E  Q  L  L  :  V  T  R  M  G  S  G  A  I  A  I  S  L  P  F  S  C  I  L  G  L  L  A  S  M  T  A  T  T  M   : V  Q  R  R  Y  A  W  V  Y  A  V  S  Q  F  A  L  V  V  L  F  A  H  V  F  Y  S  L  :  L  R  V  Q  A  V  L  A  V  L  L  A  T  F  A  G  F  G  G  V  M  C  G  T  S  F  L  L  E  L  L  K  W  R  S  R  W  N  Y  W  S  N  E  P  H  D  S  Q  E  G  A  Q  P  N  Q  S  S  E  V  T  P  M  P  Q  V  E  S  Q  T  R  R  A  E  A  G  T  S  G  V  V  N  G  S  *  Y  R  T  N  I  I  S  L  Y  Q  E  T  K  G  K  H  *  F  L  S  L  V  S  K  I  I  V  V  Y  S  *  S  L  Q  V  T  T  V  Q  F  *  V  Y  I  K  A  L  V  Q  T  S  E  F  *  T  *  T  R  D  L  K  *  I  Q  L  *  V  V  G  S  G  M  A  L  H  A  K  D  E  W  F  I  F  P  V  D  G  Q  C  M  K  G  N  *  N  N  V  N  T  I  T  L  Q  G  S  L  L  L  L  S  K  N  Q  I </second_frame>
            <third_frame>   V  H  H  Y  Y  Y  I  V  C  Y  T  T  L  L  S  C  L  C  F  F  L  S  K  L  V  T  F  V  H  G  Y  F  S  L  L  S  V  I  Q  Y  P  I  F  S  L  G  F  *  F  L  F  L  *  T  H  C  F  N  *  N  G  D  *  *  P  E  V  F  S  *  R  G  W  K  K  L  Y  K  Q  S  *  F  Q  S  *  S  S  S  S  S  C  *  K   : G  W  *  I  K  *  N  C  R  G  T  T  T  L  R  T  A  D  E  T  T  T  S  G  S  T  *  K  N  H  *  W  T  N  R  R  F  C  *  D  R  H  V  H  I  T  S  S  N  S  Q  E  S  D  F  L  A  I  A  Q  S  *  P  C  Q  T  K  R  I  S  *  S  L  I  T  V  G  K  I  I  H  *  I  S  P  P  *  N  K  F  Q  I  T  K  *  D  E  *  Y  *  K  S  C  N  V  S  S  W  S  L  S  F  A  S  G  Q  T  F  N  F  E  D  S  I  H  *  K  N  F  Q  F  K  D  E  Q  N  F  I  I  A  Y  N  S  N  *  T  L  *  S  R  I  N  A  W  *  L  Q  R  C  Y  I  L  F  S   : *  S  R  S  A  S  H  T  S  L  T  F  S  A  N  T  D  Q  R  *  K  P  K  T  D  G  L  R  R  E  C  L  S  C  S  P  L  N  S  S  R  A  K  T  *  *  Y  I  I  K  C  N  S  N  Y  W  R  S :   V  M  V  Q  L  K  M  L  I  L  V  E  T  S  L  K  K  R  L  S  A  E  S  A  S  S  N  L  G  R  I  R  K  L  *  R  W  S  V  A  V  K  A  N  *  P  *  L  I  N  H  V  L  *  N  G  L  A  *  K  A  T  R  F  V  M  S  V  M  K  R  F  G  T  Y  L  S  L  F  C  G  F  K  V  L  F  V  E  E  M  D  P  Q  L  T  L  S  D  T   : G  F  G  R  T  F  L  F  L  S  L  S  A  C  L  P  T  F  V  F  W  S  S  F  W :   L  P  E  W  D  P  A  R  S  L  Y  L  C  P  F  H  A  S  W  V  S  L  H  P  *  Q  Q  Q  L  W  :  C  K  G  D  M  L  G  F  M  L  S  V  S  L  P  W  W  F  C  L  L  M  C  S  T  H  C :   F  E  C  R  Q  F  *  L  F  F  L  P  P  L  R  V  L  E  V  *  C  V  G  L  L  F  F  L  S  F  *  N  G  G  V  D  G  I  I  G  Q  M  S  H  M  I  L  K  K  G  H  S  Q  I  N  H  Q  K  L  L  L  C  L  R  *  K  V  K  L  V  E  L  K  L  V  L  L  E  L  S  M  E  V  D  T  G  Q  T  *  S  L  Y  I  K  K  P  K  E  N  T  S  F  C  L  L  *  A  K  L  L  *  C  I  A  S  P  C  K  S  Q  L  Y  S  F  E  F  I  S  K  L  S  F  K  L  Q  N  S  K  H  E  H  E  T  *  N  E  F  N  C  R  L  *  V  Q  E  W  R  C  T  Q  K  T  S  G  S  F  F  Q  *  M  G  S  A  *  K  E  T  E  I  M  *  I  P  *  R  Y  K  D  L  F  S  C  Y  Q  K  I  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0068C01.2" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66002" stop="66070"/>
                    <exon start="67076" stop="67374"/>
                    <exon start="67694" stop="67766"/>
                    <exon start="67837" stop="67927"/>
                    <exon start="68074" stop="68153"/>
                    <exon start="68567" stop="68818"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>861</number_coding_nucleotides>
                  <number_encoded_amino_acids>287</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SPQLLSCQDMMIHHQMQLKLLAQCYGSVENANFGGDITQEEAVCRICFIELGEDSETLKMECSCKGELALAHQSCAVKWFSIKGNKICDVCNEEVRNLPVTLLRIQSTIRRGNGSPADSVRYRVWQDVPVLVLVSMLAYFCFLEQLLVTRMGSGAIAISLPFSCILGLLASMTATTMVQRRYAWVYAVSQFALVVLFAHVFYSLLRVQAVLAVLLATFAGFGGVMCGTSFLLELLKWRSRWNYWSNEPHDSQEGAQPNQSSEVTPMPQVESQTRRAEAGTSGVVNGS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0068C01.2" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63249" stop="63392"/>
                    <exon start="64408" stop="64899"/>
                    <exon start="65899" stop="66070"/>
                    <exon start="67076" stop="67092"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>822</number_coding_nucleotides>
                  <number_encoded_amino_acids>274</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFSFFFYKPIVSIKMETSDQRSLAEEDGKNCTNNLNSRVDPPPLLVEKVGESSEIVEELQLCELQTKQLPLEVPERTIDGQTEDFVRIDMSTSPVQTPKRVIFSPSPSPNHVRLNESPSPSLPWAKSSIKSLLPKISFKLRNKTSDIEKAAMLALGVSPLPQDKPSILRTLSIKRIFNSKMNRTSSLPITPIEHSNPESTHGDYRDATFYSVKAGVHPILRSHSVPTLIKDESLKQMDCVGNVYRVVPSTPLVPRHDDTSSNATQTIGAVLWFS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0068C01.2" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68908" stop="69105"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVLASHNCTVLSLYQSSRSNFRILNMNTRLEMNSTVGCRFRNGVARKRRVVHFSSRWAVHERKLK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="63111" e_stop="63392"/>
            <exon e_start="64408" e_stop="64899"/>
            <exon e_start="65899" e_stop="66070"/>
            <exon e_start="67089" e_stop="67234"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="0.849" e_score="0.990"/>
          <exon-intron don_prob="0.998" acc_prob="0.835" e_score="1.000"/>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="63111" e_stop="63392" e_length="282"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="0.989">
            <gDNA_intron_boundary i_start="63393" i_stop="64407" i_length="1015"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="64408" e_stop="64899" e_length="492"/>
          </exon>
          <intron i_serial="2" don_prob="0.962" acc_prob="0.849">
            <gDNA_intron_boundary i_start="64900" i_stop="65898" i_length="999"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="65899" e_stop="66070" e_length="172"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.835">
            <gDNA_intron_boundary i_start="66071" i_stop="67088" i_length="1018"/>
          </intron>
          <exon e_serial="4" e_score="0.979">
            <gDNA_exon_boundary e_start="67089" e_stop="67234" e_length="146"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63111" stop="63392"/>
              <exon start="64408" stop="64570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300807" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63117" stop="63392"/>
              <exon start="64408" stop="64644"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324724" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63118" stop="63392"/>
              <exon start="64408" stop="64689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335750" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63118" stop="63387"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335605" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63125" stop="63392"/>
              <exon start="64408" stop="64899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332475" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63140" stop="63392"/>
              <exon start="64408" stop="64777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315864" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63167" stop="63392"/>
              <exon start="64408" stop="64621"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335656" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63191" stop="63392"/>
              <exon start="64408" stop="64829"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307788" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63303" stop="63392"/>
              <exon start="64408" stop="64629"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273979" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64448" stop="64899"/>
              <exon start="65899" stop="66070"/>
              <exon start="67089" stop="67234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545856" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGTACATCACTACTACTATATTGTTTGTTACACCACATTACTTTCTTGTCTCTGTTTTTTTCTCTCAAAGCTTGTAACTTTTGTTCATGGGTATTTTTCTTTACTTTCAGTGATTCAATACCCAATATTTTCTTTAGGGTTTTAGTTTCTTTTTCTATAAACCCATTGTTTCAATTAAAATGGAGACTAGTGACCAGAGGTCTTTAGCTGAAGAGGATGGAAAAAACTGTACAAACAATCTTAATTCCAGAGTTGATCCTCCTCCTCTTCTTGTTGAAAAG : GTTGGTGAATCAAGTGAAATTGTAGAGGAACTACAACTCTGCGAACTGCAGACGAAACAACTACCTCTGGAAGTACCTGAAAGAACCATTGATGGACAAACAGAAGATTTTGTTAGGATAGACATGTCCACATCACCAGTTCAAACTCCCAAGAGAGTGATTTTCTCGCCATCGCCCAGTCCTAACCATGTCAGACTAAACGAATCTCCTAGTCCCTCATTACCGTGGGCAAAATCATCCATTAAATCTCTCCTCCCTAAAATAAGTTTCAAATTACGAAATAAGACGAGTGATATTGAAAAAGCTGCAATGTTAGCTCTTGGAGTCTCTCCTTTGCCTCAGGACAAACCTTCAATTTTGAGGACTCTATCCATTAAAAGAATTTTCAATTCAAAGATGAACAGAACTTCATCATTGCCTATAACTCCAATTGAACACTCTAATCCAGAATCAACGCATGGTGACTACAGAGATGCTACATTTTATTCAGTT : AAAGCAGGAGTGCATCCCATACTTCGCTCACATTCAGTGCCAACACTGATCAAAGATGAAAGCCTAAAACAGATGGATTGCGTAGGGAATGTCTATCGTGTAGTCCCCTCAACTCCTCTCGTGCCAAGACATGATGATACATCATCAAATGCAACTCAAACTATTGGCGCAG : TTGAAAATGCTAATTTTGGTGGAGACATCACTCAAGAAGAGGCTGTCTGCAGAATCTGCTTCATCGAACTTGGGGAGGATTCGGAAACTTTGAAGATGGAGTGTAGCTGTAAAGGCGAACTAGCCTTAGCTCATCAATCATGTGCT</gDNA_template>
