<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 00:05:46"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E213582" ref_strand="+" ref_description="SGN-E213582 [cLEC-71-N24]">
      <seq>aactttctaaaacattatgttaaaactaataaaaaataagttcacgtctgaaaggagtttagattgaaggttttggtacgaaatgttaaatagagatgatatcttctacacgatagaaaatatattaatataattttatagattctgattcgacactaaacatatatatatatatattaaggtggttgtgaggtagacaactgggattcgaaattatttaaagttgagcatattattattattattattatctcgaacagatgcatagatgaagacttcaaaaagaaaaaataataaacaaagacaagtaacatcatcatatttttttaaataatgaataaagtaagatgagtcatcacttatatatttgtttattaatggcatggccatatatatatatatatattatatatcttgttttggcatttctagacatacagatcttattcacatgagtccacaccgtgtgaaaactctaattccaacaacaattttttgaaattctattgaatttttgtgagtggtagctttaattggtaaaaataattagtgcgattatttttgacattgtgagcttttcaagtcaaagtcataactaaaatttagtattgtcgtacgtatcttaaaatatcagatgaaatgattatatttttttaaaaatataaaaatttgaatgacgttaaaattatgatcatatttcaatatcatttcaaattatagtcttgaatttctatataactttcacataaggaacgtaatgaatgcatagctatatatattatattaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="+" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="6118" stop="7508"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6418" g_stop="7208" g_length="791"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="791" r_length="791" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="+" ref_id="SGN-E213582" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>791</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E213582" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6418" e_stop="7208"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTTCTAAAACATTATGTTAAAACTAATAAAAAATAAGTTCACGTCTGAAAGGAGTTTAGATTGAAGGTTTTGGTACGAAATGTTAAATAGAGATGATATCTTCTACACGATAGAAAATATATTAATATAATTTTATAGATTCTGATTCGACACTAAACATATATATATATATATTAAGGTGGTTGTGAGGTAGACAACTGGGATTCGAAATTATTTAAAGTTGAGCATATTATTATTATTATTATTATCTCGAACAGATGCATAGATGAAGACTTCAAAAAGAAAAAATAATAAACAAAGACAAGTAACATCATCATATTTTTTTAAATAATGAATAAAGTAAGATGAGTCATCACTTATATATTTGTTTATTAATGGCATGGCCATATATATATATATATATTATATATCTTGTTTTGGCATTTCTAGACATACAGATCTTATTCACATGAGTCCACACCGTGTGAAAACTCTAATTCCAACAACAATTTTTTGAAATTCTATTGAATTTTTGTGAGTGGTAGCTTTAATTGGTAAAAATAATTAGTGCGATTATTTTTGACATTGTGAGCTTTTCAAGTCAAAGTCATAACTAAAATTTAGTATTGTCGTACGTATCTTAAAATATCAGATGAAATGATTATATTTTTTTAAAAATATAAAAATTTGAGTGACGTGAAAATTATGATCATATTTCAATATCATTTCAAATTATAGTCTTGAATTTCTATATAACTTTCACGTAAGGAACGTAATGAATGCATAGCTATATATATTATATTGAAAAT</genome_strand>
        <mrna_strand>AACTTTCTAAAACATTATGTTAAAACTAATAAAAAATAAGTTCACGTCTGAAAGGAGTTTAGATTGAAGGTTTTGGTACGAAATGTTAAATAGAGATGATATCTTCTACACGATAGAAAATATATTAATATAATTTTATAGATTCTGATTCGACACTAAACATATATATATATATATTAAGGTGGTTGTGAGGTAGACAACTGGGATTCGAAATTATTTAAAGTTGAGCATATTATTATTATTATTATTATCTCGAACAGATGCATAGATGAAGACTTCAAAAAGAAAAAATAATAAACAAAGACAAGTAACATCATCATATTTTTTTAAATAATGAATAAAGTAAGATGAGTCATCACTTATATATTTGTTTATTAATGGCATGGCCATATATATATATATATATTATATATCTTGTTTTGGCATTTCTAGACATACAGATCTTATTCACATGAGTCCACACCGTGTGAAAACTCTAATTCCAACAACAATTTTTTGAAATTCTATTGAATTTTTGTGAGTGGTAGCTTTAATTGGTAAAAATAATTAGTGCGATTATTTTTGACATTGTGAGCTTTTCAAGTCAAAGTCATAACTAAAATTTAGTATTGTCGTACGTATCTTAAAATATCAGATGAAATGATTATATTTTTTTAAAAATATAAAAATTTGAATGACGTTAAAATTATGATCATATTTCAATATCATTTCAAATTATAGTCTTGAATTTCTATATAACTTTCACATAAGGAACGTAATGAATGCATAGCTATATATATTATATTAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E379067" ref_strand="+" ref_description="SGN-E379067 [TUS-1-A15]">
      <seq>aactttctaaaacattatgttaaaactaataaaaaataagttcacgtctgaaaggagtttagattgaaggttttggtacgaaatgttaaatagagatgatatcttctacacgatagaaaatatattaatataattttatagattctgattcgacactaaacatatatatatatatattaaggtggttgtgaggtagacaactgggattcgaaattatttaaagttgagcatattattattattattattatctcgaacagatgcatagatgaagacttcaaaaagaaaaaataataaacaaagacaagtaacatcatcatatttttttaaataatgaataaagtaagatgagtcatcacttatatatttgtttattaatggcatggccatatatatatatatatattatatatcttgttttggcatttctagacatacagatcttattcacatgagtccacaccgtgtgaaaactctaattccaacaacaattttttgaaattctattgaatttttgtgagtggtagctttaattggtaaaaataattagtgcgattatttttgacattgtgagcttttcaagtcaaagtcataactaaaatttagtattgtcgtacgtatcttaaaatatcagatgaaatgattatatttttttaaaaatataaaaatttgaatgacgttaaaattatgatcatatttcaatatcatttcaaattatagtcttgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="+" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="6118" stop="7444"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6418" g_stop="7144" g_length="727"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="727" r_length="727" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="+" ref_id="SGN-E379067" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379067" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6418" e_stop="7144"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTTCTAAAACATTATGTTAAAACTAATAAAAAATAAGTTCACGTCTGAAAGGAGTTTAGATTGAAGGTTTTGGTACGAAATGTTAAATAGAGATGATATCTTCTACACGATAGAAAATATATTAATATAATTTTATAGATTCTGATTCGACACTAAACATATATATATATATATTAAGGTGGTTGTGAGGTAGACAACTGGGATTCGAAATTATTTAAAGTTGAGCATATTATTATTATTATTATTATCTCGAACAGATGCATAGATGAAGACTTCAAAAAGAAAAAATAATAAACAAAGACAAGTAACATCATCATATTTTTTTAAATAATGAATAAAGTAAGATGAGTCATCACTTATATATTTGTTTATTAATGGCATGGCCATATATATATATATATATTATATATCTTGTTTTGGCATTTCTAGACATACAGATCTTATTCACATGAGTCCACACCGTGTGAAAACTCTAATTCCAACAACAATTTTTTGAAATTCTATTGAATTTTTGTGAGTGGTAGCTTTAATTGGTAAAAATAATTAGTGCGATTATTTTTGACATTGTGAGCTTTTCAAGTCAAAGTCATAACTAAAATTTAGTATTGTCGTACGTATCTTAAAATATCAGATGAAATGATTATATTTTTTTAAAAATATAAAAATTTGAGTGACGTGAAAATTATGATCATATTTCAATATCATTTCAAATTATAGTCTTGAA</genome_strand>
        <mrna_strand>AACTTTCTAAAACATTATGTTAAAACTAATAAAAAATAAGTTCACGTCTGAAAGGAGTTTAGATTGAAGGTTTTGGTACGAAATGTTAAATAGAGATGATATCTTCTACACGATAGAAAATATATTAATATAATTTTATAGATTCTGATTCGACACTAAACATATATATATATATATTAAGGTGGTTGTGAGGTAGACAACTGGGATTCGAAATTATTTAAAGTTGAGCATATTATTATTATTATTATTATCTCGAACAGATGCATAGATGAAGACTTCAAAAAGAAAAAATAATAAACAAAGACAAGTAACATCATCATATTTTTTTAAATAATGAATAAAGTAAGATGAGTCATCACTTATATATTTGTTTATTAATGGCATGGCCATATATATATATATATATTATATATCTTGTTTTGGCATTTCTAGACATACAGATCTTATTCACATGAGTCCACACCGTGTGAAAACTCTAATTCCAACAACAATTTTTTGAAATTCTATTGAATTTTTGTGAGTGGTAGCTTTAATTGGTAAAAATAATTAGTGCGATTATTTTTGACATTGTGAGCTTTTCAAGTCAAAGTCATAACTAAAATTTAGTATTGTCGTACGTATCTTAAAATATCAGATGAAATGATTATATTTTTTTAAAAATATAAAAATTTGAATGACGTTAAAATTATGATCATATTTCAATATCATTTCAAATTATAGTCTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E200328" ref_strand="+" ref_description="SGN-E200328 [cLEC-1-G11]">
      <seq>aactttctaaaacattatgttaaaactaataaaaaataagttcacgtctgaaaggagtttagattgaaggttttggtacgaaatgttaaatagagatgatatcttctacacgatagaaaatatattaatataattttatagattctgattcgacactaaacatatatatatatatattaaggtggttgtgaggtagacaactgggattcgaaattatttaaagttgagcatattattattattattattatctcgaacagatgcatagatgaagacttcaaaaagaaaaaataataaacaaagacaagtaacatcatcatatttttttaaataatgaataaagtaagatgagtcatcacttatatatttgtttattaatggcatggccatatatatatatatatattatatatcttgttttggcatttctagacatacagatcttattcacatgagtccacaccgtgtgaaaactctaattccaacaacaattttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="+" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="6118" stop="7215"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6418" g_stop="6915" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="498" r_length="498" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="+" ref_id="SGN-E200328" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200328" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6418" e_stop="6915"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTTCTAAAACATTATGTTAAAACTAATAAAAAATAAGTTCACGTCTGAAAGGAGTTTAGATTGAAGGTTTTGGTACGAAATGTTAAATAGAGATGATATCTTCTACACGATAGAAAATATATTAATATAATTTTATAGATTCTGATTCGACACTAAACATATATATATATATATTAAGGTGGTTGTGAGGTAGACAACTGGGATTCGAAATTATTTAAAGTTGAGCATATTATTATTATTATTATTATCTCGAACAGATGCATAGATGAAGACTTCAAAAAGAAAAAATAATAAACAAAGACAAGTAACATCATCATATTTTTTTAAATAATGAATAAAGTAAGATGAGTCATCACTTATATATTTGTTTATTAATGGCATGGCCATATATATATATATATATTATATATCTTGTTTTGGCATTTCTAGACATACAGATCTTATTCACATGAGTCCACACCGTGTGAAAACTCTAATTCCAACAACAATTTTTTG</genome_strand>
        <mrna_strand>AACTTTCTAAAACATTATGTTAAAACTAATAAAAAATAAGTTCACGTCTGAAAGGAGTTTAGATTGAAGGTTTTGGTACGAAATGTTAAATAGAGATGATATCTTCTACACGATAGAAAATATATTAATATAATTTTATAGATTCTGATTCGACACTAAACATATATATATATATATTAAGGTGGTTGTGAGGTAGACAACTGGGATTCGAAATTATTTAAAGTTGAGCATATTATTATTATTATTATTATCTCGAACAGATGCATAGATGAAGACTTCAAAAAGAAAAAATAATAAACAAAGACAAGTAACATCATCATATTTTTTTAAATAATGAATAAAGTAAGATGAGTCATCACTTATATATTTGTTTATTAATGGCATGGCCATATATATATATATATATTATATATCTTGTTTTGGCATTTCTAGACATACAGATCTTATTCACATGAGTCCACACCGTGTGAAAACTCTAATTCCAACAACAATTTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E379020" ref_strand="+" ref_description="SGN-E379020 [TUS-1-A15](-)">
      <seq>tgtgaaaactctaattccaacaacaattttttgaaattctattgaatttttgtgagtggtagctttaattggtaaaaataattagtgcgattatttttgacattgtgagcttttcaagtcaaagtcataactaaaatttagtattgtcgtacgtatcttaaaatatcagatgaaatgattatatttttttaaaaatataaaaatttgaatgacgttaaaattatgatcatatttcaatatcatttcaaattatagtcttgaatttctatataactttcacataaggaacgtaatgaatgcatagctatatatattatattaaaaatgtgatttttttaacagtttagacttttaaacgtagaacgtatttatctgtttgacagatatcatggaaaagggagaagatttgtgcttgaaaaaggcagagacatagccttagtgaacaaagcatgtgattttttgaaagatcattattgtgttcctcctaattggagacaagatgaaaataaaggtatgattagagacaaagatggacgttgggttcaacctgaacgtcctagacttgatgatcatactcatgatattcatcatcatatcaaacatttaggactttaatcttgtacattattaatatgtgttactatgtaatcttgtatggaatataatataatgtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="+" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="6583" stop="7863"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6883" g_stop="7565" g_length="683"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="676" r_length="676" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="+" ref_id="SGN-E379020" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379020" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6883" e_stop="7565"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGAAAACTCTAATTCCAACAACAATTTTTTGAAATTCTATTGAATTTTTGTGAGTGGTAGCTTTAATTGGTAAAAATAATTAGTGCGATTATTTTTGACATTGTGAGCTTTTCAAGTCAAAGTCATAACTAAAATTTAGTATTGTCGTACGTATCTTAAAATATCAGATGAAATGATTATATTTTTTTAAAAATATAAAAATTTGAGTGACGTGAAAATTATGATCATATTTCAATATCATTTCAAATTATAGTCTTGAATTTCTATATAACTTTCACGTAAGGAACGTAATGAATGCATAGCTATATATATTATATTGAAAATGTGATTTTTTTAACAGTTTAGACTTTGAAACATAGAATGTATTTATCTGTTAGACAGATATCATGGAAAAGGGAGAAGATTTGTGCTTGAAAAAGGCATAGACATACCCTTAGTGAACAAAAGCATGTGATTTTTTGAAAGAACATTATTGTGTTCCTCCTTTTTTGGAGACATGAAGGAAAAAAGGTGTATGATTTAGAGACTATGATGGTTGTGGGGTACACCCTGATCTTCCTACACTTGATGAACATATTCGAGATATTTCTTCATCTAATCGAAAATTAAAGACGTCCCTCTTGTAACATAAAAATATGTGTTACTATGAAAATCTTGGTATGAAAAAAAAAAAAGGGTTAT</genome_strand>
        <mrna_strand>TGTGAAAACTCTAATTCCAACAACAATTTTTTGAAATTCTATTGAATTTTTGTGAGTGGTAGCTTTAATTGGTAAAAATAATTAGTGCGATTATTTTTGACATTGTGAGCTTTTCAAGTCAAAGTCATAACTAAAATTTAGTATTGTCGTACGTATCTTAAAATATCAGATGAAATGATTATATTTTTTTAAAAATATAAAAATTTGAATGACGTTAAAATTATGATCATATTTCAATATCATTTCAAATTATAGTCTTGAATTTCTATATAACTTTCACATAAGGAACGTAATGAATGCATAGCTATATATATTATATTAAAAATGTGATTTTTTTAACAGTTTAGACTTTTAAACGTAGAACGTATTTATCTGTTTGACAGATATCATGGAAAAGGGAGAAGATTTGTGCTTGAAAAAGGCAGAGACATAGCCTTAGTGAAC-AAAGCATGTGATTTTTTGAAAGATCATTATTGTGTTCCTCC-TAATTGGAGACAAGATGAAAATAAAG-GTATGA-TTAGAGACAAAGATGGACGTTGGGTTCAACCTGAACGTCCTAGACTTGATGATCATACTCATGATA-TTCATCATCATATCAAACATTTAGGACTTTAATCTTGTACATTATTAATATGTGTTACTATG-TAATCTT-GTATGGAATATAATATAATGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E370879" ref_strand="+" ref_description="SGN-E370879 [TUS-27-P11](-)">
      <seq>agggatttgcggttgcagtcaaagcagggttgaccaaggcggacttcgataccactgtgggtattcaccctacagcagcagaggagtttgtcaccatgcgaaccccaacaaggaagattcgaagcagtccatctgagggtaaggcagagcacgactctaaagctgctgcaagagtttgatatgcggcgataaaggctcaatttgttaagtgacacagagaacacgagtacaatttgaaagaggttttagactgatgagagcttatggaacatcagtatggagttacaacgagcaaaaaactttctaagacaatgagtcactaatacttcttggaacaaatgctaacttcactacttaaaaaggtctctcaaggtggttgcgatgatggtatatgcatttatccattggcttgcatcttgtcaacagtgtttcctttgatcaaagtaattgaggttaaacattctgtccagattttatttaggggagtccagaggattgctgactaatatcttgatgatgcttttctccgttattctacttttctgctgggtttgagggcgcatttgggcggtgtaattataacattgcttattaagtattgtttttgtaattataaaattagttgatatgctgcaataatagcagttaagcggattgcttaatggcttttatatattggaaatgttcattttcctaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="17015" stop="13479"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16715" g_stop="16579" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16578" i_stop="15776" i_length="803">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15775" g_stop="15687" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="226" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15686" i_stop="14252" i_length="1435">
            <donor d_prob="0.010" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14251" g_stop="13774" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="704" r_length="478" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E370879" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370879" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16715" e_stop="16579"/>
          <exon e_start="15775" e_stop="15687"/>
          <exon e_start="14251" e_stop="13774"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGATTTGCGGTTGCAGTCAAAGCAGGGTTGACCAAGGCGGACTTCGATACCACTGTGGGTATTCACCCTACAGCAGCAGAGGAGTTTGTCACCATGCGAACCCCAACAAGGAAGATTCGAAGCAGTCCATCTGAGGTTTGTCATTTACCTGATTCTTGTGCTTTCCTCCTTGTAATTCTTTTGTTATAGTATTTGTGAAGAAATTGTTAGGATTATTAGAAAAAGATCGAGTCACATGACGATGAACATGAAAATCTAAATCAATTGACTTTGACTTCCCCTTGCCTTTGTTCGAATTCCCAGTTCGACCTATTTTTGTATATAACTTATAACTTCAGTTCTTCAAAGGGAGAGTGAAACCTTAGAGTTCAATGGACATAACTCCGATCTCTTGATTTTTTCTGAAATATGACTTGCCCCTTTATTCATCAAAAACCTCTTTAATAGGAGTCTTATTACATCAATAGGAAGTCAATTCTTATGAAAGTAGGAAATCTAAATCCTATTCCAAACTAATATATATAGCTTAACTTAATACTTATGAAGCTATGAAACATAAATCCTCTTCTAGAATAATAAATAAAGCTACTAAAAATATAACTAAATACTTATTTAATGGCTTTCAACGCATGCACAACAGAACCACTTTAACTTCAACATCTCTCTCACTCTTAGTGAAACTGAAGTCTGAAATCGCATAATGTATCAACCAGTGTGCTCATTATTAGGACTGTTCCTCCATTGAACTGAATATCCCTTTAATGAAGCAAATGATCAACTTTCAGCTTTTTCCCTCTTCTTCTTCCAATAAATAAGATTGGTCTTTGAAAAAATTACTTCATACTCTGTGGAAACTTTAATAGATTTTTGATGTCTTAATTTTGTGTCATGCTCTTTTCTGCTACTGAATAGACTATGCATTTTGTCTTTTTTAACAGGGTAAGGCAGAGCACGACTCTAAAGCTGCTGCAAGAGTTTGATATGCGGCGATAAAGGCTCAATTTGTTAAGTGACACAGAGAACACGAGTAAGAAAGGGTTCCTTCTGTAATTCACAAAAAGGAGGCTGTTTGTAATTTTACATATGCCTTGTCTCATATCGTGTTGTCTTCTTAGGCGCTTCTTATTTATGCCACTTAGATTATCACCGTTAGCCACTGCCTCTTGTTGCCATGCGTCATGTGAATTAAGGTTGAGTGCAATTACAACTACCTCTGTCTTTTCACATTAAGGAGGAAAACGGAGACCACTACATGATGATGGTAGTTTGTATTTACTTTGCTGCCAACATTATACTCTCTCAGTTGTGAAGTTTGAACTGAGATCACAATTTAGAAATTTTAGTTTTGTGATTAATATTCATTGTGGCCAATAAAACATCCAATAACATAAATCCTGATAGAAGTGCTAGATCTCTCAGATCATTGCATATGCTGCAATAAGCACTTATGGAACTGACATATTGAACATGACTGAAAATCCTTAATCAGATCCAATATGATGCAAATTCATTGACATTGCCCTACACGGTATGATTTGTTTAATTGTGCATAATCAAATAAAAGACTTCAAGTTTCTAATGAATAACAGATATGCATGTGCAGAGCTAAAAAGCTCAAGATGTTTGAAGCGCCTATGGTAATTTGCCAGTTTGTAGTGTTTGCAATCAGGGATAATGATTTTATGAGGATATGGATGCGAAGTTCAGAGGGTGGATGTGGGATATTGTAACTGCACAACTCTTTTATGATGCATCTAATTAAGTGTTCAATTTTTGGTTTCTTATTTTATTCTCTTACAACTGAGGTGATTGTTGGTGTCCAAAATGATTACTGCTCCTTCGGCTCCAGTTTATGCGACACTGTGTCCTTATTATTCTGTTTAAAAATGAGTGACACGATTCTATATTTGGAAGCATGAACTTACTTTTTTGCTCTTAATTTGAACTTTGAAGCTTTTATTGCCATACTATGACCATGTTTTAGATCACTAGTTTCAAAGTCTTATATAGTCACACAAAATGTCATGGCTTGTTTAAGACCTCAAGTTTCAAGTTTTTTAAAAAAAAACTCCATGCCGAGTCAAACTATGTCACATAAATTGGAATGAAGTACATCTTTCCAATTTTTGTACAACCTCAGGAATTAGACTCGCAACTTGATTGCACTCATTGTCATTTAGCTGTAGCAAGAGTTCTGTTTTAGAATTTCCTTATATGTTCAACTGGCTTTGTAACATATATGAGATGGATTACATGGTCTCCTAAAGTTTGAAATGCTCAATATATTGACGGTTGATATCACTTTAATGAAAAAAATGGTACCTTTAAACCCTGTATGTGAAGATTGGATATTCCACCCCCTCAATCAATTCAATATGTAGTATCTTTTCTTTAACCAGTATGTATGTTGTCCATTTATCAAATGCACAACTGTTTATATTGTACGGACATTACATTTGCAGGTACAATTTGAAAGAGGTTTTAGACTGATGAGAGCTTATGGAACATCAGTATGGAGTTACAACGAGCAAAAAACTTTCTAAGACAATGAGTCACTAATACTTCTTGGAACAAATGCTAACTTCACTACTTAAAAAGGTCTCTCAAGGTGGTTGCGATGATGGTATATGCATTTATCCATTGGCTTGCATCTTGTCAACAGTGTTTCCTTTGATCAAAGTAATTGAGGTTAAACATTCTGTCCAGATTTTATTTAGGGGAGTCCAGAGGATTGCTGACTAATATCTTGATGATGCTTTTCTCCGTTATTCTACTTTTCTGCTGGGTTTGAGGGCGCATTTGGGCGGTGTAATTATAACATTGCTTATTAAGTATTGTTTTTGTAATTATAAAATTAGTTGATATGCTGCAATAATAGCAGTTAAGCGGATTGCTTAATGGCTTTTATATATTGGAAATGTTCATTTTCCTAAAACTACT</genome_strand>
        <mrna_strand>AGGGATTTGCGGTTGCAGTCAAAGCAGGGTTGACCAAGGCGGACTTCGATACCACTGTGGGTATTCACCCTACAGCAGCAGAGGAGTTTGTCACCATGCGAACCCCAACAAGGAAGATTCGAAGCAGTCCATCTGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAAGGCAGAGCACGACTCTAAAGCTGCTGCAAGAGTTTGATATGCGGCGATAAAGGCTCAATTTGTTAAGTGACACAGAGAACACGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAATTTGAAAGAGGTTTTAGACTGATGAGAGCTTATGGAACATCAGTATGGAGTTACAACGAGCAAAAAACTTTCTAAGACAATGAGTCACTAATACTTCTTGGAACAAATGCTAACTTCACTACTTAAAAAGGTCTCTCAAGGTGGTTGCGATGATGGTATATGCATTTATCCATTGGCTTGCATCTTGTCAACAGTGTTTCCTTTGATCAAAGTAATTGAGGTTAAACATTCTGTCCAGATTTTATTTAGGGGAGTCCAGAGGATTGCTGACTAATATCTTGATGATGCTTTTCTCCGTTATTCTACTTTTCTGCTGGGTTTGAGGGCGCATTTGGGCGGTGTAATTATAACATTGCTTATTAAGTATTGTTTTTGTAATTATAAAATTAGTTGATATGCTGCAATAATAGCAGTTAAGCGGATTGCTTAATGGCTTTTATATATTGGAAATGTTCATTTTCCTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E290504" ref_strand="-" ref_description="SGN-E290504 [cLES-20-K11]">
      <seq>taaaggctcaatttgttaagtgacacagagaacacgagtacaatttgaaagaggttttagactgatgagagcttatggaacatcagtatggagttacaacgagcaaaaaactttctaagacaatgagtcactaatacttcttggaacaaatgctaacttcactacttaaaaaggtctctcaaggtggttgcgatgatggtatatgcatttatccattggcttgcatcttgtcaacagtgtttcctttgatcaaagtaattgaggttaaacattctgtccagattttatttaggggagtccagaggattgctgactaatatcttgatgatgcttttctccgttattctacttttctgctgggtttgagggcgcatttgggcggtgtaattataacattgcttattaagtattgtttttgtaattataaaattagttgatatgctgcaataatagcagttaagcggattgcttaatggcttttatatattggaaatgttcattttcctaaaaaaaaaaaaaaaaaaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="16023" stop="13479"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15723" g_stop="15687" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15686" i_stop="14252" i_length="1435">
            <donor d_prob="0.010" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14251" g_stop="13779" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="510" r_length="473" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="511" polyA_stop="529"/>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E290504" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290504" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="15723" e_stop="15687"/>
          <exon e_start="14251" e_stop="13779"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGGCTCAATTTGTTAAGTGACACAGAGAACACGAGTAAGAAAGGGTTCCTTCTGTAATTCACAAAAAGGAGGCTGTTTGTAATTTTACATATGCCTTGTCTCATATCGTGTTGTCTTCTTAGGCGCTTCTTATTTATGCCACTTAGATTATCACCGTTAGCCACTGCCTCTTGTTGCCATGCGTCATGTGAATTAAGGTTGAGTGCAATTACAACTACCTCTGTCTTTTCACATTAAGGAGGAAAACGGAGACCACTACATGATGATGGTAGTTTGTATTTACTTTGCTGCCAACATTATACTCTCTCAGTTGTGAAGTTTGAACTGAGATCACAATTTAGAAATTTTAGTTTTGTGATTAATATTCATTGTGGCCAATAAAACATCCAATAACATAAATCCTGATAGAAGTGCTAGATCTCTCAGATCATTGCATATGCTGCAATAAGCACTTATGGAACTGACATATTGAACATGACTGAAAATCCTTAATCAGATCCAATATGATGCAAATTCATTGACATTGCCCTACACGGTATGATTTGTTTAATTGTGCATAATCAAATAAAAGACTTCAAGTTTCTAATGAATAACAGATATGCATGTGCAGAGCTAAAAAGCTCAAGATGTTTGAAGCGCCTATGGTAATTTGCCAGTTTGTAGTGTTTGCAATCAGGGATAATGATTTTATGAGGATATGGATGCGAAGTTCAGAGGGTGGATGTGGGATATTGTAACTGCACAACTCTTTTATGATGCATCTAATTAAGTGTTCAATTTTTGGTTTCTTATTTTATTCTCTTACAACTGAGGTGATTGTTGGTGTCCAAAATGATTACTGCTCCTTCGGCTCCAGTTTATGCGACACTGTGTCCTTATTATTCTGTTTAAAAATGAGTGACACGATTCTATATTTGGAAGCATGAACTTACTTTTTTGCTCTTAATTTGAACTTTGAAGCTTTTATTGCCATACTATGACCATGTTTTAGATCACTAGTTTCAAAGTCTTATATAGTCACACAAAATGTCATGGCTTGTTTAAGACCTCAAGTTTCAAGTTTTTTAAAAAAAAACTCCATGCCGAGTCAAACTATGTCACATAAATTGGAATGAAGTACATCTTTCCAATTTTTGTACAACCTCAGGAATTAGACTCGCAACTTGATTGCACTCATTGTCATTTAGCTGTAGCAAGAGTTCTGTTTTAGAATTTCCTTATATGTTCAACTGGCTTTGTAACATATATGAGATGGATTACATGGTCTCCTAAAGTTTGAAATGCTCAATATATTGACGGTTGATATCACTTTAATGAAAAAAATGGTACCTTTAAACCCTGTATGTGAAGATTGGATATTCCACCCCCTCAATCAATTCAATATGTAGTATCTTTTCTTTAACCAGTATGTATGTTGTCCATTTATCAAATGCACAACTGTTTATATTGTACGGACATTACATTTGCAGGTACAATTTGAAAGAGGTTTTAGACTGATGAGAGCTTATGGAACATCAGTATGGAGTTACAACGAGCAAAAAACTTTCTAAGACAATGAGTCACTAATACTTCTTGGAACAAATGCTAACTTCACTACTTAAAAAGGTCTCTCAAGGTGGTTGCGATGATGGTATATGCATTTATCCATTGGCTTGCATCTTGTCAACAGTGTTTCCTTTGATCAAAGTAATTGAGGTTAAACATTCTGTCCAGATTTTATTTAGGGGAGTCCAGAGGATTGCTGACTAATATCTTGATGATGCTTTTCTCCGTTATTCTACTTTTCTGCTGGGTTTGAGGGCGCATTTGGGCGGTGTAATTATAACATTGCTTATTAAGTATTGTTTTTGTAATTATAAAATTAGTTGATATGCTGCAATAATAGCAGTTAAGCGGATTGCTTAATGGCTTTTATATATTGGAAATGTTCATTTTCCTAAAA</genome_strand>
        <mrna_strand>TAAAGGCTCAATTTGTTAAGTGACACAGAGAACACGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAATTTGAAAGAGGTTTTAGACTGATGAGAGCTTATGGAACATCAGTATGGAGTTACAACGAGCAAAAAACTTTCTAAGACAATGAGTCACTAATACTTCTTGGAACAAATGCTAACTTCACTACTTAAAAAGGTCTCTCAAGGTGGTTGCGATGATGGTATATGCATTTATCCATTGGCTTGCATCTTGTCAACAGTGTTTCCTTTGATCAAAGTAATTGAGGTTAAACATTCTGTCCAGATTTTATTTAGGGGAGTCCAGAGGATTGCTGACTAATATCTTGATGATGCTTTTCTCCGTTATTCTACTTTTCTGCTGGGTTTGAGGGCGCATTTGGGCGGTGTAATTATAACATTGCTTATTAAGTATTGTTTTTGTAATTATAAAATTAGTTGATATGCTGCAATAATAGCAGTTAAGCGGATTGCTTAATGGCTTTTATATATTGGAAATGTTCATTTTCCTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E394915" ref_strand="+" ref_description="SGN-E394915 [TUS-43-G19](-)">
      <seq>tacagggatttgcggttgcagtcaaagcagggttgaccaaggcggacttcgataccactgtgggtattcaccctacagcagcagaggagtttgtcaccatgcgaaccccaacaaggaagattcgaagcagtccatctgagggtaaggcagagcacgactctaaagctgctgcaagagtttgatatgcggcgataaaggctcaatttgttaagtgacacagagaacacgagtacaatttgaaagaggttttagactgatgagagcttatggaacatcagtatggagttacaacgagcaaaaaactttctaagacaatgagtcactaatacttcttggaacaaatgctaacttcactacttaaaaaggtctctcaaggtggttgcgatgatggtatatgcatttatccattggcttgcatcttgtcaacagtgtttcctttgatcaaagtaattgaggttaaacattctgtccagattttatttaggggagtccagaggattgctgactaatatcttgatgatgcttttctccgttattctacttttctgctgggtttgagggcgcatttgggcggtgtaattataacattgcttattaagtattgtttttgtaattataaaattagttgatatgctgcaataatagcagttaagcggattgcttaatggcttttataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="17018" stop="13503"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16807" g_stop="16803" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="5" r_length="5" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16802" i_stop="16714" i_length="89">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16713" g_stop="16579" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="140" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16578" i_stop="15776" i_length="803">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15775" g_stop="15687" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="229" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15686" i_stop="14252" i_length="1435">
            <donor d_prob="0.010" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14251" g_stop="13795" g_length="457"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="686" r_length="457" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E394915" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E394915" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16807" e_stop="16803"/>
          <exon e_start="16713" e_stop="16579"/>
          <exon e_start="15775" e_stop="15687"/>
          <exon e_start="14251" e_stop="13795"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAGGTTGGAGTTTCCGTTTAATTCTTTGGTGCATATTTCAGATTGTTCATAAAATATGCATGTAATGCTTTTTGTCATAATGAAACTTCCAGGGATTTGCGGTTGCAGTCAAAGCAGGGTTGACCAAGGCGGACTTCGATACCACTGTGGGTATTCACCCTACAGCAGCAGAGGAGTTTGTCACCATGCGAACCCCAACAAGGAAGATTCGAAGCAGTCCATCTGAGGTTTGTCATTTACCTGATTCTTGTGCTTTCCTCCTTGTAATTCTTTTGTTATAGTATTTGTGAAGAAATTGTTAGGATTATTAGAAAAAGATCGAGTCACATGACGATGAACATGAAAATCTAAATCAATTGACTTTGACTTCCCCTTGCCTTTGTTCGAATTCCCAGTTCGACCTATTTTTGTATATAACTTATAACTTCAGTTCTTCAAAGGGAGAGTGAAACCTTAGAGTTCAATGGACATAACTCCGATCTCTTGATTTTTTCTGAAATATGACTTGCCCCTTTATTCATCAAAAACCTCTTTAATAGGAGTCTTATTACATCAATAGGAAGTCAATTCTTATGAAAGTAGGAAATCTAAATCCTATTCCAAACTAATATATATAGCTTAACTTAATACTTATGAAGCTATGAAACATAAATCCTCTTCTAGAATAATAAATAAAGCTACTAAAAATATAACTAAATACTTATTTAATGGCTTTCAACGCATGCACAACAGAACCACTTTAACTTCAACATCTCTCTCACTCTTAGTGAAACTGAAGTCTGAAATCGCATAATGTATCAACCAGTGTGCTCATTATTAGGACTGTTCCTCCATTGAACTGAATATCCCTTTAATGAAGCAAATGATCAACTTTCAGCTTTTTCCCTCTTCTTCTTCCAATAAATAAGATTGGTCTTTGAAAAAATTACTTCATACTCTGTGGAAACTTTAATAGATTTTTGATGTCTTAATTTTGTGTCATGCTCTTTTCTGCTACTGAATAGACTATGCATTTTGTCTTTTTTAACAGGGTAAGGCAGAGCACGACTCTAAAGCTGCTGCAAGAGTTTGATATGCGGCGATAAAGGCTCAATTTGTTAAGTGACACAGAGAACACGAGTAAGAAAGGGTTCCTTCTGTAATTCACAAAAAGGAGGCTGTTTGTAATTTTACATATGCCTTGTCTCATATCGTGTTGTCTTCTTAGGCGCTTCTTATTTATGCCACTTAGATTATCACCGTTAGCCACTGCCTCTTGTTGCCATGCGTCATGTGAATTAAGGTTGAGTGCAATTACAACTACCTCTGTCTTTTCACATTAAGGAGGAAAACGGAGACCACTACATGATGATGGTAGTTTGTATTTACTTTGCTGCCAACATTATACTCTCTCAGTTGTGAAGTTTGAACTGAGATCACAATTTAGAAATTTTAGTTTTGTGATTAATATTCATTGTGGCCAATAAAACATCCAATAACATAAATCCTGATAGAAGTGCTAGATCTCTCAGATCATTGCATATGCTGCAATAAGCACTTATGGAACTGACATATTGAACATGACTGAAAATCCTTAATCAGATCCAATATGATGCAAATTCATTGACATTGCCCTACACGGTATGATTTGTTTAATTGTGCATAATCAAATAAAAGACTTCAAGTTTCTAATGAATAACAGATATGCATGTGCAGAGCTAAAAAGCTCAAGATGTTTGAAGCGCCTATGGTAATTTGCCAGTTTGTAGTGTTTGCAATCAGGGATAATGATTTTATGAGGATATGGATGCGAAGTTCAGAGGGTGGATGTGGGATATTGTAACTGCACAACTCTTTTATGATGCATCTAATTAAGTGTTCAATTTTTGGTTTCTTATTTTATTCTCTTACAACTGAGGTGATTGTTGGTGTCCAAAATGATTACTGCTCCTTCGGCTCCAGTTTATGCGACACTGTGTCCTTATTATTCTGTTTAAAAATGAGTGACACGATTCTATATTTGGAAGCATGAACTTACTTTTTTGCTCTTAATTTGAACTTTGAAGCTTTTATTGCCATACTATGACCATGTTTTAGATCACTAGTTTCAAAGTCTTATATAGTCACACAAAATGTCATGGCTTGTTTAAGACCTCAAGTTTCAAGTTTTTTAAAAAAAAACTCCATGCCGAGTCAAACTATGTCACATAAATTGGAATGAAGTACATCTTTCCAATTTTTGTACAACCTCAGGAATTAGACTCGCAACTTGATTGCACTCATTGTCATTTAGCTGTAGCAAGAGTTCTGTTTTAGAATTTCCTTATATGTTCAACTGGCTTTGTAACATATATGAGATGGATTACATGGTCTCCTAAAGTTTGAAATGCTCAATATATTGACGGTTGATATCACTTTAATGAAAAAAATGGTACCTTTAAACCCTGTATGTGAAGATTGGATATTCCACCCCCTCAATCAATTCAATATGTAGTATCTTTTCTTTAACCAGTATGTATGTTGTCCATTTATCAAATGCACAACTGTTTATATTGTACGGACATTACATTTGCAGGTACAATTTGAAAGAGGTTTTAGACTGATGAGAGCTTATGGAACATCAGTATGGAGTTACAACGAGCAAAAAACTTTCTAAGACAATGAGTCACTAATACTTCTTGGAACAAATGCTAACTTCACTACTTAAAAAGGTCTCTCAAGGTGGTTGCGATGATGGTATATGCATTTATCCATTGGCTTGCATCTTGTCAACAGTGTTTCCTTTGATCAAAGTAATTGAGGTTAAACATTCTGTCCAGATTTTATTTAGGGGAGTCCAGAGGATTGCTGACTAATATCTTGATGATGCTTTTCTCCGTTATTCTACTTTTCTGCTGGGTTTGAGGGCGCATTTGGGCGGTGTAATTATAACATTGCTTATTAAGTATTGTTTTTGTAATTATAAAATTAGTTGATATGCTGCAATAATAGCAGTTAAGCGGATTGCTTAATGGCTTTTATATATTGGAAAT</genome_strand>
        <mrna_strand>TACAG.........................................................................................GGATTTGCGGTTGCAGTCAAAGCAGGGTTGACCAAGGCGGACTTCGATACCACTGTGGGTATTCACCCTACAGCAGCAGAGGAGTTTGTCACCATGCGAACCCCAACAAGGAAGATTCGAAGCAGTCCATCTGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAAGGCAGAGCACGACTCTAAAGCTGCTGCAAGAGTTTGATATGCGGCGATAAAGGCTCAATTTGTTAAGTGACACAGAGAACACGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAATTTGAAAGAGGTTTTAGACTGATGAGAGCTTATGGAACATCAGTATGGAGTTACAACGAGCAAAAAACTTTCTAAGACAATGAGTCACTAATACTTCTTGGAACAAATGCTAACTTCACTACTTAAAAAGGTCTCTCAAGGTGGTTGCGATGATGGTATATGCATTTATCCATTGGCTTGCATCTTGTCAACAGTGTTTCCTTTGATCAAAGTAATTGAGGTTAAACATTCTGTCCAGATTTTATTTAGGGGAGTCCAGAGGATTGCTGACTAATATCTTGATGATGCTTTTCTCCGTTATTCTACTTTTCTGCTGGGTTTGAGGGCGCATTTGGGCGGTGTAATTATAACATTGCTTATTAAGTATTGTTTTTGTAATTATAAAATTAGTTGATATGCTGCAATAATAGCAGTTAAGCGGATTGCTTAATGGCTTTTATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E690464" ref_strand="-" ref_description="SGN-E690464 [LH_Ea03J06]">
      <seq>tccagatcgggttttcatgaaattggtagtatgtgcgaagtctagcaaagttctgggcttgcacatgtgtggagacgatgcaccagaaattgtacagggatttgcggttgcagtcaaagcagggttgaccaaggcggacttcgataccactgtgggtattcaccctacagcagcagaggagtttgtcaccatgcgaaccccaacaaggaagattcgaagcagtccatctgagggtaaggcagagcacgactctaaagctgctgcaagagtttgatatgcggcgataaaggctcaatttgttaagtgacacagagaacacgagtacaatttgaaagaggttttagactgatgggagcttatggaacatcagtatggagttacaacaagcaaaaacctttctaagacactgagtcactaatacttctcggaacaaatgctaacttcactacttaaaaaggtctctcaaggtggttgtgatgatggtatatgcatttatccattggcttgcatcttgtcaacagtatttcctttgatcaaagtaattgaggttaaacattctgtccagattttatttaggggagtccagaggattgctgcctaatatcttgatgatgcttttctccgttattctacttttcgcctgggtttgagggcacatttgggcggtgtaattataacattgattattaagtattgtttttgtaattataaaattagttgatatgcagcaataatagcagttaagcgcctcgtgccgaattcggcacgagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="17199" stop="13521"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16899" g_stop="16803" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16802" i_stop="16714" i_length="89">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16713" g_stop="16579" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="232" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16578" i_stop="15776" i_length="803">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15775" g_stop="15687" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="321" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15686" i_stop="14252" i_length="1435">
            <donor d_prob="0.010" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14251" g_stop="13825" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="748" r_length="427" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E690464" ref_strand="-">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>748</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E690464" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="16899" e_stop="16803"/>
          <exon e_start="16713" e_stop="16579"/>
          <exon e_start="15775" e_stop="15687"/>
          <exon e_start="14251" e_stop="13825"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAGATCGGGTTTTCATGAAATTGGTAGTATGTGCGAAGTCTAGCAAAGTTCTGGGCTTGCACATGTGTGGAGACGATGCACCAGAAATTGTACAGGTTGGAGTTTCCGTTTAATTCTTTGGTGCATATTTCAGATTGTTCATAAAATATGCATGTAATGCTTTTTGTCATAATGAAACTTCCAGGGATTTGCGGTTGCAGTCAAAGCAGGGTTGACCAAGGCGGACTTCGATACCACTGTGGGTATTCACCCTACAGCAGCAGAGGAGTTTGTCACCATGCGAACCCCAACAAGGAAGATTCGAAGCAGTCCATCTGAGGTTTGTCATTTACCTGATTCTTGTGCTTTCCTCCTTGTAATTCTTTTGTTATAGTATTTGTGAAGAAATTGTTAGGATTATTAGAAAAAGATCGAGTCACATGACGATGAACATGAAAATCTAAATCAATTGACTTTGACTTCCCCTTGCCTTTGTTCGAATTCCCAGTTCGACCTATTTTTGTATATAACTTATAACTTCAGTTCTTCAAAGGGAGAGTGAAACCTTAGAGTTCAATGGACATAACTCCGATCTCTTGATTTTTTCTGAAATATGACTTGCCCCTTTATTCATCAAAAACCTCTTTAATAGGAGTCTTATTACATCAATAGGAAGTCAATTCTTATGAAAGTAGGAAATCTAAATCCTATTCCAAACTAATATATATAGCTTAACTTAATACTTATGAAGCTATGAAACATAAATCCTCTTCTAGAATAATAAATAAAGCTACTAAAAATATAACTAAATACTTATTTAATGGCTTTCAACGCATGCACAACAGAACCACTTTAACTTCAACATCTCTCTCACTCTTAGTGAAACTGAAGTCTGAAATCGCATAATGTATCAACCAGTGTGCTCATTATTAGGACTGTTCCTCCATTGAACTGAATATCCCTTTAATGAAGCAAATGATCAACTTTCAGCTTTTTCCCTCTTCTTCTTCCAATAAATAAGATTGGTCTTTGAAAAAATTACTTCATACTCTGTGGAAACTTTAATAGATTTTTGATGTCTTAATTTTGTGTCATGCTCTTTTCTGCTACTGAATAGACTATGCATTTTGTCTTTTTTAACAGGGTAAGGCAGAGCACGACTCTAAAGCTGCTGCAAGAGTTTGATATGCGGCGATAAAGGCTCAATTTGTTAAGTGACACAGAGAACACGAGTAAGAAAGGGTTCCTTCTGTAATTCACAAAAAGGAGGCTGTTTGTAATTTTACATATGCCTTGTCTCATATCGTGTTGTCTTCTTAGGCGCTTCTTATTTATGCCACTTAGATTATCACCGTTAGCCACTGCCTCTTGTTGCCATGCGTCATGTGAATTAAGGTTGAGTGCAATTACAACTACCTCTGTCTTTTCACATTAAGGAGGAAAACGGAGACCACTACATGATGATGGTAGTTTGTATTTACTTTGCTGCCAACATTATACTCTCTCAGTTGTGAAGTTTGAACTGAGATCACAATTTAGAAATTTTAGTTTTGTGATTAATATTCATTGTGGCCAATAAAACATCCAATAACATAAATCCTGATAGAAGTGCTAGATCTCTCAGATCATTGCATATGCTGCAATAAGCACTTATGGAACTGACATATTGAACATGACTGAAAATCCTTAATCAGATCCAATATGATGCAAATTCATTGACATTGCCCTACACGGTATGATTTGTTTAATTGTGCATAATCAAATAAAAGACTTCAAGTTTCTAATGAATAACAGATATGCATGTGCAGAGCTAAAAAGCTCAAGATGTTTGAAGCGCCTATGGTAATTTGCCAGTTTGTAGTGTTTGCAATCAGGGATAATGATTTTATGAGGATATGGATGCGAAGTTCAGAGGGTGGATGTGGGATATTGTAACTGCACAACTCTTTTATGATGCATCTAATTAAGTGTTCAATTTTTGGTTTCTTATTTTATTCTCTTACAACTGAGGTGATTGTTGGTGTCCAAAATGATTACTGCTCCTTCGGCTCCAGTTTATGCGACACTGTGTCCTTATTATTCTGTTTAAAAATGAGTGACACGATTCTATATTTGGAAGCATGAACTTACTTTTTTGCTCTTAATTTGAACTTTGAAGCTTTTATTGCCATACTATGACCATGTTTTAGATCACTAGTTTCAAAGTCTTATATAGTCACACAAAATGTCATGGCTTGTTTAAGACCTCAAGTTTCAAGTTTTTTAAAAAAAAACTCCATGCCGAGTCAAACTATGTCACATAAATTGGAATGAAGTACATCTTTCCAATTTTTGTACAACCTCAGGAATTAGACTCGCAACTTGATTGCACTCATTGTCATTTAGCTGTAGCAAGAGTTCTGTTTTAGAATTTCCTTATATGTTCAACTGGCTTTGTAACATATATGAGATGGATTACATGGTCTCCTAAAGTTTGAAATGCTCAATATATTGACGGTTGATATCACTTTAATGAAAAAAATGGTACCTTTAAACCCTGTATGTGAAGATTGGATATTCCACCCCCTCAATCAATTCAATATGTAGTATCTTTTCTTTAACCAGTATGTATGTTGTCCATTTATCAAATGCACAACTGTTTATATTGTACGGACATTACATTTGCAGGTACAATTTGAAAGAGGTTTTAGACTGATGAGAGCTTATGGAACATCAGTATGGAGTTACAACGAGCAAAAAACTTTCTAAGACAATGAGTCACTAATACTTCTTGGAACAAATGCTAACTTCACTACTTAAAAAGGTCTCTCAAGGTGGTTGCGATGATGGTATATGCATTTATCCATTGGCTTGCATCTTGTCAACAGTGTTTCCTTTGATCAAAGTAATTGAGGTTAAACATTCTGTCCAGATTTTATTTAGGGGAGTCCAGAGGATTGCTGACTAATATCTTGATGATGCTTTTCTCCGTTATTCTACTTTTCTGCTGGGTTTGAGGGCGCATTTGGGCGGTGTAATTATAACATTGCTTATTAAGTATTGTTTTTGTAATTATAAAATTAGTTGATATGCTGCAATAATAGCAGTTAAGCGG</genome_strand>
        <mrna_strand>TCCAGATCGGGTTTTCATGAAATTGGTAGTATGTGCGAAGTCTAGCAAAGTTCTGGGCTTGCACATGTGTGGAGACGATGCACCAGAAATTGTACAG.........................................................................................GGATTTGCGGTTGCAGTCAAAGCAGGGTTGACCAAGGCGGACTTCGATACCACTGTGGGTATTCACCCTACAGCAGCAGAGGAGTTTGTCACCATGCGAACCCCAACAAGGAAGATTCGAAGCAGTCCATCTGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAAGGCAGAGCACGACTCTAAAGCTGCTGCAAGAGTTTGATATGCGGCGATAAAGGCTCAATTTGTTAAGTGACACAGAGAACACGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAATTTGAAAGAGGTTTTAGACTGATGGGAGCTTATGGAACATCAGTATGGAGTTACAACAAGCAAAAACCTTTCTAAGACACTGAGTCACTAATACTTCTCGGAACAAATGCTAACTTCACTACTTAAAAAGGTCTCTCAAGGTGGTTGTGATGATGGTATATGCATTTATCCATTGGCTTGCATCTTGTCAACAGTATTTCCTTTGATCAAAGTAATTGAGGTTAAACATTCTGTCCAGATTTTATTTAGGGGAGTCCAGAGGATTGCTGCCTAATATCTTGATGATGCTTTTCTCCGTTATTCTACTTTTCGCCTGGGTTTGAGGGCACATTTGGGCGGTGTAATTATAACATTGATTATTAAGTATTGTTTTTGTAATTATAAAATTAGTTGATATGCAGCAATAATAGCAGTTAAGCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E379194" ref_strand="+" ref_description="SGN-E379194 [TUS-1-G24](-)">
      <seq>agcagcagaggagtttgtcaccatgcgagccccagcaaggaagattcgaagcagtccatctgagggtaaggcagagcacgactgtaaagctgctgcaagagtttgatatgcggcgataaaggctcaatttgttaagtgacacagagaacacgagtacaatttgaaagaggttctagactgatgagagcttatggaacatcagtatggagttacaacgagcaaaaaactttataagacaatgagtcactaatacttcttggaacaaatgctaacttcactacttaaaaaggtctctcaaggtggtcgcgatgatggtatatgcatttatccattggcttgcatcttgtcaacagtgtttcctttgatcaaagtaattgaggttaaacattctgtccagattttatttaggggagtccagaggattgctgactaatatcttgatgatgcttttctccgttattctactatttctgctgggtttgagggcgcatttgggcggtgtaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="16942" stop="13600"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16642" g_stop="16579" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16578" i_stop="15776" i_length="803">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15775" g_stop="15687" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="153" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15686" i_stop="14252" i_length="1435">
            <donor d_prob="0.010" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14251" g_stop="13900" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="506" r_length="353" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E379194" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379194" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16642" e_stop="16579"/>
          <exon e_start="15775" e_stop="15687"/>
          <exon e_start="14251" e_stop="13900"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAGCAGAGGAGTTTGTCACCATGCGAACCCCAACAAGGAAGATTCGAAGCAGTCCATCTGAGGTTTGTCATTTACCTGATTCTTGTGCTTTCCTCCTTGTAATTCTTTTGTTATAGTATTTGTGAAGAAATTGTTAGGATTATTAGAAAAAGATCGAGTCACATGACGATGAACATGAAAATCTAAATCAATTGACTTTGACTTCCCCTTGCCTTTGTTCGAATTCCCAGTTCGACCTATTTTTGTATATAACTTATAACTTCAGTTCTTCAAAGGGAGAGTGAAACCTTAGAGTTCAATGGACATAACTCCGATCTCTTGATTTTTTCTGAAATATGACTTGCCCCTTTATTCATCAAAAACCTCTTTAATAGGAGTCTTATTACATCAATAGGAAGTCAATTCTTATGAAAGTAGGAAATCTAAATCCTATTCCAAACTAATATATATAGCTTAACTTAATACTTATGAAGCTATGAAACATAAATCCTCTTCTAGAATAATAAATAAAGCTACTAAAAATATAACTAAATACTTATTTAATGGCTTTCAACGCATGCACAACAGAACCACTTTAACTTCAACATCTCTCTCACTCTTAGTGAAACTGAAGTCTGAAATCGCATAATGTATCAACCAGTGTGCTCATTATTAGGACTGTTCCTCCATTGAACTGAATATCCCTTTAATGAAGCAAATGATCAACTTTCAGCTTTTTCCCTCTTCTTCTTCCAATAAATAAGATTGGTCTTTGAAAAAATTACTTCATACTCTGTGGAAACTTTAATAGATTTTTGATGTCTTAATTTTGTGTCATGCTCTTTTCTGCTACTGAATAGACTATGCATTTTGTCTTTTTTAACAGGGTAAGGCAGAGCACGACTCTAAAGCTGCTGCAAGAGTTTGATATGCGGCGATAAAGGCTCAATTTGTTAAGTGACACAGAGAACACGAGTAAGAAAGGGTTCCTTCTGTAATTCACAAAAAGGAGGCTGTTTGTAATTTTACATATGCCTTGTCTCATATCGTGTTGTCTTCTTAGGCGCTTCTTATTTATGCCACTTAGATTATCACCGTTAGCCACTGCCTCTTGTTGCCATGCGTCATGTGAATTAAGGTTGAGTGCAATTACAACTACCTCTGTCTTTTCACATTAAGGAGGAAAACGGAGACCACTACATGATGATGGTAGTTTGTATTTACTTTGCTGCCAACATTATACTCTCTCAGTTGTGAAGTTTGAACTGAGATCACAATTTAGAAATTTTAGTTTTGTGATTAATATTCATTGTGGCCAATAAAACATCCAATAACATAAATCCTGATAGAAGTGCTAGATCTCTCAGATCATTGCATATGCTGCAATAAGCACTTATGGAACTGACATATTGAACATGACTGAAAATCCTTAATCAGATCCAATATGATGCAAATTCATTGACATTGCCCTACACGGTATGATTTGTTTAATTGTGCATAATCAAATAAAAGACTTCAAGTTTCTAATGAATAACAGATATGCATGTGCAGAGCTAAAAAGCTCAAGATGTTTGAAGCGCCTATGGTAATTTGCCAGTTTGTAGTGTTTGCAATCAGGGATAATGATTTTATGAGGATATGGATGCGAAGTTCAGAGGGTGGATGTGGGATATTGTAACTGCACAACTCTTTTATGATGCATCTAATTAAGTGTTCAATTTTTGGTTTCTTATTTTATTCTCTTACAACTGAGGTGATTGTTGGTGTCCAAAATGATTACTGCTCCTTCGGCTCCAGTTTATGCGACACTGTGTCCTTATTATTCTGTTTAAAAATGAGTGACACGATTCTATATTTGGAAGCATGAACTTACTTTTTTGCTCTTAATTTGAACTTTGAAGCTTTTATTGCCATACTATGACCATGTTTTAGATCACTAGTTTCAAAGTCTTATATAGTCACACAAAATGTCATGGCTTGTTTAAGACCTCAAGTTTCAAGTTTTTTAAAAAAAAACTCCATGCCGAGTCAAACTATGTCACATAAATTGGAATGAAGTACATCTTTCCAATTTTTGTACAACCTCAGGAATTAGACTCGCAACTTGATTGCACTCATTGTCATTTAGCTGTAGCAAGAGTTCTGTTTTAGAATTTCCTTATATGTTCAACTGGCTTTGTAACATATATGAGATGGATTACATGGTCTCCTAAAGTTTGAAATGCTCAATATATTGACGGTTGATATCACTTTAATGAAAAAAATGGTACCTTTAAACCCTGTATGTGAAGATTGGATATTCCACCCCCTCAATCAATTCAATATGTAGTATCTTTTCTTTAACCAGTATGTATGTTGTCCATTTATCAAATGCACAACTGTTTATATTGTACGGACATTACATTTGCAGGTACAATTTGAAAGAGGTTTTAGACTGATGAGAGCTTATGGAACATCAGTATGGAGTTACAACGAGCAAAAAACTTTCTAAGACAATGAGTCACTAATACTTCTTGGAACAAATGCTAACTTCACTACTTAAAAAGGTCTCTCAAGGTGGTTGCGATGATGGTATATGCATTTATCCATTGGCTTGCATCTTGTCAACAGTGTTTCCTTTGATCAAAGTAATTGAGGTTAAACATTCTGTCCAGATTTTATTTAGGGGAGTCCAGAGGATTGCTGACTAATATCTTGATGATGCTTTTCTCCGTTATTCTACT-TTTCTGCTGGGTTTGAGGGCGCATTTGGGCGGTGTAATT</genome_strand>
        <mrna_strand>AGCAGCAGAGGAGTTTGTCACCATGCGAGCCCCAGCAAGGAAGATTCGAAGCAGTCCATCTGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAAGGCAGAGCACGACTGTAAAGCTGCTGCAAGAGTTTGATATGCGGCGATAAAGGCTCAATTTGTTAAGTGACACAGAGAACACGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAATTTGAAAGAGGTTCTAGACTGATGAGAGCTTATGGAACATCAGTATGGAGTTACAACGAGCAAAAAACTTTATAAGACAATGAGTCACTAATACTTCTTGGAACAAATGCTAACTTCACTACTTAAAAAGGTCTCTCAAGGTGGTCGCGATGATGGTATATGCATTTATCCATTGGCTTGCATCTTGTCAACAGTGTTTCCTTTGATCAAAGTAATTGAGGTTAAACATTCTGTCCAGATTTTATTTAGGGGAGTCCAGAGGATTGCTGACTAATATCTTGATGATGCTTTTCTCCGTTATTCTACTATTTCTGCTGGGTTTGAGGGCGCATTTGGGCGGTGTAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E731875" ref_strand="+" ref_description="SGN-E731875 [LA28BG03]">
      <seq>tggagatgttactgatagaattaatctaactccagttgctttgatggagggaggagcattggcaaaaactatttttgctggtgaacccacaaaacctgattataggaacgtaccatgtgcagtattttcccagccacctattggactagttggcctgacagaagaagaggccatcaaagaatatggtgatgttgatgtttatacagcaaattttagaccattaaaggccactctttctggtcttccagatcgggttttcatgaaattggtagtatgtgcgaagtctagcaaagttctgggcttgcacatgtgtggagacgatgcaccagaaattgtacagggatttgcggttgcagtcaaagcagggttgaccaaggcggacttcgataccactgtgggtattcaccctacagcagcagaggagtttgtcaccatgcgaaccccaacaaggaagattcgaagcagtccatctgagggtaaggcagagcacgactctaaagctgctgcaagagtttgatatgcggcgataaaggctcaatttgttaagtgacacagagaacacgagtacaatttgaaagaggttttagactgatgagagcttatggaacatcagtatggagttacaacgagcaaaaaactttctaagacaatgagtcactaatacttcttggaacaaatgctaacttcactacttaaaaaggtctctcaaggtggttgcgatgatggtatatgcatttatccattggcttgcatcttgtcaacagtgtttcctttgatcaaagtaattgaggttaaacattctgtccagattttatttangggagtccagaagattgctgactaatatcttgatgatgcttttctccgntattctacttttctgctgggtttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="17738" stop="13623"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17438" g_stop="17334" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17333" i_stop="17106" i_length="228">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.125" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17105" g_stop="17042" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="169" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17041" i_stop="16974" i_length="68">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16973" g_stop="16803" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="340" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16802" i_stop="16714" i_length="89">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16713" g_stop="16579" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="475" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16578" i_stop="15776" i_length="803">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15775" g_stop="15687" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="564" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15686" i_stop="14252" i_length="1435">
            <donor d_prob="0.010" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14251" g_stop="13923" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="893" r_length="329" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E731875" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>893</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731875" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17438" e_stop="17334"/>
          <exon e_start="17105" e_stop="17042"/>
          <exon e_start="16973" e_stop="16803"/>
          <exon e_start="16713" e_stop="16579"/>
          <exon e_start="15775" e_stop="15687"/>
          <exon e_start="14251" e_stop="13923"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGATGTTACTGATAGAATTAATCTAACTCCAGTTGCTTTGATGGAGGGAGGAGCATTGGCAAAAACTATTTTTGCTGGTGAACCCACAAAACCTGATTATAGGTACCTCTTCTTTCTTCTGTGAATTCATTTGATGACTTAAAAAGTTTGACAAGGACTGCCGAAGATGCACACTTCTCCAATTATTTTTTACTACAAATTGGTAATGTGCTTTGAGATCTGTGGTTCTACCATGTAAAATGCATAAGCTCTCACAGCTGAATTTTAATTTGTTTAAAAAGAAACATCTATAGCTGCTCCCTGATCTGAGTGTTCTGTTCTCCCAAATAGGAACGTACCATGTGCAGTATTTTCCCAGCCACCTATTGGACTAGTTGGCCTGACAGAAGAAGAGGTATAATAGCGAGAGTATGTGAATTGATAATTAATTATTATGATAAATGATTTGAATTGTTTTTACAGGCCATCAAAGAATATGGTGATGTTGATGTTTATACAGCAAATTTTAGACCATTAAAGGCCACTCTTTCTGGTCTTCCAGATCGGGTTTTCATGAAATTGGTAGTATGTGCGAAGTCTAGCAAAGTTCTGGGCTTGCACATGTGTGGAGACGATGCACCAGAAATTGTACAGGTTGGAGTTTCCGTTTAATTCTTTGGTGCATATTTCAGATTGTTCATAAAATATGCATGTAATGCTTTTTGTCATAATGAAACTTCCAGGGATTTGCGGTTGCAGTCAAAGCAGGGTTGACCAAGGCGGACTTCGATACCACTGTGGGTATTCACCCTACAGCAGCAGAGGAGTTTGTCACCATGCGAACCCCAACAAGGAAGATTCGAAGCAGTCCATCTGAGGTTTGTCATTTACCTGATTCTTGTGCTTTCCTCCTTGTAATTCTTTTGTTATAGTATTTGTGAAGAAATTGTTAGGATTATTAGAAAAAGATCGAGTCACATGACGATGAACATGAAAATCTAAATCAATTGACTTTGACTTCCCCTTGCCTTTGTTCGAATTCCCAGTTCGACCTATTTTTGTATATAACTTATAACTTCAGTTCTTCAAAGGGAGAGTGAAACCTTAGAGTTCAATGGACATAACTCCGATCTCTTGATTTTTTCTGAAATATGACTTGCCCCTTTATTCATCAAAAACCTCTTTAATAGGAGTCTTATTACATCAATAGGAAGTCAATTCTTATGAAAGTAGGAAATCTAAATCCTATTCCAAACTAATATATATAGCTTAACTTAATACTTATGAAGCTATGAAACATAAATCCTCTTCTAGAATAATAAATAAAGCTACTAAAAATATAACTAAATACTTATTTAATGGCTTTCAACGCATGCACAACAGAACCACTTTAACTTCAACATCTCTCTCACTCTTAGTGAAACTGAAGTCTGAAATCGCATAATGTATCAACCAGTGTGCTCATTATTAGGACTGTTCCTCCATTGAACTGAATATCCCTTTAATGAAGCAAATGATCAACTTTCAGCTTTTTCCCTCTTCTTCTTCCAATAAATAAGATTGGTCTTTGAAAAAATTACTTCATACTCTGTGGAAACTTTAATAGATTTTTGATGTCTTAATTTTGTGTCATGCTCTTTTCTGCTACTGAATAGACTATGCATTTTGTCTTTTTTAACAGGGTAAGGCAGAGCACGACTCTAAAGCTGCTGCAAGAGTTTGATATGCGGCGATAAAGGCTCAATTTGTTAAGTGACACAGAGAACACGAGTAAGAAAGGGTTCCTTCTGTAATTCACAAAAAGGAGGCTGTTTGTAATTTTACATATGCCTTGTCTCATATCGTGTTGTCTTCTTAGGCGCTTCTTATTTATGCCACTTAGATTATCACCGTTAGCCACTGCCTCTTGTTGCCATGCGTCATGTGAATTAAGGTTGAGTGCAATTACAACTACCTCTGTCTTTTCACATTAAGGAGGAAAACGGAGACCACTACATGATGATGGTAGTTTGTATTTACTTTGCTGCCAACATTATACTCTCTCAGTTGTGAAGTTTGAACTGAGATCACAATTTAGAAATTTTAGTTTTGTGATTAATATTCATTGTGGCCAATAAAACATCCAATAACATAAATCCTGATAGAAGTGCTAGATCTCTCAGATCATTGCATATGCTGCAATAAGCACTTATGGAACTGACATATTGAACATGACTGAAAATCCTTAATCAGATCCAATATGATGCAAATTCATTGACATTGCCCTACACGGTATGATTTGTTTAATTGTGCATAATCAAATAAAAGACTTCAAGTTTCTAATGAATAACAGATATGCATGTGCAGAGCTAAAAAGCTCAAGATGTTTGAAGCGCCTATGGTAATTTGCCAGTTTGTAGTGTTTGCAATCAGGGATAATGATTTTATGAGGATATGGATGCGAAGTTCAGAGGGTGGATGTGGGATATTGTAACTGCACAACTCTTTTATGATGCATCTAATTAAGTGTTCAATTTTTGGTTTCTTATTTTATTCTCTTACAACTGAGGTGATTGTTGGTGTCCAAAATGATTACTGCTCCTTCGGCTCCAGTTTATGCGACACTGTGTCCTTATTATTCTGTTTAAAAATGAGTGACACGATTCTATATTTGGAAGCATGAACTTACTTTTTTGCTCTTAATTTGAACTTTGAAGCTTTTATTGCCATACTATGACCATGTTTTAGATCACTAGTTTCAAAGTCTTATATAGTCACACAAAATGTCATGGCTTGTTTAAGACCTCAAGTTTCAAGTTTTTTAAAAAAAAACTCCATGCCGAGTCAAACTATGTCACATAAATTGGAATGAAGTACATCTTTCCAATTTTTGTACAACCTCAGGAATTAGACTCGCAACTTGATTGCACTCATTGTCATTTAGCTGTAGCAAGAGTTCTGTTTTAGAATTTCCTTATATGTTCAACTGGCTTTGTAACATATATGAGATGGATTACATGGTCTCCTAAAGTTTGAAATGCTCAATATATTGACGGTTGATATCACTTTAATGAAAAAAATGGTACCTTTAAACCCTGTATGTGAAGATTGGATATTCCACCCCCTCAATCAATTCAATATGTAGTATCTTTTCTTTAACCAGTATGTATGTTGTCCATTTATCAAATGCACAACTGTTTATATTGTACGGACATTACATTTGCAGGTACAATTTGAAAGAGGTTTTAGACTGATGAGAGCTTATGGAACATCAGTATGGAGTTACAACGAGCAAAAAACTTTCTAAGACAATGAGTCACTAATACTTCTTGGAACAAATGCTAACTTCACTACTTAAAAAGGTCTCTCAAGGTGGTTGCGATGATGGTATATGCATTTATCCATTGGCTTGCATCTTGTCAACAGTGTTTCCTTTGATCAAAGTAATTGAGGTTAAACATTCTGTCCAGATTTTATTTAGGGGAGTCCAGAGGATTGCTGACTAATATCTTGATGATGCTTTTCTCCGTTATTCTACTTTTCTGCTGGGTTTGA</genome_strand>
        <mrna_strand>TGGAGATGTTACTGATAGAATTAATCTAACTCCAGTTGCTTTGATGGAGGGAGGAGCATTGGCAAAAACTATTTTTGCTGGTGAACCCACAAAACCTGATTATAG....................................................................................................................................................................................................................................GAACGTACCATGTGCAGTATTTTCCCAGCCACCTATTGGACTAGTTGGCCTGACAGAAGAAGAG....................................................................GCCATCAAAGAATATGGTGATGTTGATGTTTATACAGCAAATTTTAGACCATTAAAGGCCACTCTTTCTGGTCTTCCAGATCGGGTTTTCATGAAATTGGTAGTATGTGCGAAGTCTAGCAAAGTTCTGGGCTTGCACATGTGTGGAGACGATGCACCAGAAATTGTACAG.........................................................................................GGATTTGCGGTTGCAGTCAAAGCAGGGTTGACCAAGGCGGACTTCGATACCACTGTGGGTATTCACCCTACAGCAGCAGAGGAGTTTGTCACCATGCGAACCCCAACAAGGAAGATTCGAAGCAGTCCATCTGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAAGGCAGAGCACGACTCTAAAGCTGCTGCAAGAGTTTGATATGCGGCGATAAAGGCTCAATTTGTTAAGTGACACAGAGAACACGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAATTTGAAAGAGGTTTTAGACTGATGAGAGCTTATGGAACATCAGTATGGAGTTACAACGAGCAAAAAACTTTCTAAGACAATGAGTCACTAATACTTCTTGGAACAAATGCTAACTTCACTACTTAAAAAGGTCTCTCAAGGTGGTTGCGATGATGGTATATGCATTTATCCATTGGCTTGCATCTTGTCAACAGTGTTTCCTTTGATCAAAGTAATTGAGGTTAAACATTCTGTCCAGATTTTATTTANGGGAGTCCAGAAGATTGCTGACTAATATCTTGATGATGCTTTTCTCCGNTATTCTACTTTTCTGCTGGGTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E252015" ref_strand="+" ref_description="SGN-E252015 [cLEG-8-A16]">
      <seq>tggatgtgggatattgtaactgcacaactcttttatgatgcatctaattaagtgttcaatttttggtttcttattttattctcttacaactgnagtgattgttggtgtccaaaatgattactgctccttcggctccagtttatgcgacactgtgtccttattattctgtttaaaaatgagtgacacgattctatatttggaagcatgaacttacttttttgctcttaatttgaactttgaaacttttattgccatactatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="15302" stop="14442"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15002" g_stop="14742" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="261" r_length="261" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E252015" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>261</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E252015" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15002" e_stop="14742"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGATGTGGGATATTGTAACTGCACAACTCTTTTATGATGCATCTAATTAAGTGTTCAATTTTTGGTTTCTTATTTTATTCTCTTACAACTGAGGTGATTGTTGGTGTCCAAAATGATTACTGCTCCTTCGGCTCCAGTTTATGCGACACTGTGTCCTTATTATTCTGTTTAAAAATGAGTGACACGATTCTATATTTGGAAGCATGAACTTACTTTTTTGCTCTTAATTTGAACTTTGAAGCTTTTATTGCCATACTATG</genome_strand>
        <mrna_strand>TGGATGTGGGATATTGTAACTGCACAACTCTTTTATGATGCATCTAATTAAGTGTTCAATTTTTGGTTTCTTATTTTATTCTCTTACAACTGNAGTGATTGTTGGTGTCCAAAATGATTACTGCTCCTTCGGCTCCAGTTTATGCGACACTGTGTCCTTATTATTCTGTTTAAAAATGAGTGACACGATTCTATATTTGGAAGCATGAACTTACTTTTTTGCTCTTAATTTGAACTTTGAAACTTTTATTGCCATACTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272295" ref_strand="+" ref_description="SGN-E272295 [cLEM-19-N15]">
      <seq>ggagatgttactgatagaattaatctaactccagttgcttggatggagggaggagcattggcaaaaactatttttgctggtgaacccacaaaacctgattataggaacgtaccatgtgcagtattttcccagccacctattggactagttggcctgacagaagaagaggccatcaaagaatatggtgatgttgatgtttatacagcaaattttagaccattaaaggccactctttctggtcttccagatcgggttttcatgaaattggtagtatgtgcgaagtctagcaaagttctgggcttgcacatgtgtggagacgatgcaccagaaattgtacagggatttgcggttgcagtcaaagcagggttgaccaaggcggacttcgataccactgtgggtattcaccctacagcagcagaggagtttgtcaccatgcgaaccccaacaaggaagattcgaagcagtccatctgagggtaaggcagagcacgactctaaagctgctgcaagagtttgatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="17737" stop="15430"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17437" g_stop="17334" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17333" i_stop="17106" i_length="228">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.125" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17105" g_stop="17042" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="168" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17041" i_stop="16974" i_length="68">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16973" g_stop="16803" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="339" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16802" i_stop="16714" i_length="89">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16713" g_stop="16579" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="474" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16578" i_stop="15776" i_length="803">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15775" g_stop="15730" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="520" r_length="46" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E272295" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272295" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17437" e_stop="17334"/>
          <exon e_start="17105" e_stop="17042"/>
          <exon e_start="16973" e_stop="16803"/>
          <exon e_start="16713" e_stop="16579"/>
          <exon e_start="15775" e_stop="15730"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGATGTTACTGATAGAATTAATCTAACTCCAGTTGCTTTGATGGAGGGAGGAGCATTGGCAAAAACTATTTTTGCTGGTGAACCCACAAAACCTGATTATAGGTACCTCTTCTTTCTTCTGTGAATTCATTTGATGACTTAAAAAGTTTGACAAGGACTGCCGAAGATGCACACTTCTCCAATTATTTTTTACTACAAATTGGTAATGTGCTTTGAGATCTGTGGTTCTACCATGTAAAATGCATAAGCTCTCACAGCTGAATTTTAATTTGTTTAAAAAGAAACATCTATAGCTGCTCCCTGATCTGAGTGTTCTGTTCTCCCAAATAGGAACGTACCATGTGCAGTATTTTCCCAGCCACCTATTGGACTAGTTGGCCTGACAGAAGAAGAGGTATAATAGCGAGAGTATGTGAATTGATAATTAATTATTATGATAAATGATTTGAATTGTTTTTACAGGCCATCAAAGAATATGGTGATGTTGATGTTTATACAGCAAATTTTAGACCATTAAAGGCCACTCTTTCTGGTCTTCCAGATCGGGTTTTCATGAAATTGGTAGTATGTGCGAAGTCTAGCAAAGTTCTGGGCTTGCACATGTGTGGAGACGATGCACCAGAAATTGTACAGGTTGGAGTTTCCGTTTAATTCTTTGGTGCATATTTCAGATTGTTCATAAAATATGCATGTAATGCTTTTTGTCATAATGAAACTTCCAGGGATTTGCGGTTGCAGTCAAAGCAGGGTTGACCAAGGCGGACTTCGATACCACTGTGGGTATTCACCCTACAGCAGCAGAGGAGTTTGTCACCATGCGAACCCCAACAAGGAAGATTCGAAGCAGTCCATCTGAGGTTTGTCATTTACCTGATTCTTGTGCTTTCCTCCTTGTAATTCTTTTGTTATAGTATTTGTGAAGAAATTGTTAGGATTATTAGAAAAAGATCGAGTCACATGACGATGAACATGAAAATCTAAATCAATTGACTTTGACTTCCCCTTGCCTTTGTTCGAATTCCCAGTTCGACCTATTTTTGTATATAACTTATAACTTCAGTTCTTCAAAGGGAGAGTGAAACCTTAGAGTTCAATGGACATAACTCCGATCTCTTGATTTTTTCTGAAATATGACTTGCCCCTTTATTCATCAAAAACCTCTTTAATAGGAGTCTTATTACATCAATAGGAAGTCAATTCTTATGAAAGTAGGAAATCTAAATCCTATTCCAAACTAATATATATAGCTTAACTTAATACTTATGAAGCTATGAAACATAAATCCTCTTCTAGAATAATAAATAAAGCTACTAAAAATATAACTAAATACTTATTTAATGGCTTTCAACGCATGCACAACAGAACCACTTTAACTTCAACATCTCTCTCACTCTTAGTGAAACTGAAGTCTGAAATCGCATAATGTATCAACCAGTGTGCTCATTATTAGGACTGTTCCTCCATTGAACTGAATATCCCTTTAATGAAGCAAATGATCAACTTTCAGCTTTTTCCCTCTTCTTCTTCCAATAAATAAGATTGGTCTTTGAAAAAATTACTTCATACTCTGTGGAAACTTTAATAGATTTTTGATGTCTTAATTTTGTGTCATGCTCTTTTCTGCTACTGAATAGACTATGCATTTTGTCTTTTTTAACAGGGTAAGGCAGAGCACGACTCTAAAGCTGCTGCAAGAGTTTGATATG</genome_strand>
        <mrna_strand>GGAGATGTTACTGATAGAATTAATCTAACTCCAGTTGCTTGGATGGAGGGAGGAGCATTGGCAAAAACTATTTTTGCTGGTGAACCCACAAAACCTGATTATAG....................................................................................................................................................................................................................................GAACGTACCATGTGCAGTATTTTCCCAGCCACCTATTGGACTAGTTGGCCTGACAGAAGAAGAG....................................................................GCCATCAAAGAATATGGTGATGTTGATGTTTATACAGCAAATTTTAGACCATTAAAGGCCACTCTTTCTGGTCTTCCAGATCGGGTTTTCATGAAATTGGTAGTATGTGCGAAGTCTAGCAAAGTTCTGGGCTTGCACATGTGTGGAGACGATGCACCAGAAATTGTACAG.........................................................................................GGATTTGCGGTTGCAGTCAAAGCAGGGTTGACCAAGGCGGACTTCGATACCACTGTGGGTATTCACCCTACAGCAGCAGAGGAGTTTGTCACCATGCGAACCCCAACAAGGAAGATTCGAAGCAGTCCATCTGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAAGGCAGAGCACGACTCTAAAGCTGCTGCAAGAGTTTGATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E203764" ref_strand="+" ref_description="SGN-E203764 [cLEC-17-B11]">
      <seq>tgacgagtattctcgtacatcagtgccatcaatttgggcagttggagatgttactgatagaattaatctaactccagttgctttgatggagggaggagcattggcaaaaactatttttgctggtgaacccacaaaacctgattataggaacgtaccatgtgcagtattttcccagccacctattggactagttggcctgacagaagaagaggccatcaaagaatatggtgatgttgatgtttatacagcaaattttagaccattaaaggccactctttctggtcttccagatcgggttttcatgaaattggtagtatgtgcgaagtctagcaaagttctgggcttgcacatgtgtggagacgatgcaccagaaattgtacacggatttgcggttgcagtcaaagcagggttgaccaaagcggacttcgataccactgtgggtattcaccctacagcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="17780" stop="16337"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17480" g_stop="17334" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="147" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17333" i_stop="17106" i_length="228">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.125" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17105" g_stop="17042" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="211" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17041" i_stop="16974" i_length="68">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16973" g_stop="16803" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="382" r_length="171" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16802" i_stop="16714" i_length="89">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16713" g_stop="16637" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="459" r_length="77" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E203764" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203764" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17480" e_stop="17334"/>
          <exon e_start="17105" e_stop="17042"/>
          <exon e_start="16973" e_stop="16803"/>
          <exon e_start="16713" e_stop="16637"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACGAGTATTCTCGTACATCAGTGCCATCAATTTGGGCAGTTGGAGATGTTACTGATAGAATTAATCTAACTCCAGTTGCTTTGATGGAGGGAGGAGCATTGGCAAAAACTATTTTTGCTGGTGAACCCACAAAACCTGATTATAGGTACCTCTTCTTTCTTCTGTGAATTCATTTGATGACTTAAAAAGTTTGACAAGGACTGCCGAAGATGCACACTTCTCCAATTATTTTTTACTACAAATTGGTAATGTGCTTTGAGATCTGTGGTTCTACCATGTAAAATGCATAAGCTCTCACAGCTGAATTTTAATTTGTTTAAAAAGAAACATCTATAGCTGCTCCCTGATCTGAGTGTTCTGTTCTCCCAAATAGGAACGTACCATGTGCAGTATTTTCCCAGCCACCTATTGGACTAGTTGGCCTGACAGAAGAAGAGGTATAATAGCGAGAGTATGTGAATTGATAATTAATTATTATGATAAATGATTTGAATTGTTTTTACAGGCCATCAAAGAATATGGTGATGTTGATGTTTATACAGCAAATTTTAGACCATTAAAGGCCACTCTTTCTGGTCTTCCAGATCGGGTTTTCATGAAATTGGTAGTATGTGCGAAGTCTAGCAAAGTTCTGGGCTTGCACATGTGTGGAGACGATGCACCAGAAATTGTACAGGTTGGAGTTTCCGTTTAATTCTTTGGTGCATATTTCAGATTGTTCATAAAATATGCATGTAATGCTTTTTGTCATAATGAAACTTCCAGGGATTTGCGGTTGCAGTCAAAGCAGGGTTGACCAAGGCGGACTTCGATACCACTGTGGGTATTCACCCTACAGCAGC</genome_strand>
        <mrna_strand>TGACGAGTATTCTCGTACATCAGTGCCATCAATTTGGGCAGTTGGAGATGTTACTGATAGAATTAATCTAACTCCAGTTGCTTTGATGGAGGGAGGAGCATTGGCAAAAACTATTTTTGCTGGTGAACCCACAAAACCTGATTATAG....................................................................................................................................................................................................................................GAACGTACCATGTGCAGTATTTTCCCAGCCACCTATTGGACTAGTTGGCCTGACAGAAGAAGAG....................................................................GCCATCAAAGAATATGGTGATGTTGATGTTTATACAGCAAATTTTAGACCATTAAAGGCCACTCTTTCTGGTCTTCCAGATCGGGTTTTCATGAAATTGGTAGTATGTGCGAAGTCTAGCAAAGTTCTGGGCTTGCACATGTGTGGAGACGATGCACCAGAAATTGTACAC.........................................................................................GGATTTGCGGTTGCAGTCAAAGCAGGGTTGACCAAAGCGGACTTCGATACCACTGTGGGTATTCACCCTACAGCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E228523" ref_strand="+" ref_description="SGN-E228523 [cLED-3-J14]">
      <seq>caggacgaagtccaaatactaagaatttaggattagatacagtgggagtgaaaatgacaaagaacggagccatagaggttgacgagtattctcgtacatcagtgccatcaatttgggcagttggagatgttactgatagaattaatctaactccagttgctttgatggagggaggagcattggcaaaaactatttttgctggtgaacccacaaaacctgattataggaacgtaccatgtgcagtattttcccagccacctattggactagttggcctgacagaagaagaggccatcaaagaatatggtgatgttgatgtttatacagcaaattttagaccattaaaggccactctttctggtcttccagatcgggttttcatgaaattggtagtatgtgcgaagtctagcaaagttctgggcttgcacatgtgtggagacgatgcaccagaaattgtacagggatttgcggttgcagtcaaagcagggttgacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="18571" stop="16380"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18271" g_stop="18249" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18248" i_stop="17644" i_length="605">
            <donor d_prob="0.940" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17643" g_stop="17590" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="77" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17589" i_stop="17483" i_length="107">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17482" g_stop="17334" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="226" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17333" i_stop="17106" i_length="228">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.125" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17105" g_stop="17042" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="290" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17041" i_stop="16974" i_length="68">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16973" g_stop="16803" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="461" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16802" i_stop="16714" i_length="89">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16713" g_stop="16680" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="495" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E228523" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228523" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18271" e_stop="18249"/>
          <exon e_start="17643" e_stop="17590"/>
          <exon e_start="17482" e_stop="17334"/>
          <exon e_start="17105" e_stop="17042"/>
          <exon e_start="16973" e_stop="16803"/>
          <exon e_start="16713" e_stop="16680"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGACGAAGTCCAAATACTAAGGTTTATTCTGCTTTCTGTTGGTAGCTTATATCTCTGATAGACCTCATAGGTTAATTCAGTTAATTACTATGTTTGAAGCCTTATGGAGGAAGAGCATGGTGATTTCTCCTCTATAGTCTAGCCAATCATTCTCCCTCCCCCCAAAATTGGCAATACTAAACCCAAAACCCTGTGATGCCTGTGAAAGGCTGAAAGTTTGCTAACATTTAGCGCAGTGGAAATCCAAGGTACTCTGACGAGATTGGAACTCCAAGGTACTCTGATGAGAAGATCTTTTACTGAACCTTCTTTTGGGCTCTCTCTCCCATCCTCTCTTTGGGTGGTGTGAGATTGCCAAGGCCAGTCAGTTTTTTTTTTTTGGTGGGGGTGGTGGGTGGCGGTAAATTATTTGGTTGGACTGGTGATCCTGTAAAGGTGATTATTTTGCTTCTATTTTCATCATCAACTCCTTCGTTGTTTGTTATTTGATGTTGTTCATATTAAGTGGAAGGATATCGTCTTCTCTTATTACTGCTTTCATCTTTTTTTGCAAACACATGCTCTCTTTGATTGGATATTCAAGTTGTAACCACCACTTGCTTTCTTTTTGTTTAAACACATTGCAGAATTTAGGATTAGATACAGTGGGAGTGAAAATGACAAAGAACGGAGCCATAGAGGTGACTGCCTTTCTGCCTTCCTCTCTCTTTTTTTTTTCCGAATTTGCTTTAACTATTTAGTGCATGTGTTCTTGAATGAGAGTTTAATTTGCAAATTGTTTTTACAGGTTGACGAGTATTCTCGTACATCAGTGCCATCAATTTGGGCAGTTGGAGATGTTACTGATAGAATTAATCTAACTCCAGTTGCTTTGATGGAGGGAGGAGCATTGGCAAAAACTATTTTTGCTGGTGAACCCACAAAACCTGATTATAGGTACCTCTTCTTTCTTCTGTGAATTCATTTGATGACTTAAAAAGTTTGACAAGGACTGCCGAAGATGCACACTTCTCCAATTATTTTTTACTACAAATTGGTAATGTGCTTTGAGATCTGTGGTTCTACCATGTAAAATGCATAAGCTCTCACAGCTGAATTTTAATTTGTTTAAAAAGAAACATCTATAGCTGCTCCCTGATCTGAGTGTTCTGTTCTCCCAAATAGGAACGTACCATGTGCAGTATTTTCCCAGCCACCTATTGGACTAGTTGGCCTGACAGAAGAAGAGGTATAATAGCGAGAGTATGTGAATTGATAATTAATTATTATGATAAATGATTTGAATTGTTTTTACAGGCCATCAAAGAATATGGTGATGTTGATGTTTATACAGCAAATTTTAGACCATTAAAGGCCACTCTTTCTGGTCTTCCAGATCGGGTTTTCATGAAATTGGTAGTATGTGCGAAGTCTAGCAAAGTTCTGGGCTTGCACATGTGTGGAGACGATGCACCAGAAATTGTACAGGTTGGAGTTTCCGTTTAATTCTTTGGTGCATATTTCAGATTGTTCATAAAATATGCATGTAATGCTTTTTGTCATAATGAAACTTCCAGGGATTTGCGGTTGCAGTCAAAGCAGGGTTGACCA</genome_strand>
        <mrna_strand>CAGGACGAAGTCCAAATACTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTAGGATTAGATACAGTGGGAGTGAAAATGACAAAGAACGGAGCCATAGAG...........................................................................................................GTTGACGAGTATTCTCGTACATCAGTGCCATCAATTTGGGCAGTTGGAGATGTTACTGATAGAATTAATCTAACTCCAGTTGCTTTGATGGAGGGAGGAGCATTGGCAAAAACTATTTTTGCTGGTGAACCCACAAAACCTGATTATAG....................................................................................................................................................................................................................................GAACGTACCATGTGCAGTATTTTCCCAGCCACCTATTGGACTAGTTGGCCTGACAGAAGAAGAG....................................................................GCCATCAAAGAATATGGTGATGTTGATGTTTATACAGCAAATTTTAGACCATTAAAGGCCACTCTTTCTGGTCTTCCAGATCGGGTTTTCATGAAATTGGTAGTATGTGCGAAGTCTAGCAAAGTTCTGGGCTTGCACATGTGTGGAGACGATGCACCAGAAATTGTACAG.........................................................................................GGATTTGCGGTTGCAGTCAAAGCAGGGTTGACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E207688" ref_strand="+" ref_description="SGN-E207688 [cLEC-32-L10]">
      <seq>tccatgtatttatacgacaaaagaaggttttgagaggctttgatgaagaaattagggattttgttggtgaacagatgtcactgagaggcattgagttccataccgaggagtcgcctcaggctattgtcaagtcagcagatggttcactgtctataaagactaacagaggaacagttgaaggtttctctcatatcatgtttgcaacaggacgaagtccaaatactaagaatttaggattagatacagtgggagtgaaaatgacaaagaacggagccatagaggttgacgagtattctcgtacatcagtgccatcaatttgggcagttggagatgttactgatagaattaatctaactccagttgctttgatggagggaggagcattggcaaaaactatttttgctggtgaacccacaaaacctgattataggaacgtaccatgtgcagtattttcccagccacctattggactagttggcctgacagaagaagaggccatcaaagaatatggtgatgttgatgtttatacagcaaattttagaccattaaaggccactctttctggtcttccagatcgggttttcatgaaattggtagtatgtgcgaagtctagcaaagttctgggcttgcacatgtgtggagacgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="18875" stop="16520"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18575" g_stop="18526" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18525" i_stop="18426" i_length="100">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18425" g_stop="18249" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="227" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18248" i_stop="17644" i_length="605">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17643" g_stop="17590" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="281" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17589" i_stop="17483" i_length="107">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17482" g_stop="17334" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="430" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17333" i_stop="17106" i_length="228">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.125" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17105" g_stop="17042" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="494" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17041" i_stop="16974" i_length="68">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16973" g_stop="16820" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="648" r_length="154" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E207688" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207688" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18575" e_stop="18526"/>
          <exon e_start="18425" e_stop="18249"/>
          <exon e_start="17643" e_stop="17590"/>
          <exon e_start="17482" e_stop="17334"/>
          <exon e_start="17105" e_stop="17042"/>
          <exon e_start="16973" e_stop="16820"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCATGTATTTATACGACAAAAGAAGGTTTTGAGAGGCTTTGATGAAGAAGTGAGTAATTTATCCCTGACATGCAGAGTAGATTCTGTTAAGTATATTCTCTCATAACCCAAAATCTGGATGATGCACTCAACTTCTTTTGTATATGCAGATTAGGGATTTTGTTGGTGAACAGATGTCACTGAGAGGCATTGAGTTCCATACCGAGGAGTCGCCTCAGGCTATTGTCAAGTCAGCAGATGGTTCACTGTCTATAAAGACTAACAGAGGAACAGTTGAAGGTTTCTCTCATATCATGTTTGCAACAGGACGAAGTCCAAATACTAAGGTTTATTCTGCTTTCTGTTGGTAGCTTATATCTCTGATAGACCTCATAGGTTAATTCAGTTAATTACTATGTTTGAAGCCTTATGGAGGAAGAGCATGGTGATTTCTCCTCTATAGTCTAGCCAATCATTCTCCCTCCCCCCAAAATTGGCAATACTAAACCCAAAACCCTGTGATGCCTGTGAAAGGCTGAAAGTTTGCTAACATTTAGCGCAGTGGAAATCCAAGGTACTCTGACGAGATTGGAACTCCAAGGTACTCTGATGAGAAGATCTTTTACTGAACCTTCTTTTGGGCTCTCTCTCCCATCCTCTCTTTGGGTGGTGTGAGATTGCCAAGGCCAGTCAGTTTTTTTTTTTTGGTGGGGGTGGTGGGTGGCGGTAAATTATTTGGTTGGACTGGTGATCCTGTAAAGGTGATTATTTTGCTTCTATTTTCATCATCAACTCCTTCGTTGTTTGTTATTTGATGTTGTTCATATTAAGTGGAAGGATATCGTCTTCTCTTATTACTGCTTTCATCTTTTTTTGCAAACACATGCTCTCTTTGATTGGATATTCAAGTTGTAACCACCACTTGCTTTCTTTTTGTTTAAACACATTGCAGAATTTAGGATTAGATACAGTGGGAGTGAAAATGACAAAGAACGGAGCCATAGAGGTGACTGCCTTTCTGCCTTCCTCTCTCTTTTTTTTTTCCGAATTTGCTTTAACTATTTAGTGCATGTGTTCTTGAATGAGAGTTTAATTTGCAAATTGTTTTTACAGGTTGACGAGTATTCTCGTACATCAGTGCCATCAATTTGGGCAGTTGGAGATGTTACTGATAGAATTAATCTAACTCCAGTTGCTTTGATGGAGGGAGGAGCATTGGCAAAAACTATTTTTGCTGGTGAACCCACAAAACCTGATTATAGGTACCTCTTCTTTCTTCTGTGAATTCATTTGATGACTTAAAAAGTTTGACAAGGACTGCCGAAGATGCACACTTCTCCAATTATTTTTTACTACAAATTGGTAATGTGCTTTGAGATCTGTGGTTCTACCATGTAAAATGCATAAGCTCTCACAGCTGAATTTTAATTTGTTTAAAAAGAAACATCTATAGCTGCTCCCTGATCTGAGTGTTCTGTTCTCCCAAATAGGAACGTACCATGTGCAGTATTTTCCCAGCCACCTATTGGACTAGTTGGCCTGACAGAAGAAGAGGTATAATAGCGAGAGTATGTGAATTGATAATTAATTATTATGATAAATGATTTGAATTGTTTTTACAGGCCATCAAAGAATATGGTGATGTTGATGTTTATACAGCAAATTTTAGACCATTAAAGGCCACTCTTTCTGGTCTTCCAGATCGGGTTTTCATGAAATTGGTAGTATGTGCGAAGTCTAGCAAAGTTCTGGGCTTGCACATGTGTGGAGACGATG</genome_strand>
        <mrna_strand>TCCATGTATTTATACGACAAAAGAAGGTTTTGAGAGGCTTTGATGAAGAA....................................................................................................ATTAGGGATTTTGTTGGTGAACAGATGTCACTGAGAGGCATTGAGTTCCATACCGAGGAGTCGCCTCAGGCTATTGTCAAGTCAGCAGATGGTTCACTGTCTATAAAGACTAACAGAGGAACAGTTGAAGGTTTCTCTCATATCATGTTTGCAACAGGACGAAGTCCAAATACTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTAGGATTAGATACAGTGGGAGTGAAAATGACAAAGAACGGAGCCATAGAG...........................................................................................................GTTGACGAGTATTCTCGTACATCAGTGCCATCAATTTGGGCAGTTGGAGATGTTACTGATAGAATTAATCTAACTCCAGTTGCTTTGATGGAGGGAGGAGCATTGGCAAAAACTATTTTTGCTGGTGAACCCACAAAACCTGATTATAG....................................................................................................................................................................................................................................GAACGTACCATGTGCAGTATTTTCCCAGCCACCTATTGGACTAGTTGGCCTGACAGAAGAAGAG....................................................................GCCATCAAAGAATATGGTGATGTTGATGTTTATACAGCAAATTTTAGACCATTAAAGGCCACTCTTTCTGGTCTTCCAGATCGGGTTTTCATGAAATTGGTAGTATGTGCGAAGTCTAGCAAAGTTCTGGGCTTGCACATGTGTGGAGACGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E254248" ref_strand="+" ref_description="SGN-E254248 [cLEG-27-C20]">
      <seq>gctgcccttgatttgccaacgaagcctgacaaaattgccattgttggaggcggttatattgcacttgaatttgctggaatcttcaatggattgaaaagtgaggtccatgtatttatacgacaaaagaaggttttgagaggctttgatgaagaaattagggattttgttggtgaacagatgtcactgagaggcattgagttccataccgaggagtcgcctcaggctattgtcaagtcagcagatggttcactgtctataaagactaacagaggaacagttgaaggtttctctcatatcatgtttgcaacaggacgaagtccaaatactaagaatttaggattagatacagtgggagtgaaaatgacaaagaacggagccatagaggttgacgagtattctcgtacatcagtgccatcaatttgggcagttggagatgttactgatagaattaatctaactccagttgctttgatggagggaggagcattggcaaaaactatttttgctggtgaacccacaaaacctgattataggaacgtaccatgtgcagtattttcccagccacctattggactagttggcctgacagaagaagaggccatcaaagaatatggtgatgttgatgtttatacagcaaattttagaccattaaaggccactctttctggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="18978" stop="16602"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18678" g_stop="18526" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18525" i_stop="18426" i_length="100">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18425" g_stop="18249" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="330" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18248" i_stop="17644" i_length="605">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17643" g_stop="17590" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="384" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17589" i_stop="17483" i_length="107">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17482" g_stop="17334" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="533" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17333" i_stop="17106" i_length="228">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.125" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17105" g_stop="17042" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="597" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17041" i_stop="16974" i_length="68">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16973" g_stop="16902" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="598" r_stop="669" r_length="72" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E254248" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254248" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18678" e_stop="18526"/>