            <first_frame> Q  Y  I  T  T  T  I  L  F  V  T  P  H  Y  F  L  V  S  V  F  F  S  Q  S  L  *  L  L  F  M  G  I  F  L  Y  F  Q  *  F  N  T  Q  Y  F  L  *  G  F  S  F  F  F  Y  K  P  I  V  S  I  K  M  E  T  S  D  Q  R  S  L  A  E  E  D  G  K  N  C  T  N  N  L  N  S  R  V  D  P  P  P  L  L  V  E  K  :  V  G  E  S  S  E  I  V  E  E  L  Q  L  C  E  L  Q  T  K  Q  L  P  L  E  V  P  E  R  T  I  D  G  Q  T  E  D  F  V  R  I  D  M  S  T  S  P  V  Q  T  P  K  R  V  I  F  S  P  S  P  S  P  N  H  V  R  L  N  E  S  P  S  P  S  L  P  W  A  K  S  S  I  K  S  L  L  P  K  I  S  F  K  L  R  N  K  T  S  D  I  E  K  A  A  M  L  A  L  G  V  S  P  L  P  Q  D  K  P  S  I  L  R  T  L  S  I  K  R  I  F  N  S  K  M  N  R  T  S  S  L  P  I  T  P  I  E  H  S  N  P  E  S  T  H  G  D  Y  R  D  A  T  F  Y  S  V  :  K  A  G  V  H  P  I  L  R  S  H  S  V  P  T  L  I  K  D  E  S  L  K  Q  M  D  C  V  G  N  V  Y  R  V  V  P  S  T  P  L  V  P  R  H  D  D  T  S  S  N  A  T  Q  T  I  G  A   : V  E  N  A  N  F  G  G  D  I  T  Q  E  E  A  V  C  R  I  C  F  I  E  L  G  E  D  S  E  T  L  K  M  E  C  S  C  K  G  E  L  A  L  A  H  Q  S  C  A </first_frame>
            <second_frame>  S  T  S  L  L  L  Y  C  L  L  H  H  I  T  F  L  S  L  F  F  S  L  K  A  C  N  F  C  S  W  V  F  F  F  T  F  S  D  S  I  P  N  I  F  F  R  V  L  V  S  F  S  I  N  P  L  F  Q  L  K  W  R  L  V  T  R  G  L  *  L  K  R  M  E  K  T  V  Q  T  I  L  I  P  E  L  I  L  L  L  F  L  L  K  R :   L  V  N  Q  V  K  L  *  R  N  Y  N  S  A  N  C  R  R  N  N  Y  L  W  K  Y  L  K  E  P  L  M  D  K  Q  K  I  L  L  G  *  T  C  P  H  H  Q  F  K  L  P  R  E  *  F  S  R  H  R  P  V  L  T  M  S  D  *  T  N  L  L  V  P  H  Y  R  G  Q  N  H  P  L  N  L  S  S  L  K  *  V  S  N  Y  E  I  R  R  V  I  L  K  K  L  Q  C  *  L  L  E  S  L  L  C  L  R  T  N  L  Q  F  *  G  L  Y  P  L  K  E  F  S  I  Q  R  *  T  E  L  H  H  C  L  *  L  Q  L  N  T  L  I  Q  N  Q  R  M  V  T  T  E  M  L  H  F  I  Q  L :   K  Q  E  C  I  P  Y  F  A  H  I  Q  C  Q  H  *  S  K  M  K  A  *  N  R  W  I  A  *  G  M  S  I  V  *  S  P  Q  L  L  S  C  Q  D  M  M  I  H  H  Q  M  Q  L  K  L  L  A  Q  :  L  K  M  L  I  L  V  E  T  S  L  K  K  R  L  S  A  E  S  A  S  S  N  L  G  R  I  R  K  L  *  R  W  S  V  A  V  K  A  N  *  P  *  L  I  N  H  V   </second_frame>
            <third_frame>   V  H  H  Y  Y  Y  I  V  C  Y  T  T  L  L  S  C  L  C  F  F  L  S  K  L  V  T  F  V  H  G  Y  F  S  L  L  S  V  I  Q  Y  P  I  F  S  L  G  F  *  F  L  F  L  *  T  H  C  F  N  *  N  G  D  *  *  P  E  V  F  S  *  R  G  W  K  K  L  Y  K  Q  S  *  F  Q  S  *  S  S  S  S  S  C  *  K   : G  W  *  I  K  *  N  C  R  G  T  T  T  L  R  T  A  D  E  T  T  T  S  G  S  T  *  K  N  H  *  W  T  N  R  R  F  C  *  D  R  H  V  H  I  T  S  S  N  S  Q  E  S  D  F  L  A  I  A  Q  S  *  P  C  Q  T  K  R  I  S  *  S  L  I  T  V  G  K  I  I  H  *  I  S  P  P  *  N  K  F  Q  I  T  K  *  D  E  *  Y  *  K  S  C  N  V  S  S  W  S  L  S  F  A  S  G  Q  T  F  N  F  E  D  S  I  H  *  K  N  F  Q  F  K  D  E  Q  N  F  I  I  A  Y  N  S  N  *  T  L  *  S  R  I  N  A  W  *  L  Q  R  C  Y  I  L  F  S   : *  S  R  S  A  S  H  T  S  L  T  F  S  A  N  T  D  Q  R  *  K  P  K  T  D  G  L  R  R  E  C  L  S  C  S  P  L  N  S  S  R  A  K  T  *  *  Y  I  I  K  C  N  S  N  Y  W  R  S :   *  K  C  *  F  W  W  R  H  H  S  R  R  G  C  L  Q  N  L  L  H  R  T  W  G  G  F  G  N  F  E  D  G  V  *  L  *  R  R  T  S  L  S  S  S  I  M  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0068C01.2" strand="+"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63249" stop="63392"/>
                    <exon start="64408" stop="64899"/>
                    <exon start="65899" stop="66070"/>
                    <exon start="67089" stop="67234"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>954</number_coding_nucleotides>
                  <number_encoded_amino_acids>318</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFSFFFYKPIVSIKMETSDQRSLAEEDGKNCTNNLNSRVDPPPLLVEKVGESSEIVEELQLCELQTKQLPLEVPERTIDGQTEDFVRIDMSTSPVQTPKRVIFSPSPSPNHVRLNESPSPSLPWAKSSIKSLLPKISFKLRNKTSDIEKAAMLALGVSPLPQDKPSILRTLSIKRIFNSKMNRTSSLPITPIEHSNPESTHGDYRDATFYSVKAGVHPILRSHSVPTLIKDESLKQMDCVGNVYRVVPSTPLVPRHDDTSSNATQTIGAVENANFGGDITQEEAVCRICFIELGEDSETLKMECSCKGELALAHQSCA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="70445" PGL_stop="69764"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="70445" e_stop="69764"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="70445" e_stop="69764" e_length="682"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70445" stop="69764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371999" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70097" stop="69785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215477" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATTCACTCATGAATCAGTGCTTACTGTCTGCCGGGAAGGGCACATTAAGATCTGGATGAGACCAGGCTTTGGTGAAAACCAATCAAGCAACTCAGATTCTTTATTGAGTACTAGTCTAAAGGAGAAGACATCGTTATCTGGGAAGACTCTTTCTTCGAGTTACAAGCAATAACATAACAATCATACAACGGGTTGCAAAGTAGAGGATGCAGTAAGTGGGGTCCTTTTCGTACATACTACCATTGACTGCTCTTCAATTAGTTTGCTCATTTCTAATAAGCACATGATATGACGTTGCTCGATGAGATTAACTGACCAATTGTATAGCGAACAATGAAGATGCTGCTGGGAGCAAGATCAGGTTGGAAGAACAGTATGTACCTAGCGGTAAGTATGAAATGCTTAACAAGAACTTCTAAGCTGATGTGCTGAAATAATCGATATTGTCTTTTGAGATGCGAAATTTCTAGTTCCCACCCTGCTAGAACTCTCCCAGCCCCTCCCTTTTCCCCTCTTTGTTCTTTTCTTTCCTTTTTTTCTTCCTCTGTAGGCAATTTTTCCTAGTAACTACTGGTTGACATTTTTGTATTGGATTACCTCATGTTTTGCCCTGTCTAATATTTTGGCCGTGGCGTATGAGGCTGATAAAGCTTATTTAAGGCATTTTTTCATAAAAATTTT</gDNA_template>
            <first_frame> H  S  L  M  N  Q  C  L  L  S  A  G  K  G  T  L  R  S  G  *  D  Q  A  L  V  K  T  N  Q  A  T  Q  I  L  Y  *  V  L  V  *  R  R  R  H  R  Y  L  G  R  L  F  L  R  V  T  S  N  N  I  T  I  I  Q  R  V  A  K  *  R  M  Q  *  V  G  S  F  S  Y  I  L  P  L  T  A  L  Q  L  V  C  S  F  L  I  S  T  *  Y  D  V  A  R  *  D  *  L  T  N  C  I  A  N  N  E  D  A  A  G  S  K  I  R  L  E  E  Q  Y  V  P  S  G  K  Y  E  M  L  N  K  N  F  *  A  D  V  L  K  *  S  I  L  S  F  E  M  R  N  F  *  F  P  P  C  *  N  S  P  S  P  S  L  F  P  S  L  F  F  S  F  L  F  F  F  L  C  R  Q  F  F  L  V  T  T  G  *  H  F  C  I  G  L  P  H  V  L  P  C  L  I  F  W  P  W  R  M  R  L  I  K  L  I  *  G  I  F  S  *  K  F  </first_frame>
            <second_frame>  I  H  S  *  I  S  A  Y  C  L  P  G  R  A  H  *  D  L  D  E  T  R  L  W  *  K  P  I  K  Q  L  R  F  F  I  E  Y  *  S  K  G  E  D  I  V  I  W  E  D  S  F  F  E  L  Q  A  I  T  *  Q  S  Y  N  G  L  Q  S  R  G  C  S  K  W  G  P  F  R  T  Y  Y  H  *  L  L  F  N  *  F  A  H  F  *  *  A  H  D  M  T  L  L  D  E  I  N  *  P  I  V  *  R  T  M  K  M  L  L  G  A  R  S  G  W  K  N  S  M  Y  L  A  V  S  M  K  C  L  T  R  T  S  K  L  M  C  *  N  N  R  Y  C  L  L  R  C  E  I  S  S  S  H  P  A  R  T  L  P  A  P  P  F  S  P  L  C  S  F  L  S  F  F  S  S  S  V  G  N  F  S  *  *  L  L  V  D  I  F  V  L  D  Y  L  M  F  C  P  V  *  Y  F  G  R  G  V  *  G  *  *  S  L  F  K  A  F  F  H  K  N  F </second_frame>
            <third_frame>   F  T  H  E  S  V  L  T  V  C  R  E  G  H  I  K  I  W  M  R  P  G  F  G  E  N  Q  S  S  N  S  D  S  L  L  S  T  S  L  K  E  K  T  S  L  S  G  K  T  L  S  S  S  Y  K  Q  *  H  N  N  H  T  T  G  C  K  V  E  D  A  V  S  G  V  L  F  V  H  T  T  I  D  C  S  S  I  S  L  L  I  S  N  K  H  M  I  *  R  C  S  M  R  L  T  D  Q  L  Y  S  E  Q  *  R  C  C  W  E  Q  D  Q  V  G  R  T  V  C  T  *  R  *  V  *  N  A  *  Q  E  L  L  S  *  C  A  E  I  I  D  I  V  F  *  D  A  K  F  L  V  P  T  L  L  E  L  S  Q  P  L  P  F  P  L  F  V  L  F  F  P  F  F  L  P  L  *  A  I  F  P  S  N  Y  W  L  T  F  L  Y  W  I  T  S  C  F  A  L  S  N  I  L  A  V  A  Y  E  A  D  K  A  Y  L  R  H  F  F  I  K  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLe0068C01.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="78065" PGL_stop="75998"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78065" e_stop="77695"/>
            <exon e_start="76284" e_stop="75998"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.992"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="78065" e_stop="77695" e_length="371"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="77694" i_stop="76285" i_length="1410"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="76284" e_stop="75998" e_length="287"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78065" stop="77695"/>
              <exon start="76284" stop="75998"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78065" stop="77695"/>
              <exon start="76284" stop="76002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287008" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78019" stop="77695"/>
              <exon start="76284" stop="76001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329206" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAGAAGAAGAAATTGGTGAAAAAAAGTCAATATCATCCTTCACAAAACACTTGATCTAGAAGCAATTGACACCCTAGAAGATTCATAAACCGATTGTTTAAATGATCTCATAAACCCCATATGTTGAATTTTTGATAGGAACAGATTTTTTTTTTTTTTGATTTTGATTTGGTGAAGAATGATGAATTCTGGGATTAGTAGTAATTCGATGTCGTCTTCATCGGCACCGGGGAATAACAGCAGTAACAACGCACAATCACCTGGTTTGAAGACGTATTTCAAAACCCCAGAAGGAAGATACAAGCTTCAGTATGAGAAGACTCACCCTGCTGGGCTTCTTCATTATGCTCATGGAAAGACTGTAACTCAG : GTGACTCTTGCTCATCTCAAGGATAAGCCGGCACATGCGCAGCCCCAAGCATCATCAAGTTTTGGTGTGAGTAGTGGTGTTAGGTCAGCTGCAGCAAGGTTCTTAGGTGGAAACGGTAGTAAAACACTTAGTTTTGTTGGAGGAAATGGTGGAGGTAAGTCTATCAGTGGCCTGAGTGGTAGGGTTGGATCATTTGGGGTGTCAAGTTCAAGTAGTTCTGTTGGTAATTCAAATTTTGATGGCAAAGGAACCTATTTAGTGTTCAATGTTGGTGATGCAATTTTTAT</gDNA_template>
            <first_frame> E  E  E  E  I  G  E  K  K  S  I  S  S  F  T  K  H  L  I  *  K  Q  L  T  P  *  K  I  H  K  P  I  V  *  M  I  S  *  T  P  Y  V  E  F  L  I  G  T  D  F  F  F  F  *  F  *  F  G  E  E  *  *  I  L  G  L  V  V  I  R  C  R  L  H  R  H  R  G  I  T  A  V  T  T  H  N  H  L  V  *  R  R  I  S  K  P  Q  K  E  D  T  S  F  S  M  R  R  L  T  L  L  G  F  F  I  M  L  M  E  R  L  *  L  R :   *  L  L  L  I  S  R  I  S  R  H  M  R  S  P  K  H  H  Q  V  L  V  *  V  V  V  L  G  Q  L  Q  Q  G  S  *  V  E  T  V  V  K  H  L  V  L  L  E  E  M  V  E  V  S  L  S  V  A  *  V  V  G  L  D  H  L  G  C  Q  V  Q  V  V  L  L  V  I  Q  I  L  M  A  K  E  P  I  *  C  S  M  L  V  M  Q  F  L  </first_frame>
            <second_frame>  K  K  K  K  L  V  K  K  S  Q  Y  H  P  S  Q  N  T  *  S  R  S  N  *  H  P  R  R  F  I  N  R  L  F  K  *  S  H  K  P  H  M  L  N  F  *  *  E  Q  I  F  F  F  F  D  F  D  L  V  K  N  D  E  F  W  D  *  *  *  F  D  V  V  F  I  G  T  G  E  *  Q  Q  *  Q  R  T  I  T  W  F  E  D  V  F  Q  N  P  R  R  K  I  Q  A  S  V  *  E  D  S  P  C  W  A  S  S  L  C  S  W  K  D  C  N  S   : G  D  S  C  S  S  Q  G  *  A  G  T  C  A  A  P  S  I  I  K  F  W  C  E  *  W  C  *  V  S  C  S  K  V  L  R  W  K  R  *  *  N  T  *  F  C  W  R  K  W  W  R  *  V  Y  Q  W  P  E  W  *  G  W  I  I  W  G  V  K  F  K  *  F  C  W  *  F  K  F  *  W  Q  R  N  L  F  S  V  Q  C  W  *  C  N  F  Y </second_frame>
            <third_frame>   R  R  R  N  W  *  K  K  V  N  I  I  L  H  K  T  L  D  L  E  A  I  D  T  L  E  D  S  *  T  D  C  L  N  D  L  I  N  P  I  C  *  I  F  D  R  N  R  F  F  F  F  L  I  L  I  W  *  R  M  M  N  S  G  I  S  S  N  S  M  S  S  S  S  A  P  G  N  N  S  S  N  N  A  Q  S  P  G  L  K  T  Y  F  K  T  P  E  G  R  Y  K  L  Q  Y  E  K  T  H  P  A  G  L  L  H  Y  A  H  G  K  T  V  T  Q  :  V  T  L  A  H  L  K  D  K  P  A  H  A  Q  P  Q  A  S  S  S  F  G  V  S  S  G  V  R  S  A  A  A  R  F  L  G  G  N  G  S  K  T  L  S  F  V  G  G  N  G  G  G  K  S  I  S  G  L  S  G  R  V  G  S  F  G  V  S  S  S  S  S  S  V  G  N  S  N  F  D  G  K  G  T  Y  L  V  F  N  V  G  D  A  I  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0068C01.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77889" stop="77695"/>
                    <exon start="76284" stop="76000"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>480</number_coding_nucleotides>
                  <number_encoded_amino_acids>160</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RMMNSGISSNSMSSSSAPGNNSSNNAQSPGLKTYFKTPEGRYKLQYEKTHPAGLLHYAHGKTVTQVTLAHLKDKPAHAQPQASSSFGVSSGVRSAAARFLGGNGSKTLSFVGGNGGGKSISGLSGRVGSFGVSSSSSSVGNSNFDGKGTYLVFNVGDAIF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="81571" PGL_stop="80748"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="81571" e_stop="80748"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="81571" e_stop="80748" e_length="824"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81571" stop="80748"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688066" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81570" stop="80829"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334745" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAAAATGAAACACATTTTCTTGATATTGTTCTTTTTCTTGTTGAAATGCATTGGCATTTTGTCACAAGCTCCAGCTCCGGCTCCAGGTCCACCACCTCCATTAAACGTGACAAAGATACTCGAAAAAGCAGGTCAATGTTCAACGTTCATACGTCTACTACAAAACACACAACAACTCAATGAAATCACCTCACAACTCAACAATTCCAACAATGGAATCACAATGTTTGTGCCAACAGATAATGCATTTTTAAACATGAAAGCAGGCACGTTGAATTCGTTTAACGATCAACAAAAAGCTGAACTTATCCAATTCCATATCCTTCCTACATACTATTCACTCACTCAATTCCAAACTGCTAGTAACCCTTTAAGAACACAAGCTGGAGGAACAACGGATAGAGAGTTCCCGATAAATATAACAACAACTGGAAGTTCAGTTAACATTACAACAGGAATTGTGAATGCAAGTATATCAAATACAATATATACTGATAACCAATTGGCTATATATCAAGTAGACAACGTTCTTCTTCCGTTACAATTCTTTGTTCCTCCAGCACCAGCACCAGCACCAACACCTATAACGCGTAAAAGGAAAGCAGGATCCTCTGACTCTTCATCAAAACAAGATGCTTCCTCTGCTACTTCTCTGCTTCAAGAAATGTACAATGGGATGATTTTCATTTTCTTGTTTTCTACTGCATTTTTTTCGAGTTTATAAGTATGATGATCATGTTAGTATTTGTGTGTATGTATGCTTGTGATTCTTTACCTATATTTCATTGAAAATGAATTTTGAGTGTTTTCAAGAATAGATCT</gDNA_template>
            <first_frame> K  K  M  K  H  I  F  L  I  L  F  F  F  L  L  K  C  I  G  I  L  S  Q  A  P  A  P  A  P  G  P  P  P  P  L  N  V  T  K  I  L  E  K  A  G  Q  C  S  T  F  I  R  L  L  Q  N  T  Q  Q  L  N  E  I  T  S  Q  L  N  N  S  N  N  G  I  T  M  F  V  P  T  D  N  A  F  L  N  M  K  A  G  T  L  N  S  F  N  D  Q  Q  K  A  E  L  I  Q  F  H  I  L  P  T  Y  Y  S  L  T  Q  F  Q  T  A  S  N  P  L  R  T  Q  A  G  G  T  T  D  R  E  F  P  I  N  I  T  T  T  G  S  S  V  N  I  T  T  G  I  V  N  A  S  I  S  N  T  I  Y  T  D  N  Q  L  A  I  Y  Q  V  D  N  V  L  L  P  L  Q  F  F  V  P  P  A  P  A  P  A  P  T  P  I  T  R  K  R  K  A  G  S  S  D  S  S  S  K  Q  D  A  S  S  A  T  S  L  L  Q  E  M  Y  N  G  M  I  F  I  F  L  F  S  T  A  F  F  S  S  L  *  V  *  *  S  C  *  Y  L  C  V  C  M  L  V  I  L  Y  L  Y  F  I  E  N  E  F  *  V  F  S  R  I  D   </first_frame>
            <second_frame>  K  K  *  N  T  F  S  *  Y  C  S  F  S  C  *  N  A  L  A  F  C  H  K  L  Q  L  R  L  Q  V  H  H  L  H  *  T  *  Q  R  Y  S  K  K  Q  V  N  V  Q  R  S  Y  V  Y  Y  K  T  H  N  N  S  M  K  S  P  H  N  S  T  I  P  T  M  E  S  Q  C  L  C  Q  Q  I  M  H  F  *  T  *  K  Q  A  R  *  I  R  L  T  I  N  K  K  L  N  L  S  N  S  I  S  F  L  H  T  I  H  S  L  N  S  K  L  L  V  T  L  *  E  H  K  L  E  E  Q  R  I  E  S  S  R  *  I  *  Q  Q  L  E  V  Q  L  T  L  Q  Q  E  L  *  M  Q  V  Y  Q  I  Q  Y  I  L  I  T  N  W  L  Y  I  K  *  T  T  F  F  F  R  Y  N  S  L  F  L  Q  H  Q  H  Q  H  Q  H  L  *  R  V  K  G  K  Q  D  P  L  T  L  H  Q  N  K  M  L  P  L  L  L  L  C  F  K  K  C  T  M  G  *  F  S  F  S  C  F  L  L  H  F  F  R  V  Y  K  Y  D  D  H  V  S  I  C  V  Y  V  C  L  *  F  F  T  Y  I  S  L  K  M  N  F  E  C  F  Q  E  *  I  </second_frame>
            <third_frame>   K  N  E  T  H  F  L  D  I  V  L  F  L  V  E  M  H  W  H  F  V  T  S  S  S  S  G  S  R  S  T  T  S  I  K  R  D  K  D  T  R  K  S  R  S  M  F  N  V  H  T  S  T  T  K  H  T  T  T  Q  *  N  H  L  T  T  Q  Q  F  Q  Q  W  N  H  N  V  C  A  N  R  *  C  I  F  K  H  E  S  R  H  V  E  F  V  *  R  S  T  K  S  *  T  Y  P  I  P  Y  P  S  Y  I  L  F  T  H  S  I  P  N  C  *  *  P  F  K  N  T  S  W  R  N  N  G  *  R  V  P  D  K  Y  N  N  N  W  K  F  S  *  H  Y  N  R  N  C  E  C  K  Y  I  K  Y  N  I  Y  *  *  P  I  G  Y  I  S  S  R  Q  R  S  S  S  V  T  I  L  C  S  S  S  T  S  T  S  T  N  T  Y  N  A  *  K  E  S  R  I  L  *  L  F  I  K  T  R  C  F  L  C  Y  F  S  A  S  R  N  V  Q  W  D  D  F  H  F  L  V  F  Y  C  I  F  F  E  F  I  S  M  M  I  M  L  V  F  V  C  M  Y  A  C  D  S  L  P  I  F  H  *  K  *  I  L  S  V  F  K  N  R  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0068C01.2" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81571" stop="80846"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>723</number_coding_nucleotides>
                  <number_encoded_amino_acids>241</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKMKHIFLILFFFLLKCIGILSQAPAPAPGPPPPLNVTKILEKAGQCSTFIRLLQNTQQLNEITSQLNNSNNGITMFVPTDNAFLNMKAGTLNSFNDQQKAELIQFHILPTYYSLTQFQTASNPLRTQAGGTTDREFPINITTTGSSVNITTGIVNASISNTIYTDNQLAIYQVDNVLLPLQFFVPPAPAPAPTPITRKRKAGSSDSSSKQDASSATSLLQEMYNGMIFIFLFSTAFFSSL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="93486" PGL_stop="87923"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="93486" e_stop="93329"/>
            <exon e_start="92081" e_stop="91916"/>
            <exon e_start="91382" e_stop="91181"/>
            <exon e_start="91092" e_stop="90932"/>
            <exon e_start="90808" e_stop="90715"/>
            <exon e_start="90296" e_stop="90084"/>
            <exon e_start="89929" e_stop="89849"/>
            <exon e_start="89210" e_stop="88992"/>
            <exon e_start="88747" e_stop="88295"/>
            <exon e_start="87941" e_stop="87923"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.910" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.866" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.636" acc_prob="0.828" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.995"/>
          <exon-intron don_prob="1.000" acc_prob="0.905" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.978"/>