          <exon e_start="18425" e_stop="18249"/>
          <exon e_start="17643" e_stop="17590"/>
          <exon e_start="17482" e_stop="17334"/>
          <exon e_start="17105" e_stop="17042"/>
          <exon e_start="16973" e_stop="16902"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGCCCTTGATTTGCCAACGAAGCCTGACAAAATTGCCATTGTTGGAGGCGGTTATATTGCACTTGAATTTGCTGGAATCTTCAATGGATTGAAAAGTGAGGTCCATGTATTTATACGACAAAAGAAGGTTTTGAGAGGCTTTGATGAAGAAGTGAGTAATTTATCCCTGACATGCAGAGTAGATTCTGTTAAGTATATTCTCTCATAACCCAAAATCTGGATGATGCACTCAACTTCTTTTGTATATGCAGATTAGGGATTTTGTTGGTGAACAGATGTCACTGAGAGGCATTGAGTTCCATACCGAGGAGTCGCCTCAGGCTATTGTCAAGTCAGCAGATGGTTCACTGTCTATAAAGACTAACAGAGGAACAGTTGAAGGTTTCTCTCATATCATGTTTGCAACAGGACGAAGTCCAAATACTAAGGTTTATTCTGCTTTCTGTTGGTAGCTTATATCTCTGATAGACCTCATAGGTTAATTCAGTTAATTACTATGTTTGAAGCCTTATGGAGGAAGAGCATGGTGATTTCTCCTCTATAGTCTAGCCAATCATTCTCCCTCCCCCCAAAATTGGCAATACTAAACCCAAAACCCTGTGATGCCTGTGAAAGGCTGAAAGTTTGCTAACATTTAGCGCAGTGGAAATCCAAGGTACTCTGACGAGATTGGAACTCCAAGGTACTCTGATGAGAAGATCTTTTACTGAACCTTCTTTTGGGCTCTCTCTCCCATCCTCTCTTTGGGTGGTGTGAGATTGCCAAGGCCAGTCAGTTTTTTTTTTTTGGTGGGGGTGGTGGGTGGCGGTAAATTATTTGGTTGGACTGGTGATCCTGTAAAGGTGATTATTTTGCTTCTATTTTCATCATCAACTCCTTCGTTGTTTGTTATTTGATGTTGTTCATATTAAGTGGAAGGATATCGTCTTCTCTTATTACTGCTTTCATCTTTTTTTGCAAACACATGCTCTCTTTGATTGGATATTCAAGTTGTAACCACCACTTGCTTTCTTTTTGTTTAAACACATTGCAGAATTTAGGATTAGATACAGTGGGAGTGAAAATGACAAAGAACGGAGCCATAGAGGTGACTGCCTTTCTGCCTTCCTCTCTCTTTTTTTTTTCCGAATTTGCTTTAACTATTTAGTGCATGTGTTCTTGAATGAGAGTTTAATTTGCAAATTGTTTTTACAGGTTGACGAGTATTCTCGTACATCAGTGCCATCAATTTGGGCAGTTGGAGATGTTACTGATAGAATTAATCTAACTCCAGTTGCTTTGATGGAGGGAGGAGCATTGGCAAAAACTATTTTTGCTGGTGAACCCACAAAACCTGATTATAGGTACCTCTTCTTTCTTCTGTGAATTCATTTGATGACTTAAAAAGTTTGACAAGGACTGCCGAAGATGCACACTTCTCCAATTATTTTTTACTACAAATTGGTAATGTGCTTTGAGATCTGTGGTTCTACCATGTAAAATGCATAAGCTCTCACAGCTGAATTTTAATTTGTTTAAAAAGAAACATCTATAGCTGCTCCCTGATCTGAGTGTTCTGTTCTCCCAAATAGGAACGTACCATGTGCAGTATTTTCCCAGCCACCTATTGGACTAGTTGGCCTGACAGAAGAAGAGGTATAATAGCGAGAGTATGTGAATTGATAATTAATTATTATGATAAATGATTTGAATTGTTTTTACAGGCCATCAAAGAATATGGTGATGTTGATGTTTATACAGCAAATTTTAGACCATTAAAGGCCACTCTTTCTGGT</genome_strand>
        <mrna_strand>GCTGCCCTTGATTTGCCAACGAAGCCTGACAAAATTGCCATTGTTGGAGGCGGTTATATTGCACTTGAATTTGCTGGAATCTTCAATGGATTGAAAAGTGAGGTCCATGTATTTATACGACAAAAGAAGGTTTTGAGAGGCTTTGATGAAGAA....................................................................................................ATTAGGGATTTTGTTGGTGAACAGATGTCACTGAGAGGCATTGAGTTCCATACCGAGGAGTCGCCTCAGGCTATTGTCAAGTCAGCAGATGGTTCACTGTCTATAAAGACTAACAGAGGAACAGTTGAAGGTTTCTCTCATATCATGTTTGCAACAGGACGAAGTCCAAATACTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTAGGATTAGATACAGTGGGAGTGAAAATGACAAAGAACGGAGCCATAGAG...........................................................................................................GTTGACGAGTATTCTCGTACATCAGTGCCATCAATTTGGGCAGTTGGAGATGTTACTGATAGAATTAATCTAACTCCAGTTGCTTTGATGGAGGGAGGAGCATTGGCAAAAACTATTTTTGCTGGTGAACCCACAAAACCTGATTATAG....................................................................................................................................................................................................................................GAACGTACCATGTGCAGTATTTTCCCAGCCACCTATTGGACTAGTTGGCCTGACAGAAGAAGAG....................................................................GCCATCAAAGAATATGGTGATGTTGATGTTTATACAGCAAATTTTAGACCATTAAAGGCCACTCTTTCTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E213256" ref_strand="+" ref_description="SGN-E213256 [cLEC-72-N20]">
      <seq>tggaagcgagtatgctatagattctgatgctgcccttgatttgccaacgaagcctgacaaaattgccattgttggaggcggttatattgcacttgaatttgctggaatcttcaatggattgaaaagtgaggtccatgtatttatacgacaaaagaaggttttgagaggctttgatgaagaaattagggattttgttggtgaacagatgtcactgagaggcattgagttccataccgaggagtcgcctcaggctattgtcaagtcagcagatggttcactgtctataaagactaacagaggaacagttgaaggtttctctcatatcatgtttgcaacaggacgaagtccaaatactaagaatttaggattagatacagtgggagtgaaaatgacaaagaacggagccatagaggttgacgagtattctcgtacatcagtgccatcaatttgggcagttggagatgttactgatagaattaatctaactccagttgctttgatggagggaggagcattggcaaaaactatttttgctggtgaacccacaaaacctgattatangaacgtaccatgtgcagtattttcccagccacctattggactagttggcctgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="19006" stop="16752"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18706" g_stop="18526" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18525" i_stop="18426" i_length="100">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18425" g_stop="18249" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="358" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18248" i_stop="17644" i_length="605">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17643" g_stop="17590" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="412" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17589" i_stop="17483" i_length="107">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17482" g_stop="17334" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="561" r_length="149" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17333" i_stop="17106" i_length="228">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.125" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17105" g_stop="17052" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="615" r_length="54" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E213256" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213256" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18706" e_stop="18526"/>
          <exon e_start="18425" e_stop="18249"/>
          <exon e_start="17643" e_stop="17590"/>
          <exon e_start="17482" e_stop="17334"/>
          <exon e_start="17105" e_stop="17052"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAAGCGAGTATGCTATAGATTCTGATGCTGCCCTTGATTTGCCAACGAAGCCTGACAAAATTGCCATTGTTGGAGGCGGTTATATTGCACTTGAATTTGCTGGAATCTTCAATGGATTGAAAAGTGAGGTCCATGTATTTATACGACAAAAGAAGGTTTTGAGAGGCTTTGATGAAGAAGTGAGTAATTTATCCCTGACATGCAGAGTAGATTCTGTTAAGTATATTCTCTCATAACCCAAAATCTGGATGATGCACTCAACTTCTTTTGTATATGCAGATTAGGGATTTTGTTGGTGAACAGATGTCACTGAGAGGCATTGAGTTCCATACCGAGGAGTCGCCTCAGGCTATTGTCAAGTCAGCAGATGGTTCACTGTCTATAAAGACTAACAGAGGAACAGTTGAAGGTTTCTCTCATATCATGTTTGCAACAGGACGAAGTCCAAATACTAAGGTTTATTCTGCTTTCTGTTGGTAGCTTATATCTCTGATAGACCTCATAGGTTAATTCAGTTAATTACTATGTTTGAAGCCTTATGGAGGAAGAGCATGGTGATTTCTCCTCTATAGTCTAGCCAATCATTCTCCCTCCCCCCAAAATTGGCAATACTAAACCCAAAACCCTGTGATGCCTGTGAAAGGCTGAAAGTTTGCTAACATTTAGCGCAGTGGAAATCCAAGGTACTCTGACGAGATTGGAACTCCAAGGTACTCTGATGAGAAGATCTTTTACTGAACCTTCTTTTGGGCTCTCTCTCCCATCCTCTCTTTGGGTGGTGTGAGATTGCCAAGGCCAGTCAGTTTTTTTTTTTTGGTGGGGGTGGTGGGTGGCGGTAAATTATTTGGTTGGACTGGTGATCCTGTAAAGGTGATTATTTTGCTTCTATTTTCATCATCAACTCCTTCGTTGTTTGTTATTTGATGTTGTTCATATTAAGTGGAAGGATATCGTCTTCTCTTATTACTGCTTTCATCTTTTTTTGCAAACACATGCTCTCTTTGATTGGATATTCAAGTTGTAACCACCACTTGCTTTCTTTTTGTTTAAACACATTGCAGAATTTAGGATTAGATACAGTGGGAGTGAAAATGACAAAGAACGGAGCCATAGAGGTGACTGCCTTTCTGCCTTCCTCTCTCTTTTTTTTTTCCGAATTTGCTTTAACTATTTAGTGCATGTGTTCTTGAATGAGAGTTTAATTTGCAAATTGTTTTTACAGGTTGACGAGTATTCTCGTACATCAGTGCCATCAATTTGGGCAGTTGGAGATGTTACTGATAGAATTAATCTAACTCCAGTTGCTTTGATGGAGGGAGGAGCATTGGCAAAAACTATTTTTGCTGGTGAACCCACAAAACCTGATTATAGGTACCTCTTCTTTCTTCTGTGAATTCATTTGATGACTTAAAAAGTTTGACAAGGACTGCCGAAGATGCACACTTCTCCAATTATTTTTTACTACAAATTGGTAATGTGCTTTGAGATCTGTGGTTCTACCATGTAAAATGCATAAGCTCTCACAGCTGAATTTTAATTTGTTTAAAAAGAAACATCTATAGCTGCTCCCTGATCTGAGTGTTCTGTTCTCCCAAATAGGAACGTACCATGTGCAGTATTTTCCCAGCCACCTATTGGACTAGTTGGCCTGAC</genome_strand>
        <mrna_strand>TGGAAGCGAGTATGCTATAGATTCTGATGCTGCCCTTGATTTGCCAACGAAGCCTGACAAAATTGCCATTGTTGGAGGCGGTTATATTGCACTTGAATTTGCTGGAATCTTCAATGGATTGAAAAGTGAGGTCCATGTATTTATACGACAAAAGAAGGTTTTGAGAGGCTTTGATGAAGAA....................................................................................................ATTAGGGATTTTGTTGGTGAACAGATGTCACTGAGAGGCATTGAGTTCCATACCGAGGAGTCGCCTCAGGCTATTGTCAAGTCAGCAGATGGTTCACTGTCTATAAAGACTAACAGAGGAACAGTTGAAGGTTTCTCTCATATCATGTTTGCAACAGGACGAAGTCCAAATACTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTAGGATTAGATACAGTGGGAGTGAAAATGACAAAGAACGGAGCCATAGAG...........................................................................................................GTTGACGAGTATTCTCGTACATCAGTGCCATCAATTTGGGCAGTTGGAGATGTTACTGATAGAATTAATCTAACTCCAGTTGCTTTGATGGAGGGAGGAGCATTGGCAAAAACTATTTTTGCTGGTGAACCCACAAAACCTGATTATAN....................................................................................................................................................................................................................................GAACGTACCATGTGCAGTATTTTCCCAGCCACCTATTGGACTAGTTGGCCTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E318271" ref_strand="+" ref_description="SGN-E318271 [cTOA-29-B1]">
      <seq>tctgatagaagggcggggaaaggtggtggatcctcatacagtggatgtggatggtaaactctactcggctaagaacatactaatttcagttgggggccgcccatttatcccagacattcctggaagcgagtatgctatagattctgatgctgcccttgatttgccaacgaagcctgacaaaattgccattgttggaggcggttatattgcacttgaatttgctggaatcttcaatggattgaaaagtgaggtccatgtatttatacgacaaaagaaggttttgagaggctttgatgaagaaattagggattttgttggtgaacagatgtcactgagaggcattgagttccataccgaggagtcgcctcaggctattgtcaagtcagcagatggttcactgtctataaagactaacagaggaacagttgaaggtttctctcatatcatgtttgcaacaggacgaagtccaaatactaagaatttaggattagatacagtgggagtgaaaatgacaaagaacggagccatagaggttgacgagtattctcgtacatcagtgccatcaatttgggcagttggagatgttactgatagaattaatctaactccagttgctttgatggagggaggagcattggcaaaactatttttgctggtgaaccacaaacctgattataggaacgtaccatgtgcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="19210" stop="16789"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18910" g_stop="18889" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18888" i_stop="18805" i_length="84">
            <donor d_prob="0.220" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18804" g_stop="18526" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="301" r_length="279" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18525" i_stop="18426" i_length="100">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18425" g_stop="18249" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="478" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18248" i_stop="17644" i_length="605">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17643" g_stop="17590" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="532" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17589" i_stop="17483" i_length="107">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17482" g_stop="17334" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="678" r_length="146" r_score="0.980"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17333" i_stop="17106" i_length="228">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.125" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17105" g_stop="17089" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="679" r_stop="695" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E318271" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318271" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18910" e_stop="18889"/>
          <exon e_start="18804" e_stop="18526"/>
          <exon e_start="18425" e_stop="18249"/>
          <exon e_start="17643" e_stop="17590"/>
          <exon e_start="17482" e_stop="17334"/>
          <exon e_start="17105" e_stop="17089"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGATAGAAGGGCGGGGAAAGGTTGGGAAATGTTAGGATTTGAATTTCATGCTCTTTAAGGCTTCAAGTTGAAGCATATTACCTTGTGTTCGACTGTACTTTCAGGTGGTGGATCCTCATACAGTGGATGTGGATGGTAAACTCTACTCGGCTAAGAACATACTAATTTCAGTTGGGGGCCGCCCATTTATCCCAGACATTCCTGGAAGCGAGTATGCTATAGATTCTGATGCTGCCCTTGATTTGCCAACGAAGCCTGACAAAATTGCCATTGTTGGAGGCGGTTATATTGCACTTGAATTTGCTGGAATCTTCAATGGATTGAAAAGTGAGGTCCATGTATTTATACGACAAAAGAAGGTTTTGAGAGGCTTTGATGAAGAAGTGAGTAATTTATCCCTGACATGCAGAGTAGATTCTGTTAAGTATATTCTCTCATAACCCAAAATCTGGATGATGCACTCAACTTCTTTTGTATATGCAGATTAGGGATTTTGTTGGTGAACAGATGTCACTGAGAGGCATTGAGTTCCATACCGAGGAGTCGCCTCAGGCTATTGTCAAGTCAGCAGATGGTTCACTGTCTATAAAGACTAACAGAGGAACAGTTGAAGGTTTCTCTCATATCATGTTTGCAACAGGACGAAGTCCAAATACTAAGGTTTATTCTGCTTTCTGTTGGTAGCTTATATCTCTGATAGACCTCATAGGTTAATTCAGTTAATTACTATGTTTGAAGCCTTATGGAGGAAGAGCATGGTGATTTCTCCTCTATAGTCTAGCCAATCATTCTCCCTCCCCCCAAAATTGGCAATACTAAACCCAAAACCCTGTGATGCCTGTGAAAGGCTGAAAGTTTGCTAACATTTAGCGCAGTGGAAATCCAAGGTACTCTGACGAGATTGGAACTCCAAGGTACTCTGATGAGAAGATCTTTTACTGAACCTTCTTTTGGGCTCTCTCTCCCATCCTCTCTTTGGGTGGTGTGAGATTGCCAAGGCCAGTCAGTTTTTTTTTTTTGGTGGGGGTGGTGGGTGGCGGTAAATTATTTGGTTGGACTGGTGATCCTGTAAAGGTGATTATTTTGCTTCTATTTTCATCATCAACTCCTTCGTTGTTTGTTATTTGATGTTGTTCATATTAAGTGGAAGGATATCGTCTTCTCTTATTACTGCTTTCATCTTTTTTTGCAAACACATGCTCTCTTTGATTGGATATTCAAGTTGTAACCACCACTTGCTTTCTTTTTGTTTAAACACATTGCAGAATTTAGGATTAGATACAGTGGGAGTGAAAATGACAAAGAACGGAGCCATAGAGGTGACTGCCTTTCTGCCTTCCTCTCTCTTTTTTTTTTCCGAATTTGCTTTAACTATTTAGTGCATGTGTTCTTGAATGAGAGTTTAATTTGCAAATTGTTTTTACAGGTTGACGAGTATTCTCGTACATCAGTGCCATCAATTTGGGCAGTTGGAGATGTTACTGATAGAATTAATCTAACTCCAGTTGCTTTGATGGAGGGAGGAGCATTGGCAAAAACTATTTTTGCTGGTGAACCCACAAAACCTGATTATAGGTACCTCTTCTTTCTTCTGTGAATTCATTTGATGACTTAAAAAGTTTGACAAGGACTGCCGAAGATGCACACTTCTCCAATTATTTTTTACTACAAATTGGTAATGTGCTTTGAGATCTGTGGTTCTACCATGTAAAATGCATAAGCTCTCACAGCTGAATTTTAATTTGTTTAAAAAGAAACATCTATAGCTGCTCCCTGATCTGAGTGTTCTGTTCTCCCAAATAGGAACGTACCATGTGCAG</genome_strand>
        <mrna_strand>TCTGATAGAAGGGCGGGGAAAG....................................................................................GTGGTGGATCCTCATACAGTGGATGTGGATGGTAAACTCTACTCGGCTAAGAACATACTAATTTCAGTTGGGGGCCGCCCATTTATCCCAGACATTCCTGGAAGCGAGTATGCTATAGATTCTGATGCTGCCCTTGATTTGCCAACGAAGCCTGACAAAATTGCCATTGTTGGAGGCGGTTATATTGCACTTGAATTTGCTGGAATCTTCAATGGATTGAAAAGTGAGGTCCATGTATTTATACGACAAAAGAAGGTTTTGAGAGGCTTTGATGAAGAA....................................................................................................ATTAGGGATTTTGTTGGTGAACAGATGTCACTGAGAGGCATTGAGTTCCATACCGAGGAGTCGCCTCAGGCTATTGTCAAGTCAGCAGATGGTTCACTGTCTATAAAGACTAACAGAGGAACAGTTGAAGGTTTCTCTCATATCATGTTTGCAACAGGACGAAGTCCAAATACTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTAGGATTAGATACAGTGGGAGTGAAAATGACAAAGAACGGAGCCATAGAG...........................................................................................................GTTGACGAGTATTCTCGTACATCAGTGCCATCAATTTGGGCAGTTGGAGATGTTACTGATAGAATTAATCTAACTCCAGTTGCTTTGATGGAGGGAGGAGCATTGGC-AAAACTATTTTTGCTGGTGAA-CCAC-AAACCTGATTATAG....................................................................................................................................................................................................................................GAACGTACCATGTGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E235953" ref_strand="+" ref_description="SGN-E235953 [cLED-16-E19]">
      <seq>ttcaatggattgaaaagtgaggtccatgtatttatacgacaaaagaaggttttgagaggctttgatgaagaaattagggattttgttggtgaacagatgtcactgagaggcattgagttccataccgaggagtcgcctcaggctattgtcaagtcagcagatggttcactgtctataaagactaacagaggaacagttgaaggtttctctcatatcatgtttgcaacaggacgaagtccaaatactaagaatttaggattagatacagtgggagtgaaaatgacaaagaacggagccatagaggttgacgagtattctcgtacatcagtgccatcaatttgggcagttggagatgttactgatagaattaatctaactccagttgctttgatggaggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="18897" stop="17087"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18597" g_stop="18526" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18525" i_stop="18426" i_length="100">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18425" g_stop="18249" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="249" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18248" i_stop="17644" i_length="605">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17643" g_stop="17590" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="303" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17589" i_stop="17483" i_length="107">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17482" g_stop="17387" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="399" r_length="96" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E235953" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>399</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235953" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18597" e_stop="18526"/>
          <exon e_start="18425" e_stop="18249"/>
          <exon e_start="17643" e_stop="17590"/>
          <exon e_start="17482" e_stop="17387"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAATGGATTGAAAAGTGAGGTCCATGTATTTATACGACAAAAGAAGGTTTTGAGAGGCTTTGATGAAGAAGTGAGTAATTTATCCCTGACATGCAGAGTAGATTCTGTTAAGTATATTCTCTCATAACCCAAAATCTGGATGATGCACTCAACTTCTTTTGTATATGCAGATTAGGGATTTTGTTGGTGAACAGATGTCACTGAGAGGCATTGAGTTCCATACCGAGGAGTCGCCTCAGGCTATTGTCAAGTCAGCAGATGGTTCACTGTCTATAAAGACTAACAGAGGAACAGTTGAAGGTTTCTCTCATATCATGTTTGCAACAGGACGAAGTCCAAATACTAAGGTTTATTCTGCTTTCTGTTGGTAGCTTATATCTCTGATAGACCTCATAGGTTAATTCAGTTAATTACTATGTTTGAAGCCTTATGGAGGAAGAGCATGGTGATTTCTCCTCTATAGTCTAGCCAATCATTCTCCCTCCCCCCAAAATTGGCAATACTAAACCCAAAACCCTGTGATGCCTGTGAAAGGCTGAAAGTTTGCTAACATTTAGCGCAGTGGAAATCCAAGGTACTCTGACGAGATTGGAACTCCAAGGTACTCTGATGAGAAGATCTTTTACTGAACCTTCTTTTGGGCTCTCTCTCCCATCCTCTCTTTGGGTGGTGTGAGATTGCCAAGGCCAGTCAGTTTTTTTTTTTTGGTGGGGGTGGTGGGTGGCGGTAAATTATTTGGTTGGACTGGTGATCCTGTAAAGGTGATTATTTTGCTTCTATTTTCATCATCAACTCCTTCGTTGTTTGTTATTTGATGTTGTTCATATTAAGTGGAAGGATATCGTCTTCTCTTATTACTGCTTTCATCTTTTTTTGCAAACACATGCTCTCTTTGATTGGATATTCAAGTTGTAACCACCACTTGCTTTCTTTTTGTTTAAACACATTGCAGAATTTAGGATTAGATACAGTGGGAGTGAAAATGACAAAGAACGGAGCCATAGAGGTGACTGCCTTTCTGCCTTCCTCTCTCTTTTTTTTTTCCGAATTTGCTTTAACTATTTAGTGCATGTGTTCTTGAATGAGAGTTTAATTTGCAAATTGTTTTTACAGGTTGACGAGTATTCTCGTACATCAGTGCCATCAATTTGGGCAGTTGGAGATGTTACTGATAGAATTAATCTAACTCCAGTTGCTTTGATGGAGGGA</genome_strand>
        <mrna_strand>TTCAATGGATTGAAAAGTGAGGTCCATGTATTTATACGACAAAAGAAGGTTTTGAGAGGCTTTGATGAAGAA....................................................................................................ATTAGGGATTTTGTTGGTGAACAGATGTCACTGAGAGGCATTGAGTTCCATACCGAGGAGTCGCCTCAGGCTATTGTCAAGTCAGCAGATGGTTCACTGTCTATAAAGACTAACAGAGGAACAGTTGAAGGTTTCTCTCATATCATGTTTGCAACAGGACGAAGTCCAAATACTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTAGGATTAGATACAGTGGGAGTGAAAATGACAAAGAACGGAGCCATAGAG...........................................................................................................GTTGACGAGTATTCTCGTACATCAGTGCCATCAATTTGGGCAGTTGGAGATGTTACTGATAGAATTAATCTAACTCCAGTTGCTTTGATGGAGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E214676" ref_strand="+" ref_description="SGN-E214676 [cLEC-79-B21]">
      <seq>agaacctaaacatgattggagcaccctcattgctaataaaaatgccgagttgcagcgcctcacgggtatctacaagaatattctgaagaatgcggatgtcactctgatagaagggcggggaaaggtggtggatcctcatacagtggatgtggatggtaaactctactcggctaagaacatactaatttcagttgggggccgcccatttatcccagacattcctggaagcgagtatgctatagattctgatgctgcccttgatttgccaacgaagcctgacaaaattgccattgttggaggcggttatattgcacttgaatttgctggaatcttcaatggattgaaaagtgaggtccatgtatttatacgacaaaagaaggttttgagaggctttgatgaagaaattagggattttgttggtgaacagatgtcactgagaggcattgagttccataccgaggagtcgcctcaggctattgtcaagtcagcagatggttcactgtctataaagactaacagaggaacagttgaaggtttctctcatatcatgtttgcaacaggacgaagtccaaatactaagaatttaggattagatacagtggggagtgaaaatgacaaagaacggagccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="19312" stop="17294"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19012" g_stop="18889" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18888" i_stop="18805" i_length="84">
            <donor d_prob="0.220" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18804" g_stop="18526" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="403" r_length="279" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18525" i_stop="18426" i_length="100">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18425" g_stop="18249" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="580" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18248" i_stop="17644" i_length="605">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17643" g_stop="17594" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="631" r_length="51" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E214676" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214676" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19012" e_stop="18889"/>
          <exon e_start="18804" e_stop="18526"/>
          <exon e_start="18425" e_stop="18249"/>
          <exon e_start="17643" e_stop="17594"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAACCTAAACATGATTGGAGCACCCTCATTGCTAATAAAAATGCCGAGTTGCAGCGCCTCACGGGTATCTACAAGAATATTCTGAAGAATGCGGATGTCACTCTGATAGAAGGGCGGGGAAAGGTTGGGAAATGTTAGGATTTGAATTTCATGCTCTTTAAGGCTTCAAGTTGAAGCATATTACCTTGTGTTCGACTGTACTTTCAGGTGGTGGATCCTCATACAGTGGATGTGGATGGTAAACTCTACTCGGCTAAGAACATACTAATTTCAGTTGGGGGCCGCCCATTTATCCCAGACATTCCTGGAAGCGAGTATGCTATAGATTCTGATGCTGCCCTTGATTTGCCAACGAAGCCTGACAAAATTGCCATTGTTGGAGGCGGTTATATTGCACTTGAATTTGCTGGAATCTTCAATGGATTGAAAAGTGAGGTCCATGTATTTATACGACAAAAGAAGGTTTTGAGAGGCTTTGATGAAGAAGTGAGTAATTTATCCCTGACATGCAGAGTAGATTCTGTTAAGTATATTCTCTCATAACCCAAAATCTGGATGATGCACTCAACTTCTTTTGTATATGCAGATTAGGGATTTTGTTGGTGAACAGATGTCACTGAGAGGCATTGAGTTCCATACCGAGGAGTCGCCTCAGGCTATTGTCAAGTCAGCAGATGGTTCACTGTCTATAAAGACTAACAGAGGAACAGTTGAAGGTTTCTCTCATATCATGTTTGCAACAGGACGAAGTCCAAATACTAAGGTTTATTCTGCTTTCTGTTGGTAGCTTATATCTCTGATAGACCTCATAGGTTAATTCAGTTAATTACTATGTTTGAAGCCTTATGGAGGAAGAGCATGGTGATTTCTCCTCTATAGTCTAGCCAATCATTCTCCCTCCCCCCAAAATTGGCAATACTAAACCCAAAACCCTGTGATGCCTGTGAAAGGCTGAAAGTTTGCTAACATTTAGCGCAGTGGAAATCCAAGGTACTCTGACGAGATTGGAACTCCAAGGTACTCTGATGAGAAGATCTTTTACTGAACCTTCTTTTGGGCTCTCTCTCCCATCCTCTCTTTGGGTGGTGTGAGATTGCCAAGGCCAGTCAGTTTTTTTTTTTTGGTGGGGGTGGTGGGTGGCGGTAAATTATTTGGTTGGACTGGTGATCCTGTAAAGGTGATTATTTTGCTTCTATTTTCATCATCAACTCCTTCGTTGTTTGTTATTTGATGTTGTTCATATTAAGTGGAAGGATATCGTCTTCTCTTATTACTGCTTTCATCTTTTTTTGCAAACACATGCTCTCTTTGATTGGATATTCAAGTTGTAACCACCACTTGCTTTCTTTTTGTTTAAACACATTGCAGAATTTAGGATTAGATACAGT-GGGAGTGAAAATGACAAAGAACGGAGCCAT</genome_strand>
        <mrna_strand>AGAACCTAAACATGATTGGAGCACCCTCATTGCTAATAAAAATGCCGAGTTGCAGCGCCTCACGGGTATCTACAAGAATATTCTGAAGAATGCGGATGTCACTCTGATAGAAGGGCGGGGAAAG....................................................................................GTGGTGGATCCTCATACAGTGGATGTGGATGGTAAACTCTACTCGGCTAAGAACATACTAATTTCAGTTGGGGGCCGCCCATTTATCCCAGACATTCCTGGAAGCGAGTATGCTATAGATTCTGATGCTGCCCTTGATTTGCCAACGAAGCCTGACAAAATTGCCATTGTTGGAGGCGGTTATATTGCACTTGAATTTGCTGGAATCTTCAATGGATTGAAAAGTGAGGTCCATGTATTTATACGACAAAAGAAGGTTTTGAGAGGCTTTGATGAAGAA....................................................................................................ATTAGGGATTTTGTTGGTGAACAGATGTCACTGAGAGGCATTGAGTTCCATACCGAGGAGTCGCCTCAGGCTATTGTCAAGTCAGCAGATGGTTCACTGTCTATAAAGACTAACAGAGGAACAGTTGAAGGTTTCTCTCATATCATGTTTGCAACAGGACGAAGTCCAAATACTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTAGGATTAGATACAGTGGGGAGTGAAAATGACAAAGAACGGAGCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E317129" ref_strand="+" ref_description="SGN-E317129 [cTOA-27-F24]">
      <seq>ctgtttgtgagcttcctttctctactatatcttctgattcaactggaggcgtcggtggcacgtgtgtgcttcggggatgtgtacccaagaaattgctcgtatatgcatcaaaatattctcatgagtttgaggagagttgtggttttggatggaactatgaggcagaacctaaacatgattggagcaccctcattgctaataaaaatgccgagttgcagcgcctcacgggtatctacaagaatattctgaagaatgcggatgtcactctgatagaagggcggggaaaggtggtggatcctcatacagtggatgtggatggtaaactctactcggctaagaacatactaatttcagttgggggccgcccatttatcccagacattcctggaagcgagtatgctatagattctgatgctgcccttgatttgccaacgaagcctgacaaaattgccattgttggaggcggttatattgcacttgaatttgctggaatcttcaatggattgaaaagtgaggtccatgtatttatacgacaaaagaaggttttgagaggctttgatgaagaaattagggattttgttggtgaacagatgtcactgagaggcattgagttccataccgaggagtcgcctcaggctattgtcaagtcagcagatggttcactgtctataaagactaacagaggaacagttgaaggtttctctcatatcatgtttgcaacaggacgaagtcaaatacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="20768" stop="17951"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20468" g_stop="20408" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20407" i_stop="19115" i_length="1293">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19114" g_stop="18889" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="287" r_length="226" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18888" i_stop="18805" i_length="84">
            <donor d_prob="0.220" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18804" g_stop="18526" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="566" r_length="279" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18525" i_stop="18426" i_length="100">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18425" g_stop="18251" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="740" r_length="174" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E317129" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317129" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20468" e_stop="20408"/>
          <exon e_start="19114" e_stop="18889"/>
          <exon e_start="18804" e_stop="18526"/>
          <exon e_start="18425" e_stop="18251"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTTTGTGAGCTTCCTTTCTCTACTATATCTTCTGATTCAACTGGAGGCGTCGGTGGCACGTGAGTCTTTCATTATAGTGAACCTTTTTTATTTGGTTGTGAAAAAATGTCATCTTTAGTTTTTTCCTACTTTTATCTGGGGAATTAGGTGAAGGAGAATCAACAAATTGTTGAATTAGAGAAAAGTGTAGAAGATGGGCGATTTTTAACTGTTCTATTTGTCTCAAATATGTTTTAAGCTAAAGTGTAATGTTGTTTTATGATATTGTTGCTAAAGTTTCTGAATTGATCGAACTGGATGAGCTATGTGATTCATAGGAAAAACTGCAGCTTTACTATGGATTCCAGGATCATTTCGCGGAAGGTCCTGATATCAAAATCGTGCATATTTCTCTAGAGAGAGTGGGATTGTTTTTCAGAAACTAGACTATGATTATCATTAATATAAGAAAATAGTATGTACAGTAAGGTTGTAAATGCCTGTGATGTTATCATTTCTTTTTACCAGCTTCTTAACATGAAGCTTGTAAACAAATGGAATTGAATGGAATTGACTTAGGTGAAAGAATATGCATGTTGCGTGTACGTTGCATGATGAGTGATGTTCATTCTATGTACAAAAAGTCCATTTTCATATCGATGGGGCTAGCCTTTATGGGCCTAAACAACATCCTATTGTACTCAAAATTGTTCTCTAAAAGCTCGGCTTGTTCTCGATAATACTGTGGTAGTTGATTGTCTCCTTTTCACATCAACTGCCCGCCTTGATTCTGCATTGGCTAACCACGTTTACCTTCAAGTGAAGTTTTCTTCTGCCATTCTCTACGGAAAAGCGGTTACTTGACCAAGTCGTTATATGGTAAAACCATATATGACTTGGTCAGGCACAGTAATTATTCTATCTTATCCAATCTTTGGAGATGGATAGAAAAAATGAGTGATTTAAATCACCATTTATATCTTGAAGTATCTATATAACTTTTAGAAAACTGTAAACAAAGAAAGAATTGTGAGATTCCCTCGATCTCTCCATTTCATTTTATATGACTGTATTTGTCTTGTAGTAGTGATATTGGAGAAATATATTGTAATAATGGTTGAAAGCTAGTTTAACAGTGAAAAGTGAAAACATCCCACATCAAATTTTAAAATCAGAATAGTTTAATGTGTTGAATTCTTGATAAATGTGAACGTTGTATGGAAATAGATTGGTGTTCAAACATTATGGGACATCCCAAAATGAAAAGAATGTCATATAACTTAGAACCAGGGGAGAAATAATTTCATATGAAGTGTAACATAAACAGTAATGTTTCTATTAAGTGTAATCATTTCTTGATTTCTCTAATGAAGGTGTGTGCTTCGGGGATGTGTACCCAAGAAATTGCTCGTATATGCATCAAAATATTCTCATGAGTTTGAGGAGAGTTGTGGTTTTGGATGGAACTATGAGGCAGAACCTAAACATGATTGGAGCACCCTCATTGCTAATAAAAATGCCGAGTTGCAGCGCCTCACGGGTATCTACAAGAATATTCTGAAGAATGCGGATGTCACTCTGATAGAAGGGCGGGGAAAGGTTGGGAAATGTTAGGATTTGAATTTCATGCTCTTTAAGGCTTCAAGTTGAAGCATATTACCTTGTGTTCGACTGTACTTTCAGGTGGTGGATCCTCATACAGTGGATGTGGATGGTAAACTCTACTCGGCTAAGAACATACTAATTTCAGTTGGGGGCCGCCCATTTATCCCAGACATTCCTGGAAGCGAGTATGCTATAGATTCTGATGCTGCCCTTGATTTGCCAACGAAGCCTGACAAAATTGCCATTGTTGGAGGCGGTTATATTGCACTTGAATTTGCTGGAATCTTCAATGGATTGAAAAGTGAGGTCCATGTATTTATACGACAAAAGAAGGTTTTGAGAGGCTTTGATGAAGAAGTGAGTAATTTATCCCTGACATGCAGAGTAGATTCTGTTAAGTATATTCTCTCATAACCCAAAATCTGGATGATGCACTCAACTTCTTTTGTATATGCAGATTAGGGATTTTGTTGGTGAACAGATGTCACTGAGAGGCATTGAGTTCCATACCGAGGAGTCGCCTCAGGCTATTGTCAAGTCAGCAGATGGTTCACTGTCTATAAAGACTAACAGAGGAACAGTTGAAGGTTTCTCTCATATCATGTTTGCAACAGGACGAAGTCCAAATACTA</genome_strand>
        <mrna_strand>CTGTTTGTGAGCTTCCTTTCTCTACTATATCTTCTGATTCAACTGGAGGCGTCGGTGGCAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTGCTTCGGGGATGTGTACCCAAGAAATTGCTCGTATATGCATCAAAATATTCTCATGAGTTTGAGGAGAGTTGTGGTTTTGGATGGAACTATGAGGCAGAACCTAAACATGATTGGAGCACCCTCATTGCTAATAAAAATGCCGAGTTGCAGCGCCTCACGGGTATCTACAAGAATATTCTGAAGAATGCGGATGTCACTCTGATAGAAGGGCGGGGAAAG....................................................................................GTGGTGGATCCTCATACAGTGGATGTGGATGGTAAACTCTACTCGGCTAAGAACATACTAATTTCAGTTGGGGGCCGCCCATTTATCCCAGACATTCCTGGAAGCGAGTATGCTATAGATTCTGATGCTGCCCTTGATTTGCCAACGAAGCCTGACAAAATTGCCATTGTTGGAGGCGGTTATATTGCACTTGAATTTGCTGGAATCTTCAATGGATTGAAAAGTGAGGTCCATGTATTTATACGACAAAAGAAGGTTTTGAGAGGCTTTGATGAAGAA....................................................................................................ATTAGGGATTTTGTTGGTGAACAGATGTCACTGAGAGGCATTGAGTTCCATACCGAGGAGTCGCCTCAGGCTATTGTCAAGTCAGCAGATGGTTCACTGTCTATAAAGACTAACAGAGGAACAGTTGAAGGTTTCTCTCATATCATGTTTGCAACAGGACGAAGT-CAAATACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E370880" ref_strand="+" ref_description="SGN-E370880 [TUS-27-P11]">
      <seq>aaatttattccgccatggctacatctttgagctcaccaaagctcagtacaactctttcttctccaactttccattctctttacaagaccaaattctctaatttctctcttctttctctctctaaccctatcaagcctctccgcttcaattttctctctcatacccgtacctcatcattatcttatggccgccgtttcactactcctcgtgctgagtcatctaatggagctgaaactcctcggcattacgatttcgatttattcactataggtgctggtagtggtggcgttagggcttctcgttttgcttctaattttggggcttcggttgctgtttgtgagcttcctttctctactatatcttctgattcaactggaggcgtcggtggcacgtgtgtgcttcggggatgtgtacccaagaaattgctcgtatatgcatcaaaatattctcatgagtttgaggagagttgtggttttggatggaactatgaggcagaacctaaacatgattggagcaccctcattgctaataaaaatgccgagttgcagcgcctcacgggtatctacaagaatattctgaagaatgcggatgtcactctgatagaagggcggngaaaggtggtggatcctcatacaggggatgtggatgggtaactctactcggctaaaaacatactaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="21098" stop="18442"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20798" g_stop="20408" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="391" r_length="391" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20407" i_stop="19115" i_length="1293">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19114" g_stop="18889" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="617" r_length="226" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18888" i_stop="18805" i_length="84">
            <donor d_prob="0.220" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18804" g_stop="18742" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="618" r_stop="680" r_length="63" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E370880" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370880" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20798" e_stop="20408"/>
          <exon e_start="19114" e_stop="18889"/>
          <exon e_start="18804" e_stop="18742"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTTATTCCGCCATGGCTACATCTTTGAGCTCACCAAAGCTCAGTACAACTCTTTCTTCTCCAACTTTCCATTCTCTTTACAAGACCAAATTCTCTAATTTCTCTCTTCTTTCTCTCTCTAACCCTATCAAGCCTCTCCGCTTCAATTTTCTCTCTCATACCCGTACCTCATCATTATCTTATGGCCGCCGTTTCACTACTCCTCGTGCTGAGTCATCTAATGGAGCTGAAACTCCTCGGCATTACGATTTCGATTTATTCACTATAGGTGCTGGTAGTGGTGGCGTTAGGGCTTCTCGTTTTGCTTCTAATTTTGGGGCTTCGGTTGCTGTTTGTGAGCTTCCTTTCTCTACTATATCTTCTGATTCAACTGGAGGCGTCGGTGGCACGTGAGTCTTTCATTATAGTGAACCTTTTTTATTTGGTTGTGAAAAAATGTCATCTTTAGTTTTTTCCTACTTTTATCTGGGGAATTAGGTGAAGGAGAATCAACAAATTGTTGAATTAGAGAAAAGTGTAGAAGATGGGCGATTTTTAACTGTTCTATTTGTCTCAAATATGTTTTAAGCTAAAGTGTAATGTTGTTTTATGATATTGTTGCTAAAGTTTCTGAATTGATCGAACTGGATGAGCTATGTGATTCATAGGAAAAACTGCAGCTTTACTATGGATTCCAGGATCATTTCGCGGAAGGTCCTGATATCAAAATCGTGCATATTTCTCTAGAGAGAGTGGGATTGTTTTTCAGAAACTAGACTATGATTATCATTAATATAAGAAAATAGTATGTACAGTAAGGTTGTAAATGCCTGTGATGTTATCATTTCTTTTTACCAGCTTCTTAACATGAAGCTTGTAAACAAATGGAATTGAATGGAATTGACTTAGGTGAAAGAATATGCATGTTGCGTGTACGTTGCATGATGAGTGATGTTCATTCTATGTACAAAAAGTCCATTTTCATATCGATGGGGCTAGCCTTTATGGGCCTAAACAACATCCTATTGTACTCAAAATTGTTCTCTAAAAGCTCGGCTTGTTCTCGATAATACTGTGGTAGTTGATTGTCTCCTTTTCACATCAACTGCCCGCCTTGATTCTGCATTGGCTAACCACGTTTACCTTCAAGTGAAGTTTTCTTCTGCCATTCTCTACGGAAAAGCGGTTACTTGACCAAGTCGTTATATGGTAAAACCATATATGACTTGGTCAGGCACAGTAATTATTCTATCTTATCCAATCTTTGGAGATGGATAGAAAAAATGAGTGATTTAAATCACCATTTATATCTTGAAGTATCTATATAACTTTTAGAAAACTGTAAACAAAGAAAGAATTGTGAGATTCCCTCGATCTCTCCATTTCATTTTATATGACTGTATTTGTCTTGTAGTAGTGATATTGGAGAAATATATTGTAATAATGGTTGAAAGCTAGTTTAACAGTGAAAAGTGAAAACATCCCACATCAAATTTTAAAATCAGAATAGTTTAATGTGTTGAATTCTTGATAAATGTGAACGTTGTATGGAAATAGATTGGTGTTCAAACATTATGGGACATCCCAAAATGAAAAGAATGTCATATAACTTAGAACCAGGGGAGAAATAATTTCATATGAAGTGTAACATAAACAGTAATGTTTCTATTAAGTGTAATCATTTCTTGATTTCTCTAATGAAGGTGTGTGCTTCGGGGATGTGTACCCAAGAAATTGCTCGTATATGCATCAAAATATTCTCATGAGTTTGAGGAGAGTTGTGGTTTTGGATGGAACTATGAGGCAGAACCTAAACATGATTGGAGCACCCTCATTGCTAATAAAAATGCCGAGTTGCAGCGCCTCACGGGTATCTACAAGAATATTCTGAAGAATGCGGATGTCACTCTGATAGAAGGGCGGGGAAAGGTTGGGAAATGTTAGGATTTGAATTTCATGCTCTTTAAGGCTTCAAGTTGAAGCATATTACCTTGTGTTCGACTGTACTTTCAGGTGGTGGATCCTCATACAGTGGATGTGGATGGTAAACTCTACTCGGCTAAGAACATACTAATT</genome_strand>
        <mrna_strand>AAATTTATTCCGCCATGGCTACATCTTTGAGCTCACCAAAGCTCAGTACAACTCTTTCTTCTCCAACTTTCCATTCTCTTTACAAGACCAAATTCTCTAATTTCTCTCTTCTTTCTCTCTCTAACCCTATCAAGCCTCTCCGCTTCAATTTTCTCTCTCATACCCGTACCTCATCATTATCTTATGGCCGCCGTTTCACTACTCCTCGTGCTGAGTCATCTAATGGAGCTGAAACTCCTCGGCATTACGATTTCGATTTATTCACTATAGGTGCTGGTAGTGGTGGCGTTAGGGCTTCTCGTTTTGCTTCTAATTTTGGGGCTTCGGTTGCTGTTTGTGAGCTTCCTTTCTCTACTATATCTTCTGATTCAACTGGAGGCGTCGGTGGCAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTGCTTCGGGGATGTGTACCCAAGAAATTGCTCGTATATGCATCAAAATATTCTCATGAGTTTGAGGAGAGTTGTGGTTTTGGATGGAACTATGAGGCAGAACCTAAACATGATTGGAGCACCCTCATTGCTAATAAAAATGCCGAGTTGCAGCGCCTCACGGGTATCTACAAGAATATTCTGAAGAATGCGGATGTCACTCTGATAGAAGGGCGGNGAAAG....................................................................................GTGGTGGATCCTCATACAGGGGATGTGGATGGGTAACTCTACTCGGCTAAAAACATACTAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E379310" ref_strand="+" ref_description="SGN-E379310 [TUS-1-G24]">
      <seq>aaaaaagaaaaaaaacagagaaatttattccgccatggctacatctttgagctcaccaaagctcagtacaactctttcttctccaactttccattctctttacaagaccaaattctctaatttctctcttctttctctctctaaccctatcaagcctctccgcttcaattttctctctcatacccgtacctcatcattatcttatggccgccgtttcactactcctcgtgctgagtcatctaatggagctgaaactcctcggcattacgatttcgatttattcactataggtgctggtagtggtggcgttagggcttctcgttttgcttctaattttggggcttcggttgctgtttgtgagcttcctttctctactatatcttctgattcaactggaggcgtcggtggcacgtgtgtgcttcggggatgtgtacccaagaaattgctcgtatatgcatcaaaatattctcatgagtttgaggagagttgtggttttggatggaactatgaggcagaacctaaacatgattggagcaccctcattgctaataaaaatgccgagttgcagcgcctcacgggtatctacaagaatattctgaagaatgcggatgtcactctgatagaagggcggggaaaggtggtggatcctcatacagtggatgtggatggtaaactctactcggcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="21118" stop="18456"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20818" g_stop="20408" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="411" r_length="411" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20407" i_stop="19115" i_length="1293">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19114" g_stop="18889" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="637" r_length="226" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18888" i_stop="18805" i_length="84">
            <donor d_prob="0.220" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18804" g_stop="18756" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="686" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E379310" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379310" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20818" e_stop="20408"/>
          <exon e_start="19114" e_stop="18889"/>
          <exon e_start="18804" e_stop="18756"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAGAAAAAAAACAGAGAAATTTATTCCGCCATGGCTACATCTTTGAGCTCACCAAAGCTCAGTACAACTCTTTCTTCTCCAACTTTCCATTCTCTTTACAAGACCAAATTCTCTAATTTCTCTCTTCTTTCTCTCTCTAACCCTATCAAGCCTCTCCGCTTCAATTTTCTCTCTCATACCCGTACCTCATCATTATCTTATGGCCGCCGTTTCACTACTCCTCGTGCTGAGTCATCTAATGGAGCTGAAACTCCTCGGCATTACGATTTCGATTTATTCACTATAGGTGCTGGTAGTGGTGGCGTTAGGGCTTCTCGTTTTGCTTCTAATTTTGGGGCTTCGGTTGCTGTTTGTGAGCTTCCTTTCTCTACTATATCTTCTGATTCAACTGGAGGCGTCGGTGGCACGTGAGTCTTTCATTATAGTGAACCTTTTTTATTTGGTTGTGAAAAAATGTCATCTTTAGTTTTTTCCTACTTTTATCTGGGGAATTAGGTGAAGGAGAATCAACAAATTGTTGAATTAGAGAAAAGTGTAGAAGATGGGCGATTTTTAACTGTTCTATTTGTCTCAAATATGTTTTAAGCTAAAGTGTAATGTTGTTTTATGATATTGTTGCTAAAGTTTCTGAATTGATCGAACTGGATGAGCTATGTGATTCATAGGAAAAACTGCAGCTTTACTATGGATTCCAGGATCATTTCGCGGAAGGTCCTGATATCAAAATCGTGCATATTTCTCTAGAGAGAGTGGGATTGTTTTTCAGAAACTAGACTATGATTATCATTAATATAAGAAAATAGTATGTACAGTAAGGTTGTAAATGCCTGTGATGTTATCATTTCTTTTTACCAGCTTCTTAACATGAAGCTTGTAAACAAATGGAATTGAATGGAATTGACTTAGGTGAAAGAATATGCATGTTGCGTGTACGTTGCATGATGAGTGATGTTCATTCTATGTACAAAAAGTCCATTTTCATATCGATGGGGCTAGCCTTTATGGGCCTAAACAACATCCTATTGTACTCAAAATTGTTCTCTAAAAGCTCGGCTTGTTCTCGATAATACTGTGGTAGTTGATTGTCTCCTTTTCACATCAACTGCCCGCCTTGATTCTGCATTGGCTAACCACGTTTACCTTCAAGTGAAGTTTTCTTCTGCCATTCTCTACGGAAAAGCGGTTACTTGACCAAGTCGTTATATGGTAAAACCATATATGACTTGGTCAGGCACAGTAATTATTCTATCTTATCCAATCTTTGGAGATGGATAGAAAAAATGAGTGATTTAAATCACCATTTATATCTTGAAGTATCTATATAACTTTTAGAAAACTGTAAACAAAGAAAGAATTGTGAGATTCCCTCGATCTCTCCATTTCATTTTATATGACTGTATTTGTCTTGTAGTAGTGATATTGGAGAAATATATTGTAATAATGGTTGAAAGCTAGTTTAACAGTGAAAAGTGAAAACATCCCACATCAAATTTTAAAATCAGAATAGTTTAATGTGTTGAATTCTTGATAAATGTGAACGTTGTATGGAAATAGATTGGTGTTCAAACATTATGGGACATCCCAAAATGAAAAGAATGTCATATAACTTAGAACCAGGGGAGAAATAATTTCATATGAAGTGTAACATAAACAGTAATGTTTCTATTAAGTGTAATCATTTCTTGATTTCTCTAATGAAGGTGTGTGCTTCGGGGATGTGTACCCAAGAAATTGCTCGTATATGCATCAAAATATTCTCATGAGTTTGAGGAGAGTTGTGGTTTTGGATGGAACTATGAGGCAGAACCTAAACATGATTGGAGCACCCTCATTGCTAATAAAAATGCCGAGTTGCAGCGCCTCACGGGTATCTACAAGAATATTCTGAAGAATGCGGATGTCACTCTGATAGAAGGGCGGGGAAAGGTTGGGAAATGTTAGGATTTGAATTTCATGCTCTTTAAGGCTTCAAGTTGAAGCATATTACCTTGTGTTCGACTGTACTTTCAGGTGGTGGATCCTCATACAGTGGATGTGGATGGTAAACTCTACTCGGCTA</genome_strand>
        <mrna_strand>AAAAAAGAAAAAAAACAGAGAAATTTATTCCGCCATGGCTACATCTTTGAGCTCACCAAAGCTCAGTACAACTCTTTCTTCTCCAACTTTCCATTCTCTTTACAAGACCAAATTCTCTAATTTCTCTCTTCTTTCTCTCTCTAACCCTATCAAGCCTCTCCGCTTCAATTTTCTCTCTCATACCCGTACCTCATCATTATCTTATGGCCGCCGTTTCACTACTCCTCGTGCTGAGTCATCTAATGGAGCTGAAACTCCTCGGCATTACGATTTCGATTTATTCACTATAGGTGCTGGTAGTGGTGGCGTTAGGGCTTCTCGTTTTGCTTCTAATTTTGGGGCTTCGGTTGCTGTTTGTGAGCTTCCTTTCTCTACTATATCTTCTGATTCAACTGGAGGCGTCGGTGGCAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTGCTTCGGGGATGTGTACCCAAGAAATTGCTCGTATATGCATCAAAATATTCTCATGAGTTTGAGGAGAGTTGTGGTTTTGGATGGAACTATGAGGCAGAACCTAAACATGATTGGAGCACCCTCATTGCTAATAAAAATGCCGAGTTGCAGCGCCTCACGGGTATCTACAAGAATATTCTGAAGAATGCGGATGTCACTCTGATAGAAGGGCGGGGAAAG....................................................................................GTGGTGGATCCTCATACAGTGGATGTGGATGGTAAACTCTACTCGGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E448478" ref_strand="+" ref_description="SGN-E448478 [cSTS-3-G8]">
      <seq>acatctttgagctcaccaaagctcagtacaactctttcttctccaacttttcatactttttacagaattaaattctctaatttctctcttctttctctctctaaccctatcaagcctctccgcttcaattttctcactcatccccgtacctcatcattatcttatggccgccgtttcactaccactcgtgctgagtcctctaatggagctgaaactcctcggcattacgatttcgatttattcactataggtgctggtagtggtggtgttagggcttctcggtttgcttctaattttggggcttcggttgctgtttgcgagcttcctttctctactatatcttctgattcaactggcggcgtcggtggcacgtgtgtgcttcgtggatgtgtacccaagaaattgctcgtgtatgcatcaaaatattctcatgagtttgaggagagttgtggttttggatggaactatgaggcagaacctaaacatgactggagcaccctcattgctaataaaaatgccgagttgcagcgcctcacgggtatctacaagaatattctgaagaatgcggatgttactctgattgaagggcggggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="21078" stop="18591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20778" g_stop="20408" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="371" r_length="371" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20407" i_stop="19115" i_length="1293">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.979" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19114" g_stop="18891" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="595" r_length="224" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E448478" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E448478" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20778" e_stop="20408"/>
          <exon e_start="19114" e_stop="18891"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATCTTTGAGCTCACCAAAGCTCAGTACAACTCTTTCTTCTCCAACTTTCCATTCTCTTTACAAGACCAAATTCTCTAATTTCTCTCTTCTTTCTCTCTCTAACCCTATCAAGCCTCTCCGCTTCAATTTTCTCTCTCATACCCGTACCTCATCATTATCTTATGGCCGCCGTTTCACTACTCCTCGTGCTGAGTCATCTAATGGAGCTGAAACTCCTCGGCATTACGATTTCGATTTATTCACTATAGGTGCTGGTAGTGGTGGCGTTAGGGCTTCTCGTTTTGCTTCTAATTTTGGGGCTTCGGTTGCTGTTTGTGAGCTTCCTTTCTCTACTATATCTTCTGATTCAACTGGAGGCGTCGGTGGCACGTGAGTCTTTCATTATAGTGAACCTTTTTTATTTGGTTGTGAAAAAATGTCATCTTTAGTTTTTTCCTACTTTTATCTGGGGAATTAGGTGAAGGAGAATCAACAAATTGTTGAATTAGAGAAAAGTGTAGAAGATGGGCGATTTTTAACTGTTCTATTTGTCTCAAATATGTTTTAAGCTAAAGTGTAATGTTGTTTTATGATATTGTTGCTAAAGTTTCTGAATTGATCGAACTGGATGAGCTATGTGATTCATAGGAAAAACTGCAGCTTTACTATGGATTCCAGGATCATTTCGCGGAAGGTCCTGATATCAAAATCGTGCATATTTCTCTAGAGAGAGTGGGATTGTTTTTCAGAAACTAGACTATGATTATCATTAATATAAGAAAATAGTATGTACAGTAAGGTTGTAAATGCCTGTGATGTTATCATTTCTTTTTACCAGCTTCTTAACATGAAGCTTGTAAACAAATGGAATTGAATGGAATTGACTTAGGTGAAAGAATATGCATGTTGCGTGTACGTTGCATGATGAGTGATGTTCATTCTATGTACAAAAAGTCCATTTTCATATCGATGGGGCTAGCCTTTATGGGCCTAAACAACATCCTATTGTACTCAAAATTGTTCTCTAAAAGCTCGGCTTGTTCTCGATAATACTGTGGTAGTTGATTGTCTCCTTTTCACATCAACTGCCCGCCTTGATTCTGCATTGGCTAACCACGTTTACCTTCAAGTGAAGTTTTCTTCTGCCATTCTCTACGGAAAAGCGGTTACTTGACCAAGTCGTTATATGGTAAAACCATATATGACTTGGTCAGGCACAGTAATTATTCTATCTTATCCAATCTTTGGAGATGGATAGAAAAAATGAGTGATTTAAATCACCATTTATATCTTGAAGTATCTATATAACTTTTAGAAAACTGTAAACAAAGAAAGAATTGTGAGATTCCCTCGATCTCTCCATTTCATTTTATATGACTGTATTTGTCTTGTAGTAGTGATATTGGAGAAATATATTGTAATAATGGTTGAAAGCTAGTTTAACAGTGAAAAGTGAAAACATCCCACATCAAATTTTAAAATCAGAATAGTTTAATGTGTTGAATTCTTGATAAATGTGAACGTTGTATGGAAATAGATTGGTGTTCAAACATTATGGGACATCCCAAAATGAAAAGAATGTCATATAACTTAGAACCAGGGGAGAAATAATTTCATATGAAGTGTAACATAAACAGTAATGTTTCTATTAAGTGTAATCATTTCTTGATTTCTCTAATGAAGGTGTGTGCTTCGGGGATGTGTACCCAAGAAATTGCTCGTATATGCATCAAAATATTCTCATGAGTTTGAGGAGAGTTGTGGTTTTGGATGGAACTATGAGGCAGAACCTAAACATGATTGGAGCACCCTCATTGCTAATAAAAATGCCGAGTTGCAGCGCCTCACGGGTATCTACAAGAATATTCTGAAGAATGCGGATGTCACTCTGATAGAAGGGCGGGGAA</genome_strand>
        <mrna_strand>ACATCTTTGAGCTCACCAAAGCTCAGTACAACTCTTTCTTCTCCAACTTTTCATACTTTTTACAGAATTAAATTCTCTAATTTCTCTCTTCTTTCTCTCTCTAACCCTATCAAGCCTCTCCGCTTCAATTTTCTCACTCATCCCCGTACCTCATCATTATCTTATGGCCGCCGTTTCACTACCACTCGTGCTGAGTCCTCTAATGGAGCTGAAACTCCTCGGCATTACGATTTCGATTTATTCACTATAGGTGCTGGTAGTGGTGGTGTTAGGGCTTCTCGGTTTGCTTCTAATTTTGGGGCTTCGGTTGCTGTTTGCGAGCTTCCTTTCTCTACTATATCTTCTGATTCAACTGGCGGCGTCGGTGGCAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTGCTTCGTGGATGTGTACCCAAGAAATTGCTCGTGTATGCATCAAAATATTCTCATGAGTTTGAGGAGAGTTGTGGTTTTGGATGGAACTATGAGGCAGAACCTAAACATGACTGGAGCACCCTCATTGCTAATAAAAATGCCGAGTTGCAGCGCCTCACGGGTATCTACAAGAATATTCTGAAGAATGCGGATGTTACTCTGATTGAAGGGCGGGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E314792" ref_strand="+" ref_description="SGN-E314792 [cTOA-20-H7]">
      <seq>atttattccgccatggctacatctttgagctcaccaaagctcagtacaactctttcttctccaactttccattctctttacaagaccaaattctctaatttctctcttctttctctctctaaccctatcaagcctctccgcttcaattttctctctcatacccgtacctcatcattatcttatggccgccgtttcactactcctcgtgctgagtcatctaatggagctgaaactcctcggcattacgatttcgatttattcactataggtgctggtagtggtggcgttagggcttctcgttttgcttctaattttggggcttcggttgctgtttgtgagcttcctttctctactatatcttctgattcaactggaggcgtcggtggcacgtgtgtgcttcggggatgtgtacccaagaaattgctcgtatatgcatcaaaatattctcatgagtttgaggagagttgtggttttggatggaactatgaggcagaacctaaacatgattggagcaccctcattgctaataaaatgccgagttgcagcgcctcacgggtatctacaagaatattctgaagaatgcggatgtcactctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="21096" stop="18605"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20796" g_stop="20408" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="389" r_length="389" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20407" i_stop="19115" i_length="1293">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19114" g_stop="18905" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="598" r_length="209" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E314792" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314792" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20796" e_stop="20408"/>
          <exon e_start="19114" e_stop="18905"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATTCCGCCATGGCTACATCTTTGAGCTCACCAAAGCTCAGTACAACTCTTTCTTCTCCAACTTTCCATTCTCTTTACAAGACCAAATTCTCTAATTTCTCTCTTCTTTCTCTCTCTAACCCTATCAAGCCTCTCCGCTTCAATTTTCTCTCTCATACCCGTACCTCATCATTATCTTATGGCCGCCGTTTCACTACTCCTCGTGCTGAGTCATCTAATGGAGCTGAAACTCCTCGGCATTACGATTTCGATTTATTCACTATAGGTGCTGGTAGTGGTGGCGTTAGGGCTTCTCGTTTTGCTTCTAATTTTGGGGCTTCGGTTGCTGTTTGTGAGCTTCCTTTCTCTACTATATCTTCTGATTCAACTGGAGGCGTCGGTGGCACGTGAGTCTTTCATTATAGTGAACCTTTTTTATTTGGTTGTGAAAAAATGTCATCTTTAGTTTTTTCCTACTTTTATCTGGGGAATTAGGTGAAGGAGAATCAACAAATTGTTGAATTAGAGAAAAGTGTAGAAGATGGGCGATTTTTAACTGTTCTATTTGTCTCAAATATGTTTTAAGCTAAAGTGTAATGTTGTTTTATGATATTGTTGCTAAAGTTTCTGAATTGATCGAACTGGATGAGCTATGTGATTCATAGGAAAAACTGCAGCTTTACTATGGATTCCAGGATCATTTCGCGGAAGGTCCTGATATCAAAATCGTGCATATTTCTCTAGAGAGAGTGGGATTGTTTTTCAGAAACTAGACTATGATTATCATTAATATAAGAAAATAGTATGTACAGTAAGGTTGTAAATGCCTGTGATGTTATCATTTCTTTTTACCAGCTTCTTAACATGAAGCTTGTAAACAAATGGAATTGAATGGAATTGACTTAGGTGAAAGAATATGCATGTTGCGTGTACGTTGCATGATGAGTGATGTTCATTCTATGTACAAAAAGTCCATTTTCATATCGATGGGGCTAGCCTTTATGGGCCTAAACAACATCCTATTGTACTCAAAATTGTTCTCTAAAAGCTCGGCTTGTTCTCGATAATACTGTGGTAGTTGATTGTCTCCTTTTCACATCAACTGCCCGCCTTGATTCTGCATTGGCTAACCACGTTTACCTTCAAGTGAAGTTTTCTTCTGCCATTCTCTACGGAAAAGCGGTTACTTGACCAAGTCGTTATATGGTAAAACCATATATGACTTGGTCAGGCACAGTAATTATTCTATCTTATCCAATCTTTGGAGATGGATAGAAAAAATGAGTGATTTAAATCACCATTTATATCTTGAAGTATCTATATAACTTTTAGAAAACTGTAAACAAAGAAAGAATTGTGAGATTCCCTCGATCTCTCCATTTCATTTTATATGACTGTATTTGTCTTGTAGTAGTGATATTGGAGAAATATATTGTAATAATGGTTGAAAGCTAGTTTAACAGTGAAAAGTGAAAACATCCCACATCAAATTTTAAAATCAGAATAGTTTAATGTGTTGAATTCTTGATAAATGTGAACGTTGTATGGAAATAGATTGGTGTTCAAACATTATGGGACATCCCAAAATGAAAAGAATGTCATATAACTTAGAACCAGGGGAGAAATAATTTCATATGAAGTGTAACATAAACAGTAATGTTTCTATTAAGTGTAATCATTTCTTGATTTCTCTAATGAAGGTGTGTGCTTCGGGGATGTGTACCCAAGAAATTGCTCGTATATGCATCAAAATATTCTCATGAGTTTGAGGAGAGTTGTGGTTTTGGATGGAACTATGAGGCAGAACCTAAACATGATTGGAGCACCCTCATTGCTAATAAAAATGCCGAGTTGCAGCGCCTCACGGGTATCTACAAGAATATTCTGAAGAATGCGGATGTCACTCTGAT</genome_strand>
        <mrna_strand>ATTTATTCCGCCATGGCTACATCTTTGAGCTCACCAAAGCTCAGTACAACTCTTTCTTCTCCAACTTTCCATTCTCTTTACAAGACCAAATTCTCTAATTTCTCTCTTCTTTCTCTCTCTAACCCTATCAAGCCTCTCCGCTTCAATTTTCTCTCTCATACCCGTACCTCATCATTATCTTATGGCCGCCGTTTCACTACTCCTCGTGCTGAGTCATCTAATGGAGCTGAAACTCCTCGGCATTACGATTTCGATTTATTCACTATAGGTGCTGGTAGTGGTGGCGTTAGGGCTTCTCGTTTTGCTTCTAATTTTGGGGCTTCGGTTGCTGTTTGTGAGCTTCCTTTCTCTACTATATCTTCTGATTCAACTGGAGGCGTCGGTGGCAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTGCTTCGGGGATGTGTACCCAAGAAATTGCTCGTATATGCATCAAAATATTCTCATGAGTTTGAGGAGAGTTGTGGTTTTGGATGGAACTATGAGGCAGAACCTAAACATGATTGGAGCACCCTCATTGCTAAT-AAAATGCCGAGTTGCAGCGCCTCACGGGTATCTACAAGAATATTCTGAAGAATGCGGATGTCACTCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E417453" ref_strand="+" ref_description="SGN-E417453 [STM-25-O18]">
      <seq>cgatgattctttgagctcaccaaagctcagcacgactctttcttctccaaccttttcatacctctttacagaactaaattctctaatttctctcttctttctctctctaaccctatcaagcctctccgcttcaattttctctctcatccccgtacctcatcattatcttatggccgccgtttcactaccactcgtgctgagtcctctaatggagctgaaactcctcgacattacgatttcgatttattcactataggtgctggtagtggtggcgttagggcttctcggtttgcttctaattttggggcttcggttgctgtttgtgagcttcctttctctactatatcttctgattcaactggcggcgttggtggcacgtgtgtgcttcgtggatgtgtacccaagaaattgctcgtgtatgcatcaaaatactctcatgagtttgaggagagttgtggttttggatggacctatgaggcagaacctaaacatgactggagcaccctcattgctaataaaaatgccgagttgcagcgcctcacgggtatctacaagaatattctgaagaatgcggatgttactctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="21075" stop="18607"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20782" g_stop="20408" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="377" r_length="377" r_score="0.936"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20407" i_stop="19115" i_length="1293">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.979" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19114" g_stop="18907" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="585" r_length="208" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E417453" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E417453" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20782" e_stop="20408"/>
          <exon e_start="19114" e_stop="18907"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTACATCTTTGAGCTCACCAAAGCTCAGTACAACTCTTTCTTCTCCAA-CTTTCCAT-TCTCTTTACAAGACCAAATTCTCTAATTTCTCTCTTCTTTCTCTCTCTAACCCTATCAAGCCTCTCCGCTTCAATTTTCTCTCTCATACCCGTACCTCATCATTATCTTATGGCCGCCGTTTCACTACTCCTCGTGCTGAGTCATCTAATGGAGCTGAAACTCCTCGGCATTACGATTTCGATTTATTCACTATAGGTGCTGGTAGTGGTGGCGTTAGGGCTTCTCGTTTTGCTTCTAATTTTGGGGCTTCGGTTGCTGTTTGTGAGCTTCCTTTCTCTACTATATCTTCTGATTCAACTGGAGGCGTCGGTGGCACGTGAGTCTTTCATTATAGTGAACCTTTTTTATTTGGTTGTGAAAAAATGTCATCTTTAGTTTTTTCCTACTTTTATCTGGGGAATTAGGTGAAGGAGAATCAACAAATTGTTGAATTAGAGAAAAGTGTAGAAGATGGGCGATTTTTAACTGTTCTATTTGTCTCAAATATGTTTTAAGCTAAAGTGTAATGTTGTTTTATGATATTGTTGCTAAAGTTTCTGAATTGATCGAACTGGATGAGCTATGTGATTCATAGGAAAAACTGCAGCTTTACTATGGATTCCAGGATCATTTCGCGGAAGGTCCTGATATCAAAATCGTGCATATTTCTCTAGAGAGAGTGGGATTGTTTTTCAGAAACTAGACTATGATTATCATTAATATAAGAAAATAGTATGTACAGTAAGGTTGTAAATGCCTGTGATGTTATCATTTCTTTTTACCAGCTTCTTAACATGAAGCTTGTAAACAAATGGAATTGAATGGAATTGACTTAGGTGAAAGAATATGCATGTTGCGTGTACGTTGCATGATGAGTGATGTTCATTCTATGTACAAAAAGTCCATTTTCATATCGATGGGGCTAGCCTTTATGGGCCTAAACAACATCCTATTGTACTCAAAATTGTTCTCTAAAAGCTCGGCTTGTTCTCGATAATACTGTGGTAGTTGATTGTCTCCTTTTCACATCAACTGCCCGCCTTGATTCTGCATTGGCTAACCACGTTTACCTTCAAGTGAAGTTTTCTTCTGCCATTCTCTACGGAAAAGCGGTTACTTGACCAAGTCGTTATATGGTAAAACCATATATGACTTGGTCAGGCACAGTAATTATTCTATCTTATCCAATCTTTGGAGATGGATAGAAAAAATGAGTGATTTAAATCACCATTTATATCTTGAAGTATCTATATAACTTTTAGAAAACTGTAAACAAAGAAAGAATTGTGAGATTCCCTCGATCTCTCCATTTCATTTTATATGACTGTATTTGTCTTGTAGTAGTGATATTGGAGAAATATATTGTAATAATGGTTGAAAGCTAGTTTAACAGTGAAAAGTGAAAACATCCCACATCAAATTTTAAAATCAGAATAGTTTAATGTGTTGAATTCTTGATAAATGTGAACGTTGTATGGAAATAGATTGGTGTTCAAACATTATGGGACATCCCAAAATGAAAAGAATGTCATATAACTTAGAACCAGGGGAGAAATAATTTCATATGAAGTGTAACATAAACAGTAATGTTTCTATTAAGTGTAATCATTTCTTGATTTCTCTAATGAAGGTGTGTGCTTCGGGGATGTGTACCCAAGAAATTGCTCGTATATGCATCAAAATATTCTCATGAGTTTGAGGAGAGTTGTGGTTTTGGATGGAACTATGAGGCAGAACCTAAACATGATTGGAGCACCCTCATTGCTAATAAAAATGCCGAGTTGCAGCGCCTCACGGGTATCTACAAGAATATTCTGAAGAATGCGGATGTCACTCTG</genome_strand>
        <mrna_strand>CGATGATTCTTTGAGCTCACCAAAGCTCAGCACGACTCTTTCTTCTCCAACCTTTTCATACCTCTTTACAGAACTAAATTCTCTAATTTCTCTCTTCTTTCTCTCTCTAACCCTATCAAGCCTCTCCGCTTCAATTTTCTCTCTCATCCCCGTACCTCATCATTATCTTATGGCCGCCGTTTCACTACCACTCGTGCTGAGTCCTCTAATGGAGCTGAAACTCCTCGACATTACGATTTCGATTTATTCACTATAGGTGCTGGTAGTGGTGGCGTTAGGGCTTCTCGGTTTGCTTCTAATTTTGGGGCTTCGGTTGCTGTTTGTGAGCTTCCTTTCTCTACTATATCTTCTGATTCAACTGGCGGCGTTGGTGGCAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTGCTTCGTGGATGTGTACCCAAGAAATTGCTCGTGTATGCATCAAAATACTCTCATGAGTTTGAGGAGAGTTGTGGTTTTGGATGGACCTATGAGGCAGAACCTAAACATGACTGGAGCACCCTCATTGCTAATAAAAATGCCGAGTTGCAGCGCCTCACGGGTATCTACAAGAATATTCTGAAGAATGCGGATGTTACTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E211304" ref_strand="+" ref_description="SGN-E211304 [cLEC-70-F11]">
      <seq>aaaaaagaaaaaaaacagagaaatttattccgccatggctacatctttgagctcaccaaagctcagtacaactctttcttctccaactttccattctctttacaagaccaaattctctaatttctctcttctttctctctctaaccctatcaagcctctccgcttcaattttctctctcatacccgtacctcatcattatcttatggccgccgtttcactactcctcgtgctgagtcatctaatggagctgaaactcctcggcattacgatttcgatttattcactataggtgctggtagtggtggcgttagggcttctcgttttgcttctaattttggggcttcggttgctgtttgtgagcttcctttctctactatatcttctgattcaactggaggcgtcggtggcacgtgtgtgcttcggggatgtgtacccaagaaattgctcgtatatgcatcaaaatattctcatgagtttgaggagagttgtggttttggatggaactatgaggcagaacctaaacatgattggagcaccctcattgctaataaaaatgccgagttgcagcgcctcacgggtatctacaagaatattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="21118" stop="18629"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20818" g_stop="20408" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="411" r_length="411" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20407" i_stop="19115" i_length="1293">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19114" g_stop="18929" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="597" r_length="186" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E211304" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211304" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20818" e_stop="20408"/>
          <exon e_start="19114" e_stop="18929"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAGAAAAAAAACAGAGAAATTTATTCCGCCATGGCTACATCTTTGAGCTCACCAAAGCTCAGTACAACTCTTTCTTCTCCAACTTTCCATTCTCTTTACAAGACCAAATTCTCTAATTTCTCTCTTCTTTCTCTCTCTAACCCTATCAAGCCTCTCCGCTTCAATTTTCTCTCTCATACCCGTACCTCATCATTATCTTATGGCCGCCGTTTCACTACTCCTCGTGCTGAGTCATCTAATGGAGCTGAAACTCCTCGGCATTACGATTTCGATTTATTCACTATAGGTGCTGGTAGTGGTGGCGTTAGGGCTTCTCGTTTTGCTTCTAATTTTGGGGCTTCGGTTGCTGTTTGTGAGCTTCCTTTCTCTACTATATCTTCTGATTCAACTGGAGGCGTCGGTGGCACGTGAGTCTTTCATTATAGTGAACCTTTTTTATTTGGTTGTGAAAAAATGTCATCTTTAGTTTTTTCCTACTTTTATCTGGGGAATTAGGTGAAGGAGAATCAACAAATTGTTGAATTAGAGAAAAGTGTAGAAGATGGGCGATTTTTAACTGTTCTATTTGTCTCAAATATGTTTTAAGCTAAAGTGTAATGTTGTTTTATGATATTGTTGCTAAAGTTTCTGAATTGATCGAACTGGATGAGCTATGTGATTCATAGGAAAAACTGCAGCTTTACTATGGATTCCAGGATCATTTCGCGGAAGGTCCTGATATCAAAATCGTGCATATTTCTCTAGAGAGAGTGGGATTGTTTTTCAGAAACTAGACTATGATTATCATTAATATAAGAAAATAGTATGTACAGTAAGGTTGTAAATGCCTGTGATGTTATCATTTCTTTTTACCAGCTTCTTAACATGAAGCTTGTAAACAAATGGAATTGAATGGAATTGACTTAGGTGAAAGAATATGCATGTTGCGTGTACGTTGCATGATGAGTGATGTTCATTCTATGTACAAAAAGTCCATTTTCATATCGATGGGGCTAGCCTTTATGGGCCTAAACAACATCCTATTGTACTCAAAATTGTTCTCTAAAAGCTCGGCTTGTTCTCGATAATACTGTGGTAGTTGATTGTCTCCTTTTCACATCAACTGCCCGCCTTGATTCTGCATTGGCTAACCACGTTTACCTTCAAGTGAAGTTTTCTTCTGCCATTCTCTACGGAAAAGCGGTTACTTGACCAAGTCGTTATATGGTAAAACCATATATGACTTGGTCAGGCACAGTAATTATTCTATCTTATCCAATCTTTGGAGATGGATAGAAAAAATGAGTGATTTAAATCACCATTTATATCTTGAAGTATCTATATAACTTTTAGAAAACTGTAAACAAAGAAAGAATTGTGAGATTCCCTCGATCTCTCCATTTCATTTTATATGACTGTATTTGTCTTGTAGTAGTGATATTGGAGAAATATATTGTAATAATGGTTGAAAGCTAGTTTAACAGTGAAAAGTGAAAACATCCCACATCAAATTTTAAAATCAGAATAGTTTAATGTGTTGAATTCTTGATAAATGTGAACGTTGTATGGAAATAGATTGGTGTTCAAACATTATGGGACATCCCAAAATGAAAAGAATGTCATATAACTTAGAACCAGGGGAGAAATAATTTCATATGAAGTGTAACATAAACAGTAATGTTTCTATTAAGTGTAATCATTTCTTGATTTCTCTAATGAAGGTGTGTGCTTCGGGGATGTGTACCCAAGAAATTGCTCGTATATGCATCAAAATATTCTCATGAGTTTGAGGAGAGTTGTGGTTTTGGATGGAACTATGAGGCAGAACCTAAACATGATTGGAGCACCCTCATTGCTAATAAAAATGCCGAGTTGCAGCGCCTCACGGGTATCTACAAGAATATTCT</genome_strand>
        <mrna_strand>AAAAAAGAAAAAAAACAGAGAAATTTATTCCGCCATGGCTACATCTTTGAGCTCACCAAAGCTCAGTACAACTCTTTCTTCTCCAACTTTCCATTCTCTTTACAAGACCAAATTCTCTAATTTCTCTCTTCTTTCTCTCTCTAACCCTATCAAGCCTCTCCGCTTCAATTTTCTCTCTCATACCCGTACCTCATCATTATCTTATGGCCGCCGTTTCACTACTCCTCGTGCTGAGTCATCTAATGGAGCTGAAACTCCTCGGCATTACGATTTCGATTTATTCACTATAGGTGCTGGTAGTGGTGGCGTTAGGGCTTCTCGTTTTGCTTCTAATTTTGGGGCTTCGGTTGCTGTTTGTGAGCTTCCTTTCTCTACTATATCTTCTGATTCAACTGGAGGCGTCGGTGGCAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTGCTTCGGGGATGTGTACCCAAGAAATTGCTCGTATATGCATCAAAATATTCTCATGAGTTTGAGGAGAGTTGTGGTTTTGGATGGAACTATGAGGCAGAACCTAAACATGATTGGAGCACCCTCATTGCTAATAAAAATGCCGAGTTGCAGCGCCTCACGGGTATCTACAAGAATATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E394916" ref_strand="+" ref_description="SGN-E394916 [TUS-43-G19]">
      <seq>caaaaaagaaaaaaaacagagaaatttattccgccatggctacatctttgagctcaccaaagctcagtacaactctttcttctccaactttccattctctttacaagaccaaattctctaatttctctcttctttctctctctaaccctatcaagcctctccgcttcaattttctctctcatacccgtacctcatcattatcttatggccgccgtttcactactcctcgtgctgagtcatctaatggagctgaaactcctcggcattacgatttcgatttattcactataggtgctggtagtggtggcgttagggcttctcgttttgcttctaattttggggcttcggttgctgtttgtgagcttcctttctctactatatcttctgattcaactggaggcgtcggtggcacgtgtgtgcttcggggatgtgtacccaagaaattgctcgtatatgcatcaaaatattctcatgagtttgaggagagttgtggttttggatggaactatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="21119" stop="18716"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20819" g_stop="20408" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="412" r_length="412" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20407" i_stop="19115" i_length="1293">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19114" g_stop="19014" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="513" r_length="101" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E394916" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E394916" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20819" e_stop="20408"/>
          <exon e_start="19114" e_stop="19014"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAAAGAAAAAAAACAGAGAAATTTATTCCGCCATGGCTACATCTTTGAGCTCACCAAAGCTCAGTACAACTCTTTCTTCTCCAACTTTCCATTCTCTTTACAAGACCAAATTCTCTAATTTCTCTCTTCTTTCTCTCTCTAACCCTATCAAGCCTCTCCGCTTCAATTTTCTCTCTCATACCCGTACCTCATCATTATCTTATGGCCGCCGTTTCACTACTCCTCGTGCTGAGTCATCTAATGGAGCTGAAACTCCTCGGCATTACGATTTCGATTTATTCACTATAGGTGCTGGTAGTGGTGGCGTTAGGGCTTCTCGTTTTGCTTCTAATTTTGGGGCTTCGGTTGCTGTTTGTGAGCTTCCTTTCTCTACTATATCTTCTGATTCAACTGGAGGCGTCGGTGGCACGTGAGTCTTTCATTATAGTGAACCTTTTTTATTTGGTTGTGAAAAAATGTCATCTTTAGTTTTTTCCTACTTTTATCTGGGGAATTAGGTGAAGGAGAATCAACAAATTGTTGAATTAGAGAAAAGTGTAGAAGATGGGCGATTTTTAACTGTTCTATTTGTCTCAAATATGTTTTAAGCTAAAGTGTAATGTTGTTTTATGATATTGTTGCTAAAGTTTCTGAATTGATCGAACTGGATGAGCTATGTGATTCATAGGAAAAACTGCAGCTTTACTATGGATTCCAGGATCATTTCGCGGAAGGTCCTGATATCAAAATCGTGCATATTTCTCTAGAGAGAGTGGGATTGTTTTTCAGAAACTAGACTATGATTATCATTAATATAAGAAAATAGTATGTACAGTAAGGTTGTAAATGCCTGTGATGTTATCATTTCTTTTTACCAGCTTCTTAACATGAAGCTTGTAAACAAATGGAATTGAATGGAATTGACTTAGGTGAAAGAATATGCATGTTGCGTGTACGTTGCATGATGAGTGATGTTCATTCTATGTACAAAAAGTCCATTTTCATATCGATGGGGCTAGCCTTTATGGGCCTAAACAACATCCTATTGTACTCAAAATTGTTCTCTAAAAGCTCGGCTTGTTCTCGATAATACTGTGGTAGTTGATTGTCTCCTTTTCACATCAACTGCCCGCCTTGATTCTGCATTGGCTAACCACGTTTACCTTCAAGTGAAGTTTTCTTCTGCCATTCTCTACGGAAAAGCGGTTACTTGACCAAGTCGTTATATGGTAAAACCATATATGACTTGGTCAGGCACAGTAATTATTCTATCTTATCCAATCTTTGGAGATGGATAGAAAAAATGAGTGATTTAAATCACCATTTATATCTTGAAGTATCTATATAACTTTTAGAAAACTGTAAACAAAGAAAGAATTGTGAGATTCCCTCGATCTCTCCATTTCATTTTATATGACTGTATTTGTCTTGTAGTAGTGATATTGGAGAAATATATTGTAATAATGGTTGAAAGCTAGTTTAACAGTGAAAAGTGAAAACATCCCACATCAAATTTTAAAATCAGAATAGTTTAATGTGTTGAATTCTTGATAAATGTGAACGTTGTATGGAAATAGATTGGTGTTCAAACATTATGGGACATCCCAAAATGAAAAGAATGTCATATAACTTAGAACCAGGGGAGAAATAATTTCATATGAAGTGTAACATAAACAGTAATGTTTCTATTAAGTGTAATCATTTCTTGATTTCTCTAATGAAGGTGTGTGCTTCGGGGATGTGTACCCAAGAAATTGCTCGTATATGCATCAAAATATTCTCATGAGTTTGAGGAGAGTTGTGGTTTTGGATGGAACTATGAGG</genome_strand>
        <mrna_strand>CAAAAAAGAAAAAAAACAGAGAAATTTATTCCGCCATGGCTACATCTTTGAGCTCACCAAAGCTCAGTACAACTCTTTCTTCTCCAACTTTCCATTCTCTTTACAAGACCAAATTCTCTAATTTCTCTCTTCTTTCTCTCTCTAACCCTATCAAGCCTCTCCGCTTCAATTTTCTCTCTCATACCCGTACCTCATCATTATCTTATGGCCGCCGTTTCACTACTCCTCGTGCTGAGTCATCTAATGGAGCTGAAACTCCTCGGCATTACGATTTCGATTTATTCACTATAGGTGCTGGTAGTGGTGGCGTTAGGGCTTCTCGTTTTGCTTCTAATTTTGGGGCTTCGGTTGCTGTTTGTGAGCTTCCTTTCTCTACTATATCTTCTGATTCAACTGGAGGCGTCGGTGGCAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTGCTTCGGGGATGTGTACCCAAGAAATTGCTCGTATATGCATCAAAATATTCTCATGAGTTTGAGGAGAGTTGTGGTTTTGGATGGAACTATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E271300" ref_strand="+" ref_description="SGN-E271300 [cLEM-5-P1]">
      <seq>tctttgagctcaccaaagctcagtacaactctttcttctccaactttccattctctttaccagaacaaattctctaatttctctcttctttctctctctaaccctatcaagcctctccgcttcaattttctctctcatacccgtacctcatcattatcttatggccgccgtttcactactcctcgtgctgagtcatctaatggagctgaaactcctcggcattaccgatttcgatttattcactataagtgctggtagtggtggcgttagggcttctcgttttgcttctaattttggggcttcggttgctgtttgtgagcttcctttctctactatatcttctgattcaactggaggcgtcngtggcacgtgtgtgcttcggggatgtgtacccaagaaattgctcgtatatgcatcaaaatattctcatgagtttgaggaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="21075" stop="18741"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20775" g_stop="20408" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="369" r_length="369" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20407" i_stop="19115" i_length="1293">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19114" g_stop="19041" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="443" r_length="74" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E271300" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271300" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20775" e_stop="20408"/>
          <exon e_start="19114" e_stop="19041"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTGAGCTCACCAAAGCTCAGTACAACTCTTTCTTCTCCAACTTTCCATTCTCTTTACAAGACCAAATTCTCTAATTTCTCTCTTCTTTCTCTCTCTAACCCTATCAAGCCTCTCCGCTTCAATTTTCTCTCTCATACCCGTACCTCATCATTATCTTATGGCCGCCGTTTCACTACTCCTCGTGCTGAGTCATCTAATGGAGCTGAAACTCCTCGGCATTA-CGATTTCGATTTATTCACTATAGGTGCTGGTAGTGGTGGCGTTAGGGCTTCTCGTTTTGCTTCTAATTTTGGGGCTTCGGTTGCTGTTTGTGAGCTTCCTTTCTCTACTATATCTTCTGATTCAACTGGAGGCGTCGGTGGCACGTGAGTCTTTCATTATAGTGAACCTTTTTTATTTGGTTGTGAAAAAATGTCATCTTTAGTTTTTTCCTACTTTTATCTGGGGAATTAGGTGAAGGAGAATCAACAAATTGTTGAATTAGAGAAAAGTGTAGAAGATGGGCGATTTTTAACTGTTCTATTTGTCTCAAATATGTTTTAAGCTAAAGTGTAATGTTGTTTTATGATATTGTTGCTAAAGTTTCTGAATTGATCGAACTGGATGAGCTATGTGATTCATAGGAAAAACTGCAGCTTTACTATGGATTCCAGGATCATTTCGCGGAAGGTCCTGATATCAAAATCGTGCATATTTCTCTAGAGAGAGTGGGATTGTTTTTCAGAAACTAGACTATGATTATCATTAATATAAGAAAATAGTATGTACAGTAAGGTTGTAAATGCCTGTGATGTTATCATTTCTTTTTACCAGCTTCTTAACATGAAGCTTGTAAACAAATGGAATTGAATGGAATTGACTTAGGTGAAAGAATATGCATGTTGCGTGTACGTTGCATGATGAGTGATGTTCATTCTATGTACAAAAAGTCCATTTTCATATCGATGGGGCTAGCCTTTATGGGCCTAAACAACATCCTATTGTACTCAAAATTGTTCTCTAAAAGCTCGGCTTGTTCTCGATAATACTGTGGTAGTTGATTGTCTCCTTTTCACATCAACTGCCCGCCTTGATTCTGCATTGGCTAACCACGTTTACCTTCAAGTGAAGTTTTCTTCTGCCATTCTCTACGGAAAAGCGGTTACTTGACCAAGTCGTTATATGGTAAAACCATATATGACTTGGTCAGGCACAGTAATTATTCTATCTTATCCAATCTTTGGAGATGGATAGAAAAAATGAGTGATTTAAATCACCATTTATATCTTGAAGTATCTATATAACTTTTAGAAAACTGTAAACAAAGAAAGAATTGTGAGATTCCCTCGATCTCTCCATTTCATTTTATATGACTGTATTTGTCTTGTAGTAGTGATATTGGAGAAATATATTGTAATAATGGTTGAAAGCTAGTTTAACAGTGAAAAGTGAAAACATCCCACATCAAATTTTAAAATCAGAATAGTTTAATGTGTTGAATTCTTGATAAATGTGAACGTTGTATGGAAATAGATTGGTGTTCAAACATTATGGGACATCCCAAAATGAAAAGAATGTCATATAACTTAGAACCAGGGGAGAAATAATTTCATATGAAGTGTAACATAAACAGTAATGTTTCTATTAAGTGTAATCATTTCTTGATTTCTCTAATGAAGGTGTGTGCTTCGGGGATGTGTACCCAAGAAATTGCTCGTATATGCATCAAAATATTCTCATGAGTTTGAGGAGA</genome_strand>
        <mrna_strand>TCTTTGAGCTCACCAAAGCTCAGTACAACTCTTTCTTCTCCAACTTTCCATTCTCTTTACCAGAACAAATTCTCTAATTTCTCTCTTCTTTCTCTCTCTAACCCTATCAAGCCTCTCCGCTTCAATTTTCTCTCTCATACCCGTACCTCATCATTATCTTATGGCCGCCGTTTCACTACTCCTCGTGCTGAGTCATCTAATGGAGCTGAAACTCCTCGGCATTACCGATTTCGATTTATTCACTATAAGTGCTGGTAGTGGTGGCGTTAGGGCTTCTCGTTTTGCTTCTAATTTTGGGGCTTCGGTTGCTGTTTGTGAGCTTCCTTTCTCTACTATATCTTCTGATTCAACTGGAGGCGTCNGTGGCAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTGCTTCGGGGATGTGTACCCAAGAAATTGCTCGTATATGCATCAAAATATTCTCATGAGTTTGAGGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E202135" ref_strand="+" ref_description="SGN-E202135 [cLEC-7-E10]">
      <seq>aaaaaagaaaaaaaacagagaaatttattccgccatggctacatctttgagctcaccaaagctcagtacaactctttcttctccaactttccattctctttacaagaccaaattctctaatttctctcttctttctctctctaaccctatcaagcctctccgcttcaattttctctctcatacccgtacctcatcattatcttatggccgccgtttcactactcctcgtgctgagtcatctaatggagctgaaactcctcggcattacgatttcgatttattcactataggtgctggtagtggtggcgttagggcttctcgttttgcttctaattttggggcttcggttgctgtttgtgagcttcctttctctactatatcttctgattcaactggaggcgtcggtggcacgtgtgtgcttcggggatgtgtacccaagaaattgctcgtatatgcatcaaaatattctcatgagtttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="21118" stop="18746"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20818" g_stop="20408" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="411" r_length="411" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20407" i_stop="19115" i_length="1293">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19114" g_stop="19046" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="480" r_length="69" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E202135" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202135" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20818" e_stop="20408"/>
          <exon e_start="19114" e_stop="19046"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAGAAAAAAAACAGAGAAATTTATTCCGCCATGGCTACATCTTTGAGCTCACCAAAGCTCAGTACAACTCTTTCTTCTCCAACTTTCCATTCTCTTTACAAGACCAAATTCTCTAATTTCTCTCTTCTTTCTCTCTCTAACCCTATCAAGCCTCTCCGCTTCAATTTTCTCTCTCATACCCGTACCTCATCATTATCTTATGGCCGCCGTTTCACTACTCCTCGTGCTGAGTCATCTAATGGAGCTGAAACTCCTCGGCATTACGATTTCGATTTATTCACTATAGGTGCTGGTAGTGGTGGCGTTAGGGCTTCTCGTTTTGCTTCTAATTTTGGGGCTTCGGTTGCTGTTTGTGAGCTTCCTTTCTCTACTATATCTTCTGATTCAACTGGAGGCGTCGGTGGCACGTGAGTCTTTCATTATAGTGAACCTTTTTTATTTGGTTGTGAAAAAATGTCATCTTTAGTTTTTTCCTACTTTTATCTGGGGAATTAGGTGAAGGAGAATCAACAAATTGTTGAATTAGAGAAAAGTGTAGAAGATGGGCGATTTTTAACTGTTCTATTTGTCTCAAATATGTTTTAAGCTAAAGTGTAATGTTGTTTTATGATATTGTTGCTAAAGTTTCTGAATTGATCGAACTGGATGAGCTATGTGATTCATAGGAAAAACTGCAGCTTTACTATGGATTCCAGGATCATTTCGCGGAAGGTCCTGATATCAAAATCGTGCATATTTCTCTAGAGAGAGTGGGATTGTTTTTCAGAAACTAGACTATGATTATCATTAATATAAGAAAATAGTATGTACAGTAAGGTTGTAAATGCCTGTGATGTTATCATTTCTTTTTACCAGCTTCTTAACATGAAGCTTGTAAACAAATGGAATTGAATGGAATTGACTTAGGTGAAAGAATATGCATGTTGCGTGTACGTTGCATGATGAGTGATGTTCATTCTATGTACAAAAAGTCCATTTTCATATCGATGGGGCTAGCCTTTATGGGCCTAAACAACATCCTATTGTACTCAAAATTGTTCTCTAAAAGCTCGGCTTGTTCTCGATAATACTGTGGTAGTTGATTGTCTCCTTTTCACATCAACTGCCCGCCTTGATTCTGCATTGGCTAACCACGTTTACCTTCAAGTGAAGTTTTCTTCTGCCATTCTCTACGGAAAAGCGGTTACTTGACCAAGTCGTTATATGGTAAAACCATATATGACTTGGTCAGGCACAGTAATTATTCTATCTTATCCAATCTTTGGAGATGGATAGAAAAAATGAGTGATTTAAATCACCATTTATATCTTGAAGTATCTATATAACTTTTAGAAAACTGTAAACAAAGAAAGAATTGTGAGATTCCCTCGATCTCTCCATTTCATTTTATATGACTGTATTTGTCTTGTAGTAGTGATATTGGAGAAATATATTGTAATAATGGTTGAAAGCTAGTTTAACAGTGAAAAGTGAAAACATCCCACATCAAATTTTAAAATCAGAATAGTTTAATGTGTTGAATTCTTGATAAATGTGAACGTTGTATGGAAATAGATTGGTGTTCAAACATTATGGGACATCCCAAAATGAAAAGAATGTCATATAACTTAGAACCAGGGGAGAAATAATTTCATATGAAGTGTAACATAAACAGTAATGTTTCTATTAAGTGTAATCATTTCTTGATTTCTCTAATGAAGGTGTGTGCTTCGGGGATGTGTACCCAAGAAATTGCTCGTATATGCATCAAAATATTCTCATGAGTTTGA</genome_strand>
        <mrna_strand>AAAAAAGAAAAAAAACAGAGAAATTTATTCCGCCATGGCTACATCTTTGAGCTCACCAAAGCTCAGTACAACTCTTTCTTCTCCAACTTTCCATTCTCTTTACAAGACCAAATTCTCTAATTTCTCTCTTCTTTCTCTCTCTAACCCTATCAAGCCTCTCCGCTTCAATTTTCTCTCTCATACCCGTACCTCATCATTATCTTATGGCCGCCGTTTCACTACTCCTCGTGCTGAGTCATCTAATGGAGCTGAAACTCCTCGGCATTACGATTTCGATTTATTCACTATAGGTGCTGGTAGTGGTGGCGTTAGGGCTTCTCGTTTTGCTTCTAATTTTGGGGCTTCGGTTGCTGTTTGTGAGCTTCCTTTCTCTACTATATCTTCTGATTCAACTGGAGGCGTCGGTGGCAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTGCTTCGGGGATGTGTACCCAAGAAATTGCTCGTATATGCATCAAAATATTCTCATGAGTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E446159" ref_strand="+" ref_description="SGN-E446159 [cSTA-20-M11]">
      <seq>atctttgagctcaccaaagctagcacgactctttcttctgcaacttttcatactctttacagaactaaattctctaatttctctcttctttctctctctaaccctatcaagcctctccgcttcaattttctctctcatccccgtacctcatcattatctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="21076" stop="20315"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20776" g_stop="20615" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E446159" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>162</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E446159" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20776" e_stop="20615"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTTGAGCTCACCAAAGCTCAGTACAACTCTTTCTTCTCCAACTTTCCATTCTCTTTACAAGACCAAATTCTCTAATTTCTCTCTTCTTTCTCTCTCTAACCCTATCAAGCCTCTCCGCTTCAATTTTCTCTCTCATACCCGTACCTCATCATTATCTTA</genome_strand>
        <mrna_strand>ATCTTTGAGCTCACCAAAGCT-AGCACGACTCTTTCTTCTGCAACTTTTCATACTCTTTACAGAACTAAATTCTCTAATTTCTCTCTTCTTTCTCTCTCTAACCCTATCAAGCCTCTCCGCTTCAATTTTCTCTCTCATCCCCGTACCTCATCATTATCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E367227" ref_strand="+" ref_description="SGN-E367227 [cLPT-5-O5]">
      <seq>taaaaattagaatttgtgatcattctctctcactaatacagaaggggcaattcatcactgcttgcaccacaacttcttcagtggcgcgtgccgccctcgtgcaaaggggatctgtatctcgcacctcgattgttcttggattaccatcaatgagcaagggtggaaaagtgaaatgttcaatggaaggaaaaggaaagggtgaatcaaagtttggaatgggagaatcattgatggcagcagcagtagcagcaagcatgtcaaacccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatccttttaggtgtatttggtttgatttggtctctctacactgtttacacttctggacttgatgaagatgaagaatctggaatgtctctttaatttttgtcatactataatcaaactttaattaatttaactacttcttttgatgttgtatctcttacactcttcaattgaagtattgtatttttctttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24844" stop="5951"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24544" g_stop="24408" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="0.920"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23334" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="531" r_length="393" r_score="0.946"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23333" i_stop="23268" i_length="66">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.503" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23267" g_stop="23243" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="556" r_length="25" r_score="0.640"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E367227" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.031" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367227" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24544" e_stop="24408"/>
          <exon e_start="23744" e_stop="23334"/>
          <exon e_start="23267" e_stop="23243"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAA-CCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATTTTTCCTTCTCCTCTTTCAATAATCCTTCAATTTGTGATGCATTAAACAATATTGAACAAAATTAGTGATTTTTAGAAAGGGAAGAAAGAA</genome_strand>
        <mrna_strand>TAAAAATTAGAATTTGTGATCATTCTCTCTCACTAATACAGAAGGGGCAATTCATCACTGCTTGCACCACAACTTCTTCAGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCGATTGTTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAAGGAAAGGGTGAATCAAAGTTTGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAACCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTC---------T-T-TA--A-----TTTTTGTCATACTATAATCAAACTTTAATTAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTAT..................................................................TTTTCTTTAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E283851" ref_strand="+" ref_description="SGN-E283851 [cLER-13-C17]">
      <seq>ggtggaaaagtgaaatgttcaatggaaggaaagggaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagcatgtcaagcccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatccttttaggtgtatttggtttgatttggtctctctacactgtttacacttctggacttgatgaagatgaagaatctggaatgtctctttaatttttgtctattattttttttttgtcatactataatcaaactttaatgaatttaactacttcttttgatgttgtatctcttacactcttcaattgaagtattgtatttttccttctcctctttcaataatccttcaatttgtgatgcattaaacaatattgaacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24024" stop="22972"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23724" g_stop="23266" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="459" r_length="459" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E283851" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283851" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23724" e_stop="23266"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATTTTTCCTTCTCCTCTTTCAATAATCCTTCAATTTGTGATGCATTAAACAATATTGAACAAAATTAGTG</genome_strand>
        <mrna_strand>GGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATTTTTCCTTCTCCTCTTTCAATAATCCTTCAATTTGTGATGCATTAAACAATATTGAACAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E292048" ref_strand="+" ref_description="SGN-E292048 [cLET-1-A1](-)">
      <seq>catcaatgagcaagggtggaaaagtgaaatgttcaatggaaggaaagggaaagggtcaatcaaagttgggaatgggaccatcattgatgccagcagcagtagcagcaagcatgtcaagcccagtagcaatggctttggttgatcaaagaatgagcactgaaggcacagggctaccatttggactcagcaacaatcttcttggttggatccttttaggtgtatttggtttgatttggtctctctacactgtttacacttctggacttgatgaagatgaagaatctggaatgtctctttaatttttgtctattattttttttttgtcatactataatcaaactttaatgaatttaactacttcttttgatgttgtatctcttacactcttcaattgaagtattgtatttttccttctcctctttcaataatccttcaatttgtgatgcattaaacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24038" stop="22982"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23738" g_stop="23276" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="463" r_length="463" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E292048" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292048" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23738" e_stop="23276"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATTTTTCCTTCTCCTCTTTCAATAATCCTTCAATTTGTGATGCATTAAACAATATTGAAC</genome_strand>
        <mrna_strand>CATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTCAATCAAAGTTGGGAATGGGACCATCATTGATGCCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATCAAAGAATGAGCACTGAAGGCACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATTTTTCCTTCTCCTCTTTCAATAATCCTTCAATTTGTGATGCATTAAACAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E373878" ref_strand="+" ref_description="SGN-E373878 [TUS-31-K8]">
      <seq>aaaagttagaagttgtgatcattctctctcactaatacagaaatggcaaccatcactgcttgcaccacaacttcttcggtggcgcgtgccgccctcgtgcaaaggggatctgtatctcgcacctcagttgttcttggattaccatcaatgagcaagggtggaaaagtgaaatgttcaatggaaggaaagggaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagcatgtcaagcccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatccttttaggtgtatttggtttgatttggtctctctacactgtttacacttctggacttgatgaagatgaagaatctggaatgtctctttaatttttgtctattattttttttttgtcatactataatcaaactttaatgaatttaactacttcttttgatgttgtatctcttacactcttcaattgaagtattgtatttttccttctcctctttcaataatccttcaatttgtgatgcattaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24843" stop="22982"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24543" g_stop="24408" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23277" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="604" r_length="468" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E373878" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373878" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24543" e_stop="24408"/>
          <exon e_start="23744" e_stop="23277"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATTTTTCCTTCTCCTCTTTCAATAATCCTTCAATTTGTGATGCATTAAACAATATTGAA</genome_strand>
        <mrna_strand>AAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATTTTTCCTTCTCCTCTTTCAATAATCCTTCAATTTGTGATGCATTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E378287" ref_strand="+" ref_description="SGN-E378287 [TUS-31-K8]">
      <seq>gatcattctctctcactcatacagaaatggcaaccatcactgcttgcaccacaacttcttcggtggcgcgtgccgccctcgtgcaaagggagatctgtatctcgcacctcagttgttcttggattaccatcaatgagcaagggctggaaaagtgaaatgttcaatggaaggaaagggaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtatcagcaagcatgtcaagcccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatccttttaggtgtatttggtttgatttggtctctctacactgtttacacttctggacttgatgaagatgaagaatctggaatgtctctttaatttttgactattattttttttttgtcatactataatcaaactttaatgaatttaactacttcttttgatgttgtatctcttacactcttcaattgaagtattgaatttttccttctcctctttcaataatccttcaatttgtgatgcattaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24827" stop="22982"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24527" g_stop="24408" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23277" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="590" r_length="469" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E378287" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E378287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24527" e_stop="24408"/>
          <exon e_start="23744" e_stop="23277"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGG-GATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGG-TGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATTTTTCCTTCTCCTCTTTCAATAATCCTTCAATTTGTGATGCATTAAACAATATTGAA</genome_strand>
        <mrna_strand>GATCATTCTCTCTCACTCATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGAGATCTGTATCTCGCACCTCAGTTGTTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCAATGAGCAAGGGCTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTATCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGACTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGAATTTTTCCTTCTCCTCTTTCAATAATCCTTCAATTTGTGATGCATTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E373877" ref_strand="+" ref_description="SGN-E373877 [TUS-31-K8](-)">
      <seq>aaaaagttagaagttgtgatcattctctctcactaatacagaaatggcaaccatcactgcttgcaccacaacttcttcggtggcgcgtgccgccctcgtgcaaaggggatctgtatctcgcacctcagttgttcttggattaccatcaatgagcaagggtggaaaagtgaaatgttcaatggaaggaaagggaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagcatgtcaagcccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatccttttaggtgtatttggtttgatttggtctctttacactgtttacacttctggacttgatgaagatgaagaatttggaatgtctctttaatttttgtctattattttttttttgtcattctataatcaaactttaatgaatttaactacttcttttgatgttgtatctcttacactcttcaattgaagtattgtatttttccttctcctctttcaataatccttcaatttgtgatgcattaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24844" stop="22982"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24544" g_stop="24408" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23278" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="604" r_length="467" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E373877" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373877" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24544" e_stop="24408"/>
          <exon e_start="23744" e_stop="23278"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATTTTTCCTTCTCCTCTTTCAATAATCCTTCAATTTGTGATGCATTAAACAATATTGA</genome_strand>
        <mrna_strand>AAAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTTTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATTTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATTCTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATTTTTCCTTCTCCTCTTTCAATAATCCTTCAATTTGTGATGCATTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E292068" ref_strand="+" ref_description="SGN-E292068 [cLET-1-C13]">
      <seq>aaaagttagaagtagtgatcattctctctcactaatacagaaatggcaaccatcactgcttgcaccacaacttcttcggtggcgcgtgccgccctcgtgcaaaggggatctgtatctcgcacctcaattgatcttggattaccatcaatgagcaagggtggaaaagtgaaatgttcaatggaaggaaagggaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagcatgtcaagcccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcaacaacaatcttgttggttggatccttttacgtgtatttggtttgatttggtctctctacactgattacacttctggacttgatgaagatgaacaatctggaatgtctctttaatttttgtctattatttgttttttgtcatactataatcaaactttaatgaatttaactacttcttttgatgttgtatctcttacactcttcaattgaagtattgtatttttccttctcctctttcaataatccttcaatttgtgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24843" stop="22994"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24543" g_stop="24408" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23294" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="587" r_length="451" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E292068" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292068" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24543" e_stop="24408"/>
          <exon e_start="23744" e_stop="23294"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATTTTTCCTTCTCCTCTTTCAATAATCCTTCAATTTGTGATG</genome_strand>
        <mrna_strand>AAAAGTTAGAAGTAGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAATTGATCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAACAACAATCTTGTTGGTTGGATCCTTTTACGTGTATTTGGTTTGATTTGGTCTCTCTACACTGATTACACTTCTGGACTTGATGAAGATGAACAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTGTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATTTTTCCTTCTCCTCTTTCAATAATCCTTCAATTTGTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E732824" ref_strand="+" ref_description="SGN-E732824 [LB03BA04]">
      <seq>caataaactgagttgataatagccctatcaacaaaaaaaagttagaagttgtgatcattctctctcactaatacagaaatggcaaccatcactgcttgcaccacaacttcttcggtggcgcgtgccgccctcgtgcaaaggggatctgtatctcgcacctcagttgttcttggattaccatcaatgagcaagggtggaaaagtgaaatgttcaatggaaggaaagggaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagcatgtcaagcccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatccttttaggtgtatttggtttgatttggtctctctacactgtttacacttctggacttgatgaagatgaagaatctggaatgtctctttaatttttgtctattattttttttttgtcatactataatcaaactttaatgaatttaactacttcttttgatgttgtatctcttacactcttcaattgaagtattgtatttttccttctcctctttcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24878" stop="23011"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24579" g_stop="24408" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23305" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="612" r_length="440" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E732824" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732824" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24579" e_stop="24408"/>
          <exon e_start="23744" e_stop="23305"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATAAACTGAGTTGATAATAGCCCTATCAACAAAAAAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATTTTTCCTTCTCCTCTTTCAATAATCCTTC</genome_strand>
        <mrna_strand>CAATAAACTGAGTTGATAATAGCCCTATCAACAAAAAAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATTTTTCCTTCTCCTCTTTCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E727953" ref_strand="+" ref_description="SGN-E727953 [LA16BA04]">
      <seq>aatatatctgagttgataatagccctatcaacaaaaaaaagttagaagttgtgatcattctctctcactaatacagaaatggcaaccatcactgcttgcaccacaacttcttcggtggcgcgtgccgccctcgtgcaaaggggatctgtatctcgcacctcagttgttcttggattaccatcaatgagcaagggtggaaaagtgaaatgttcaatggaaggaaagggaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagcatgtcaagcccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatccttttaggtgtatttggtttgatttggtctctctacactgtttacacttctggacttgatgaagatgaagaatctggaatgtctctttaatttttgtctattattttttttttgtcatactataatcaaactttaatgaatttaactacttcttttgatgttgtatctcttacactcttcaattgaagaattgtatttttccttctcctctttcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24878" stop="23011"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24578" g_stop="24408" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23305" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="612" r_length="440" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E727953" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727953" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24578" e_stop="24408"/>
          <exon e_start="23744" e_stop="23305"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATA-AACTGAGTTGATAATAGCCCTATCAACAAAAAAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATTTTTCCTTCTCCTCTTTCAATAATCCTTC</genome_strand>
        <mrna_strand>AATATATCTGAGTTGATAATAGCCCTATCAACAAAAAAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGAATTGTATTTTTCCTTCTCCTCTTTCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E371950" ref_strand="+" ref_description="SGN-E371950 [TUS-30-A16]">
      <seq>aagttagaagttgtgatcattctctctcactaatacagaaatggcaaccatcactgcttgcaccacaacttcttcggtggcgcgtgccgccctcgtgcaaaggggatctgtatctcgcacctcagttgttcttggattaccatcaatgagcaagggtggaaaagtgaaatgttcaatggaaggaaagggaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagcatgtcaagcccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatccttttaggtgtatttggtttgatttggtctctctacactgtttacacttctggacttgatgaagatgaagaatctggaatgtctctttaatttttgtctattattttttttttgtcatactataatcaaactttaatgaatttaactacttcttttgatgttgtatctcttacactcttcaattgaagtattgtatttttccttctcctctttcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24841" stop="23011"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24541" g_stop="24408" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23305" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="574" r_length="440" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E371950" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371950" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24541" e_stop="24408"/>
          <exon e_start="23744" e_stop="23305"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATTTTTCCTTCTCCTCTTTCAATAATCCTTC</genome_strand>
        <mrna_strand>AAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATTTTTCCTTCTCCTCTTTCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E403097" ref_strand="+" ref_description="SGN-E403097 [PPC-9-J17]">
      <seq>tgatatcaacaaagaagttgaagttgtgatcattctctctcagtaatacagaaatggcaaccatcactgcttgcaccacaacttcttctgtggcacgtgccgccctcgtgcaaaggggatctgtatcccgcacctcaactattcttggattaccatccatgagcaagggtggaaaagtgaaatgctcaatggaaggaaagccaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagtatgtcaaacccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatcctttttggtgtatttggtttgatttggtctctctacactgtctacacttctggaattgatgatgatgaagaatctggactctctctttaaactttgtgtattattatgtgatactataatcaactttaagnacttcttttgatgttgtatctcttagactcttcaattgaaggattgtatttttccttctcctctttctaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24853" stop="23011"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24557" g_stop="24408" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="147" r_length="147" r_score="0.907"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23306" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="570" r_length="423" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E403097" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.033" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E403097" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24557" e_stop="24408"/>
          <exon e_start="23744" e_stop="23306"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTATCAACAAAAAAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATTTTTCCTTCTCCTCTTTCAATAATCCTT</genome_strand>
        <mrna_strand>TGATATCAACAAAGAA--GTT-GAAGTTGTGATCATTCTCTCTCAGTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCTGTGGCACGTGCCGCCCTCGTGCAAAGGGGATCTGTATCCCGCACCTCAACTATTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCCATGAGCAAGGGTGGAAAAGTGAAATGCTCAATGGAAGGAAAGCCAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGTATGTCAAACCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTTGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTCTACACTTCTGGAATTGATGATGATGAAGAATCTGGACTCTCTCTTTAAACTTTGTGTATTA------TTATGTGATACTATAATC-AACTTTAA-G--------NACTTCTTTTGATGTTGTATCTCTTAGACTCTTCAATTGAAGGATTGTATTTTTCCTTCTCCTCTTTCTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E715207" ref_strand="+" ref_description="SGN-E715207 [FB13CF01]">
      <seq>attctctctcactaatacagaaatggcaaccatcactgcttgcaccacaacttcttcggtggcgcgtgccgccctcgtgcaaaggggatctgtatctcgcacctcagttgttcttggattaccatcaatgagcaagggtggaaaagtgaaatgttcaatggaaggaaagggaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagcatgtcaagcccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatccttttaggtgtatttggtttgatttggtctctctacactgtttacacttctggacttgatgaagatgaagaatctggaatgtctctttaatttttgtctattattttttttttgtcatactataatcaaactttaatgaatttaactacttcttttgatgttgtatctcttacactcttcaattgaagtattgtatttttccttctcctctttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24823" stop="23011"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24523" g_stop="24408" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23306" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="555" r_length="439" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E715207" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E715207" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24523" e_stop="24408"/>
          <exon e_start="23744" e_stop="23306"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATTTTTCCTTCTCCTCTTTCAATAATCCTT</genome_strand>
        <mrna_strand>ATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATTTTTCCTTCTCCTCTTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E296150" ref_strand="+" ref_description="SGN-E296150 [cLET-24-D16]">
      <seq>aaaaaaaagttagaagttgtgatcattctctctcactaatacagaaatggcaaccatcactgcttgcaccacaacttcttcggtggcgcgtgccgccctcgtgcaaaggggatctgtatctcgcacctcagttgttcttggattaccatcaatgagcaagggtggaaaagtgaaatgttcaatggaaggaaagggaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagcatgtcaagcccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatccttttaggtgtatttggtttgatttggtctctctacactgtttacacttctggacttgatgaagatgaagaatctggaatgtctctttaatttttgtctattattttttttttgtcatactataatcaaactttaatgaatttaactacttcttttgatgttgtatctcttacactcttcaattgaagtattgtatttttccttctcctctttcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24847" stop="23011"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24547" g_stop="24408" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23307" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="578" r_length="438" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E296150" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296150" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24547" e_stop="24408"/>
          <exon e_start="23744" e_stop="23307"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATTTTTCCTTCTCCTCTTTCAATAATCCT</genome_strand>
        <mrna_strand>AAAAAAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATTTTTCCTTCTCCTCTTTCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E371949" ref_strand="+" ref_description="SGN-E371949 [TUS-30-A16](-)">
      <seq>aaagttagaagttgtgatcattctctctcactaatacagaaatggcaaccatcactgcttgcaccacaacttcttcggtggcgcgtgccgccctcgtgcaaaggggatctgtatctcgcacctcagttgttcttggattaccatcaatgagcaagggtggaaaagtgaaatgttcaatggaaggaaagggaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagcatgtcaagcccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatccttttaggtgtatttggtttgatttggtctctctacactgtttacacttctggacttgatgaagatgaagaatctggaatgtctctttaatttttgtctattattttttttttgtcatactataatcaaactttaatgaatttaactacttcttttgatgttgtatctcttacactcttcaattgaagtattgtatttttccttctcctctttcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24842" stop="23011"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24542" g_stop="24408" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23307" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="573" r_length="438" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E371949" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371949" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24542" e_stop="24408"/>
          <exon e_start="23744" e_stop="23307"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATTTTTCCTTCTCCTCTTTCAATAATCCT</genome_strand>
        <mrna_strand>AAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATTTTTCCTTCTCCTCTTTCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E403531" ref_strand="+" ref_description="SGN-E403531 [PPC-10-L24]">
      <seq>ggaaaagtgaaatgctcaatggaaggaaagccaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagtatgtcaaacccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatcctttttggtgtatttggtttgatttggtctctctacactgtctacacttctggaattgatgatgatgaagaatctggactctctctttaaactttgtgtattattatgtgatactataatcaactttaagtacttcttttgatgttgtatctcttagactcttcaattgaagtattgtatttttccttctcctcttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24021" stop="23011"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23721" g_stop="23307" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="399" r_length="399" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E403531" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="1.040" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E403531" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23721" e_stop="23307"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATTTTTCCTTCTCCTCTTTCAATAATCCT</genome_strand>
        <mrna_strand>GGAAAAGTGAAATGCTCAATGGAAGGAAAGCCAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGTATGTCAAACCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTTGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTCTACACTTCTGGAATTGATGATGATGAAGAATCTGGACTCTCTCTTTAAACTTTGTGTATTA------TTATGTGATACTATAATC-AACTTTAA-G--------TACTTCTTTTGATGTTGTATCTCTTAGACTCTTCAATTGAAGTATTGTATTTTTCCTTCTCCTCTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E732425" ref_strand="+" ref_description="SGN-E732425 [LB02AE10]">
      <seq>aggaaaaaaagttagaagttgtgatcattctctctcactaatacagaaatggcaaccatcactgcttgcaccacaacttcttcggtggcgcgtgccgccctcgtgcaaaggggatctgtatctcgcacctcagttgttcttggattaccatcaatgagcaagggtggaaaagtgaaatgttcaatggaaggaaagggaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagcatgtcaagcccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatccttttaggtgtatttggtttgatttggtctctctacactgtttacacttctggacttgatgaagatgaagaatctggaatgtctctttaatttttgtctattattttttttttgtcatactataatcaaactttaatgaatttaactacttcttttgatgttgtatctcttacactcttcaattgaagtattgtatttttccttctcctctttcaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24846" stop="23011"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24549" g_stop="24408" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23309" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="578" r_length="436" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E732425" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732425" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24549" e_stop="24408"/>
          <exon e_start="23744" e_stop="23309"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAAAAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATTTTTCCTTCTCCTCTTTCAATAATC</genome_strand>
        <mrna_strand>AGGAAAAAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATTTTTCCTTCTCCTCTTTCAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E732320" ref_strand="+" ref_description="SGN-E732320 [LB01DD10]">
      <seq>aaaagttagaagctgtgatcattctctctcactaatacagaaatggcaaccatcactgcttgcaccacaacttcttcggtggcgcgtgccgccctcgtgcaaaggggatctgtatctcgcacctcagttgttcttggattaccatcaatgagcaagggtggaaaagtgaaatgttcaatggaaggaaagggaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagcatgtcaagcccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatccttttaggtgtatttggtttgatttggtctctctacactgtttacacttctggacttgatgaagatgaagaatctggaatgtctctttaatttttgtctattattttttttttgtcatactataatcaaactttaatgaatttaactacttcttttgatgttgtatctcttacactcttcaattgaagtattgtatttttccttaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24843" stop="23026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24543" g_stop="24408" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23310" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="571" r_length="435" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E732320" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732320" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24543" e_stop="24408"/>
          <exon e_start="23744" e_stop="23310"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATTTTTCCTTCTCCTCTTTCAATAAT</genome_strand>
        <mrna_strand>AAAAGTTAGAAGCTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATTTTTCCTTAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E402239" ref_strand="+" ref_description="SGN-E402239 [PPC-7-K21]">
      <seq>ttgatatcaacaaagaagttgaagttgtgatcattctctctcagtaatacagaaatggcaaccatcactgcttgcaccacaacttcttctgtggcacgtgccgccctcgtgcaaaggggatctgtatcccgcacctcaactattcttggattaccatccatgagcaagggtgaaaaagtgaaatgctcaatggaaggaaagccaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagcatgtcaaacccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatcctttttggtgtatttggtttgatttggtctctctacactgtctacacttctggaattgatgatgatgaagaatctggactctctctttaaactttgtgtattattatgtgatactataatcaactttaactacttctcttgatgttgtatctcttagactcttcaattgaagtattgtatttttccttctccaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24853" stop="23022"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24558" g_stop="24408" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="0.901"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23311" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="566" r_length="418" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E402239" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="1.034" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E402239" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24558" e_stop="24408"/>
          <exon e_start="23744" e_stop="23311"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCCTATCAACAAAAAAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATTTTTCCTTCTCCTCTTTCAATAA</genome_strand>
        <mrna_strand>TTGATATCAAC-AA-AGAAGTT-GAAGTTGTGATCATTCTCTCTCAGTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCTGTGGCACGTGCCGCCCTCGTGCAAAGGGGATCTGTATCCCGCACCTCAACTATTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCCATGAGCAAGGGTGAAAAAGTGAAATGCTCAATGGAAGGAAAGCCAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAACCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTTGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTCTACACTTCTGGAATTGATGATGATGAAGAATCTGGACTCTCTCTTTAAACTTTGTGTATTA------TTATGTGATACTATAATC-AAC---------TTTAACTACTTCTCTTGATGTTGTATCTCTTAGACTCTTCAATTGAAGTATTGTATTTTTCCTTCTCCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733090" ref_strand="+" ref_description="SGN-E733090 [LB03DG09]">
      <seq>caacaaaaaaaagttagaagttgtgatcattctctctcactaatacagaaatggcaaccatcactgcttgcaccacaacttcttcggtggcgcgtgccgccctcgtgcaaaggggatctgtatctcgcacctcagttgttcttggattaccatcaatgagcaagggtggaaaagtgaaatgttcaatggaaggaaagggaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagcatgtcaagcccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatccttttaggtgtatttggtttgatttggtctctctacactgtttacacttctggacttgatgaagatgaagaatctggaatgtctctttaatttttgtctattattttttttttgtcatactataatcaaactttaatgaatttaactacttcttttgatgttgtatctcttacactcttcaattgaagtattgtatttttccttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24851" stop="23026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24551" g_stop="24408" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23311" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="578" r_length="434" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E733090" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733090" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24551" e_stop="24408"/>
          <exon e_start="23744" e_stop="23311"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAAAAAAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATTTTTCCTTCTCCTCTTTCAATAA</genome_strand>
        <mrna_strand>CAACAAAAAAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATTTTTCCTTAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E460290" ref_strand="+" ref_description="SGN-E460290 [cPRO-30-F9]">
      <seq>gttgtgatcattctctctcagtaatacagaaatggcaaccatcactgcttgcaccacaacttcttctgtggcacgtgccgccctcgtgcaaaggggatctgtatcccgcacctcaactattcttggattaccatccatgagcaagggtgaaaaagtgaaatgctcaatggaaggaaagccaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagcatgtcaaacccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatcctttttggtgtatttggtttgatttggtctctctacactgtctacacttctggaattgatgatgatgaagaatctggactctctctttaaactttgtgtattattatgtgatactataatcaactttaactacttctcttgatggtgtatctcctagactcttcaattgaaggatgtatttttccttcctccaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24832" stop="23098"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24532" g_stop="24408" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23311" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="543" r_length="418" r_score="0.889"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E460290" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.029" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E460290" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24532" e_stop="24408"/>
          <exon e_start="23744" e_stop="23311"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATTTTTCCTT-CTCCTCTTTCAATAA</genome_strand>
        <mrna_strand>GTTGTGATCATTCTCTCTCAGTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCTGTGGCACGTGCCGCCCTCGTGCAAAGGGGATCTGTATCCCGCACCTCAACTATTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCCATGAGCAAGGGTGAAAAAGTGAAATGCTCAATGGAAGGAAAGCCAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAACCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTTGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTCTACACTTCTGGAATTGATGATGATGAAGAATCTGGACTCTCTCTTTAAACTTTGTGTATTA------TTATGTGATACTATAATC-AAC---------TTTAACTACTTCTCTTGATGGTGTATCTCCTAGACTCTTCAATTGAAGGA-TGTATTTTTCCTTCCTCCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E611427" ref_strand="+" ref_description="SGN-E611427 [61178]">
      <seq>cttatttgaaatcaacaaagaagttgaagttgtgatcattctctctcagtaatacagaaatggcaaccatcactgcttgcaccacaacttcttctgtggcacgtgccgccctcgtgcaaaggggatctgtatcccgcacctcaactattcttggattaccatccatgagcaagggtggaaaagtgaaatgctcaatggaaggaaagccaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagtatgtcaaacccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatcctttttggtgtatttggtttgatttggtctctctacactgtctacacttctggaattgatgatgatgaagaatctggactctctctttaaactttgtgtattattatgtgatactataatcaactttaactacttctcttgatgttgtatctcttagactcttcaattgaagtattgtatttttccttctccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24850" stop="23022"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24547" g_stop="24408" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="153" r_length="139" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23312" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="570" r_length="417" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E611427" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E611427" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24547" e_stop="24408"/>
          <exon e_start="23744" e_stop="23312"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATTTTTCCTTCTCCTCTTTCAATA</genome_strand>
        <mrna_strand>ACAAAGAAGTT-GAAGTTGTGATCATTCTCTCTCAGTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCTGTGGCACGTGCCGCCCTCGTGCAAAGGGGATCTGTATCCCGCACCTCAACTATTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCCATGAGCAAGGGTGGAAAAGTGAAATGCTCAATGGAAGGAAAGCCAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGTATGTCAAACCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTTGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTCTACACTTCTGGAATTGATGATGATGAAGAATCTGGACTCTCTCTTTAAACTTTGTGTATTA------TTATGTGATACTATAATC-AAC---------TTTAACTACTTCTCTTGATGTTGTATCTCTTAGACTCTTCAATTGAAGTATTGTATTTTTCCTTCTCCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E339082" ref_strand="+" ref_description="SGN-E339082 [cTOF-6-G23]">
      <seq>gcaaccatcactgcttgcaccacaacttcttcggtggcgcgtgccgccctcgtgcaaaggggatctgtatctcgcacctcagttgttcttggattaccatcaatgagcaagggtggaaaagtgaaatgttcaatggaaggaaagggaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagcatgtcaagcccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatccttttaggtgtatttggtttgatttggtctctctacactgtttacacttctggacttgatgaagatgaagaatctggaatgtctctttaatttttgtctattattttttttttgtcatactataatcaaactttaatgaatttaactacttcttttgatgttgtatctcttacactcttcaattgaagtattgtatttnttccttctccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24798" stop="23022"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24498" g_stop="24408" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23312" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="525" r_length="434" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E339082" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339082" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24498" e_stop="24408"/>
          <exon e_start="23744" e_stop="23312"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATTT-TTCCTTCTCCTCTTTCAATA</genome_strand>
        <mrna_strand>GCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATTTNTTCCTTCTCCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E573212" ref_strand="+" ref_description="SGN-E573212 [32487]">
      <seq>caaagaagttgaagttgtgatcattctctctcagtaatacagaaatggcaaccatcactgcttgcaccacaacttcttctgtggcacgtgccgccctcgtgcaaaggggatctgtatcccgcacctcagctgttcttggattaccatccatgagcaagggtggaaaagtgaaatgctcaatggaaggaaagccaaagggtgaatcaaagttgtgaatgggagaatcattgatggcagcagcagtagcagcaagcatgtcaaacccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatcctttttggtgtatttggtttgatttggtctctctacactgtctactcttctggaattgatgatgatgaagaatctggactctctctttaaactttgtgtattattatgtgatactataatcaactttaagtacttcttttgatgttgaatctcttagactctttaattgaagtattgtatttttccttacaacagaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24845" stop="23026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24546" g_stop="24408" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23313" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="553" r_length="415" r_score="0.896"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E573212" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.033" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E573212" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24546" e_stop="24408"/>
          <exon e_start="23744" e_stop="23313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATTTTTCCTTCTCCTCTTTCAAT</genome_strand>
        <mrna_strand>CAAAGAAGTT-GAAGTTGTGATCATTCTCTCTCAGTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCTGTGGCACGTGCCGCCCTCGTGCAAAGGGGATCTGTATCCCGCACCTCAGCTGTTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCCATGAGCAAGGGTGGAAAAGTGAAATGCTCAATGGAAGGAAAGCCAAAGGGTGAATCAAAGTTGTGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAACCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTTGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTCTACTCTTCTGGAATTGATGATGATGAAGAATCTGGACTCTCTCTTTAAACTTTGTGTATTA------TTATGTGATACTATAATC-AACTTTAA-G--------TACTTCTTTTGATGTTGAATCTCTTAGACTCTTTAATTGAAGTATTGTATTTTTCCTT-ACAACAGAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E291544" ref_strand="+" ref_description="SGN-E291544 [cLET-6-C20]">
      <seq>tctctctcactaatacagaaatggcaaccatcactgcttgcaccacaacttcttcggtggcgcgtgccgccctcgtgcaaaggggatctgtatctcgcacctcagttgttcttggattaccatcaatgagcaagggtggaaaagtgaaatgttcaatggaaggaaagggaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagcatgtcaagcccagtagcaatggctttggttgatgaaagaatgagcactgaatgaacagggctaccatttggactcagcaacaatcttcttggttggatccttttaggtgtatttggtttgatttggtctctctacactgtttacacttctggacttgatgaagatgaagaatctggaatgtctctctaatttttgtctattattttttttttgtcatactataatcaaactttaatgaatttaactacttcttttgatgttgtatctcttacactcttcaattgaagtattgtatttttccttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24821" stop="23026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24521" g_stop="24408" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23313" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="546" r_length="432" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E291544" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291544" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24521" e_stop="24408"/>
          <exon e_start="23744" e_stop="23313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATTTTTCCTTCTCCTCTTTCAAT</genome_strand>
        <mrna_strand>TCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAATGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTCTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATTTTTCCTTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E415221" ref_strand="+" ref_description="SGN-E415221 [STM-20-P24]">
      <seq>cttttttgatatcaacaaagaagttgaagttgtgatcattctctctcagtaatacagaaatggcaaccatcactgcttgcaccacaacttcttctgtggcacgtgccgccctcgtgcaaaggggatctgtatcccgcacctcaactattcttggattaccatccatgagcaagggtggaaaagtgaaatgctcaatggaaggaaagccaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagtatgtcaaacccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatcctttttggtgtatttggtttgatttggtctctctacactgtctacacttctggaattgatgatgatgaagaatctggactctctctttaactttgtgtattattatgtgatactataatcaactttaagtacttcttttgatngtgtatctcttagactcttcaattgaagtattgtatttttcctttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24853" stop="23026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24547" g_stop="24408" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="153" r_length="139" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23314" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="566" r_length="413" r_score="0.896"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E415221" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E415221" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24547" e_stop="24408"/>
          <exon e_start="23744" e_stop="23314"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATTTTTCCTTCTCCTCTTTCAA</genome_strand>
        <mrna_strand>ACAAAGAAGTT-GAAGTTGTGATCATTCTCTCTCAGTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCTGTGGCACGTGCCGCCCTCGTGCAAAGGGGATCTGTATCCCGCACCTCAACTATTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCCATGAGCAAGGGTGGAAAAGTGAAATGCTCAATGGAAGGAAAGCCAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGTATGTCAAACCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTTGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTCTACACTTCTGGAATTGATGATGATGAAGAATCTGGACTCTCTCTTTAA-CTTTGTGTATTA------TTATGTGATACTATAATC-AACTTTAA-G--------TACTTCTTTTGATNGTGTATCTCTTAGACTCTTCAATTGAAGTATTGTATTTTTCCTT-TAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E290087" ref_strand="+" ref_description="SGN-E290087 [cLET-5-D15]">
      <seq>ttggttggatccttttaggtgtatttggtttgatttggtctctctacactgtttacacttctggacttgatgaagatgaagaatctggaatgtctctttaatttttgtctattattttttttttgtcatactataatcaaactttaatgaatttaactacttcttttgatgttgtatctcttacactcttcaattgaagtattgtatttttccttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="23840" stop="23026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23540" g_stop="23314" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E290087" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>227</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290087" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23540" e_stop="23314"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATTTTTCCTTCTCCTCTTTCAA</genome_strand>
        <mrna_strand>TTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATTTTTCCTTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E339527" ref_strand="-" ref_description="SGN-E339527 [cTOE-16-A20]">
      <seq>cctatcaacaaaaaaaagttagaagttgtgatcattctctctcactaatacagaaatggcaaccatcactgcttgcaccacaacttcttcggtggcgcgtgccgccctcgtgcaaaggggatctgtatctcgcacctcagttgttcttggattaccatcaatgagcaagggtggaaaagtgaaatgttcaatggaaggaaagggaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagcatgtcaagcccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatccttttaggtgtatttggtttgatttggtctctctacactgtttacacttctggacttgatgaagatgaagaatctggaatgtctctttaatttttgtctattattttttttttgtcatactataatcaaactttaatgaatttaactacttcttttgatgttgtatctcttacactcttcaattgaagtattgtatttttccttctcctctttcaaaaaaaaaaaaaaaaaaactcgagacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24856" stop="23011"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24556" g_stop="24408" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23315" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="579" r_length="430" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="580" polyA_stop="598"/>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E339527" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339527" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="24556" e_stop="24408"/>
          <exon e_start="23744" e_stop="23315"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTATCAACAAAAAAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATTTTTCCTTCTCCTCTTTCA</genome_strand>
        <mrna_strand>CCTATCAACAAAAAAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATTTTTCCTTCTCCTCTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E373032" ref_strand="+" ref_description="SGN-E373032 [TUS-32-P9](-)">
      <seq>caacaaaaaaaagttagaagttgtgatcattctctctcactaatacagaaatggcaaccatccctgcttgccccccaactttttcggtggggggtgccgcccttgtgcaaaggggatttgtatttcgcccctcagttgtttttggattaccatcaatgagcaagggtggaaaagtgaaatgttcaatggaaggaaagggaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagcatgtcaagcccagtaacaatggctttggttgatgaaaaaatgagccctgaaggaacaggggtaccctttggactcagcaacaatttttttgggtggatccttttagggggatttggtttgatttggtctctttaccctgtttacccttttggacttgatgaaaatgaaaaatttggaaagtttctttaatttttgtttattattttttttttgtcatactataatcaaactttaatgaatttaactacttcttttgatgttggattttttaccctcttcaattgaagtattgtatttttccttttcctctttcccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24851" stop="23016"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24551" g_stop="24408" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.924"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23315" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="574" r_length="430" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="576" polyA_stop="610"/>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E373032" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373032" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24551" e_stop="24408"/>
          <exon e_start="23744" e_stop="23315"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAAAAAAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATTTTTCCTTCTCCTCTTTCA</genome_strand>
        <mrna_strand>CAACAAAAAAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCCCTGCTTGCCCCCCAACTTTTTCGGTGGGGGGTGCCGCCCTTGTGCAAAGGGGATTTGTATTTCGCCCCTCAGTTGTTTTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAACAATGGCTTTGGTTGATGAAAAAATGAGCCCTGAAGGAACAGGGGTACCCTTTGGACTCAGCAACAATTTTTTTGGGTGGATCCTTTTAGGGGGATTTGGTTTGATTTGGTCTCTTTACCCTGTTTACCCTTTTGGACTTGATGAAAATGAAAAATTTGGAAAGTTTCTTTAATTTTTGTTTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGGATTTTTTACCCTCTTCAATTGAAGTATTGTATTTTTCCTTTTCCTCTTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E373033" ref_strand="+" ref_description="SGN-E373033 [TUS-32-P9]">
      <seq>aacaaaaaaaagttagaagttgtgatcattctctctcactaatacagaaatggcaaccatcactgcttgcaccacaacttcttcggtggcgcgtgccgccctcgtgcaaaggggatctgtatctcgcacctcagttgttcttggattaccatcaatgagcaagggtggaaaagtgaaatgttcaatggaaggaaagggaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagcatgtcaagcccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatccttttaggtgtatttggtttgatttggtctctctacactgtttacacttctggacttgatgaagatgaagaatctggaatgtctctttaatttttgtctattattttttttttgtcatactataatcaaactttaatgaatttaactacttcttttgatgttgtatctcttacactcttcaattgaagtattgtatttttccttctcctctttctnannanaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24850" stop="23016"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24550" g_stop="24408" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23315" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="573" r_length="430" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="578" polyA_stop="599"/>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E373033" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373033" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24550" e_stop="24408"/>
          <exon e_start="23744" e_stop="23315"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAAAAAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATTTTTCCTTCTCCTCTTTCA</genome_strand>
        <mrna_strand>AACAAAAAAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATTTTTCCTTCTCCTCTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733326" ref_strand="+" ref_description="SGN-E733326 [LB04CC10]">
      <seq>caataaaagttagaagttgtgatcattctctctcactaatacagaaatggcaaccatcactgcttgcaccacaacttcttcggtggcgcgtgccgccctcgtgcaaaggggatctgtatctcgcacctcagttgttcttggattaccatcaatgagcaagggtggaaaagtgaaatgttcaatggaaggaaagggaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagcatgtcaagcccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatccttttaggtgtatttggtttgatttggtctctctacactgtttacacttctggacttgatgaagatgaagaatctggaatgtctctttaatttttgtctattattttttttttgtcatactataatcaaactttaatgaatttaactacttcttttgatgttgtatctcttacactcttcaattgaagtattgtatttttccttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24846" stop="23025"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24547" g_stop="24408" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23315" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="570" r_length="430" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E733326" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733326" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24547" e_stop="24408"/>
          <exon e_start="23744" e_stop="23315"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATTTTTCCTTCTCCTCTTTCA</genome_strand>
        <mrna_strand>CAATAAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATTTTTCCTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E296230" ref_strand="+" ref_description="SGN-E296230 [cLET-24-F11]">
      <seq>aaagttagaagttgtgatcattctctctcactaatacagaaatggcaaccatcactgcttgcaccacaacttcttcggtggcgcgtgccgccctcgtgcaaaggggatctgtatctcgcacctcagttgttcttggattaccatcaatgagcaagggtggaaaagtgaaatgttcaatggaaggaaagggaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagcatgtcaagcccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatccttttaggtgtatttggtttgatttggtctctctacactgtttacacttctggacttgatgaagatgaagaatctggaatgtctctttaatttttgtctattatttttttttttgtcatactataatcaaactttaatgaatttaactacttcttttgatgttgtatctcttacactcttcaattgaagtattgtatttttccttctcctcannnnaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24842" stop="23020"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24542" g_stop="24408" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23315" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="566" r_length="431" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="567" polyA_stop="610"/>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E296230" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="0.926" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296230" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24542" e_stop="24408"/>
          <exon e_start="23744" e_stop="23315"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTA-TTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATTTTTCCTTCTCCTCTTTCA</genome_strand>
        <mrna_strand>AAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATTTTTCCTTCTCCTCANNNN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E253712" ref_strand="+" ref_description="SGN-E253712 [cLEG-32-G3]">
      <seq>aagttagaagttgtgatcattctctctcactaatacagaaatggcaaccatcactgcttgcaccacaacttcttcggtggcgcgtgccgccctcgtgcaaaggggatctgtatctcgcacctcagttgttcttggattaccatcaatgagcaagggtggaaaagtgaaatgttcaatggaaggaaagggaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagcatgtcaagcccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatccttttaggtgtatttggtttgatttggtctctctacactgtttacacttctggacttgatgaagatgaagaatctggaatgtctctttaatttttgtctattatttttttttttgtcatactataatcaaactttaatgaatttaactacttcttttgatgttgtatctcttacactcttcaattgaagtattgtatttttccttctcctctttcaaaanaaaaaaannaaaanaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24841" stop="23011"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24541" g_stop="24408" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23315" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="565" r_length="431" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="566" polyA_stop="576"/>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E253712" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E253712" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24541" e_stop="24408"/>
          <exon e_start="23744" e_stop="23315"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTA-TTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATTTTTCCTTCTCCTCTTTCA</genome_strand>
        <mrna_strand>AAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATTTTTCCTTCTCCTCTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733245" ref_strand="+" ref_description="SGN-E733245 [LB04BE01]">
      <seq>cgattctctctcactaatacagaaatggcaaccatcactgcttgcaccacaacttcttcggtggcgcgtgccgccctcgtgcaaaggggatctgtatctcgcacctcagttgttcttggattaccatcaatgagcaagggtggaaaagtgaaatgttcaatggaaggaaagggaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagcatgtcaagcccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatccttttaggtgtatttggtttgatttggtctctctacactgtttacacttctggacttgatgaagatgaagaatctggaatgtctctttaatttttgtctattattttttttttttgtcatactataatcaaactttaatgaatttaactacttcttttgatgttgtatctcttacactcttcaattgaagtattgtatttttccttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24823" stop="23026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24525" g_stop="24408" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23315" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="550" r_length="432" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E733245" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733245" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24525" e_stop="24408"/>
          <exon e_start="23744" e_stop="23315"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTA--TTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATTTTTCCTTCTCCTCTTTCA</genome_strand>
        <mrna_strand>CGATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATTTTTCCTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E622604" ref_strand="+" ref_description="SGN-E622604 [72973]">
      <seq>actgcttgcaccacaacttcttctgtggcacgtgccgccctcgtgcaaaggggatctgtatcccgcacctcagctgttcttggattaccatccatgagcaagggtggaaaagtgaaatgctcaatggaaggaaagccaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagcatgtcaaacccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatcctttttggtgtatttggtttgatttggtctctctacactgtctactcttctggaattgatgatgatgaagaatctggactctctctttaaactttgtgtattattatgtgatactataatcaactttaagtacttcttttgatgttgaatctcttagactctttaattgaagtattgtatttttccttctcctctttctagctacctctttcaataatccttcaatttgtgatgcattaaacattgaacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24789" stop="22983"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24489" g_stop="24408" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23315" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="496" r_length="414" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E622604" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E622604" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24489" e_stop="24408"/>
          <exon e_start="23744" e_stop="23315"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATTTTTCCTTCTCCTCTTTCA</genome_strand>
        <mrna_strand>ACTGCTTGCACCACAACTTCTTCTGTGGCACGTGCCGCCCTCGTGCAAAGGGGATCTGTATCCCGCACCTCAGCTGTTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCCATGAGCAAGGGTGGAAAAGTGAAATGCTCAATGGAAGGAAAGCCAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAACCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTTGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTCTACTCTTCTGGAATTGATGATGATGAAGAATCTGGACTCTCTCTTTAAACTTTGTGTATTA------TTATGTGATACTATAATC-AACTTTAA-G--------TACTTCTTTTGATGTTGAATCTCTTAGACTCTTTAATTGAAGTATTGTATTTTTCCTTCTCCTCTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E234499" ref_strand="+" ref_description="SGN-E234499 [cLEL-6-B16](-)">
      <seq>ggccccagggttaatcaaagttgggaatgggaaaatccttgatggcagcagcagtagcagcaagcatgtcaagcccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttattggttggagcctttaaggtgtatttggtttgatatggtctcactacactgtttacacttctggacttgatgaagatgaagaatctggaatgtctctttaatttttgtctaaaattttttttttgtcatgcaataatcaaactttaatgaatttaacgacttcttttgatgttgtatctcttacactcttcaattgaagtattgtatttttccttctcctctttccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="23987" stop="23011"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23693" g_stop="23315" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="379" r_length="379" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="380" polyA_stop="415"/>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E234499" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>379</cumulative_length_of_scored_exons>
        <coverage percentage="0.913" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E234499" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23693" e_stop="23315"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATTTTTCCTTCTCCTCTTTCA</genome_strand>
        <mrna_strand>GGCCCCAGGGTTAATCAAAGTTGGGAATGGGAAAATCCTTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTATTGGTTGGAGCCTTTAAGGTGTATTTGGTTTGATATGGTCTCACTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTAAAATTTTTTTTTTGTCATGCAATAATCAAACTTTAATGAATTTAACGACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATTTTTCCTTCTCCTCTTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E235171" ref_strand="+" ref_description="SGN-E235171 [cLEL-6-B16](-)">
      <seq>gccccagggtaatcaaagttgggaatgggagaatccttgatggcagcagcagtagcagcaagcatgtcaagcccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggagccctttaggtgtatttggtttgaaatggtccctctacactgtttacacttctggacttgatgaagatgaagaatctggaatgtctccttaaattttgtgtaataatttttttttgtcatactataatcaaactttaatgaatttaacgacttcttttgaagttgtatctctgacactcttcaattgaagtattgtatttttccttctcctctttccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="23987" stop="23011"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23692" g_stop="23315" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="377" r_length="377" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="378" polyA_stop="413"/>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E235171" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>378</cumulative_length_of_scored_exons>
        <coverage percentage="0.915" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235171" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23692" e_stop="23315"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATTTTTCCTTCTCCTCTTTCA</genome_strand>
        <mrna_strand>GCCCCAGGGT-AATCAAAGTTGGGAATGGGAGAATCCTTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGAGCCCTTTAGGTGTATTTGGTTTGAAATGGTCCCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCCTTAAATTTTGTGTAATAATTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACGACTTCTTTTGAAGTTGTATCTCTGACACTCTTCAATTGAAGTATTGTATTTTTCCTTCTCCTCTTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E293186" ref_strand="+" ref_description="SGN-E293186 [cLET-12-E9]">
      <seq>tgataatagccctatcaacaaaaaaaagttagaagttgtgatcattctctctcactaatacagaaatggcaaccatcactgcttgcaccacaacttcttcggtggcgcgtgccgccctcgtgcaaaggggatctgtatctcgcacctcagttgttcttggattaccatcaatgagcaagggtggaaaagtgaaatgttcaatggaaggaaagggaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagcatgtcaagcccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatccttttaggtgtatttggtttgatttggtctctctacactgtttacacttctggacttgatgaagatgaagaatctggaatgtctctttaatttttgtctattattttttttttgtcatactataatcaaactttaatgaatttaactacttcttttgatgttgtatctcttacactcttcaattgaagtattgtatttttccttctcctctttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24866" stop="23016"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24566" g_stop="24408" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23316" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="588" r_length="429" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E293186" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293186" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24566" e_stop="24408"/>
          <exon e_start="23744" e_stop="23316"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATAATAGCCCTATCAACAAAAAAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATTTTTCCTTCTCCTCTTTC</genome_strand>
        <mrna_strand>TGATAATAGCCCTATCAACAAAAAAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATTTTTCCTTCTCCTCTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E572680" ref_strand="+" ref_description="SGN-E572680 [31872]">
      <seq>caacaaagaagttgaagttgtgatcattctctctcagtaatacagaaatggcaaccatcactgcttgcaccacaacttcttctgtggcacgtgccgccctcgtgcaaaggggatctgtatcccgcacctcaactattcttggattaccatccatgagcaagggtggaaaagtgaaatgctcaatggaaggaaagccaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagtatgtcaaacccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatcctttttggtgtatttggtttgatttggtctctctacactgtctacacttctggaattgatgatgatgaagaatctggactctctctttaaactttgtgtattattatgtgatactataatcaactttaagtacttcttttgatgttgtatctcttagactcttcaattgaagtattgtatttttccttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24848" stop="23026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24548" g_stop="24408" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="0.915"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23316" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="554" r_length="413" r_score="0.897"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E572680" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.029" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E572680" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24548" e_stop="24408"/>
          <exon e_start="23744" e_stop="23316"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAAAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATTTTTCCTTCTCCTCTTTC</genome_strand>
        <mrna_strand>CAACAAAGAAGTTGAAGTTGTGATCATTCTCTCTCAGTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCTGTGGCACGTGCCGCCCTCGTGCAAAGGGGATCTGTATCCCGCACCTCAACTATTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCCATGAGCAAGGGTGGAAAAGTGAAATGCTCAATGGAAGGAAAGCCAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGTATGTCAAACCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTTGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTCTACACTTCTGGAATTGATGATGATGAAGAATCTGGACTCTCTCTTTAAACTTTGTGTATTA------TTATGTGATACTATAATC-AACTTTAA-G--------TACTTCTTTTGATGTTGTATCTCTTAGACTCTTCAATTGAAGTATTGTATTTTTCCTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E290052" ref_strand="+" ref_description="SGN-E290052 [cLET-5-C14]">
      <seq>aaagttagaagttgtgatcattctctctcactaatacagaaatggcaaccatcactgcttgcaccacaacttcttcggtggcgcgtgccgccctcgtgcaaaggggatctgtatctcgcacctcagttgttcttggattaccatcaatgagcaagggtggaaaagtgaaatgttcaatggaaggaaagggaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagcatgtcaagcccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatccttttaggtgtattaggtttgatttggtctctctacactgtttacacttctggacttgatgaagatgaacaatctggaatgtctctttaattattgtctattattttatttttggcatactataatcaaactttaatgaatctaactacttcttttgatgttgtatctcttacactcttcaattgaagtattgtatttttccttctcctctttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24842" stop="23016"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24542" g_stop="24408" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23316" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="564" r_length="429" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E290052" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290052" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24542" e_stop="24408"/>
          <exon e_start="23744" e_stop="23316"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATTTTTCCTTCTCCTCTTTC</genome_strand>
        <mrna_strand>AAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTAGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAACAATCTGGAATGTCTCTTTAATTATTGTCTATTATTTTATTTTTGGCATACTATAATCAAACTTTAATGAATCTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATTTTTCCTTCTCCTCTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E296661" ref_strand="+" ref_description="SGN-E296661 [cLET-39-K1]">
      <seq>aaaaaaaagttagaagttgtgatcattctctctcactaatacagaaatggcaaccatcactgcttgcaccacaacttcttcggtggcgcgtgccgccctcgtgcaaaggggatctgtatctcgcacctcagttgttcttggattaccatcaatgagcaagggtggaaaagtgaaatgttcaatggaaggaaagggaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagcatgtcaagcccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatccttttaggtgtatttggtttgatttggtctctctacactgtttacacttctggacttgatgaagatgaagaatctggaatgtctctttaatttttgtctattattttttttttgtcatactataatcaaactttaatgaatttaactacttcttttgatgttgtatctcttacactcttcaattgaagtattgtatttttccttctcctcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24847" stop="23017"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24547" g_stop="24408" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23317" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="568" r_length="428" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E296661" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296661" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24547" e_stop="24408"/>
          <exon e_start="23744" e_stop="23317"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATTTTTCCTTCTCCTCTTT</genome_strand>
        <mrna_strand>AAAAAAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATTTTTCCTTCTCCTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E292012" ref_strand="+" ref_description="SGN-E292012 [cLET-7-J5]">
      <seq>aaaaagttagaagttgtgatcattctctctcactaatacagaaatggcaaccatcactgcttgcaccacaacttcttcggtggcgcgtgccgccctcgtgcaaaggggatctgtatctcgcacctcagttgttcttggattaccatcaatgagcaagggtggaaaagtgaaatgttcaatggaaggaaagggaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagcatgtcaagcccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatccttttaggtgtatttggtttgatttggtctctctacactgtttacacttctggacttgatgaagatgaagaatctggaatgtctctttaatttttgtctattattttttttttgtcatactataatcaaactttaatgaatttaactacttcttttgatgttgtatctcttacactcttcaattgaagtattgtatttttcctannnaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24844" stop="23027"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24544" g_stop="24408" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23317" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="565" r_length="428" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E292012" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292012" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24544" e_stop="24408"/>
          <exon e_start="23744" e_stop="23317"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATTTTTCCTTCTCCTCTTT</genome_strand>
        <mrna_strand>AAAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATTTTTCCTANNNAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E610873" ref_strand="+" ref_description="SGN-E610873 [60616]">
      <seq>atcttatttgaaatcaacaaagaagttgaagttgtgatcattctctctcagtaatacagaaatggcaaccatcactgcttgcaccacaacttcttctgtggcacgtgccgccctcgtgcaaaggggatctgtatcccgcacctcaactattcttggattaccatccatgagcaagggtggaaaagtgaaatgctcaatggaaggaaagccaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagtatgtcaaacccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatcctttttggtgtatttggtttgatttggtctctctacactgtctacacttctggaattgatgatgatgaagaatctggactctctctttaaactttgtgtattattatgtgatactataatcaactttaactacttctcttgatgttgtatctcttagactcttcaattgaagtattgtatttttccttctccaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24850" stop="23022"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24547" g_stop="24408" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="155" r_length="139" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23318" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="566" r_length="411" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E610873" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E610873" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24547" e_stop="24408"/>
          <exon e_start="23744" e_stop="23318"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATTTTTCCTTCTCCTCTT</genome_strand>
        <mrna_strand>ACAAAGAAGTT-GAAGTTGTGATCATTCTCTCTCAGTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCTGTGGCACGTGCCGCCCTCGTGCAAAGGGGATCTGTATCCCGCACCTCAACTATTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCCATGAGCAAGGGTGGAAAAGTGAAATGCTCAATGGAAGGAAAGCCAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGTATGTCAAACCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTTGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTCTACACTTCTGGAATTGATGATGATGAAGAATCTGGACTCTCTCTTTAAACTTTGTGTATTA------TTATGTGATACTATAATC-AAC---------TTTAACTACTTCTCTTGATGTTGTATCTCTTAGACTCTTCAATTGAAGTATTGTATTTTTCCTTCTCCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E282904" ref_strand="+" ref_description="SGN-E282904 [cLER-15-H18]">
      <seq>agttagaagttgtgatcattctctctcactaatacagaaatggcaaccatcactgcttgcaccacaacttcttcggtggcgcgtgccgccctcgtgcaaaggggatctgtatctcgcacctcagttgttcttggattaccatcaatgagcaagggtggaaaagtgaaatgttcaatggaaggaaagggaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagcatgtcaagcccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatccttttaggtgtatttggtttgatttggtctctctacactgtttacacttctggacttgatgaagatgaagaatctggaatgtctctttaatttttgtctattattttttttttgtcatactataatcaaactttaatgaatttaactacttcttttgatgttgtatctcttacactcttcaattgaagtattgtatttttccttaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24840" stop="23026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24540" g_stop="24408" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23318" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="560" r_length="427" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E282904" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282904" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24540" e_stop="24408"/>
          <exon e_start="23744" e_stop="23318"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATTTTTCCTTCTCCTCTT</genome_strand>
        <mrna_strand>AGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATTTTTCCTTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E692851" ref_strand="+" ref_description="SGN-E692851 [LH_Ea09M17]">
      <seq>cagtaaaaaattacaagttgtgatcattctctctcactaatccctaaatggcaaccatcactgcttgcaccacaacttcttcagtggcgcgtgccgccctcgtgcaaaggggatctgtatctcgcacctcggttgttcttggattaccatcaatgagcaagggtggaaaagtgaaatgttcaatggaaggaaaaggaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagcatgtcaaacccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatcctttttggtgtatttggtttgatttggtctctctacactgtttacacttctggacttgatgaagatgaagaatctggaatgtctctttaatttttgtcatactataatcaaactttaattaatttaactacttcttttgatgttgtatctcttacactcttcaattgaagtactgtatttttcctaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24845" stop="23027"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24548" g_stop="24408" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="0.936"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23319" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="549" r_length="408" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E692851" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.033" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E692851" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24548" e_stop="24408"/>
          <exon e_start="23744" e_stop="23319"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAAAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATTTTTCCTTCTCCTCT</genome_strand>
        <mrna_strand>CAGTAAAAAATTACAAGTTGTGATCATTCTCTCTCACTAATCCCTAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCAGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCGGTTGTTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAAGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAACCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTTGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTC---------T-T-TA--A-----TTTTTGTCATACTATAATCAAACTTTAATTAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTACTGTATTTTTCCTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E616095" ref_strand="-" ref_description="SGN-E616095 [65901]">
      <seq>ttgaaatcaacaaagaagttgaagttgtgatcattctctctcagtaatacagaaatggcaaccatcactgcttgcaccacaacttcttctgtggcacgtgccgccctcgtgcaaaggggatctgtatcccgcacctcaactattcttggattaccatccatgagcaagggtggaaaagtgaaatgctcaatggaaggaaagccaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagtatgtcaaacccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatcctttttggtgtatttggtttgatttggtctctctacactgtctacacttctggaattgatgatgatgaagaatctggactctctctttaaactttgtgtattattatgtgatactataatcaactttaactacttctcttgatgttgtatctcttagactcttcaattgaagtattgtatttttccttctccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24850" stop="23022"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24555" g_stop="24408" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="0.885"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23320" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="557" r_length="409" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E616095" ref_strand="-">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.029" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E616095" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="24555" e_stop="24408"/>