          <exon-only e_score="0.737"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="93486" e_stop="93329" e_length="158"/>
          </exon>
          <intron i_serial="1" don_prob="0.910" acc_prob="0.999">
            <gDNA_intron_boundary i_start="93328" i_stop="92082" i_length="1247"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="92081" e_stop="91916" e_length="166"/>
          </exon>
          <intron i_serial="2" don_prob="0.971" acc_prob="0.999">
            <gDNA_intron_boundary i_start="91915" i_stop="91383" i_length="533"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="91382" e_stop="91181" e_length="202"/>
          </exon>
          <intron i_serial="3" don_prob="0.982" acc_prob="0.982">
            <gDNA_intron_boundary i_start="91180" i_stop="91093" i_length="88"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="91092" e_stop="90932" e_length="161"/>
          </exon>
          <intron i_serial="4" don_prob="0.866" acc_prob="0.958">
            <gDNA_intron_boundary i_start="90931" i_stop="90809" i_length="123"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="90808" e_stop="90715" e_length="94"/>
          </exon>
          <intron i_serial="5" don_prob="0.636" acc_prob="0.828">
            <gDNA_intron_boundary i_start="90714" i_stop="90297" i_length="418"/>
          </intron>
          <exon e_serial="6" e_score="0.995">
            <gDNA_exon_boundary e_start="90296" e_stop="90084" e_length="213"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="90083" i_stop="89930" i_length="154"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="89929" e_stop="89849" e_length="81"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.905">
            <gDNA_intron_boundary i_start="89848" i_stop="89211" i_length="638"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="89210" e_stop="88992" e_length="219"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="88991" i_stop="88748" i_length="244"/>
          </intron>
          <exon e_serial="9" e_score="0.978">
            <gDNA_exon_boundary e_start="88747" e_stop="88295" e_length="453"/>
          </exon>
          <intron i_serial="9" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="88294" i_stop="87942" i_length="353"/>
          </intron>
          <exon e_serial="10" e_score="0.737">
            <gDNA_exon_boundary e_start="87941" e_stop="87923" e_length="19"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93486" stop="93329"/>
              <exon start="92081" stop="91916"/>
              <exon start="91382" stop="91181"/>
              <exon start="91092" stop="91065"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93461" stop="93329"/>
              <exon start="92081" stop="91916"/>
              <exon start="91382" stop="91181"/>
              <exon start="91092" stop="90932"/>
              <exon start="90808" stop="90715"/>
              <exon start="90296" stop="90084"/>
              <exon start="89929" stop="89849"/>
              <exon start="89210" stop="88992"/>
              <exon start="88747" stop="88538"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747520" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90237" stop="90084"/>
              <exon start="89929" stop="89849"/>
              <exon start="89210" stop="88992"/>
              <exon start="88747" stop="88423"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257234" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90223" stop="90084"/>
              <exon start="89929" stop="89849"/>
              <exon start="89210" stop="88992"/>
              <exon start="88747" stop="88709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551017" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90223" stop="90084"/>
              <exon start="89929" stop="89849"/>
              <exon start="89210" stop="88992"/>
              <exon start="88747" stop="88710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688791" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88511" stop="88295"/>
              <exon start="87941" stop="87923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225800" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTATAGGTGAATTTGCAAAGTTGAATGATGGAGCCATTGATGAAGATATGGAGCTTTGATCTTGTGGCATGGAGGGGTTTCTTGTTTTCAGCATTGATACTTAACTTTATATTCGCTTGCCAACTCTTTTTCCTTCAACCCCTTGTATCTGCTTTAG : ACGCCAAACCTGGTGATGCTGCTGCATTGTTTGAGAGAGTTGCACAAAATGTAAAAGTTAAGAAATACAGTGAGGCACTTAATGATCTAAATTCAGCCATAGAGGCAGACCCAACACTTTCAGAGGCGTATTGGCACCGTGCATCTCTCCTTCGTCAGTTGTGCAG : ATATGAGGAATCGGAAAAAAGCTACAAAAAGTTTCTGGAGATGAAACCAAGAGACTCAGCTGCAGAGAAGGAGCTTTCTCAGATGCACCAAGCTAAGAGTGCTCTTGATTCAGCTACCAACCTGTTGGACACGGATGACATTAAAAAAGCGTTGGAGTATATTGATAAAGTCGTACTAGTTTTCTCTCCAGCATGCTCCAAG : GCCAAACTCCTTAAGGTGAAGCTATTGCTAGCAGATAAAGATTATTCAGGTGTCATATCCGAGGCAGGATTTATACTTAAAGAGGATGAGGATAATCTGGAGGCTTTACTTCTACGAGGCCGTGCCTACTACTATCTGGCTGATCATGATGTATCCTTACG : GCACTACCAAAAAGGTCTTCGTTCAGACCCAGAGCACGGGGAATTGAAGAAAGCCTATTTTGGCTTGAAAAACTTACTTAAAAAAACTAAAAGC : GCAGACGATAACGTAAGTAAGGGTAAATTTCGTCTTGCTGTGGAGGAGTACAAAGCAGCCCTGGCGTTGGACCCCAACCATTCTGCACATAATGTAAATCTTCATCTTGGTTTGTGCAAAGTCTTGGTAAAGCTTGGAAGGGGGAAGGATGCTATATCAAGCTGTTCAGAAGCCCTTGAACTTGATGGAGAGCTTATCGATGCTCTAGTGCAG : AGGGGTGAAGCCAAGCTTCTAACAGAAGATTGGGAGGGAGCTGTTGCAGATTTGAAAGAAGCAGCTGAAAAATCTCCTCAG : GATAGGAATATTCGTGAAGTGCTGATGAGGGCTGAGAGATCATTAAAATTAAGTAAACGGAAGGATTGGTATAAGATATTGGGAGTGTCAAAGACATCATCTGTATCAGAGATAAAAAAGGCATACAAAAAGCTTGCGCTGCAATGGCACCCTGACAAGAACGTTGACAACAGAGAAGAAGCTGAAGAAAAGTTTCGTGAAATAGCAGCTGCATATGAG : GTTCTCGGGGATGAGGAAAAACGTACACGATATGACCAAGGGGAAGACATTGAAGACATGGGTTCAGGGATGGGTGGTGGAGGATTCAACCCATTCGGTGGAGGATTTGGTGGAGGATTTGGCGGAGGAGGGCAGCAGTACACATTCCACTTTGAAGGAGGATTTCCAGGTGGAGGCGGGGGAGGGGGATTTGGCGGATTTCATTTTTGACCTCCATGGCGTTCGTTTATACTCCTCTCATGGTTGCTGCATAGCATAAAGTACAGTAGGCTCTTCTTATACTCTGATTCCCAAGAAGTTTTTGCTTTGCAGATACCATTTTTATCTCTTTTTTAGCTTTAGCTTTAAGGAGAATCATTTGGATCAATTAAACAGATCCATTTTGTAACTTTCTAGCTGATGTAGTTACATTCTTAAATAGTGTTATTCTGAAACCAAGTGAAGTGATTCTAA : ATAACAAGGACAAAAATAA</gDNA_template>
            <first_frame> S  I  G  E  F  A  K  L  N  D  G  A  I  D  E  D  M  E  L  *  S  C  G  M  E  G  F  L  V  F  S  I  D  T  *  L  Y  I  R  L  P  T  L  F  P  S  T  P  C  I  C  F  R :   R  Q  T  W  *  C  C  C  I  V  *  E  S  C  T  K  C  K  S  *  E  I  Q  *  G  T  *  *  S  K  F  S  H  R  G  R  P  N  T  F  R  G  V  L  A  P  C  I  S  P  S  S  V  V  Q  :  I  *  G  I  G  K  K  L  Q  K  V  S  G  D  E  T  K  R  L  S  C  R  E  G  A  F  S  D  A  P  S  *  E  C  S  *  F  S  Y  Q  P  V  G  H  G  *  H  *  K  S  V  G  V  Y  *  *  S  R  T  S  F  L  S  S  M  L  Q   : G  Q  T  P  *  G  E  A  I  A  S  R  *  R  L  F  R  C  H  I  R  G  R  I  Y  T  *  R  G  *  G  *  S  G  G  F  T  S  T  R  P  C  L  L  L  S  G  *  S  *  C  I  L  T  :  A  L  P  K  R  S  S  F  R  P  R  A  R  G  I  E  E  S  L  F  W  L  E  K  L  T  *  K  N  *  K   : R  R  R  *  R  K  *  G  *  I  S  S  C  C  G  G  V  Q  S  S  P  G  V  G  P  Q  P  F  C  T  *  C  K  S  S  S  W  F  V  Q  S  L  G  K  A  W  K  G  E  G  C  Y  I  K  L  F  R  S  P  *  T  *  W  R  A  Y  R  C  S  S  A   : E  G  *  S  Q  A  S  N  R  R  L  G  G  S  C  C  R  F  E  R  S  S  *  K  I  S  S   : G  *  E  Y  S  *  S  A  D  E  G  *  E  I  I  K  I  K  *  T  E  G  L  V  *  D  I  G  S  V  K  D  I  I  C  I  R  D  K  K  G  I  Q  K  A  C  A  A  M  A  P  *  Q  E  R  *  Q  Q  R  R  S  *  R  K  V  S  *  N  S  S  C  I  *   : G  S  R  G  *  G  K  T  Y  T  I  *  P  R  G  R  H  *  R  H  G  F  R  D  G  W  W  R  I  Q  P  I  R  W  R  I  W  W  R  I  W  R  R  R  A  A  V  H  I  P  L  *  R  R  I  S  R  W  R  R  G  R  G  I  W  R  I  S  F  L  T  S  M  A  F  V  Y  T  P  L  M  V  A  A  *  H  K  V  Q  *  A  L  L  I  L  *  F  P  R  S  F  C  F  A  D  T  I  F  I  S  F  L  A  L  A  L  R  R  I  I  W  I  N  *  T  D  P  F  C  N  F  L  A  D  V  V  T  F  L  N  S  V  I  L  K  P  S  E  V  I  L   : N  N  K  D  K  N   </first_frame>
            <second_frame>  L  *  V  N  L  Q  S  *  M  M  E  P  L  M  K  I  W  S  F  D  L  V  A  W  R  G  F  L  F  S  A  L  I  L  N  F  I  F  A  C  Q  L  F  F  L  Q  P  L  V  S  A  L   : D  A  K  P  G  D  A  A  A  L  F  E  R  V  A  Q  N  V  K  V  K  K  Y  S  E  A  L  N  D  L  N  S  A  I  E  A  D  P  T  L  S  E  A  Y  W  H  R  A  S  L  L  R  Q  L  C  R :   Y  E  E  S  E  K  S  Y  K  K  F  L  E  M  K  P  R  D  S  A  A  E  K  E  L  S  Q  M  H  Q  A  K  S  A  L  D  S  A  T  N  L  L  D  T  D  D  I  K  K  A  L  E  Y  I  D  K  V  V  L  V  F  S  P  A  C  S  K  :  A  K  L  L  K  V  K  L  L  L  A  D  K  D  Y  S  G  V  I  S  E  A  G  F  I  L  K  E  D  E  D  N  L  E  A  L  L  L  R  G  R  A  Y  Y  Y  L  A  D  H  D  V  S  L  R :   H  Y  Q  K  G  L  R  S  D  P  E  H  G  E  L  K  K  A  Y  F  G  L  K  N  L  L  K  K  T  K  S  :  A  D  D  N  V  S  K  G  K  F  R  L  A  V  E  E  Y  K  A  A  L  A  L  D  P  N  H  S  A  H  N  V  N  L  H  L  G  L  C  K  V  L  V  K  L  G  R  G  K  D  A  I  S  S  C  S  E  A  L  E  L  D  G  E  L  I  D  A  L  V  Q  :  R  G  E  A  K  L  L  T  E  D  W  E  G  A  V  A  D  L  K  E  A  A  E  K  S  P  Q  :  D  R  N  I  R  E  V  L  M  R  A  E  R  S  L  K  L  S  K  R  K  D  W  Y  K  I  L  G  V  S  K  T  S  S  V  S  E  I  K  K  A  Y  K  K  L  A  L  Q  W  H  P  D  K  N  V  D  N  R  E  E  A  E  E  K  F  R  E  I  A  A  A  Y  E  :  V  L  G  D  E  E  K  R  T  R  Y  D  Q  G  E  D  I  E  D  M  G  S  G  M  G  G  G  G  F  N  P  F  G  G  G  F  G  G  G  F  G  G  G  G  Q  Q  Y  T  F  H  F  E  G  G  F  P  G  G  G  G  G  G  G  F  G  G  F  H  F  *  P  P  W  R  S  F  I  L  L  S  W  L  L  H  S  I  K  Y  S  R  L  F  L  Y  S  D  S  Q  E  V  F  A  L  Q  I  P  F  L  S  L  F  *  L  *  L  *  G  E  S  F  G  S  I  K  Q  I  H  F  V  T  F  *  L  M  *  L  H  S  *  I  V  L  F  *  N  Q  V  K  *  F  *  :  I  T  R  T  K  I  </second_frame>