          <exon e_start="23744" e_stop="23320"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATCAACAAAAAAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATTTTTCCTTCTCCTC</genome_strand>
        <mrna_strand>TTGAAATCAACAAAGAAGTTGAAGTTGTGATCATTCTCTCTCAGTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCTGTGGCACGTGCCGCCCTCGTGCAAAGGGGATCTGTATCCCGCACCTCAACTATTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCCATGAGCAAGGGTGGAAAAGTGAAATGCTCAATGGAAGGAAAGCCAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGTATGTCAAACCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTTGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTCTACACTTCTGGAATTGATGATGATGAAGAATCTGGACTCTCTCTTTAAACTTTGTGTATTA------TTATGTGATACTATAATC-AAC---------TTTAACTACTTCTCTTGATGTTGTATCTCTTAGACTCTTCAATTGAAGTATTGTATTTTTCCTTCTCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E400790" ref_strand="+" ref_description="SGN-E400790 [PPC-2-K15]">
      <seq>tcttatttgatatcaacaaagaagttgaagttgtgatcattctctctcagtaatacagaaatggcaaccatcactgcttgcaccacaacttcttctgtggcacgtgccgccctcgtgcaaaggggatctgtatcccgcacctcaactattcttggattaccatccatgagcaagggtggaaaagtgaaatgctcaatggaaggaaagccaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagtatgtcaaacccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatcctttttggtgtatttggtttgatttggtctctctacactgtctacacttctggaattgatgatgatgaagaatctggactctctctttaaactttgtgtattattatgtgatactataatcaactttaagtacttcttttgatgttgtatctcttagactcttcaattgaagtattgtatttttccttaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24853" stop="23026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24547" g_stop="24408" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="154" r_length="139" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23321" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="562" r_length="408" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E400790" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E400790" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24547" e_stop="24408"/>
          <exon e_start="23744" e_stop="23321"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATTTTTCCTTCTCCT</genome_strand>
        <mrna_strand>ACAAAGAAGTT-GAAGTTGTGATCATTCTCTCTCAGTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCTGTGGCACGTGCCGCCCTCGTGCAAAGGGGATCTGTATCCCGCACCTCAACTATTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCCATGAGCAAGGGTGGAAAAGTGAAATGCTCAATGGAAGGAAAGCCAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGTATGTCAAACCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTTGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTCTACACTTCTGGAATTGATGATGATGAAGAATCTGGACTCTCTCTTTAAACTTTGTGTATTA------TTATGTGATACTATAATC-AACTTTAA-G--------TACTTCTTTTGATGTTGTATCTCTTAGACTCTTCAATTGAAGTATTGTATTTTTCCTTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E554497" ref_strand="+" ref_description="SGN-E554497 [cTSC-4-H6]">
      <seq>cctatcaacaaaaaaaagttagaagttgtgatcattctctctcactaatacagaaatggcaaccatcactgcttgcaccacaacttcttcggtggcgcgtgccgccctcgtgcaaaggggatctgtatctcgcacctcagttgttcttggattaccatcaatgagcaagggtggaaaagtgaaatgttcaatggaaggaaagggaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagcatgtcaagcccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatccttttaggtgtatttggtttgatttggtctctctacactgtttacacttctggacttgatgaagatgaagaatctggaatgtctctttaatttttgtctattattttttttttgtcatactataatcaaactttaatgaatttaactacttcttttgatgttgtatctcttacactcttcaattgaagtattgtatttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24856" stop="5958"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24556" g_stop="24408" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23322" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="572" r_length="423" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E554497" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554497" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24556" e_stop="24408"/>
          <exon e_start="23744" e_stop="23322"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTATCAACAAAAAAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATTTTTCCTTCTCC</genome_strand>
        <mrna_strand>CCTATCAACAAAAAAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E555441" ref_strand="+" ref_description="SGN-E555441 [cTSC-3-H6]">
      <seq>cctatcaacaaaaaaaagttagaagttgtgatcattctctctcactaatacagaaatggcaaccatcactgcttgcaccacaacttcttcggtggcgcgtgccgccctcgtgcaaaggggatctgtatctcgcacctcagttgttcttggattaccatcaatgagcaagggtggaaaagtgaaatgttcaatggaaggaaagggaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagcatgtcaagcccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatccttttaggtgtatttggtttgatttggtctctctacactgtttacacttctggacttgatgaagatgaagaatctggaatgtctctttaatttttgtctattattttttttttgtcatactataatcaaactttaatgaatttaactacttcttttgatgttgtatctcttacactcttcaattgaagtattgtatttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24856" stop="5958"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24556" g_stop="24408" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23322" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="572" r_length="423" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E555441" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E555441" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24556" e_stop="24408"/>
          <exon e_start="23744" e_stop="23322"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTATCAACAAAAAAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATTTTTCCTTCTCC</genome_strand>
        <mrna_strand>CCTATCAACAAAAAAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E458948" ref_strand="+" ref_description="SGN-E458948 [cPRO-32-L8]">
      <seq>agaaatggcaaccatcactgcttgcaccacaacttcttctgtggcacgtgccgccctcgtgcaaaggggatctgtatcccgcacctcaactattcttggattaccatccatgagcaagggtggaaaagtgaaatgctcaatggaaggaaagccaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagtatgtcaaacccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatcctttttggtgtatttggtttgatttggtctctctacactgtctacacttctggaattgatgatgatgaagaatctggactctctctttaaactttgtgtattattatgtgatactataatcaactttaagtacttcttttgatgttgtatctcttagactcttcaattgaagtattgtatttttccttctcaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24805" stop="23023"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24505" g_stop="24408" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23323" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="504" r_length="406" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="505" polyA_stop="527"/>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E458948" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E458948" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24505" e_stop="24408"/>
          <exon e_start="23744" e_stop="23323"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATTTTTCCTTCTC</genome_strand>
        <mrna_strand>AGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCTGTGGCACGTGCCGCCCTCGTGCAAAGGGGATCTGTATCCCGCACCTCAACTATTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCCATGAGCAAGGGTGGAAAAGTGAAATGCTCAATGGAAGGAAAGCCAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGTATGTCAAACCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTTGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTCTACACTTCTGGAATTGATGATGATGAAGAATCTGGACTCTCTCTTTAAACTTTGTGTATTA------TTATGTGATACTATAATC-AACTTTAA-G--------TACTTCTTTTGATGTTGTATCTCTTAGACTCTTCAATTGAAGTATTGTATTTTTCCTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E398412" ref_strand="+" ref_description="SGN-E398412 [TUS-45-A18]">
      <seq>caaaaaaaagttagaagttgtgatcattctctctcactaatacagaaatggcaaccatcactgcttgcaccacaacttcttcggtggcgcgtgccgccctcgtgcaaaggggatctgtatctcgcacctcagttgttcttggattaccatcaatgagcaagggtggaaaagtgaaatgttcaatggaaggaaagggaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagcatgtcaagcccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatccttttaggtgtatttggtttgatttggtctctctacactgtttacacttctggacttgatgaagatgaagaatctggaatgtctctttaatttttgtctattattttttttttgtcatactataatcaaactttaatgaatttaactacttcttttgatgttgtatctcttacactcttcaattgaaatattgtatttttccttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24848" stop="23026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24548" g_stop="24408" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23324" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="562" r_length="421" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E398412" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E398412" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24548" e_stop="24408"/>
          <exon e_start="23744" e_stop="23324"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAAAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATTTTTCCTTCT</genome_strand>
        <mrna_strand>CAAAAAAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAATATTGTATTTTTCCTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E615240" ref_strand="+" ref_description="SGN-E615240 [65036]">
      <seq>cttatttgatatcaacaaagaagttgaagttgtgatcattctctctcagtaatacagaaatggcaaccatcactgcttgcaccacaacttcttctgtggcacgtgccgccctcgtgcaaaggggatctgtatcccgcacctcaactattcttggattaccatccatgagcaagggtggaaaagtgaaatgctcaatggaaggaaagccaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagtatgtcaaacccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatcctttttggtgtatttggtttgatttggtctctctacactgtctacacttctggaattgatgatgatgaagaatctggactctctctttaaactttgtgtattattatgtgatactataatcaactttaagtacttcttttgatgttgtatctcttagactcttcaattgaagtattgtatttttccttctaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24853" stop="23024"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24547" g_stop="24408" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="153" r_length="139" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23324" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="558" r_length="405" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="559" polyA_stop="588"/>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E615240" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E615240" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24547" e_stop="24408"/>
          <exon e_start="23744" e_stop="23324"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATTTTTCCTTCT</genome_strand>
        <mrna_strand>ACAAAGAAGTT-GAAGTTGTGATCATTCTCTCTCAGTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCTGTGGCACGTGCCGCCCTCGTGCAAAGGGGATCTGTATCCCGCACCTCAACTATTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCCATGAGCAAGGGTGGAAAAGTGAAATGCTCAATGGAAGGAAAGCCAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGTATGTCAAACCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTTGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTCTACACTTCTGGAATTGATGATGATGAAGAATCTGGACTCTCTCTTTAAACTTTGTGTATTA------TTATGTGATACTATAATC-AACTTTAA-G--------TACTTCTTTTGATGTTGTATCTCTTAGACTCTTCAATTGAAGTATTGTATTTTTCCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E296167" ref_strand="+" ref_description="SGN-E296167 [cLET-24-L12]">
      <seq>aaaaaaaagttagaagttgtgatcattctctctcactaatacagaaatggcaaccatcactgcttgcaccacaacttcttcggtggcgcgtgccgccctcgtgcaaaggggatctgtatctcgcacctcagttgttcttggattaccatcaatgagcaagggtggaaaagtgaaatgttcaatggaaggaaagggaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagcatgtcaagcccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatccttttaggtgtatttggtttgatttggtctctctacactgtttacacttctggacttgatgaagatgaagaatctggaatgtctctttaatttttgtctattattttttttttgtcatactataatcaaactttaatgaatttaactacttcttttgatgttgtatctcttacactcttcaattgaagtattgtatttttccttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24847" stop="23026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24547" g_stop="24408" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23324" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="561" r_length="421" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E296167" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296167" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24547" e_stop="24408"/>
          <exon e_start="23744" e_stop="23324"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATTTTTCCTTCT</genome_strand>
        <mrna_strand>AAAAAAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATTTTTCCTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E222744" ref_strand="+" ref_description="SGN-E222744 [cLEL-16-N16](-)">
      <seq>gggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagcatgtcaagcccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatccttttaggtgtatttggtttgatttggtctctctacactgtttacacttctggacttgatgaagatgaagaatctggaatgtctctttaatttttgtctattatttttttttttgtcatactataatcaaactttaatgaatttaactacttcttttgatgttgtatctcttacactcttcaattgaagtattgtatttttccttctaaaaaaaaaaaaaaaaaaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="23986" stop="23024"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23686" g_stop="23324" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="364" r_length="364" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="365" polyA_stop="384"/>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E222744" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>363</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E222744" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23686" e_stop="23324"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTA-TTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATTTTTCCTTCT</genome_strand>
        <mrna_strand>GGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATTTTTCCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E292025" ref_strand="+" ref_description="SGN-E292025 [cLET-7-N7]">
      <seq>aaaagttagaagttgtgatcattctctctcactaatacagaaatggcaaccatcactgcttgcaccacaacttcttcggtggcgcgtgccgccctcgtgcaaaggggatctgtatctcgcacctcagttgttcttggattaccatcaatgagcaagggtggaaaagtgaaatgttcaatggaaggaaagggaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagcatgtcaagcccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatccttttaggtgtatttggtttgatttggtctctctacactgtttacacttctggacttgatgaagatgaagaatctggaatgtctctttaatttttgtctattattttttttttgtcatactataatcaaactttaatgaatttaactacttcttttgatgttgtatctcttacactcttcaattgaagtattgtatttttccttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24843" stop="23025"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24543" g_stop="24408" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23325" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="556" r_length="420" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E292025" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292025" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24543" e_stop="24408"/>
          <exon e_start="23744" e_stop="23325"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATTTTTCCTTC</genome_strand>
        <mrna_strand>AAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATTTTTCCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E415222" ref_strand="-" ref_description="SGN-E415222 [STM-20-P24]">
      <seq>cttatttgatatcaacaaagaagttgaagttgtgatcattctctctcagtaatacagaaatggcaaccatcactgcttgcaccacaacttcttctgtggcacgtgccgccctcgtgcaaaggggatctgtatcccgcacctcaactattcttggattaccatccatgagcaagggtggaaaagtgaaatgctcaatggaaggaaagccaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagtatgtcaaacccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatcctttttggtgtatttggtttgatttggtctctctacactgtctacacttctggaattgatgatgatgaagaatctggactctctctttaaactttgtgtattattatgtgatactataatcaactttaagtacttcttttgatgttgtatctcttagactcttcaattgaagtattgtatttttccttaaaaaaaaaaaaaaaaaaaactcgaggggggggcccggtcccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24853" stop="23026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24547" g_stop="24408" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="153" r_length="139" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23326" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="556" r_length="403" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="557" polyA_stop="577"/>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E415222" ref_strand="-">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E415222" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="24547" e_stop="24408"/>
          <exon e_start="23744" e_stop="23326"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATTTTTCCTT</genome_strand>
        <mrna_strand>ACAAAGAAGTT-GAAGTTGTGATCATTCTCTCTCAGTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCTGTGGCACGTGCCGCCCTCGTGCAAAGGGGATCTGTATCCCGCACCTCAACTATTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCCATGAGCAAGGGTGGAAAAGTGAAATGCTCAATGGAAGGAAAGCCAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGTATGTCAAACCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTTGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTCTACACTTCTGGAATTGATGATGATGAAGAATCTGGACTCTCTCTTTAAACTTTGTGTATTA------TTATGTGATACTATAATC-AACTTTAA-G--------TACTTCTTTTGATGTTGTATCTCTTAGACTCTTCAATTGAAGTATTGTATTTTTCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E293337" ref_strand="+" ref_description="SGN-E293337 [cLET-18-G15]">
      <seq>aaaaaaaagttagaagttgtgatcattctctctcactaatacagaaatggcaaccatcactgcttgcaccacaacttcttcggtggcgcgtgccgccctcgtgcaaaggggatctgtatctcgcacctcagttgttcttggattaccatcaatgagcaagggtggaaaagtgaaatgttcaatggaaggaaagggaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagcatgtcaagcccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatccttttaggtgtatttggtttgatttggtctctctacactgtttacacttctggacttgatgaagatgaagaatctggaatgtctctttaatttttgtctattattttttttttgtcatactataatcaaactttaatgaatttaactacttcttttgatgttgtatctcttacactcttcaattgaagtattgtatttttccttannnaaaaaaaaaaaaaaaaaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24847" stop="23026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24547" g_stop="24408" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23326" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="559" r_length="419" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="564" polyA_stop="585"/>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E293337" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293337" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24547" e_stop="24408"/>
          <exon e_start="23744" e_stop="23326"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATTTTTCCTT</genome_strand>
        <mrna_strand>AAAAAAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATTTTTCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E735268" ref_strand="+" ref_description="SGN-E735268 [LB14DE08]">
      <seq>aaaaagttagaacttgtgatcattctctctcactaatacagaaatggcaaccatcactgcttgcaccacaacttcttcggtggcgcgtgccgccctcgtgcaaaggggatctgtatctcgcacctcagttgttcttggattaccatcaatgagcaagggtggaaaagtgaaatgttcaatggaaggaaagggaaaaagtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagcatgtcaagcccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatccttttaggtgtatttggtttgatttggtctctctacactgtttacacttctggacttgatgaagatgaagaatctggaatgtctctttaatttttgtctattattttttttttgtcatactataatcaaactttaatgaatttaactacttcttttgatgttgtatctcttacactcttcaattgaagtattgtatttttccttaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24844" stop="23026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24544" g_stop="24408" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23326" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="556" r_length="419" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="557" polyA_stop="576"/>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E735268" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735268" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24544" e_stop="24408"/>
          <exon e_start="23744" e_stop="23326"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATTTTTCCTT</genome_strand>
        <mrna_strand>AAAAAGTTAGAACTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAAAGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATTTTTCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E290738" ref_strand="+" ref_description="SGN-E290738 [cLET-10-D19]">
      <seq>aaaagttagaagttgtgatcattctctctcactaatacagaaatggcaaccatcactgcttgcaccacaacttcttcggtggcgcgtgccgccctcgtgcaaaggggatctgtatctcgcacctcagttgttcttggattaccatcaatgagcaagggtggaaaagtgaaatgttcaatggaaggaaagggaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagcatgtcaagcccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatccttttaggtgtatttggtttgatttggtctctctacactgtttacacttctggacttgatgaagatgaagaatctggaatgtctctttaatttttgtctattattttttttttgtcatactataatcaaactttaatgaatttaactacttcttttgatgttgtatctcttacactcttcaattgaagtattgtatttttcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24843" stop="23026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24543" g_stop="24408" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23326" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="555" r_length="419" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E290738" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290738" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24543" e_stop="24408"/>
          <exon e_start="23744" e_stop="23326"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATTTTTCCTT</genome_strand>
        <mrna_strand>AAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATTTTTCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E297289" ref_strand="+" ref_description="SGN-E297289 [cLET-29-K24]">
      <seq>aaggaaagggaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagcatgtcaagcccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatccttttaggtgtatttggtttgatttggtctctctacactgtttacacttctggacttgatgaagatgaagaatctggaatgtctctttaatttttgtctattatttttttttgtcatactataatcaaactttaatgaatttaactacttcttttgatgttgtatctcttacactcttcaattgaagtattgtatttttcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="23999" stop="23026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23699" g_stop="23326" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="373" r_length="373" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E297289" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>374</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297289" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23699" e_stop="23326"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATTTTTCCTT</genome_strand>
        <mrna_strand>AAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTA-TTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATTTTTCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E402385" ref_strand="+" ref_description="SGN-E402385 [PPC-7-H1]">
      <seq>gatatcaacaaagaagttgaagttgtgatcattctctctcagtaatacagaaatggcaaccatcactgcttgcaccacaacttcttctgtggcacgtgccgccctcgtgcaaaggggatctgtatcccgcacctcaactattcttggattaccatccatgagcaagggtggaaaagtgaaatgctcaatggaaggaaagccaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagtatgtcaaacccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatcctttttggtgtatttggtttgatttggtctctctacactgtctacacttctggaattgatgatgatgaagaatctggactctctctttaaactttgtgtattattatgtgatactataatcaactttaagtacttcttttgatgctgtatctcttagactcttcaattgaagtattgtatttttcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24853" stop="23027"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24556" g_stop="24408" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="0.913"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23327" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="548" r_length="402" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E402385" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.035" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E402385" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24556" e_stop="24408"/>
          <exon e_start="23744" e_stop="23327"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTATCAACAAAAAAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATTTTTCCT</genome_strand>
        <mrna_strand>GATATCAACA--AAGAAGTT-GAAGTTGTGATCATTCTCTCTCAGTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCTGTGGCACGTGCCGCCCTCGTGCAAAGGGGATCTGTATCCCGCACCTCAACTATTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCCATGAGCAAGGGTGGAAAAGTGAAATGCTCAATGGAAGGAAAGCCAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGTATGTCAAACCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTTGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTCTACACTTCTGGAATTGATGATGATGAAGAATCTGGACTCTCTCTTTAAACTTTGTGTATTA------TTATGTGATACTATAATC-AACTTTAA-G--------TACTTCTTTTGATGCTGTATCTCTTAGACTCTTCAATTGAAGTATTGTATTTTTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E413910" ref_strand="+" ref_description="SGN-E413910 [STM-18-L1]">
      <seq>cattctctctcagtaatacagaaatggcaaccatcacttgcttgcaccacaacttcttctgtggcacgtgccgccctcgtgcaaaggggatctgtatcccgcacctcaactattcttggattaccatccatgagcaagggtggaaaagtgaaatgctcaatggaaggaaagccaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagtatgtcaaacccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatcctttttggtgtatttggtttgatttggtctctctacactgtctacacttctggaattgatgatgatgaagaatctggactctctctttaactntgtgtattattatgtgatactataatcaactttaagtacttcttttgatgttgtatctcttagactcttcaattgaagtattgtatttttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24824" stop="23028"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24524" g_stop="24408" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23328" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="518" r_length="400" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E413910" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.031" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E413910" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24524" e_stop="24408"/>
          <exon e_start="23744" e_stop="23328"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTCTCTCTCACTAATACAGAAATGGCAACCATCAC-TGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATTTTTCC</genome_strand>
        <mrna_strand>CATTCTCTCTCAGTAATACAGAAATGGCAACCATCACTTGCTTGCACCACAACTTCTTCTGTGGCACGTGCCGCCCTCGTGCAAAGGGGATCTGTATCCCGCACCTCAACTATTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCCATGAGCAAGGGTGGAAAAGTGAAATGCTCAATGGAAGGAAAGCCAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGTATGTCAAACCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTTGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTCTACACTTCTGGAATTGATGATGATGAAGAATCTGGACTCTCTCTTTAA-CTNTGTGTATTA------TTATGTGATACTATAATC-AACTTTAA-G--------TACTTCTTTTGATGTTGTATCTCTTAGACTCTTCAATTGAAGTATTGTATTTTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E290856" ref_strand="+" ref_description="SGN-E290856 [cLET-10-B21]">
      <seq>aaaagttagaagttgtgatcattctctctcactaatacagaaatggcaaccatcactgcttgcaccacaacttcttcggtggcgcgtgccgccctcgtgcaaaggggatctgtatctcgcacctcagttgttcttggattaccatcaatgagcaagggtggaaaagtgaaatgttcaatggaaggaaagggaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagcatgtcaagcccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatccttttaggtgtatttggtttgatttggtctctctacactgtttacacttctggacttgatgaagatgaagaatctggaatgtctctttaatttttgtctattattttttttttgtcatactataatcaaactttaatgaatttaactacttcttttgatgttgtatctcttacactcttcaattgaagtattgtatttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24843" stop="23029"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24543" g_stop="24408" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23329" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="552" r_length="416" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E290856" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290856" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24543" e_stop="24408"/>
          <exon e_start="23744" e_stop="23329"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATTTTTC</genome_strand>
        <mrna_strand>AAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E202715" ref_strand="+" ref_description="SGN-E202715 [cLEB-1-C1]">
      <seq>gcacgaggtggcgcgtgccgccctcgtgcaaaggggatctgtatctcgcacctcagttgttcttggattaccatcaatgagcaagggtggaaaagtgaaatgttcaatggaaggaaagggaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagcatgtcaagcccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatccttttaggtgtatttggtttgatttggtctctctacactgtttacacttctggacttgatgaagatgaagaatctggaatgtctctttaatttttgtctattattttttttttgtcatactataatcaaactttaatgaatttaactacttcttttgatgttgtatctcttacactcttcaattgaagtattgaatttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24766" stop="23029"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24472" g_stop="24408" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="0.908"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23329" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="481" r_length="416" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E202715" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202715" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24472" e_stop="24408"/>
          <exon e_start="23744" e_stop="23329"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATTTTTC</genome_strand>
        <mrna_strand>GCACGAGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGAATTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E292001" ref_strand="+" ref_description="SGN-E292001 [cLET-7-F5]">
      <seq>aaaaagttagaagttgagatcattctctctcactaatacataaatggcaaccatcactgcttgcaccacaacttcttcggtggcgcgtgccgccctcgtgcaaaggggatctgtatctcgcacctcagttgttcttggattaccatcaatgagcaagggtggaaaagtgaaatgttcaatggaaggaaagggaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcaacaagcatgtcaagcccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatccttttaggtgtatttggtttgatttggtctctctacactgtttacacttctggacttgatgaagatgaagaatctggaatgtctctttaatttttgtctattattgtttttttgtcatactataatcaaactttaatgaatttaactacttcttttgatgttgtatctcttacactcttcaattgaagtattgtatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24844" stop="23033"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24544" g_stop="24408" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23333" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="549" r_length="412" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E292001" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292001" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24544" e_stop="24408"/>
          <exon e_start="23744" e_stop="23333"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATT</genome_strand>
        <mrna_strand>AAAAAGTTAGAAGTTGAGATCATTCTCTCTCACTAATACATAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAACAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTGTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E285074" ref_strand="+" ref_description="SGN-E285074 [cLER-19-J22]">
      <seq>aaactgagttgataatagccctatcaacaaaaaaaagttagaagttgtgatcattctctctcactaatacagaaatggcaaccatcactgcttgcaccacaacttcttcggtggcgcgtgccgccctcgtgcaaaggggatctgtatctcgcacctcagttgttcttggattaccatcaatgagcaagggtggaaaagtgaaatgttcaatggaaggaaagggaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagcatgtcaagcccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatccttttaggtgtatttggtttgatttggtctctctacactgtttacacttctggacttgatgaagatgaagaatctggaatgtctctttaatttttgtctattattgttattttgtcatactataatcaaactttaatgaatttaactacttcttttgatgttgaatctcttacactcttcaattgaagtatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24875" stop="23038"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24575" g_stop="24408" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23338" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="575" r_length="407" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E285074" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285074" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24575" e_stop="24408"/>
          <exon e_start="23744" e_stop="23338"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTGAGTTGATAATAGCCCTATCAACAAAAAAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATT</genome_strand>
        <mrna_strand>AAACTGAGTTGATAATAGCCCTATCAACAAAAAAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTGTTATTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGAATCTCTTACACTCTTCAATTGAAGTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E612366" ref_strand="+" ref_description="SGN-E612366 [62128]">
      <seq>atttgatatcaacaaagaagttgaagttgtgatcattctctctcagtaatacagaaatggcaaccatcactgcttgcaccacaacttcttctgtggcacgtgccgccctcgtgcaaaggggatctgtatcccgcacctcaactattcttggattaccatccatgagcaagggtggaaaagtgaaatgctcaatggaaggaaagccaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagtatgtcaaacccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggnctaccatttggactcagcaacaatcttcttggttggatcctttttggtgtatttggtttgatttggtctctctacactgtctacacttctggaattgatgatgatgaagaatctggactctctctttaaactttgtgtattattatgtgatactataatcaactttaagtacttcttttgatgttgtatctcttagactcttcaattgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24853" stop="23042"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24561" g_stop="24408" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="0.896"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23342" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="538" r_length="388" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E612366" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.035" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E612366" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24561" e_stop="24408"/>
          <exon e_start="23744" e_stop="23342"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGCCCTATCAACAAAAAAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGG-CTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAG</genome_strand>
        <mrna_strand>ATT-TGATATCAACAAAGA--AGTT-GAAGTTGTGATCATTCTCTCTCAGTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCTGTGGCACGTGCCGCCCTCGTGCAAAGGGGATCTGTATCCCGCACCTCAACTATTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCCATGAGCAAGGGTGGAAAAGTGAAATGCTCAATGGAAGGAAAGCCAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGTATGTCAAACCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGNCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTTGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTCTACACTTCTGGAATTGATGATGATGAAGAATCTGGACTCTCTCTTTAAACTTTGTGTATTA------TTATGTGATACTATAATC-AACTTTAA-G--------TACTTCTTTTGATGTTGTATCTCTTAGACTCTTCAATTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E572068" ref_strand="-" ref_description="SGN-E572068 [31163]">
      <seq>ttgaaatcaacaaagaagttgaagttgtgatcattctctctcagtaatacagaaatggcaaccatcactgcttgcaccacaacttcttctgtggcacgtgccgccctcgtgcaaaggggatctgtatcccgcacctcaactattcttggattaccatccatgagcaagggtggaaaagtgaaatgctcaatggaaggaaagccaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagtatgtcaaacccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatcctttttggtgtatttggtttgatttggtctctctacactgtctacacttctggaattgatgatgatgaagaatctggactctctctttaaactttgtgtattattatgtgatactataatcaactttaactacttctcttgatgttgtatctcttagactcttcaattgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24850" stop="23042"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24555" g_stop="24408" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="0.885"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23342" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="535" r_length="387" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E572068" ref_strand="-">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.030" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E572068" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="24555" e_stop="24408"/>
          <exon e_start="23744" e_stop="23342"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATCAACAAAAAAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAG</genome_strand>
        <mrna_strand>TTGAAATCAACAAAGAAGTTGAAGTTGTGATCATTCTCTCTCAGTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCTGTGGCACGTGCCGCCCTCGTGCAAAGGGGATCTGTATCCCGCACCTCAACTATTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCCATGAGCAAGGGTGGAAAAGTGAAATGCTCAATGGAAGGAAAGCCAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGTATGTCAAACCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTTGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTCTACACTTCTGGAATTGATGATGATGAAGAATCTGGACTCTCTCTTTAAACTTTGTGTATTA------TTATGTGATACTATAATC-AAC---------TTTAACTACTTCTCTTGATGTTGTATCTCTTAGACTCTTCAATTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E347368" ref_strand="+" ref_description="SGN-E347368 [cTOF-33-B14]">
      <seq>acaaaaaaaagttagaagttgtgatcattctctctcactaatacagaaatggcaaccatcactgcttgcaccacaacttcttcggtggcgcgtgccgccctcgtgcaaaggggatctgtatctcgcacctcagttgttcttggattaccatcaatgagcaagggtggaaaagtgaaatgttcaatggaaggaaagggaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagcatgtcaagcccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatccttttaggtgtatttggtttgatttggtctctctacactgtttacacttctggacttgatgaagatgaagaatctggaatgtctctttaatttttgtctattatttttttttttgtcatactataatcaaactttaatgaatttaactacttcttttgatgttgtatctcttacactcttcaattgaagtattgtattaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24849" stop="23033"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24549" g_stop="24408" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23343" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="545" r_length="403" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="556" polyA_stop="567"/>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E347368" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347368" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24549" e_stop="24408"/>
          <exon e_start="23744" e_stop="23343"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAAAAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTA-TTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAA</genome_strand>
        <mrna_strand>ACAAAAAAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E612654" ref_strand="+" ref_description="SGN-E612654 [62419]">
      <seq>atttgaaatcaacaaagaagttgaagttgtgatcattctctctcagtaatacagaaatggcaaccatcactgcttgcaccacaacttcttctgtggcacgtgccgccctcgtgcaaaggggatctgtatcccgcacctcaactattcttggattaccatccatgagcaagggtggaaaagtgaaatgctcaatggaaggaaagccaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagtatgtcaaacccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatcctttttggtgtatttggtttgatttggtctctctacactgtctacacttctggaattgatgatgatgaagaatctggactctctctttaaactttgtgtattattatgtgatactataatcaactttaactacttctcttgatgtcgtatctcttagactcttcaattgaagtattgtatttgtcaaaacaaaaaaaacaaaagagaaagaaaaaaaaaagaacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24850" stop="23029"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24547" g_stop="24408" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="150" r_length="139" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23343" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="536" r_length="386" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="551" polyA_stop="563"/>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E612654" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="0.919" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E612654" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24547" e_stop="24408"/>
          <exon e_start="23744" e_stop="23343"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAA</genome_strand>
        <mrna_strand>ACAAAGAAGTT-GAAGTTGTGATCATTCTCTCTCAGTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCTGTGGCACGTGCCGCCCTCGTGCAAAGGGGATCTGTATCCCGCACCTCAACTATTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCCATGAGCAAGGGTGGAAAAGTGAAATGCTCAATGGAAGGAAAGCCAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGTATGTCAAACCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTTGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTCTACACTTCTGGAATTGATGATGATGAAGAATCTGGACTCTCTCTTTAAACTTTGTGTATTA------TTATGTGATACTATAATC-AAC---------TTTAACTACTTCTCTTGATGTCGTATCTCTTAGACTCTTCAATTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E696691" ref_strand="+" ref_description="SGN-E696691 [LH_Ea09M17](-)">
      <seq>aaaaaaattacaagttgtgatcattctctctcactaatacagaaatggcaaccatcactgcttgcaccacaacttcttcagtggcgcgtgccgccctcgtgcaaaggggatctgtatctcgcacctcggttgttcttggattaccatcaatgagcaagggtggaaaagtgaaatgttcaatggaaggaaaaggaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagcatgtcaaacccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatcctttttggtgtatttggtttgatttggtctctctacactgtttacacttctggacttgatgaagatgaagaatctggaatgtctctttaatttttgtcatactataatcaaactttaattaatttaactacttctttagaggttgtatctcttacactcttcaattgaagtactgattttcctaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24846" stop="23027"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24545" g_stop="24408" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23343" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="522" r_length="384" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E696691" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E696691" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24545" e_stop="24408"/>
          <exon e_start="23744" e_stop="23343"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAA</genome_strand>
        <mrna_strand>AAAAAAATTACAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCAGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCGGTTGTTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAAGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAACCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTTGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTC---------T-T-TA--A-----TTTTTGTCATACTATAATCAAACTTTAATTAATTTAACTACTTCTTTAGAGGTTGTATCTCTTACACTCTTCAATTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E347443" ref_strand="+" ref_description="SGN-E347443 [cTOF-33-B15]">
      <seq>tcactaatacaaaaatggcaaccatcactgctagcaccacaacttcttcggtggcgcgtgccgccctcgtgcaaaggggatctgtatctcgcacctcagttgttcttggattaccatcaatgagcaagggtggaaaagtgaaatgttcaatggaaggaaagggaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagcatgtcaagcccagtaacaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatccttttacgtgtatttggtttgatttggtctctctacactgtttacacttctggacttgatgaacatgaagaatctggaatgtctcttcaatttttgtctattatttaattttttgacatactataatcaaactctaatgaatttaactacttcttttgatgttgtatctcttacactcttcaattgaagtatcgcattaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24815" stop="23033"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24515" g_stop="24408" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23343" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="511" r_length="403" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="522" polyA_stop="533"/>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E347443" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347443" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24515" e_stop="24408"/>
          <exon e_start="23744" e_stop="23343"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTT-TTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAA</genome_strand>
        <mrna_strand>TCACTAATACAAAAATGGCAACCATCACTGCTAGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAACAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTACGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAACATGAAGAATCTGGAATGTCTCTTCAATTTTTGTCTATTATTTAATTTTTTGACATACTATAATCAAACTCTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E612031" ref_strand="+" ref_description="SGN-E612031 [61789]">
      <seq>gaagttgaagttgtgatcattctctctcagtaatacagaaatggcaaccatcactgcttgcaccacaacttcttctgtggcacgtgccgccctcgtgcaaaggggatctgtatcccgcacctcaactattcttggattaccatccatgagcaagggtggaaaagtgaaatgctcaatggaaggaaagccaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagtatgtcaaacccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatcctttttggtgtatttggtttgatttggtctctctacactgtctacacttctggaattgatgatgatgaagaatctggactctctctttaaactttgtgtattattatgtgatactataatcaactttaagtacttcttttgatgttgtatctcttagactcttcaattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24841" stop="23044"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24542" g_stop="24408" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23344" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="519" r_length="385" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E612031" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.033" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E612031" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24542" e_stop="24408"/>
          <exon e_start="23744" e_stop="23344"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGA</genome_strand>
        <mrna_strand>GAAGTT-GAAGTTGTGATCATTCTCTCTCAGTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCTGTGGCACGTGCCGCCCTCGTGCAAAGGGGATCTGTATCCCGCACCTCAACTATTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCCATGAGCAAGGGTGGAAAAGTGAAATGCTCAATGGAAGGAAAGCCAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGTATGTCAAACCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTTGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTCTACACTTCTGGAATTGATGATGATGAAGAATCTGGACTCTCTCTTTAAACTTTGTGTATTA------TTATGTGATACTATAATC-AACTTTAA-G--------TACTTCTTTTGATGTTGTATCTCTTAGACTCTTCAATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E611584" ref_strand="+" ref_description="SGN-E611584 [61337]">
      <seq>gttgataatagccccatatcttatttgaaatcaacaaagaagttggagttgtgatcattctctctcagtaatacagaaatggcaaccatcactgcttgcaccacaacttcttctgtggcacgtgccgccctcgtgcaaaggggatctgtatcccgcacctcaactattcttggattaccatccatgagcaagggtggaaaagtgaaatgctcaatggaaggaaagccaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagtatgtcaaacccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatcctttttggtgtatttggtttgatttggtctctctacactgtctacacttctggaattgatgatgatgaagaatctggactctctctttaaactttgtgtattattatgtgatactataatcaactttaactacttctcttgatgttgtatctcttagactcttcaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24850" stop="23045"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24547" g_stop="24408" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="172" r_length="139" r_score="0.921"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23345" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="556" r_length="384" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E611584" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E611584" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24547" e_stop="24408"/>
          <exon e_start="23744" e_stop="23345"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTG</genome_strand>
        <mrna_strand>ACAAAGAAGTT-GGAGTTGTGATCATTCTCTCTCAGTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCTGTGGCACGTGCCGCCCTCGTGCAAAGGGGATCTGTATCCCGCACCTCAACTATTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCCATGAGCAAGGGTGGAAAAGTGAAATGCTCAATGGAAGGAAAGCCAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGTATGTCAAACCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTTGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTCTACACTTCTGGAATTGATGATGATGAAGAATCTGGACTCTCTCTTTAAACTTTGTGTATTA------TTATGTGATACTATAATC-AAC---------TTTAACTACTTCTCTTGATGTTGTATCTCTTAGACTCTTCAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E296656" ref_strand="+" ref_description="SGN-E296656 [cLET-39-I3]">
      <seq>aaagttagaagttgtgatcattctctctcactaatacagaaatggcaaccatcactgcttgcaccacaacttcttcggtggcgcgtgccgccctcgtgcaaaggggatctgtatctcgcacctcagttgttcttggattaccatcaatgagcaagggtggaaaagtgaaatgttcaatggaaggaaagggaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagcatgtcaagcccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatccttttacgtgtatgaggtttgatttggtctctctacactgtttacacttctggacttgatgaacatgaagaatctggaatgtctctttaattgttgtctattatttgttctttgtcatactataatcaaactttaatgaatgtaactacttcttttgatgttgtatctcttacactcttcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24842" stop="23047"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24542" g_stop="24408" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23347" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="533" r_length="398" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E296656" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296656" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24542" e_stop="24408"/>
          <exon e_start="23744" e_stop="23347"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAAT</genome_strand>
        <mrna_strand>AAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTACGTGTATGAGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAACATGAAGAATCTGGAATGTCTCTTTAATTGTTGTCTATTATTTGTTCTTTGTCATACTATAATCAAACTTTAATGAATGTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E724660" ref_strand="+" ref_description="SGN-E724660 [FC24DB10]">
      <seq>ggcaccacaacttcttcgggggcgcgtgccgccctcgtgcaaaggggatctgtatctcgcacctcatttgttcttggattaccatcaatgagcaagggtggaaaagtgaaatgttcaatggaaggaaagggaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagcatgtcaagcccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatccttttaggtgtatttggtttgatttggtctctctacactgtttacacttctggacttgatgaaaatgaagaatctggaatgtctctttaatttttgtctattattttttttttgccatactataatcaaactttaatgaatttaactacttcttttgaggttgaatctcttacactcttcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24782" stop="23048"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24483" g_stop="24408" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23348" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="473" r_length="397" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E724660" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E724660" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24483" e_stop="24408"/>
          <exon e_start="23744" e_stop="23348"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAA</genome_strand>
        <mrna_strand>GGCACCACAACTTCTTCGGGGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCATTTGTTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAAATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGCCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGAGGTTGAATCTCTTACACTCTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E261201" ref_strand="+" ref_description="SGN-E261201 [cLEG-65-O16]">
      <seq>aagttagaagttgtgatcattctctctcactaatacagaaatggcaaccatcactgcttgcaccacaacttcttcggtggcgcgtgccgccctcgtgcaaaggggatctgtatctcgcacctcagttgttcttggattaccatcaatgagcaagggtggaaaagtgaaatgttcaatggaaggaaagggaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagcatgtcaagcccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatccttttaagtgtatttggtttgatttggtctctctacactgtttacacttctggacttgatgaagatgaagaatctggaatgtctctttaatttttggctattatttatttttttgccatactataatcaaactttaatgaatttaactacttcttttgatgttgcatctcttacactcttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24841" stop="23049"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24541" g_stop="24408" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23349" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="531" r_length="397" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E261201" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261201" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24541" e_stop="24408"/>
          <exon e_start="23744" e_stop="23349"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTT-TTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCA</genome_strand>
        <mrna_strand>AAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAAGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGGCTATTATTTATTTTTTTGCCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGCATCTCTTACACTCTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E282871" ref_strand="+" ref_description="SGN-E282871 [cLER-15-L5]">
      <seq>aagttagaagttgtgatcattctctctcactaatacagaaatggcaaccatcactgcttgcaccacaacttcttcggtggcgcgtgccgccctcgtgcaaaggggatctgtatctcgcacctcagttgttcttggattaccatcaatgagcaagggtggaaaagtgaaatgttcaatggaaggaaagggaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagcatgtcaagcccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatccttttaggtgtatttggtttgatttggtctctctacactgtttacacttctggacttgatgaagatgaagaatctggaatgtctctttaatttttgtctattattttttttttgtcatactataatcaaactttaatgaatttaactacttcttttgatgtgtatctcttacactcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24841" stop="23050"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24541" g_stop="24408" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23350" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="528" r_length="394" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E282871" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282871" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24541" e_stop="24408"/>
          <exon e_start="23744" e_stop="23350"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTC</genome_strand>
        <mrna_strand>AAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATG-TGTATCTCTTACACTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E284240" ref_strand="+" ref_description="SGN-E284240 [cLER-16-M8]">
      <seq>tctctctcactaatacagaaatggcaaccatcactgcttgcaccacaacttcttcggtggcgcgtgccgccctcgtgcaaaggggatctgtatctcgcacctcagttgttcttggattaccatcaatgagcaagggtggaaaagtgaaatgttcaatggaaggaaagggaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagcatgtcaagcccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatccttttaggtgtatttggtttgatttggtctctctacactgtttacacttctggacttgatgaagatgaagaatctggaatgtctctttaatttttgtctattatttttttttttgtcatactataatcaaactttaatgaatttaactacttcttttgatgttggatctcttacactcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24821" stop="23050"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24521" g_stop="24408" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23350" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="510" r_length="396" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E284240" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284240" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24521" e_stop="24408"/>
          <exon e_start="23744" e_stop="23350"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTA-TTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTC</genome_strand>
        <mrna_strand>TCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGGATCTCTTACACTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E322912" ref_strand="+" ref_description="SGN-E322912 [cTOB-30-M15]">
      <seq>acaaaaaaaagttagaagttgtgatcattctctctcactaatacagaaatggcaaccatcactgcttgcaccacaacttcttcggtggcgcgtgccgccctcgtgcaaaggggatctgtatctcgcacctcagttgttcttggattaccatcaatgagcaagggtggaaaagtgaaatgttcaatggaaggaaagggaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagcatgtcaagcccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatccttttaggtgtatttggtttgatttggtctctctacactgtttacacttctggacttgatgaagatgaagaatctggaatgtctctttaatttttgtctattattttttttttgtcatactataatcaaactttaatgaatttaactacttcttttgatgttgtaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24849" stop="23065"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24549" g_stop="24408" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23354" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="533" r_length="391" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E322912" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322912" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24549" e_stop="24408"/>
          <exon e_start="23744" e_stop="23354"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAAAAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACT</genome_strand>
        <mrna_strand>ACAAAAAAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E322821" ref_strand="+" ref_description="SGN-E322821 [cTOB-30-M14]">
      <seq>acaaaaaaaagttagaagttgtgatcattctctctcactaatacagaaatggcaaccatcactgcttgcaccacaacttcttcggtggcgcgtgccgccctcgtgcaaaggggatctgtatctcgcacctcagttgttcttggattaccatcaatgagcaagggtggaaaagtgaaatgttcaatggaaggaaagggaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagcatgtcaagcccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatccttttaggtgtatttggtttgatttggtctctctacactgtttacacttctggacttgatgaagatgaagaatctggaatgtctctttaatttttgtctattattttttttttgtcatactataatcaaactttaatgaatttaactacttcttttgatgttgtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24849" stop="23065"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24549" g_stop="24408" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23355" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="532" r_length="390" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E322821" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322821" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24549" e_stop="24408"/>
          <exon e_start="23744" e_stop="23355"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAAAAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACAC</genome_strand>
        <mrna_strand>ACAAAAAAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E735055" ref_strand="+" ref_description="SGN-E735055 [LB14BC05]">
      <seq>gttgtgatcattctctctcactaatacagaaatggcaaccatcactgcttgcaccacaacttcttcggtggcgcgtgccgccctcgtgcaaaggggatctgtatctcgcacctcagttgttcttggattaccatcaatgagcaagggtggaaaagtgaaatgttcaatggaaggaaagggaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagcatgtcaagcccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatccttttaggtgtatttggtttgatttggtctctctacactgtttacacttctggacttgatgaagatgaagaatctggaatgtctctttaatttttgtctattattttttttttgtcatactataatcaaactttaatgaatttaactacttcttttgatgttgtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24832" stop="23065"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24532" g_stop="24408" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23355" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="515" r_length="390" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E735055" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735055" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24532" e_stop="24408"/>
          <exon e_start="23744" e_stop="23355"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACAC</genome_strand>
        <mrna_strand>GTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E732157" ref_strand="+" ref_description="SGN-E732157 [LB01BG02]">
      <seq>atctttctctctcactaatacagaaatggcaaccatcactgcttgcaccacaacttcttcggtggcgcgtgccgccctcgtgcaaaggggatctgtatctcgcacctcagttgttcttggattaccatcaatgagcaagggtggaaaagtgaaatgttcaatggaaggaaagggaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagcatgtcaagcccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatccttttaggtgtatttggtttgatttggtctctctacactgtttacacttctggacttgatgaagatgaagaatctggaatgtctctttaatttttgtctattattttttttttgtcatactataatcaaactttaatgaatttaactacttcttttgatgttgtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24826" stop="23065"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24526" g_stop="24408" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23355" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="509" r_length="390" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E732157" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732157" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24526" e_stop="24408"/>
          <exon e_start="23744" e_stop="23355"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACAC</genome_strand>
        <mrna_strand>ATCTTTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E292770" ref_strand="+" ref_description="SGN-E292770 [cLET-11-L10]">
      <seq>gttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatccttttaggtgtatttggtttgatttggtctctctacactgtttacacttctggacttgatgaagatgaagaatctggaatgtctctttaatttttgtctattattttttttttgtcatactataatcaaactttaatgaatttaactacttcttttgatgttgtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="23901" stop="23065"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23601" g_stop="23355" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="247" r_length="247" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E292770" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>247</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292770" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23601" e_stop="23355"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACAC</genome_strand>
        <mrna_strand>GTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E290264" ref_strand="+" ref_description="SGN-E290264 [cLET-5-L9]">
      <seq>aaagttagaagttgtgatcattctctctcactaatacagaaatggcaaccatcactgcttgcaccacaacttcttcggtggcgcgtgccgccctcgtgcaaaggggatctgtatctcgcacctcagttgttcttggattaccatcaatgagcaagggtggaaaagtgaaatgttcaatggaaggaaagggaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagcatgtcaagcccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatccttttaggtgtatttggtttgatttggtctctctacactgtttacacttctggacttgatgaagatgaagaatctggaatgtctctttaatttttgtctattattttttttttgtcatactataatcaaactttaatgaatttaactacttcttttgatgttgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24842" stop="23065"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24542" g_stop="24408" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23356" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="524" r_length="389" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E290264" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290264" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24542" e_stop="24408"/>
          <exon e_start="23744" e_stop="23356"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACA</genome_strand>
        <mrna_strand>AAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E298499" ref_strand="+" ref_description="SGN-E298499 [cLET-41-G6]">
      <seq>aacttcttcggtggcgcgtgccgccctcgtgcaaaggggatctgtatctcgcacctcagttgttcttggattaccatcaatgagcaagggtggaaaagtgaaatgttcaatggaaggaaagggaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagcatgtcaagcccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggatggatccttttaggtgtattcggtttgatttggtctctctacactgtttacacttctggacttgatgaagatgaagaatctggaatgtctctctaattattgtctattatcttttttttgtcatactataatcaaactttaatgaatttaactacttcttttgatgttgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24775" stop="23065"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24475" g_stop="24408" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23356" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="457" r_length="389" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E298499" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298499" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24475" e_stop="24408"/>
          <exon e_start="23744" e_stop="23356"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACA</genome_strand>
        <mrna_strand>AACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGATGGATCCTTTTAGGTGTATTCGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTCTAATTATTGTCTATTATCTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E740871" ref_strand="+" ref_description="SGN-E740871 [LC23BA05]">
      <seq>cgactaaaaaaagttagaagttgtgatcattctctctcactaatacagaaatggcaaccatcactgcttgcaccacaacttcttcggtggcgcgtgccgccctcgtgcaaaggggatctgtatctcgcacctcagttgttcttggattaccatcaatgagcaagggtggaaaagtgaaatgttcaatggaaggaaagggaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagcatgtcaagcccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatccttttaggtgtatttggtttgatttggtctctctacactgtttacacttctggacttgatgaagatgaagaatctggaatgtctctttaatttttgtctattattttttttttgtcatactataatcaaactttaatgaatttaactacttcttttgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24851" stop="23072"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24551" g_stop="24408" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23362" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="527" r_length="383" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E740871" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740871" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24551" e_stop="24408"/>
          <exon e_start="23744" e_stop="23362"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAAAAAAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCT</genome_strand>
        <mrna_strand>CGACTAAAAAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E732499" ref_strand="+" ref_description="SGN-E732499 [LB02BD04]">
      <seq>caataaaaaaaagttagaagttgtgatcattctctctcactaatacagaaatggcaaccatcactgcttgcaccacaacttcttcggtggcgcgtgccgccctcgtgcaaaggggatctgtatctcgcacctcagttgttcttggattaccatcaatgagcaagggtggaaaagtgaaatgttcaatggaaggaaagggaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagcatgtcaagcccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatccttttaggtgtatttggtttgatttggtctctctacactgtttacacttctggacttgatgaagatgaagaatctggaatgtctctttaatttttgtctattattttttttttgtcatactataatcaaactttaatgaatttaactacttcttttgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24851" stop="23072"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24551" g_stop="24408" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23362" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="527" r_length="383" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E732499" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732499" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24551" e_stop="24408"/>
          <exon e_start="23744" e_stop="23362"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAAAAAAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCT</genome_strand>
        <mrna_strand>CAATAAAAAAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E738777" ref_strand="+" ref_description="SGN-E738777 [LC14DG07]">
      <seq>acaaaaaaaagttagaagttgtgatcattctctctcactaatacagaaatggcaaccatcactgcttgcaccacaacttcttcggtggcgcgtgccgccctcgtgcaaaggggatctgtatctcgcacctcagttgttcttggattaccatcaatgagcaagggtggaaaagtgaaatgttcaatggaaggaaagggaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagcatgtcaagcccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatccttttaggtgtatttggtttgatttggtctctctacactgtttacacttctggacttgatgaagatgaagaatctggaatgtctctttaatttttgtctattattttttttttgtcatactataatcaaactttaatgaatttaactacttcttttgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24849" stop="23072"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24549" g_stop="24408" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23362" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="525" r_length="383" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E738777" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E738777" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24549" e_stop="24408"/>
          <exon e_start="23744" e_stop="23362"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAAAAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCT</genome_strand>
        <mrna_strand>ACAAAAAAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E294974" ref_strand="+" ref_description="SGN-E294974 [cLET-17-D4]">
      <seq>aaagttagaagttgtgatcattctctctcactaatacagaaatggcaaccatcactgcttgcaccacaacttcttcggtggcgcgtgccgccctcgtgcaaaggggatctgtatctcgcacctcagttgttcttggattaccatcaatgagcaagggtggaaaagtgaaatgttcaatggaaggaaagggaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagcatgtcaagcccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatccttttaggtgtatttggtttgatttggtctctctacactgtttacacttctggacttgatgaagatgaagaatctggaaagtctctttaatttttgtctattattttttttttgccatactataaccaaactttaatgaatttaactacttcttttgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24842" stop="23072"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24542" g_stop="24408" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23362" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="518" r_length="383" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E294974" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294974" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24542" e_stop="24408"/>
          <exon e_start="23744" e_stop="23362"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCT</genome_strand>
        <mrna_strand>AAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAAAGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGCCATACTATAACCAAACTTTAATGAATTTAACTACTTCTTTTGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E289671" ref_strand="+" ref_description="SGN-E289671 [cLET-4-N14]">
      <seq>aaaaaaaagttagaagttgtgatcattctctctcactaatacagaaatggcaaccatcactgcttgcaccacaacttcttcggtggcgcgtgccgccctcgtgcaaaggggatctgtatctcgcacctcagttgttcttggattaccatcaatgagcaagggtggaaaagtgaaatgttcaatggaaggaaagggaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagcatgtcaagcccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatccttttaggtgtatttggtttgatttggtctctctacactgtttacacttctggacttgatgaagatgaagaatctggaatgtctctttaatttttgtctattattttttttttgtcatactataatcaaactttaatgaatttaactacttcttttgaaacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24847" stop="23072"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24547" g_stop="24408" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23366" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="519" r_length="379" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E289671" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289671" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24547" e_stop="24408"/>
          <exon e_start="23744" e_stop="23366"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGT</genome_strand>
        <mrna_strand>AAAAAAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGAAACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E732424" ref_strand="+" ref_description="SGN-E732424 [LB02AE09]">
      <seq>aaaaaaaagttagaagttgtgatcattctctctcactaatacagaaatggcaaccatcactgcttgcaccacaacttcttcggtggcgcgtgccgccctcgtgcaaaggggatctgtatctcgcacctcagttgttcttggattaccatcaatgagcaagggtggaaaagtgaaatgttcaatggaaggaaagggaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagcatgtcaagcccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatccttttaggtgtatttggtttgatttggtctctctacactgtttacacttctggacttgatgaagatgaagaatctggaatgtctctttaatttttgtctattattttttttttgtcatactataatcaaactttaatgaatttaactacttcttttgatgttgtaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24847" stop="23065"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24547" g_stop="24408" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23366" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="519" r_length="379" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="520" polyA_stop="535"/>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E732424" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732424" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24547" e_stop="24408"/>
          <exon e_start="23744" e_stop="23366"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGT</genome_strand>
        <mrna_strand>AAAAAAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E295740" ref_strand="+" ref_description="SGN-E295740 [cLET-25-G17]">
      <seq>aaaagttagaagttgtgatcattctctctcactaatacagaaatggcaaccatcactgcttgcaccacaacttcttcggtggcgcgtgccgccctcgtgcaaaggggatctgtatctcgcacctcagttgttcttggattaccatcaatgagcaagggtggaaaagtgaaatgttcaatggaaggaaagggaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagcatgtcaagcccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatccttttaagtgtatttggtttgatttggtctctctacactgtttacacttctggacttgatgaagatgaagaatctggaatgtctctttaatttttgtctattattttttttttgtcatactataatcaaactttaatgaatttaactacttcttttgatgttgtaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24843" stop="23065"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24543" g_stop="24408" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23366" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="515" r_length="379" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="516" polyA_stop="531"/>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E295740" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24543" e_stop="24408"/>
          <exon e_start="23744" e_stop="23366"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGT</genome_strand>
        <mrna_strand>AAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAAGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E283320" ref_strand="+" ref_description="SGN-E283320 [cLER-12-F20]">
      <seq>aagttagaagttgtgatcattctctctcactaatacagaaatggcaaccatcactgcttgcaccacaacttcttcggtggcgcgtgccgccctcgtgcaaaggggatctgtatctcgcacctcagttgttcttggattaccatcaatgagcaagggtggaaaagtgaaatgttcaatggaaggaaagggaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagcatgtcaagcccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatccttttaggtgtatttggtttgatttggtctctctacactgtttacacttctggacttgatgaagatgaagaatctggaatgtctctttaatttttgtctattattttttttttgtcatactataatcaaactttaatgaatttaactacttcttttgatgttgtaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24841" stop="23065"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24541" g_stop="24408" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23366" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="513" r_length="379" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="514" polyA_stop="527"/>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E283320" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283320" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24541" e_stop="24408"/>
          <exon e_start="23744" e_stop="23366"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGT</genome_strand>
        <mrna_strand>AAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E286735" ref_strand="+" ref_description="SGN-E286735 [cLES-14-L21]">
      <seq>tctctcactaatacagaaatggcaaccatcactgcttgcaccacaacttcttcggtggcgcgtgccgccctcgtgcaaaggggatctgtatctcgcacctcagttgttcttggattaccatcaatgagcaagggtggaaaagtgaaatgttcaatggaaggaaagggaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagcatgtcaagcccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatccttttaggtgtatttggtttgatttggtctctctacactgtttacacttctggacttgatgaagatgaagaatctggaatgtctctttaatttttgtctattattttttttttgtcatactataatcaaactttaatgaatttaactacttcttttgatgttgtaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24819" stop="23065"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24519" g_stop="24408" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23366" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="491" r_length="379" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="492" polyA_stop="506"/>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E286735" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286735" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24519" e_stop="24408"/>
          <exon e_start="23744" e_stop="23366"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGT</genome_strand>
        <mrna_strand>TCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E294106" ref_strand="+" ref_description="SGN-E294106 [cLET-13-M12]">
      <seq>aaaagttagaagttgtgatcattctctctcactaatacagaaatggcaaccatcactgcttgcaccacaacttcttcggtggcgcgtgccgccctcgtgcaaaggggatctgtatctcgcacctcagttgttcttggattaccatcaatgagcaagggtggaaaagtgaaatgttcaatggaaggaaagggaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagcatgtcaagcccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatccttttaggtgtatttggtttgatttggtctctctacactgtttacacttctggacttgatgaagatgaagaatctggaatgtctctttaatttttgtctattattttttttttgtcatactataatcaaactttaatgaatttaactacttcttttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24843" stop="23070"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24543" g_stop="24408" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23370" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="511" r_length="375" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E294106" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294106" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24543" e_stop="24408"/>
          <exon e_start="23744" e_stop="23370"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATG</genome_strand>
        <mrna_strand>AAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E291473" ref_strand="+" ref_description="SGN-E291473 [cLET-2-L1]">
      <seq>aacaaaaaaaagttagaagttgtgatcattctctctcactaatacagaaatggcaaccatcactgcttgcaccacaacttcttcggtggcgcgtgccgccctcgtgcaaaggggatctgtatctcgcacctcagttgttcttggattaccatcaatgagcaagggtggaaaagtgaaatgttcaatggaaggaaagggaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagcatgtcaagcccactagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatccttttacgtgtatttggtttgatttggtctctctacactgtttacacttctggacttgatgaagatgaagaatctggaatgcctctgtaatttttgtctatgattttttttttgccatactataatcaaactttaatgaatttaactacttcttttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24850" stop="23071"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24550" g_stop="24408" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23371" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="517" r_length="374" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E291473" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291473" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24550" e_stop="24408"/>
          <exon e_start="23744" e_stop="23371"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAAAAAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGAT</genome_strand>
        <mrna_strand>AACAAAAAAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCACTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTACGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGCCTCTGTAATTTTTGTCTATGATTTTTTTTTTGCCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E282506" ref_strand="+" ref_description="SGN-E282506 [cLER-18-K8]">
      <seq>agttagaagttgtgatcattctctctcactaatacagaaatggcaaccatcactgcttgcaccacaacttcttcggtggcgcgtgccgccctcgtgcaaaggggatctgtatctcgcacctcagttgttcttggattaccatcaatgagcaagggtggaaaagtgaaatgttcaatggaaggaaagggaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagcatgtcaagcccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatccttttaggtgtatttggtttgatttggtctctctacactgtttacacttctggacttgatgaagatgaagaatctggaatgtctctttaatttttgtctattatttttttttttgtcatactataatcaaactttaatgaatttaactacttcttttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24840" stop="23071"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24540" g_stop="24408" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23371" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="508" r_length="375" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E282506" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282506" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24540" e_stop="24408"/>
          <exon e_start="23744" e_stop="23371"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTA-TTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGAT</genome_strand>
        <mrna_strand>AGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E732879" ref_strand="+" ref_description="SGN-E732879 [LB03BE11]">
      <seq>cgctctatcaacaaaaaaaagttagaagttgtgatcattctctctcactaatacagaaatggcaaccatcactgcttgcaccacaacttcttcggtggcgcgtgccgccctcgtgcaaaggggatctgtatctcgcacctcagttgttcttggattaccatcaatgagcaagggtggaaaagtgaaatgttcaatggaaggaaagggaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagcatgtcaagcccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatccttttaggtgtatttggtttgatttggtctctctacactgtttacacttctggacttgatgaagatgaagaatctggaatgtctctttaatttttgtctattatttttttttttgtcatactataatcaaactttaatgaatttaactacttcttttgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24858" stop="23072"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24559" g_stop="24408" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23373" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="525" r_length="373" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="526" polyA_stop="537"/>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E732879" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732879" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24559" e_stop="24408"/>
          <exon e_start="23744" e_stop="23373"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCCTATCAACAAAAAAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTA-TTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTG</genome_strand>
        <mrna_strand>CGCTCTATCAACAAAAAAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E339021" ref_strand="+" ref_description="SGN-E339021 [cTOF-6-B5]">
      <seq>tcaacaaaaaaagttagaagttgtgatcattctctctcactaatacagaaatggcaaccatcactgcttgcaccacaacttcttcggtggcgcgtgccgccctcgtgcaaaggggatctgtatctcgcacctcagttgttcttggattaccatcaatgagcaagggtggaaaagtgaaatgttcaatggaaggaaagggaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagcatgtcaagcccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatccttttaggtgtatttggtttgatttggtctctctacactgtttacacttctggacttgatgaagatgaagaatctggaatgtctctttaatttttgtctattattttttttttgtcatactataatcaaactttaatgaatttaactacttcttttgaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24852" stop="23072"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24552" g_stop="24408" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23373" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="516" r_length="372" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="517" polyA_stop="530"/>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E339021" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339021" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24552" e_stop="24408"/>
          <exon e_start="23744" e_stop="23373"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACAAAAAAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTG</genome_strand>
        <mrna_strand>TCAAC-AAAAAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E735284" ref_strand="+" ref_description="SGN-E735284 [LB14DF12]">
      <seq>caaaaaaaagttagaagttgtgatcattctctctcactaatacagaaatggcaaccatcactgcttgcaccacaacttcttcggtggcgcgtgccgccctcgtgcaaaggggatctgtatctcgcacctcagttgttcttggattaccatcaatgagcaagggtggaaaagtgaaatgttcaatggaaggaaagggaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagcatgtcaagcccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatccttttaggtgtatttggtttgatttggtctctctacactgtttacacttctggacttgatgaagatgaagaatctggaatgtctctttaatttttgtctattattttttttttgtcatactataatcaaactttaatgaatttaactacttcttttgaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24848" stop="23072"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24548" g_stop="24408" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23373" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="513" r_length="372" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="514" polyA_stop="527"/>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E735284" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735284" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24548" e_stop="24408"/>
          <exon e_start="23744" e_stop="23373"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAAAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTG</genome_strand>
        <mrna_strand>CAAAAAAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E732139" ref_strand="+" ref_description="SGN-E732139 [LB01BE08]">
      <seq>aaaaagttagaagttgtgatcattctctctcactaatacagaaatggcaaccatcactgcttgcaccacaacttcttcggtggcgcgtgccgccctcgtgcaaaggggatctgtatctcgcacctcagttgttcttggattaccatcaatgagcaagggtggaaaagtgaaatgttcaatggaaggaaagggaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagcatgtcaagcccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatccttttaggtgtatttggtttgatttggtctctctacactgtttacacttctggacttgatgaagatgaagaatctggaatgtctctttaatttttgtctattatttttttttgtcatactataatcaaactttaatgaatttaactacttcttttgaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24844" stop="23072"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24544" g_stop="24408" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23373" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="508" r_length="371" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="509" polyA_stop="524"/>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E732139" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732139" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24544" e_stop="24408"/>
          <exon e_start="23744" e_stop="23373"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTG</genome_strand>
        <mrna_strand>AAAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTA-TTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E734908" ref_strand="+" ref_description="SGN-E734908 [LB13DF10]">
      <seq>aaaagttagaagttgtgatcattctctctcactaatacagaaatggcaaccatcactgcttgcaccacaacttcttcggtggcgcgtgccgccctcgtgcaaaggggatctgtatctcgcacctcagttgttcttggattaccatcaatgagcaagggtggaaaagtgaaatgttcaatggaaggaaagggaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagcatgtcaagcccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatccttttaggtgtatttggtttgatttggtctctctacactgtttacacttctggacttgatgaagatgaagaatctggaatgtctctttaatttttgtctattattttttttttgtcatactataatcaaactttaatgaatttaactaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24843" stop="23082"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24543" g_stop="24408" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23373" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="508" r_length="372" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E734908" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734908" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24543" e_stop="24408"/>
          <exon e_start="23744" e_stop="23373"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTG</genome_strand>
        <mrna_strand>AAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E734503" ref_strand="+" ref_description="SGN-E734503 [LB12DD04]">
      <seq>aaaagttagaagttgtgatcattctctctcactaatacagaaatggcaaccatcactgcttgcaccacaacttcttcggtggcgcgtgccgccctcgtgcaaaggggatctgtatctcgcacctcagttgttcttggattaccatcaatgagcaagggtggaaaagtgaaatgttcaatggaaggaaagggaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagcatgtcaagcccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatccttttaggtgtatttggtttgatttggtctctctacactgtttacacttctggacttgatgaagatgaagaatctggaatgtctctttaatttttgtctattatttttttttgtcatactataatcaaactttaatgaatttaactacttcttttgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24843" stop="23072"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24543" g_stop="24408" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23373" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="507" r_length="371" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="508" polyA_stop="519"/>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E734503" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734503" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24543" e_stop="24408"/>
          <exon e_start="23744" e_stop="23373"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTG</genome_strand>
        <mrna_strand>AAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTA-TTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E746327" ref_strand="+" ref_description="SGN-E746327 [GI|47104727]">
      <seq>aaaagttagaagttgtgatcattctctctcactaatacagaaatggcaaccatcactgcttgcaccacaacttcttcggtggcgcgtgccgccctcgtgcaaaggggatctgtatctcgcacctcagttgttcttggattaccatcaatgagcaagggtggaaaagtgaaatgttcaatggaaggaaagggaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagcatgtcaagcccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatccttttaggtgtatttggtttgatttggtctctctacactgtttacacttctggacttgatgaagatgaagaatctggaatgtctctttaatttttgtctattattttttttttgtcatactataatcaaactttaatgaatttaactacttcttttgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24843" stop="23072"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24543" g_stop="24408" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23373" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="508" r_length="372" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="509" polyA_stop="526"/>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E746327" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746327" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24543" e_stop="24408"/>
          <exon e_start="23744" e_stop="23373"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTG</genome_strand>
        <mrna_strand>AAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E737101" ref_strand="+" ref_description="SGN-E737101 [LC08CA02]">
      <seq>cgatcattctctctcactaatacagaaatggcaaccatcactgcttgcaccacaacttcttcggtggcgcgtgccgccctcgtgcaaaggggatctgtatctcgcacctcagttgttcttggattaccatcaatgagcaagggtggaaaagtgaaatgttcaatggaaggaaagggaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagcatgtcaagcccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatccttttaggtgtatttggtttgatttggtctctctacactgtttacacttctggacttgatgaagatgaagaatctggaatgtctctttaatttttgtctattattttttttttgtcatactataatcaaactttaatgaatttaactacttcttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24827" stop="23073"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24528" g_stop="24408" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23373" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="493" r_length="372" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E737101" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E737101" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24528" e_stop="24408"/>
          <exon e_start="23744" e_stop="23373"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTG</genome_strand>
        <mrna_strand>CGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E735631" ref_strand="+" ref_description="SGN-E735631 [LC02BE03]">
      <seq>tgatcattctctctcactaatacagaaatggcaaccatcactgcttgcaccacaacttcttcggtggcgcgtgccgccctcgtgcaaaggggatctgtatctcgcacctcagttgttcttggattaccatcaatgagcaagggtggaaaagtgaaatgttcaatggaaggaaagggaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagcatgtcaagcccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatccttttaggtgtatttggtttgatttggtctctctacactgtttacacttctggacttgatgaagatgaagaatctggaatgtctctttaatttttgtctattattttttttttgtcatactataatcaaactttaatgaatttaactacttcttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24828" stop="23073"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24528" g_stop="24408" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23373" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="493" r_length="372" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E735631" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735631" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24528" e_stop="24408"/>
          <exon e_start="23744" e_stop="23373"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTG</genome_strand>
        <mrna_strand>TGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E735846" ref_strand="+" ref_description="SGN-E735846 [LC03BE03]">
      <seq>tgatcattctctctcactaatacagaaatggcaaccatcactgcttgcaccacaacttcttcggtggcgcgtgccgccctcgtgcaaaggggatctgtatctcgcacctcagttgttcttggattaccatcaatgagcaagggtggaaaagtgaaatgttcaatggaaggaaagggaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagcatgtcaagcccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatccttttaggtgtatttggtttgatttggtctctctacactgtttacacttctggacttgatgaagatgaagaatctggaatgtctctttaatttttgtctattattttttttttgtcatactataatcaaactttaatgaatttaactacttcttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24828" stop="23073"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24528" g_stop="24408" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23373" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="493" r_length="372" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E735846" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735846" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24528" e_stop="24408"/>
          <exon e_start="23744" e_stop="23373"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTG</genome_strand>
        <mrna_strand>TGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E739637" ref_strand="+" ref_description="SGN-E739637 [LC18BA08]">
      <seq>tgatcattctctctcactaatacagaaatggcaaccatcactgcttgcaccacaacttcttcggtggcgcgtgccgccctcgtgcaaaggggatctgtatctcgcacctcagttgttcttggattaccatcaatgagcaagggtggaaaagtgaaatgttcaatggaaggaaagggaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagcatgtcaagcccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatccttttaggtgtatttggtttgatttggtctctctacactgtttacacttctggacttgatgaagatgaagaatctggaatgtctctttaatttttgtctattattttttttttgtcatactataatcaaactttaatgaatttaactacttcttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24828" stop="23073"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24528" g_stop="24408" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23373" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="493" r_length="372" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E739637" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739637" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24528" e_stop="24408"/>
          <exon e_start="23744" e_stop="23373"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTG</genome_strand>
        <mrna_strand>TGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E296751" ref_strand="+" ref_description="SGN-E296751 [cLET-26-A17]">
      <seq>aaaaagttagaagttgtgatcattctctctcactaatacagaaatggcaaccatcactgcttgcaccacaacttcttcggtggcgcgtgccgccctcgtgcaaaggggatctgtatctcgcacctcagttgttcttggattaccatcaatgagcaagggtggaaaagtgaaatgttcaatggaaggaaagggaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagcatgtcaagcccagtagcaatggctttggttgatgaaagaatgagcactgcaggaacagggctaccatttggactcagcaacaatcttcttggttggatcctttcaggtgtatttggtttgatttggtctctctacactgtttacacttctggacttgatgaagatgaagaatctggaatgtctctttaattcatgcctattatctttttattgtcatactataatcaaactttaatgaatttaactacttctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24844" stop="23074"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24544" g_stop="24408" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23374" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="508" r_length="371" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E296751" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296751" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24544" e_stop="24408"/>
          <exon e_start="23744" e_stop="23374"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTT</genome_strand>
        <mrna_strand>AAAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGCAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTCAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTCATGCCTATTATCTTTTTATTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E282593" ref_strand="+" ref_description="SGN-E282593 [cLER-15-C23]">
      <seq>aaaagttagaagttgtgatcattctctctcactaatacagaaatggcaaccatcactgcttgcaccacaacttcttcggtggcgcgtgccgccctcgtgcaaaggggatctgtatctcgcacctcagttgttcttggattaccatcaatgagcaagggtggaaaagtgaaatgttcaatggaaggaaagggaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagcatgtcaagcccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatccttttaggtgtatttggtttgatttggtctctctacactgtttacacttctggacttgatgaagatgaagaatctggaatgtctctttaatttttgtctattattttttttttgtcatactataatcaaactttaatgaatttaactacttctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24843" stop="23074"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24543" g_stop="24408" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23374" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="507" r_length="371" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E282593" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282593" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24543" e_stop="24408"/>
          <exon e_start="23744" e_stop="23374"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTT</genome_strand>
        <mrna_strand>AAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E282397" ref_strand="+" ref_description="SGN-E282397 [cLER-18-H11]">
      <seq>aagttagaagttgtgatcattctctctcactaatacagaaatggcaaccatcactgcttgcaccacaacttcttcggtggcgcgtgccgccctcgtgcaaaggggatctgtatctcgcacctcagttgttcttggattaccatcaatgagcaagggtggaaaagtgaaatgttcaatggaaggaaagggaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagcatgtcaagcccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatccttttaggtgtatttggtttgatttggtctctctacactgtttacacttctggacttgatgaagatgaagaatctggaatgtctctttaatttttgtctattattttttttttgtcatactataatcaaactttaatgaatttaactact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24841" stop="23080"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24541" g_stop="24408" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23380" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="499" r_length="365" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E282397" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282397" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24541" e_stop="24408"/>
          <exon e_start="23744" e_stop="23380"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACT</genome_strand>
        <mrna_strand>AAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E295008" ref_strand="+" ref_description="SGN-E295008 [cLET-17-N24]">
      <seq>aaaagttagaagttgcgatcattctctctcactaatacagaaatggcaaccatcactgcttgcaccacaacttcttcggtggcgcgtgccgccctcgtgcaaaggggatctgtatctcgcacctcagttgttcttggattaccatcaatgagcaagggtggaaaagtgaaatgttcaatggaaggaaagggaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagcatgtcaagcccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatccttttaggtgtatttggtttgatttggtctctctacactgtttacacttctggacttgatgaagatgaagaatctggaatgtctctttaattattggctattattctttttttgtcatactataatcaaactctaatgaatttaactac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24843" stop="23081"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24543" g_stop="24408" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23381" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="500" r_length="364" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E295008" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295008" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24543" e_stop="24408"/>
          <exon e_start="23744" e_stop="23381"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTAC</genome_strand>
        <mrna_strand>AAAAGTTAGAAGTTGCGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTATTGGCTATTATTCTTTTTTTGTCATACTATAATCAAACTCTAATGAATTTAACTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E296937" ref_strand="+" ref_description="SGN-E296937 [cLET-26-D17]">
      <seq>aaaaaaaagttagaagttgtgatgattctctctcactaatacagaaatggcaaccatgactgcttgcaccacaacttcttcggtggcgcgtgccgccctcgtgcaaaggggatctgtatctcgcacctcagttgttcttggattaccatcaatgagcaagggtggaaaagtgaaatgttcaatggaaggaaagggaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagcatgtcaagcccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatccttttaggtgtatttggtttgatttggtctctctacactgtttacacttctggacttgatgaagatgaagaatctggaatgtctctttaatttttgtctattattttttttttgtcatactataatcaaactttaatgaatttaacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24847" stop="23082"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24547" g_stop="24408" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23382" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="503" r_length="363" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E296937" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24547" e_stop="24408"/>
          <exon e_start="23744" e_stop="23382"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTA</genome_strand>
        <mrna_strand>AAAAAAAAGTTAGAAGTTGTGATGATTCTCTCTCACTAATACAGAAATGGCAACCATGACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E297873" ref_strand="+" ref_description="SGN-E297873 [cLET-38-P22]">
      <seq>aaaagttagaagttgtgatcattctctctcactaatacagaaatggcaaccatcactgcttgcaccacaacttcttcggtggcgcgtgccgccctcgtgcaaaggggatctgtatctcgcacctcagttgttcttggattaccatcaatgagcaagggtggaaaagtgaaatgttcaatggaaggaaagggaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagcatgtcaagcccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatccttttaggtgtatttggtttgatttggtctctctacactgtttacacttctggacttgatgaagatgaagaatctggaatgtctctttaattnttgtctattattttttttttgtcatactataatcaaactgtaatgaatttaactaaaaaaaaaaaaaaaaaaactcgagac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24843" stop="23082"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24543" g_stop="24408" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23382" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="499" r_length="363" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="500" polyA_stop="518"/>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E297873" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297873" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24543" e_stop="24408"/>
          <exon e_start="23744" e_stop="23382"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTA</genome_strand>
        <mrna_strand>AAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTNTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTGTAATGAATTTAACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E293036" ref_strand="+" ref_description="SGN-E293036 [cLET-12-E19]">
      <seq>tgataatagccctatcaacaaaaaaaagttagaagttgtgatcattctctgggactaatacagaaatggcaaccatcactgcttgcaccacaacttcttcggtggcgcgtgccgccctcgtgcaaaggggatctgtatctcgcacctcagttgttcttggattaccatcaatgagcaagggtggaaaagtgaaatgttcaatggaaggaaagggaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagcatgtcaagcccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatctggactcagcaacaatcttcttggttggatccttttaggagtatttggtttgatttggtctctctacactgtttaccacttctggacttgatgaaaatgaagaatctggaatgtctctttaatttttggctattattttttttttggcatactataatcaaactttaatgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24866" stop="23089"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24566" g_stop="24408" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23389" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="516" r_length="357" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E293036" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293036" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24566" e_stop="24408"/>
          <exon e_start="23744" e_stop="23389"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATAATAGCCCTATCAACAAAAAAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTA-CACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAAT</genome_strand>
        <mrna_strand>TGATAATAGCCCTATCAACAAAAAAAAGTTAGAAGTTGTGATCATTCTCTGGGACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATCTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGAGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACCACTTCTGGACTTGATGAAAATGAAGAATCTGGAATGTCTCTTTAATTTTTGGCTATTATTTTTTTTTTGGCATACTATAATCAAACTTTAATGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E291418" ref_strand="+" ref_description="SGN-E291418 [cLET-2-P6]">
      <seq>aagttagaagttgtgatcattctctctcactaatacagaaatggcaaccatcactgcttgcaccacaacttcttcggtggcgcgtgccgccctcgtgcaaaggggatctgtatctcgcacctcagttgttcttggattaccatcaatgagcaagggtggaaaagtgaaatgttcaatggaaggaaagggaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagcatgtcacgcccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatccttttaggtgtatttggtttgatttggtctctctacactgtttacacttctggacttgatgaagatgaagaatctggaatgtctctttaattctagtctattattttttttttgtcatactataatcaaactttaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24841" stop="23093"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24541" g_stop="24408" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23393" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="486" r_length="352" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E291418" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291418" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24541" e_stop="24408"/>
          <exon e_start="23744" e_stop="23393"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAAT</genome_strand>
        <mrna_strand>AAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCACGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTCTAGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E712975" ref_strand="+" ref_description="SGN-E712975 [FB06BE02]">
      <seq>tgatcattctctctcactaatacagaaatggcaaccatcactgcttgcaccacaacttcttcggtggcgcgtgccgccctcgtgcaaaggggatctgtatctcgcacctcagttgttcttggattaccatcaatgagcaagggtggaaaagtgaaatgttcaatggaaggaaagggaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagcatgtcaagcccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatccttttaggtgtatttggtttgatttggtctctctacactgtttacacttctggacttgatgaagatgaagaatctggaatgtctctttaatttttgtctattattttttttttgccatactataatcaaactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24828" stop="23097"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24528" g_stop="24408" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23397" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="469" r_length="348" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E712975" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712975" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24528" e_stop="24408"/>
          <exon e_start="23744" e_stop="23397"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTT</genome_strand>
        <mrna_strand>TGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGCCATACTATAATCAAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E292912" ref_strand="+" ref_description="SGN-E292912 [cLET-11-D2]">
      <seq>aaaaaaaagttagaagttgtgatcattctctctcactaatacagaaatggcaaccatcactgcttgcaccacaacttcttcggtggcgcgtgccgccctcgtgcaaaggggatctgtatctcgcacctcagttgttcttggattaccatcaatgagcaagggtggaaaagtgaaatgttcaatggaaggaaagggaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagcatgtcaagcccagtaacaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatccttttatgtgtattcggtttgatttggtctctctacactgtttacacttctggacttgatgaagatgaagaatctggaatgtctctttaatatttgtctattattttttttttgtcatacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24847" stop="23108"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24547" g_stop="24408" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23408" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="477" r_length="337" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E292912" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292912" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24547" e_stop="24408"/>
          <exon e_start="23744" e_stop="23408"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTA</genome_strand>
        <mrna_strand>AAAAAAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAACAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTATGTGTATTCGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATATTTGTCTATTATTTTTTTTTTGTCATACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E281193" ref_strand="-" ref_description="SGN-E281193 [cLEL-1-A5](-)">
      <seq>gcacgaggtggcgcgtgccgccctcgtgcaaaggggatctgtatctcgcacctcagttgttcttggattaccatcaatgagcaagggtggccaagtgaaatgttcaatggaaggaaagggaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagcatgtcaagcccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatccttttaggtgtatttggtttgatttggtctctctacactgtttacacttctggacttgatgaagatgaagaatctggaatgtctcttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24766" stop="23141"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24472" g_stop="24408" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="0.908"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23441" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="369" r_length="304" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E281193" ref_strand="-">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>369</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281193" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="24472" e_stop="24408"/>
          <exon e_start="23744" e_stop="23441"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTA</genome_strand>
        <mrna_strand>GCACGAGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCAATGAGCAAGGGTGGCCAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E401876" ref_strand="+" ref_description="SGN-E401876 [PPC-5-J13]">
      <seq>ttgatatcaacaaagaagttgaagttgtgatcattctctctcagtaatacagaaatggcaaccatcactgcttgcaccacaacttcttctgtggcacgtgccgccctcgtgcaaaggggatctgtatcccgcacctcaactattcttggattaccatccatgagcaagggtgaaaaagtgaaatgctcaatggaaggaaagccaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagcatgtcaaacccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatcctttttggtgtatttggcttgatttggtctctctacactgtctacacttctggaattgatgatgatgaagaatctgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24853" stop="23152"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24558" g_stop="24408" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="0.901"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23452" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="441" r_length="293" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E401876" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E401876" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24558" e_stop="24408"/>
          <exon e_start="23744" e_stop="23452"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCCTATCAACAAAAAAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGA</genome_strand>
        <mrna_strand>TTGATATCAAC-AA-AGAAGTT-GAAGTTGTGATCATTCTCTCTCAGTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCTGTGGCACGTGCCGCCCTCGTGCAAAGGGGATCTGTATCCCGCACCTCAACTATTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCCATGAGCAAGGGTGAAAAAGTGAAATGCTCAATGGAAGGAAAGCCAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAACCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTTGGTGTATTTGGCTTGATTTGGTCTCTCTACACTGTCTACACTTCTGGAATTGATGATGATGAAGAATCTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E232747" ref_strand="+" ref_description="SGN-E232747 [cLED-8-C6]">
      <seq>aaagttagaagttgtgatcattctctctcactaatacagaaatggcaaccatcactgcttgcaccacaacttcttcggtggcgcgtgccgccctcgtgcaaaggggatctgtatctcgcacctcagttgttcttggattaccatcaatgagcaagggtggaaaagtgaaatgttcaatggaaggaaagggaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagcatgtcaagcccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatccttttaggtgtatttggtttgatttggtctctctacactgtttacacttctggacttgatgaagatgaagaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24842" stop="23156"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24542" g_stop="24408" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23456" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="424" r_length="289" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E232747" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232747" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24542" e_stop="24408"/>
          <exon e_start="23744" e_stop="23456"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATC</genome_strand>
        <mrna_strand>AAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E292047" ref_strand="+" ref_description="SGN-E292047 [cLET-1-A1]">
      <seq>aagttagaagttgtgatcattctatctcactaatacagaaatggcaaccatcactgcttgcaccacaacttcttcggtggcgcgtgccgccctcgtgcaaaggggatctgtatctcgcacctcagttgttcttggattaccatcaatgagcaagggtggaaaagtgaaatgttcaatggaaggaaagggaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagcgtgtcaagcccagttgcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagtaacagtcttcttggttggatccttttacgtgtatttggtttgatttggtctctctacactgtttacacttctggacttgatgaagatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24841" stop="23162"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24541" g_stop="24408" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23462" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="417" r_length="283" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E292047" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292047" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24541" e_stop="24408"/>
          <exon e_start="23744" e_stop="23462"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGA</genome_strand>
        <mrna_strand>AAGTTAGAAGTTGTGATCATTCTATCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCGTGTCAAGCCCAGTTGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGTAACAGTCTTCTTGGTTGGATCCTTTTACGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E296835" ref_strand="+" ref_description="SGN-E296835 [cLET-26-P5]">
      <seq>aagttgtgatcattctctctcactaatacagaaatggcagccatcactgcttgcaccacaacttcttcggtggcgcgtgccgccctcgtgcaaaggggatctgtatctcgcacctcagttgatcttggattaccatcaatgagcaagggtggaaaagtgaaatgttcaatggaaggaaagggaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcaacagtagcaccaagcatgtcaagcccagtaacaatggctttggttgatgaaagaatgagcactgaacgaacagggctaccatttggactcagcaacaatcttcttggttggatccttttacgtgtatctggttagatttggtctctctacactgtttacacttctggacttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24834" stop="23170"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24534" g_stop="24408" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23470" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="402" r_length="275" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E296835" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296835" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24534" e_stop="24408"/>
          <exon e_start="23744" e_stop="23470"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGAT</genome_strand>
        <mrna_strand>AAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAGCCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGATCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAACAGTAGCACCAAGCATGTCAAGCCCAGTAACAATGGCTTTGGTTGATGAAAGAATGAGCACTGAACGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTACGTGTATCTGGTTAGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E391204" ref_strand="+" ref_description="SGN-E391204 [TUS-48-D15]">
      <seq>aggtatcacatttgaggaatggtagacgacttgaaggaagcatgagtagcattaagcatgtcaagcccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcagcaacaatcttcttggttggatccttttaggtgtatttggtttgatttggtcactctacactgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="23982" stop="23189"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23684" g_stop="23489" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E391204" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>196</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391204" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23684" e_stop="23489"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAATCAAAGTTG-GGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGT</genome_strand>
        <mrna_strand>AGGTATCACATTTGAGGAATGGTAGACGACTTGAAGGAAGCATGAGTAGCATTAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCACTCTACACTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E296902" ref_strand="+" ref_description="SGN-E296902 [cLET-26-M5]">
      <seq>agttagaagttgtgatcattctctctcactaatacagaaatggcaaccatcactgcttgcaccacaacttcttcggtggcgcgtgccgccctcgtgcaaaggggatctgtatctcgcacctcagttggtcttggattaccatcaatgagcaagggtggaaaagtgaaatgttcaatggaaggaaagggaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagcatgtcaagcccagtagcaatggctttggttgatgaaagaatgagcactgaaagaacaaggctaccatttggactcaacaacaatcttcttgggtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24840" stop="23233"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24540" g_stop="24408" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23533" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="345" r_length="212" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E296902" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>345</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296902" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24540" e_stop="24408"/>
          <exon e_start="23744" e_stop="23533"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGG</genome_strand>
        <mrna_strand>AGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGGTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAAGAACAAGGCTACCATTTGGACTCAACAACAATCTTCTTGGGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E475421" ref_strand="+" ref_description="SGN-E475421 [cSTB-40-A1]">
      <seq>cttatttgatatcaacaaagaagttgaagttgtgatcattctctctcagtaatacagaaatggcaaccatcactgcttgcaccacaacttcttctgtggcacgtgccgccctcgtgcaaaggggatctgtatcccgcacctcaactattcttggattaccatccatgagcaagggtggaaaagtgaaatgctcaatggaaggaaagccaaagggtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagtatgtcaaacccagtagcaatggctttggttgatgaaagaatgagcactgaaggaacagggctaccatttggactcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24853" stop="23252"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24547" g_stop="24408" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="153" r_length="139" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23552" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="346" r_length="193" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E475421" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>333</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E475421" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24547" e_stop="24408"/>
          <exon e_start="23744" e_stop="23552"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAG</genome_strand>
        <mrna_strand>ACAAAGAAGTT-GAAGTTGTGATCATTCTCTCTCAGTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCTGTGGCACGTGCCGCCCTCGTGCAAAGGGGATCTGTATCCCGCACCTCAACTATTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCCATGAGCAAGGGTGGAAAAGTGAAATGCTCAATGGAAGGAAAGCCAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGTATGTCAAACCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E297515" ref_strand="+" ref_description="SGN-E297515 [cLET-28-D9]">
      <seq>aaagttagaagttgtgatcattttctcttactaatacagaaatggcaaccatcactgcttgcaccacaacttcttcggtggcgcgtgccgccctcgtgcaaaggggatctgtatctcgcacctcagttgttcttggattaccatcaatgagcaagggtggaaaagtgaaatgttcaatggaaggaaagggaaagtgaatcaaagttgggaatgggagaatcattgatggcagcagcagtagcagcaagcatgtcaagcccagtagcaatggctccggctgatgaaagaatgagcactgaaggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24842" stop="23274"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24542" g_stop="24408" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23574" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="304" r_length="169" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E297515" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>306</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297515" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24542" e_stop="24408"/>
          <exon e_start="23744" e_stop="23574"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAA</genome_strand>
        <mrna_strand>AAAGTTAGAAGTTGTGATCATTTTCTCTTACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAA--GTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTCCGGCTGATGAAAGAATGAGCACTGAAGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E291247" ref_strand="+" ref_description="SGN-E291247 [cLET-2-N23]">
      <seq>gatcattctctttcacttatacagaaatggcaaccattactgcttgcaccacaacttcttcggtggcgcgtgccgccctcgtgcaaaggggatctgtatctggcacctcagttgttattggattaccatcaatgagcaacggtggaaaagtgaaatgttcaatggaaggaaagggtaagggtgaatcaaagtttggaatgggagaatcattgctggcagcagcagtagctgcaagcatgtcaagcccagaatcaatggctttggttgatgaaagaatgagcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24827" stop="23281"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24527" g_stop="24408" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23581" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="284" r_length="164" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E291247" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>284</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291247" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24527" e_stop="24408"/>
          <exon e_start="23744" e_stop="23581"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACT</genome_strand>
        <mrna_strand>GATCATTCTCTTTCACTTATACAGAAATGGCAACCATTACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTGGCACCTCAGTTGTTATTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCAATGAGCAACGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGTAAGGGTGAATCAAAGTTTGGAATGGGAGAATCATTGCTGGCAGCAGCAGTAGCTGCAAGCATGTCAAGCCCAGAATCAATGGCTTTGGTTGATGAAAGAATGAGCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E472902" ref_strand="+" ref_description="SGN-E472902 [cSTB-30-E6]">
      <seq>cattctctctcagtgatacagaaatggcaaccatcactgcttgcaccacaacttcttctgtggcacgtgccgccctcgtgcaaaggggatctgtatcccacacctaaactattcttggatgaccatacatgagcaagggtggaaaagtgaaatgctcaatggaaggaaagccaaagggtgaatcaaatgtgggaatgggagaatcattgatggcagcagcagtagcatgcaagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24824" stop="23328"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24524" g_stop="24408" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="0.915"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="0.88"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23628" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="235" r_length="118" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E472902" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>234</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E472902" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24524" e_stop="24408"/>
          <exon e_start="23744" e_stop="23628"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCA-GCAAGCA</genome_strand>
        <mrna_strand>CATTCTCTCTCAGTGATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCTGTGGCACGTGCCGCCCTCGTGCAAAGGGGATCTGTATCCCACACCTAAACTATTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGACCATACATGAGCAAGGGTGGAAAAGTGAAATGCTCAATGGAAGGAAAGCCAAAGGGTGAATCAAATGTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCATGCAAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E295765" ref_strand="+" ref_description="SGN-E295765 [cLET-25-C6]">
      <seq>aaaaaaaagttacaagttgtgatcattctctctcactagtacacaaatggcaaccatcactgcttgcaccacaacttcttcggtggcgcgtgccgccctcgtgcaaaggggatctgtatctcgcacctcaaaagttcttggattaccatcaatgagcaagggtggaaaagtgaaatgcatcaatggaaggaaagggaaagggagaatcaaagttgggaatgggagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="24847" stop="23359"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24547" g_stop="24408" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23744" g_stop="23659" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="227" r_length="87" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E295765" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>226</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295765" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24547" e_stop="24408"/>
          <exon e_start="23744" e_stop="23659"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTGGTACGTTCATTTTCTAGTTTAATTTCATAAATTTCGAAGTATGATAGTTTTAGTTTATCGCAAGTTCAATCTCAAGAAGTTGAAAGTAAATTCGTTTCACATGTATAAGCATGTCTATCATTCATCGCTTAGGGTTAATAACAATGTTGAGTTCATACATCGATTTAGAGAGGCATTATTGATCGGTTTCTTTTATATAGTTTTCGATAATTTTCACTTATTTAGGGACTTTTGGACTTAAATTAAGTCCAAAATTCACGAGCATGGGTTCATCGATCTTTACATACGTATAACACACACATTCACCTAAAAGTTACTCTGTTTTATTTCAATTCATGTTATATTTTTATTTTTCAAAATTCAAAGTCTGCAAACATTGATCAATAATTTAAAAAATATATCTTTTTTACATTGAAAGAGAATTGCAAATTATAGTATAAACTTTGAATAGATGAATTTTAATCCATCAGTCAAATTGATTCTTAGAAAACACGAAGATTGAGACAAAATTAGAAAATAGTATATATATCAAAGTCAGAACTAGTTTGAACCTTGTACCTTCTTCAAAGATTAGTCAAATTGATTCTCAAAAATCAAAAAGCGCCACATATATTAGGACAGAGTAAATATTTAAATTTAAATTCTGAATCTGTGTTTATTCAGGATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATG-TTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAA</genome_strand>
        <mrna_strand>AAAAAAAAGTTACAAGTTGTGATCATTCTCTCTCACTAGTACACAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAAAAGTTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGCATCAATGGAAGGAAAGGGAAAGGGAGAATCAAAGTTGGGAATGGGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E369430" ref_strand="+" ref_description="SGN-E369430 [TUS-23-K21]">
      <seq>taatgttcttcctgttgttgaagaacttcaaagaagattgccattgccagctattagcttaggagaaggtgaagatgatgatcaatctgttgttaatgggacacgaaatgaaatgcaaaccattgaaccaactgagtttccttttgaatttcgagctttagaagtagcactagaaggagtatgcagttatcttgacactcagacacgagaactagagactgctgcttacccggctttagatgagctcacctcaaagattagtagtcgcaacctggatagagtgcgcaaattgaagagtgcaatgactaggttgactagtcgggttcaaaaagtaagggatgatcttgaacaactactcgaagatgatggtgacatggctgacctttatctctcaagaaaattagttgccggagtttcatcccccctgagtggtcaggtggcaccttactggtctcctgatacgttctcaatacgctcaaagctattatccaaagcaagcaggatcagtgggataactcatgaggagactgatgttgaggaacttgaaatgttgcttgaggcgtactttgtgcaaattgaaagcacgatgaacaaattgacaacgctgcgcgaatatattgatgacactgaggactatatcaatattcagctggacaatcatcgaaatcagctgatccagttggagctgttcctgagttctggtacagtttgtttgacagtgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="+" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="28989" stop="31949"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29289" g_stop="29422" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29423" i_stop="29531" i_length="109">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.892" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29532" g_stop="29653" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="256" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29654" i_stop="30610" i_length="957">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30611" g_stop="30685" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="331" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30686" i_stop="30854" i_length="169">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30855" g_stop="31082" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="559" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31083" i_stop="31165" i_length="83">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31166" g_stop="31210" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="604" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="31211" i_stop="31323" i_length="113">
            <donor d_prob="0.591" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="31324" g_stop="31368" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="605" r_stop="649" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="31369" i_stop="31468" i_length="100">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="31469" g_stop="31498" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="650" r_stop="679" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="31499" i_stop="31605" i_length="107">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.643" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="31606" g_stop="31649" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="680" r_stop="723" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="+" ref_id="SGN-E369430" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369430" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29289" e_stop="29422"/>
          <exon e_start="29532" e_stop="29653"/>
          <exon e_start="30611" e_stop="30685"/>
          <exon e_start="30855" e_stop="31082"/>
          <exon e_start="31166" e_stop="31210"/>
          <exon e_start="31324" e_stop="31368"/>
          <exon e_start="31469" e_stop="31498"/>
          <exon e_start="31606" e_stop="31649"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGTTCTTCCTGTTGTTGAAGAACTTCAAAGAAGATTGCCATTGCCAGCTATTAGCTTAGGAGAAGGTGAAGATGATGATCAATCTGTTGTTAATGGGACACGAAATGAAATGCAAACCATTGAACCAACTGGTATGCACCTACTGCTTCTTATTTCGGTGTTGAGTTGTTGGTTACTATGTGTTCTTTCTATGCAAGCAACACGATTGCTAATCATCCGTTCCTATTATTTGTGATGCAGAGTTTCCTTTTGAATTTCGAGCTTTAGAAGTAGCACTAGAAGGAGTATGCAGTTATCTTGACACTCAGACACGAGAACTAGAGACTGCTGCTTACCCGGCTTTAGATGAGCTCACCTCAAAGGTAAGATAGTAAATCGATATGTTATAAGGTCACTTTCATGTTTAGTGCAACTAACTACCTGTAAAAGAGTGTGGTAATCGTTTGAAGCTGATCAAATTGCCTAAAATTGTCTACCTAAGTAGATAAAATTTGTTTGGTTTGAAATTATCTTTGATTATTTTGCATTGAGTTGCTCTAATTACCATTAATCAATTGCCATGTCCTGCCGCTCTTGAAAGTTATATCTACTTGCTACCACCGAATGTCCAACAAGTTTCTGTTGTTCGATAAGTTGACATGTTATATATGATGGTTTCGTCATTGTTTTCTTCCAAAGCAGTGGATTAGCACCTTCCTTTTCTAATTGATTAATGTAGAACTAAGTTAACAGCGGAAGATCTATTGTGAAAACGCTATATTTAGCGTTCTCCCACTTGTCTATGGCTTGAAAGTCAGAAGGGAAGAAAAGGGAAAAAGATAATTAGTTTGTTGCAATGTTATGTTAAGCATAGACTTATAAAACAATGTTCATAGAAGAGGGAATTACAGAGTCTTTATAGGTAAGGGAAACGATCACTTCTAACTGATGGATGGATTAATGAAGTTTTATTACAAAAACTTGCTATCAGATATATTTACCTCACCGCAGAATCAGGTCGAATGTGTTGTAAGAATTATCCTAGATATAGACTTATCTACGTCAACCAAGATTGGTTTTATTTGAACAGGAGGCAACATATTAATAACGACCTTGCCTGATTGTTTTGCATAAATTTGAATTGACAAAATGTCCCTCCTCAACTGTTTGTTCATCCCAAGTACAACTAAGGAAACCATTGTTTAGTTGCTTTACTGGATAGCATTTTGGTTATGATATGTATGTGCTTGCGCACAGAGCATTTATTAGTCTCTCTTGATCAGTTTGTTTCCCAAGTACCTTTTCTTCTAATGTGTGATTTTTCTTTTACTAATTTGCAGATTAGTAGTCGCAACCTGGATAGAGTGCGCAAATTGAAGAGTGCAATGACTAGGTTGACTAGTCGGGTTCAAAAAGTATGTCTCTCTTTTTCTTCTACATGTTATATCCTGAAACATACAAGATGTTCTGGTCTATGCGTCCGTTTATGGACTAATGATATGGTGTCTAAAAGGAAAAAGATGAGTTCATCTAGAGCTGAATGTTTTGTTAATCTAATTTAATCTAAATTATGCCAATATCTAGGTAAGGGATGATCTTGAACAACTACTCGAAGATGATGGTGACATGGCTGACCTTTATCTCTCAAGAAAATTAGTTGCCGGAGTTTCATCCCCCCTGAGTGGTCAGGTGGCACCTTACTGGTCTCCTGATACGTTCTCAATACGCTCAAAGCTATTATCCAAAGCAAGCAGGATCAGTGGGATAACTCATGAGGAGACTGATGTTGAGGAACTTGAAATGTTGCTTGAGGTTAGTATCATCACAAACTTACACACTTTGGCCTAATTAATCCCCGGATACTTGTGTTTTTCAATAACTACATGCTTTTGCAGGCGTACTTTGTGCAAATTGAAAGCACGATGAACAAATTGACAACGGTAAGACAATGAAAAAAACAGGAACCTGGTGCCCTTTACATAGCCAAAATGAAATAATGAACTGATCATTGATAACTCTAATTACATAGTGATACTCGTGTTCCTTTATCCAGCTGCGCGAATATATTGATGACACTGAGGACTATATCAATATTCAGGTTACTACTCCGCGCTGATTCAACTTGTTGTGTGATGCTAAAACCTTGTAGCTTTAGGAACTATACACAAAACTAACAGTAAATTCCTTGTTGCTGGCAGCTGGACAATCATCGAAATCAGCTGATCCAGGTATGTTGAAATGTGTACCATCTTGTTAAATGTATCCTGTATAAGTCTGCTACTTCTCGACTTGTATATAGGCGAATAAATAGCATTTGTTTTGATTGATACCGCAGTTGGAGCTGTTCCTGAGTTCTGGTACAGTTTGTTTGACAGTGTA</genome_strand>
        <mrna_strand>TAATGTTCTTCCTGTTGTTGAAGAACTTCAAAGAAGATTGCCATTGCCAGCTATTAGCTTAGGAGAAGGTGAAGATGATGATCAATCTGTTGTTAATGGGACACGAAATGAAATGCAAACCATTGAACCAACTG.............................................................................................................AGTTTCCTTTTGAATTTCGAGCTTTAGAAGTAGCACTAGAAGGAGTATGCAGTTATCTTGACACTCAGACACGAGAACTAGAGACTGCTGCTTACCCGGCTTTAGATGAGCTCACCTCAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGTAGTCGCAACCTGGATAGAGTGCGCAAATTGAAGAGTGCAATGACTAGGTTGACTAGTCGGGTTCAAAAA.........................................................................................................................................................................GTAAGGGATGATCTTGAACAACTACTCGAAGATGATGGTGACATGGCTGACCTTTATCTCTCAAGAAAATTAGTTGCCGGAGTTTCATCCCCCCTGAGTGGTCAGGTGGCACCTTACTGGTCTCCTGATACGTTCTCAATACGCTCAAAGCTATTATCCAAAGCAAGCAGGATCAGTGGGATAACTCATGAGGAGACTGATGTTGAGGAACTTGAAATGTTGCTTGAG...................................................................................GCGTACTTTGTGCAAATTGAAAGCACGATGAACAAATTGACAACG.................................................................................................................CTGCGCGAATATATTGATGACACTGAGGACTATATCAATATTCAG....................................................................................................CTGGACAATCATCGAAATCAGCTGATCCAG...........................................................................................................TTGGAGCTGTTCCTGAGTTCTGGTACAGTTTGTTTGACAGTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E246204" ref_strand="+" ref_description="SGN-E246204 [cLEF-40-J14]">
      <seq>taatgttcttcctgttgttgaagaacttcaaagaagattgccattgccagctattagcttaggagaaggtgaagatgatgatcaatctgttgttaatgggacacgaaatgaaatgcaaaccattgaaccaactgagtttccttttgaatttcgagctttagaagtagcactagaaggagtatgcagttatcttgacactcagacacgagaactagagactgctgcttacccggctttagatgagctcacctcaaagattagtagtcgcaacctggatagagtgcgcaaattgaagagtgcaatgactaggttgactagtcgggttcaaaaagtaagggatgatcttgaacaactactcgaagatgatggtgacatggctgacctttatctctcaagaaaattagttgccggagtttcatcccccctgagtggtcaggtggcaccttactggtctcctgatacgttctcaatacgctcaaagctattatccaaagcaagcaggatcagtgggataactcatgaggagactgatgttgaggaacttgaaatgttgcttgaggcgtactttgtgcaaattgaaagcacgatgaacaaattgacaacgctgcgcgaatatattgatgacact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="+" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="28989" stop="31647"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29289" g_stop="29422" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29423" i_stop="29531" i_length="109">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.892" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29532" g_stop="29653" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="256" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29654" i_stop="30610" i_length="957">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30611" g_stop="30685" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="331" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30686" i_stop="30854" i_length="169">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30855" g_stop="31082" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="559" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31083" i_stop="31165" i_length="83">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31166" g_stop="31210" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="604" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="31211" i_stop="31323" i_length="113">
            <donor d_prob="0.591" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="31324" g_stop="31347" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="605" r_stop="628" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="+" ref_id="SGN-E246204" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246204" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29289" e_stop="29422"/>
          <exon e_start="29532" e_stop="29653"/>
          <exon e_start="30611" e_stop="30685"/>
          <exon e_start="30855" e_stop="31082"/>
          <exon e_start="31166" e_stop="31210"/>
          <exon e_start="31324" e_stop="31347"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGTTCTTCCTGTTGTTGAAGAACTTCAAAGAAGATTGCCATTGCCAGCTATTAGCTTAGGAGAAGGTGAAGATGATGATCAATCTGTTGTTAATGGGACACGAAATGAAATGCAAACCATTGAACCAACTGGTATGCACCTACTGCTTCTTATTTCGGTGTTGAGTTGTTGGTTACTATGTGTTCTTTCTATGCAAGCAACACGATTGCTAATCATCCGTTCCTATTATTTGTGATGCAGAGTTTCCTTTTGAATTTCGAGCTTTAGAAGTAGCACTAGAAGGAGTATGCAGTTATCTTGACACTCAGACACGAGAACTAGAGACTGCTGCTTACCCGGCTTTAGATGAGCTCACCTCAAAGGTAAGATAGTAAATCGATATGTTATAAGGTCACTTTCATGTTTAGTGCAACTAACTACCTGTAAAAGAGTGTGGTAATCGTTTGAAGCTGATCAAATTGCCTAAAATTGTCTACCTAAGTAGATAAAATTTGTTTGGTTTGAAATTATCTTTGATTATTTTGCATTGAGTTGCTCTAATTACCATTAATCAATTGCCATGTCCTGCCGCTCTTGAAAGTTATATCTACTTGCTACCACCGAATGTCCAACAAGTTTCTGTTGTTCGATAAGTTGACATGTTATATATGATGGTTTCGTCATTGTTTTCTTCCAAAGCAGTGGATTAGCACCTTCCTTTTCTAATTGATTAATGTAGAACTAAGTTAACAGCGGAAGATCTATTGTGAAAACGCTATATTTAGCGTTCTCCCACTTGTCTATGGCTTGAAAGTCAGAAGGGAAGAAAAGGGAAAAAGATAATTAGTTTGTTGCAATGTTATGTTAAGCATAGACTTATAAAACAATGTTCATAGAAGAGGGAATTACAGAGTCTTTATAGGTAAGGGAAACGATCACTTCTAACTGATGGATGGATTAATGAAGTTTTATTACAAAAACTTGCTATCAGATATATTTACCTCACCGCAGAATCAGGTCGAATGTGTTGTAAGAATTATCCTAGATATAGACTTATCTACGTCAACCAAGATTGGTTTTATTTGAACAGGAGGCAACATATTAATAACGACCTTGCCTGATTGTTTTGCATAAATTTGAATTGACAAAATGTCCCTCCTCAACTGTTTGTTCATCCCAAGTACAACTAAGGAAACCATTGTTTAGTTGCTTTACTGGATAGCATTTTGGTTATGATATGTATGTGCTTGCGCACAGAGCATTTATTAGTCTCTCTTGATCAGTTTGTTTCCCAAGTACCTTTTCTTCTAATGTGTGATTTTTCTTTTACTAATTTGCAGATTAGTAGTCGCAACCTGGATAGAGTGCGCAAATTGAAGAGTGCAATGACTAGGTTGACTAGTCGGGTTCAAAAAGTATGTCTCTCTTTTTCTTCTACATGTTATATCCTGAAACATACAAGATGTTCTGGTCTATGCGTCCGTTTATGGACTAATGATATGGTGTCTAAAAGGAAAAAGATGAGTTCATCTAGAGCTGAATGTTTTGTTAATCTAATTTAATCTAAATTATGCCAATATCTAGGTAAGGGATGATCTTGAACAACTACTCGAAGATGATGGTGACATGGCTGACCTTTATCTCTCAAGAAAATTAGTTGCCGGAGTTTCATCCCCCCTGAGTGGTCAGGTGGCACCTTACTGGTCTCCTGATACGTTCTCAATACGCTCAAAGCTATTATCCAAAGCAAGCAGGATCAGTGGGATAACTCATGAGGAGACTGATGTTGAGGAACTTGAAATGTTGCTTGAGGTTAGTATCATCACAAACTTACACACTTTGGCCTAATTAATCCCCGGATACTTGTGTTTTTCAATAACTACATGCTTTTGCAGGCGTACTTTGTGCAAATTGAAAGCACGATGAACAAATTGACAACGGTAAGACAATGAAAAAAACAGGAACCTGGTGCCCTTTACATAGCCAAAATGAAATAATGAACTGATCATTGATAACTCTAATTACATAGTGATACTCGTGTTCCTTTATCCAGCTGCGCGAATATATTGATGACACT</genome_strand>
        <mrna_strand>TAATGTTCTTCCTGTTGTTGAAGAACTTCAAAGAAGATTGCCATTGCCAGCTATTAGCTTAGGAGAAGGTGAAGATGATGATCAATCTGTTGTTAATGGGACACGAAATGAAATGCAAACCATTGAACCAACTG.............................................................................................................AGTTTCCTTTTGAATTTCGAGCTTTAGAAGTAGCACTAGAAGGAGTATGCAGTTATCTTGACACTCAGACACGAGAACTAGAGACTGCTGCTTACCCGGCTTTAGATGAGCTCACCTCAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGTAGTCGCAACCTGGATAGAGTGCGCAAATTGAAGAGTGCAATGACTAGGTTGACTAGTCGGGTTCAAAAA.........................................................................................................................................................................GTAAGGGATGATCTTGAACAACTACTCGAAGATGATGGTGACATGGCTGACCTTTATCTCTCAAGAAAATTAGTTGCCGGAGTTTCATCCCCCCTGAGTGGTCAGGTGGCACCTTACTGGTCTCCTGATACGTTCTCAATACGCTCAAAGCTATTATCCAAAGCAAGCAGGATCAGTGGGATAACTCATGAGGAGACTGATGTTGAGGAACTTGAAATGTTGCTTGAG...................................................................................GCGTACTTTGTGCAAATTGAAAGCACGATGAACAAATTGACAACG.................................................................................................................CTGCGCGAATATATTGATGACACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392799" ref_strand="+" ref_description="SGN-E392799 [TUS-36-P10]">
      <seq>tggcaccttactggtctcctgatacgttctcaatacgctcaaagctattatccaaagcaagcaggatcagtgggataactcatgaggagactgatgttgaggaacttgaaatgttgcttgaggcgtactttgtgcaaattgaaagcacgatgaacaaattgacaacggtaagacaatgaaaaaaacaggaacctggtgccctttacatagccaaaatgaaataatgaactgatcattgataactctaattacatagtgatactcgtgttcctttatccagctgcgcgaatatattgatgacactgaggactatatcaatattcagctggacaatcatcgaaatcagctgatccagttggagctgttcctgagttctggtacagtttgtttgacagtgtactccttggtggctgcaatatttggaatgaatattccagttccatggaagaaagaccatggctacctttttaaatgggtggtcattctttctggaattgcttctgcatccgttttcctatcaataattgcatatgctaggcacaagggtcttgttggatcttaaatcttaatacctattactcctccgatctctatatataaatataaaatacaccagacatgtcaacatgttgaaatttaatttctaaattgtaactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="+" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="30661" stop="32750"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30961" g_stop="31082" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31083" i_stop="31165" i_length="83">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31166" g_stop="31368" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="325" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31369" i_stop="31468" i_length="100">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31469" g_stop="31498" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="355" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31499" i_stop="31605" i_length="107">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.643" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31606" g_stop="31725" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="475" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31726" i_stop="32268" i_length="543">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32269" g_stop="32450" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="657" r_length="182" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="+" ref_id="SGN-E392799" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392799" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30961" e_stop="31082"/>