            <third_frame>   Y  R  *  I  C  K  V  E  *  W  S  H  *  *  R  Y  G  A  L  I  L  W  H  G  G  V  S  C  F  Q  H  *  Y  L  T  L  Y  S  L  A  N  S  F  S  F  N  P  L  Y  L  L  *  :  T  P  N  L  V  M  L  L  H  C  L  R  E  L  H  K  M  *  K  L  R  N  T  V  R  H  L  M  I  *  I  Q  P  *  R  Q  T  Q  H  F  Q  R  R  I  G  T  V  H  L  S  F  V  S  C  A   : D  M  R  N  R  K  K  A  T  K  S  F  W  R  *  N  Q  E  T  Q  L  Q  R  R  S  F  L  R  C  T  K  L  R  V  L  L  I  Q  L  P  T  C  W  T  R  M  T  L  K  K  R  W  S  I  L  I  K  S  Y  *  F  S  L  Q  H  A  P  R :   P  N  S  L  R  *  S  Y  C  *  Q  I  K  I  I  Q  V  S  Y  P  R  Q  D  L  Y  L  K  R  M  R  I  I  W  R  L  Y  F  Y  E  A  V  P  T  T  I  W  L  I  M  M  Y  P  Y   : G  T  T  K  K  V  F  V  Q  T  Q  S  T  G  N  *  R  K  P  I  L  A  *  K  T  Y  L  K  K  L  K  A :   Q  T  I  T  *  V  R  V  N  F  V  L  L  W  R  S  T  K  Q  P  W  R  W  T  P  T  I  L  H  I  M  *  I  F  I  L  V  C  A  K  S  W  *  S  L  E  G  G  R  M  L  Y  Q  A  V  Q  K  P  L  N  L  M  E  S  L  S  M  L  *  C  R :   G  V  K  P  S  F  *  Q  K  I  G  R  E  L  L  Q  I  *  K  K  Q  L  K  N  L  L  R :   I  G  I  F  V  K  C  *  *  G  L  R  D  H  *  N  *  V  N  G  R  I  G  I  R  Y  W  E  C  Q  R  H  H  L  Y  Q  R  *  K  R  H  T  K  S  L  R  C  N  G  T  L  T  R  T  L  T  T  E  K  K  L  K  K  S  F  V  K  *  Q  L  H  M  R :   F  S  G  M  R  K  N  V  H  D  M  T  K  G  K  T  L  K  T  W  V  Q  G  W  V  V  E  D  S  T  H  S  V  E  D  L  V  E  D  L  A  E  E  G  S  S  T  H  S  T  L  K  E  D  F  Q  V  E  A  G  E  G  D  L  A  D  F  I  F  D  L  H  G  V  R  L  Y  S  S  H  G  C  C  I  A  *  S  T  V  G  S  S  Y  T  L  I  P  K  K  F  L  L  C  R  Y  H  F  Y  L  F  F  S  F  S  F  K  E  N  H  L  D  Q  L  N  R  S  I  L  *  L  S  S  *  C  S  Y  I  L  K  *  C  Y  S  E  T  K  *  S  D  S  K :   *  Q  G  Q  K  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0068C01.2" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93461" stop="93329"/>
                    <exon start="92081" stop="91916"/>
                    <exon start="91382" stop="91181"/>
                    <exon start="91092" stop="90932"/>
                    <exon start="90808" stop="90715"/>
                    <exon start="90296" stop="90084"/>
                    <exon start="89929" stop="89849"/>
                    <exon start="89210" stop="88992"/>
                    <exon start="88747" stop="88538"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1476</number_coding_nucleotides>
                  <number_encoded_amino_acids>492</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MMEPLMKIWSFDLVAWRGFLFSALILNFIFACQLFFLQPLVSALDAKPGDAAALFERVAQNVKVKKYSEALNDLNSAIEADPTLSEAYWHRASLLRQLCRYEESEKSYKKFLEMKPRDSAAEKELSQMHQAKSALDSATNLLDTDDIKKALEYIDKVVLVFSPACSKAKLLKVKLLLADKDYSGVISEAGFILKEDEDNLEALLLRGRAYYYLADHDVSLRHYQKGLRSDPEHGELKKAYFGLKNLLKKTKSADDNVSKGKFRLAVEEYKAALALDPNHSAHNVNLHLGLCKVLVKLGRGKDAISSCSEALELDGELIDALVQRGEAKLLTEDWEGAVADLKEAAEKSPQDRNIREVLMRAERSLKLSKRKDWYKILGVSKTSSVSEIKKAYKKLALQWHPDKNVDNREEAEEKFREIAAAYEVLGDEEKRTRYDQGEDIEDMGSGMGGGGFNPFGGGFGGGFGGGGQQYTFHFEGGFPGGGGGGGFGGFHF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="94668" PGL_stop="95126"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="94668" e_stop="95126"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.902"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.902">
            <gDNA_exon_boundary e_start="94668" e_stop="95126" e_length="459"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94668" stop="95126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243215" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTATTATAGATGACCAAATTTTTTCTTCAAATACGGAATTAAATTACAATACACACAAAAAAAATAGTTTAAATTTTTTTTCTTTAAACTAAAGAATGAAAGAAAAAACAAAATAAGAATAAGAAACTCAAATAATTATAATAAAAGAAGTCAAAAAATAATTTATGTATGAAAAAAATTAAAATATACCTTGAACTTTGATAAAAGAATCATATATACCCCTAAATAATTTTTTAAAAAAATTAGAAGTAACAAATATAAATTTAAAAATAATTTTTTAATTTCCGTTAAATAAAGGGTATATGTGAGCCATTTTGTAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGGTAAGGGCATATATGAGACACTTTTATAACGAGGATATATCAGCTCTAAATGACAAAGTCGAGGGGTATATCAGACCCTTTCCCCTAAATTTATTTTATTCTAAAC</gDNA_template>
            <first_frame> L  L  *  M  T  K  F  F  L  Q  I  R  N  *  I  T  I  H  T  K  K  I  V  *  I  F  F  L  *  T  K  E  *  K  K  K  Q  N  K  N  K  K  L  K  *  L  *  *  K  K  S  K  N  N  L  C  M  K  K  I  K  I  Y  L  E  L  *  *  K  N  H  I  Y  P  *  I  I  F  *  K  N  *  K  *  Q  I  *  I  *  K  *  F  F  N  F  R  *  I  K  G  I  C  E  P  F  C  N  G  R  G  I  C  E  P  F  V  *  R  *  G  H  I  *  D  T  F  I  T  R  I  Y  Q  L  *  M  T  K  S  R  G  I  S  D  P  F  P  *  I  Y  F  I  L  N </first_frame>
            <second_frame>  Y  Y  R  *  P  N  F  F  F  K  Y  G  I  K  L  Q  Y  T  Q  K  K  *  F  K  F  F  F  F  K  L  K  N  E  R  K  N  K  I  R  I  R  N  S  N  N  Y  N  K  R  S  Q  K  I  I  Y  V  *  K  K  L  K  Y  T  L  N  F  D  K  R  I  I  Y  T  P  K  *  F  F  K  K  I  R  S  N  K  Y  K  F  K  N  N  F  L  I  S  V  K  *  R  V  Y  V  S  H  F  V  T  A  G  V  Y  V  S  R  L  Y  N  G  K  G  I  Y  E  T  L  L  *  R  G  Y  I  S  S  K  *  Q  S  R  G  V  Y  Q  T  L  S  P  K  F  I  L  F  *   </second_frame>
            <third_frame>   I  I  D  D  Q  I  F  S  S  N  T  E  L  N  Y  N  T  H  K  K  N  S  L  N  F  F  S  L  N  *  R  M  K  E  K  T  K  *  E  *  E  T  Q  I  I  I  I  K  E  V  K  K  *  F  M  Y  E  K  N  *  N  I  P  *  T  L  I  K  E  S  Y  I  P  L  N  N  F  L  K  K  L  E  V  T  N  I  N  L  K  I  I  F  *  F  P  L  N  K  G  Y  M  *  A  I  L  *  R  Q  G  Y  M  *  A  V  C  I  T  V  R  A  Y  M  R  H  F  Y  N  E  D  I  S  A  L  N  D  K  V  E  G  Y  I  R  P  F  P  L  N  L  F  Y  S  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLe0068C01.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="107567" PGL_stop="107310"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="107567" e_stop="107310"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.911"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.911">
            <gDNA_exon_boundary e_start="107567" e_stop="107310" e_length="258"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107567" stop="107310"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277851" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGTGTAGGTGACGGAATCACGAATCACATTCTCCAAAAAGATCTTCAATACTCCACGGGTCGATCTCCTCATAGATGAGACAAGAGATACGCTTCACACCACCCCTACGAGCAAGCCTGTGAATAGCTGGCTTAGTGATTCCCTGGATGTTGTCTCTTAGAACCTTCTTGTGCCTCTTGGCTCCTCCCTTTCCCAATCCCTTACCTCGTTTTCCATGACCAGACATTTTCACGGAGAAATTTGAAGAAGATGAAGTTT</gDNA_template>
            <first_frame> S  V  G  D  G  I  T  N  H  I  L  Q  K  D  L  Q  Y  S  T  G  R  S  P  H  R  *  D  K  R  Y  A  S  H  H  P  Y  E  Q  A  C  E  *  L  A  *  *  F  P  G  C  C  L  L  E  P  S  C  A  S  W  L  L  P  F  P  I  P  Y  L  V  F  H  D  Q  T  F  S  R  R  N  L  K  K  M  K  F </first_frame>
            <second_frame>  V  *  V  T  E  S  R  I  T  F  S  K  K  I  F  N  T  P  R  V  D  L  L  I  D  E  T  R  D  T  L  H  T  T  P  T  S  K  P  V  N  S  W  L  S  D  S  L  D  V  V  S  *  N  L  L  V  P  L  G  S  S  L  S  Q  S  L  T  S  F  S  M  T  R  H  F  H  G  E  I  *  R  R  *  S   </second_frame>
            <third_frame>   C  R  *  R  N  H  E  S  H  S  P  K  R  S  S  I  L  H  G  S  I  S  S  *  M  R  Q  E  I  R  F  T  P  P  L  R  A  S  L  *  I  A  G  L  V  I  P  W  M  L  S  L  R  T  F  L  C  L  L  A  P  P  F  P  N  P  L  P  R  F  P  *  P  D  I  F  T  E  K  F  E  E  D  E  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLe0068C01.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="130316" PGL_stop="129877"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="130316" e_stop="129877"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.920"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.920">