          <exon e_start="31166" e_stop="31368"/>
          <exon e_start="31469" e_stop="31498"/>
          <exon e_start="31606" e_stop="31725"/>
          <exon e_start="32269" e_stop="32450"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCACCTTACTGGTCTCCTGATACGTTCTCAATACGCTCAAAGCTATTATCCAAAGCAAGCAGGATCAGTGGGATAACTCATGAGGAGACTGATGTTGAGGAACTTGAAATGTTGCTTGAGGTTAGTATCATCACAAACTTACACACTTTGGCCTAATTAATCCCCGGATACTTGTGTTTTTCAATAACTACATGCTTTTGCAGGCGTACTTTGTGCAAATTGAAAGCACGATGAACAAATTGACAACGGTAAGACAATGAAAAAAACAGGAACCTGGTGCCCTTTACATAGCCAAAATGAAATAATGAACTGATCATTGATAACTCTAATTACATAGTGATACTCGTGTTCCTTTATCCAGCTGCGCGAATATATTGATGACACTGAGGACTATATCAATATTCAGGTTACTACTCCGCGCTGATTCAACTTGTTGTGTGATGCTAAAACCTTGTAGCTTTAGGAACTATACACAAAACTAACAGTAAATTCCTTGTTGCTGGCAGCTGGACAATCATCGAAATCAGCTGATCCAGGTATGTTGAAATGTGTACCATCTTGTTAAATGTATCCTGTATAAGTCTGCTACTTCTCGACTTGTATATAGGCGAATAAATAGCATTTGTTTTGATTGATACCGCAGTTGGAGCTGTTCCTGAGTTCTGGTACAGTTTGTTTGACAGTGTACTCCTTGGTGGCTGCAATATTTGGAATGAATATTCCAGTTCCATGGAAGAAAGACCATGGCTACCTTTTTAAATGGGTGCGCATACTCGATTCTTTTTCTAGGAGTAGTATATTATTATATCAATTCAAAAGTATATAGAAGTTAAACTCTAGAAGTAAAGCCTCGGAGCAACAATAAAGTTGTCTCTATTGTGGCTGTAGAATTGAGTCACTGATGTTTGCATCAGGACAGACTGCCTAAACATCACATTCTCTTGGGATGCAATCCTTCCTCGGATCCTGTGTGAATGCAGGATTCGAGCAACAATAAAGTTGTCTCTATTGTGGCTATAGAATCAAGCAATTGATGCTTGCGTCAGGATAGACTGCCTACGTATTGCACTCTCTTGGAATGCGATCCTTCCCTGGATCCCGTGTGAGTGCATGATTCGAGCAGCAATAAAGTTGTCTCTATTGTGGCTATAGAATCAGTCACTGATGATTGCGTCAGGATAGACTGTCTACACATATCACACTCTCTCAGGATGTGATCCTTCCCTAGATCCTGCGTGAATGCAGGATGCTTCGTACACTCAAAATATGTAAAAAAAAAAAATTAACCCTTGTATTTGTATTGCAGGTGGTCATTCTTTCTGGAATTGCTTCTGCATCCGTTTTCCTATCAATAATTGCATATGCTAGGCACAAGGGTCTTGTTGGATCTTAAATCTTAATACCTATTACTCCTCCGATCTCTATATATAAATATAAAATACACCAGACATGTCAACATGTTGAAATTTAATTTCTAAATTGTAACTT</genome_strand>
        <mrna_strand>TGGCACCTTACTGGTCTCCTGATACGTTCTCAATACGCTCAAAGCTATTATCCAAAGCAAGCAGGATCAGTGGGATAACTCATGAGGAGACTGATGTTGAGGAACTTGAAATGTTGCTTGAG...................................................................................GCGTACTTTGTGCAAATTGAAAGCACGATGAACAAATTGACAACGGTAAGACAATGAAAAAAACAGGAACCTGGTGCCCTTTACATAGCCAAAATGAAATAATGAACTGATCATTGATAACTCTAATTACATAGTGATACTCGTGTTCCTTTATCCAGCTGCGCGAATATATTGATGACACTGAGGACTATATCAATATTCAG....................................................................................................CTGGACAATCATCGAAATCAGCTGATCCAG...........................................................................................................TTGGAGCTGTTCCTGAGTTCTGGTACAGTTTGTTTGACAGTGTACTCCTTGGTGGCTGCAATATTTGGAATGAATATTCCAGTTCCATGGAAGAAAGACCATGGCTACCTTTTTAAATGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTCATTCTTTCTGGAATTGCTTCTGCATCCGTTTTCCTATCAATAATTGCATATGCTAGGCACAAGGGTCTTGTTGGATCTTAAATCTTAATACCTATTACTCCTCCGATCTCTATATATAAATATAAAATACACCAGACATGTCAACATGTTGAAATTTAATTTCTAAATTGTAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E241511" ref_strand="+" ref_description="SGN-E241511 [cLED-28-N17]">
      <seq>ggcaccttactggtctcctgatacgttctcaatacgctcaaagctattatccaaagcaagcaggatcagtgggataactcatgaggagactgatgttgaggaacttgaaatgttgcttgaggcgtactttgtgcaaattgaaagcacgatgaacaaattgacaacggtaagacaatgaaaaaaacaggaacctggtgccctttacatagccaaaatgaaataatgaactgatcattgataactctaattacatagtgatactcgtgttcctttatccagctgcgcgaatatattgatgacactgaggactatatcaatattcagctggacaatcatcgaaatcagctgatccagttggagctgttcctgagttctggtacagtttgtttgacagtgtactccttggtggctgcaatatttggaatgaatattccagttccatggaagaaagaccatggctacctttttaaatgggtggtcattctttctggaattgcttctgcatccggtttcctatcaataattgcatatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="+" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="30662" stop="32628"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30962" g_stop="31082" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31083" i_stop="31165" i_length="83">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31166" g_stop="31368" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="324" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31369" i_stop="31468" i_length="100">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31469" g_stop="31498" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="354" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31499" i_stop="31605" i_length="107">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.643" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31606" g_stop="31725" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="474" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31726" i_stop="32268" i_length="543">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32269" g_stop="32328" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="534" r_length="60" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="+" ref_id="SGN-E241511" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241511" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30962" e_stop="31082"/>
          <exon e_start="31166" e_stop="31368"/>
          <exon e_start="31469" e_stop="31498"/>
          <exon e_start="31606" e_stop="31725"/>
          <exon e_start="32269" e_stop="32328"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCACCTTACTGGTCTCCTGATACGTTCTCAATACGCTCAAAGCTATTATCCAAAGCAAGCAGGATCAGTGGGATAACTCATGAGGAGACTGATGTTGAGGAACTTGAAATGTTGCTTGAGGTTAGTATCATCACAAACTTACACACTTTGGCCTAATTAATCCCCGGATACTTGTGTTTTTCAATAACTACATGCTTTTGCAGGCGTACTTTGTGCAAATTGAAAGCACGATGAACAAATTGACAACGGTAAGACAATGAAAAAAACAGGAACCTGGTGCCCTTTACATAGCCAAAATGAAATAATGAACTGATCATTGATAACTCTAATTACATAGTGATACTCGTGTTCCTTTATCCAGCTGCGCGAATATATTGATGACACTGAGGACTATATCAATATTCAGGTTACTACTCCGCGCTGATTCAACTTGTTGTGTGATGCTAAAACCTTGTAGCTTTAGGAACTATACACAAAACTAACAGTAAATTCCTTGTTGCTGGCAGCTGGACAATCATCGAAATCAGCTGATCCAGGTATGTTGAAATGTGTACCATCTTGTTAAATGTATCCTGTATAAGTCTGCTACTTCTCGACTTGTATATAGGCGAATAAATAGCATTTGTTTTGATTGATACCGCAGTTGGAGCTGTTCCTGAGTTCTGGTACAGTTTGTTTGACAGTGTACTCCTTGGTGGCTGCAATATTTGGAATGAATATTCCAGTTCCATGGAAGAAAGACCATGGCTACCTTTTTAAATGGGTGCGCATACTCGATTCTTTTTCTAGGAGTAGTATATTATTATATCAATTCAAAAGTATATAGAAGTTAAACTCTAGAAGTAAAGCCTCGGAGCAACAATAAAGTTGTCTCTATTGTGGCTGTAGAATTGAGTCACTGATGTTTGCATCAGGACAGACTGCCTAAACATCACATTCTCTTGGGATGCAATCCTTCCTCGGATCCTGTGTGAATGCAGGATTCGAGCAACAATAAAGTTGTCTCTATTGTGGCTATAGAATCAAGCAATTGATGCTTGCGTCAGGATAGACTGCCTACGTATTGCACTCTCTTGGAATGCGATCCTTCCCTGGATCCCGTGTGAGTGCATGATTCGAGCAGCAATAAAGTTGTCTCTATTGTGGCTATAGAATCAGTCACTGATGATTGCGTCAGGATAGACTGTCTACACATATCACACTCTCTCAGGATGTGATCCTTCCCTAGATCCTGCGTGAATGCAGGATGCTTCGTACACTCAAAATATGTAAAAAAAAAAAATTAACCCTTGTATTTGTATTGCAGGTGGTCATTCTTTCTGGAATTGCTTCTGCATCCGTTTTCCTATCAATAATTGCATATGCT</genome_strand>
        <mrna_strand>GGCACCTTACTGGTCTCCTGATACGTTCTCAATACGCTCAAAGCTATTATCCAAAGCAAGCAGGATCAGTGGGATAACTCATGAGGAGACTGATGTTGAGGAACTTGAAATGTTGCTTGAG...................................................................................GCGTACTTTGTGCAAATTGAAAGCACGATGAACAAATTGACAACGGTAAGACAATGAAAAAAACAGGAACCTGGTGCCCTTTACATAGCCAAAATGAAATAATGAACTGATCATTGATAACTCTAATTACATAGTGATACTCGTGTTCCTTTATCCAGCTGCGCGAATATATTGATGACACTGAGGACTATATCAATATTCAG....................................................................................................CTGGACAATCATCGAAATCAGCTGATCCAG...........................................................................................................TTGGAGCTGTTCCTGAGTTCTGGTACAGTTTGTTTGACAGTGTACTCCTTGGTGGCTGCAATATTTGGAATGAATATTCCAGTTCCATGGAAGAAAGACCATGGCTACCTTTTTAAATGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTCATTCTTTCTGGAATTGCTTCTGCATCCGGTTTCCTATCAATAATTGCATATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242801" ref_strand="+" ref_description="SGN-E242801 [cLED-31-J5]">
      <seq>ggcaccttactggtctcctgatacgttctcaatacgctcaaagctattatccaaagcaagcaggatcagtgggataactcatgaggagactgatgttgaggaacttgaaatgttgcttgaggcgtactttgtgcaaattgaaagcacgatgaacaaattgacaacggtaagacaatgaaaaaaacaggaacctggtgccctttacatagccaaaatgaaataatgaactgatcattgataactctaattacatagtgatactcgtgttcctttatccagctgcgcgaatatattgatgacactgaggactatatcaatattcagctggacaatcatcgaaatcagctgatccagttggagctgttcctgagttctggtacagtttgtttgacagtgtactccttggtggctgcaatatttggaatgaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="+" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="30662" stop="31982"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30962" g_stop="31082" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31083" i_stop="31165" i_length="83">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31166" g_stop="31368" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="324" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31369" i_stop="31468" i_length="100">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31469" g_stop="31498" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="354" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31499" i_stop="31605" i_length="107">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.643" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31606" g_stop="31682" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="431" r_length="77" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="+" ref_id="SGN-E242801" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242801" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30962" e_stop="31082"/>
          <exon e_start="31166" e_stop="31368"/>
          <exon e_start="31469" e_stop="31498"/>
          <exon e_start="31606" e_stop="31682"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCACCTTACTGGTCTCCTGATACGTTCTCAATACGCTCAAAGCTATTATCCAAAGCAAGCAGGATCAGTGGGATAACTCATGAGGAGACTGATGTTGAGGAACTTGAAATGTTGCTTGAGGTTAGTATCATCACAAACTTACACACTTTGGCCTAATTAATCCCCGGATACTTGTGTTTTTCAATAACTACATGCTTTTGCAGGCGTACTTTGTGCAAATTGAAAGCACGATGAACAAATTGACAACGGTAAGACAATGAAAAAAACAGGAACCTGGTGCCCTTTACATAGCCAAAATGAAATAATGAACTGATCATTGATAACTCTAATTACATAGTGATACTCGTGTTCCTTTATCCAGCTGCGCGAATATATTGATGACACTGAGGACTATATCAATATTCAGGTTACTACTCCGCGCTGATTCAACTTGTTGTGTGATGCTAAAACCTTGTAGCTTTAGGAACTATACACAAAACTAACAGTAAATTCCTTGTTGCTGGCAGCTGGACAATCATCGAAATCAGCTGATCCAGGTATGTTGAAATGTGTACCATCTTGTTAAATGTATCCTGTATAAGTCTGCTACTTCTCGACTTGTATATAGGCGAATAAATAGCATTTGTTTTGATTGATACCGCAGTTGGAGCTGTTCCTGAGTTCTGGTACAGTTTGTTTGACAGTGTACTCCTTGGTGGCTGCAATATTTGGAATGAATAT</genome_strand>
        <mrna_strand>GGCACCTTACTGGTCTCCTGATACGTTCTCAATACGCTCAAAGCTATTATCCAAAGCAAGCAGGATCAGTGGGATAACTCATGAGGAGACTGATGTTGAGGAACTTGAAATGTTGCTTGAG...................................................................................GCGTACTTTGTGCAAATTGAAAGCACGATGAACAAATTGACAACGGTAAGACAATGAAAAAAACAGGAACCTGGTGCCCTTTACATAGCCAAAATGAAATAATGAACTGATCATTGATAACTCTAATTACATAGTGATACTCGTGTTCCTTTATCCAGCTGCGCGAATATATTGATGACACTGAGGACTATATCAATATTCAG....................................................................................................CTGGACAATCATCGAAATCAGCTGATCCAG...........................................................................................................TTGGAGCTGTTCCTGAGTTCTGGTACAGTTTGTTTGACAGTGTACTCCTTGGTGGCTGCAATATTTGGAATGAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E369429" ref_strand="+" ref_description="SGN-E369429 [TUS-23-K21](-)">
      <seq>tacgctcaaagctattatccaaagcaagcaggatcagtgggataactcatgaggagactgatgttgaggaacttgaaatgttgcttgaggcgtactttgtgcaaattgaaagcacgatgaacaaattgacaacgctgcgcgaatatattgatgacactgaggactatatcaatattcagctggacaatcatcgaaatcagctgatccagttggagctgttcctgagttctggtacagtttgtttgacagtgtactccttggtggctgcaatatttggaatgaatattccagttccatggaagaaagaccatggctacctttttaaatgggtggtcattctttctggaattgcttctgcatccgttttcctatcaataattgcatatgctaggcacaagggtcttgttggatcttaaatcttaatacctattactcctccgatctctatatataaatataaaatacaccagacatgtcaacatgttgaaatttaatttttaaattgtaacttttagaggacgaggcagagccatgattggagataagatatgcaaaaatgttacgatacgaatttatgacctaaaacatgcttgttatgtattgatgaattcaacaatcaatatatatatatatatatatatataaaatctcacataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="+" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="30694" stop="32895"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30994" g_stop="31082" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31083" i_stop="31165" i_length="83">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31166" g_stop="31210" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="134" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31211" i_stop="31323" i_length="113">
            <donor d_prob="0.591" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31324" g_stop="31368" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="179" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31369" i_stop="31468" i_length="100">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31469" g_stop="31498" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="209" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31499" i_stop="31605" i_length="107">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.643" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31606" g_stop="31725" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="329" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="31726" i_stop="32268" i_length="543">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="32269" g_stop="32611" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="672" r_length="343" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="+" ref_id="SGN-E369429" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369429" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30994" e_stop="31082"/>
          <exon e_start="31166" e_stop="31210"/>
          <exon e_start="31324" e_stop="31368"/>
          <exon e_start="31469" e_stop="31498"/>
          <exon e_start="31606" e_stop="31725"/>
          <exon e_start="32269" e_stop="32611"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACGCTCAAAGCTATTATCCAAAGCAAGCAGGATCAGTGGGATAACTCATGAGGAGACTGATGTTGAGGAACTTGAAATGTTGCTTGAGGTTAGTATCATCACAAACTTACACACTTTGGCCTAATTAATCCCCGGATACTTGTGTTTTTCAATAACTACATGCTTTTGCAGGCGTACTTTGTGCAAATTGAAAGCACGATGAACAAATTGACAACGGTAAGACAATGAAAAAAACAGGAACCTGGTGCCCTTTACATAGCCAAAATGAAATAATGAACTGATCATTGATAACTCTAATTACATAGTGATACTCGTGTTCCTTTATCCAGCTGCGCGAATATATTGATGACACTGAGGACTATATCAATATTCAGGTTACTACTCCGCGCTGATTCAACTTGTTGTGTGATGCTAAAACCTTGTAGCTTTAGGAACTATACACAAAACTAACAGTAAATTCCTTGTTGCTGGCAGCTGGACAATCATCGAAATCAGCTGATCCAGGTATGTTGAAATGTGTACCATCTTGTTAAATGTATCCTGTATAAGTCTGCTACTTCTCGACTTGTATATAGGCGAATAAATAGCATTTGTTTTGATTGATACCGCAGTTGGAGCTGTTCCTGAGTTCTGGTACAGTTTGTTTGACAGTGTACTCCTTGGTGGCTGCAATATTTGGAATGAATATTCCAGTTCCATGGAAGAAAGACCATGGCTACCTTTTTAAATGGGTGCGCATACTCGATTCTTTTTCTAGGAGTAGTATATTATTATATCAATTCAAAAGTATATAGAAGTTAAACTCTAGAAGTAAAGCCTCGGAGCAACAATAAAGTTGTCTCTATTGTGGCTGTAGAATTGAGTCACTGATGTTTGCATCAGGACAGACTGCCTAAACATCACATTCTCTTGGGATGCAATCCTTCCTCGGATCCTGTGTGAATGCAGGATTCGAGCAACAATAAAGTTGTCTCTATTGTGGCTATAGAATCAAGCAATTGATGCTTGCGTCAGGATAGACTGCCTACGTATTGCACTCTCTTGGAATGCGATCCTTCCCTGGATCCCGTGTGAGTGCATGATTCGAGCAGCAATAAAGTTGTCTCTATTGTGGCTATAGAATCAGTCACTGATGATTGCGTCAGGATAGACTGTCTACACATATCACACTCTCTCAGGATGTGATCCTTCCCTAGATCCTGCGTGAATGCAGGATGCTTCGTACACTCAAAATATGTAAAAAAAAAAAATTAACCCTTGTATTTGTATTGCAGGTGGTCATTCTTTCTGGAATTGCTTCTGCATCCGTTTTCCTATCAATAATTGCATATGCTAGGCACAAGGGTCTTGTTGGATCTTAAATCTTAATACCTATTACTCCTCCGATCTCTATATATAAATATAAAATACACCAGACATGTCAACATGTTGAAATTTAATTTCTAAATTGTAACTTTTAGAGGACGAGGCAGAGCCATGATTGGAGATAAGATATGCAAAAATGTTACGATACGAATTTATGACCTAAAACATGCTTGTTATGTATTGATGAATTCAACAATCAATATATATATATATATATATATATAAAATCTCACATACGCACAAATGTAATTT</genome_strand>
        <mrna_strand>TACGCTCAAAGCTATTATCCAAAGCAAGCAGGATCAGTGGGATAACTCATGAGGAGACTGATGTTGAGGAACTTGAAATGTTGCTTGAG...................................................................................GCGTACTTTGTGCAAATTGAAAGCACGATGAACAAATTGACAACG.................................................................................................................CTGCGCGAATATATTGATGACACTGAGGACTATATCAATATTCAG....................................................................................................CTGGACAATCATCGAAATCAGCTGATCCAG...........................................................................................................TTGGAGCTGTTCCTGAGTTCTGGTACAGTTTGTTTGACAGTGTACTCCTTGGTGGCTGCAATATTTGGAATGAATATTCCAGTTCCATGGAAGAAAGACCATGGCTACCTTTTTAAATGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTCATTCTTTCTGGAATTGCTTCTGCATCCGTTTTCCTATCAATAATTGCATATGCTAGGCACAAGGGTCTTGTTGGATCTTAAATCTTAATACCTATTACTCCTCCGATCTCTATATATAAATATAAAATACACCAGACATGTCAACATGTTGAAATTTAATTTTTAAATTGTAACTTTTAGAGGACGAGGCAGAGCCATGATTGGAGATAAGATATGCAAAAATGTTACGATACGAATTTATGACCTAAAACATGCTTGTTATGTATTGATGAATTCAACAATCAATATATATATATATATATATATATAAAATCTCACATAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392892" ref_strand="+" ref_description="SGN-E392892 [TUS-36-P10](-)">
      <seq>gttgaggaacttgaaatgttgcttgaggcgtactttgtgcaaattgaaagcacgatgaacaaattgacaacggtaagacaatgaaaaaaacaggaacctggtgccctttacatagccaaaatgaaataatgaactgatcattgataactctaattacatagtgatactcgtgttcctttatccagctgcgcgaatatattgatgacactgaggactatatcaatattcagctggacaatcatcgaaatcagctgatccagttggagctgttcctgagttctggtacagtttgtttgacagtgtactccttggtggctgcaatatttggaatgaatattccagttccatggaagaaagaccatggctacctttttaaatgggtggtcattctttctggaattgcttctgcatccgttttcctatcaataattgcatatgctaggcacaagggtcttgttggatcttaaatcttaatacctattactcctccgatctctatatataaatataaaatacaccagacatgtcaacatgttgaaatttaatttctaaattgtaacttttagaggacgaggcagagccatgattggagataagatatgcaaaaatgttacgatacgaatttatgacctaaaacatacttgttatgtattgatgaattcaacaatcaatatatatatatatatatataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="+" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="30756" stop="32886"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31056" g_stop="31082" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31083" i_stop="31165" i_length="83">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31166" g_stop="31368" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="230" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31369" i_stop="31468" i_length="100">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31469" g_stop="31498" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="260" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31499" i_stop="31605" i_length="107">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.643" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31606" g_stop="31725" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="380" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31726" i_stop="32268" i_length="543">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32269" g_stop="32587" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="699" r_length="319" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="+" ref_id="SGN-E392892" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392892" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31056" e_stop="31082"/>
          <exon e_start="31166" e_stop="31368"/>
          <exon e_start="31469" e_stop="31498"/>
          <exon e_start="31606" e_stop="31725"/>
          <exon e_start="32269" e_stop="32587"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGAGGAACTTGAAATGTTGCTTGAGGTTAGTATCATCACAAACTTACACACTTTGGCCTAATTAATCCCCGGATACTTGTGTTTTTCAATAACTACATGCTTTTGCAGGCGTACTTTGTGCAAATTGAAAGCACGATGAACAAATTGACAACGGTAAGACAATGAAAAAAACAGGAACCTGGTGCCCTTTACATAGCCAAAATGAAATAATGAACTGATCATTGATAACTCTAATTACATAGTGATACTCGTGTTCCTTTATCCAGCTGCGCGAATATATTGATGACACTGAGGACTATATCAATATTCAGGTTACTACTCCGCGCTGATTCAACTTGTTGTGTGATGCTAAAACCTTGTAGCTTTAGGAACTATACACAAAACTAACAGTAAATTCCTTGTTGCTGGCAGCTGGACAATCATCGAAATCAGCTGATCCAGGTATGTTGAAATGTGTACCATCTTGTTAAATGTATCCTGTATAAGTCTGCTACTTCTCGACTTGTATATAGGCGAATAAATAGCATTTGTTTTGATTGATACCGCAGTTGGAGCTGTTCCTGAGTTCTGGTACAGTTTGTTTGACAGTGTACTCCTTGGTGGCTGCAATATTTGGAATGAATATTCCAGTTCCATGGAAGAAAGACCATGGCTACCTTTTTAAATGGGTGCGCATACTCGATTCTTTTTCTAGGAGTAGTATATTATTATATCAATTCAAAAGTATATAGAAGTTAAACTCTAGAAGTAAAGCCTCGGAGCAACAATAAAGTTGTCTCTATTGTGGCTGTAGAATTGAGTCACTGATGTTTGCATCAGGACAGACTGCCTAAACATCACATTCTCTTGGGATGCAATCCTTCCTCGGATCCTGTGTGAATGCAGGATTCGAGCAACAATAAAGTTGTCTCTATTGTGGCTATAGAATCAAGCAATTGATGCTTGCGTCAGGATAGACTGCCTACGTATTGCACTCTCTTGGAATGCGATCCTTCCCTGGATCCCGTGTGAGTGCATGATTCGAGCAGCAATAAAGTTGTCTCTATTGTGGCTATAGAATCAGTCACTGATGATTGCGTCAGGATAGACTGTCTACACATATCACACTCTCTCAGGATGTGATCCTTCCCTAGATCCTGCGTGAATGCAGGATGCTTCGTACACTCAAAATATGTAAAAAAAAAAAATTAACCCTTGTATTTGTATTGCAGGTGGTCATTCTTTCTGGAATTGCTTCTGCATCCGTTTTCCTATCAATAATTGCATATGCTAGGCACAAGGGTCTTGTTGGATCTTAAATCTTAATACCTATTACTCCTCCGATCTCTATATATAAATATAAAATACACCAGACATGTCAACATGTTGAAATTTAATTTCTAAATTGTAACTTTTAGAGGACGAGGCAGAGCCATGATTGGAGATAAGATATGCAAAAATGTTACGATACGAATTTATGACCTAAAACATGCTTGTTATGTATTGATGAATTCAACAATCAATATATATATATATATATATATATAAAAT</genome_strand>
        <mrna_strand>GTTGAGGAACTTGAAATGTTGCTTGAG...................................................................................GCGTACTTTGTGCAAATTGAAAGCACGATGAACAAATTGACAACGGTAAGACAATGAAAAAAACAGGAACCTGGTGCCCTTTACATAGCCAAAATGAAATAATGAACTGATCATTGATAACTCTAATTACATAGTGATACTCGTGTTCCTTTATCCAGCTGCGCGAATATATTGATGACACTGAGGACTATATCAATATTCAG....................................................................................................CTGGACAATCATCGAAATCAGCTGATCCAG...........................................................................................................TTGGAGCTGTTCCTGAGTTCTGGTACAGTTTGTTTGACAGTGTACTCCTTGGTGGCTGCAATATTTGGAATGAATATTCCAGTTCCATGGAAGAAAGACCATGGCTACCTTTTTAAATGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTCATTCTTTCTGGAATTGCTTCTGCATCCGTTTTCCTATCAATAATTGCATATGCTAGGCACAAGGGTCTTGTTGGATCTTAAATCTTAATACCTATTACTCCTCCGATCTCTATATATAAATATAAAATACACCAGACATGTCAACATGTTGAAATTTAATTTCTAAATTGTAACTTTTAGAGGACGAGGCAGAGCCATGATTGGAGATAAGATATGCAAAAATGTTACGATACGAATTTATGACCTAAAACATACTTGTTATGTATTGATGAATTCAACAATCAATATATATATATATATATATAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E621689" ref_strand="+" ref_description="SGN-E621689 [72048]">
      <seq>tcacgatgaacaaattgacaacgttgcgcgaatatattgatgacacagaggactatatcaatattcagctggacaatcatcgaaatcagttgatccagttggagctgttcctgagttctggtacagtttgtttgacagtgtactccttggtggctgcaatatttggaatgaatattccagttccatggaagaaagaccatggctacctttttaaatgggtggtcattcttgctggaattgcttctgcatccgttttcctatcaataattacatatgctaggcacaagggtcttgttggatcttaaattttaataattactcctccaatctctatattataatataaaatacaccctacatgtcaacatgttgaaatttaatttctaaattgtaacttcaatgaagaggtggaaccacgattggagataagatatgcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="+" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="30889" stop="118554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31188" g_stop="31210" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31211" i_stop="31323" i_length="113">
            <donor d_prob="0.591" d_score="0.00"/>
            <acceptor a_prob="0.973" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31324" g_stop="31368" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="68" r_length="45" r_score="0.956"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31369" i_stop="31468" i_length="100">
            <donor d_prob="0.974" d_score="0.96"/>
            <acceptor a_prob="0.978" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31469" g_stop="31498" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="98" r_length="30" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31499" i_stop="31605" i_length="107">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.643" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31606" g_stop="31725" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="218" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31726" i_stop="32268" i_length="543">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32269" g_stop="32497" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="442" r_length="224" r_score="0.904"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="32498" i_stop="34727" i_length="2230">
            <donor d_prob="0.592" d_score="0.80"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="34728" g_stop="34765" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="480" r_length="38" r_score="0.737"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="34766" i_stop="34883" i_length="118">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="34884" g_stop="34912" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="509" r_length="29" r_score="0.724"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="+" ref_id="SGN-E621689" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E621689" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31188" e_stop="31210"/>
          <exon e_start="31324" e_stop="31368"/>
          <exon e_start="31469" e_stop="31498"/>
          <exon e_start="31606" e_stop="31725"/>
          <exon e_start="32269" e_stop="32497"/>
          <exon e_start="34728" e_stop="34765"/>
          <exon e_start="34884" e_stop="34912"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACGATGAACAAATTGACAACGGTAAGACAATGAAAAAAACAGGAACCTGGTGCCCTTTACATAGCCAAAATGAAATAATGAACTGATCATTGATAACTCTAATTACATAGTGATACTCGTGTTCCTTTATCCAGCTGCGCGAATATATTGATGACACTGAGGACTATATCAATATTCAGGTTACTACTCCGCGCTGATTCAACTTGTTGTGTGATGCTAAAACCTTGTAGCTTTAGGAACTATACACAAAACTAACAGTAAATTCCTTGTTGCTGGCAGCTGGACAATCATCGAAATCAGCTGATCCAGGTATGTTGAAATGTGTACCATCTTGTTAAATGTATCCTGTATAAGTCTGCTACTTCTCGACTTGTATATAGGCGAATAAATAGCATTTGTTTTGATTGATACCGCAGTTGGAGCTGTTCCTGAGTTCTGGTACAGTTTGTTTGACAGTGTACTCCTTGGTGGCTGCAATATTTGGAATGAATATTCCAGTTCCATGGAAGAAAGACCATGGCTACCTTTTTAAATGGGTGCGCATACTCGATTCTTTTTCTAGGAGTAGTATATTATTATATCAATTCAAAAGTATATAGAAGTTAAACTCTAGAAGTAAAGCCTCGGAGCAACAATAAAGTTGTCTCTATTGTGGCTGTAGAATTGAGTCACTGATGTTTGCATCAGGACAGACTGCCTAAACATCACATTCTCTTGGGATGCAATCCTTCCTCGGATCCTGTGTGAATGCAGGATTCGAGCAACAATAAAGTTGTCTCTATTGTGGCTATAGAATCAAGCAATTGATGCTTGCGTCAGGATAGACTGCCTACGTATTGCACTCTCTTGGAATGCGATCCTTCCCTGGATCCCGTGTGAGTGCATGATTCGAGCAGCAATAAAGTTGTCTCTATTGTGGCTATAGAATCAGTCACTGATGATTGCGTCAGGATAGACTGTCTACACATATCACACTCTCTCAGGATGTGATCCTTCCCTAGATCCTGCGTGAATGCAGGATGCTTCGTACACTCAAAATATGTAAAAAAAAAAAATTAACCCTTGTATTTGTATTGCAGGTGGTCATTCTTTCTGGAATTGCTTCTGCATCCGTTTTCCTATCAATAATTGCATATGCTAGGCACAAGGGTCTTGTTGGATCTTAAATCTTAATACCTATTACTCCTCCGATCTCTATATATAAATATAAAATACACCAGACATGTCAACATGTTGAAATTTAATTTCTAAATTGTAACTTTTAGAGGACGAGGCAGAGCCATGATTGGAGATAAGATATGCAAAAATGTTACGATACGAATTTATGACCTAAAACATGCTTGTTATGTATTGATGAATTCAACAATCAATATATATATATATATATATATATAAAATCTCACATACGCACAAATGTAATTTGTTGACAAGCGGATTTAATTGACCACCCTTTGCGCTAATATGACTTCTTACTGGTTGCAAATCAATCAAAAGTTTCAACAACAATAGAAAAAGAGAGAATTTAAGGATGGTCTACAAGCTACAACAATTTCTTTTGTAAAATTCAGAGTTTGCTCCACCTATATTCTTGATTCTCAAAGGGGATATATATACGAGTCCGAAGTCTAAAGGGGCAAAAAAAATAAACAAAAATTTCAAAAGGATATATCAAAAAAAATTTCTAACCAAAACGGTAAAATCGCTACTGATGTAGCGATTCATTTGGCCGGCGATACAAAAAATCCCTGCTCTACAAGCGATTTGTACAATTTTTATTTTAAGTTTATTTTTTAACAAATTGCTGTCAAGGCAGCGATTTTTAAGTGAAATTTGTTTTTTTATATTATGAATTGTAAATCGTTGAGGTGGCAGCAATTTACAATTGTTTTTTTAATTTTTTTTTTACAAATCGCTGACAAGGCAGCAATTTTAAATTAAAAATAAAAATTGTACAAATCGCTCGTCGAGCAGCGATTTTTCCAAACGCCGGCCAAATAAATCGCTACATCAATAACGATTTTACCGTTTTGGTTAGAAAGTTTTTTGATATACCCTTTTAAAATTTTTGTCAATTCCTTTTACCGTTTAGACTCCGAATTTCTATATACACATAAATAAACTATATATATTAAAGAGAATAATACACAAAAAAAAATAACTTTTAACTCAAAATTCAAATTTGAACTATTTGCGATTTGTTATCTAACTATAAAGAAAATAACCAGTGACAAATAAGAGTGAAAGTACTTGTTAGATGTATGTTAAAATGTTTAAAAACCAAATGGTAGCAGTAGCACAAAAGAAATTGAAAATAAAATTACAAGGACTACAAATTTGTTGTGTGGCTGGCACAAGCTGACACTTTATGGCAGGGAGACTCCGTTTAATGTCATAAAGAGAATTGTTAGGCGTTTGGCCATGTGATATCATATCACGATATGGTATTGTGAAATGGAATTAGCGTTTGGACATGCAATTTCACGCTGATTCCATCTCACAATATGGAATCATAAGATGTGATTTCATATTCTCCAAAAATCATGATATGGAATTACATGGTGATTCCATATCATGATTTGAGATATTTTAATACAAAAATTGATCCACGAGTTTATATTTTGTTAAAACAATCCACATTTATATCTACTAACTATTTATTTCATATGTAAATAAAATTTATAATCACATCATTACTTTTTAAAATTTATTATTCTCACCGACATAAATTTATTATTCTAACGAACATATAGTCACTTTAATTCACACCAACCTATTGTCAAAGTGATGAAGTATTTATGGTCTATAAACATGAAAAGATAGTTGCGGATGATATTGACCAACAAACGGCTCAAAGTAACTATGTTAGTTCGTCTTCTCAGTCACATTATCGAGAAATGCAAGTTTAACTTGAGGAAATTATTCGTACTATGTGGGAGGATTATATTAAAAACTAGTACACTATAATTTATGTTCAAGTTTTTTATTAAATTATAACTTTAATGAAACGATTACTTAAGTGGAGAACAAAATACCTTTTAATAATTTATTATGCGATTTTATAATTTTTTTATTTGATAAGATTGAATAAAAAATTGGGGCTATTTTAATAATTTTACAACTTATGGAATTTTTATGTTTATGAGAAAATATACAACACAAAAACTCCATATTGCATGTCCAAACAAAACTTCAATTTCAATCTTATAATTCTTTATCATGATACTATGTTGCATGGCCAAACAACCCTTTTTAGTACATATCATTGAAATTTGAAACTTCAATAAAATTACTCCCTTCCCATTTTATATATCGTTCCTTTCTAAATATAGTTGGACCACAATATATGTTATTTTATAAAATTAATGCATAAATTATCATTTTTGCCCATTATACTCTTGATATAATTAAATTAATCTTGAAAATGTATTTACTTTGACTAACCTAGGAAATCTACAAGTAATTAATTTCATTGGTAAAGTACTTCATTCATTAAGAAAATACTTTATTCATTATTTATTTTATGAAATCTGCTTTTGACAAAAATATTAACAAACAAATTAAAAATAAAAGATAAAAATGGAGTTTATAACCACATGAATCATCTCTAATGTAGTTAAATATGAATCAATGATCTTAATGATTCTTTGTTTACGTTGTTATTATTTAAGTTTCCATCTGTTATTTGTTAAAAAAGAAAAAAAAATTATGAAAACAAAAGATAAA</genome_strand>
        <mrna_strand>TCACGATGAACAAATTGACAACG.................................................................................................................TTGCGCGAATATATTGATGACACAGAGGACTATATCAATATTCAG....................................................................................................CTGGACAATCATCGAAATCAGTTGATCCAG...........................................................................................................TTGGAGCTGTTCCTGAGTTCTGGTACAGTTTGTTTGACAGTGTACTCCTTGGTGGCTGCAATATTTGGAATGAATATTCCAGTTCCATGGAAGAAAGACCATGGCTACCTTTTTAAATGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTCATTCTTGCTGGAATTGCTTCTGCATCCGTTTTCCTATCAATAATTACATATGCTAGGCACAAGGGTCTTGTTGGATCTTAAATTTTAATA---ATTACTCCTCCAATCTCTATATTATAATATAAAATACACCCTACATGTCAACATGTTGAAATTTAATTTCTAAATTGTAAC-TTCA-ATGAAGAGGTGGAACCACGATTGGAGATAAGATATGCAAAAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA......................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E585641" ref_strand="+" ref_description="SGN-E585641 [68103]">
      <seq>taatatatcgtagttctacacacgagctgaaaggttctctttttttgcttctccctcaattgacatgggaacacgagaggtatacgaagaaaaattgaagagagggaatctgcatcatgatccaacaattaaacccggtctcggctctgctagatgtcctcgttgtctttctctcttgaactccaattcaaaaagtggagaatgggcgattactcctgttctacatgatttcacggctgtggctggctctggaattggtggactgctcagtgcaattcatggtttcaatacaggaattccttttgtccagagacgcgtgaaaggtccaaagtggcttccatttgttatagggcttcctccactactcatgttctctgcagctagcgcaacatttggaggatatgcacttccaaggtttactcaacttacgatgacttcatattacactgcttcaagtgcctcacattacggaatatcattgcttaccagacgtattgagaaggcccatacttctggtgttcaacctaaaagactcggctgattgacttgaggttgcaagagtgtggggttgaaaagagaattttatggcctgacttgcacaacatgttttggaccaagtaattttgacgctaagggcattactgatttgaagttattaacggaggggaaaatatgcttattttgcataatatgagggtataattgggacgatttcggaaccatatattgtatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="+" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="35179" stop="40480"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35416" g_stop="35614" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="190" r_length="190" r_score="0.879"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35615" i_stop="35725" i_length="111">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35726" g_stop="35776" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="241" r_length="51" r_score="0.922"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35777" i_stop="36936" i_length="1160">
            <donor d_prob="0.639" d_score="0.92"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36937" g_stop="36988" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="293" r_length="52" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36989" i_stop="37144" i_length="156">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37145" g_stop="37203" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="352" r_length="59" r_score="0.949"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="37204" i_stop="37367" i_length="164">
            <donor d_prob="0.915" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="37368" g_stop="37413" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="398" r_length="46" r_score="0.957"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="37414" i_stop="39468" i_length="2055">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.714" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="39469" g_stop="39617" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="546" r_length="148" r_score="0.946"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="39618" i_stop="40045" i_length="428">
            <donor d_prob="0.987" d_score="0.88"/>
            <acceptor a_prob="0.000" a_score="0.80"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="40046" g_stop="40175" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="679" r_length="133" r_score="0.831"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="+" ref_id="SGN-E585641" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E585641" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35416" e_stop="35614"/>
          <exon e_start="35726" e_stop="35776"/>
          <exon e_start="36937" e_stop="36988"/>
          <exon e_start="37145" e_stop="37203"/>
          <exon e_start="37368" e_stop="37413"/>
          <exon e_start="39469" e_stop="39617"/>
          <exon e_start="40046" e_stop="40175"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATATATAACAGTAGTTCTACACACAAGCTGAAAGGTTCTTTTTTTTTTTTATTTGCTTTGTTCTCAATTGAGATGGGAACACGAGAGGTATACGAAGAAAAGCTGAAGAGAGGGAATCTCCATCATGATCCTACAATCAAACCTGGCCTCGGCTCTGCTAGATGTCCTCGTTGTCTTTCTCTCTTGAACTCCAATTCAGTGTGTATCATATTCTACTAATTTAATTTTTTTTTGTAATTGTCCACATCTTGTCTAGTACATGCTTGATGAAATGCCTAACTAGTAGTTTGAATTTGATTTCGGTTGCAGAAAAATGGAGAATGGGCGATTACTCCTGTTCTACATGATTTCACAATTGTGGTTAGTATGCTATATTACATGTTTCGAATGGTATTTGAACTGCGAGATCGAAGTAGCTAAATTTGTTGTTATGGTTAAAATTTACCTAAGTAGTCACAAATTTTAAGAATTGAATGGTGTTGGTATTTGTGGTCAAAGTCCCACTTTGGTAGTTGAAAATAAAAAGTAAGCTACTAATTATAAGTGTTGGTTATATTAGGAGTCGTTTAGTGCGAGAGATAACGTATACTAATCTTAGGGATAAAATGAGGGATTATTTTATCATGCGATTGGTTAGAGATATTAGGCCGTCTTCAAATTATTTATCCCATCATTTAGACCTTAGTGATGGGATAAGTTCATATACACGGTGGAATAACTTATATCCCGATGATTAATTTCGGTATAACTTGTTCTCAACCAAGTGACCCCTTAATAGTATGAGGCCCTTTAGGGAAACTGTACATGCTTGTCCCAAAGCAGACAATATCACACATGTTAAGTGTATCTTTCAGCTGTTTAACCTAATGACTGCGAGATGAGTAAGGAGATGACATAGTGATGTTGTGGGGACCAACTCTGAATTAGCCCACGAATGCAATGGATCATGTGGAACTTAGTTAGTGGGGGAATTGTTATGTGTGCGTAAACAAAGTCCATACTGGTAACTAAAAAAAAACATAAGTTACTTATAAGCTGTTGAATCCTCTTGAGATTGGTAACCTAGCCCAAAACCATAGTCATGGAAAAAAGTATGGGGATAGTCTTAATGGCGTGAGGCCTTTTGGGAAATTGTGCAGGCTTGGACCAAACCACAAGATCATACCATGTTGATACTGAAAGTGGTTGATGCCGAAGAGTTATATGAATGTTTTGTATATGTCCAAAACTTCAAGATTTTGTTTTATAGTAAATTGGAATTGGGCTTCGTTGAGTTCTATGCAGAAGAAAGTTTCTATTGTGACCCCTGAAAAAGTTCCGTTTTTGAATGTCTTCCACTTGAAAATCTGAAAGACTATCTTTTACCCGAAGCCGAATATTTTACCCTTGTCTTACTAATCATAATTTTTATATTCGGTTGGACAAGGCTAATAAACCTATAGTGAACAGAGTTATAGCGCAACCATAATATGAAGAGCTTTTACCAACTAGTGAAAGTAATATTCTTTACCTTTGTGTAGGCTGGCTCTGGAATTGGTGGACTGCTCAGTGTAATTCATGGTTTCAATACAGGCATGATTAATTAATCATCTCTTATGTGCTTATCTTTGTTTTCTTTTTTGTATTACTCTCCTTATAGTAAATCATGGTTGAAATATCAAACTTAATACTTCCTTCTCTTTTATCTAATGAATTCATAGTTGAAGTCTTAATGCTAATACTTTTCAGGAATTCCTTTTGTCCAGAGACATGTGAAGGGTCCAAAGTGGCTTCCATTTGTTATAGGGGTAGGCATTAAATCCATTTTTCTGATCTTAAAGTCTTTTCTTCCTCTCTTCCTCCTATTCATTGTATTCTTGATTTTTGTGTTGTACTCAAATCTATGTATAATTGAGTATACAATTGATGTGTTATCTAAAACTTCACTTTTCCCCTTGTTTTGTTCTTGCAGCTTCCTCCACTACTCATGTTCTCTGCAGCTAGCGCGACATTTGGTGGTAATTCTATGTTCTAATTTCATTCTAATCTTCATTCTTTCAATTTAGCATGTGTTATGTTATGAATTGATAATAAAGTTACCATGACACTCAGCATATTAATCTTTTTTTTAAGTAACCCTCTGTAACAATACTTTTCTATGCACCAATACTTAAAAGTTGGTAATTTGAAGTTTAATGCAATAATTGCTTGCTAGAATTTATATTGGTATTTCTGTTTTAGTTTACTTTCTCTATCTTAATATAATTGGATATCACTTTATCCCATCAGTATTTTGAGTATTTAAGAAAACCTAATGTTAATCTTTCCGTTTTACGCAAGTATATAATTGTTGGTGATATTTTCACTCCTTGCTTATCTACTTCTAATGAACATTGCTTTCAACTATATACTATAAGAAATCAGAATTTATAATGGATATGAAAAGAATGCTGTAATCAAGAAGACATATCTTGATCAAGTGAGAAACTAACTACCACATATATCAGATATAACCCCTCTAATGTTGTTCTGGCGTATTTTAAAGGTGTACCTTAATCGACCAAATAAGGTAATTCTGGTAATAATACAATGTGGGCTCAGCACGGTGCATTTTATTTCATTTTTGAACGACTGATGTTGAAACCTCACTTTGTAATAGAGGTAAGGTCTATCGGAAACAGTCTCTCTATCTTGAGGTAAAGGTAAGGTTTGCATACACTACATCCTCCACAGATCCAATTTAACTTTGTGGGACTACACTGGGAATGTTGTTGTGATGAGTATGATCGATGTCTAAACCAACACTAAGAAATGGCTATGACACTTGATGGAAAAATAGACGAGCCTCACCTGGAAATAATTCTCGAAGAGAAGAAAAGGTTACATCACACCTGTAGCTTCCGGTGGCCATGTGGTTGACAAGTTCATTCTCAAATCATGTGAACTAAGTAGCCACAAATATTGCAATCTATGCACATAATAAAATTAAGCATCTTTTCCTTCCTTACAGCTCAATGTCATAATAAAATTGCACATGTTCTGGTACCCGTATTTTGTTGAATGTATGTCATATATTCGAAATTGTTTGTTTCAGATCATTGTTGAGCAAGCTTTCTGTTATGCTTAGGTTAATTATCTTCTTCAAGATATGAGCATCTTATTGTTACGATAAGAAATGTTGAACACTTGAATAAGAGGTGTGGCCAGTGAACAATAGTGTCATGCCACGCACAATCAAGGATCCGAAGATTCAAATACTTCTAAATTTGGAGAATTGTAGACATAACTGACTTTACTGGACTTAGTATTTTTATTTATCGCTTTGTCGTACTTATTCTTGGTACCAAGTTTAAACAACATACATAGAAGGTCTAAATATACCCTTATACTAATCAAAATTGAGCAGATTTTTGCCCTATGTTAGTACTTTAGTTCATATATGCCCTTACCGTCAAATACTTGGTCTAAATACTATGCGCAATTGAGCAGAATAAGGGCGTATTTGGATCAAGTATTTGATGCTAAGGGCTTAAGTAAATTGAAGTATAAACGGAGGAATAATATGCTCAATTTCATATGGTATGAGGGTATAGTTGAACCTTTCCAGAACAATAGATTGTATCTAGGGGTTTAGTTAGCTCATAGGGCTGACGCTTGTACTCTGCAGCAGATACGTGAATTAGCCTGCTGAACTAGTCTTGCTTAGGGTGGGTGAAGAAGGGTATCCAATTGAAATCCATGCGCTTCTTTTTCTATTTTTCTCTTAGATGTGCTCGGCACCGAATGCCTGAAGATTGGTTGAAAAGGCAGGCCTAACCGACCCTCTACTCCTACTTGTCCCAAAGAAATGTTTCTTCACTTTATTTTTCAAAACTAGAATAAATTAGGCTCTTTACAATATTTTGAAGGAATAATTCATGGGAAAGTGCCATTTAAAGGAAAATAAAGTAGCCACTCATTCTTACACTCGTTCGAAAGTACTTTAATGACAATAATCAAAGATCTTTTTCATGCTTTAATCTTAATTATGAAAGTAATTTTTGATGTGTAAATGACCAGATTTTCCATTACAGGATATACACTTCCAAGGTTTACTCAACTTACGATGACTTCATATTACACTGCTTCAAGTGCTTCACATTACGGAATATCATTGCTTACCAGACGTATTGAGGAGACCCATACTTCTGGTGTTCAACCTAAAAAACTCAGCTGACTTGAGGTGCACAAAATCAGAGCCAAACTTTACTTCAAATTTTGCAATATATTATATATAGTTGGAGCAATTGTCAATTCAAAAGATGCATGTTCATTGCTTTGGTGACTTCTCTTTTGATAAAATATATAGTTTTTACTTTGTAATAATAGGAATGTTTGAACTTGGAAGAAAACACTTGAGCATCTGTCAAAACTGGATCTTGTATCTAAGTGCTTTGTATTAGAACAAAATGCTTAGTCATTGTTTTTAAATTGATACATCCTCATCGGTGCTAACTGCGACTAAATAACCCTTTAATTTCTTTTGTAAGTCGAGAGTTTTCTACCCCACAAAGGTACAGGTAAGATGTGCATACTTCCTACCTTCAGACTCGACTTGTGGAATTACACTAGATATGTTGTAGTCACTTTTCTATTACTAACTTTATATCTTTGAAGATTCTTGGAGTGTGGGGTTAAAGAGGGAATTTTATGGCCCGACTTGCACAACATGTTTTGGACCAAGT-A-TTTGACACTAAGGGCATTAGTGATTTGAAGT-ATTAACAGA-GGGAAAATATGCATA</genome_strand>
        <mrna_strand>TA-ATATATC-GTAGTTCTACACACGAGCTGAAAGGTTC-----TCTTT-T-TTTGCTTCTCCCTCAATTGACATGGGAACACGAGAGGTATACGAAGAAAAATTGAAGAGAGGGAATCTGCATCATGATCCAACAATTAAACCCGGTCTCGGCTCTGCTAGATGTCCTCGTTGTCTTTCTCTCTTGAACTCCAATTCA...............................................................................................................AAAAGTGGAGAATGGGCGATTACTCCTGTTCTACATGATTTCACGGCTGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGCTCTGGAATTGGTGGACTGCTCAGTGCAATTCATGGTTTCAATACAG............................................................................................................................................................GAATTCCTTTTGTCCAGAGACGCGTGAAAGGTCCAAAGTGGCTTCCATTTGTTATAGGG....................................................................................................................................................................CTTCCTCCACTACTCATGTTCTCTGCAGCTAGCGCAACATTTGGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATGCACTTCCAAGGTTTACTCAACTTACGATGACTTCATATTACACTGCTTCAAGTGCCTCACATTACGGAATATCATTGCTTACCAGACGTATTGAGAAGGCCCATACTTCTGGTGTTCAACCTAAAAGACTCGGCTGA-TTGAC............................................................................................................................................................................................................................................................................................................................................................................................................................................TTG-AGGTTGCAAGAGTGTGGGGTTGAAAAGAGAATTTTATGGCCTGACTTGCACAACATGTTTTGGACCAAGTAATTTTGACGCTAAGGGCATTACTGATTTGAAGTTATTAACGGAGGGGAAAATATGCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E285238" ref_strand="+" ref_description="SGN-E285238 [cLER-20-F18]">
      <seq>aaaaattgaagagagggaatctctatcatgatcctacaatcaaacctggcctcggttctgctagatgtcctcgttgtctttctctcttgaactccaattcaaaaagtggagaatgggtgattactcctgttctacatgatttcacggctgtggctggctctggaattggtggactgctcagtgcaattcatggtttcaatacaggaattccttttgtccagagacacgtgaagggtccaaagtggcttccatttgttatagggcttcctccactactcatgttctctgcagctagcgcgacatttggaggatatgcacttccaagatttactcaacttacgatgacttcgtattacactgcttcaagtgcctcacattacggaatatcattgcttaccagacgtattgaggaggcacatacttctggtgttcaacctaaaagactcagctgattgacttgaggtgcacaaaatcagagccaaactttacttcaaattttgcaacgaatcgtatatagttggagcaattgtcaattcaaaaaagccatgttcattgctttggtgacttctcttttgataaaatatatagtttttactttgtaattagaggaatgtttgaacttggaagaaaatatgcttaatttctcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="+" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="35214" stop="40088"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35514" g_stop="35614" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35615" i_stop="35725" i_length="111">
            <donor d_prob="0.936" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35726" g_stop="35776" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="152" r_length="51" r_score="0.902"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35777" i_stop="36936" i_length="1160">
            <donor d_prob="0.639" d_score="0.90"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36937" g_stop="36988" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="204" r_length="52" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36989" i_stop="37144" i_length="156">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37145" g_stop="37203" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="263" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="37204" i_stop="37367" i_length="164">
            <donor d_prob="0.915" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="37368" g_stop="37413" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="309" r_length="46" r_score="0.978"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="37414" i_stop="39468" i_length="2055">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.714" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="39469" g_stop="39786" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="631" r_length="322" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="647" polyA_stop="656"/>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="+" ref_id="SGN-E285238" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285238" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35514" e_stop="35614"/>
          <exon e_start="35726" e_stop="35776"/>
          <exon e_start="36937" e_stop="36988"/>
          <exon e_start="37145" e_stop="37203"/>
          <exon e_start="37368" e_stop="37413"/>
          <exon e_start="39469" e_stop="39786"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGCTGAAGAGAGGGAATCTCCATCATGATCCTACAATCAAACCTGGCCTCGGCTCTGCTAGATGTCCTCGTTGTCTTTCTCTCTTGAACTCCAATTCAGTGTGTATCATATTCTACTAATTTAATTTTTTTTTGTAATTGTCCACATCTTGTCTAGTACATGCTTGATGAAATGCCTAACTAGTAGTTTGAATTTGATTTCGGTTGCAGAAAAATGGAGAATGGGCGATTACTCCTGTTCTACATGATTTCACAATTGTGGTTAGTATGCTATATTACATGTTTCGAATGGTATTTGAACTGCGAGATCGAAGTAGCTAAATTTGTTGTTATGGTTAAAATTTACCTAAGTAGTCACAAATTTTAAGAATTGAATGGTGTTGGTATTTGTGGTCAAAGTCCCACTTTGGTAGTTGAAAATAAAAAGTAAGCTACTAATTATAAGTGTTGGTTATATTAGGAGTCGTTTAGTGCGAGAGATAACGTATACTAATCTTAGGGATAAAATGAGGGATTATTTTATCATGCGATTGGTTAGAGATATTAGGCCGTCTTCAAATTATTTATCCCATCATTTAGACCTTAGTGATGGGATAAGTTCATATACACGGTGGAATAACTTATATCCCGATGATTAATTTCGGTATAACTTGTTCTCAACCAAGTGACCCCTTAATAGTATGAGGCCCTTTAGGGAAACTGTACATGCTTGTCCCAAAGCAGACAATATCACACATGTTAAGTGTATCTTTCAGCTGTTTAACCTAATGACTGCGAGATGAGTAAGGAGATGACATAGTGATGTTGTGGGGACCAACTCTGAATTAGCCCACGAATGCAATGGATCATGTGGAACTTAGTTAGTGGGGGAATTGTTATGTGTGCGTAAACAAAGTCCATACTGGTAACTAAAAAAAAACATAAGTTACTTATAAGCTGTTGAATCCTCTTGAGATTGGTAACCTAGCCCAAAACCATAGTCATGGAAAAAAGTATGGGGATAGTCTTAATGGCGTGAGGCCTTTTGGGAAATTGTGCAGGCTTGGACCAAACCACAAGATCATACCATGTTGATACTGAAAGTGGTTGATGCCGAAGAGTTATATGAATGTTTTGTATATGTCCAAAACTTCAAGATTTTGTTTTATAGTAAATTGGAATTGGGCTTCGTTGAGTTCTATGCAGAAGAAAGTTTCTATTGTGACCCCTGAAAAAGTTCCGTTTTTGAATGTCTTCCACTTGAAAATCTGAAAGACTATCTTTTACCCGAAGCCGAATATTTTACCCTTGTCTTACTAATCATAATTTTTATATTCGGTTGGACAAGGCTAATAAACCTATAGTGAACAGAGTTATAGCGCAACCATAATATGAAGAGCTTTTACCAACTAGTGAAAGTAATATTCTTTACCTTTGTGTAGGCTGGCTCTGGAATTGGTGGACTGCTCAGTGTAATTCATGGTTTCAATACAGGCATGATTAATTAATCATCTCTTATGTGCTTATCTTTGTTTTCTTTTTTGTATTACTCTCCTTATAGTAAATCATGGTTGAAATATCAAACTTAATACTTCCTTCTCTTTTATCTAATGAATTCATAGTTGAAGTCTTAATGCTAATACTTTTCAGGAATTCCTTTTGTCCAGAGACATGTGAAGGGTCCAAAGTGGCTTCCATTTGTTATAGGGGTAGGCATTAAATCCATTTTTCTGATCTTAAAGTCTTTTCTTCCTCTCTTCCTCCTATTCATTGTATTCTTGATTTTTGTGTTGTACTCAAATCTATGTATAATTGAGTATACAATTGATGTGTTATCTAAAACTTCACTTTTCCCCTTGTTTTGTTCTTGCAGCTTCCTCCACTACTCATGTTCTCTGCAGCTAGCGCGACATTTGGTGGTAATTCTATGTTCTAATTTCATTCTAATCTTCATTCTTTCAATTTAGCATGTGTTATGTTATGAATTGATAATAAAGTTACCATGACACTCAGCATATTAATCTTTTTTTTAAGTAACCCTCTGTAACAATACTTTTCTATGCACCAATACTTAAAAGTTGGTAATTTGAAGTTTAATGCAATAATTGCTTGCTAGAATTTATATTGGTATTTCTGTTTTAGTTTACTTTCTCTATCTTAATATAATTGGATATCACTTTATCCCATCAGTATTTTGAGTATTTAAGAAAACCTAATGTTAATCTTTCCGTTTTACGCAAGTATATAATTGTTGGTGATATTTTCACTCCTTGCTTATCTACTTCTAATGAACATTGCTTTCAACTATATACTATAAGAAATCAGAATTTATAATGGATATGAAAAGAATGCTGTAATCAAGAAGACATATCTTGATCAAGTGAGAAACTAACTACCACATATATCAGATATAACCCCTCTAATGTTGTTCTGGCGTATTTTAAAGGTGTACCTTAATCGACCAAATAAGGTAATTCTGGTAATAATACAATGTGGGCTCAGCACGGTGCATTTTATTTCATTTTTGAACGACTGATGTTGAAACCTCACTTTGTAATAGAGGTAAGGTCTATCGGAAACAGTCTCTCTATCTTGAGGTAAAGGTAAGGTTTGCATACACTACATCCTCCACAGATCCAATTTAACTTTGTGGGACTACACTGGGAATGTTGTTGTGATGAGTATGATCGATGTCTAAACCAACACTAAGAAATGGCTATGACACTTGATGGAAAAATAGACGAGCCTCACCTGGAAATAATTCTCGAAGAGAAGAAAAGGTTACATCACACCTGTAGCTTCCGGTGGCCATGTGGTTGACAAGTTCATTCTCAAATCATGTGAACTAAGTAGCCACAAATATTGCAATCTATGCACATAATAAAATTAAGCATCTTTTCCTTCCTTACAGCTCAATGTCATAATAAAATTGCACATGTTCTGGTACCCGTATTTTGTTGAATGTATGTCATATATTCGAAATTGTTTGTTTCAGATCATTGTTGAGCAAGCTTTCTGTTATGCTTAGGTTAATTATCTTCTTCAAGATATGAGCATCTTATTGTTACGATAAGAAATGTTGAACACTTGAATAAGAGGTGTGGCCAGTGAACAATAGTGTCATGCCACGCACAATCAAGGATCCGAAGATTCAAATACTTCTAAATTTGGAGAATTGTAGACATAACTGACTTTACTGGACTTAGTATTTTTATTTATCGCTTTGTCGTACTTATTCTTGGTACCAAGTTTAAACAACATACATAGAAGGTCTAAATATACCCTTATACTAATCAAAATTGAGCAGATTTTTGCCCTATGTTAGTACTTTAGTTCATATATGCCCTTACCGTCAAATACTTGGTCTAAATACTATGCGCAATTGAGCAGAATAAGGGCGTATTTGGATCAAGTATTTGATGCTAAGGGCTTAAGTAAATTGAAGTATAAACGGAGGAATAATATGCTCAATTTCATATGGTATGAGGGTATAGTTGAACCTTTCCAGAACAATAGATTGTATCTAGGGGTTTAGTTAGCTCATAGGGCTGACGCTTGTACTCTGCAGCAGATACGTGAATTAGCCTGCTGAACTAGTCTTGCTTAGGGTGGGTGAAGAAGGGTATCCAATTGAAATCCATGCGCTTCTTTTTCTATTTTTCTCTTAGATGTGCTCGGCACCGAATGCCTGAAGATTGGTTGAAAAGGCAGGCCTAACCGACCCTCTACTCCTACTTGTCCCAAAGAAATGTTTCTTCACTTTATTTTTCAAAACTAGAATAAATTAGGCTCTTTACAATATTTTGAAGGAATAATTCATGGGAAAGTGCCATTTAAAGGAAAATAAAGTAGCCACTCATTCTTACACTCGTTCGAAAGTACTTTAATGACAATAATCAAAGATCTTTTTCATGCTTTAATCTTAATTATGAAAGTAATTTTTGATGTGTAAATGACCAGATTTTCCATTACAGGATATACACTTCCAAGGTTTACTCAACTTACGATGACTTCATATTACACTGCTTCAAGTGCTTCACATTACGGAATATCATTGCTTACCAGACGTATTGAGGAGACCCATACTTCTGGTGTTCAACCTAAAAAACTCAGC----TGACTTGAGGTGCACAAAATCAGAGCCAAACTTTACTTCAAATTTTGCAATATATTATATATAGTTGGAGCAATTGTCAATTCAAAAGATGCATGTTCATTGCTTTGGTGACTTCTCTTTTGATAAAATATATAGTTTTTACTTTGTAATAATAGGAATGTTTGAACTTGGAAGAAAA</genome_strand>
        <mrna_strand>AAAAATTGAAGAGAGGGAATCTCTATCATGATCCTACAATCAAACCTGGCCTCGGTTCTGCTAGATGTCCTCGTTGTCTTTCTCTCTTGAACTCCAATTCA...............................................................................................................AAAAGTGGAGAATGGGTGATTACTCCTGTTCTACATGATTTCACGGCTGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGCTCTGGAATTGGTGGACTGCTCAGTGCAATTCATGGTTTCAATACAG............................................................................................................................................................GAATTCCTTTTGTCCAGAGACACGTGAAGGGTCCAAAGTGGCTTCCATTTGTTATAGGG....................................................................................................................................................................CTTCCTCCACTACTCATGTTCTCTGCAGCTAGCGCGACATTTGGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATGCACTTCCAAGATTTACTCAACTTACGATGACTTCGTATTACACTGCTTCAAGTGCCTCACATTACGGAATATCATTGCTTACCAGACGTATTGAGGAGGCACATACTTCTGGTGTTCAACCTAAAAGACTCAGCTGATTGACTTGAGGTGCACAAAATCAGAGCCAAACTTTACTTCAAATTTTGCAACGAATCGTATATAGTTGGAGCAATTGTCAATTCAAAAAAGCCATGTTCATTGCTTTGGTGACTTCTCTTTTGATAAAATATATAGTTTTTACTTTGTAATTAGAGGAATGTTTGAACTTGGAAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E697780" ref_strand="+" ref_description="SGN-E697780 [FA04BA05]">
      <seq>cgagagatgaagaacttccatctgctttcgtggaagaatataggtctgccatggatgctgaaattatgaagtatgtgagtgaaacatatccaaaaggcatcagttcagtttactgtacgaagggaaaggatgtggaagagccaggattcgactttgaacttgttgtggtgatttcagctgctaggcatagtcctcagaatttctgcaatggaagctggcgatcaatatggaatattgaatttaaggatgaaattcaatctgtagaagtgagaggcgagatgcaggttggcgcacattactttgaagagggaaatgtacagctagatgcaaaacacgaatgtaaggatacaacgctaattcagtccccagatgattctgcattttccctggtcaacattattcgccaccatgagactgagtatctggcttctcttcagacatcttacttgaaattgcctgataccactttcaaggacttgcggaggaagcttcccgttactcgtacattgttcccatggcacaacactgcacaatttagccttacaagagacattgaaaaagaacttggaattggaaaatagaaacattgcacgtcttttgtacaagttgaacatgtatacaccattcctgatatgacaagcgggtttacttgagattgccgtctccagctatttgttgtcttctcccttttgtgttcctttgagggagggattttcactttcagttattttaccatgtttgctaatgtgtgaacttccccttaagttgttaatttggcagttggcctgagggagttgtgaagagttgtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="50485" stop="46438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50185" g_stop="50143" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50142" i_stop="49269" i_length="874">
            <donor d_prob="0.981" d_score="0.95"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49268" g_stop="49107" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="205" r_length="162" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49106" i_stop="48814" i_length="293">
            <donor d_prob="0.770" d_score="1.00"/>
            <acceptor a_prob="0.803" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48813" g_stop="48735" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="284" r_length="79" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48734" i_stop="48491" i_length="244">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48490" g_stop="48413" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="362" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48412" i_stop="47349" i_length="1064">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47348" g_stop="47274" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="437" r_length="75" r_score="0.973"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47273" i_stop="47120" i_length="154">
            <donor d_prob="0.881" d_score="1.00"/>
            <acceptor a_prob="0.186" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47119" g_stop="47084" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="473" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="47083" i_stop="46992" i_length="92">
            <donor d_prob="0.920" d_score="0.00"/>
            <acceptor a_prob="0.809" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="46991" g_stop="46729" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="726" r_length="253" r_score="0.871"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E697780" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="0.909" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E697780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50185" e_stop="50143"/>
          <exon e_start="49268" e_stop="49107"/>
          <exon e_start="48813" e_stop="48735"/>
          <exon e_start="48490" e_stop="48413"/>
          <exon e_start="47348" e_stop="47274"/>
          <exon e_start="47119" e_stop="47084"/>
          <exon e_start="46991" e_stop="46729"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGAGATGAAGAACTTCCATCTGCTTTCGTGGAAGAGTATAGGTATGCATCTGTAGGGTATGAGATATATTTCTCAGTTTAATATCTTTGGTATTGCTCCCCTTTTTAGCTACTCACTTTCTGTTTTTCCCATTGAGATGTTGAAGTTCTTCTATATTATGACATTCACAATTATTTTGCCTAATTGGACTTATTTTTTAACCATGCTCAACAAGACTTGCAAATTCAACCTCAGTTCTCAGACAGCACTCAGATTATAGTTTAAGATATGCTAGAACAGTTGCATTTCTTGTGGAAATTGTCTTTCCGGCTTAATTGAAAAAAAAGCTGCATGTTTTGGTCTGCGCTCACCGAAATCAGTCTGAAAATAAATAGTTTAGGCTAATCTCTCCTATATAGATGCTCTTCTTCTTAATCAGTATCATTTGTTCTCTGTCCTTCTATATTACATTCTATGTCTTATCTTTCGGGATATTCTTAGTAATCTTCGCCTCAGTCCTCAAGTGTTAATAAGATCCTACATCATGATTCATGTGTGTTTTTATTCCATAAAGAGATCTGATTCATAATACACTGGTTTACCTTTTTGTTCATCTTTATCGGTGAGGAACCAGTGTCTCCAAATTAATGGGTAATGACATCAATGTCAGATACTAAAATGGTAGTAAGACACCTAAATTTGGTATAATTGGGAGGCATTAAGAGTATGAAAGGATTATATTCTGAGATCGCAGTGAATTCTTCAATAGTTCCTAATGCTTGGCATGCAGATTATAAAAATCATGTTTTTGTTTTATGTGAGTAGTTCCCTTCTTAACATGGTTAGTTCTTCTCATCAGAGGCTTGGTTTATGAGTACTGACTTTGTGATTACCGTTGCTTGCCAAATTCTCCTATTCATGGTAATTCTTGTGTAGGTCTGCCATGGATGCTGAAATTATGAAGTATGTGAGTGAAACATATCCAAAAGGCATCTGTTCAGTTTACTGTACGAAGGGAAAGGATGTGGAAGAGCCAGGATTTGACTTTGAACTTGTTGTGGTGATTTCAGCTGCTAGGCATAGTCCTCAGAATTTCTGGTGTGTTGGATTATTAAAATTCTAACCCTGACTAATTTGTGCAACACTCCCTTCATAATTTCTAAATAGTTATACTTATCGTGGTGCAGAACTTGTAAACAGATACTGAAGTAATAGGTTGCTATATATAAACAAAGAATGAGGGATTCTATTGCCTATTTTCCTGTCAGCTTCACACTTGTCACTTGCGTCAAGTGATATCTTGTTATAGCACGTGTGACTTGTCAATTGGGTCAACTGATACTTCTTATAGCTTTGTCTAAAGAAGCTGATACTATATGCATCTTTTGTAGCAATGGAAGCTGGCGATCAATATGGAATATTGAATTTAAGGACGATATTCAATCTGTAGAAGTGAGAGGCGAGATGCAGGTATGCTTTTATCAACAGTATGAGCATATAGTGTTTGCCTTTTGGTTTCCTGATCTTTATTTTAACCCTTTCACAGTTTTCTGGTTTCTTCACTGACTTTAGTCATGAATGTAGACTTTACTGAATTATTCTTTTTGGATTGAGCCGACCTTCTAGTTTATGGGTGAGGGTAGTTGTTGGCTTTTTGTTGTATCAAAAGCTTAAATATTCAAACTTGTATATCCTTTACCTGCTCTGTATTCAGGTTGGCGCCCATTACTTTGAAGAGGGAAATGTACAGCTAGATGCAAAACACAAATGTAAGGATACAACGCTAATTCAGGTAAGTGACTATAGTTTGTTCATAAAATTCTCTTTGCTTTGTTATCGTGTCTCCTGGTCTTAAATCATAAGGGTATAGCAGTTGTTCTCTGCTGTAGATTGTACTGTTTCTTTTGTTTGTTCTTAACCAGTCTAAGGGTTAACGCTTCAAAACAGCACATAGAGACTGTAGATTGATGCCTCGTGAAAGTACTCAGAGAATGCAATGAGAGTTCAATTCTTTTGGCAATAAATCATGATAAATTTTCTCAAAAGAAATTTAAGAGCAGTCTGAGTTTAGCTATTTTTCACCTCCCTTCTGCAGTGTGAGACTCTGGTTGTTGGTACTTGTTTTCAATAAGCAAAGTCTGTTAGTTCTCAACTTCATGGTATGTATTGTTTCCAGATTACCATGTCTGGAGCAAAATTATAAGCATTACTATCCAACTCTAGCAGTGGAAGAGACTTCCGTCTATGATAGCTTTTTTCATAATTTTCTTTCATTTAACATGATTTGTCTGTAATTTATACTTTCAATGAGAGTAAAAAGGCACTAGGATGGTTAGACAACCAAGAAAATGAAAAATGATATAGCTGCTTCTGCACATCCTACTTTTTGTATCTGTGTAGAGATTGAAGGTCATATTAATATCAACACTTTGTATCTTAAGCAATCTGATTGGAAATCATATTGTAGAAGAAATAGAAGTAGCATGCCAAGAAAATAAATGGTGAGACACAACAGTTTCTGGATATCCTATATTTTGCTGGTCTATTGTTGGAAAAAGGTAAAAGCTAAAATTTTATAAAAAATAATCTTGAGTGATCTGATTAGTAATCGAACAGGGAAGAAAAGAAGTAGCATGGTCAGACAGCCAGAAAGAACAAAAAGTGAGACAACTGTTTCTGGAAATCCTATTTGCTTAACTAGTGTAAATTTGAAGGTCAAGTTAAAGGAGAAGTTATTTTCTTGAACAATCTTATTAACTCGAAGAAATAAAAGTTTGATCAAGTCTATCTTGTGATTTTGTGTATATTTTCAATGGTTCAAGTTTGAATTTACTGATTTTGTGTTGTCTTTCTTAGTCCCCAGATGATTCTGCAATTTCCTTGGTCAACATTATTCGCCACCATGAGACTGAGTATCTGGCTTCTCTTCAGGTTTTTACGTTGTTCCTGCATCACATTCAACCCCTCCTTCAATCATGTCACCTAACACTTCCCCCTTCCCTGCCCCTCTCTTCCACCACTTCTCTGTCAAGTCTCTGTTGCCGGTATTTTCGTTCCAAGTTACTGATCGACTTTTTACTGGCAGACATCTTACTTGAAATTGCCTGATACCACTTTCAAGGTACTCCTTCAATGTTTCTCACTATGTCTTAGCTGAGAGAAACACCTCTCACCACCTTGCACCATGAAAAGGATGTTTCTCATCTTTTGCAGGACTTGCGGAGGAAGCTTCCCGTTACTCGTACATTGTTCCCATGGCACAACACTGCACAATTTAGCCTTACTCGAGATATTGAAAAAGAACTTCGAATTGGAAAATAGAAACATTGCATGTCTTTTTATACAAGTTGAATATGTACACAGTACACACCATTCTTGATATGACAAGCGAGTTTATACTTGAGATTGCCGTCTCCGGCTATTTGTTGCCTTCTTTCTATTGTATTCCTTTGAGAGAGGAAAGTTCATGCTAATTT</genome_strand>
        <mrna_strand>CGAGAGATGAAGAACTTCCATCTGCTTTCGTGGAAGAATATAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGCCATGGATGCTGAAATTATGAAGTATGTGAGTGAAACATATCCAAAAGGCATCAGTTCAGTTTACTGTACGAAGGGAAAGGATGTGGAAGAGCCAGGATTCGACTTTGAACTTGTTGTGGTGATTTCAGCTGCTAGGCATAGTCCTCAGAATTTCTG.....................................................................................................................................................................................................................................................................................................CAATGGAAGCTGGCGATCAATATGGAATATTGAATTTAAGGATGAAATTCAATCTGTAGAAGTGAGAGGCGAGATGCAG....................................................................................................................................................................................................................................................GTTGGCGCACATTACTTTGAAGAGGGAAATGTACAGCTAGATGCAAAACACGAATGTAAGGATACAACGCTAATTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCCCAGATGATTCTGCATTTTCCCTGGTCAACATTATTCGCCACCATGAGACTGAGTATCTGGCTTCTCTTCAG..........................................................................................................................................................ACATCTTACTTGAAATTGCCTGATACCACTTTCAAG............................................................................................GACTTGCGGAGGAAGCTTCCCGTTACTCGTACATTGTTCCCATGGCACAACACTGCACAATTTAGCCTTACAAGAGACATTGAAAAAGAACTTGGAATTGGAAAATAGAAACATTGCACGTC-TTTTGTACAAGTTGAACATGT----A-T--ACACCATTCCTGATATGACAAGCG-GGTT-TACTTGAGATTGCCGTCTCCAGCTATTTGTTGTCTTCTCCCTTTTGTGTTCCTTTGAGGGAGGGATTTTCACTTTCAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E274568" ref_strand="+" ref_description="SGN-E274568 [cLEN-11-P18]">
      <seq>gcaatggaagctggcgatcaatatggaatattgaatttaaggatgaaattcaatctgtataagtgagaggcgagatgcaggtctggcgcacattactttgaagagggaaatgtacagctagatgcaaaacacgaatgtaaggatacaacgctaattcagcccccagatgattctgcattttccctgctcaacattattcgccaccatgagactgagtatctggcttctcttcacacatcttacttgaaattgcctgataccactttcaaggacttgcggaggaagcttcccgttactcgtacattgttcccatggcacaacactgcacaatttagccttacaagagacattgaaaaagaacttggaattggaaaatagaaacattgcacgtcttttgtacaagttgaacatgtatacaccattcctgatatgacaagcgggtttacttgagattgccgtctccagctattcgatggcttctgccttttgtgttcctttgagggagggattttcactttcagttattataccatgtttgctaatgtgtgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="49114" stop="46438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48814" g_stop="48735" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48734" i_stop="48491" i_length="244">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48490" g_stop="48413" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="159" r_length="79" r_score="0.949"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48412" i_stop="47349" i_length="1064">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47348" g_stop="47274" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="234" r_length="75" r_score="0.933"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47273" i_stop="47120" i_length="154">
            <donor d_prob="0.881" d_score="0.96"/>
            <acceptor a_prob="0.186" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47119" g_stop="47084" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="270" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47083" i_stop="46992" i_length="92">
            <donor d_prob="0.920" d_score="0.00"/>
            <acceptor a_prob="0.809" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="46991" g_stop="46743" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="509" r_length="239" r_score="0.880"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E274568" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E274568" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48814" e_stop="48735"/>
          <exon e_start="48490" e_stop="48413"/>
          <exon e_start="47348" e_stop="47274"/>
          <exon e_start="47119" e_stop="47084"/>
          <exon e_start="46991" e_stop="46743"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAATGGAAGCTGGCGATCAATATGGAATATTGAATTTAAGGACGATATTCAATCTGTAGAAGTGAGAGGCGAGATGCAGGTATGCTTTTATCAACAGTATGAGCATATAGTGTTTGCCTTTTGGTTTCCTGATCTTTATTTTAACCCTTTCACAGTTTTCTGGTTTCTTCACTGACTTTAGTCATGAATGTAGACTTTACTGAATTATTCTTTTTGGATTGAGCCGACCTTCTAGTTTATGGGTGAGGGTAGTTGTTGGCTTTTTGTTGTATCAAAAGCTTAAATATTCAAACTTGTATATCCTTTACCTGCTCTGTATTCAGGT-TGGCGCCCATTACTTTGAAGAGGGAAATGTACAGCTAGATGCAAAACACAAATGTAAGGATACAACGCTAATTCAGGTAAGTGACTATAGTTTGTTCATAAAATTCTCTTTGCTTTGTTATCGTGTCTCCTGGTCTTAAATCATAAGGGTATAGCAGTTGTTCTCTGCTGTAGATTGTACTGTTTCTTTTGTTTGTTCTTAACCAGTCTAAGGGTTAACGCTTCAAAACAGCACATAGAGACTGTAGATTGATGCCTCGTGAAAGTACTCAGAGAATGCAATGAGAGTTCAATTCTTTTGGCAATAAATCATGATAAATTTTCTCAAAAGAAATTTAAGAGCAGTCTGAGTTTAGCTATTTTTCACCTCCCTTCTGCAGTGTGAGACTCTGGTTGTTGGTACTTGTTTTCAATAAGCAAAGTCTGTTAGTTCTCAACTTCATGGTATGTATTGTTTCCAGATTACCATGTCTGGAGCAAAATTATAAGCATTACTATCCAACTCTAGCAGTGGAAGAGACTTCCGTCTATGATAGCTTTTTTCATAATTTTCTTTCATTTAACATGATTTGTCTGTAATTTATACTTTCAATGAGAGTAAAAAGGCACTAGGATGGTTAGACAACCAAGAAAATGAAAAATGATATAGCTGCTTCTGCACATCCTACTTTTTGTATCTGTGTAGAGATTGAAGGTCATATTAATATCAACACTTTGTATCTTAAGCAATCTGATTGGAAATCATATTGTAGAAGAAATAGAAGTAGCATGCCAAGAAAATAAATGGTGAGACACAACAGTTTCTGGATATCCTATATTTTGCTGGTCTATTGTTGGAAAAAGGTAAAAGCTAAAATTTTATAAAAAATAATCTTGAGTGATCTGATTAGTAATCGAACAGGGAAGAAAAGAAGTAGCATGGTCAGACAGCCAGAAAGAACAAAAAGTGAGACAACTGTTTCTGGAAATCCTATTTGCTTAACTAGTGTAAATTTGAAGGTCAAGTTAAAGGAGAAGTTATTTTCTTGAACAATCTTATTAACTCGAAGAAATAAAAGTTTGATCAAGTCTATCTTGTGATTTTGTGTATATTTTCAATGGTTCAAGTTTGAATTTACTGATTTTGTGTTGTCTTTCTTAGTCCCCAGATGATTCTGCAATTTCCTTGGTCAACATTATTCGCCACCATGAGACTGAGTATCTGGCTTCTCTTCAGGTTTTTACGTTGTTCCTGCATCACATTCAACCCCTCCTTCAATCATGTCACCTAACACTTCCCCCTTCCCTGCCCCTCTCTTCCACCACTTCTCTGTCAAGTCTCTGTTGCCGGTATTTTCGTTCCAAGTTACTGATCGACTTTTTACTGGCAGACATCTTACTTGAAATTGCCTGATACCACTTTCAAGGTACTCCTTCAATGTTTCTCACTATGTCTTAGCTGAGAGAAACACCTCTCACCACCTTGCACCATGAAAAGGATGTTTCTCATCTTTTGCAGGACTTGCGGAGGAAGCTTCCCGTTACTCGTACATTGTTCCCATGGCACAACACTGCACAATTTAGCCTTACTCGAGATATTGAAAAAGAACTTCGAATTGGAAAATAGAAACATTGCATGTCTTTTTATACAAGTTGAATATGTACACAGTACACACCATTCTTGATATGACAAGCGAGTTTATACTTGAGATTGCCGTCTCCGGCTATTTGTTGCCTTCTTTCTATTGTATTCCTTTGAGAGAGGAAA</genome_strand>
        <mrna_strand>GCAATGGAAGCTGGCGATCAATATGGAATATTGAATTTAAGGATGAAATTCAATCTGTATAAGTGAGAGGCGAGATGCAG....................................................................................................................................................................................................................................................GTCTGGCGCACATTACTTTGAAGAGGGAAATGTACAGCTAGATGCAAAACACGAATGTAAGGATACAACGCTAATTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCCAGATGATTCTGCATTTTCCCTGCTCAACATTATTCGCCACCATGAGACTGAGTATCTGGCTTCTCTTCAC..........................................................................................................................................................ACATCTTACTTGAAATTGCCTGATACCACTTTCAAG............................................................................................GACTTGCGGAGGAAGCTTCCCGTTACTCGTACATTGTTCCCATGGCACAACACTGCACAATTTAGCCTTACAAGAGACATTGAAAAAGAACTTGGAATTGGAAAATAGAAACATTGCACGTC-TTTTGTACAAGTTGAACATGT----A-T--ACACCATTCCTGATATGACAAGCG-GGTT-TACTTGAGATTGCCGTCTCCAGCTATTCGATGGCTTCTGCCTTTTGTGTTCCTTTGAGGGAGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E215182" ref_strand="+" ref_description="SGN-E215182 [cLEL-20-C17](-)">
      <seq>gtccccagatgattctgcaatttccttggtcaacattattcgccaccatgagactgagtatctggcttctcttcaggtttttacgttgttcctgcatcacattcaacccctccttcaatcatgtcacctaacacttcccccttccctgcccctctcttccaccacttctctgtcaagtctctgttgccggtattttcgttccaagttactgatcgactttttactggcagacatcttacttgaaattgcctgataccactttcaaggacttgcggaggaagcttcccgttactcgtacattgttcccatggcacaacactgcacaatttagccttactcgagatattgaaaaagaacttcgaattggaaaatagaaacattgcatgtctttttatacaagttgaatatgtacacagtacacaccattcttgatatgacaagcgagtttatacttgaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="47649" stop="46500"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47349" g_stop="47084" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="266" r_length="266" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47083" i_stop="46992" i_length="92">
            <donor d_prob="0.920" d_score="1.00"/>
            <acceptor a_prob="0.809" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46991" g_stop="46801" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="457" r_length="191" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="458" polyA_stop="475"/>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E215182" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E215182" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47349" e_stop="47084"/>
          <exon e_start="46991" e_stop="46801"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCCCAGATGATTCTGCAATTTCCTTGGTCAACATTATTCGCCACCATGAGACTGAGTATCTGGCTTCTCTTCAGGTTTTTACGTTGTTCCTGCATCACATTCAACCCCTCCTTCAATCATGTCACCTAACACTTCCCCCTTCCCTGCCCCTCTCTTCCACCACTTCTCTGTCAAGTCTCTGTTGCCGGTATTTTCGTTCCAAGTTACTGATCGACTTTTTACTGGCAGACATCTTACTTGAAATTGCCTGATACCACTTTCAAGGTACTCCTTCAATGTTTCTCACTATGTCTTAGCTGAGAGAAACACCTCTCACCACCTTGCACCATGAAAAGGATGTTTCTCATCTTTTGCAGGACTTGCGGAGGAAGCTTCCCGTTACTCGTACATTGTTCCCATGGCACAACACTGCACAATTTAGCCTTACTCGAGATATTGAAAAAGAACTTCGAATTGGAAAATAGAAACATTGCATGTCTTTTTATACAAGTTGAATATGTACACAGTACACACCATTCTTGATATGACAAGCGAGTTTATACTTGAG</genome_strand>
        <mrna_strand>GTCCCCAGATGATTCTGCAATTTCCTTGGTCAACATTATTCGCCACCATGAGACTGAGTATCTGGCTTCTCTTCAGGTTTTTACGTTGTTCCTGCATCACATTCAACCCCTCCTTCAATCATGTCACCTAACACTTCCCCCTTCCCTGCCCCTCTCTTCCACCACTTCTCTGTCAAGTCTCTGTTGCCGGTATTTTCGTTCCAAGTTACTGATCGACTTTTTACTGGCAGACATCTTACTTGAAATTGCCTGATACCACTTTCAAG............................................................................................GACTTGCGGAGGAAGCTTCCCGTTACTCGTACATTGTTCCCATGGCACAACACTGCACAATTTAGCCTTACTCGAGATATTGAAAAAGAACTTCGAATTGGAAAATAGAAACATTGCATGTCTTTTTATACAAGTTGAATATGTACACAGTACACACCATTCTTGATATGACAAGCGAGTTTATACTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E215273" ref_strand="+" ref_description="SGN-E215273 [cLEL-20-C5](-)">
      <seq>ctcttcaggtttttacgttgttcntgcatcacattcaaaccccctcctcaatcatgtcacctaaacacttccnnnactcctgcccctctcttccaccacttctcgtcaagtctctgttgccggtattttcgttccaagttactgatcgactttttactggcagacatcttacttgaaattgcctgataccactttcaaggacttgcggaggaagcttcccgttactcgtacattgttcccatggcacaacactgcacaatttagccttactcgagatattgaaaaagaacttcgaattggaaaatagaaacattgcatgtctttttatacaagttgaatatgtacacagtacacaccattcttgatatgacaagcgagtttatacttgaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="47581" stop="46500"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47281" g_stop="47084" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="0.924"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47083" i_stop="46992" i_length="92">
            <donor d_prob="0.920" d_score="1.00"/>
            <acceptor a_prob="0.809" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46991" g_stop="46801" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="390" r_length="191" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="391" polyA_stop="408"/>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E215273" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>389</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E215273" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47281" e_stop="47084"/>
          <exon e_start="46991" e_stop="46801"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTCAGGTTTTTACGTTGTTCCTGCATCACATTCA-ACCCCTCCTTCAATCATGTCACCT-AACACTTCCCCCTTCCCTGCCCCTCTCTTCCACCACTTCTCTGTCAAGTCTCTGTTGCCGGTATTTTCGTTCCAAGTTACTGATCGACTTTTTACTGGCAGACATCTTACTTGAAATTGCCTGATACCACTTTCAAGGTACTCCTTCAATGTTTCTCACTATGTCTTAGCTGAGAGAAACACCTCTCACCACCTTGCACCATGAAAAGGATGTTTCTCATCTTTTGCAGGACTTGCGGAGGAAGCTTCCCGTTACTCGTACATTGTTCCCATGGCACAACACTGCACAATTTAGCCTTACTCGAGATATTGAAAAAGAACTTCGAATTGGAAAATAGAAACATTGCATGTCTTTTTATACAAGTTGAATATGTACACAGTACACACCATTCTTGATATGACAAGCGAGTTTATACTTGAG</genome_strand>
        <mrna_strand>CTCTTCAGGTTTTTACGTTGTTCNTGCATCACATTCAAACCCCCTCCTCAATCATGTCACCTAAACACTTCCNNNACTCCTGCCCCTCTCTTCCACCACTTCTC-GTCAAGTCTCTGTTGCCGGTATTTTCGTTCCAAGTTACTGATCGACTTTTTACTGGCAGACATCTTACTTGAAATTGCCTGATACCACTTTCAAG............................................................................................GACTTGCGGAGGAAGCTTCCCGTTACTCGTACATTGTTCCCATGGCACAACACTGCACAATTTAGCCTTACTCGAGATATTGAAAAAGAACTTCGAATTGGAAAATAGAAACATTGCATGTCTTTTTATACAAGTTGAATATGTACACAGTACACACCATTCTTGATATGACAAGCGAGTTTATACTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E215470" ref_strand="+" ref_description="SGN-E215470 [cLEL-20-C17](-)">
      <seq>tctcttccaccacttctctgtcaagtctctgttgccggtattttcgttccaagttactgatcgactttttactggcagacatcttacttgaaattgcctgataccactttcaaggacttgcggaggaagcttcccgttactcgtacattgttcccatggcacaacactgcacaatttagccttactcgagatattgaaaaagaacttcgaattggaaaatagaaacattgcatgtctttttatacaagttgaatatgtacacagtacacaccattcttgatatgacaagcgagtttatacttgaacaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="47497" stop="46502"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47197" g_stop="47084" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47083" i_stop="46992" i_length="92">
            <donor d_prob="0.920" d_score="1.00"/>
            <acceptor a_prob="0.809" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46991" g_stop="46801" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="305" r_length="191" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="307" polyA_stop="323"/>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E215470" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>305</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E215470" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47197" e_stop="47084"/>
          <exon e_start="46991" e_stop="46801"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTTCCACCACTTCTCTGTCAAGTCTCTGTTGCCGGTATTTTCGTTCCAAGTTACTGATCGACTTTTTACTGGCAGACATCTTACTTGAAATTGCCTGATACCACTTTCAAGGTACTCCTTCAATGTTTCTCACTATGTCTTAGCTGAGAGAAACACCTCTCACCACCTTGCACCATGAAAAGGATGTTTCTCATCTTTTGCAGGACTTGCGGAGGAAGCTTCCCGTTACTCGTACATTGTTCCCATGGCACAACACTGCACAATTTAGCCTTACTCGAGATATTGAAAAAGAACTTCGAATTGGAAAATAGAAACATTGCATGTCTTTTTATACAAGTTGAATATGTACACAGTACACACCATTCTTGATATGACAAGCGAGTTTATACTTGAG</genome_strand>
        <mrna_strand>TCTCTTCCACCACTTCTCTGTCAAGTCTCTGTTGCCGGTATTTTCGTTCCAAGTTACTGATCGACTTTTTACTGGCAGACATCTTACTTGAAATTGCCTGATACCACTTTCAAG............................................................................................GACTTGCGGAGGAAGCTTCCCGTTACTCGTACATTGTTCCCATGGCACAACACTGCACAATTTAGCCTTACTCGAGATATTGAAAAAGAACTTCGAATTGGAAAATAGAAACATTGCATGTCTTTTTATACAAGTTGAATATGTACACAGTACACACCATTCTTGATATGACAAGCGAGTTTATACTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E464565" ref_strand="+" ref_description="SGN-E464565 [cPRO-18-K8]">
      <seq>caaagatgttagagctattttaaaggacgaaaatatatataagaaagcggccgaggagtcatttccttcttacaacaaatctcacttgatttgtctcgaattcccaaacagaagtggcgatgtactgattacatcatttagtgaggttgataaggatgagtatcttgatccccggactgcccaggttgccagagttgaccatgtcaagcaagtttgtaaagacgttaggccagcaagagatgaagaacttccatctgctttcgtggaagagtataggtctgccatggatgctgaaattatgaagtatgtgagtgaaacatatccaaaaggcatctgttcagtttactgtacgaagggaaaggatgtggaagagccaggattcgactttgaacttgttgtggtgatttcagctgctagacatagtcctcagaatttctgcaatggaagctggcgatcaatatggaatattgaatttaaggatgaaattcaatccgtagaagtgagaggcgagatgcaggttggcgcccattactttgaagagggaaatgttcagctagatgcaaaacatgaatgtaaggatacaacgctaattcagtccccagatgattctgcaatttccttggtcaacattattcgccaccatgagactgagtatctggcttctcttcagacatcttacttgaaattgcctgataccact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="52729" stop="46790"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52592" g_stop="52588" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="5" r_length="5" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52587" i_stop="52428" i_length="160">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52427" g_stop="52312" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="121" r_length="116" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52311" i_stop="51576" i_length="736">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51575" g_stop="51486" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="211" r_length="90" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51485" i_stop="50208" i_length="1278">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50207" g_stop="50143" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="276" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="50142" i_stop="49269" i_length="874">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49268" g_stop="49107" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="438" r_length="162" r_score="0.988"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49106" i_stop="48814" i_length="293">
            <donor d_prob="0.770" d_score="0.98"/>
            <acceptor a_prob="0.803" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="48813" g_stop="48735" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="517" r_length="79" r_score="0.962"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="48734" i_stop="48491" i_length="244">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="48490" g_stop="48413" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="595" r_length="78" r_score="0.962"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="48412" i_stop="47349" i_length="1064">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="47348" g_stop="47274" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="670" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="47273" i_stop="47120" i_length="154">
            <donor d_prob="0.881" d_score="1.00"/>
            <acceptor a_prob="0.186" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="47119" g_stop="47090" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="671" r_stop="700" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E464565" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E464565" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52592" e_stop="52588"/>
          <exon e_start="52427" e_stop="52312"/>
          <exon e_start="51575" e_stop="51486"/>
          <exon e_start="50207" e_stop="50143"/>
          <exon e_start="49268" e_stop="49107"/>
          <exon e_start="48813" e_stop="48735"/>
          <exon e_start="48490" e_stop="48413"/>
          <exon e_start="47348" e_stop="47274"/>
          <exon e_start="47119" e_stop="47090"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGGTCTTCTTCTTCTTCTCTTTCGTTTATTTTCTGCGCTAAAGTTTTTTGTATTTTGAAGCTTTTTTCGTGCTTGAAAATGTGACCGCATTGGTGTTCATTTGCGATCGGCAGTTTATTTTTTACATTTTTGGTTTTGAGCGTCATTTGGTTGGATTTGCAGATGTTAGAGCTATTTTAAAGGACGAAAATATATATAAGAAAGCGGCCGAGGAGTCATTTCCTTCGTACAACAAATCTCACTTGATTTGTCTCGAATTCCCAAACAGAAGTGGCGATGTAAGTCTCTCTCTTGTTTTCTTTTTTCATTGGGTAAGTTAGATCTTTGAAAATGTAAGTTAGACTAATCGTGTCATTCAAATTGATAATTTCAGATTTGACAGTTTTCCGTAGTCGAAGATTGAAATATTAAGTGAACTGTAAGCAATACTTATTGTACTGATGTTGTAATTTTCCTTAGTTGATAATTTCAGATTTGGTAGTTTTCGGTAGTTGAAGATAAAAAATGAGGTAAATTGGAAGCAATATGATGTTGCAATTTCCTTACTTGGTTCATGACCTCTCTAGGCATCCTTTAGAGCTCAAAGACTGAATGAAAACAAAGGATAAAAGTTATGCTTGAGAAACTTTTCAAAAAAAAAGTTGCATGAGAAATAAGTAAGATTAATCTAATAAGTCTTCAAGTAAAGCTTTTAGGATAGAGATATACTTCATGGTACTTGGATGCTGGCGCTACTATATATGAATGAGTTGGGTGTTGTTTGTTGAGCACCATGTTTATGGACAAGTTCTCTACATCTGTTTAAAGCTTAGGGAATTTCCACCACTTCAATAAATGATTACTTCTTCAATATAGAAAAGAAAACTTTCCGGAGAACTGTTCCTTATGAAGTCTAAGATTTTGTTCCCCTCTTCTAAAAAGAAAGTATAATGCTTTTCATTTATGTAGTAATGGACACTTGGAAGCTATTTTTCATGATCTAGCTGTGTAAAGTTGCTGTTCACTAATTTGTAGGTACTGATTACATCATTTAGTGAGGTTCATAAGGATGAGTATCTTGATCCCCGGACTGCGCAGGTTGCCAGAGTTGACCATGTCAAGCAAGTACGTTGTTCAGTTAGTACACAATGCAAAATGCTATTTTTGGATTTTTTACAGTTTGGTGTTTTGACTTTCTTCTTGTTGATAAGATTAATAATTTCATTGGATGAGGCACCTCCTTCCATGTGCCACTAACAAACTACCTTGCAAAAACACAAAAGCACCAAAAATGGTGCTGGAATTTATCATCAAATCCCCAGTCCCTTAATTCCCCAATAGTTGCATGATATGTAAGTTTAAAAGCTCATAATCTTGAAGGGAATCATTTAATAACTTCTATTATCTTTTTATGATTGAAAAGTCCATTTCACTGTTCCTATCAGTTGAGCCGACAGAATTTAATAAATGATAATCTAAAGTGACTATGAAAAACTTATCTTTTTCTTTCTTTTTTTTCGGGGCATGGAGTGGTGGGATCCATAGAAGAGGAAGCAGGTTTGTAAGGATGAGTATTTTGTTTAGAAGGTAATTCAAAAAAGCAATAATATGGACAGACATAAACCTGGTAGAGATGGTGGGACTATATCCAAAAATGTGCTTATTCTGAAAGAAAGGAAAAGAAAAGTAAAAAGATCAGGACGAAGTAAGAAAAAAAGAAAGAGAAGCACATATAGTGCCGGGGGTACTCCTTTTTATGCTGTGCAATTAAAAATCTCTACATAAACTGGTTTTATGCTCATGTTGTTTATCTATAGTTTAGTATGTTTAGACATCTTCTGGCTGATTGGAACTTGATTAGTTAAACACACTCAGGCATTAGGGATAAAGAACAAAACACCAGAGTGAATTGTGTTAACTGTTAGGTTGGTTTTCATGATAGAAGTGGATACCAAGAATGAAGAAATTGTAAACTTGAAAAATGTGCTTTGATATAGCAAGCTCTTGATTAACCTCATTATTCAATAGTTATGAACTTCACATAAGATGCATTTTTTATTCTTGTTAATGGTGATGGAGTAAATACCAATTTTGGAAAAGTAAAATAAGGTCTCTTCTGCTATAGCTGGTCCATGGTTGTAAATTAATCCTCATTAGTCTACAGTGCTGAATGTCACATAACATGCATTTCTTTTCTATTCTTGTTAATGTGATGAAGTAGATGTAAATAGATTGGAAAAGTGGAAGTAGTCTCTGCTTAATATAACAAGTGCATGGTTTTATTCATAATTCAAGGGCTGTGAAATTAAATGTATTTCCTCTCTCTCTTTTTTTCCTAGTTATTGTTGCCGTGTAATAATTTATGCTCCCTTCTTGTAAGCTCATGGTATGTCTGCATTCTAGGTTTGTAAAGACGTTAGGCCAGCAAGAGATGAAGAACTTCCATCTGCTTTCGTGGAAGAGTATAGGTATGCATCTGTAGGGTATGAGATATATTTCTCAGTTTAATATCTTTGGTATTGCTCCCCTTTTTAGCTACTCACTTTCTGTTTTTCCCATTGAGATGTTGAAGTTCTTCTATATTATGACATTCACAATTATTTTGCCTAATTGGACTTATTTTTTAACCATGCTCAACAAGACTTGCAAATTCAACCTCAGTTCTCAGACAGCACTCAGATTATAGTTTAAGATATGCTAGAACAGTTGCATTTCTTGTGGAAATTGTCTTTCCGGCTTAATTGAAAAAAAAGCTGCATGTTTTGGTCTGCGCTCACCGAAATCAGTCTGAAAATAAATAGTTTAGGCTAATCTCTCCTATATAGATGCTCTTCTTCTTAATCAGTATCATTTGTTCTCTGTCCTTCTATATTACATTCTATGTCTTATCTTTCGGGATATTCTTAGTAATCTTCGCCTCAGTCCTCAAGTGTTAATAAGATCCTACATCATGATTCATGTGTGTTTTTATTCCATAAAGAGATCTGATTCATAATACACTGGTTTACCTTTTTGTTCATCTTTATCGGTGAGGAACCAGTGTCTCCAAATTAATGGGTAATGACATCAATGTCAGATACTAAAATGGTAGTAAGACACCTAAATTTGGTATAATTGGGAGGCATTAAGAGTATGAAAGGATTATATTCTGAGATCGCAGTGAATTCTTCAATAGTTCCTAATGCTTGGCATGCAGATTATAAAAATCATGTTTTTGTTTTATGTGAGTAGTTCCCTTCTTAACATGGTTAGTTCTTCTCATCAGAGGCTTGGTTTATGAGTACTGACTTTGTGATTACCGTTGCTTGCCAAATTCTCCTATTCATGGTAATTCTTGTGTAGGTCTGCCATGGATGCTGAAATTATGAAGTATGTGAGTGAAACATATCCAAAAGGCATCTGTTCAGTTTACTGTACGAAGGGAAAGGATGTGGAAGAGCCAGGATTTGACTTTGAACTTGTTGTGGTGATTTCAGCTGCTAGGCATAGTCCTCAGAATTTCTGGTGTGTTGGATTATTAAAATTCTAACCCTGACTAATTTGTGCAACACTCCCTTCATAATTTCTAAATAGTTATACTTATCGTGGTGCAGAACTTGTAAACAGATACTGAAGTAATAGGTTGCTATATATAAACAAAGAATGAGGGATTCTATTGCCTATTTTCCTGTCAGCTTCACACTTGTCACTTGCGTCAAGTGATATCTTGTTATAGCACGTGTGACTTGTCAATTGGGTCAACTGATACTTCTTATAGCTTTGTCTAAAGAAGCTGATACTATATGCATCTTTTGTAGCAATGGAAGCTGGCGATCAATATGGAATATTGAATTTAAGGACGATATTCAATCTGTAGAAGTGAGAGGCGAGATGCAGGTATGCTTTTATCAACAGTATGAGCATATAGTGTTTGCCTTTTGGTTTCCTGATCTTTATTTTAACCCTTTCACAGTTTTCTGGTTTCTTCACTGACTTTAGTCATGAATGTAGACTTTACTGAATTATTCTTTTTGGATTGAGCCGACCTTCTAGTTTATGGGTGAGGGTAGTTGTTGGCTTTTTGTTGTATCAAAAGCTTAAATATTCAAACTTGTATATCCTTTACCTGCTCTGTATTCAGGTTGGCGCCCATTACTTTGAAGAGGGAAATGTACAGCTAGATGCAAAACACAAATGTAAGGATACAACGCTAATTCAGGTAAGTGACTATAGTTTGTTCATAAAATTCTCTTTGCTTTGTTATCGTGTCTCCTGGTCTTAAATCATAAGGGTATAGCAGTTGTTCTCTGCTGTAGATTGTACTGTTTCTTTTGTTTGTTCTTAACCAGTCTAAGGGTTAACGCTTCAAAACAGCACATAGAGACTGTAGATTGATGCCTCGTGAAAGTACTCAGAGAATGCAATGAGAGTTCAATTCTTTTGGCAATAAATCATGATAAATTTTCTCAAAAGAAATTTAAGAGCAGTCTGAGTTTAGCTATTTTTCACCTCCCTTCTGCAGTGTGAGACTCTGGTTGTTGGTACTTGTTTTCAATAAGCAAAGTCTGTTAGTTCTCAACTTCATGGTATGTATTGTTTCCAGATTACCATGTCTGGAGCAAAATTATAAGCATTACTATCCAACTCTAGCAGTGGAAGAGACTTCCGTCTATGATAGCTTTTTTCATAATTTTCTTTCATTTAACATGATTTGTCTGTAATTTATACTTTCAATGAGAGTAAAAAGGCACTAGGATGGTTAGACAACCAAGAAAATGAAAAATGATATAGCTGCTTCTGCACATCCTACTTTTTGTATCTGTGTAGAGATTGAAGGTCATATTAATATCAACACTTTGTATCTTAAGCAATCTGATTGGAAATCATATTGTAGAAGAAATAGAAGTAGCATGCCAAGAAAATAAATGGTGAGACACAACAGTTTCTGGATATCCTATATTTTGCTGGTCTATTGTTGGAAAAAGGTAAAAGCTAAAATTTTATAAAAAATAATCTTGAGTGATCTGATTAGTAATCGAACAGGGAAGAAAAGAAGTAGCATGGTCAGACAGCCAGAAAGAACAAAAAGTGAGACAACTGTTTCTGGAAATCCTATTTGCTTAACTAGTGTAAATTTGAAGGTCAAGTTAAAGGAGAAGTTATTTTCTTGAACAATCTTATTAACTCGAAGAAATAAAAGTTTGATCAAGTCTATCTTGTGATTTTGTGTATATTTTCAATGGTTCAAGTTTGAATTTACTGATTTTGTGTTGTCTTTCTTAGTCCCCAGATGATTCTGCAATTTCCTTGGTCAACATTATTCGCCACCATGAGACTGAGTATCTGGCTTCTCTTCAGGTTTTTACGTTGTTCCTGCATCACATTCAACCCCTCCTTCAATCATGTCACCTAACACTTCCCCCTTCCCTGCCCCTCTCTTCCACCACTTCTCTGTCAAGTCTCTGTTGCCGGTATTTTCGTTCCAAGTTACTGATCGACTTTTTACTGGCAGACATCTTACTTGAAATTGCCTGATACCACT</genome_strand>
        <mrna_strand>CAAAG................................................................................................................................................................ATGTTAGAGCTATTTTAAAGGACGAAAATATATATAAGAAAGCGGCCGAGGAGTCATTTCCTTCTTACAACAAATCTCACTTGATTTGTCTCGAATTCCCAAACAGAAGTGGCGAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGATTACATCATTTAGTGAGGTTGATAAGGATGAGTATCTTGATCCCCGGACTGCCCAGGTTGCCAGAGTTGACCATGTCAAGCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTAAAGACGTTAGGCCAGCAAGAGATGAAGAACTTCCATCTGCTTTCGTGGAAGAGTATAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGCCATGGATGCTGAAATTATGAAGTATGTGAGTGAAACATATCCAAAAGGCATCTGTTCAGTTTACTGTACGAAGGGAAAGGATGTGGAAGAGCCAGGATTCGACTTTGAACTTGTTGTGGTGATTTCAGCTGCTAGACATAGTCCTCAGAATTTCTG.....................................................................................................................................................................................................................................................................................................CAATGGAAGCTGGCGATCAATATGGAATATTGAATTTAAGGATGAAATTCAATCCGTAGAAGTGAGAGGCGAGATGCAG....................................................................................................................................................................................................................................................GTTGGCGCCCATTACTTTGAAGAGGGAAATGTTCAGCTAGATGCAAAACATGAATGTAAGGATACAACGCTAATTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCCCAGATGATTCTGCAATTTCCTTGGTCAACATTATTCGCCACCATGAGACTGAGTATCTGGCTTCTCTTCAG..........................................................................................................................................................ACATCTTACTTGAAATTGCCTGATACCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E323287" ref_strand="+" ref_description="SGN-E323287 [cTOB-28-D20]">
      <seq>tctggtggggttatggtatcttcttcgaatttgaattgaattgaattcaatggagaagaatatctgttaataagataaaaatgttagaagaagacgaagattttctggaatcagaaactcaacttaccgatgaccagaaaattgagattgccaaatggttccttcttaatgcccccgccggcgaaattcagtacgtcgccaaagatgttagagccattttaaaggacgaaaatatatataagaaagcggccgaggagtcatttccttcgtacaacaaatctcacttgatttgtctcgaattcccaaacagaagtggcgatgtactgattacatccttcagtgaggttgataaggatgagtatcttgatccccgaactgcccaggttgccagagttgaccatgtcaagcaagtttgtaaagatgttaggccagcaagagatgaagaacttccatctgctttcgtggaagaatataggtctgccatggatgctgaaattatgaagtatgtgagtgaaacatatccaaaaggcatcagttcagtttactgtacgaagggaaaggatgtggaagagccaggattcgactttgaacttgttgtggtgatttcagctgctaggcatagtcctcagaatttctgcaatggaagctggcgatcaatatggaatattgaatttaaggatgaaattcaatctgtagaagtgagaggcgagatgcaggttggcgcacattactttgaagaggggaatgtacagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="53109" stop="48153"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52809" g_stop="52588" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="0.901"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52587" i_stop="52428" i_length="160">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52427" g_stop="52312" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="320" r_length="116" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52311" i_stop="51576" i_length="736">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51575" g_stop="51486" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="410" r_length="90" r_score="0.944"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51485" i_stop="50208" i_length="1278">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50207" g_stop="50143" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="475" r_length="65" r_score="0.969"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="50142" i_stop="49269" i_length="874">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49268" g_stop="49107" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="637" r_length="162" r_score="0.988"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49106" i_stop="48814" i_length="293">
            <donor d_prob="0.770" d_score="1.00"/>
            <acceptor a_prob="0.803" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="48813" g_stop="48735" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="716" r_length="79" r_score="0.975"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="48734" i_stop="48491" i_length="244">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="48490" g_stop="48453" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="717" r_stop="754" r_length="38" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E323287" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>772</cumulative_length_of_scored_exons>
        <coverage percentage="1.024" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52809" e_stop="52588"/>
          <exon e_start="52427" e_stop="52312"/>
          <exon e_start="51575" e_stop="51486"/>
          <exon e_start="50207" e_stop="50143"/>
          <exon e_start="49268" e_stop="49107"/>
          <exon e_start="48813" e_stop="48735"/>
          <exon e_start="48490" e_stop="48453"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGGTGGGGTTGATGGTATCTTCTTCGAATTTGAATTGAATTGAATTCAATGGAGAAGAATATCTGTTAATAAGATTGCAAAAAATAAATGATAAAAATGTTAGAAGAAGACGAAGATTTCCTGGAATCAGAAACACAACTTACTGATGACCAGAAAATTGAGATTGCCAAATGGTTCCTTCTTAATGCCCCAGCCGGCGAAATTCAGTACGTCGCCAAAGGTCTTCTTCTTCTTCTCTTTCGTTTATTTTCTGCGCTAAAGTTTTTTGTATTTTGAAGCTTTTTTCGTGCTTGAAAATGTGACCGCATTGGTGTTCATTTGCGATCGGCAGTTTATTTTTTACATTTTTGGTTTTGAGCGTCATTTGGTTGGATTTGCAGATGTTAGAGCTATTTTAAAGGACGAAAATATATATAAGAAAGCGGCCGAGGAGTCATTTCCTTCGTACAACAAATCTCACTTGATTTGTCTCGAATTCCCAAACAGAAGTGGCGATGTAAGTCTCTCTCTTGTTTTCTTTTTTCATTGGGTAAGTTAGATCTTTGAAAATGTAAGTTAGACTAATCGTGTCATTCAAATTGATAATTTCAGATTTGACAGTTTTCCGTAGTCGAAGATTGAAATATTAAGTGAACTGTAAGCAATACTTATTGTACTGATGTTGTAATTTTCCTTAGTTGATAATTTCAGATTTGGTAGTTTTCGGTAGTTGAAGATAAAAAATGAGGTAAATTGGAAGCAATATGATGTTGCAATTTCCTTACTTGGTTCATGACCTCTCTAGGCATCCTTTAGAGCTCAAAGACTGAATGAAAACAAAGGATAAAAGTTATGCTTGAGAAACTTTTCAAAAAAAAAGTTGCATGAGAAATAAGTAAGATTAATCTAATAAGTCTTCAAGTAAAGCTTTTAGGATAGAGATATACTTCATGGTACTTGGATGCTGGCGCTACTATATATGAATGAGTTGGGTGTTGTTTGTTGAGCACCATGTTTATGGACAAGTTCTCTACATCTGTTTAAAGCTTAGGGAATTTCCACCACTTCAATAAATGATTACTTCTTCAATATAGAAAAGAAAACTTTCCGGAGAACTGTTCCTTATGAAGTCTAAGATTTTGTTCCCCTCTTCTAAAAAGAAAGTATAATGCTTTTCATTTATGTAGTAATGGACACTTGGAAGCTATTTTTCATGATCTAGCTGTGTAAAGTTGCTGTTCACTAATTTGTAGGTACTGATTACATCATTTAGTGAGGTTCATAAGGATGAGTATCTTGATCCCCGGACTGCGCAGGTTGCCAGAGTTGACCATGTCAAGCAAGTACGTTGTTCAGTTAGTACACAATGCAAAATGCTATTTTTGGATTTTTTACAGTTTGGTGTTTTGACTTTCTTCTTGTTGATAAGATTAATAATTTCATTGGATGAGGCACCTCCTTCCATGTGCCACTAACAAACTACCTTGCAAAAACACAAAAGCACCAAAAATGGTGCTGGAATTTATCATCAAATCCCCAGTCCCTTAATTCCCCAATAGTTGCATGATATGTAAGTTTAAAAGCTCATAATCTTGAAGGGAATCATTTAATAACTTCTATTATCTTTTTATGATTGAAAAGTCCATTTCACTGTTCCTATCAGTTGAGCCGACAGAATTTAATAAATGATAATCTAAAGTGACTATGAAAAACTTATCTTTTTCTTTCTTTTTTTTCGGGGCATGGAGTGGTGGGATCCATAGAAGAGGAAGCAGGTTTGTAAGGATGAGTATTTTGTTTAGAAGGTAATTCAAAAAAGCAATAATATGGACAGACATAAACCTGGTAGAGATGGTGGGACTATATCCAAAAATGTGCTTATTCTGAAAGAAAGGAAAAGAAAAGTAAAAAGATCAGGACGAAGTAAGAAAAAAAGAAAGAGAAGCACATATAGTGCCGGGGGTACTCCTTTTTATGCTGTGCAATTAAAAATCTCTACATAAACTGGTTTTATGCTCATGTTGTTTATCTATAGTTTAGTATGTTTAGACATCTTCTGGCTGATTGGAACTTGATTAGTTAAACACACTCAGGCATTAGGGATAAAGAACAAAACACCAGAGTGAATTGTGTTAACTGTTAGGTTGGTTTTCATGATAGAAGTGGATACCAAGAATGAAGAAATTGTAAACTTGAAAAATGTGCTTTGATATAGCAAGCTCTTGATTAACCTCATTATTCAATAGTTATGAACTTCACATAAGATGCATTTTTTATTCTTGTTAATGGTGATGGAGTAAATACCAATTTTGGAAAAGTAAAATAAGGTCTCTTCTGCTATAGCTGGTCCATGGTTGTAAATTAATCCTCATTAGTCTACAGTGCTGAATGTCACATAACATGCATTTCTTTTCTATTCTTGTTAATGTGATGAAGTAGATGTAAATAGATTGGAAAAGTGGAAGTAGTCTCTGCTTAATATAACAAGTGCATGGTTTTATTCATAATTCAAGGGCTGTGAAATTAAATGTATTTCCTCTCTCTCTTTTTTTCCTAGTTATTGTTGCCGTGTAATAATTTATGCTCCCTTCTTGTAAGCTCATGGTATGTCTGCATTCTAGGTTTGTAAAGACGTTAGGCCAGCAAGAGATGAAGAACTTCCATCTGCTTTCGTGGAAGAGTATAGGTATGCATCTGTAGGGTATGAGATATATTTCTCAGTTTAATATCTTTGGTATTGCTCCCCTTTTTAGCTACTCACTTTCTGTTTTTCCCATTGAGATGTTGAAGTTCTTCTATATTATGACATTCACAATTATTTTGCCTAATTGGACTTATTTTTTAACCATGCTCAACAAGACTTGCAAATTCAACCTCAGTTCTCAGACAGCACTCAGATTATAGTTTAAGATATGCTAGAACAGTTGCATTTCTTGTGGAAATTGTCTTTCCGGCTTAATTGAAAAAAAAGCTGCATGTTTTGGTCTGCGCTCACCGAAATCAGTCTGAAAATAAATAGTTTAGGCTAATCTCTCCTATATAGATGCTCTTCTTCTTAATCAGTATCATTTGTTCTCTGTCCTTCTATATTACATTCTATGTCTTATCTTTCGGGATATTCTTAGTAATCTTCGCCTCAGTCCTCAAGTGTTAATAAGATCCTACATCATGATTCATGTGTGTTTTTATTCCATAAAGAGATCTGATTCATAATACACTGGTTTACCTTTTTGTTCATCTTTATCGGTGAGGAACCAGTGTCTCCAAATTAATGGGTAATGACATCAATGTCAGATACTAAAATGGTAGTAAGACACCTAAATTTGGTATAATTGGGAGGCATTAAGAGTATGAAAGGATTATATTCTGAGATCGCAGTGAATTCTTCAATAGTTCCTAATGCTTGGCATGCAGATTATAAAAATCATGTTTTTGTTTTATGTGAGTAGTTCCCTTCTTAACATGGTTAGTTCTTCTCATCAGAGGCTTGGTTTATGAGTACTGACTTTGTGATTACCGTTGCTTGCCAAATTCTCCTATTCATGGTAATTCTTGTGTAGGTCTGCCATGGATGCTGAAATTATGAAGTATGTGAGTGAAACATATCCAAAAGGCATCTGTTCAGTTTACTGTACGAAGGGAAAGGATGTGGAAGAGCCAGGATTTGACTTTGAACTTGTTGTGGTGATTTCAGCTGCTAGGCATAGTCCTCAGAATTTCTGGTGTGTTGGATTATTAAAATTCTAACCCTGACTAATTTGTGCAACACTCCCTTCATAATTTCTAAATAGTTATACTTATCGTGGTGCAGAACTTGTAAACAGATACTGAAGTAATAGGTTGCTATATATAAACAAAGAATGAGGGATTCTATTGCCTATTTTCCTGTCAGCTTCACACTTGTCACTTGCGTCAAGTGATATCTTGTTATAGCACGTGTGACTTGTCAATTGGGTCAACTGATACTTCTTATAGCTTTGTCTAAAGAAGCTGATACTATATGCATCTTTTGTAGCAATGGAAGCTGGCGATCAATATGGAATATTGAATTTAAGGACGATATTCAATCTGTAGAAGTGAGAGGCGAGATGCAGGTATGCTTTTATCAACAGTATGAGCATATAGTGTTTGCCTTTTGGTTTCCTGATCTTTATTTTAACCCTTTCACAGTTTTCTGGTTTCTTCACTGACTTTAGTCATGAATGTAGACTTTACTGAATTATTCTTTTTGGATTGAGCCGACCTTCTAGTTTATGGGTGAGGGTAGTTGTTGGCTTTTTGTTGTATCAAAAGCTTAAATATTCAAACTTGTATATCCTTTACCTGCTCTGTATTCAGGTTGGCGCCCATTACTTTGAAGAGGGAAATGTACAGCT</genome_strand>
        <mrna_strand>TCTGGTGGGGTT-ATGGTATCTTCTTCGAATTTGAATTGAATTGAATTCAATGGAGAAGAATATCTGTTAATAAGAT-----------------AAAAATGTTAGAAGAAGACGAAGATTTTCTGGAATCAGAAACTCAACTTACCGATGACCAGAAAATTGAGATTGCCAAATGGTTCCTTCTTAATGCCCCCGCCGGCGAAATTCAGTACGTCGCCAAAG................................................................................................................................................................ATGTTAGAGCCATTTTAAAGGACGAAAATATATATAAGAAAGCGGCCGAGGAGTCATTTCCTTCGTACAACAAATCTCACTTGATTTGTCTCGAATTCCCAAACAGAAGTGGCGAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGATTACATCCTTCAGTGAGGTTGATAAGGATGAGTATCTTGATCCCCGAACTGCCCAGGTTGCCAGAGTTGACCATGTCAAGCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTAAAGATGTTAGGCCAGCAAGAGATGAAGAACTTCCATCTGCTTTCGTGGAAGAATATAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGCCATGGATGCTGAAATTATGAAGTATGTGAGTGAAACATATCCAAAAGGCATCAGTTCAGTTTACTGTACGAAGGGAAAGGATGTGGAAGAGCCAGGATTCGACTTTGAACTTGTTGTGGTGATTTCAGCTGCTAGGCATAGTCCTCAGAATTTCTG.....................................................................................................................................................................................................................................................................................................CAATGGAAGCTGGCGATCAATATGGAATATTGAATTTAAGGATGAAATTCAATCTGTAGAAGTGAGAGGCGAGATGCAG....................................................................................................................................................................................................................................................GTTGGCGCACATTACTTTGAAGAGGGGAATGTACAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E582868" ref_strand="+" ref_description="SGN-E582868 [8501]">
      <seq>atttgctgacctctttggaaaggtactgattacatcatttagtgaggttgataaggatgagtatcttgatccccagactgcccaggttgccagagttgaccatgtcaagcaagtttgtaaagacgttatgccagcaagagatgaagaacttccatctgctttcgtggaagtgtataggtctgccatggatgctgaaattatgaagtatgtgagtgaaacatatccaaaaggcatctgttcagtttactgtacgaagggaaaggatgtggaagagccaggattcgactttgaacttgttgtggtgatttcagctgctatgcatagtcctcagaatttctgaacctgataccatatgcatcttctgtagcaatggaagatggcgatcaatatggaatattgaatttaaggatgaaattcaatctgtagaagtgagaggcgaggatgcaggttgaggcccattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="51877" stop="48430"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51575" g_stop="51486" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="112" r_length="90" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51485" i_stop="50208" i_length="1278">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50207" g_stop="50143" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="177" r_length="65" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50142" i_stop="49269" i_length="874">
            <donor d_prob="0.981" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49268" g_stop="49107" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="339" r_length="162" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49106" i_stop="48842" i_length="265">
            <donor d_prob="0.770" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48841" g_stop="48735" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="447" r_length="108" r_score="0.925"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48734" i_stop="48491" i_length="244">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48490" g_stop="48476" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="462" r_length="15" r_score="0.867"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E582868" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E582868" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51575" e_stop="51486"/>
          <exon e_start="50207" e_stop="50143"/>
          <exon e_start="49268" e_stop="49107"/>
          <exon e_start="48841" e_stop="48735"/>
          <exon e_start="48490" e_stop="48476"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTACTGATTACATCATTTAGTGAGGTTCATAAGGATGAGTATCTTGATCCCCGGACTGCGCAGGTTGCCAGAGTTGACCATGTCAAGCAAGTACGTTGTTCAGTTAGTACACAATGCAAAATGCTATTTTTGGATTTTTTACAGTTTGGTGTTTTGACTTTCTTCTTGTTGATAAGATTAATAATTTCATTGGATGAGGCACCTCCTTCCATGTGCCACTAACAAACTACCTTGCAAAAACACAAAAGCACCAAAAATGGTGCTGGAATTTATCATCAAATCCCCAGTCCCTTAATTCCCCAATAGTTGCATGATATGTAAGTTTAAAAGCTCATAATCTTGAAGGGAATCATTTAATAACTTCTATTATCTTTTTATGATTGAAAAGTCCATTTCACTGTTCCTATCAGTTGAGCCGACAGAATTTAATAAATGATAATCTAAAGTGACTATGAAAAACTTATCTTTTTCTTTCTTTTTTTTCGGGGCATGGAGTGGTGGGATCCATAGAAGAGGAAGCAGGTTTGTAAGGATGAGTATTTTGTTTAGAAGGTAATTCAAAAAAGCAATAATATGGACAGACATAAACCTGGTAGAGATGGTGGGACTATATCCAAAAATGTGCTTATTCTGAAAGAAAGGAAAAGAAAAGTAAAAAGATCAGGACGAAGTAAGAAAAAAAGAAAGAGAAGCACATATAGTGCCGGGGGTACTCCTTTTTATGCTGTGCAATTAAAAATCTCTACATAAACTGGTTTTATGCTCATGTTGTTTATCTATAGTTTAGTATGTTTAGACATCTTCTGGCTGATTGGAACTTGATTAGTTAAACACACTCAGGCATTAGGGATAAAGAACAAAACACCAGAGTGAATTGTGTTAACTGTTAGGTTGGTTTTCATGATAGAAGTGGATACCAAGAATGAAGAAATTGTAAACTTGAAAAATGTGCTTTGATATAGCAAGCTCTTGATTAACCTCATTATTCAATAGTTATGAACTTCACATAAGATGCATTTTTTATTCTTGTTAATGGTGATGGAGTAAATACCAATTTTGGAAAAGTAAAATAAGGTCTCTTCTGCTATAGCTGGTCCATGGTTGTAAATTAATCCTCATTAGTCTACAGTGCTGAATGTCACATAACATGCATTTCTTTTCTATTCTTGTTAATGTGATGAAGTAGATGTAAATAGATTGGAAAAGTGGAAGTAGTCTCTGCTTAATATAACAAGTGCATGGTTTTATTCATAATTCAAGGGCTGTGAAATTAAATGTATTTCCTCTCTCTCTTTTTTTCCTAGTTATTGTTGCCGTGTAATAATTTATGCTCCCTTCTTGTAAGCTCATGGTATGTCTGCATTCTAGGTTTGTAAAGACGTTAGGCCAGCAAGAGATGAAGAACTTCCATCTGCTTTCGTGGAAGAGTATAGGTATGCATCTGTAGGGTATGAGATATATTTCTCAGTTTAATATCTTTGGTATTGCTCCCCTTTTTAGCTACTCACTTTCTGTTTTTCCCATTGAGATGTTGAAGTTCTTCTATATTATGACATTCACAATTATTTTGCCTAATTGGACTTATTTTTTAACCATGCTCAACAAGACTTGCAAATTCAACCTCAGTTCTCAGACAGCACTCAGATTATAGTTTAAGATATGCTAGAACAGTTGCATTTCTTGTGGAAATTGTCTTTCCGGCTTAATTGAAAAAAAAGCTGCATGTTTTGGTCTGCGCTCACCGAAATCAGTCTGAAAATAAATAGTTTAGGCTAATCTCTCCTATATAGATGCTCTTCTTCTTAATCAGTATCATTTGTTCTCTGTCCTTCTATATTACATTCTATGTCTTATCTTTCGGGATATTCTTAGTAATCTTCGCCTCAGTCCTCAAGTGTTAATAAGATCCTACATCATGATTCATGTGTGTTTTTATTCCATAAAGAGATCTGATTCATAATACACTGGTTTACCTTTTTGTTCATCTTTATCGGTGAGGAACCAGTGTCTCCAAATTAATGGGTAATGACATCAATGTCAGATACTAAAATGGTAGTAAGACACCTAAATTTGGTATAATTGGGAGGCATTAAGAGTATGAAAGGATTATATTCTGAGATCGCAGTGAATTCTTCAATAGTTCCTAATGCTTGGCATGCAGATTATAAAAATCATGTTTTTGTTTTATGTGAGTAGTTCCCTTCTTAACATGGTTAGTTCTTCTCATCAGAGGCTTGGTTTATGAGTACTGACTTTGTGATTACCGTTGCTTGCCAAATTCTCCTATTCATGGTAATTCTTGTGTAGGTCTGCCATGGATGCTGAAATTATGAAGTATGTGAGTGAAACATATCCAAAAGGCATCTGTTCAGTTTACTGTACGAAGGGAAAGGATGTGGAAGAGCCAGGATTTGACTTTGAACTTGTTGTGGTGATTTCAGCTGCTAGGCATAGTCCTCAGAATTTCTGGTGTGTTGGATTATTAAAATTCTAACCCTGACTAATTTGTGCAACACTCCCTTCATAATTTCTAAATAGTTATACTTATCGTGGTGCAGAACTTGTAAACAGATACTGAAGTAATAGGTTGCTATATATAAACAAAGAATGAGGGATTCTATTGCCTATTTTCCTGTCAGCTTCACACTTGTCACTTGCGTCAAGTGATATCTTGTTATAGCACGTGTGACTTGTCAATTGGGTCAACTGATACTTCTTATAGCTTTGTCTAAAGAAGCTGATACTATATGCATCTTTTGTAGCAATGGAAGCTGGCGATCAATATGGAATATTGAATTTAAGGACGATATTCAATCTGTAGAAGTGAGAGGCGA-GATGCAGGTATGCTTTTATCAACAGTATGAGCATATAGTGTTTGCCTTTTGGTTTCCTGATCTTTATTTTAACCCTTTCACAGTTTTCTGGTTTCTTCACTGACTTTAGTCATGAATGTAGACTTTACTGAATTATTCTTTTTGGATTGAGCCGACCTTCTAGTTTATGGGTGAGGGTAGTTGTTGGCTTTTTGTTGTATCAAAAGCTTAAATATTCAAACTTGTATATCCTTTACCTGCTCTGTATTCAGGTTGGCGCCCATTAC</genome_strand>
        <mrna_strand>GTACTGATTACATCATTTAGTGAGGTTGATAAGGATGAGTATCTTGATCCCCAGACTGCCCAGGTTGCCAGAGTTGACCATGTCAAGCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTAAAGACGTTATGCCAGCAAGAGATGAAGAACTTCCATCTGCTTTCGTGGAAGTGTATAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGCCATGGATGCTGAAATTATGAAGTATGTGAGTGAAACATATCCAAAAGGCATCTGTTCAGTTTACTGTACGAAGGGAAAGGATGTGGAAGAGCCAGGATTCGACTTTGAACTTGTTGTGGTGATTTCAGCTGCTATGCATAGTCCTCAGAATTTCTG.........................................................................................................................................................................................................................................................................AACCTGATACCATATGCATCTTCTGTAGCAATGGAAGATGGCGATCAATATGGAATATTGAATTTAAGGATGAAATTCAATCTGTAGAAGTGAGAGGCGAGGATGCAG....................................................................................................................................................................................................................................................GTTGAGGCCCATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E331357" ref_strand="+" ref_description="SGN-E331357 [cTOD-9-O1]">
      <seq>ttcaatggagaagaatatctgttaataagataaaaatgttagaagaagacgaagattttctggaatcagaaactcaacttaccgatgaccagaaaattgagattgccaaatggttccttcttaatgcccccgccggcgaaattcagtacgtcgccaaagatgttagagccattttaaaggacgaaaatatatataagaaagcggccgaggagtcatttccttcgtacaacaaatctcacttgatttgtctcgaattcccaaacagaagtggcgatgtactgattacatccttcagtgaggttgataaggatgagtatcttgatccccgaactgcccaggttgccagagttgaccatgtcaagcaagtttgtaaagatgttaggccagcaagagatgaagaacttccatctgctttcgtggaagaatataggtctgccatggatgctgaaattatgaagtatgtgagtgaaacatatccaaaaggcatcagttcagtttactgtacgaagggaaaggatgtggaagagccaggattcgactttgaacttgttgtggtgatttcagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="53063" stop="48832"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52747" g_stop="52588" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="0.869"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52587" i_stop="52428" i_length="160">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52427" g_stop="52312" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="275" r_length="116" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52311" i_stop="51576" i_length="736">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51575" g_stop="51486" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="365" r_length="90" r_score="0.944"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51485" i_stop="50208" i_length="1278">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50207" g_stop="50143" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="430" r_length="65" r_score="0.969"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="50142" i_stop="49269" i_length="874">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49268" g_stop="49133" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="566" r_length="136" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E331357" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331357" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52747" e_stop="52588"/>
          <exon e_start="52427" e_stop="52312"/>
          <exon e_start="51575" e_stop="51486"/>
          <exon e_start="50207" e_stop="50143"/>
          <exon e_start="49268" e_stop="49133"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTGTTAATAAGATTGCAAAAAATAAATGATAAAAATGTTAGAAGAAGACGAAGATTTCCTGGAATCAGAAACACAACTTACTGATGACCAGAAAATTGAGATTGCCAAATGGTTCCTTCTTAATGCCCCAGCCGGCGAAATTCAGTACGTCGCCAAAGGTCTTCTTCTTCTTCTCTTTCGTTTATTTTCTGCGCTAAAGTTTTTTGTATTTTGAAGCTTTTTTCGTGCTTGAAAATGTGACCGCATTGGTGTTCATTTGCGATCGGCAGTTTATTTTTTACATTTTTGGTTTTGAGCGTCATTTGGTTGGATTTGCAGATGTTAGAGCTATTTTAAAGGACGAAAATATATATAAGAAAGCGGCCGAGGAGTCATTTCCTTCGTACAACAAATCTCACTTGATTTGTCTCGAATTCCCAAACAGAAGTGGCGATGTAAGTCTCTCTCTTGTTTTCTTTTTTCATTGGGTAAGTTAGATCTTTGAAAATGTAAGTTAGACTAATCGTGTCATTCAAATTGATAATTTCAGATTTGACAGTTTTCCGTAGTCGAAGATTGAAATATTAAGTGAACTGTAAGCAATACTTATTGTACTGATGTTGTAATTTTCCTTAGTTGATAATTTCAGATTTGGTAGTTTTCGGTAGTTGAAGATAAAAAATGAGGTAAATTGGAAGCAATATGATGTTGCAATTTCCTTACTTGGTTCATGACCTCTCTAGGCATCCTTTAGAGCTCAAAGACTGAATGAAAACAAAGGATAAAAGTTATGCTTGAGAAACTTTTCAAAAAAAAAGTTGCATGAGAAATAAGTAAGATTAATCTAATAAGTCTTCAAGTAAAGCTTTTAGGATAGAGATATACTTCATGGTACTTGGATGCTGGCGCTACTATATATGAATGAGTTGGGTGTTGTTTGTTGAGCACCATGTTTATGGACAAGTTCTCTACATCTGTTTAAAGCTTAGGGAATTTCCACCACTTCAATAAATGATTACTTCTTCAATATAGAAAAGAAAACTTTCCGGAGAACTGTTCCTTATGAAGTCTAAGATTTTGTTCCCCTCTTCTAAAAAGAAAGTATAATGCTTTTCATTTATGTAGTAATGGACACTTGGAAGCTATTTTTCATGATCTAGCTGTGTAAAGTTGCTGTTCACTAATTTGTAGGTACTGATTACATCATTTAGTGAGGTTCATAAGGATGAGTATCTTGATCCCCGGACTGCGCAGGTTGCCAGAGTTGACCATGTCAAGCAAGTACGTTGTTCAGTTAGTACACAATGCAAAATGCTATTTTTGGATTTTTTACAGTTTGGTGTTTTGACTTTCTTCTTGTTGATAAGATTAATAATTTCATTGGATGAGGCACCTCCTTCCATGTGCCACTAACAAACTACCTTGCAAAAACACAAAAGCACCAAAAATGGTGCTGGAATTTATCATCAAATCCCCAGTCCCTTAATTCCCCAATAGTTGCATGATATGTAAGTTTAAAAGCTCATAATCTTGAAGGGAATCATTTAATAACTTCTATTATCTTTTTATGATTGAAAAGTCCATTTCACTGTTCCTATCAGTTGAGCCGACAGAATTTAATAAATGATAATCTAAAGTGACTATGAAAAACTTATCTTTTTCTTTCTTTTTTTTCGGGGCATGGAGTGGTGGGATCCATAGAAGAGGAAGCAGGTTTGTAAGGATGAGTATTTTGTTTAGAAGGTAATTCAAAAAAGCAATAATATGGACAGACATAAACCTGGTAGAGATGGTGGGACTATATCCAAAAATGTGCTTATTCTGAAAGAAAGGAAAAGAAAAGTAAAAAGATCAGGACGAAGTAAGAAAAAAAGAAAGAGAAGCACATATAGTGCCGGGGGTACTCCTTTTTATGCTGTGCAATTAAAAATCTCTACATAAACTGGTTTTATGCTCATGTTGTTTATCTATAGTTTAGTATGTTTAGACATCTTCTGGCTGATTGGAACTTGATTAGTTAAACACACTCAGGCATTAGGGATAAAGAACAAAACACCAGAGTGAATTGTGTTAACTGTTAGGTTGGTTTTCATGATAGAAGTGGATACCAAGAATGAAGAAATTGTAAACTTGAAAAATGTGCTTTGATATAGCAAGCTCTTGATTAACCTCATTATTCAATAGTTATGAACTTCACATAAGATGCATTTTTTATTCTTGTTAATGGTGATGGAGTAAATACCAATTTTGGAAAAGTAAAATAAGGTCTCTTCTGCTATAGCTGGTCCATGGTTGTAAATTAATCCTCATTAGTCTACAGTGCTGAATGTCACATAACATGCATTTCTTTTCTATTCTTGTTAATGTGATGAAGTAGATGTAAATAGATTGGAAAAGTGGAAGTAGTCTCTGCTTAATATAACAAGTGCATGGTTTTATTCATAATTCAAGGGCTGTGAAATTAAATGTATTTCCTCTCTCTCTTTTTTTCCTAGTTATTGTTGCCGTGTAATAATTTATGCTCCCTTCTTGTAAGCTCATGGTATGTCTGCATTCTAGGTTTGTAAAGACGTTAGGCCAGCAAGAGATGAAGAACTTCCATCTGCTTTCGTGGAAGAGTATAGGTATGCATCTGTAGGGTATGAGATATATTTCTCAGTTTAATATCTTTGGTATTGCTCCCCTTTTTAGCTACTCACTTTCTGTTTTTCCCATTGAGATGTTGAAGTTCTTCTATATTATGACATTCACAATTATTTTGCCTAATTGGACTTATTTTTTAACCATGCTCAACAAGACTTGCAAATTCAACCTCAGTTCTCAGACAGCACTCAGATTATAGTTTAAGATATGCTAGAACAGTTGCATTTCTTGTGGAAATTGTCTTTCCGGCTTAATTGAAAAAAAAGCTGCATGTTTTGGTCTGCGCTCACCGAAATCAGTCTGAAAATAAATAGTTTAGGCTAATCTCTCCTATATAGATGCTCTTCTTCTTAATCAGTATCATTTGTTCTCTGTCCTTCTATATTACATTCTATGTCTTATCTTTCGGGATATTCTTAGTAATCTTCGCCTCAGTCCTCAAGTGTTAATAAGATCCTACATCATGATTCATGTGTGTTTTTATTCCATAAAGAGATCTGATTCATAATACACTGGTTTACCTTTTTGTTCATCTTTATCGGTGAGGAACCAGTGTCTCCAAATTAATGGGTAATGACATCAATGTCAGATACTAAAATGGTAGTAAGACACCTAAATTTGGTATAATTGGGAGGCATTAAGAGTATGAAAGGATTATATTCTGAGATCGCAGTGAATTCTTCAATAGTTCCTAATGCTTGGCATGCAGATTATAAAAATCATGTTTTTGTTTTATGTGAGTAGTTCCCTTCTTAACATGGTTAGTTCTTCTCATCAGAGGCTTGGTTTATGAGTACTGACTTTGTGATTACCGTTGCTTGCCAAATTCTCCTATTCATGGTAATTCTTGTGTAGGTCTGCCATGGATGCTGAAATTATGAAGTATGTGAGTGAAACATATCCAAAAGGCATCTGTTCAGTTTACTGTACGAAGGGAAAGGATGTGGAAGAGCCAGGATTTGACTTTGAACTTGTTGTGGTGATTTCAGCT</genome_strand>
        <mrna_strand>TTCAATGGAGAAGAATATCTGTTA-ATAAGATAAAAATGTTAGAAGAAGACGAAGATTTTCTGGAATCAGAAACTCAACTTACCGATGACCAGAAAATTGAGATTGCCAAATGGTTCCTTCTTAATGCCCCCGCCGGCGAAATTCAGTACGTCGCCAAAG................................................................................................................................................................ATGTTAGAGCCATTTTAAAGGACGAAAATATATATAAGAAAGCGGCCGAGGAGTCATTTCCTTCGTACAACAAATCTCACTTGATTTGTCTCGAATTCCCAAACAGAAGTGGCGAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGATTACATCCTTCAGTGAGGTTGATAAGGATGAGTATCTTGATCCCCGAACTGCCCAGGTTGCCAGAGTTGACCATGTCAAGCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTAAAGATGTTAGGCCAGCAAGAGATGAAGAACTTCCATCTGCTTTCGTGGAAGAATATAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGCCATGGATGCTGAAATTATGAAGTATGTGAGTGAAACATATCCAAAAGGCATCAGTTCAGTTTACTGTACGAAGGGAAAGGATGTGGAAGAGCCAGGATTCGACTTTGAACTTGTTGTGGTGATTTCAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E697392" ref_strand="+" ref_description="SGN-E697392 [FA02CH12]">
      <seq>aatcagaaactcaacttaccgatgaccagaaaattgagattgccaaatggttccttcttaatgcccccgccggcgaaattcagtacgtcgccaaagatgttagagccattttaaaggacgaaaatatatataagaaagcggccgaggagtcatttccttcgtacaacaaatctcacttgatttgtctcgaattcccaaacagaagtggcgatgtactgattacatccttcagtgaggttgataaggatgagtatcttgatccccgaactgcccaggttgccagagttgaccatgtcaagcaagtttgtaaagatgttaggccagcaagagatgaagaacttccatctgctttcgtggaagaatataggtctgccatggatgctgaaattatgaagtatgtgagtgaaacatatccaaaaggcatcagttcagtttactgtacgaagggaaaggatgtggaagagccaggattcgactttgaacttgttgtggtgatttcagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="52983" stop="48832"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52683" g_stop="52588" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52587" i_stop="52428" i_length="160">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52427" g_stop="52312" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="212" r_length="116" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52311" i_stop="51576" i_length="736">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51575" g_stop="51486" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="302" r_length="90" r_score="0.944"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51485" i_stop="50208" i_length="1278">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50207" g_stop="50143" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="367" r_length="65" r_score="0.969"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="50142" i_stop="49269" i_length="874">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49268" g_stop="49133" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="503" r_length="136" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E697392" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E697392" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52683" e_stop="52588"/>
          <exon e_start="52427" e_stop="52312"/>
          <exon e_start="51575" e_stop="51486"/>
          <exon e_start="50207" e_stop="50143"/>
          <exon e_start="49268" e_stop="49133"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAGAAACACAACTTACTGATGACCAGAAAATTGAGATTGCCAAATGGTTCCTTCTTAATGCCCCAGCCGGCGAAATTCAGTACGTCGCCAAAGGTCTTCTTCTTCTTCTCTTTCGTTTATTTTCTGCGCTAAAGTTTTTTGTATTTTGAAGCTTTTTTCGTGCTTGAAAATGTGACCGCATTGGTGTTCATTTGCGATCGGCAGTTTATTTTTTACATTTTTGGTTTTGAGCGTCATTTGGTTGGATTTGCAGATGTTAGAGCTATTTTAAAGGACGAAAATATATATAAGAAAGCGGCCGAGGAGTCATTTCCTTCGTACAACAAATCTCACTTGATTTGTCTCGAATTCCCAAACAGAAGTGGCGATGTAAGTCTCTCTCTTGTTTTCTTTTTTCATTGGGTAAGTTAGATCTTTGAAAATGTAAGTTAGACTAATCGTGTCATTCAAATTGATAATTTCAGATTTGACAGTTTTCCGTAGTCGAAGATTGAAATATTAAGTGAACTGTAAGCAATACTTATTGTACTGATGTTGTAATTTTCCTTAGTTGATAATTTCAGATTTGGTAGTTTTCGGTAGTTGAAGATAAAAAATGAGGTAAATTGGAAGCAATATGATGTTGCAATTTCCTTACTTGGTTCATGACCTCTCTAGGCATCCTTTAGAGCTCAAAGACTGAATGAAAACAAAGGATAAAAGTTATGCTTGAGAAACTTTTCAAAAAAAAAGTTGCATGAGAAATAAGTAAGATTAATCTAATAAGTCTTCAAGTAAAGCTTTTAGGATAGAGATATACTTCATGGTACTTGGATGCTGGCGCTACTATATATGAATGAGTTGGGTGTTGTTTGTTGAGCACCATGTTTATGGACAAGTTCTCTACATCTGTTTAAAGCTTAGGGAATTTCCACCACTTCAATAAATGATTACTTCTTCAATATAGAAAAGAAAACTTTCCGGAGAACTGTTCCTTATGAAGTCTAAGATTTTGTTCCCCTCTTCTAAAAAGAAAGTATAATGCTTTTCATTTATGTAGTAATGGACACTTGGAAGCTATTTTTCATGATCTAGCTGTGTAAAGTTGCTGTTCACTAATTTGTAGGTACTGATTACATCATTTAGTGAGGTTCATAAGGATGAGTATCTTGATCCCCGGACTGCGCAGGTTGCCAGAGTTGACCATGTCAAGCAAGTACGTTGTTCAGTTAGTACACAATGCAAAATGCTATTTTTGGATTTTTTACAGTTTGGTGTTTTGACTTTCTTCTTGTTGATAAGATTAATAATTTCATTGGATGAGGCACCTCCTTCCATGTGCCACTAACAAACTACCTTGCAAAAACACAAAAGCACCAAAAATGGTGCTGGAATTTATCATCAAATCCCCAGTCCCTTAATTCCCCAATAGTTGCATGATATGTAAGTTTAAAAGCTCATAATCTTGAAGGGAATCATTTAATAACTTCTATTATCTTTTTATGATTGAAAAGTCCATTTCACTGTTCCTATCAGTTGAGCCGACAGAATTTAATAAATGATAATCTAAAGTGACTATGAAAAACTTATCTTTTTCTTTCTTTTTTTTCGGGGCATGGAGTGGTGGGATCCATAGAAGAGGAAGCAGGTTTGTAAGGATGAGTATTTTGTTTAGAAGGTAATTCAAAAAAGCAATAATATGGACAGACATAAACCTGGTAGAGATGGTGGGACTATATCCAAAAATGTGCTTATTCTGAAAGAAAGGAAAAGAAAAGTAAAAAGATCAGGACGAAGTAAGAAAAAAAGAAAGAGAAGCACATATAGTGCCGGGGGTACTCCTTTTTATGCTGTGCAATTAAAAATCTCTACATAAACTGGTTTTATGCTCATGTTGTTTATCTATAGTTTAGTATGTTTAGACATCTTCTGGCTGATTGGAACTTGATTAGTTAAACACACTCAGGCATTAGGGATAAAGAACAAAACACCAGAGTGAATTGTGTTAACTGTTAGGTTGGTTTTCATGATAGAAGTGGATACCAAGAATGAAGAAATTGTAAACTTGAAAAATGTGCTTTGATATAGCAAGCTCTTGATTAACCTCATTATTCAATAGTTATGAACTTCACATAAGATGCATTTTTTATTCTTGTTAATGGTGATGGAGTAAATACCAATTTTGGAAAAGTAAAATAAGGTCTCTTCTGCTATAGCTGGTCCATGGTTGTAAATTAATCCTCATTAGTCTACAGTGCTGAATGTCACATAACATGCATTTCTTTTCTATTCTTGTTAATGTGATGAAGTAGATGTAAATAGATTGGAAAAGTGGAAGTAGTCTCTGCTTAATATAACAAGTGCATGGTTTTATTCATAATTCAAGGGCTGTGAAATTAAATGTATTTCCTCTCTCTCTTTTTTTCCTAGTTATTGTTGCCGTGTAATAATTTATGCTCCCTTCTTGTAAGCTCATGGTATGTCTGCATTCTAGGTTTGTAAAGACGTTAGGCCAGCAAGAGATGAAGAACTTCCATCTGCTTTCGTGGAAGAGTATAGGTATGCATCTGTAGGGTATGAGATATATTTCTCAGTTTAATATCTTTGGTATTGCTCCCCTTTTTAGCTACTCACTTTCTGTTTTTCCCATTGAGATGTTGAAGTTCTTCTATATTATGACATTCACAATTATTTTGCCTAATTGGACTTATTTTTTAACCATGCTCAACAAGACTTGCAAATTCAACCTCAGTTCTCAGACAGCACTCAGATTATAGTTTAAGATATGCTAGAACAGTTGCATTTCTTGTGGAAATTGTCTTTCCGGCTTAATTGAAAAAAAAGCTGCATGTTTTGGTCTGCGCTCACCGAAATCAGTCTGAAAATAAATAGTTTAGGCTAATCTCTCCTATATAGATGCTCTTCTTCTTAATCAGTATCATTTGTTCTCTGTCCTTCTATATTACATTCTATGTCTTATCTTTCGGGATATTCTTAGTAATCTTCGCCTCAGTCCTCAAGTGTTAATAAGATCCTACATCATGATTCATGTGTGTTTTTATTCCATAAAGAGATCTGATTCATAATACACTGGTTTACCTTTTTGTTCATCTTTATCGGTGAGGAACCAGTGTCTCCAAATTAATGGGTAATGACATCAATGTCAGATACTAAAATGGTAGTAAGACACCTAAATTTGGTATAATTGGGAGGCATTAAGAGTATGAAAGGATTATATTCTGAGATCGCAGTGAATTCTTCAATAGTTCCTAATGCTTGGCATGCAGATTATAAAAATCATGTTTTTGTTTTATGTGAGTAGTTCCCTTCTTAACATGGTTAGTTCTTCTCATCAGAGGCTTGGTTTATGAGTACTGACTTTGTGATTACCGTTGCTTGCCAAATTCTCCTATTCATGGTAATTCTTGTGTAGGTCTGCCATGGATGCTGAAATTATGAAGTATGTGAGTGAAACATATCCAAAAGGCATCTGTTCAGTTTACTGTACGAAGGGAAAGGATGTGGAAGAGCCAGGATTTGACTTTGAACTTGTTGTGGTGATTTCAGCT</genome_strand>
        <mrna_strand>AATCAGAAACTCAACTTACCGATGACCAGAAAATTGAGATTGCCAAATGGTTCCTTCTTAATGCCCCCGCCGGCGAAATTCAGTACGTCGCCAAAG................................................................................................................................................................ATGTTAGAGCCATTTTAAAGGACGAAAATATATATAAGAAAGCGGCCGAGGAGTCATTTCCTTCGTACAACAAATCTCACTTGATTTGTCTCGAATTCCCAAACAGAAGTGGCGAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGATTACATCCTTCAGTGAGGTTGATAAGGATGAGTATCTTGATCCCCGAACTGCCCAGGTTGCCAGAGTTGACCATGTCAAGCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTAAAGATGTTAGGCCAGCAAGAGATGAAGAACTTCCATCTGCTTTCGTGGAAGAATATAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGCCATGGATGCTGAAATTATGAAGTATGTGAGTGAAACATATCCAAAAGGCATCAGTTCAGTTTACTGTACGAAGGGAAAGGATGTGGAAGAGCCAGGATTCGACTTTGAACTTGTTGTGGTGATTTCAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E321831" ref_strand="+" ref_description="SGN-E321831 [cTOB-25-J10]">
      <seq>tctggtggggttatggtatcttcttcgaatttgaattgaattgaattcaatggagaagaatatctgttaataagataaaaatgttagaagaagacgaagattttctggaatcagaaactcaacttaccgatgaccagaaaattgagattgccaaatggttccttcttaatgcccccgccggcgaaattcagtacgtcgccaaagatgttagagccattttaaaggacgaaaatatatataagaaagcggccgaggagtcatttccttcgtacaacaaatctcacttgatttgtctcgaattcccaaacagaagtggcgatgtactgattacatccttcagtgaggttgataaggatgagtatcttgatccccgaactgcccaggttgccagagttgaccatgtcaagcaagtttgtaaagatgttaggccagcaagagatgaagaacttccatctgctttcgtggaagaatataggtctgccatggatgctgaaattatgaagtatgtgagtgaaacatatccaaaaggcatcagttcagtttactgtacgaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="53109" stop="48889"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52809" g_stop="52588" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="0.901"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52587" i_stop="52428" i_length="160">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52427" g_stop="52312" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="320" r_length="116" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52311" i_stop="51576" i_length="736">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51575" g_stop="51486" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="410" r_length="90" r_score="0.944"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51485" i_stop="50208" i_length="1278">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50207" g_stop="50143" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="475" r_length="65" r_score="0.969"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="50142" i_stop="49269" i_length="874">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49268" g_stop="49189" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="555" r_length="80" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E321831" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.032" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321831" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52809" e_stop="52588"/>
          <exon e_start="52427" e_stop="52312"/>
          <exon e_start="51575" e_stop="51486"/>
          <exon e_start="50207" e_stop="50143"/>
          <exon e_start="49268" e_stop="49189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGGTGGGGTTGATGGTATCTTCTTCGAATTTGAATTGAATTGAATTCAATGGAGAAGAATATCTGTTAATAAGATTGCAAAAAATAAATGATAAAAATGTTAGAAGAAGACGAAGATTTCCTGGAATCAGAAACACAACTTACTGATGACCAGAAAATTGAGATTGCCAAATGGTTCCTTCTTAATGCCCCAGCCGGCGAAATTCAGTACGTCGCCAAAGGTCTTCTTCTTCTTCTCTTTCGTTTATTTTCTGCGCTAAAGTTTTTTGTATTTTGAAGCTTTTTTCGTGCTTGAAAATGTGACCGCATTGGTGTTCATTTGCGATCGGCAGTTTATTTTTTACATTTTTGGTTTTGAGCGTCATTTGGTTGGATTTGCAGATGTTAGAGCTATTTTAAAGGACGAAAATATATATAAGAAAGCGGCCGAGGAGTCATTTCCTTCGTACAACAAATCTCACTTGATTTGTCTCGAATTCCCAAACAGAAGTGGCGATGTAAGTCTCTCTCTTGTTTTCTTTTTTCATTGGGTAAGTTAGATCTTTGAAAATGTAAGTTAGACTAATCGTGTCATTCAAATTGATAATTTCAGATTTGACAGTTTTCCGTAGTCGAAGATTGAAATATTAAGTGAACTGTAAGCAATACTTATTGTACTGATGTTGTAATTTTCCTTAGTTGATAATTTCAGATTTGGTAGTTTTCGGTAGTTGAAGATAAAAAATGAGGTAAATTGGAAGCAATATGATGTTGCAATTTCCTTACTTGGTTCATGACCTCTCTAGGCATCCTTTAGAGCTCAAAGACTGAATGAAAACAAAGGATAAAAGTTATGCTTGAGAAACTTTTCAAAAAAAAAGTTGCATGAGAAATAAGTAAGATTAATCTAATAAGTCTTCAAGTAAAGCTTTTAGGATAGAGATATACTTCATGGTACTTGGATGCTGGCGCTACTATATATGAATGAGTTGGGTGTTGTTTGTTGAGCACCATGTTTATGGACAAGTTCTCTACATCTGTTTAAAGCTTAGGGAATTTCCACCACTTCAATAAATGATTACTTCTTCAATATAGAAAAGAAAACTTTCCGGAGAACTGTTCCTTATGAAGTCTAAGATTTTGTTCCCCTCTTCTAAAAAGAAAGTATAATGCTTTTCATTTATGTAGTAATGGACACTTGGAAGCTATTTTTCATGATCTAGCTGTGTAAAGTTGCTGTTCACTAATTTGTAGGTACTGATTACATCATTTAGTGAGGTTCATAAGGATGAGTATCTTGATCCCCGGACTGCGCAGGTTGCCAGAGTTGACCATGTCAAGCAAGTACGTTGTTCAGTTAGTACACAATGCAAAATGCTATTTTTGGATTTTTTACAGTTTGGTGTTTTGACTTTCTTCTTGTTGATAAGATTAATAATTTCATTGGATGAGGCACCTCCTTCCATGTGCCACTAACAAACTACCTTGCAAAAACACAAAAGCACCAAAAATGGTGCTGGAATTTATCATCAAATCCCCAGTCCCTTAATTCCCCAATAGTTGCATGATATGTAAGTTTAAAAGCTCATAATCTTGAAGGGAATCATTTAATAACTTCTATTATCTTTTTATGATTGAAAAGTCCATTTCACTGTTCCTATCAGTTGAGCCGACAGAATTTAATAAATGATAATCTAAAGTGACTATGAAAAACTTATCTTTTTCTTTCTTTTTTTTCGGGGCATGGAGTGGTGGGATCCATAGAAGAGGAAGCAGGTTTGTAAGGATGAGTATTTTGTTTAGAAGGTAATTCAAAAAAGCAATAATATGGACAGACATAAACCTGGTAGAGATGGTGGGACTATATCCAAAAATGTGCTTATTCTGAAAGAAAGGAAAAGAAAAGTAAAAAGATCAGGACGAAGTAAGAAAAAAAGAAAGAGAAGCACATATAGTGCCGGGGGTACTCCTTTTTATGCTGTGCAATTAAAAATCTCTACATAAACTGGTTTTATGCTCATGTTGTTTATCTATAGTTTAGTATGTTTAGACATCTTCTGGCTGATTGGAACTTGATTAGTTAAACACACTCAGGCATTAGGGATAAAGAACAAAACACCAGAGTGAATTGTGTTAACTGTTAGGTTGGTTTTCATGATAGAAGTGGATACCAAGAATGAAGAAATTGTAAACTTGAAAAATGTGCTTTGATATAGCAAGCTCTTGATTAACCTCATTATTCAATAGTTATGAACTTCACATAAGATGCATTTTTTATTCTTGTTAATGGTGATGGAGTAAATACCAATTTTGGAAAAGTAAAATAAGGTCTCTTCTGCTATAGCTGGTCCATGGTTGTAAATTAATCCTCATTAGTCTACAGTGCTGAATGTCACATAACATGCATTTCTTTTCTATTCTTGTTAATGTGATGAAGTAGATGTAAATAGATTGGAAAAGTGGAAGTAGTCTCTGCTTAATATAACAAGTGCATGGTTTTATTCATAATTCAAGGGCTGTGAAATTAAATGTATTTCCTCTCTCTCTTTTTTTCCTAGTTATTGTTGCCGTGTAATAATTTATGCTCCCTTCTTGTAAGCTCATGGTATGTCTGCATTCTAGGTTTGTAAAGACGTTAGGCCAGCAAGAGATGAAGAACTTCCATCTGCTTTCGTGGAAGAGTATAGGTATGCATCTGTAGGGTATGAGATATATTTCTCAGTTTAATATCTTTGGTATTGCTCCCCTTTTTAGCTACTCACTTTCTGTTTTTCCCATTGAGATGTTGAAGTTCTTCTATATTATGACATTCACAATTATTTTGCCTAATTGGACTTATTTTTTAACCATGCTCAACAAGACTTGCAAATTCAACCTCAGTTCTCAGACAGCACTCAGATTATAGTTTAAGATATGCTAGAACAGTTGCATTTCTTGTGGAAATTGTCTTTCCGGCTTAATTGAAAAAAAAGCTGCATGTTTTGGTCTGCGCTCACCGAAATCAGTCTGAAAATAAATAGTTTAGGCTAATCTCTCCTATATAGATGCTCTTCTTCTTAATCAGTATCATTTGTTCTCTGTCCTTCTATATTACATTCTATGTCTTATCTTTCGGGATATTCTTAGTAATCTTCGCCTCAGTCCTCAAGTGTTAATAAGATCCTACATCATGATTCATGTGTGTTTTTATTCCATAAAGAGATCTGATTCATAATACACTGGTTTACCTTTTTGTTCATCTTTATCGGTGAGGAACCAGTGTCTCCAAATTAATGGGTAATGACATCAATGTCAGATACTAAAATGGTAGTAAGACACCTAAATTTGGTATAATTGGGAGGCATTAAGAGTATGAAAGGATTATATTCTGAGATCGCAGTGAATTCTTCAATAGTTCCTAATGCTTGGCATGCAGATTATAAAAATCATGTTTTTGTTTTATGTGAGTAGTTCCCTTCTTAACATGGTTAGTTCTTCTCATCAGAGGCTTGGTTTATGAGTACTGACTTTGTGATTACCGTTGCTTGCCAAATTCTCCTATTCATGGTAATTCTTGTGTAGGTCTGCCATGGATGCTGAAATTATGAAGTATGTGAGTGAAACATATCCAAAAGGCATCTGTTCAGTTTACTGTACGAAGG</genome_strand>
        <mrna_strand>TCTGGTGGGGTT-ATGGTATCTTCTTCGAATTTGAATTGAATTGAATTCAATGGAGAAGAATATCTGTTAATAAGAT-----------------AAAAATGTTAGAAGAAGACGAAGATTTTCTGGAATCAGAAACTCAACTTACCGATGACCAGAAAATTGAGATTGCCAAATGGTTCCTTCTTAATGCCCCCGCCGGCGAAATTCAGTACGTCGCCAAAG................................................................................................................................................................ATGTTAGAGCCATTTTAAAGGACGAAAATATATATAAGAAAGCGGCCGAGGAGTCATTTCCTTCGTACAACAAATCTCACTTGATTTGTCTCGAATTCCCAAACAGAAGTGGCGAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGATTACATCCTTCAGTGAGGTTGATAAGGATGAGTATCTTGATCCCCGAACTGCCCAGGTTGCCAGAGTTGACCATGTCAAGCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTAAAGATGTTAGGCCAGCAAGAGATGAAGAACTTCCATCTGCTTTCGTGGAAGAATATAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGCCATGGATGCTGAAATTATGAAGTATGTGAGTGAAACATATCCAAAAGGCATCAGTTCAGTTTACTGTACGAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E469535" ref_strand="+" ref_description="SGN-E469535 [cSTB-12-K11]">
      <seq>ggaatcagaaactcaacttaccgatgaccagaaaattgagattgccaaatggttccttcttaatgcccccgctggcgaaattcagtacgtcgccaaagatgttagagctattttaaaggacgaaaatatatataagaaagcggccgaggagtcatttccttcttacaacaaatctcacttgatttgtctcgaattcccaaacagaagtggcgatgtactgattacatcatttagtgaggttgataaggatgagtatcttgatccccggactgcccaggttgccagagttgaccatgtcaagcaagtttgtaaagacgttaggccagcaagagatgaagaacttccatctgctttcgtggaagagtataggtctgccatggatgctgaaattatgaagtatgtgagtgaaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="52985" stop="48925"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52685" g_stop="52588" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52587" i_stop="52428" i_length="160">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52427" g_stop="52312" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="214" r_length="116" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52311" i_stop="51576" i_length="736">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51575" g_stop="51486" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="304" r_length="90" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51485" i_stop="50208" i_length="1278">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50207" g_stop="50143" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="369" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="50142" i_stop="49269" i_length="874">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49268" g_stop="49225" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="413" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E469535" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E469535" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52685" e_stop="52588"/>
          <exon e_start="52427" e_stop="52312"/>
          <exon e_start="51575" e_stop="51486"/>
          <exon e_start="50207" e_stop="50143"/>
          <exon e_start="49268" e_stop="49225"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAATCAGAAACACAACTTACTGATGACCAGAAAATTGAGATTGCCAAATGGTTCCTTCTTAATGCCCCAGCCGGCGAAATTCAGTACGTCGCCAAAGGTCTTCTTCTTCTTCTCTTTCGTTTATTTTCTGCGCTAAAGTTTTTTGTATTTTGAAGCTTTTTTCGTGCTTGAAAATGTGACCGCATTGGTGTTCATTTGCGATCGGCAGTTTATTTTTTACATTTTTGGTTTTGAGCGTCATTTGGTTGGATTTGCAGATGTTAGAGCTATTTTAAAGGACGAAAATATATATAAGAAAGCGGCCGAGGAGTCATTTCCTTCGTACAACAAATCTCACTTGATTTGTCTCGAATTCCCAAACAGAAGTGGCGATGTAAGTCTCTCTCTTGTTTTCTTTTTTCATTGGGTAAGTTAGATCTTTGAAAATGTAAGTTAGACTAATCGTGTCATTCAAATTGATAATTTCAGATTTGACAGTTTTCCGTAGTCGAAGATTGAAATATTAAGTGAACTGTAAGCAATACTTATTGTACTGATGTTGTAATTTTCCTTAGTTGATAATTTCAGATTTGGTAGTTTTCGGTAGTTGAAGATAAAAAATGAGGTAAATTGGAAGCAATATGATGTTGCAATTTCCTTACTTGGTTCATGACCTCTCTAGGCATCCTTTAGAGCTCAAAGACTGAATGAAAACAAAGGATAAAAGTTATGCTTGAGAAACTTTTCAAAAAAAAAGTTGCATGAGAAATAAGTAAGATTAATCTAATAAGTCTTCAAGTAAAGCTTTTAGGATAGAGATATACTTCATGGTACTTGGATGCTGGCGCTACTATATATGAATGAGTTGGGTGTTGTTTGTTGAGCACCATGTTTATGGACAAGTTCTCTACATCTGTTTAAAGCTTAGGGAATTTCCACCACTTCAATAAATGATTACTTCTTCAATATAGAAAAGAAAACTTTCCGGAGAACTGTTCCTTATGAAGTCTAAGATTTTGTTCCCCTCTTCTAAAAAGAAAGTATAATGCTTTTCATTTATGTAGTAATGGACACTTGGAAGCTATTTTTCATGATCTAGCTGTGTAAAGTTGCTGTTCACTAATTTGTAGGTACTGATTACATCATTTAGTGAGGTTCATAAGGATGAGTATCTTGATCCCCGGACTGCGCAGGTTGCCAGAGTTGACCATGTCAAGCAAGTACGTTGTTCAGTTAGTACACAATGCAAAATGCTATTTTTGGATTTTTTACAGTTTGGTGTTTTGACTTTCTTCTTGTTGATAAGATTAATAATTTCATTGGATGAGGCACCTCCTTCCATGTGCCACTAACAAACTACCTTGCAAAAACACAAAAGCACCAAAAATGGTGCTGGAATTTATCATCAAATCCCCAGTCCCTTAATTCCCCAATAGTTGCATGATATGTAAGTTTAAAAGCTCATAATCTTGAAGGGAATCATTTAATAACTTCTATTATCTTTTTATGATTGAAAAGTCCATTTCACTGTTCCTATCAGTTGAGCCGACAGAATTTAATAAATGATAATCTAAAGTGACTATGAAAAACTTATCTTTTTCTTTCTTTTTTTTCGGGGCATGGAGTGGTGGGATCCATAGAAGAGGAAGCAGGTTTGTAAGGATGAGTATTTTGTTTAGAAGGTAATTCAAAAAAGCAATAATATGGACAGACATAAACCTGGTAGAGATGGTGGGACTATATCCAAAAATGTGCTTATTCTGAAAGAAAGGAAAAGAAAAGTAAAAAGATCAGGACGAAGTAAGAAAAAAAGAAAGAGAAGCACATATAGTGCCGGGGGTACTCCTTTTTATGCTGTGCAATTAAAAATCTCTACATAAACTGGTTTTATGCTCATGTTGTTTATCTATAGTTTAGTATGTTTAGACATCTTCTGGCTGATTGGAACTTGATTAGTTAAACACACTCAGGCATTAGGGATAAAGAACAAAACACCAGAGTGAATTGTGTTAACTGTTAGGTTGGTTTTCATGATAGAAGTGGATACCAAGAATGAAGAAATTGTAAACTTGAAAAATGTGCTTTGATATAGCAAGCTCTTGATTAACCTCATTATTCAATAGTTATGAACTTCACATAAGATGCATTTTTTATTCTTGTTAATGGTGATGGAGTAAATACCAATTTTGGAAAAGTAAAATAAGGTCTCTTCTGCTATAGCTGGTCCATGGTTGTAAATTAATCCTCATTAGTCTACAGTGCTGAATGTCACATAACATGCATTTCTTTTCTATTCTTGTTAATGTGATGAAGTAGATGTAAATAGATTGGAAAAGTGGAAGTAGTCTCTGCTTAATATAACAAGTGCATGGTTTTATTCATAATTCAAGGGCTGTGAAATTAAATGTATTTCCTCTCTCTCTTTTTTTCCTAGTTATTGTTGCCGTGTAATAATTTATGCTCCCTTCTTGTAAGCTCATGGTATGTCTGCATTCTAGGTTTGTAAAGACGTTAGGCCAGCAAGAGATGAAGAACTTCCATCTGCTTTCGTGGAAGAGTATAGGTATGCATCTGTAGGGTATGAGATATATTTCTCAGTTTAATATCTTTGGTATTGCTCCCCTTTTTAGCTACTCACTTTCTGTTTTTCCCATTGAGATGTTGAAGTTCTTCTATATTATGACATTCACAATTATTTTGCCTAATTGGACTTATTTTTTAACCATGCTCAACAAGACTTGCAAATTCAACCTCAGTTCTCAGACAGCACTCAGATTATAGTTTAAGATATGCTAGAACAGTTGCATTTCTTGTGGAAATTGTCTTTCCGGCTTAATTGAAAAAAAAGCTGCATGTTTTGGTCTGCGCTCACCGAAATCAGTCTGAAAATAAATAGTTTAGGCTAATCTCTCCTATATAGATGCTCTTCTTCTTAATCAGTATCATTTGTTCTCTGTCCTTCTATATTACATTCTATGTCTTATCTTTCGGGATATTCTTAGTAATCTTCGCCTCAGTCCTCAAGTGTTAATAAGATCCTACATCATGATTCATGTGTGTTTTTATTCCATAAAGAGATCTGATTCATAATACACTGGTTTACCTTTTTGTTCATCTTTATCGGTGAGGAACCAGTGTCTCCAAATTAATGGGTAATGACATCAATGTCAGATACTAAAATGGTAGTAAGACACCTAAATTTGGTATAATTGGGAGGCATTAAGAGTATGAAAGGATTATATTCTGAGATCGCAGTGAATTCTTCAATAGTTCCTAATGCTTGGCATGCAGATTATAAAAATCATGTTTTTGTTTTATGTGAGTAGTTCCCTTCTTAACATGGTTAGTTCTTCTCATCAGAGGCTTGGTTTATGAGTACTGACTTTGTGATTACCGTTGCTTGCCAAATTCTCCTATTCATGGTAATTCTTGTGTAGGTCTGCCATGGATGCTGAAATTATGAAGTATGTGAGTGAAACAT</genome_strand>
        <mrna_strand>GGAATCAGAAACTCAACTTACCGATGACCAGAAAATTGAGATTGCCAAATGGTTCCTTCTTAATGCCCCCGCTGGCGAAATTCAGTACGTCGCCAAAG................................................................................................................................................................ATGTTAGAGCTATTTTAAAGGACGAAAATATATATAAGAAAGCGGCCGAGGAGTCATTTCCTTCTTACAACAAATCTCACTTGATTTGTCTCGAATTCCCAAACAGAAGTGGCGAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGATTACATCATTTAGTGAGGTTGATAAGGATGAGTATCTTGATCCCCGGACTGCCCAGGTTGCCAGAGTTGACCATGTCAAGCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTAAAGACGTTAGGCCAGCAAGAGATGAAGAACTTCCATCTGCTTTCGTGGAAGAGTATAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGCCATGGATGCTGAAATTATGAAGTATGTGAGTGAAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E313375" ref_strand="+" ref_description="SGN-E313375 [cTOA-13-A17]">
      <seq>aaaagagatgggaaagcgactctgggggggttatggtagcttcttcgaattcgaattgaattgaattcaatggagaagaatatctgttaataagataaaaatgttagaagaagacgaagattttctggaatcagaaactcaacttaccgatgaccagaaaattgagattgccaaatggttccttcttaatgcccccgccggcgaaattcagtacgtcgccaaagatgttagagccattttaaaggacgaaaatatatataagaaagcggccgaggagtcatttccttcgtacaacaaatctcacttgatttgtctcgaattcccaaacagaagtggcgatgtactgattacatccttcagtgaggttgataaggatgagtatcttgatccccgaactgcccaggttgccagagttgaccatgtcaagcaagtttgtaaagatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="53129" stop="51180"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52829" g_stop="52588" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="224" r_length="224" r_score="0.893"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52587" i_stop="52428" i_length="160">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52427" g_stop="52312" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="340" r_length="116" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52311" i_stop="51576" i_length="736">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51575" g_stop="51486" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="430" r_length="90" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E313375" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313375" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52829" e_stop="52588"/>
          <exon e_start="52427" e_stop="52312"/>
          <exon e_start="51575" e_stop="51486"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGAGAGGGGAAAGCGACTCTGGTGGGGTTGATGGTATCTTCTTCGAATTTGAATTGAATTGAATTCAATGGAGAAGAATATCTGTTAATAAGATTGCAAAAAATAAATGATAAAAATGTTAGAAGAAGACGAAGATTTCCTGGAATCAGAAACACAACTTACTGATGACCAGAAAATTGAGATTGCCAAATGGTTCCTTCTTAATGCCCCAGCCGGCGAAATTCAGTACGTCGCCAAAGGTCTTCTTCTTCTTCTCTTTCGTTTATTTTCTGCGCTAAAGTTTTTTGTATTTTGAAGCTTTTTTCGTGCTTGAAAATGTGACCGCATTGGTGTTCATTTGCGATCGGCAGTTTATTTTTTACATTTTTGGTTTTGAGCGTCATTTGGTTGGATTTGCAGATGTTAGAGCTATTTTAAAGGACGAAAATATATATAAGAAAGCGGCCGAGGAGTCATTTCCTTCGTACAACAAATCTCACTTGATTTGTCTCGAATTCCCAAACAGAAGTGGCGATGTAAGTCTCTCTCTTGTTTTCTTTTTTCATTGGGTAAGTTAGATCTTTGAAAATGTAAGTTAGACTAATCGTGTCATTCAAATTGATAATTTCAGATTTGACAGTTTTCCGTAGTCGAAGATTGAAATATTAAGTGAACTGTAAGCAATACTTATTGTACTGATGTTGTAATTTTCCTTAGTTGATAATTTCAGATTTGGTAGTTTTCGGTAGTTGAAGATAAAAAATGAGGTAAATTGGAAGCAATATGATGTTGCAATTTCCTTACTTGGTTCATGACCTCTCTAGGCATCCTTTAGAGCTCAAAGACTGAATGAAAACAAAGGATAAAAGTTATGCTTGAGAAACTTTTCAAAAAAAAAGTTGCATGAGAAATAAGTAAGATTAATCTAATAAGTCTTCAAGTAAAGCTTTTAGGATAGAGATATACTTCATGGTACTTGGATGCTGGCGCTACTATATATGAATGAGTTGGGTGTTGTTTGTTGAGCACCATGTTTATGGACAAGTTCTCTACATCTGTTTAAAGCTTAGGGAATTTCCACCACTTCAATAAATGATTACTTCTTCAATATAGAAAAGAAAACTTTCCGGAGAACTGTTCCTTATGAAGTCTAAGATTTTGTTCCCCTCTTCTAAAAAGAAAGTATAATGCTTTTCATTTATGTAGTAATGGACACTTGGAAGCTATTTTTCATGATCTAGCTGTGTAAAGTTGCTGTTCACTAATTTGTAGGTACTGATTACATCATTTAGTGAGGTTCATAAGGATGAGTATCTTGATCCCCGGACTGCGCAGGTTGCCAGAGTTGACCATGTCAAGCAA</genome_strand>
        <mrna_strand>AAAAGAGATGGGAAAGCGACTCTGGGGGGGTT-ATGGTAGCTTCTTCGAATTCGAATTGAATTGAATTCAATGGAGAAGAATATCTGTTAATAAGA-T------AA-AAATG-T--------TAGAAGAAGACGAAGATTTTCTGGAATCAGAAACTCAACTTACCGATGACCAGAAAATTGAGATTGCCAAATGGTTCCTTCTTAATGCCCCCGCCGGCGAAATTCAGTACGTCGCCAAAG................................................................................................................................................................ATGTTAGAGCCATTTTAAAGGACGAAAATATATATAAGAAAGCGGCCGAGGAGTCATTTCCTTCGTACAACAAATCTCACTTGATTTGTCTCGAATTCCCAAACAGAAGTGGCGAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGATTACATCCTTCAGTGAGGTTGATAAGGATGAGTATCTTGATCCCCGAACTGCCCAGGTTGCCAGAGTTGACCATGTCAAGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E211635" ref_strand="+" ref_description="SGN-E211635 [cLEC-67-H19]">
      <seq>gaaaagagtgaatagctctttagctttcaaatctgacttagacttcttcagacattctttgatgtgtatttcatctttatattctccttatcttttatcaaattaaacgatataacaaacaacaatgtcaggcacatgtccgtgcctcgcacgggcacactacatctagtaacaaaagagaggggaaagcgactctggtggggttgatggtatcttcttcgaatttgaattgaattgaattcaatggagaagaatatctgttaataagattgcaaaaaataaatgataaaaatgttagaagaagacgaagatttcctggaatcagaaacacaacttactgatgaccagaaaattgagattgccaaatggttccttcttaatgccccagccggcgaaattcagtacgtcgccaaagatgttagagctattttaaaggacgaaaatatatataagaaagcggccgaggagtcatttccttcgtacaacaaatctcacttgatttgtctcgaattcccaaacagaagtggcgatgtactgattacatcatttagtgaggttcataaggatgagtatcttgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="53302" stop="51227"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53002" g_stop="52588" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="415" r_length="415" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52587" i_stop="52428" i_length="160">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52427" g_stop="52312" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="531" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52311" i_stop="51576" i_length="736">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51575" g_stop="51527" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="580" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E211635" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211635" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53002" e_stop="52588"/>
          <exon e_start="52427" e_stop="52312"/>
          <exon e_start="51575" e_stop="51527"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAGAGTGAATAGCTCTTTAGCTTTCAAATCTGACTTAGACTTCTTCAGACATTCTTTGATGTGTATTTCATCTTTATATTCTCCTTATCTTTTATCAAATTAAACGATATAACAAACAACAATGTCAGGCACATGTCCGTGCCTCGCACGGGCACACTACATCTAGTAACAAAAGAGAGGGGAAAGCGACTCTGGTGGGGTTGATGGTATCTTCTTCGAATTTGAATTGAATTGAATTCAATGGAGAAGAATATCTGTTAATAAGATTGCAAAAAATAAATGATAAAAATGTTAGAAGAAGACGAAGATTTCCTGGAATCAGAAACACAACTTACTGATGACCAGAAAATTGAGATTGCCAAATGGTTCCTTCTTAATGCCCCAGCCGGCGAAATTCAGTACGTCGCCAAAGGTCTTCTTCTTCTTCTCTTTCGTTTATTTTCTGCGCTAAAGTTTTTTGTATTTTGAAGCTTTTTTCGTGCTTGAAAATGTGACCGCATTGGTGTTCATTTGCGATCGGCAGTTTATTTTTTACATTTTTGGTTTTGAGCGTCATTTGGTTGGATTTGCAGATGTTAGAGCTATTTTAAAGGACGAAAATATATATAAGAAAGCGGCCGAGGAGTCATTTCCTTCGTACAACAAATCTCACTTGATTTGTCTCGAATTCCCAAACAGAAGTGGCGATGTAAGTCTCTCTCTTGTTTTCTTTTTTCATTGGGTAAGTTAGATCTTTGAAAATGTAAGTTAGACTAATCGTGTCATTCAAATTGATAATTTCAGATTTGACAGTTTTCCGTAGTCGAAGATTGAAATATTAAGTGAACTGTAAGCAATACTTATTGTACTGATGTTGTAATTTTCCTTAGTTGATAATTTCAGATTTGGTAGTTTTCGGTAGTTGAAGATAAAAAATGAGGTAAATTGGAAGCAATATGATGTTGCAATTTCCTTACTTGGTTCATGACCTCTCTAGGCATCCTTTAGAGCTCAAAGACTGAATGAAAACAAAGGATAAAAGTTATGCTTGAGAAACTTTTCAAAAAAAAAGTTGCATGAGAAATAAGTAAGATTAATCTAATAAGTCTTCAAGTAAAGCTTTTAGGATAGAGATATACTTCATGGTACTTGGATGCTGGCGCTACTATATATGAATGAGTTGGGTGTTGTTTGTTGAGCACCATGTTTATGGACAAGTTCTCTACATCTGTTTAAAGCTTAGGGAATTTCCACCACTTCAATAAATGATTACTTCTTCAATATAGAAAAGAAAACTTTCCGGAGAACTGTTCCTTATGAAGTCTAAGATTTTGTTCCCCTCTTCTAAAAAGAAAGTATAATGCTTTTCATTTATGTAGTAATGGACACTTGGAAGCTATTTTTCATGATCTAGCTGTGTAAAGTTGCTGTTCACTAATTTGTAGGTACTGATTACATCATTTAGTGAGGTTCATAAGGATGAGTATCTTGATC</genome_strand>
        <mrna_strand>GAAAAGAGTGAATAGCTCTTTAGCTTTCAAATCTGACTTAGACTTCTTCAGACATTCTTTGATGTGTATTTCATCTTTATATTCTCCTTATCTTTTATCAAATTAAACGATATAACAAACAACAATGTCAGGCACATGTCCGTGCCTCGCACGGGCACACTACATCTAGTAACAAAAGAGAGGGGAAAGCGACTCTGGTGGGGTTGATGGTATCTTCTTCGAATTTGAATTGAATTGAATTCAATGGAGAAGAATATCTGTTAATAAGATTGCAAAAAATAAATGATAAAAATGTTAGAAGAAGACGAAGATTTCCTGGAATCAGAAACACAACTTACTGATGACCAGAAAATTGAGATTGCCAAATGGTTCCTTCTTAATGCCCCAGCCGGCGAAATTCAGTACGTCGCCAAAG................................................................................................................................................................ATGTTAGAGCTATTTTAAAGGACGAAAATATATATAAGAAAGCGGCCGAGGAGTCATTTCCTTCGTACAACAAATCTCACTTGATTTGTCTCGAATTCCCAAACAGAAGTGGCGAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGATTACATCATTTAGTGAGGTTCATAAGGATGAGTATCTTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E377594" ref_strand="+" ref_description="SGN-E377594 [TUS-20-P17]">
      <seq>ttctgcccagtttcggagacggaaattcctcatagatttgctcctacgaacaaaaagatgcaaggtgtgttgaaatttctgaagttgtctgctccggatgcttctttggtttgcaatgtctgttgaaatttgtgaagttggcttctccaaatacttctctggtttcttattttttatacactaattggctggcacatgtccgtgcctcgcacgggcacactacatctagtaacaaaagagaggggaaagcgactctggtggggttgatggtatcttcttcgaatttgaattgaattgaattcaatggagaagaatatctgttaataagattgcaaaaaataaatgataaaaatgttagaagaagacgaagatttcctggaatcagaaacacaacttactgatgaccagaaaattgagattgccaaatggttccttcttaatgccccagccggcgaaattcagtacgtcgccaaagatgttagagctattttaaaggacgaaaatatatataagaaagcggccgaggagtcatttccttcgtacaacaaatctcacttgatttgtctcgaattcccaaacagaagtggcgatatttgacagttttccgtagtcgaagattgaaatattaagtgaactgtactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="56293" stop="51869"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55993" g_stop="55937" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55936" i_stop="53185" i_length="2752">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53184" g_stop="53051" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="191" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53050" i_stop="52872" i_length="179">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.912" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52871" g_stop="52588" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="475" r_length="284" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52587" i_stop="52428" i_length="160">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52427" g_stop="52312" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="591" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52311" i_stop="52217" i_length="95">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.821" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52216" g_stop="52172" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="592" r_stop="636" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E377594" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E377594" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55993" e_stop="55937"/>
          <exon e_start="53184" e_stop="53051"/>
          <exon e_start="52871" e_stop="52588"/>
          <exon e_start="52427" e_stop="52312"/>
          <exon e_start="52216" e_stop="52172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTGCCCAGTTTCGGAGACGGAAATTCCTCATAGATTTGCTCCTACGAACAAAAAGGTACACTCCTTTGTTTGGTTTGTTGCTTGCTTCTCATTCGTTGATCTTCTGGGTTTTCCTTCCAATCGGATCTACCAAATTCGCCTTCATTTGCTTGATTTATGTGTTGTTTAATCATTAATGTTGTATTTGCTAATATGAATTGTTACCTGCCGCTTAGACTTAGTGTTAATTTGGTTGGTTTGTTGAATCCGCAAAATATCTCTTGCACTTTGGTTTACTCGCTTTGCTTCTTCATTTCAGTATTCCCAATTTGTAATCATTATAGCTTGCTAAAATTAGTTGTTTTGCTATGTGTTTCAACATCCACGGAAAGGGCTCTGCGCTCTGGATCTAAAATTTTCTCCGCTGCTATTCTAGAATGTTTACTTTTATACTATGTGTGTCAGTTTGATTTCTTGGCTAAATTCAGAAAAGAAGGATTTTCTGCTGATTTAGCCGACCACAGAAGCTTTAACTTGAGTAGTTGTGATATTGGTTTGTGGTTCTAACTACAGTATTACTGATTTTTGTTAAAACTATGGAAAGGTAGGCGATTACTTGCACTTACGCCTATACTCCTCATGTTTACCTCCACCTTTTGATAGTACAAGCTATATGATAGAATTGATGGCCTTGAGGTGTTTGATATAATTGATATAAAGTTATGTATATACAATTATTTTAGAAATAAAACATAGTTAAGCATTTGATTTGTTAAATTTATCATGCTCACTACGTGTTCGACAATTTGTTTGGAAGAAAAAATGGAGTATTCATCAATAATAATAAAATGTTTAAAACATATGAATACTCAAGACTGAACTAACTCACTAACTTGTCTATCTATGTGACCTCTACTAACTGAACTACTAAACTAGAGCCCTCCAGAGAGTGAAGAGGTCTCACGAAATATATTCTGTAATACCCAAACACATTTACTACCCATGGGGATCCCCGAGTAGTTTACCAGACAAATTGAGTTGTGGGCAACATCGAAGATTCTCTTCACCATCTAGGCTATGGAAGAGATTACTATAGAGATAGATGAAAGATTGTTTAGTCAATGGGTGTGAATTATCACTACACTTGCAACTACTATGTCGTAGTCGATATGAACTTAGTATATGTGTATTTTAAATTGCTCAAATTAGTGTATAGAGAGTTGAGGGTGGTACGGCTGCCACACCACATCTTACCTGGGGTTGGTGATAGTTTCACAGATTACTTTGACTGTAGTTTGATATATAATATCTGATGCTTTTGTTTTGTGAGTATCAGAATGAACTGTCTTTGTTTCGATTTTACTTCCTTATGATTAATCCTCTTCTTTCGTCTTTAAATATTGACATATTAGGCATGCTTTGACTGTCCTATCATTACGTACTTCTTGTGCTAGAAGATGTAACATTCTTCACCTTTTTGGTTTGCCTCCTGTAACGTGAAAATTTTTTGGTAGATAATTGAACATAACAGGCTGTGTTATCCTTATAGATGTTAACAAACAGCATATCTTGAGCCCATATGCAATATTGCGAGGTGCTGATAAAGTTTCATTATTACGTACGTGTGATCATATGAATAAATCTGAACGTGTAGTTGAACAGAAGGAACACTTCTCTAAGTGAAGCGAAGGAAAAAGCTCTCTAAGAGCAAAAAATTTATTCGAAGAGAACAACTTCTATGTGGAAGTCAATAGTCCAGAATGTACATAATAGTAAGTTCTTAAATGAACTACTAAGCATCATTAGCAGCTGAGGCAAAATATAGACATCTAAATATCAAAATAATACGATCGTGTGAATTGGAGTTTCTTTAAGGATATTGAAGCTCGTGGGATTCAGGCAAAAGTAAGTAAGTTGGAACAGTATGTGCATCTATGCTATCAAACTATCAATTGTAGTTTATTTCAGCAGAGGAGTTTTCTCCCCTCATAGAGGATACGCAAGGAGACCATTGTCTTTTTTTTTTTGCTTTAATGATGAATGGAGGATCAGAACAAAATGCTGAAATAAGCTGTACAATTGAGCTGGATTAGGGGTTATTAGGTGGGCAGGAAGGAAAAATAACTGAAGTGGTGTCTCAACTCTCATAAATTATGCTAATGACACACTGATAATGCGTGTCCAGCAGACGGGACAGTTGGAGTATTTTAGAGTAATGTAGTTATTTTTATGGCTTGGTGCTTGAGGTGTTAAATGGTTTTGTAAAAATTGATGTTTTAATTCAATTTTTACGATTTGCACCTTTTCTGATTGGAAGAAATATATATGGTTAGTCAAATTCTGCCTAAGTTTCATCACAAGTTCATGTAATAACAACAGTGACAACAGTAAGAAAGAATATTAGTTTATTCAGTGGTGTTGGCTGGGAAGATGATGTCTTGCATCATGTAAATGGCAATGGAGAAGTCTTGATTTGAGTAGTAAGAAGTAACAAAGCGTACATGGGGGGATCTTGCCCCTGTTACCCTTACCCTCGACTATCTTTGGTAAATGCGGGTAAGTTATTAGTGCCTTACTATAGGCAACCTTTTCGGCATTCAATTAGTGTTTGATAGATGACTACCAGATTTTGTTTTGCAAGTTTCAGAATGAGCTGTCTTTGTTTCAATTTTACTTCTTTATGATTAATCCTCTTCTTTCGTCTTCAAATATTGATATATTACGCATCCGTTGACGGTCATCATCACGTACTTCTTGTGCTAGAAGAATTAGAGTTTGATGTGTCATTACACACTTGATAATGTTCGAATCGTACTTTGTAATGGCAGATGCAAGGTGTGTTGAAATTTCTGAAGTTGTCTGCTCCGGATGCTTCTTTGGTTTGCAATGTCTGTTGAAATTTGTGAAGTTGGCTTCTCCAAATACTTCTCTGGTTTCTTATTTTTTATACACTAATTGGCTGGTTAGTAGTGAACTAACTTTAAGATAATTTTATGATTTTTCTTTATGGGAAAAGAGTGAATAGCTCTTTAGCTTTCAAATCTGACTTAGACTTCTTCAGACATTCTTTGATGTGTATTTCATCTTTATATTCTCCTTATCTTTTATCAAATTAAACGATATAACAAACAACAATGTCAGGCACATGTCCGTGCCTCGCACGGGCACACTACATCTAGTAACAAAAGAGAGGGGAAAGCGACTCTGGTGGGGTTGATGGTATCTTCTTCGAATTTGAATTGAATTGAATTCAATGGAGAAGAATATCTGTTAATAAGATTGCAAAAAATAAATGATAAAAATGTTAGAAGAAGACGAAGATTTCCTGGAATCAGAAACACAACTTACTGATGACCAGAAAATTGAGATTGCCAAATGGTTCCTTCTTAATGCCCCAGCCGGCGAAATTCAGTACGTCGCCAAAGGTCTTCTTCTTCTTCTCTTTCGTTTATTTTCTGCGCTAAAGTTTTTTGTATTTTGAAGCTTTTTTCGTGCTTGAAAATGTGACCGCATTGGTGTTCATTTGCGATCGGCAGTTTATTTTTTACATTTTTGGTTTTGAGCGTCATTTGGTTGGATTTGCAGATGTTAGAGCTATTTTAAAGGACGAAAATATATATAAGAAAGCGGCCGAGGAGTCATTTCCTTCGTACAACAAATCTCACTTGATTTGTCTCGAATTCCCAAACAGAAGTGGCGATGTAAGTCTCTCTCTTGTTTTCTTTTTTCATTGGGTAAGTTAGATCTTTGAAAATGTAAGTTAGACTAATCGTGTCATTCAAATTGATAATTTCAGATTTGACAGTTTTCCGTAGTCGAAGATTGAAATATTAAGTGAACT</genome_strand>
        <mrna_strand>TTCTGCCCAGTTTCGGAGACGGAAATTCCTCATAGATTTGCTCCTACGAACAAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCAAGGTGTGTTGAAATTTCTGAAGTTGTCTGCTCCGGATGCTTCTTTGGTTTGCAATGTCTGTTGAAATTTGTGAAGTTGGCTTCTCCAAATACTTCTCTGGTTTCTTATTTTTTATACACTAATTGGCTG...................................................................................................................................................................................GCACATGTCCGTGCCTCGCACGGGCACACTACATCTAGTAACAAAAGAGAGGGGAAAGCGACTCTGGTGGGGTTGATGGTATCTTCTTCGAATTTGAATTGAATTGAATTCAATGGAGAAGAATATCTGTTAATAAGATTGCAAAAAATAAATGATAAAAATGTTAGAAGAAGACGAAGATTTCCTGGAATCAGAAACACAACTTACTGATGACCAGAAAATTGAGATTGCCAAATGGTTCCTTCTTAATGCCCCAGCCGGCGAAATTCAGTACGTCGCCAAAG................................................................................................................................................................ATGTTAGAGCTATTTTAAAGGACGAAAATATATATAAGAAAGCGGCCGAGGAGTCATTTCCTTCGTACAACAAATCTCACTTGATTTGTCTCGAATTCCCAAACAGAAGTGGCGAT...............................................................................................ATTTGACAGTTTTCCGTAGTCGAAGATTGAAATATTAAGTGAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E231819" ref_strand="+" ref_description="SGN-E231819 [cLED-7-K23]">