            <gDNA_exon_boundary e_start="130316" e_stop="129877" e_length="440"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130316" stop="129877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243215" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTATTGTAGATGATCAAATTTTTTTTCGAATACGAAATTAAATTACAATACACACAAAAAAAATAGTTTAATTTTTTTCTCTTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGAATAAGAAACTCAAATGATTATAATAAAAGAAGTCACAAAATAATTTATGTATGAAAAAAAATTAAAATATACCTTAAACTTTGATAGAAAATCATATATACCCCTAAATAATTTTTTTAAAAAAAATAGAAGTAATAAATATAAATTTAAAACTAATTTTTTAACTTCCGTTAAATGAAGAGTATATGCGAGCCATTTTGTAACGACAGGGGTATATATGAGCCGTTTGTATAACGATAAGGGCATATATGAGCCACTTTTATAACGAGGGTATATTAGCTCCAAATGACAAAGTTGAGGGGTATATCAGACCCTTTTCCCT</gDNA_template>
            <first_frame> L  L  *  M  I  K  F  F  F  E  Y  E  I  K  L  Q  Y  T  Q  K  K  *  F  N  F  F  L  F  K  L  R  N  E  R  K  K  Q  N  K  N  K  K  L  K  *  L  *  *  K  K  S  Q  N  N  L  C  M  K  K  N  *  N  I  P  *  T  L  I  E  N  H  I  Y  P  *  I  I  F  L  K  K  I  E  V  I  N  I  N  L  K  L  I  F  *  L  P  L  N  E  E  Y  M  R  A  I  L  *  R  Q  G  Y  I  *  A  V  C  I  T  I  R  A  Y  M  S  H  F  Y  N  E  G  I  L  A  P  N  D  K  V  E  G  Y  I  R  P  F  S   </first_frame>
            <second_frame>  Y  C  R  *  S  N  F  F  S  N  T  K  L  N  Y  N  T  H  K  K  N  S  L  I  F  F  S  L  N  *  G  M  K  E  K  N  K  I  R  I  R  N  S  N  D  Y  N  K  R  S  H  K  I  I  Y  V  *  K  K  I  K  I  Y  L  K  L  *  *  K  I  I  Y  T  P  K  *  F  F  *  K  K  *  K  *  *  I  *  I  *  N  *  F  F  N  F  R  *  M  K  S  I  C  E  P  F  C  N  D  R  G  I  Y  E  P  F  V  *  R  *  G  H  I  *  A  T  F  I  T  R  V  Y  *  L  Q  M  T  K  L  R  G  I  S  D  P  F  P  </second_frame>
            <third_frame>   I  V  D  D  Q  I  F  F  R  I  R  N  *  I  T  I  H  T  K  K  I  V  *  F  F  S  L  *  T  K  E  *  K  K  K  T  K  *  E  *  E  T  Q  M  I  I  I  K  E  V  T  K  *  F  M  Y  E  K  K  L  K  Y  T  L  N  F  D  R  K  S  Y  I  P  L  N  N  F  F  K  K  N  R  S  N  K  Y  K  F  K  T  N  F  L  T  S  V  K  *  R  V  Y  A  S  H  F  V  T  T  G  V  Y  M  S  R  L  Y  N  D  K  G  I  Y  E  P  L  L  *  R  G  Y  I  S  S  K  *  Q  S  *  G  V  Y  Q  T  L  F  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLe0068C01.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="136087" PGL_stop="137195"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="136087" e_stop="136104"/>
            <exon e_start="136714" e_stop="137195"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.833"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.833">
            <gDNA_exon_boundary e_start="136087" e_stop="136104" e_length="18"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="136105" i_stop="136713" i_length="609"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="136714" e_stop="137195" e_length="482"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136087" stop="136104"/>
              <exon start="136714" stop="137195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239313" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTCTTTTTTCCTTTTTT : ATAAAAACAATTCTTATTTTTATTTTTTTAGAGGAAGAAAACGTAAATAACATATATTCGAGACATCACCAGCCAGATGGTAAAAGTGCAATTACAGATTTTTCTATTCAAATTGTACGCCAAAAACAACTGATAAACCACAGAACAGTTAAAAAACAACAAATCAACTCATTATCCCTGGAGATTGGATCCACCTCATCTCCTAGACCTTTGCTTCGCCTTCGAGTCAAAATGGTGAGCTCTAAGCTTTTTCTTTTTCGTAAAAGTTGTCTGTCCACCAGAACCTTCTCTAAATGGCATACCCATGAGAGCCAACAATCTGTGTGCCTCTTTATCTGTCTCAGCTGTTGTTGTTATGCAAACATCCATCCCTCTTGGCTTACCAAGAGCATCATAACTTAACTCTGGGAAGACACTCTGTTCACGAAAGCCAATGCTATAATTTCCATGACCATCAAAGCTATTGGGGTTTACGCCTTGAA</gDNA_template>
            <first_frame> F  L  F  S  F  F  :  I  K  T  I  L  I  F  I  F  L  E  E  E  N  V  N  N  I  Y  S  R  H  H  Q  P  D  G  K  S  A  I  T  D  F  S  I  Q  I  V  R  Q  K  Q  L  I  N  H  R  T  V  K  K  Q  Q  I  N  S  L  S  L  E  I  G  S  T  S  S  P  R  P  L  L  R  L  R  V  K  M  V  S  S  K  L  F  L  F  R  K  S  C  L  S  T  R  T  F  S  K  W  H  T  H  E  S  Q  Q  S  V  C  L  F  I  C  L  S  C  C  C  Y  A  N  I  H  P  S  W  L  T  K  S  I  I  T  *  L  W  E  D  T  L  F  T  K  A  N  A  I  I  S  M  T  I  K  A  I  G  V  Y  A  L   </first_frame>
            <second_frame>  F  F  F  P  F  L :   *  K  Q  F  L  F  L  F  F  *  R  K  K  T  *  I  T  Y  I  R  D  I  T  S  Q  M  V  K  V  Q  L  Q  I  F  L  F  K  L  Y  A  K  N  N  *  *  T  T  E  Q  L  K  N  N  K  S  T  H  Y  P  W  R  L  D  P  P  H  L  L  D  L  C  F  A  F  E  S  K  W  *  A  L  S  F  F  F  F  V  K  V  V  C  P  P  E  P  S  L  N  G  I  P  M  R  A  N  N  L  C  A  S  L  S  V  S  A  V  V  V  M  Q  T  S  I  P  L  G  L  P  R  A  S  *  L  N  S  G  K  T  L  C  S  R  K  P  M  L  *  F  P  *  P  S  K  L  L  G  F  T  P  *  </second_frame>
            <third_frame>   S  F  F  L  F   : Y  K  N  N  S  Y  F  Y  F  F  R  G  R  K  R  K  *  H  I  F  E  T  S  P  A  R  W  *  K  C  N  Y  R  F  F  Y  S  N  C  T  P  K  T  T  D  K  P  Q  N  S  *  K  T  T  N  Q  L  I  I  P  G  D  W  I  H  L  I  S  *  T  F  A  S  P  S  S  Q  N  G  E  L  *  A  F  S  F  S  *  K  L  S  V  H  Q  N  L  L  *  M  A  Y  P  *  E  P  T  I  C  V  P  L  Y  L  S  Q  L  L  L  L  C  K  H  P  S  L  L  A  Y  Q  E  H  H  N  L  T  L  G  R  H  S  V  H  E  S  Q  C  Y  N  F  H  D  H  Q  S  Y  W  G  L  R  L  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0068C01.2" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="136087" stop="136104"/>
                    <exon start="136714" stop="137115"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>417</number_coding_nucleotides>
                  <number_encoded_amino_acids>139</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLFSFFIKTILIFIFLEEENVNNIYSRHHQPDGKSAITDFSIQIVRQKQLINHRTVKKQQINSLSLEIGSTSSPRPLLRLRVKMVSSKLFLFRKSCLSTRTFSKWHTHESQQSVCLFICLSCCCYANIHPSWLTKSIIT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="136088" e_stop="136109"/>
            <exon e_start="136718" e_stop="137029"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.773"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.773">
            <gDNA_exon_boundary e_start="136088" e_stop="136109" e_length="22"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="136110" i_stop="136717" i_length="608"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="136718" e_stop="137029" e_length="312"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136088" stop="136109"/>
              <exon start="136718" stop="137029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238943" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCTTTTTTCCTTTTTTAAGGG : AAACAATTCTTATTTTTATTTTTTTAGAGGAAGAAAACGTAAATAACATATATTCGAGACATCACCAGCCAGATGGTAAAAGTGCAATTACAGATTTTTCTATTCAAATTGTACGCCAAAAACAACTGATAAACCACAGAACAGTTAAAAAACAACAAATCAACTCATTATCCCTGGAGATTGGATCCACCTCATCTCCTAGACCTTTGCTTCGCCTTCGAGTCAAAATGGTGAGCTCTAAGCTTTTTCTTTTTCGTAAAAGTTGTCTGTCCACCAGAACCTTCTCTAAATGGCATACCCATGAGAGCCAAC</gDNA_template>
            <first_frame> F  F  F  P  F  L  R   : E  T  I  L  I  F  I  F  L  E  E  E  N  V  N  N  I  Y  S  R  H  H  Q  P  D  G  K  S  A  I  T  D  F  S  I  Q  I  V  R  Q  K  Q  L  I  N  H  R  T  V  K  K  Q  Q  I  N  S  L  S  L  E  I  G  S  T  S  S  P  R  P  L  L  R  L  R  V  K  M  V  S  S  K  L  F  L  F  R  K  S  C  L  S  T  R  T  F  S  K  W  H  T  H  E  S  Q  </first_frame>
            <second_frame>  S  F  F  L  F  *  G  :  K  Q  F  L  F  L  F  F  *  R  K  K  T  *  I  T  Y  I  R  D  I  T  S  Q  M  V  K  V  Q  L  Q  I  F  L  F  K  L  Y  A  K  N  N  *  *  T  T  E  Q  L  K  N  N  K  S  T  H  Y  P  W  R  L  D  P  P  H  L  L  D  L  C  F  A  F  E  S  K  W  *  A  L  S  F  F  F  F  V  K  V  V  C  P  P  E  P  S  L  N  G  I  P  M  R  A  N </second_frame>
            <third_frame>   L  F  S  F  F  K  G :   N  N  S  Y  F  Y  F  F  R  G  R  K  R  K  *  H  I  F  E  T  S  P  A  R  W  *  K  C  N  Y  R  F  F  Y  S  N  C  T  P  K  T  T  D  K  P  Q  N  S  *  K  T  T  N  Q  L  I  I  P  G  D  W  I  H  L  I  S  *  T  F  A  S  P  S  S  Q  N  G  E  L  *  A  F  S  F  S  *  K  L  S  V  H  Q  N  L  L  *  M  A  Y  P  *  E  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0068C01.2" strand="+"/>
                <serials PGL_serial="17" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="136088" stop="136109"/>
                    <exon start="136718" stop="137028"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>333</number_coding_nucleotides>
                  <number_encoded_amino_acids>111</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFFPFLRETILIFIFLEEENVNNIYSRHHQPDGKSAITDFSIQIVRQKQLINHRTVKKQQINSLSLEIGSTSSPRPLLRLRVKMVSSKLFLFRKSCLSTRTFSKWHTHESQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="138199" PGL_stop="136088"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="138199" e_stop="137883"/>
            <exon e_start="137454" e_stop="136638"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="138199" e_stop="137883" e_length="317"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="0.999">
            <gDNA_intron_boundary i_start="137882" i_stop="137455" i_length="428"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="137454" e_stop="136638" e_length="817"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="138199" stop="137883"/>
              <exon start="137454" stop="137100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342016" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="138184" stop="137883"/>
              <exon start="137454" stop="137055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347775" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="138180" stop="137883"/>
              <exon start="137454" stop="137145"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322615" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="138161" stop="137883"/>
              <exon start="137454" stop="137015"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734704" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="138153" stop="137883"/>
              <exon start="137454" stop="136787"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733836" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="138152" stop="137883"/>
              <exon start="137454" stop="137275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292760" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="138151" stop="137883"/>
              <exon start="137454" stop="136897"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706016" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="138150" stop="137883"/>
              <exon start="137454" stop="136915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702078" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="138139" stop="137883"/>
              <exon start="137454" stop="136855"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="138139" stop="137883"/>
              <exon start="137454" stop="137261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289459" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="138060" stop="137883"/>
              <exon start="137454" stop="136936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346430" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="138027" stop="137883"/>
              <exon start="137454" stop="136935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343227" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="137949" stop="137883"/>
              <exon start="137454" stop="136695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735239" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="137936" stop="137883"/>
              <exon start="137454" stop="136793"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555267" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="137439" stop="136741"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717251" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="137280" stop="136726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284487" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="137172" stop="136709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712801" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="137158" stop="136733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342488" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="137146" stop="136638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321662" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="137128" stop="136716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223264" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="137119" stop="136716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223620" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACAAAGAACATCTTATCCAATTACCCTTTTATTTTTCACACACAGAGAGAAAAAGCTCAGAGAAAATGGCGGCTTCTCCTCTTCTTCTACACTCCACGGCCTCCTCTTTCTACAATGCTGAGTTTCCGGCGTACTCCGTTCGATTGCCGGTCGGAAATACCAAGGTCCGGTCGTCCAATAAATTGACGGTGAAAGCTTCAGCAACAGTACTAGTGGATAAAAGTGAAGCTGAAAAAGTTAATCGTCTGAAAACAAATTACCTCGAAAAGATTGTGCCGTTGTTGAAGGAAGAATTCAGTTACACCAATATTCTTCAG : GTTCCGAAGGTCGAAAAGATTGTGGTAAATTGTGGTATAGGAGATGCTGCACAAAATTCCAAGGGTTTGGATGCAGCAATGAATGATTTGGCCTTAATTACAGGGCAAAGGCCTGTGAAGACTAGGGCTAAGAATGCTATTGCTACTTTCAAAATTAGAGAAGGTCAACCGCTTGGAATTGCTGTTACACTTCGAGGGAATGTAATGTATTCGTTCCTTGACCGGTTAATTAATTTGGGGCTTCCTCGAACGAGGGACTTTCAAGGCGTAAACCCCAATAGCTTTGATGGTCATGGAAATTATAGCATTGGCTTTCGTGAACAGAGTGTCTTCCCAGAGTTAAGTTATGATGCTCTTGGTAAGCCAAGAGGGATGGATGTTTGCATAACAACAACAGCTGAGACAGATAAAGAGGCACACAGATTGTTGGCTCTCATGGGTATGCCATTTAGAGAAGGTTCTGGTGGACAGACAACTTTTACGAAAAAGAAAAAGCTTAGAGCTCACCATTTTGACTCGAAGGCGAAGCAAAGGTCTAGGAGATGAGGTGGATCCAATCTCCAGGGATAATGAGTTGATTTGTTGTTTTTTAACTGTTCTGTGGTTTATCAGTTGTTTTTGGCGTACAATTTGAATAGAAAAATCTGTAATTGCACTTTTACCATCTGGCTGGTGATGTCTCGAATATATGTTATTTACGTTTTCTTCCTCTAAAAAAATAAAAATAAGAATTGTTTTTATCTCTAGTTAAGTTTTTACTATTCATGAATCTTGATTACTGTAATTTGTATGTTATTAAATATTTCCTACCCGCTCC</gDNA_template>
            <first_frame> T  K  N  I  L  S  N  Y  P  F  I  F  H  T  Q  R  E  K  A  Q  R  K  W  R  L  L  L  F  F  Y  T  P  R  P  P  L  S  T  M  L  S  F  R  R  T  P  F  D  C  R  S  E  I  P  R  S  G  R  P  I  N  *  R  *  K  L  Q  Q  Q  Y  *  W  I  K  V  K  L  K  K  L  I  V  *  K  Q  I  T  S  K  R  L  C  R  C  *  R  K  N  S  V  T  P  I  F  F  R :   F  R  R  S  K  R  L  W  *  I  V  V  *  E  M  L  H  K  I  P  R  V  W  M  Q  Q  *  M  I  W  P  *  L  Q  G  K  G  L  *  R  L  G  L  R  M  L  L  L  L  S  K  L  E  K  V  N  R  L  E  L  L  L  H  F  E  G  M  *  C  I  R  S  L  T  G  *  L  I  W  G  F  L  E  R  G  T  F  K  A  *  T  P  I  A  L  M  V  M  E  I  I  A  L  A  F  V  N  R  V  S  S  Q  S  *  V  M  M  L  L  V  S  Q  E  G  W  M  F  A  *  Q  Q  Q  L  R  Q  I  K  R  H  T  D  C  W  L  S  W  V  C  H  L  E  K  V  L  V  D  R  Q  L  L  R  K  R  K  S  L  E  L  T  I  L  T  R  R  R  S  K  G  L  G  D  E  V  D  P  I  S  R  D  N  E  L  I  C  C  F  L  T  V  L  W  F  I  S  C  F  W  R  T  I  *  I  E  K  S  V  I  A  L  L  P  S  G  W  *  C  L  E  Y  M  L  F  T  F  S  S  S  K  K  I  K  I  R  I  V  F  I  S  S  *  V  F  T  I  H  E  S  *  L  L  *  F  V  C  Y  *  I  F  P  T  R  S </first_frame>
            <second_frame>  Q  R  T  S  Y  P  I  T  L  L  F  F  T  H  R  E  K  K  L  R  E  N  G  G  F  S  S  S  S  T  L  H  G  L  L  F  L  Q  C  *  V  S  G  V  L  R  S  I  A  G  R  K  Y  Q  G  P  V  V  Q  *  I  D  G  E  S  F  S  N  S  T  S  G  *  K  *  S  *  K  S  *  S  S  E  N  K  L  P  R  K  D  C  A  V  V  E  G  R  I  Q  L  H  Q  Y  S  S   : G  S  E  G  R  K  D  C  G  K  L  W  Y  R  R  C  C  T  K  F  Q  G  F  G  C  S  N  E  *  F  G  L  N  Y  R  A  K  A  C  E  D  *  G  *  E  C  Y  C  Y  F  Q  N  *  R  R  S  T  A  W  N  C  C  Y  T  S  R  E  C  N  V  F  V  P  *  P  V  N  *  F  G  A  S  S  N  E  G  L  S  R  R  K  P  Q  *  L  *  W  S  W  K  L  *  H  W  L  S  *  T  E  C  L  P  R  V  K  L  *  C  S  W  *  A  K  R  D  G  C  L  H  N  N  N  S  *  D  R  *  R  G  T  Q  I  V  G  S  H  G  Y  A  I  *  R  R  F  W  W  T  D  N  F  Y  E  K  E  K  A  *  S  S  P  F  *  L  E  G  E  A  K  V  *  E  M  R  W  I  Q  S  P  G  I  M  S  *  F  V  V  F  *  L  F  C  G  L  S  V  V  F  G  V  Q  F  E  *  K  N  L  *  L  H  F  Y  H  L  A  G  D  V  S  N  I  C  Y  L  R  F  L  P  L  K  K  *  K  *  E  L  F  L  S  L  V  K  F  L  L  F  M  N  L  D  Y  C  N  L  Y  V  I  K  Y  F  L  P  A   </second_frame>
            <third_frame>   K  E  H  L  I  Q  L  P  F  Y  F  S  H  T  E  R  K  S  S  E  K  M  A  A  S  P  L  L  L  H  S  T  A  S  S  F  Y  N  A  E  F  P  A  Y  S  V  R  L  P  V  G  N  T  K  V  R  S  S  N  K  L  T  V  K  A  S  A  T  V  L  V  D  K  S  E  A  E  K  V  N  R  L  K  T  N  Y  L  E  K  I  V  P  L  L  K  E  E  F  S  Y  T  N  I  L  Q  :  V  P  K  V  E  K  I  V  V  N  C  G  I  G  D  A  A  Q  N  S  K  G  L  D  A  A  M  N  D  L  A  L  I  T  G  Q  R  P  V  K  T  R  A  K  N  A  I  A  T  F  K  I  R  E  G  Q  P  L  G  I  A  V  T  L  R  G  N  V  M  Y  S  F  L  D  R  L  I  N  L  G  L  P  R  T  R  D  F  Q  G  V  N  P  N  S  F  D  G  H  G  N  Y  S  I  G  F  R  E  Q  S  V  F  P  E  L  S  Y  D  A  L  G  K  P  R  G  M  D  V  C  I  T  T  T  A  E  T  D  K  E  A  H  R  L  L  A  L  M  G  M  P  F  R  E  G  S  G  G  Q  T  T  F  T  K  K  K  K  L  R  A  H  H  F  D  S  K  A  K  Q  R  S  R  R  *  G  G  S  N  L  Q  G  *  *  V  D  L  L  F  F  N  C  S  V  V  Y  Q  L  F  L  A  Y  N  L  N  R  K  I  C  N  C  T  F  T  I  W  L  V  M  S  R  I  Y  V  I  Y  V  F  F  L  *  K  N  K  N  K  N  C  F  Y  L  *  L  S  F  Y  Y  S  *  I  L  I  T  V  I  C  M  L  L  N  I  S  Y  P  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0068C01.2" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="138197" stop="137883"/>
                    <exon start="137454" stop="136909"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>858</number_coding_nucleotides>
                  <number_encoded_amino_acids>286</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KEHLIQLPFYFSHTERKSSEKMAASPLLLHSTASSFYNAEFPAYSVRLPVGNTKVRSSNKLTVKASATVLVDKSEAEKVNRLKTNYLEKIVPLLKEEFSYTNILQVPKVEKIVVNCGIGDAAQNSKGLDAAMNDLALITGQRPVKTRAKNAIATFKIREGQPLGIAVTLRGNVMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGFREQSVFPELSYDALGKPRGMDVCITTTAETDKEAHRLLALMGMPFREGSGGQTTFTKKKKLRAHHFDSKAKQRSRR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="138199" e_stop="137883"/>
            <exon e_start="137454" e_stop="136787"/>
            <exon e_start="136097" e_stop="136088"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.000" e_score="0.998"/>
          <exon-only e_score="0.800"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="138199" e_stop="137883" e_length="317"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="0.999">
            <gDNA_intron_boundary i_start="137882" i_stop="137455" i_length="428"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="137454" e_stop="136787" e_length="668"/>
          </exon>
          <intron i_serial="2" don_prob="0.970" acc_prob="0.000">
            <gDNA_intron_boundary i_start="136786" i_stop="136098" i_length="689"/>
          </intron>
          <exon e_serial="3" e_score="0.800">
            <gDNA_exon_boundary e_start="136097" e_stop="136088" e_length="10"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="138199" stop="137883"/>
              <exon start="137454" stop="137100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342016" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="138184" stop="137883"/>
              <exon start="137454" stop="137055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347775" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="138180" stop="137883"/>
              <exon start="137454" stop="137145"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322615" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="138161" stop="137883"/>
              <exon start="137454" stop="137015"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734704" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="138153" stop="137883"/>
              <exon start="137454" stop="136787"/>
              <exon start="136097" stop="136088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734481" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="138153" stop="137883"/>
              <exon start="137454" stop="136787"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733836" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="138152" stop="137883"/>
              <exon start="137454" stop="137275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292760" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="138151" stop="137883"/>
              <exon start="137454" stop="136897"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706016" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="138150" stop="137883"/>
              <exon start="137454" stop="136915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702078" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="138139" stop="137883"/>
              <exon start="137454" stop="136855"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="138139" stop="137883"/>
              <exon start="137454" stop="137261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289459" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="138060" stop="137883"/>
              <exon start="137454" stop="136936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346430" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="138027" stop="137883"/>
              <exon start="137454" stop="136935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343227" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="137936" stop="137883"/>
              <exon start="137454" stop="136793"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555267" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACAAAGAACATCTTATCCAATTACCCTTTTATTTTTCACACACAGAGAGAAAAAGCTCAGAGAAAATGGCGGCTTCTCCTCTTCTTCTACACTCCACGGCCTCCTCTTTCTACAATGCTGAGTTTCCGGCGTACTCCGTTCGATTGCCGGTCGGAAATACCAAGGTCCGGTCGTCCAATAAATTGACGGTGAAAGCTTCAGCAACAGTACTAGTGGATAAAAGTGAAGCTGAAAAAGTTAATCGTCTGAAAACAAATTACCTCGAAAAGATTGTGCCGTTGTTGAAGGAAGAATTCAGTTACACCAATATTCTTCAG : GTTCCGAAGGTCGAAAAGATTGTGGTAAATTGTGGTATAGGAGATGCTGCACAAAATTCCAAGGGTTTGGATGCAGCAATGAATGATTTGGCCTTAATTACAGGGCAAAGGCCTGTGAAGACTAGGGCTAAGAATGCTATTGCTACTTTCAAAATTAGAGAAGGTCAACCGCTTGGAATTGCTGTTACACTTCGAGGGAATGTAATGTATTCGTTCCTTGACCGGTTAATTAATTTGGGGCTTCCTCGAACGAGGGACTTTCAAGGCGTAAACCCCAATAGCTTTGATGGTCATGGAAATTATAGCATTGGCTTTCGTGAACAGAGTGTCTTCCCAGAGTTAAGTTATGATGCTCTTGGTAAGCCAAGAGGGATGGATGTTTGCATAACAACAACAGCTGAGACAGATAAAGAGGCACACAGATTGTTGGCTCTCATGGGTATGCCATTTAGAGAAGGTTCTGGTGGACAGACAACTTTTACGAAAAAGAAAAAGCTTAGAGCTCACCATTTTGACTCGAAGGCGAAGCAAAGGTCTAGGAGATGAGGTGGATCCAATCTCCAGGGATAATGAGTTGATTTGTTGTTTTTTAACTGTTCTGTGGTTTATCAGTTGTTTTTGGCGTACAATTTGAATAGAAAAATCTGTAATTGCACTTTTACCATCTG : GAAAAAAGAA</gDNA_template>
            <first_frame> T  K  N  I  L  S  N  Y  P  F  I  F  H  T  Q  R  E  K  A  Q  R  K  W  R  L  L  L  F  F  Y  T  P  R  P  P  L  S  T  M  L  S  F  R  R  T  P  F  D  C  R  S  E  I  P  R  S  G  R  P  I  N  *  R  *  K  L  Q  Q  Q  Y  *  W  I  K  V  K  L  K  K  L  I  V  *  K  Q  I  T  S  K  R  L  C  R  C  *  R  K  N  S  V  T  P  I  F  F  R :   F  R  R  S  K  R  L  W  *  I  V  V  *  E  M  L  H  K  I  P  R  V  W  M  Q  Q  *  M  I  W  P  *  L  Q  G  K  G  L  *  R  L  G  L  R  M  L  L  L  L  S  K  L  E  K  V  N  R  L  E  L  L  L  H  F  E  G  M  *  C  I  R  S  L  T  G  *  L  I  W  G  F  L  E  R  G  T  F  K  A  *  T  P  I  A  L  M  V  M  E  I  I  A  L  A  F  V  N  R  V  S  S  Q  S  *  V  M  M  L  L  V  S  Q  E  G  W  M  F  A  *  Q  Q  Q  L  R  Q  I  K  R  H  T  D  C  W  L  S  W  V  C  H  L  E  K  V  L  V  D  R  Q  L  L  R  K  R  K  S  L  E  L  T  I  L  T  R  R  R  S  K  G  L  G  D  E  V  D  P  I  S  R  D  N  E  L  I  C  C  F  L  T  V  L  W  F  I  S  C  F  W  R  T  I  *  I  E  K  S  V  I  A  L  L  P  S   : G  K  K   </first_frame>
            <second_frame>  Q  R  T  S  Y  P  I  T  L  L  F  F  T  H  R  E  K  K  L  R  E  N  G  G  F  S  S  S  S  T  L  H  G  L  L  F  L  Q  C  *  V  S  G  V  L  R  S  I  A  G  R  K  Y  Q  G  P  V  V  Q  *  I  D  G  E  S  F  S  N  S  T  S  G  *  K  *  S  *  K  S  *  S  S  E  N  K  L  P  R  K  D  C  A  V  V  E  G  R  I  Q  L  H  Q  Y  S  S   : G  S  E  G  R  K  D  C  G  K  L  W  Y  R  R  C  C  T  K  F  Q  G  F  G  C  S  N  E  *  F  G  L  N  Y  R  A  K  A  C  E  D  *  G  *  E  C  Y  C  Y  F  Q  N  *  R  R  S  T  A  W  N  C  C  Y  T  S  R  E  C  N  V  F  V  P  *  P  V  N  *  F  G  A  S  S  N  E  G  L  S  R  R  K  P  Q  *  L  *  W  S  W  K  L  *  H  W  L  S  *  T  E  C  L  P  R  V  K  L  *  C  S  W  *  A  K  R  D  G  C  L  H  N  N  N  S  *  D  R  *  R  G  T  Q  I  V  G  S  H  G  Y  A  I  *  R  R  F  W  W  T  D  N  F  Y  E  K  E  K  A  *  S  S  P  F  *  L  E  G  E  A  K  V  *  E  M  R  W  I  Q  S  P  G  I  M  S  *  F  V  V  F  *  L  F  C  G  L  S  V  V  F  G  V  Q  F  E  *  K  N  L  *  L  H  F  Y  H  L  :  E  K  R  </second_frame>
            <third_frame>   K  E  H  L  I  Q  L  P  F  Y  F  S  H  T  E  R  K  S  S  E  K  M  A  A  S  P  L  L  L  H  S  T  A  S  S  F  Y  N  A  E  F  P  A  Y  S  V  R  L  P  V  G  N  T  K  V  R  S  S  N  K  L  T  V  K  A  S  A  T  V  L  V  D  K  S  E  A  E  K  V  N  R  L  K  T  N  Y  L  E  K  I  V  P  L  L  K  E  E  F  S  Y  T  N  I  L  Q  :  V  P  K  V  E  K  I  V  V  N  C  G  I  G  D  A  A  Q  N  S  K  G  L  D  A  A  M  N  D  L  A  L  I  T  G  Q  R  P  V  K  T  R  A  K  N  A  I  A  T  F  K  I  R  E  G  Q  P  L  G  I  A  V  T  L  R  G  N  V  M  Y  S  F  L  D  R  L  I  N  L  G  L  P  R  T  R  D  F  Q  G  V  N  P  N  S  F  D  G  H  G  N  Y  S  I  G  F  R  E  Q  S  V  F  P  E  L  S  Y  D  A  L  G  K  P  R  G  M  D  V  C  I  T  T  T  A  E  T  D  K  E  A  H  R  L  L  A  L  M  G  M  P  F  R  E  G  S  G  G  Q  T  T  F  T  K  K  K  K  L  R  A  H  H  F  D  S  K  A  K  Q  R  S  R  R  *  G  G  S  N  L  Q  G  *  *  V  D  L  L  F  F  N  C  S  V  V  Y  Q  L  F  L  A  Y  N  L  N  R  K  I  C  N  C  T  F  T  I  W :   K  K  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0068C01.2" strand="-"/>
                <serials PGL_serial="18" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="138197" stop="137883"/>
                    <exon start="137454" stop="136909"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>858</number_coding_nucleotides>
                  <number_encoded_amino_acids>286</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KEHLIQLPFYFSHTERKSSEKMAASPLLLHSTASSFYNAEFPAYSVRLPVGNTKVRSSNKLTVKASATVLVDKSEAEKVNRLKTNYLEKIVPLLKEEFSYTNILQVPKVEKIVVNCGIGDAAQNSKGLDAAMNDLALITGQRPVKTRAKNAIATFKIREGQPLGIAVTLRGNVMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGFREQSVFPELSYDALGKPRGMDVCITTTAETDKEAHRLLALMGMPFREGSGGQTTFTKKKKLRAHHFDSKAKQRSRR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 386 chains have been computed
$ 
$ memory statistics:
$ 1018600 bytes spliced alignments in total
$ 109 spliced alignments have been stored
$ 9344 bytes was the average size of a spliced alignment
$ 28352 bytes predicted gene locations in total
$ 18 predicted gene locations have been stored
$ 1575 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 412 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-19 11:36:51
-->