      <seq>ttctgcccagtttcggagacggaaattcctcatagatttgctcctacgaacaaaaagatgcaaggtgtgttgaaatttctgaagttgtctgctccggatgcttctttggtttgcaatgtctgttgaaatttgtgaagttggcttctccaaatacttctctggtttcttattttttatacactaattggctggcacatgtccgtgcctcgcacgggcacactacatctagtaacaaaagagaggggaaagcgactctggtggggttgatggtatcttcttcgaatttgaattgaattggaattcatgggagaagaatttctgttaataagattgcaaaaaataaatgataaaaatgttagaagaagacgaatatttcctggaatcagaaacacaacttactgatgaccagaaaattgagattgccaaatggttccttcttaatgccccagccggcgaaattcagtacgtcgccaaagatgttagagctattttaaaggacgaaaatatatataagaaagcggccgaggagtcatttccttcgtacaacaaatctcacttgatttgtctcgaattcccaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="56293" stop="52023"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55993" g_stop="55937" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55936" i_stop="53185" i_length="2752">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53184" g_stop="53051" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="191" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53050" i_stop="52872" i_length="179">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.912" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52871" g_stop="52588" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="476" r_length="285" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52587" i_stop="52428" i_length="160">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52427" g_stop="52323" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="581" r_length="105" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E231819" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231819" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55993" e_stop="55937"/>
          <exon e_start="53184" e_stop="53051"/>
          <exon e_start="52871" e_stop="52588"/>
          <exon e_start="52427" e_stop="52323"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTGCCCAGTTTCGGAGACGGAAATTCCTCATAGATTTGCTCCTACGAACAAAAAGGTACACTCCTTTGTTTGGTTTGTTGCTTGCTTCTCATTCGTTGATCTTCTGGGTTTTCCTTCCAATCGGATCTACCAAATTCGCCTTCATTTGCTTGATTTATGTGTTGTTTAATCATTAATGTTGTATTTGCTAATATGAATTGTTACCTGCCGCTTAGACTTAGTGTTAATTTGGTTGGTTTGTTGAATCCGCAAAATATCTCTTGCACTTTGGTTTACTCGCTTTGCTTCTTCATTTCAGTATTCCCAATTTGTAATCATTATAGCTTGCTAAAATTAGTTGTTTTGCTATGTGTTTCAACATCCACGGAAAGGGCTCTGCGCTCTGGATCTAAAATTTTCTCCGCTGCTATTCTAGAATGTTTACTTTTATACTATGTGTGTCAGTTTGATTTCTTGGCTAAATTCAGAAAAGAAGGATTTTCTGCTGATTTAGCCGACCACAGAAGCTTTAACTTGAGTAGTTGTGATATTGGTTTGTGGTTCTAACTACAGTATTACTGATTTTTGTTAAAACTATGGAAAGGTAGGCGATTACTTGCACTTACGCCTATACTCCTCATGTTTACCTCCACCTTTTGATAGTACAAGCTATATGATAGAATTGATGGCCTTGAGGTGTTTGATATAATTGATATAAAGTTATGTATATACAATTATTTTAGAAATAAAACATAGTTAAGCATTTGATTTGTTAAATTTATCATGCTCACTACGTGTTCGACAATTTGTTTGGAAGAAAAAATGGAGTATTCATCAATAATAATAAAATGTTTAAAACATATGAATACTCAAGACTGAACTAACTCACTAACTTGTCTATCTATGTGACCTCTACTAACTGAACTACTAAACTAGAGCCCTCCAGAGAGTGAAGAGGTCTCACGAAATATATTCTGTAATACCCAAACACATTTACTACCCATGGGGATCCCCGAGTAGTTTACCAGACAAATTGAGTTGTGGGCAACATCGAAGATTCTCTTCACCATCTAGGCTATGGAAGAGATTACTATAGAGATAGATGAAAGATTGTTTAGTCAATGGGTGTGAATTATCACTACACTTGCAACTACTATGTCGTAGTCGATATGAACTTAGTATATGTGTATTTTAAATTGCTCAAATTAGTGTATAGAGAGTTGAGGGTGGTACGGCTGCCACACCACATCTTACCTGGGGTTGGTGATAGTTTCACAGATTACTTTGACTGTAGTTTGATATATAATATCTGATGCTTTTGTTTTGTGAGTATCAGAATGAACTGTCTTTGTTTCGATTTTACTTCCTTATGATTAATCCTCTTCTTTCGTCTTTAAATATTGACATATTAGGCATGCTTTGACTGTCCTATCATTACGTACTTCTTGTGCTAGAAGATGTAACATTCTTCACCTTTTTGGTTTGCCTCCTGTAACGTGAAAATTTTTTGGTAGATAATTGAACATAACAGGCTGTGTTATCCTTATAGATGTTAACAAACAGCATATCTTGAGCCCATATGCAATATTGCGAGGTGCTGATAAAGTTTCATTATTACGTACGTGTGATCATATGAATAAATCTGAACGTGTAGTTGAACAGAAGGAACACTTCTCTAAGTGAAGCGAAGGAAAAAGCTCTCTAAGAGCAAAAAATTTATTCGAAGAGAACAACTTCTATGTGGAAGTCAATAGTCCAGAATGTACATAATAGTAAGTTCTTAAATGAACTACTAAGCATCATTAGCAGCTGAGGCAAAATATAGACATCTAAATATCAAAATAATACGATCGTGTGAATTGGAGTTTCTTTAAGGATATTGAAGCTCGTGGGATTCAGGCAAAAGTAAGTAAGTTGGAACAGTATGTGCATCTATGCTATCAAACTATCAATTGTAGTTTATTTCAGCAGAGGAGTTTTCTCCCCTCATAGAGGATACGCAAGGAGACCATTGTCTTTTTTTTTTTGCTTTAATGATGAATGGAGGATCAGAACAAAATGCTGAAATAAGCTGTACAATTGAGCTGGATTAGGGGTTATTAGGTGGGCAGGAAGGAAAAATAACTGAAGTGGTGTCTCAACTCTCATAAATTATGCTAATGACACACTGATAATGCGTGTCCAGCAGACGGGACAGTTGGAGTATTTTAGAGTAATGTAGTTATTTTTATGGCTTGGTGCTTGAGGTGTTAAATGGTTTTGTAAAAATTGATGTTTTAATTCAATTTTTACGATTTGCACCTTTTCTGATTGGAAGAAATATATATGGTTAGTCAAATTCTGCCTAAGTTTCATCACAAGTTCATGTAATAACAACAGTGACAACAGTAAGAAAGAATATTAGTTTATTCAGTGGTGTTGGCTGGGAAGATGATGTCTTGCATCATGTAAATGGCAATGGAGAAGTCTTGATTTGAGTAGTAAGAAGTAACAAAGCGTACATGGGGGGATCTTGCCCCTGTTACCCTTACCCTCGACTATCTTTGGTAAATGCGGGTAAGTTATTAGTGCCTTACTATAGGCAACCTTTTCGGCATTCAATTAGTGTTTGATAGATGACTACCAGATTTTGTTTTGCAAGTTTCAGAATGAGCTGTCTTTGTTTCAATTTTACTTCTTTATGATTAATCCTCTTCTTTCGTCTTCAAATATTGATATATTACGCATCCGTTGACGGTCATCATCACGTACTTCTTGTGCTAGAAGAATTAGAGTTTGATGTGTCATTACACACTTGATAATGTTCGAATCGTACTTTGTAATGGCAGATGCAAGGTGTGTTGAAATTTCTGAAGTTGTCTGCTCCGGATGCTTCTTTGGTTTGCAATGTCTGTTGAAATTTGTGAAGTTGGCTTCTCCAAATACTTCTCTGGTTTCTTATTTTTTATACACTAATTGGCTGGTTAGTAGTGAACTAACTTTAAGATAATTTTATGATTTTTCTTTATGGGAAAAGAGTGAATAGCTCTTTAGCTTTCAAATCTGACTTAGACTTCTTCAGACATTCTTTGATGTGTATTTCATCTTTATATTCTCCTTATCTTTTATCAAATTAAACGATATAACAAACAACAATGTCAGGCACATGTCCGTGCCTCGCACGGGCACACTACATCTAGTAACAAAAGAGAGGGGAAAGCGACTCTGGTGGGGTTGATGGTATCTTCTTCGAATTTGAATTGAATT-GAATTCAATGGAGAAGAATATCTGTTAATAAGATTGCAAAAAATAAATGATAAAAATGTTAGAAGAAGACGAAGATTTCCTGGAATCAGAAACACAACTTACTGATGACCAGAAAATTGAGATTGCCAAATGGTTCCTTCTTAATGCCCCAGCCGGCGAAATTCAGTACGTCGCCAAAGGTCTTCTTCTTCTTCTCTTTCGTTTATTTTCTGCGCTAAAGTTTTTTGTATTTTGAAGCTTTTTTCGTGCTTGAAAATGTGACCGCATTGGTGTTCATTTGCGATCGGCAGTTTATTTTTTACATTTTTGGTTTTGAGCGTCATTTGGTTGGATTTGCAGATGTTAGAGCTATTTTAAAGGACGAAAATATATATAAGAAAGCGGCCGAGGAGTCATTTCCTTCGTACAACAAATCTCACTTGATTTGTCTCGAATTCCCAAACA</genome_strand>
        <mrna_strand>TTCTGCCCAGTTTCGGAGACGGAAATTCCTCATAGATTTGCTCCTACGAACAAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCAAGGTGTGTTGAAATTTCTGAAGTTGTCTGCTCCGGATGCTTCTTTGGTTTGCAATGTCTGTTGAAATTTGTGAAGTTGGCTTCTCCAAATACTTCTCTGGTTTCTTATTTTTTATACACTAATTGGCTG...................................................................................................................................................................................GCACATGTCCGTGCCTCGCACGGGCACACTACATCTAGTAACAAAAGAGAGGGGAAAGCGACTCTGGTGGGGTTGATGGTATCTTCTTCGAATTTGAATTGAATTGGAATTCATGGGAGAAGAATTTCTGTTAATAAGATTGCAAAAAATAAATGATAAAAATGTTAGAAGAAGACGAATATTTCCTGGAATCAGAAACACAACTTACTGATGACCAGAAAATTGAGATTGCCAAATGGTTCCTTCTTAATGCCCCAGCCGGCGAAATTCAGTACGTCGCCAAAG................................................................................................................................................................ATGTTAGAGCTATTTTAAAGGACGAAAATATATATAAGAAAGCGGCCGAGGAGTCATTTCCTTCGTACAACAAATCTCACTTGATTTGTCTCGAATTCCCAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E331596" ref_strand="+" ref_description="SGN-E331596 [cTOD-9-N14]">
      <seq>ttatttgacctttcccttaattttctcttctttctctgcgatcttttatcttcctctttgttattctgaaaaactttcttactttccatggaaaaaagtagattcattcttctgcccagtttcggagacggaaattcctcatagatttgctcctacgaacaaaaaggcacatgtccgtgcctcgcacgggcacactacatctagtaacaaaagagaggggaaagcgactctggtggggttgatggtatcttcttcgaatttgaattgaattgaattcaatggagaagaatatctgttaataagattgcaaaaaataaatgataaaaatgttagaagaagacgaagatttcctggaatcagaaacacaacttactgatgaccagaaaattgagattgccaaatggttccttcttaatgccccagccggcgaaattcagtacgtcgccaaagatgttagagctattttaaaggacgaaaatatatataagaaagcggccgaggagtcatttccttcgtacaacaaatctcacttgatttgtctcgaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="56402" stop="52031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56102" g_stop="55937" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55936" i_stop="52872" i_length="3065">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.912" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52871" g_stop="52588" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="450" r_length="284" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52587" i_stop="52428" i_length="160">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52427" g_stop="52331" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="547" r_length="97" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E331596" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331596" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56102" e_stop="55937"/>
          <exon e_start="52871" e_stop="52588"/>
          <exon e_start="52427" e_stop="52331"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTTGACCTTTCCCTTAATTTTCTCTTCTTTCTCTGCGATCTTTTATCTTCCTCTTTGTTATTCTGAAAAACTTTCTTACTTTCCATGGAAAAAAGTAGATTCATTCTTCTGCCCAGTTTCGGAGACGGAAATTCCTCATAGATTTGCTCCTACGAACAAAAAGGTACACTCCTTTGTTTGGTTTGTTGCTTGCTTCTCATTCGTTGATCTTCTGGGTTTTCCTTCCAATCGGATCTACCAAATTCGCCTTCATTTGCTTGATTTATGTGTTGTTTAATCATTAATGTTGTATTTGCTAATATGAATTGTTACCTGCCGCTTAGACTTAGTGTTAATTTGGTTGGTTTGTTGAATCCGCAAAATATCTCTTGCACTTTGGTTTACTCGCTTTGCTTCTTCATTTCAGTATTCCCAATTTGTAATCATTATAGCTTGCTAAAATTAGTTGTTTTGCTATGTGTTTCAACATCCACGGAAAGGGCTCTGCGCTCTGGATCTAAAATTTTCTCCGCTGCTATTCTAGAATGTTTACTTTTATACTATGTGTGTCAGTTTGATTTCTTGGCTAAATTCAGAAAAGAAGGATTTTCTGCTGATTTAGCCGACCACAGAAGCTTTAACTTGAGTAGTTGTGATATTGGTTTGTGGTTCTAACTACAGTATTACTGATTTTTGTTAAAACTATGGAAAGGTAGGCGATTACTTGCACTTACGCCTATACTCCTCATGTTTACCTCCACCTTTTGATAGTACAAGCTATATGATAGAATTGATGGCCTTGAGGTGTTTGATATAATTGATATAAAGTTATGTATATACAATTATTTTAGAAATAAAACATAGTTAAGCATTTGATTTGTTAAATTTATCATGCTCACTACGTGTTCGACAATTTGTTTGGAAGAAAAAATGGAGTATTCATCAATAATAATAAAATGTTTAAAACATATGAATACTCAAGACTGAACTAACTCACTAACTTGTCTATCTATGTGACCTCTACTAACTGAACTACTAAACTAGAGCCCTCCAGAGAGTGAAGAGGTCTCACGAAATATATTCTGTAATACCCAAACACATTTACTACCCATGGGGATCCCCGAGTAGTTTACCAGACAAATTGAGTTGTGGGCAACATCGAAGATTCTCTTCACCATCTAGGCTATGGAAGAGATTACTATAGAGATAGATGAAAGATTGTTTAGTCAATGGGTGTGAATTATCACTACACTTGCAACTACTATGTCGTAGTCGATATGAACTTAGTATATGTGTATTTTAAATTGCTCAAATTAGTGTATAGAGAGTTGAGGGTGGTACGGCTGCCACACCACATCTTACCTGGGGTTGGTGATAGTTTCACAGATTACTTTGACTGTAGTTTGATATATAATATCTGATGCTTTTGTTTTGTGAGTATCAGAATGAACTGTCTTTGTTTCGATTTTACTTCCTTATGATTAATCCTCTTCTTTCGTCTTTAAATATTGACATATTAGGCATGCTTTGACTGTCCTATCATTACGTACTTCTTGTGCTAGAAGATGTAACATTCTTCACCTTTTTGGTTTGCCTCCTGTAACGTGAAAATTTTTTGGTAGATAATTGAACATAACAGGCTGTGTTATCCTTATAGATGTTAACAAACAGCATATCTTGAGCCCATATGCAATATTGCGAGGTGCTGATAAAGTTTCATTATTACGTACGTGTGATCATATGAATAAATCTGAACGTGTAGTTGAACAGAAGGAACACTTCTCTAAGTGAAGCGAAGGAAAAAGCTCTCTAAGAGCAAAAAATTTATTCGAAGAGAACAACTTCTATGTGGAAGTCAATAGTCCAGAATGTACATAATAGTAAGTTCTTAAATGAACTACTAAGCATCATTAGCAGCTGAGGCAAAATATAGACATCTAAATATCAAAATAATACGATCGTGTGAATTGGAGTTTCTTTAAGGATATTGAAGCTCGTGGGATTCAGGCAAAAGTAAGTAAGTTGGAACAGTATGTGCATCTATGCTATCAAACTATCAATTGTAGTTTATTTCAGCAGAGGAGTTTTCTCCCCTCATAGAGGATACGCAAGGAGACCATTGTCTTTTTTTTTTTGCTTTAATGATGAATGGAGGATCAGAACAAAATGCTGAAATAAGCTGTACAATTGAGCTGGATTAGGGGTTATTAGGTGGGCAGGAAGGAAAAATAACTGAAGTGGTGTCTCAACTCTCATAAATTATGCTAATGACACACTGATAATGCGTGTCCAGCAGACGGGACAGTTGGAGTATTTTAGAGTAATGTAGTTATTTTTATGGCTTGGTGCTTGAGGTGTTAAATGGTTTTGTAAAAATTGATGTTTTAATTCAATTTTTACGATTTGCACCTTTTCTGATTGGAAGAAATATATATGGTTAGTCAAATTCTGCCTAAGTTTCATCACAAGTTCATGTAATAACAACAGTGACAACAGTAAGAAAGAATATTAGTTTATTCAGTGGTGTTGGCTGGGAAGATGATGTCTTGCATCATGTAAATGGCAATGGAGAAGTCTTGATTTGAGTAGTAAGAAGTAACAAAGCGTACATGGGGGGATCTTGCCCCTGTTACCCTTACCCTCGACTATCTTTGGTAAATGCGGGTAAGTTATTAGTGCCTTACTATAGGCAACCTTTTCGGCATTCAATTAGTGTTTGATAGATGACTACCAGATTTTGTTTTGCAAGTTTCAGAATGAGCTGTCTTTGTTTCAATTTTACTTCTTTATGATTAATCCTCTTCTTTCGTCTTCAAATATTGATATATTACGCATCCGTTGACGGTCATCATCACGTACTTCTTGTGCTAGAAGAATTAGAGTTTGATGTGTCATTACACACTTGATAATGTTCGAATCGTACTTTGTAATGGCAGATGCAAGGTGTGTTGAAATTTCTGAAGTTGTCTGCTCCGGATGCTTCTTTGGTTTGCAATGTCTGTTGAAATTTGTGAAGTTGGCTTCTCCAAATACTTCTCTGGTTTCTTATTTTTTATACACTAATTGGCTGGTTAGTAGTGAACTAACTTTAAGATAATTTTATGATTTTTCTTTATGGGAAAAGAGTGAATAGCTCTTTAGCTTTCAAATCTGACTTAGACTTCTTCAGACATTCTTTGATGTGTATTTCATCTTTATATTCTCCTTATCTTTTATCAAATTAAACGATATAACAAACAACAATGTCAGGCACATGTCCGTGCCTCGCACGGGCACACTACATCTAGTAACAAAAGAGAGGGGAAAGCGACTCTGGTGGGGTTGATGGTATCTTCTTCGAATTTGAATTGAATTGAATTCAATGGAGAAGAATATCTGTTAATAAGATTGCAAAAAATAAATGATAAAAATGTTAGAAGAAGACGAAGATTTCCTGGAATCAGAAACACAACTTACTGATGACCAGAAAATTGAGATTGCCAAATGGTTCCTTCTTAATGCCCCAGCCGGCGAAATTCAGTACGTCGCCAAAGGTCTTCTTCTTCTTCTCTTTCGTTTATTTTCTGCGCTAAAGTTTTTTGTATTTTGAAGCTTTTTTCGTGCTTGAAAATGTGACCGCATTGGTGTTCATTTGCGATCGGCAGTTTATTTTTTACATTTTTGGTTTTGAGCGTCATTTGGTTGGATTTGCAGATGTTAGAGCTATTTTAAAGGACGAAAATATATATAAGAAAGCGGCCGAGGAGTCATTTCCTTCGTACAACAAATCTCACTTGATTTGTCTCGAATT</genome_strand>
        <mrna_strand>TTATTTGACCTTTCCCTTAATTTTCTCTTCTTTCTCTGCGATCTTTTATCTTCCTCTTTGTTATTCTGAAAAACTTTCTTACTTTCCATGGAAAAAAGTAGATTCATTCTTCTGCCCAGTTTCGGAGACGGAAATTCCTCATAGATTTGCTCCTACGAACAAAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACATGTCCGTGCCTCGCACGGGCACACTACATCTAGTAACAAAAGAGAGGGGAAAGCGACTCTGGTGGGGTTGATGGTATCTTCTTCGAATTTGAATTGAATTGAATTCAATGGAGAAGAATATCTGTTAATAAGATTGCAAAAAATAAATGATAAAAATGTTAGAAGAAGACGAAGATTTCCTGGAATCAGAAACACAACTTACTGATGACCAGAAAATTGAGATTGCCAAATGGTTCCTTCTTAATGCCCCAGCCGGCGAAATTCAGTACGTCGCCAAAG................................................................................................................................................................ATGTTAGAGCTATTTTAAAGGACGAAAATATATATAAGAAAGCGGCCGAGGAGTCATTTCCTTCGTACAACAAATCTCACTTGATTTGTCTCGAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E301075" ref_strand="+" ref_description="SGN-E301075 [cLEW-22-N17]">
      <seq>tatcttcctctttgttattctgaaaaactttcttactttccatggaaaaaagtagattcattcttctgcccagtttcggagacggaaattcctcatagatttgctcctacgaacaaaaagatgcaaggtgtgttgaaatttctgaagttgtctgctccggatgcttctttggtttgcaatgtctgttgaaatttgtgaagttggcttctccaaatacttctctggtttcttattttttatacactaattggctggcacatgtccgtgcctcgcacgggcacactacatctagtaacaaaagagaggggaaagcgactctggtggggttgatggtatcttcttcgaatttgaattgaattgaattcaatggagaagaatatctgttaataagattgcaaaaaataaatgataaaaatgttagaagaagacgaagatttcctggaatcagaaacacaacttactgatgaccagaaaattgagattgccaaatggttccttcttaatgccccagccggcgaaattcagtacgtcgccaaagatgttagagctattttaaaggacgaaaatatatataagaaagcggccgaggagtcatttccttcgtacaacaaatctcacttgatttgtctcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="56356" stop="52034"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56056" g_stop="55937" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55936" i_stop="53185" i_length="2752">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53184" g_stop="53051" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="254" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53050" i_stop="52872" i_length="179">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.912" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52871" g_stop="52588" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="538" r_length="284" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52587" i_stop="52428" i_length="160">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52427" g_stop="52334" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="632" r_length="94" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E301075" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56056" e_stop="55937"/>
          <exon e_start="53184" e_stop="53051"/>
          <exon e_start="52871" e_stop="52588"/>
          <exon e_start="52427" e_stop="52334"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCTTCCTCTTTGTTATTCTGAAAAACTTTCTTACTTTCCATGGAAAAAAGTAGATTCATTCTTCTGCCCAGTTTCGGAGACGGAAATTCCTCATAGATTTGCTCCTACGAACAAAAAGGTACACTCCTTTGTTTGGTTTGTTGCTTGCTTCTCATTCGTTGATCTTCTGGGTTTTCCTTCCAATCGGATCTACCAAATTCGCCTTCATTTGCTTGATTTATGTGTTGTTTAATCATTAATGTTGTATTTGCTAATATGAATTGTTACCTGCCGCTTAGACTTAGTGTTAATTTGGTTGGTTTGTTGAATCCGCAAAATATCTCTTGCACTTTGGTTTACTCGCTTTGCTTCTTCATTTCAGTATTCCCAATTTGTAATCATTATAGCTTGCTAAAATTAGTTGTTTTGCTATGTGTTTCAACATCCACGGAAAGGGCTCTGCGCTCTGGATCTAAAATTTTCTCCGCTGCTATTCTAGAATGTTTACTTTTATACTATGTGTGTCAGTTTGATTTCTTGGCTAAATTCAGAAAAGAAGGATTTTCTGCTGATTTAGCCGACCACAGAAGCTTTAACTTGAGTAGTTGTGATATTGGTTTGTGGTTCTAACTACAGTATTACTGATTTTTGTTAAAACTATGGAAAGGTAGGCGATTACTTGCACTTACGCCTATACTCCTCATGTTTACCTCCACCTTTTGATAGTACAAGCTATATGATAGAATTGATGGCCTTGAGGTGTTTGATATAATTGATATAAAGTTATGTATATACAATTATTTTAGAAATAAAACATAGTTAAGCATTTGATTTGTTAAATTTATCATGCTCACTACGTGTTCGACAATTTGTTTGGAAGAAAAAATGGAGTATTCATCAATAATAATAAAATGTTTAAAACATATGAATACTCAAGACTGAACTAACTCACTAACTTGTCTATCTATGTGACCTCTACTAACTGAACTACTAAACTAGAGCCCTCCAGAGAGTGAAGAGGTCTCACGAAATATATTCTGTAATACCCAAACACATTTACTACCCATGGGGATCCCCGAGTAGTTTACCAGACAAATTGAGTTGTGGGCAACATCGAAGATTCTCTTCACCATCTAGGCTATGGAAGAGATTACTATAGAGATAGATGAAAGATTGTTTAGTCAATGGGTGTGAATTATCACTACACTTGCAACTACTATGTCGTAGTCGATATGAACTTAGTATATGTGTATTTTAAATTGCTCAAATTAGTGTATAGAGAGTTGAGGGTGGTACGGCTGCCACACCACATCTTACCTGGGGTTGGTGATAGTTTCACAGATTACTTTGACTGTAGTTTGATATATAATATCTGATGCTTTTGTTTTGTGAGTATCAGAATGAACTGTCTTTGTTTCGATTTTACTTCCTTATGATTAATCCTCTTCTTTCGTCTTTAAATATTGACATATTAGGCATGCTTTGACTGTCCTATCATTACGTACTTCTTGTGCTAGAAGATGTAACATTCTTCACCTTTTTGGTTTGCCTCCTGTAACGTGAAAATTTTTTGGTAGATAATTGAACATAACAGGCTGTGTTATCCTTATAGATGTTAACAAACAGCATATCTTGAGCCCATATGCAATATTGCGAGGTGCTGATAAAGTTTCATTATTACGTACGTGTGATCATATGAATAAATCTGAACGTGTAGTTGAACAGAAGGAACACTTCTCTAAGTGAAGCGAAGGAAAAAGCTCTCTAAGAGCAAAAAATTTATTCGAAGAGAACAACTTCTATGTGGAAGTCAATAGTCCAGAATGTACATAATAGTAAGTTCTTAAATGAACTACTAAGCATCATTAGCAGCTGAGGCAAAATATAGACATCTAAATATCAAAATAATACGATCGTGTGAATTGGAGTTTCTTTAAGGATATTGAAGCTCGTGGGATTCAGGCAAAAGTAAGTAAGTTGGAACAGTATGTGCATCTATGCTATCAAACTATCAATTGTAGTTTATTTCAGCAGAGGAGTTTTCTCCCCTCATAGAGGATACGCAAGGAGACCATTGTCTTTTTTTTTTTGCTTTAATGATGAATGGAGGATCAGAACAAAATGCTGAAATAAGCTGTACAATTGAGCTGGATTAGGGGTTATTAGGTGGGCAGGAAGGAAAAATAACTGAAGTGGTGTCTCAACTCTCATAAATTATGCTAATGACACACTGATAATGCGTGTCCAGCAGACGGGACAGTTGGAGTATTTTAGAGTAATGTAGTTATTTTTATGGCTTGGTGCTTGAGGTGTTAAATGGTTTTGTAAAAATTGATGTTTTAATTCAATTTTTACGATTTGCACCTTTTCTGATTGGAAGAAATATATATGGTTAGTCAAATTCTGCCTAAGTTTCATCACAAGTTCATGTAATAACAACAGTGACAACAGTAAGAAAGAATATTAGTTTATTCAGTGGTGTTGGCTGGGAAGATGATGTCTTGCATCATGTAAATGGCAATGGAGAAGTCTTGATTTGAGTAGTAAGAAGTAACAAAGCGTACATGGGGGGATCTTGCCCCTGTTACCCTTACCCTCGACTATCTTTGGTAAATGCGGGTAAGTTATTAGTGCCTTACTATAGGCAACCTTTTCGGCATTCAATTAGTGTTTGATAGATGACTACCAGATTTTGTTTTGCAAGTTTCAGAATGAGCTGTCTTTGTTTCAATTTTACTTCTTTATGATTAATCCTCTTCTTTCGTCTTCAAATATTGATATATTACGCATCCGTTGACGGTCATCATCACGTACTTCTTGTGCTAGAAGAATTAGAGTTTGATGTGTCATTACACACTTGATAATGTTCGAATCGTACTTTGTAATGGCAGATGCAAGGTGTGTTGAAATTTCTGAAGTTGTCTGCTCCGGATGCTTCTTTGGTTTGCAATGTCTGTTGAAATTTGTGAAGTTGGCTTCTCCAAATACTTCTCTGGTTTCTTATTTTTTATACACTAATTGGCTGGTTAGTAGTGAACTAACTTTAAGATAATTTTATGATTTTTCTTTATGGGAAAAGAGTGAATAGCTCTTTAGCTTTCAAATCTGACTTAGACTTCTTCAGACATTCTTTGATGTGTATTTCATCTTTATATTCTCCTTATCTTTTATCAAATTAAACGATATAACAAACAACAATGTCAGGCACATGTCCGTGCCTCGCACGGGCACACTACATCTAGTAACAAAAGAGAGGGGAAAGCGACTCTGGTGGGGTTGATGGTATCTTCTTCGAATTTGAATTGAATTGAATTCAATGGAGAAGAATATCTGTTAATAAGATTGCAAAAAATAAATGATAAAAATGTTAGAAGAAGACGAAGATTTCCTGGAATCAGAAACACAACTTACTGATGACCAGAAAATTGAGATTGCCAAATGGTTCCTTCTTAATGCCCCAGCCGGCGAAATTCAGTACGTCGCCAAAGGTCTTCTTCTTCTTCTCTTTCGTTTATTTTCTGCGCTAAAGTTTTTTGTATTTTGAAGCTTTTTTCGTGCTTGAAAATGTGACCGCATTGGTGTTCATTTGCGATCGGCAGTTTATTTTTTACATTTTTGGTTTTGAGCGTCATTTGGTTGGATTTGCAGATGTTAGAGCTATTTTAAAGGACGAAAATATATATAAGAAAGCGGCCGAGGAGTCATTTCCTTCGTACAACAAATCTCACTTGATTTGTCTCGA</genome_strand>
        <mrna_strand>TATCTTCCTCTTTGTTATTCTGAAAAACTTTCTTACTTTCCATGGAAAAAAGTAGATTCATTCTTCTGCCCAGTTTCGGAGACGGAAATTCCTCATAGATTTGCTCCTACGAACAAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCAAGGTGTGTTGAAATTTCTGAAGTTGTCTGCTCCGGATGCTTCTTTGGTTTGCAATGTCTGTTGAAATTTGTGAAGTTGGCTTCTCCAAATACTTCTCTGGTTTCTTATTTTTTATACACTAATTGGCTG...................................................................................................................................................................................GCACATGTCCGTGCCTCGCACGGGCACACTACATCTAGTAACAAAAGAGAGGGGAAAGCGACTCTGGTGGGGTTGATGGTATCTTCTTCGAATTTGAATTGAATTGAATTCAATGGAGAAGAATATCTGTTAATAAGATTGCAAAAAATAAATGATAAAAATGTTAGAAGAAGACGAAGATTTCCTGGAATCAGAAACACAACTTACTGATGACCAGAAAATTGAGATTGCCAAATGGTTCCTTCTTAATGCCCCAGCCGGCGAAATTCAGTACGTCGCCAAAG................................................................................................................................................................ATGTTAGAGCTATTTTAAAGGACGAAAATATATATAAGAAAGCGGCCGAGGAGTCATTTCCTTCGTACAACAAATCTCACTTGATTTGTCTCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242680" ref_strand="+" ref_description="SGN-E242680 [cLED-30-J4]">
      <seq>ttctgcccagtttcggagacggaaattcctcatagatttgctcctacgaacaaaaagatgcaaggtgtgttgaaatttctgaagttgtctgctccggatgcttctttggtttgcaatgtctgttgaaatttgtgaagttggcttctccaaatacttctctggtttcttattttttatacactaattggctggcacatgtccgtgcctcgcacgggcacactacatctagtaacaaaagagaggggaaagcgactctggtggggttgatggtatcttcttcgaatttgaattgaattgaattcaatggagaagaatatctgttaataagattgcaaaaaataaatgataaaaatgttagaagaagacgaagatttcctggaatcagaaacacaacttactgatgaccagaaaattgagattgccaaatggttccttcttaatgccccagccggcgaaattcagtacgtcgccaaagatgttagagctatttttaaggacgaaaatatatataagaaagcggccgaggagtcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="56293" stop="52070"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55993" g_stop="55937" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55936" i_stop="53185" i_length="2752">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53184" g_stop="53051" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="191" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53050" i_stop="52872" i_length="179">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.912" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52871" g_stop="52588" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="475" r_length="284" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52587" i_stop="52428" i_length="160">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52427" g_stop="52373" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="530" r_length="55" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E242680" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242680" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55993" e_stop="55937"/>
          <exon e_start="53184" e_stop="53051"/>
          <exon e_start="52871" e_stop="52588"/>
          <exon e_start="52427" e_stop="52373"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTGCCCAGTTTCGGAGACGGAAATTCCTCATAGATTTGCTCCTACGAACAAAAAGGTACACTCCTTTGTTTGGTTTGTTGCTTGCTTCTCATTCGTTGATCTTCTGGGTTTTCCTTCCAATCGGATCTACCAAATTCGCCTTCATTTGCTTGATTTATGTGTTGTTTAATCATTAATGTTGTATTTGCTAATATGAATTGTTACCTGCCGCTTAGACTTAGTGTTAATTTGGTTGGTTTGTTGAATCCGCAAAATATCTCTTGCACTTTGGTTTACTCGCTTTGCTTCTTCATTTCAGTATTCCCAATTTGTAATCATTATAGCTTGCTAAAATTAGTTGTTTTGCTATGTGTTTCAACATCCACGGAAAGGGCTCTGCGCTCTGGATCTAAAATTTTCTCCGCTGCTATTCTAGAATGTTTACTTTTATACTATGTGTGTCAGTTTGATTTCTTGGCTAAATTCAGAAAAGAAGGATTTTCTGCTGATTTAGCCGACCACAGAAGCTTTAACTTGAGTAGTTGTGATATTGGTTTGTGGTTCTAACTACAGTATTACTGATTTTTGTTAAAACTATGGAAAGGTAGGCGATTACTTGCACTTACGCCTATACTCCTCATGTTTACCTCCACCTTTTGATAGTACAAGCTATATGATAGAATTGATGGCCTTGAGGTGTTTGATATAATTGATATAAAGTTATGTATATACAATTATTTTAGAAATAAAACATAGTTAAGCATTTGATTTGTTAAATTTATCATGCTCACTACGTGTTCGACAATTTGTTTGGAAGAAAAAATGGAGTATTCATCAATAATAATAAAATGTTTAAAACATATGAATACTCAAGACTGAACTAACTCACTAACTTGTCTATCTATGTGACCTCTACTAACTGAACTACTAAACTAGAGCCCTCCAGAGAGTGAAGAGGTCTCACGAAATATATTCTGTAATACCCAAACACATTTACTACCCATGGGGATCCCCGAGTAGTTTACCAGACAAATTGAGTTGTGGGCAACATCGAAGATTCTCTTCACCATCTAGGCTATGGAAGAGATTACTATAGAGATAGATGAAAGATTGTTTAGTCAATGGGTGTGAATTATCACTACACTTGCAACTACTATGTCGTAGTCGATATGAACTTAGTATATGTGTATTTTAAATTGCTCAAATTAGTGTATAGAGAGTTGAGGGTGGTACGGCTGCCACACCACATCTTACCTGGGGTTGGTGATAGTTTCACAGATTACTTTGACTGTAGTTTGATATATAATATCTGATGCTTTTGTTTTGTGAGTATCAGAATGAACTGTCTTTGTTTCGATTTTACTTCCTTATGATTAATCCTCTTCTTTCGTCTTTAAATATTGACATATTAGGCATGCTTTGACTGTCCTATCATTACGTACTTCTTGTGCTAGAAGATGTAACATTCTTCACCTTTTTGGTTTGCCTCCTGTAACGTGAAAATTTTTTGGTAGATAATTGAACATAACAGGCTGTGTTATCCTTATAGATGTTAACAAACAGCATATCTTGAGCCCATATGCAATATTGCGAGGTGCTGATAAAGTTTCATTATTACGTACGTGTGATCATATGAATAAATCTGAACGTGTAGTTGAACAGAAGGAACACTTCTCTAAGTGAAGCGAAGGAAAAAGCTCTCTAAGAGCAAAAAATTTATTCGAAGAGAACAACTTCTATGTGGAAGTCAATAGTCCAGAATGTACATAATAGTAAGTTCTTAAATGAACTACTAAGCATCATTAGCAGCTGAGGCAAAATATAGACATCTAAATATCAAAATAATACGATCGTGTGAATTGGAGTTTCTTTAAGGATATTGAAGCTCGTGGGATTCAGGCAAAAGTAAGTAAGTTGGAACAGTATGTGCATCTATGCTATCAAACTATCAATTGTAGTTTATTTCAGCAGAGGAGTTTTCTCCCCTCATAGAGGATACGCAAGGAGACCATTGTCTTTTTTTTTTTGCTTTAATGATGAATGGAGGATCAGAACAAAATGCTGAAATAAGCTGTACAATTGAGCTGGATTAGGGGTTATTAGGTGGGCAGGAAGGAAAAATAACTGAAGTGGTGTCTCAACTCTCATAAATTATGCTAATGACACACTGATAATGCGTGTCCAGCAGACGGGACAGTTGGAGTATTTTAGAGTAATGTAGTTATTTTTATGGCTTGGTGCTTGAGGTGTTAAATGGTTTTGTAAAAATTGATGTTTTAATTCAATTTTTACGATTTGCACCTTTTCTGATTGGAAGAAATATATATGGTTAGTCAAATTCTGCCTAAGTTTCATCACAAGTTCATGTAATAACAACAGTGACAACAGTAAGAAAGAATATTAGTTTATTCAGTGGTGTTGGCTGGGAAGATGATGTCTTGCATCATGTAAATGGCAATGGAGAAGTCTTGATTTGAGTAGTAAGAAGTAACAAAGCGTACATGGGGGGATCTTGCCCCTGTTACCCTTACCCTCGACTATCTTTGGTAAATGCGGGTAAGTTATTAGTGCCTTACTATAGGCAACCTTTTCGGCATTCAATTAGTGTTTGATAGATGACTACCAGATTTTGTTTTGCAAGTTTCAGAATGAGCTGTCTTTGTTTCAATTTTACTTCTTTATGATTAATCCTCTTCTTTCGTCTTCAAATATTGATATATTACGCATCCGTTGACGGTCATCATCACGTACTTCTTGTGCTAGAAGAATTAGAGTTTGATGTGTCATTACACACTTGATAATGTTCGAATCGTACTTTGTAATGGCAGATGCAAGGTGTGTTGAAATTTCTGAAGTTGTCTGCTCCGGATGCTTCTTTGGTTTGCAATGTCTGTTGAAATTTGTGAAGTTGGCTTCTCCAAATACTTCTCTGGTTTCTTATTTTTTATACACTAATTGGCTGGTTAGTAGTGAACTAACTTTAAGATAATTTTATGATTTTTCTTTATGGGAAAAGAGTGAATAGCTCTTTAGCTTTCAAATCTGACTTAGACTTCTTCAGACATTCTTTGATGTGTATTTCATCTTTATATTCTCCTTATCTTTTATCAAATTAAACGATATAACAAACAACAATGTCAGGCACATGTCCGTGCCTCGCACGGGCACACTACATCTAGTAACAAAAGAGAGGGGAAAGCGACTCTGGTGGGGTTGATGGTATCTTCTTCGAATTTGAATTGAATTGAATTCAATGGAGAAGAATATCTGTTAATAAGATTGCAAAAAATAAATGATAAAAATGTTAGAAGAAGACGAAGATTTCCTGGAATCAGAAACACAACTTACTGATGACCAGAAAATTGAGATTGCCAAATGGTTCCTTCTTAATGCCCCAGCCGGCGAAATTCAGTACGTCGCCAAAGGTCTTCTTCTTCTTCTCTTTCGTTTATTTTCTGCGCTAAAGTTTTTTGTATTTTGAAGCTTTTTTCGTGCTTGAAAATGTGACCGCATTGGTGTTCATTTGCGATCGGCAGTTTATTTTTTACATTTTTGGTTTTGAGCGTCATTTGGTTGGATTTGCAGATGTTAGAGCTATTTTAAAGGACGAAAATATATATAAGAAAGCGGCCGAGGAGTC</genome_strand>
        <mrna_strand>TTCTGCCCAGTTTCGGAGACGGAAATTCCTCATAGATTTGCTCCTACGAACAAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCAAGGTGTGTTGAAATTTCTGAAGTTGTCTGCTCCGGATGCTTCTTTGGTTTGCAATGTCTGTTGAAATTTGTGAAGTTGGCTTCTCCAAATACTTCTCTGGTTTCTTATTTTTTATACACTAATTGGCTG...................................................................................................................................................................................GCACATGTCCGTGCCTCGCACGGGCACACTACATCTAGTAACAAAAGAGAGGGGAAAGCGACTCTGGTGGGGTTGATGGTATCTTCTTCGAATTTGAATTGAATTGAATTCAATGGAGAAGAATATCTGTTAATAAGATTGCAAAAAATAAATGATAAAAATGTTAGAAGAAGACGAAGATTTCCTGGAATCAGAAACACAACTTACTGATGACCAGAAAATTGAGATTGCCAAATGGTTCCTTCTTAATGCCCCAGCCGGCGAAATTCAGTACGTCGCCAAAG................................................................................................................................................................ATGTTAGAGCTATTTTTAAGGACGAAAATATATATAAGAAAGCGGCCGAGGAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E301158" ref_strand="+" ref_description="SGN-E301158 [cLEW-22-O20]">
      <seq>tatcttcctctttgttattctgaaaaactttcttactttccatggaaaaaagtagattcattcttctgcccagtttcggagacggaaattcctcatagatttgctcctacgaacaaaaagatgcaaggtgtgttgaaatttctgaagttgtctgctccggatgcttctttggtttgcaatgtctgttgaaatttgtgaagttggcttctccaaatacttctctggtttcttattttttatacactaattggctggcacatgtccgtgcctcgcacgggcacactacatctagtaacaaaagagaggggaaagcgactctggtggggttgatggtatcttcttcgaatttgaattgaattgaattcaatggagaagaatatctgttaataagattgcaaaaaataaatgataaaaatgttagaagaagacgaagatttcctggaatcagaaacacaacttactgatgaccagaaaattgagattgccaaatggttccttcttaatgccccagccggcgaaattcagtacgtcgccaaagatgttagagctattttaaaggacgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="56356" stop="52100"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56056" g_stop="55937" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55936" i_stop="53185" i_length="2752">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53184" g_stop="53051" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="254" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53050" i_stop="52872" i_length="179">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.912" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52871" g_stop="52588" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="538" r_length="284" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52587" i_stop="52428" i_length="160">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52427" g_stop="52400" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="566" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E301158" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301158" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56056" e_stop="55937"/>
          <exon e_start="53184" e_stop="53051"/>
          <exon e_start="52871" e_stop="52588"/>
          <exon e_start="52427" e_stop="52400"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCTTCCTCTTTGTTATTCTGAAAAACTTTCTTACTTTCCATGGAAAAAAGTAGATTCATTCTTCTGCCCAGTTTCGGAGACGGAAATTCCTCATAGATTTGCTCCTACGAACAAAAAGGTACACTCCTTTGTTTGGTTTGTTGCTTGCTTCTCATTCGTTGATCTTCTGGGTTTTCCTTCCAATCGGATCTACCAAATTCGCCTTCATTTGCTTGATTTATGTGTTGTTTAATCATTAATGTTGTATTTGCTAATATGAATTGTTACCTGCCGCTTAGACTTAGTGTTAATTTGGTTGGTTTGTTGAATCCGCAAAATATCTCTTGCACTTTGGTTTACTCGCTTTGCTTCTTCATTTCAGTATTCCCAATTTGTAATCATTATAGCTTGCTAAAATTAGTTGTTTTGCTATGTGTTTCAACATCCACGGAAAGGGCTCTGCGCTCTGGATCTAAAATTTTCTCCGCTGCTATTCTAGAATGTTTACTTTTATACTATGTGTGTCAGTTTGATTTCTTGGCTAAATTCAGAAAAGAAGGATTTTCTGCTGATTTAGCCGACCACAGAAGCTTTAACTTGAGTAGTTGTGATATTGGTTTGTGGTTCTAACTACAGTATTACTGATTTTTGTTAAAACTATGGAAAGGTAGGCGATTACTTGCACTTACGCCTATACTCCTCATGTTTACCTCCACCTTTTGATAGTACAAGCTATATGATAGAATTGATGGCCTTGAGGTGTTTGATATAATTGATATAAAGTTATGTATATACAATTATTTTAGAAATAAAACATAGTTAAGCATTTGATTTGTTAAATTTATCATGCTCACTACGTGTTCGACAATTTGTTTGGAAGAAAAAATGGAGTATTCATCAATAATAATAAAATGTTTAAAACATATGAATACTCAAGACTGAACTAACTCACTAACTTGTCTATCTATGTGACCTCTACTAACTGAACTACTAAACTAGAGCCCTCCAGAGAGTGAAGAGGTCTCACGAAATATATTCTGTAATACCCAAACACATTTACTACCCATGGGGATCCCCGAGTAGTTTACCAGACAAATTGAGTTGTGGGCAACATCGAAGATTCTCTTCACCATCTAGGCTATGGAAGAGATTACTATAGAGATAGATGAAAGATTGTTTAGTCAATGGGTGTGAATTATCACTACACTTGCAACTACTATGTCGTAGTCGATATGAACTTAGTATATGTGTATTTTAAATTGCTCAAATTAGTGTATAGAGAGTTGAGGGTGGTACGGCTGCCACACCACATCTTACCTGGGGTTGGTGATAGTTTCACAGATTACTTTGACTGTAGTTTGATATATAATATCTGATGCTTTTGTTTTGTGAGTATCAGAATGAACTGTCTTTGTTTCGATTTTACTTCCTTATGATTAATCCTCTTCTTTCGTCTTTAAATATTGACATATTAGGCATGCTTTGACTGTCCTATCATTACGTACTTCTTGTGCTAGAAGATGTAACATTCTTCACCTTTTTGGTTTGCCTCCTGTAACGTGAAAATTTTTTGGTAGATAATTGAACATAACAGGCTGTGTTATCCTTATAGATGTTAACAAACAGCATATCTTGAGCCCATATGCAATATTGCGAGGTGCTGATAAAGTTTCATTATTACGTACGTGTGATCATATGAATAAATCTGAACGTGTAGTTGAACAGAAGGAACACTTCTCTAAGTGAAGCGAAGGAAAAAGCTCTCTAAGAGCAAAAAATTTATTCGAAGAGAACAACTTCTATGTGGAAGTCAATAGTCCAGAATGTACATAATAGTAAGTTCTTAAATGAACTACTAAGCATCATTAGCAGCTGAGGCAAAATATAGACATCTAAATATCAAAATAATACGATCGTGTGAATTGGAGTTTCTTTAAGGATATTGAAGCTCGTGGGATTCAGGCAAAAGTAAGTAAGTTGGAACAGTATGTGCATCTATGCTATCAAACTATCAATTGTAGTTTATTTCAGCAGAGGAGTTTTCTCCCCTCATAGAGGATACGCAAGGAGACCATTGTCTTTTTTTTTTTGCTTTAATGATGAATGGAGGATCAGAACAAAATGCTGAAATAAGCTGTACAATTGAGCTGGATTAGGGGTTATTAGGTGGGCAGGAAGGAAAAATAACTGAAGTGGTGTCTCAACTCTCATAAATTATGCTAATGACACACTGATAATGCGTGTCCAGCAGACGGGACAGTTGGAGTATTTTAGAGTAATGTAGTTATTTTTATGGCTTGGTGCTTGAGGTGTTAAATGGTTTTGTAAAAATTGATGTTTTAATTCAATTTTTACGATTTGCACCTTTTCTGATTGGAAGAAATATATATGGTTAGTCAAATTCTGCCTAAGTTTCATCACAAGTTCATGTAATAACAACAGTGACAACAGTAAGAAAGAATATTAGTTTATTCAGTGGTGTTGGCTGGGAAGATGATGTCTTGCATCATGTAAATGGCAATGGAGAAGTCTTGATTTGAGTAGTAAGAAGTAACAAAGCGTACATGGGGGGATCTTGCCCCTGTTACCCTTACCCTCGACTATCTTTGGTAAATGCGGGTAAGTTATTAGTGCCTTACTATAGGCAACCTTTTCGGCATTCAATTAGTGTTTGATAGATGACTACCAGATTTTGTTTTGCAAGTTTCAGAATGAGCTGTCTTTGTTTCAATTTTACTTCTTTATGATTAATCCTCTTCTTTCGTCTTCAAATATTGATATATTACGCATCCGTTGACGGTCATCATCACGTACTTCTTGTGCTAGAAGAATTAGAGTTTGATGTGTCATTACACACTTGATAATGTTCGAATCGTACTTTGTAATGGCAGATGCAAGGTGTGTTGAAATTTCTGAAGTTGTCTGCTCCGGATGCTTCTTTGGTTTGCAATGTCTGTTGAAATTTGTGAAGTTGGCTTCTCCAAATACTTCTCTGGTTTCTTATTTTTTATACACTAATTGGCTGGTTAGTAGTGAACTAACTTTAAGATAATTTTATGATTTTTCTTTATGGGAAAAGAGTGAATAGCTCTTTAGCTTTCAAATCTGACTTAGACTTCTTCAGACATTCTTTGATGTGTATTTCATCTTTATATTCTCCTTATCTTTTATCAAATTAAACGATATAACAAACAACAATGTCAGGCACATGTCCGTGCCTCGCACGGGCACACTACATCTAGTAACAAAAGAGAGGGGAAAGCGACTCTGGTGGGGTTGATGGTATCTTCTTCGAATTTGAATTGAATTGAATTCAATGGAGAAGAATATCTGTTAATAAGATTGCAAAAAATAAATGATAAAAATGTTAGAAGAAGACGAAGATTTCCTGGAATCAGAAACACAACTTACTGATGACCAGAAAATTGAGATTGCCAAATGGTTCCTTCTTAATGCCCCAGCCGGCGAAATTCAGTACGTCGCCAAAGGTCTTCTTCTTCTTCTCTTTCGTTTATTTTCTGCGCTAAAGTTTTTTGTATTTTGAAGCTTTTTTCGTGCTTGAAAATGTGACCGCATTGGTGTTCATTTGCGATCGGCAGTTTATTTTTTACATTTTTGGTTTTGAGCGTCATTTGGTTGGATTTGCAGATGTTAGAGCTATTTTAAAGGACGAAAA</genome_strand>
        <mrna_strand>TATCTTCCTCTTTGTTATTCTGAAAAACTTTCTTACTTTCCATGGAAAAAAGTAGATTCATTCTTCTGCCCAGTTTCGGAGACGGAAATTCCTCATAGATTTGCTCCTACGAACAAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCAAGGTGTGTTGAAATTTCTGAAGTTGTCTGCTCCGGATGCTTCTTTGGTTTGCAATGTCTGTTGAAATTTGTGAAGTTGGCTTCTCCAAATACTTCTCTGGTTTCTTATTTTTTATACACTAATTGGCTG...................................................................................................................................................................................GCACATGTCCGTGCCTCGCACGGGCACACTACATCTAGTAACAAAAGAGAGGGGAAAGCGACTCTGGTGGGGTTGATGGTATCTTCTTCGAATTTGAATTGAATTGAATTCAATGGAGAAGAATATCTGTTAATAAGATTGCAAAAAATAAATGATAAAAATGTTAGAAGAAGACGAAGATTTCCTGGAATCAGAAACACAACTTACTGATGACCAGAAAATTGAGATTGCCAAATGGTTCCTTCTTAATGCCCCAGCCGGCGAAATTCAGTACGTCGCCAAAG................................................................................................................................................................ATGTTAGAGCTATTTTAAAGGACGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E208359" ref_strand="+" ref_description="SGN-E208359 [cLEC-37-E22]">
      <seq>tttagctttcaaatctgacttagacttcttcagacattctttgatgtgtatttcatctttatattctccttatcttttatcaaattaaacgatataacaaacaacaatgtcaggcacatgtccgtgcctcgcacgggcacactacatctagtaacaaaagagaggggaaagcgactctggtggggttgatggtatcttcttcgaatttgaattgaattgaattcaatggagaagaatatctgttaataagattgcaaaaaataaatgataaaaatgttagaagaagacgaagatttcctggaatcagaaacacaacttactgatgaccagaaaattgagattgccaaatggttccttcttaatgccccagccggcgaaattcagtacgtcgccaaagatgttagagctattttaaaggacgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="53284" stop="52100"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52984" g_stop="52588" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="397" r_length="397" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52587" i_stop="52428" i_length="160">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52427" g_stop="52400" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="425" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E208359" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52984" e_stop="52588"/>
          <exon e_start="52427" e_stop="52400"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAGCTTTCAAATCTGACTTAGACTTCTTCAGACATTCTTTGATGTGTATTTCATCTTTATATTCTCCTTATCTTTTATCAAATTAAACGATATAACAAACAACAATGTCAGGCACATGTCCGTGCCTCGCACGGGCACACTACATCTAGTAACAAAAGAGAGGGGAAAGCGACTCTGGTGGGGTTGATGGTATCTTCTTCGAATTTGAATTGAATTGAATTCAATGGAGAAGAATATCTGTTAATAAGATTGCAAAAAATAAATGATAAAAATGTTAGAAGAAGACGAAGATTTCCTGGAATCAGAAACACAACTTACTGATGACCAGAAAATTGAGATTGCCAAATGGTTCCTTCTTAATGCCCCAGCCGGCGAAATTCAGTACGTCGCCAAAGGTCTTCTTCTTCTTCTCTTTCGTTTATTTTCTGCGCTAAAGTTTTTTGTATTTTGAAGCTTTTTTCGTGCTTGAAAATGTGACCGCATTGGTGTTCATTTGCGATCGGCAGTTTATTTTTTACATTTTTGGTTTTGAGCGTCATTTGGTTGGATTTGCAGATGTTAGAGCTATTTTAAAGGACGAAAA</genome_strand>
        <mrna_strand>TTTAGCTTTCAAATCTGACTTAGACTTCTTCAGACATTCTTTGATGTGTATTTCATCTTTATATTCTCCTTATCTTTTATCAAATTAAACGATATAACAAACAACAATGTCAGGCACATGTCCGTGCCTCGCACGGGCACACTACATCTAGTAACAAAAGAGAGGGGAAAGCGACTCTGGTGGGGTTGATGGTATCTTCTTCGAATTTGAATTGAATTGAATTCAATGGAGAAGAATATCTGTTAATAAGATTGCAAAAAATAAATGATAAAAATGTTAGAAGAAGACGAAGATTTCCTGGAATCAGAAACACAACTTACTGATGACCAGAAAATTGAGATTGCCAAATGGTTCCTTCTTAATGCCCCAGCCGGCGAAATTCAGTACGTCGCCAAAG................................................................................................................................................................ATGTTAGAGCTATTTTAAAGGACGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E236345" ref_strand="+" ref_description="SGN-E236345 [cLED-13-G17]">
      <seq>ttctgcccagtttcggagacggaaattcctcatagatttgctcctacgaacaaaaagatgcaaggtgtgttgaaatttctgaagttgtctgctccggatgcttctttggtttgcaatgtctgttgaaatttgtgaagttggcttctccaaatacttctctggtttcttattttttatacactaattggctggcacatgtccgtgcctcgcacgggcacactacatctagtaacaaaagagaggggaaagcgactctggtggggttgatggtatcttcttcgaatttgaattgaattgaattcaatggagaagaatatctgttaataagattgcaaaaaataaatgataaaaatgttagaagaagacgaagatttcctggaatcagaaacacaacttactgatgaccagaaaattgagattgccaaatggttccttcttaatgccccagccggcgaaattcagtacgtcgccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="56293" stop="52290"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55993" g_stop="55937" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55936" i_stop="53185" i_length="2752">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53184" g_stop="53051" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="191" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53050" i_stop="52872" i_length="179">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.912" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52871" g_stop="52590" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="473" r_length="282" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E236345" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E236345" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55993" e_stop="55937"/>
          <exon e_start="53184" e_stop="53051"/>
          <exon e_start="52871" e_stop="52590"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTGCCCAGTTTCGGAGACGGAAATTCCTCATAGATTTGCTCCTACGAACAAAAAGGTACACTCCTTTGTTTGGTTTGTTGCTTGCTTCTCATTCGTTGATCTTCTGGGTTTTCCTTCCAATCGGATCTACCAAATTCGCCTTCATTTGCTTGATTTATGTGTTGTTTAATCATTAATGTTGTATTTGCTAATATGAATTGTTACCTGCCGCTTAGACTTAGTGTTAATTTGGTTGGTTTGTTGAATCCGCAAAATATCTCTTGCACTTTGGTTTACTCGCTTTGCTTCTTCATTTCAGTATTCCCAATTTGTAATCATTATAGCTTGCTAAAATTAGTTGTTTTGCTATGTGTTTCAACATCCACGGAAAGGGCTCTGCGCTCTGGATCTAAAATTTTCTCCGCTGCTATTCTAGAATGTTTACTTTTATACTATGTGTGTCAGTTTGATTTCTTGGCTAAATTCAGAAAAGAAGGATTTTCTGCTGATTTAGCCGACCACAGAAGCTTTAACTTGAGTAGTTGTGATATTGGTTTGTGGTTCTAACTACAGTATTACTGATTTTTGTTAAAACTATGGAAAGGTAGGCGATTACTTGCACTTACGCCTATACTCCTCATGTTTACCTCCACCTTTTGATAGTACAAGCTATATGATAGAATTGATGGCCTTGAGGTGTTTGATATAATTGATATAAAGTTATGTATATACAATTATTTTAGAAATAAAACATAGTTAAGCATTTGATTTGTTAAATTTATCATGCTCACTACGTGTTCGACAATTTGTTTGGAAGAAAAAATGGAGTATTCATCAATAATAATAAAATGTTTAAAACATATGAATACTCAAGACTGAACTAACTCACTAACTTGTCTATCTATGTGACCTCTACTAACTGAACTACTAAACTAGAGCCCTCCAGAGAGTGAAGAGGTCTCACGAAATATATTCTGTAATACCCAAACACATTTACTACCCATGGGGATCCCCGAGTAGTTTACCAGACAAATTGAGTTGTGGGCAACATCGAAGATTCTCTTCACCATCTAGGCTATGGAAGAGATTACTATAGAGATAGATGAAAGATTGTTTAGTCAATGGGTGTGAATTATCACTACACTTGCAACTACTATGTCGTAGTCGATATGAACTTAGTATATGTGTATTTTAAATTGCTCAAATTAGTGTATAGAGAGTTGAGGGTGGTACGGCTGCCACACCACATCTTACCTGGGGTTGGTGATAGTTTCACAGATTACTTTGACTGTAGTTTGATATATAATATCTGATGCTTTTGTTTTGTGAGTATCAGAATGAACTGTCTTTGTTTCGATTTTACTTCCTTATGATTAATCCTCTTCTTTCGTCTTTAAATATTGACATATTAGGCATGCTTTGACTGTCCTATCATTACGTACTTCTTGTGCTAGAAGATGTAACATTCTTCACCTTTTTGGTTTGCCTCCTGTAACGTGAAAATTTTTTGGTAGATAATTGAACATAACAGGCTGTGTTATCCTTATAGATGTTAACAAACAGCATATCTTGAGCCCATATGCAATATTGCGAGGTGCTGATAAAGTTTCATTATTACGTACGTGTGATCATATGAATAAATCTGAACGTGTAGTTGAACAGAAGGAACACTTCTCTAAGTGAAGCGAAGGAAAAAGCTCTCTAAGAGCAAAAAATTTATTCGAAGAGAACAACTTCTATGTGGAAGTCAATAGTCCAGAATGTACATAATAGTAAGTTCTTAAATGAACTACTAAGCATCATTAGCAGCTGAGGCAAAATATAGACATCTAAATATCAAAATAATACGATCGTGTGAATTGGAGTTTCTTTAAGGATATTGAAGCTCGTGGGATTCAGGCAAAAGTAAGTAAGTTGGAACAGTATGTGCATCTATGCTATCAAACTATCAATTGTAGTTTATTTCAGCAGAGGAGTTTTCTCCCCTCATAGAGGATACGCAAGGAGACCATTGTCTTTTTTTTTTTGCTTTAATGATGAATGGAGGATCAGAACAAAATGCTGAAATAAGCTGTACAATTGAGCTGGATTAGGGGTTATTAGGTGGGCAGGAAGGAAAAATAACTGAAGTGGTGTCTCAACTCTCATAAATTATGCTAATGACACACTGATAATGCGTGTCCAGCAGACGGGACAGTTGGAGTATTTTAGAGTAATGTAGTTATTTTTATGGCTTGGTGCTTGAGGTGTTAAATGGTTTTGTAAAAATTGATGTTTTAATTCAATTTTTACGATTTGCACCTTTTCTGATTGGAAGAAATATATATGGTTAGTCAAATTCTGCCTAAGTTTCATCACAAGTTCATGTAATAACAACAGTGACAACAGTAAGAAAGAATATTAGTTTATTCAGTGGTGTTGGCTGGGAAGATGATGTCTTGCATCATGTAAATGGCAATGGAGAAGTCTTGATTTGAGTAGTAAGAAGTAACAAAGCGTACATGGGGGGATCTTGCCCCTGTTACCCTTACCCTCGACTATCTTTGGTAAATGCGGGTAAGTTATTAGTGCCTTACTATAGGCAACCTTTTCGGCATTCAATTAGTGTTTGATAGATGACTACCAGATTTTGTTTTGCAAGTTTCAGAATGAGCTGTCTTTGTTTCAATTTTACTTCTTTATGATTAATCCTCTTCTTTCGTCTTCAAATATTGATATATTACGCATCCGTTGACGGTCATCATCACGTACTTCTTGTGCTAGAAGAATTAGAGTTTGATGTGTCATTACACACTTGATAATGTTCGAATCGTACTTTGTAATGGCAGATGCAAGGTGTGTTGAAATTTCTGAAGTTGTCTGCTCCGGATGCTTCTTTGGTTTGCAATGTCTGTTGAAATTTGTGAAGTTGGCTTCTCCAAATACTTCTCTGGTTTCTTATTTTTTATACACTAATTGGCTGGTTAGTAGTGAACTAACTTTAAGATAATTTTATGATTTTTCTTTATGGGAAAAGAGTGAATAGCTCTTTAGCTTTCAAATCTGACTTAGACTTCTTCAGACATTCTTTGATGTGTATTTCATCTTTATATTCTCCTTATCTTTTATCAAATTAAACGATATAACAAACAACAATGTCAGGCACATGTCCGTGCCTCGCACGGGCACACTACATCTAGTAACAAAAGAGAGGGGAAAGCGACTCTGGTGGGGTTGATGGTATCTTCTTCGAATTTGAATTGAATTGAATTCAATGGAGAAGAATATCTGTTAATAAGATTGCAAAAAATAAATGATAAAAATGTTAGAAGAAGACGAAGATTTCCTGGAATCAGAAACACAACTTACTGATGACCAGAAAATTGAGATTGCCAAATGGTTCCTTCTTAATGCCCCAGCCGGCGAAATTCAGTACGTCGCCAA</genome_strand>
        <mrna_strand>TTCTGCCCAGTTTCGGAGACGGAAATTCCTCATAGATTTGCTCCTACGAACAAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCAAGGTGTGTTGAAATTTCTGAAGTTGTCTGCTCCGGATGCTTCTTTGGTTTGCAATGTCTGTTGAAATTTGTGAAGTTGGCTTCTCCAAATACTTCTCTGGTTTCTTATTTTTTATACACTAATTGGCTG...................................................................................................................................................................................GCACATGTCCGTGCCTCGCACGGGCACACTACATCTAGTAACAAAAGAGAGGGGAAAGCGACTCTGGTGGGGTTGATGGTATCTTCTTCGAATTTGAATTGAATTGAATTCAATGGAGAAGAATATCTGTTAATAAGATTGCAAAAAATAAATGATAAAAATGTTAGAAGAAGACGAAGATTTCCTGGAATCAGAAACACAACTTACTGATGACCAGAAAATTGAGATTGCCAAATGGTTCCTTCTTAATGCCCCAGCCGGCGAAATTCAGTACGTCGCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E310166" ref_strand="+" ref_description="SGN-E310166 [cLEZ-8-E10]">
      <seq>tgaaaaactttcttactttccatggaaaaaagtagattcattcttctgcccagtttcggagacggaaattcctcatagatttgctcctacgaacaaaaagatgcaaggtgtgttgaaatttctgaagttgtctgctccggatgcttctttggtttgcaatgtctgttgaaatttgtgaagttggcttctccaaatacttctctggtttcttattttttatacactaattggctggcacatgtccgtgcctcgcacgggcacactacatctagtaacaaaagagaggggaaagcgactctggtggggttgatggtatcttcttcgaatttgaattgaattgaattcaatggagaagaatatctgttaataagattgcaaaaaataaatgataaaaatgttagaagaagacgaagatttcctggaatcagaaacacaacttactgatgaccagaaaattgagattgccaaatggttccttcttaatgccccagccggcgaaattcagtacgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="56336" stop="52295"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56036" g_stop="55937" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55936" i_stop="53185" i_length="2752">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53184" g_stop="53051" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="234" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53050" i_stop="52872" i_length="179">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.912" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52871" g_stop="52595" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="511" r_length="277" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E310166" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310166" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56036" e_stop="55937"/>
          <exon e_start="53184" e_stop="53051"/>
          <exon e_start="52871" e_stop="52595"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAAACTTTCTTACTTTCCATGGAAAAAAGTAGATTCATTCTTCTGCCCAGTTTCGGAGACGGAAATTCCTCATAGATTTGCTCCTACGAACAAAAAGGTACACTCCTTTGTTTGGTTTGTTGCTTGCTTCTCATTCGTTGATCTTCTGGGTTTTCCTTCCAATCGGATCTACCAAATTCGCCTTCATTTGCTTGATTTATGTGTTGTTTAATCATTAATGTTGTATTTGCTAATATGAATTGTTACCTGCCGCTTAGACTTAGTGTTAATTTGGTTGGTTTGTTGAATCCGCAAAATATCTCTTGCACTTTGGTTTACTCGCTTTGCTTCTTCATTTCAGTATTCCCAATTTGTAATCATTATAGCTTGCTAAAATTAGTTGTTTTGCTATGTGTTTCAACATCCACGGAAAGGGCTCTGCGCTCTGGATCTAAAATTTTCTCCGCTGCTATTCTAGAATGTTTACTTTTATACTATGTGTGTCAGTTTGATTTCTTGGCTAAATTCAGAAAAGAAGGATTTTCTGCTGATTTAGCCGACCACAGAAGCTTTAACTTGAGTAGTTGTGATATTGGTTTGTGGTTCTAACTACAGTATTACTGATTTTTGTTAAAACTATGGAAAGGTAGGCGATTACTTGCACTTACGCCTATACTCCTCATGTTTACCTCCACCTTTTGATAGTACAAGCTATATGATAGAATTGATGGCCTTGAGGTGTTTGATATAATTGATATAAAGTTATGTATATACAATTATTTTAGAAATAAAACATAGTTAAGCATTTGATTTGTTAAATTTATCATGCTCACTACGTGTTCGACAATTTGTTTGGAAGAAAAAATGGAGTATTCATCAATAATAATAAAATGTTTAAAACATATGAATACTCAAGACTGAACTAACTCACTAACTTGTCTATCTATGTGACCTCTACTAACTGAACTACTAAACTAGAGCCCTCCAGAGAGTGAAGAGGTCTCACGAAATATATTCTGTAATACCCAAACACATTTACTACCCATGGGGATCCCCGAGTAGTTTACCAGACAAATTGAGTTGTGGGCAACATCGAAGATTCTCTTCACCATCTAGGCTATGGAAGAGATTACTATAGAGATAGATGAAAGATTGTTTAGTCAATGGGTGTGAATTATCACTACACTTGCAACTACTATGTCGTAGTCGATATGAACTTAGTATATGTGTATTTTAAATTGCTCAAATTAGTGTATAGAGAGTTGAGGGTGGTACGGCTGCCACACCACATCTTACCTGGGGTTGGTGATAGTTTCACAGATTACTTTGACTGTAGTTTGATATATAATATCTGATGCTTTTGTTTTGTGAGTATCAGAATGAACTGTCTTTGTTTCGATTTTACTTCCTTATGATTAATCCTCTTCTTTCGTCTTTAAATATTGACATATTAGGCATGCTTTGACTGTCCTATCATTACGTACTTCTTGTGCTAGAAGATGTAACATTCTTCACCTTTTTGGTTTGCCTCCTGTAACGTGAAAATTTTTTGGTAGATAATTGAACATAACAGGCTGTGTTATCCTTATAGATGTTAACAAACAGCATATCTTGAGCCCATATGCAATATTGCGAGGTGCTGATAAAGTTTCATTATTACGTACGTGTGATCATATGAATAAATCTGAACGTGTAGTTGAACAGAAGGAACACTTCTCTAAGTGAAGCGAAGGAAAAAGCTCTCTAAGAGCAAAAAATTTATTCGAAGAGAACAACTTCTATGTGGAAGTCAATAGTCCAGAATGTACATAATAGTAAGTTCTTAAATGAACTACTAAGCATCATTAGCAGCTGAGGCAAAATATAGACATCTAAATATCAAAATAATACGATCGTGTGAATTGGAGTTTCTTTAAGGATATTGAAGCTCGTGGGATTCAGGCAAAAGTAAGTAAGTTGGAACAGTATGTGCATCTATGCTATCAAACTATCAATTGTAGTTTATTTCAGCAGAGGAGTTTTCTCCCCTCATAGAGGATACGCAAGGAGACCATTGTCTTTTTTTTTTTGCTTTAATGATGAATGGAGGATCAGAACAAAATGCTGAAATAAGCTGTACAATTGAGCTGGATTAGGGGTTATTAGGTGGGCAGGAAGGAAAAATAACTGAAGTGGTGTCTCAACTCTCATAAATTATGCTAATGACACACTGATAATGCGTGTCCAGCAGACGGGACAGTTGGAGTATTTTAGAGTAATGTAGTTATTTTTATGGCTTGGTGCTTGAGGTGTTAAATGGTTTTGTAAAAATTGATGTTTTAATTCAATTTTTACGATTTGCACCTTTTCTGATTGGAAGAAATATATATGGTTAGTCAAATTCTGCCTAAGTTTCATCACAAGTTCATGTAATAACAACAGTGACAACAGTAAGAAAGAATATTAGTTTATTCAGTGGTGTTGGCTGGGAAGATGATGTCTTGCATCATGTAAATGGCAATGGAGAAGTCTTGATTTGAGTAGTAAGAAGTAACAAAGCGTACATGGGGGGATCTTGCCCCTGTTACCCTTACCCTCGACTATCTTTGGTAAATGCGGGTAAGTTATTAGTGCCTTACTATAGGCAACCTTTTCGGCATTCAATTAGTGTTTGATAGATGACTACCAGATTTTGTTTTGCAAGTTTCAGAATGAGCTGTCTTTGTTTCAATTTTACTTCTTTATGATTAATCCTCTTCTTTCGTCTTCAAATATTGATATATTACGCATCCGTTGACGGTCATCATCACGTACTTCTTGTGCTAGAAGAATTAGAGTTTGATGTGTCATTACACACTTGATAATGTTCGAATCGTACTTTGTAATGGCAGATGCAAGGTGTGTTGAAATTTCTGAAGTTGTCTGCTCCGGATGCTTCTTTGGTTTGCAATGTCTGTTGAAATTTGTGAAGTTGGCTTCTCCAAATACTTCTCTGGTTTCTTATTTTTTATACACTAATTGGCTGGTTAGTAGTGAACTAACTTTAAGATAATTTTATGATTTTTCTTTATGGGAAAAGAGTGAATAGCTCTTTAGCTTTCAAATCTGACTTAGACTTCTTCAGACATTCTTTGATGTGTATTTCATCTTTATATTCTCCTTATCTTTTATCAAATTAAACGATATAACAAACAACAATGTCAGGCACATGTCCGTGCCTCGCACGGGCACACTACATCTAGTAACAAAAGAGAGGGGAAAGCGACTCTGGTGGGGTTGATGGTATCTTCTTCGAATTTGAATTGAATTGAATTCAATGGAGAAGAATATCTGTTAATAAGATTGCAAAAAATAAATGATAAAAATGTTAGAAGAAGACGAAGATTTCCTGGAATCAGAAACACAACTTACTGATGACCAGAAAATTGAGATTGCCAAATGGTTCCTTCTTAATGCCCCAGCCGGCGAAATTCAGTACGTC</genome_strand>
        <mrna_strand>TGAAAAACTTTCTTACTTTCCATGGAAAAAAGTAGATTCATTCTTCTGCCCAGTTTCGGAGACGGAAATTCCTCATAGATTTGCTCCTACGAACAAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCAAGGTGTGTTGAAATTTCTGAAGTTGTCTGCTCCGGATGCTTCTTTGGTTTGCAATGTCTGTTGAAATTTGTGAAGTTGGCTTCTCCAAATACTTCTCTGGTTTCTTATTTTTTATACACTAATTGGCTG...................................................................................................................................................................................GCACATGTCCGTGCCTCGCACGGGCACACTACATCTAGTAACAAAAGAGAGGGGAAAGCGACTCTGGTGGGGTTGATGGTATCTTCTTCGAATTTGAATTGAATTGAATTCAATGGAGAAGAATATCTGTTAATAAGATTGCAAAAAATAAATGATAAAAATGTTAGAAGAAGACGAAGATTTCCTGGAATCAGAAACACAACTTACTGATGACCAGAAAATTGAGATTGCCAAATGGTTCCTTCTTAATGCCCCAGCCGGCGAAATTCAGTACGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E313374" ref_strand="+" ref_description="SGN-E313374 [cTOA-13-A15]">
      <seq>aaaagagaggggaaagcgactctggtggggttatggtatcttcttcgaatttgaattgaattgaattcaatggagaagaatatctgttaataagataaaaatgttagaagaagacgaagattttctggaatcagaaactcaacttaccgatgaccagaaaattgagattgccaaatggttccttcttaatgcccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="53129" stop="52317"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52829" g_stop="52617" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="195" r_length="195" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E313374" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>213</cumulative_length_of_scored_exons>
        <coverage percentage="1.092" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313374" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52829" e_stop="52617"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGAGAGGGGAAAGCGACTCTGGTGGGGTTGATGGTATCTTCTTCGAATTTGAATTGAATTGAATTCAATGGAGAAGAATATCTGTTAATAAGATTGCAAAAAATAAATGATAAAAATGTTAGAAGAAGACGAAGATTTCCTGGAATCAGAAACACAACTTACTGATGACCAGAAAATTGAGATTGCCAAATGGTTCCTTCTTAATGCCCC</genome_strand>
        <mrna_strand>AAAAGAGAGGGGAAAGCGACTCTGGTGGGGTT-ATGGTATCTTCTTCGAATTTGAATTGAATTGAATTCAATGGAGAAGAATATCTGTTAATAAGA-T------AA-AAATG-T-----T---AGAAGAAGACGAAGATTTTCTGGAATCAGAAACTCAACTTACCGATGACCAGAAAATTGAGATTGCCAAATGGTTCCTTCTTAATGCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E337668" ref_strand="+" ref_description="SGN-E337668 [cTOE-17-F15]">
      <seq>ttttatcttcctctttgttattctgaaaaactttcttactttccatggaaaaaagtagattcattcttctgcccagtttcggagacggaaattcctcatagatttgctcctacgaacaaaaagatgcaaggtgtgttgaaatttctgaagttgtctgctccggatgcttctttggtttgcaatgtctgttgaaatttgtgaagttggcttctccaaatacttctctggtttcttattttttatacactaattggctggcacatgtccgtgcctcgcacgggcacactacatctagtaacaaaagagaggggaaagcgactctggtggggttgatggtatcttcttcgaatttgaattgaattgaattcaatggagaaaaatttctgttaataagattgctaaaaataaatgataaaaatgttagaagaagacgaagatttcctggaatcagaaacacaacttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="56359" stop="52364"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56059" g_stop="55937" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55936" i_stop="53185" i_length="2752">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53184" g_stop="53051" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="257" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53050" i_stop="52872" i_length="179">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.912" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52871" g_stop="52664" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="465" r_length="208" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E337668" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337668" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56059" e_stop="55937"/>
          <exon e_start="53184" e_stop="53051"/>
          <exon e_start="52871" e_stop="52664"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATCTTCCTCTTTGTTATTCTGAAAAACTTTCTTACTTTCCATGGAAAAAAGTAGATTCATTCTTCTGCCCAGTTTCGGAGACGGAAATTCCTCATAGATTTGCTCCTACGAACAAAAAGGTACACTCCTTTGTTTGGTTTGTTGCTTGCTTCTCATTCGTTGATCTTCTGGGTTTTCCTTCCAATCGGATCTACCAAATTCGCCTTCATTTGCTTGATTTATGTGTTGTTTAATCATTAATGTTGTATTTGCTAATATGAATTGTTACCTGCCGCTTAGACTTAGTGTTAATTTGGTTGGTTTGTTGAATCCGCAAAATATCTCTTGCACTTTGGTTTACTCGCTTTGCTTCTTCATTTCAGTATTCCCAATTTGTAATCATTATAGCTTGCTAAAATTAGTTGTTTTGCTATGTGTTTCAACATCCACGGAAAGGGCTCTGCGCTCTGGATCTAAAATTTTCTCCGCTGCTATTCTAGAATGTTTACTTTTATACTATGTGTGTCAGTTTGATTTCTTGGCTAAATTCAGAAAAGAAGGATTTTCTGCTGATTTAGCCGACCACAGAAGCTTTAACTTGAGTAGTTGTGATATTGGTTTGTGGTTCTAACTACAGTATTACTGATTTTTGTTAAAACTATGGAAAGGTAGGCGATTACTTGCACTTACGCCTATACTCCTCATGTTTACCTCCACCTTTTGATAGTACAAGCTATATGATAGAATTGATGGCCTTGAGGTGTTTGATATAATTGATATAAAGTTATGTATATACAATTATTTTAGAAATAAAACATAGTTAAGCATTTGATTTGTTAAATTTATCATGCTCACTACGTGTTCGACAATTTGTTTGGAAGAAAAAATGGAGTATTCATCAATAATAATAAAATGTTTAAAACATATGAATACTCAAGACTGAACTAACTCACTAACTTGTCTATCTATGTGACCTCTACTAACTGAACTACTAAACTAGAGCCCTCCAGAGAGTGAAGAGGTCTCACGAAATATATTCTGTAATACCCAAACACATTTACTACCCATGGGGATCCCCGAGTAGTTTACCAGACAAATTGAGTTGTGGGCAACATCGAAGATTCTCTTCACCATCTAGGCTATGGAAGAGATTACTATAGAGATAGATGAAAGATTGTTTAGTCAATGGGTGTGAATTATCACTACACTTGCAACTACTATGTCGTAGTCGATATGAACTTAGTATATGTGTATTTTAAATTGCTCAAATTAGTGTATAGAGAGTTGAGGGTGGTACGGCTGCCACACCACATCTTACCTGGGGTTGGTGATAGTTTCACAGATTACTTTGACTGTAGTTTGATATATAATATCTGATGCTTTTGTTTTGTGAGTATCAGAATGAACTGTCTTTGTTTCGATTTTACTTCCTTATGATTAATCCTCTTCTTTCGTCTTTAAATATTGACATATTAGGCATGCTTTGACTGTCCTATCATTACGTACTTCTTGTGCTAGAAGATGTAACATTCTTCACCTTTTTGGTTTGCCTCCTGTAACGTGAAAATTTTTTGGTAGATAATTGAACATAACAGGCTGTGTTATCCTTATAGATGTTAACAAACAGCATATCTTGAGCCCATATGCAATATTGCGAGGTGCTGATAAAGTTTCATTATTACGTACGTGTGATCATATGAATAAATCTGAACGTGTAGTTGAACAGAAGGAACACTTCTCTAAGTGAAGCGAAGGAAAAAGCTCTCTAAGAGCAAAAAATTTATTCGAAGAGAACAACTTCTATGTGGAAGTCAATAGTCCAGAATGTACATAATAGTAAGTTCTTAAATGAACTACTAAGCATCATTAGCAGCTGAGGCAAAATATAGACATCTAAATATCAAAATAATACGATCGTGTGAATTGGAGTTTCTTTAAGGATATTGAAGCTCGTGGGATTCAGGCAAAAGTAAGTAAGTTGGAACAGTATGTGCATCTATGCTATCAAACTATCAATTGTAGTTTATTTCAGCAGAGGAGTTTTCTCCCCTCATAGAGGATACGCAAGGAGACCATTGTCTTTTTTTTTTTGCTTTAATGATGAATGGAGGATCAGAACAAAATGCTGAAATAAGCTGTACAATTGAGCTGGATTAGGGGTTATTAGGTGGGCAGGAAGGAAAAATAACTGAAGTGGTGTCTCAACTCTCATAAATTATGCTAATGACACACTGATAATGCGTGTCCAGCAGACGGGACAGTTGGAGTATTTTAGAGTAATGTAGTTATTTTTATGGCTTGGTGCTTGAGGTGTTAAATGGTTTTGTAAAAATTGATGTTTTAATTCAATTTTTACGATTTGCACCTTTTCTGATTGGAAGAAATATATATGGTTAGTCAAATTCTGCCTAAGTTTCATCACAAGTTCATGTAATAACAACAGTGACAACAGTAAGAAAGAATATTAGTTTATTCAGTGGTGTTGGCTGGGAAGATGATGTCTTGCATCATGTAAATGGCAATGGAGAAGTCTTGATTTGAGTAGTAAGAAGTAACAAAGCGTACATGGGGGGATCTTGCCCCTGTTACCCTTACCCTCGACTATCTTTGGTAAATGCGGGTAAGTTATTAGTGCCTTACTATAGGCAACCTTTTCGGCATTCAATTAGTGTTTGATAGATGACTACCAGATTTTGTTTTGCAAGTTTCAGAATGAGCTGTCTTTGTTTCAATTTTACTTCTTTATGATTAATCCTCTTCTTTCGTCTTCAAATATTGATATATTACGCATCCGTTGACGGTCATCATCACGTACTTCTTGTGCTAGAAGAATTAGAGTTTGATGTGTCATTACACACTTGATAATGTTCGAATCGTACTTTGTAATGGCAGATGCAAGGTGTGTTGAAATTTCTGAAGTTGTCTGCTCCGGATGCTTCTTTGGTTTGCAATGTCTGTTGAAATTTGTGAAGTTGGCTTCTCCAAATACTTCTCTGGTTTCTTATTTTTTATACACTAATTGGCTGGTTAGTAGTGAACTAACTTTAAGATAATTTTATGATTTTTCTTTATGGGAAAAGAGTGAATAGCTCTTTAGCTTTCAAATCTGACTTAGACTTCTTCAGACATTCTTTGATGTGTATTTCATCTTTATATTCTCCTTATCTTTTATCAAATTAAACGATATAACAAACAACAATGTCAGGCACATGTCCGTGCCTCGCACGGGCACACTACATCTAGTAACAAAAGAGAGGGGAAAGCGACTCTGGTGGGGTTGATGGTATCTTCTTCGAATTTGAATTGAATTGAATTCAATGGAGAAGAATATCTGTTAATAAGATTGCAAAAAATAAATGATAAAAATGTTAGAAGAAGACGAAGATTTCCTGGAATCAGAAACACAACTTACT</genome_strand>
        <mrna_strand>TTTTATCTTCCTCTTTGTTATTCTGAAAAACTTTCTTACTTTCCATGGAAAAAAGTAGATTCATTCTTCTGCCCAGTTTCGGAGACGGAAATTCCTCATAGATTTGCTCCTACGAACAAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCAAGGTGTGTTGAAATTTCTGAAGTTGTCTGCTCCGGATGCTTCTTTGGTTTGCAATGTCTGTTGAAATTTGTGAAGTTGGCTTCTCCAAATACTTCTCTGGTTTCTTATTTTTTATACACTAATTGGCTG...................................................................................................................................................................................GCACATGTCCGTGCCTCGCACGGGCACACTACATCTAGTAACAAAAGAGAGGGGAAAGCGACTCTGGTGGGGTTGATGGTATCTTCTTCGAATTTGAATTGAATTGAATTCAATGGAGAAAAATTTCTGTTAATAAGATTGCTAAAAATAAATGATAAAAATGTTAGAAGAAGACGAAGATTTCCTGGAATCAGAAACACAACTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E542196" ref_strand="+" ref_description="SGN-E542196 [TUS-63-G3](-)">
      <seq>aatgcgggtaagttattagtgccttactataggcaaccttttcggcattcaattagtgtttgatagatgactaccagattttgttttgcaagtttcagaatgagctgtctttgtttcaattttacttctttatgattaatcctcttctttcgtcttcaaatattgatatattacgcatccgttgacggtcatcatcacgtacttcttgtgctagaagaattagagtttgatgtgtcattacacacttgataatgttcgaatcgtactttgtaatggcagatgcaaggtgtgttgaaatttctgaagttgtctgctccggatgcttctttggtttgcaatgtctgttgaaatttgtgaagttggcttctccaaatacttctctggtttcttattttttatacactaattggctggttagtagtgaactaactttaagataattttatgatttttctttatgggaaaagagtgaatagctctttagctttcaaatctgacttagacttcttcagacattctttgatgtgtatttcatctttatattctccttatcttttatcaaattaaacgatataacaaacaacaatgtcaggcacatgtccgtgcctcgcacgggcacactacatctagtaacaaaagagaggggaaagcgactctggtggggttgatggtatcttcttcgaatttgaattgaattgaattcaatggagagagaatatctgttaataagattgcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="53763" stop="52420"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53463" g_stop="52718" g_length="746"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="747" r_length="747" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E542196" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>746</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E542196" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53463" e_stop="52718"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGCGGGTAAGTTATTAGTGCCTTACTATAGGCAACCTTTTCGGCATTCAATTAGTGTTTGATAGATGACTACCAGATTTTGTTTTGCAAGTTTCAGAATGAGCTGTCTTTGTTTCAATTTTACTTCTTTATGATTAATCCTCTTCTTTCGTCTTCAAATATTGATATATTACGCATCCGTTGACGGTCATCATCACGTACTTCTTGTGCTAGAAGAATTAGAGTTTGATGTGTCATTACACACTTGATAATGTTCGAATCGTACTTTGTAATGGCAGATGCAAGGTGTGTTGAAATTTCTGAAGTTGTCTGCTCCGGATGCTTCTTTGGTTTGCAATGTCTGTTGAAATTTGTGAAGTTGGCTTCTCCAAATACTTCTCTGGTTTCTTATTTTTTATACACTAATTGGCTGGTTAGTAGTGAACTAACTTTAAGATAATTTTATGATTTTTCTTTATGGGAAAAGAGTGAATAGCTCTTTAGCTTTCAAATCTGACTTAGACTTCTTCAGACATTCTTTGATGTGTATTTCATCTTTATATTCTCCTTATCTTTTATCAAATTAAACGATATAACAAACAACAATGTCAGGCACATGTCCGTGCCTCGCACGGGCACACTACATCTAGTAACAAAAGAGAGGGGAAAGCGACTCTGGTGGGGTTGATGGTATCTTCTTCGAATTTGAATTGAATTGAATTCAATGGAGA-AGAATATCTGTTAATAAGATTGCAAAAAATAAATG</genome_strand>
        <mrna_strand>AATGCGGGTAAGTTATTAGTGCCTTACTATAGGCAACCTTTTCGGCATTCAATTAGTGTTTGATAGATGACTACCAGATTTTGTTTTGCAAGTTTCAGAATGAGCTGTCTTTGTTTCAATTTTACTTCTTTATGATTAATCCTCTTCTTTCGTCTTCAAATATTGATATATTACGCATCCGTTGACGGTCATCATCACGTACTTCTTGTGCTAGAAGAATTAGAGTTTGATGTGTCATTACACACTTGATAATGTTCGAATCGTACTTTGTAATGGCAGATGCAAGGTGTGTTGAAATTTCTGAAGTTGTCTGCTCCGGATGCTTCTTTGGTTTGCAATGTCTGTTGAAATTTGTGAAGTTGGCTTCTCCAAATACTTCTCTGGTTTCTTATTTTTTATACACTAATTGGCTGGTTAGTAGTGAACTAACTTTAAGATAATTTTATGATTTTTCTTTATGGGAAAAGAGTGAATAGCTCTTTAGCTTTCAAATCTGACTTAGACTTCTTCAGACATTCTTTGATGTGTATTTCATCTTTATATTCTCCTTATCTTTTATCAAATTAAACGATATAACAAACAACAATGTCAGGCACATGTCCGTGCCTCGCACGGGCACACTACATCTAGTAACAAAAGAGAGGGGAAAGCGACTCTGGTGGGGTTGATGGTATCTTCTTCGAATTTGAATTGAATTGAATTCAATGGAGAGAGAATATCTGTTAATAAGATTGCAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E542198" ref_strand="+" ref_description="SGN-E542198 [TUS-63-G3]">
      <seq>ctcacgaaatatattctgtaatacccaaacacatttactacccatggggatccccgagtagtttaccagacaaattgagttgtgggcaacatcgaagattctcttcaccatctaggctatggaagagattactatagagatagatgaaagattgtttagtcaatgggtgtgaattatcactacacttgcaactactatgtcgtagtcgatatgaacttagtatatgtgtattttaaattgctcaaattagtgtatagagagttgagggtggtacggctgccacaccacatcttacctggggttggtgatagtttcacagattactttgactgtagtttgatatataatatctgatgcttttgttttgtgagtatcagaatgaactgtctttgtttcgattttacttccttatgattaatcctcttctttcgtctttaaatattgacatattaggcatgctttgactgtcctatcattacgtacttcttgtgctagaagatgtaacattcttcacctttttggtttgcctcctgtaacgtgaaaattttttggtagataattgaacataacaggctgtgttatccttatagatgttaaacaacagcatatcttgagcccatatgcaatattgcgaggtgctgataaagttcattattacgtacgtgtgatcatatgaataaatctgaacgtgtagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="55353" stop="54057"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55053" g_stop="54357" g_length="697"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="696" r_length="696" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E542198" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E542198" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55053" e_stop="54357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCACGAAATATATTCTGTAATACCCAAACACATTTACTACCCATGGGGATCCCCGAGTAGTTTACCAGACAAATTGAGTTGTGGGCAACATCGAAGATTCTCTTCACCATCTAGGCTATGGAAGAGATTACTATAGAGATAGATGAAAGATTGTTTAGTCAATGGGTGTGAATTATCACTACACTTGCAACTACTATGTCGTAGTCGATATGAACTTAGTATATGTGTATTTTAAATTGCTCAAATTAGTGTATAGAGAGTTGAGGGTGGTACGGCTGCCACACCACATCTTACCTGGGGTTGGTGATAGTTTCACAGATTACTTTGACTGTAGTTTGATATATAATATCTGATGCTTTTGTTTTGTGAGTATCAGAATGAACTGTCTTTGTTTCGATTTTACTTCCTTATGATTAATCCTCTTCTTTCGTCTTTAAATATTGACATATTAGGCATGCTTTGACTGTCCTATCATTACGTACTTCTTGTGCTAGAAGATGTAACATTCTTCACCTTTTTGGTTTGCCTCCTGTAACGTGAAAATTTTTTGGTAGATAATTGAACATAACAGGCTGTGTTATCCTTATAGATGTTAACAAACAGCATATCTTGAGCCCATATGCAATATTGCGAGGTGCTGATAAAGTTTCATTATTACGTACGTGTGATCATATGAATAAATCTGAACGTGTAGTT</genome_strand>
        <mrna_strand>CTCACGAAATATATTCTGTAATACCCAAACACATTTACTACCCATGGGGATCCCCGAGTAGTTTACCAGACAAATTGAGTTGTGGGCAACATCGAAGATTCTCTTCACCATCTAGGCTATGGAAGAGATTACTATAGAGATAGATGAAAGATTGTTTAGTCAATGGGTGTGAATTATCACTACACTTGCAACTACTATGTCGTAGTCGATATGAACTTAGTATATGTGTATTTTAAATTGCTCAAATTAGTGTATAGAGAGTTGAGGGTGGTACGGCTGCCACACCACATCTTACCTGGGGTTGGTGATAGTTTCACAGATTACTTTGACTGTAGTTTGATATATAATATCTGATGCTTTTGTTTTGTGAGTATCAGAATGAACTGTCTTTGTTTCGATTTTACTTCCTTATGATTAATCCTCTTCTTTCGTCTTTAAATATTGACATATTAGGCATGCTTTGACTGTCCTATCATTACGTACTTCTTGTGCTAGAAGATGTAACATTCTTCACCTTTTTGGTTTGCCTCCTGTAACGTGAAAATTTTTTGGTAGATAATTGAACATAACAGGCTGTGTTATCCTTATAGATGTTAAACAACAGCATATCTTGAGCCCATATGCAATATTGCGAGGTGCTGATAAAG-TTCATTATTACGTACGTGTGATCATATGAATAAATCTGAACGTGTAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E578318" ref_strand="+" ref_description="SGN-E578318 [LE12CC07]">
      <seq>tgccatcaacggctattacttttctcatttcttgaaaatcaattatccaagcagcatatgataaaaaaagtactggattctcccattttcatcgagagacaatgtcgtcttgcttcctggattcgcaacttcaagcatataccggtacgcattaagcactgtgcacctgtgcttatgtgttcccctaacattagacttagcaggatccatgcccttataaatattcaaatagattaccttataataacatatagtattaaataaatagtattaaataatattagtatttactgtgtactaatccaagtcctattaggattagtactccttaatcctagtcctattaggattagtactccttcctatatctcctatatatatctcccatgtattcccttattaggttaacacttcaatacaatcaatattccttcatggtatcaagagccagaaaacctagatctttttttctctagttttttttctctctttagggcaccgatcgttccctctcttctcttgggcggcggcagccatgacaaccgaggtggatcctctcgatccacttccttctggcgttaaactccttctcaggcatcttcatgccctgattcccaaaaaattatcagacataaattaccctacatggaaaattaccgttcttacagcccttgaggccaattaccttctcaaatacgttgatggaagcacagaaccggcgccggcagtcatcaccgccacagacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="+" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="64933" stop="66280"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65233" g_stop="65984" g_length="752"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="752" r_length="752" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="+" ref_id="SGN-E578318" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E578318" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65233" e_stop="65984"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCATCAACGGCTATTACTTTTCTCATTTCTTGAAAATCAATTATCCAAGCAGCATATGATAAAAAAAGTACTGGATTCTCCCATTTTCATCGAGAGACAATGTCGTCTTGCTTCCTGGATTCGCAACTTCAAGCATATACCGGTACGCATTAAGCACTGTGCACCTGTGCTTATGTGTTCCCCTAACATTAGACTTAGCAGGATCCATGCCCTTATAAATATTCAAATAGATTACCTTATAATAACATATAGTATTAAATAAATAGTATTAAATAATATTAGTATTTACTGTGTACTAATCCAAGTCCTATTAGGATTAGTACTCCTTAATCCTAGTCCTATTAGGATTAGTACTCCTTCCTATATCTCCTATATATATCTCCCATGTATTCCCTTATTAGGTTAACACTTCAATACAATCAATATTCCTTCATGGTATCAAGAGCCAGAAAACCTAGATCTTTTTTTCTCTAGTTTTTTTTCTCTCTTTAGGGCACCGATCGTTCCCTCTCTTCTCTTGGGCGGCGGCAGCCATGACAACCGAGGTGGATCCTCTCGATCCACTTCCTTCTGGCGTTAAACTCCTTCTCAGGCATCTTCATGCCCTGATTCCCAAAAAATTATCAGACATAAATTACCCTACATGGAAAATTACCGTTCTTACAGCCCTTGAGGCCAATTACCTTCTCAAATACGTTGATGGAAGCACAGAACCGGCGCCGGCAGTCATCACCGCCACAGACAAATCAG</genome_strand>
        <mrna_strand>TGCCATCAACGGCTATTACTTTTCTCATTTCTTGAAAATCAATTATCCAAGCAGCATATGATAAAAAAAGTACTGGATTCTCCCATTTTCATCGAGAGACAATGTCGTCTTGCTTCCTGGATTCGCAACTTCAAGCATATACCGGTACGCATTAAGCACTGTGCACCTGTGCTTATGTGTTCCCCTAACATTAGACTTAGCAGGATCCATGCCCTTATAAATATTCAAATAGATTACCTTATAATAACATATAGTATTAAATAAATAGTATTAAATAATATTAGTATTTACTGTGTACTAATCCAAGTCCTATTAGGATTAGTACTCCTTAATCCTAGTCCTATTAGGATTAGTACTCCTTCCTATATCTCCTATATATATCTCCCATGTATTCCCTTATTAGGTTAACACTTCAATACAATCAATATTCCTTCATGGTATCAAGAGCCAGAAAACCTAGATCTTTTTTTCTCTAGTTTTTTTTCTCTCTTTAGGGCACCGATCGTTCCCTCTCTTCTCTTGGGCGGCGGCAGCCATGACAACCGAGGTGGATCCTCTCGATCCACTTCCTTCTGGCGTTAAACTCCTTCTCAGGCATCTTCATGCCCTGATTCCCAAAAAATTATCAGACATAAATTACCCTACATGGAAAATTACCGTTCTTACAGCCCTTGAGGCCAATTACCTTCTCAAATACGTTGATGGAAGCACAGAACCGGCGCCGGCAGTCATCACCGCCACAGACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E367110" ref_strand="+" ref_description="SGN-E367110 [cLPT-5-O20]">
      <seq>tcatccacaatacacacgcaaccaccacccacacgcacaagcaacccgaaccaccccatacccacaacatctccaacccgatccgttttgggtccttaccggccacccccgaatcaccaccgcccgtgccaccccccaatactcatcccatgttaacccgtggcaaagccggtatctttaaacccaaaacctttcaggctaccatactaccaaatacaccccttcccgatagtgaaccaacaacctactctgttgcctcaaaaaatgcttattggcgtcatgctatggatgacgagtttaaggctttgactgatcaggaaacttgggttcttgtacctaagccccatgggcggcacccagtgggctgtaaatgggtgtacaaaattaaacacaatgcggatggcagtatttccaggtacaaggctcgtttggttgctaaaggctacaatcaggagtatggtcttgattactccgagacattcagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="+" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="67931" stop="68979"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68231" g_stop="68671" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="441" r_length="441" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="+" ref_id="SGN-E367110" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="0.907" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367110" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68231" e_stop="68671"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACCCACAATACACCCGCAACCACCACCCACACTCACAACCAACCCGAACCACCCCATACCCACAACATCTCCAGCCCGATCCGTTTTGGGTCCTTCCCGGCCACCCCCGAATCATCACCGCCCGTGCCACCCCCCAATACTCATCCCATGTTACCTCATGGAAAAGCCGGTATCTTTAAACCCAAAACCTTTCAGGCTACCATACTACCAAATACACCCCTTCCCGATAGTGAACCAACAACCTACTCTGTTGCCTCAAAAAATGCTTATTGGCGTCATGCTATGGATGACGAGTTTAAGGCTTTGACTGATCAGAAAACTTGGGTTCTTGTACCTAAGCCCTATGGGCGGCACCCAGTGGGTTGTAAATGGGTGTACAAAATTAAACACAATGCAAATGACAGTATTTCCAAGTACAAGGCTCGTTTGGTTGCTAAAG</genome_strand>
        <mrna_strand>TCATCCACAATACACACGCAACCACCACCCACACGCACAAGCAACCCGAACCACCCCATACCCACAACATCTCCAACCCGATCCGTTTTGGGTCCTTACCGGCCACCCCCGAATCACCACCGCCCGTGCCACCCCCCAATACTCATCCCATGTTAACCCGTGGCAAAGCCGGTATCTTTAAACCCAAAACCTTTCAGGCTACCATACTACCAAATACACCCCTTCCCGATAGTGAACCAACAACCTACTCTGTTGCCTCAAAAAATGCTTATTGGCGTCATGCTATGGATGACGAGTTTAAGGCTTTGACTGATCAGGAAACTTGGGTTCTTGTACCTAAGCCCCATGGGCGGCACCCAGTGGGCTGTAAATGGGTGTACAAAATTAAACACAATGCGGATGGCAGTATTTCCAGGTACAAGGCTCGTTTGGTTGCTAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E331792" ref_strand="+" ref_description="SGN-E331792 [cTOD-7-A22]">
      <seq>tttgaacgtgaatcacagtgcaaccctaattgaataatcatgcgtccatcttatgacttctctttcagtcgggctagatccggcatgcttaccgtctatgctcgtcgtcgtccatggagagagctattgacccatccgtcttcctataccctacctatttccgtcagcgatttcgcatctcgggtgaagcgaaatctgagctactttcgggtcaactatgcgatgattgtactggttgtactcttcttaagcattttatggcatccaatttcaatgattgtgttcttaatcgtgtcggtaggttggtatttcctctacttccatcgcgacgaaccgttgatggtttttaatcgtacgattgatgatagaattgttctggttgttctcggagttgttacagtggtgagcttggtgctcactcatgtttggttgaatgtgttggtgtcgattgtcgtagggattgtgttgatatttttgcatgcaacttttagaattacagagaatttgtttctggaagaagaagatgccgctgatggtggattgcactcttttgttggtacctatgtgtgattttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="87210" stop="86036"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86910" g_stop="86336" g_length="575"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="575" r_length="575" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E331792" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331792" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86910" e_stop="86336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAACGTGAATCACAGTGCAACCCTAATTGAATAATCATGCGTCCATCTTATGACTTCTCTTTCAGTCGGGCTAGATCCGGCATGCTTACCGTCTATGCTCGTCGTCGTCCATGGAGAGAGCTATTGACCCATCCGTCTTCCTATACCCTACCTATTTCCGTCAGCGATTTCGCATCTCGGGTGAAGCGAAATCTGAGCTACTTTCGGGTCAACTATGCGATGATTGTACTGGTTGTACTCTTCTTAAGCATTTTATGGCATCCAATTTCAATGATTGTGTTCTTAATCGTGTCGGTAGGTTGGTATTTCCTCTACTTCCATCGCGACGAACCGTTGATGGTTTTTAATCGTACGATTGATGATAGAATTGTTCTGGTTGTTCTCGGAGTTGTTACAGTGGTGAGCTTGGTGCTCACTCATGTTTGGTTGAATGTGTTGGTGTCGATTGTCGTAGGGATTGTGTTGATATTTTTGCATGCAACTTTTAGAATTACAGAGAATTTGTTTCTGGAAGAAGAAGATGCCGCTGATGGTGGATTGCACTCTTTTGTTGGTACCTATGTGTGATTTTG</genome_strand>
        <mrna_strand>TTTGAACGTGAATCACAGTGCAACCCTAATTGAATAATCATGCGTCCATCTTATGACTTCTCTTTCAGTCGGGCTAGATCCGGCATGCTTACCGTCTATGCTCGTCGTCGTCCATGGAGAGAGCTATTGACCCATCCGTCTTCCTATACCCTACCTATTTCCGTCAGCGATTTCGCATCTCGGGTGAAGCGAAATCTGAGCTACTTTCGGGTCAACTATGCGATGATTGTACTGGTTGTACTCTTCTTAAGCATTTTATGGCATCCAATTTCAATGATTGTGTTCTTAATCGTGTCGGTAGGTTGGTATTTCCTCTACTTCCATCGCGACGAACCGTTGATGGTTTTTAATCGTACGATTGATGATAGAATTGTTCTGGTTGTTCTCGGAGTTGTTACAGTGGTGAGCTTGGTGCTCACTCATGTTTGGTTGAATGTGTTGGTGTCGATTGTCGTAGGGATTGTGTTGATATTTTTGCATGCAACTTTTAGAATTACAGAGAATTTGTTTCTGGAAGAAGAAGATGCCGCTGATGGTGGATTGCACTCTTTTGTTGGTACCTATGTGTGATTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E554206" ref_strand="+" ref_description="SGN-E554206 [cTSC-3-I9]">
      <seq>gtctagtggagtagtagtagtaaataacaacctcttctctctctttctttctttgtcagagagttgaagaaaattgttgattaatatttaatactactaccactgattctctgtttctctttctaatggagtagtagtagcaataaaatgcaaaagtgtattgaaaaaaaataaagataacagctgtttttttttttttgaacatgtcaaaaattatctttggctgaacaaagtcttctctttcacacctcccaaacccctcttctctctgtctatcaagtatcaactacagccctatagagattgaagaatctagggttttgtgtcttgtttgttttctttctttgctcaatgttatagctctgcttcctgtcttgtttgttgtttgattgattaaatcaccttcaggtcatgttttgttttttctggttgattttacctttcttcagttgaatttctcgataccccttttgtttctttgtgttgtatcaatgggttgttggtatctaggctctaccatttttatctgtttgttgtatctttttgtttttaaaatatgggaggagattgaggaagctaacaaagttgcagttgagagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="+" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="98295" stop="99491"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98595" g_stop="99191" g_length="597"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="599" r_length="599" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="+" ref_id="SGN-E554206" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E554206" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98595" e_stop="99191"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTAGTGGAGTAGTAGTAGTAAATAACAACCTCTTCTCTCTCTTTCTTTCTTTGTCAGAGAGTTGAAGAAAATTGTTGATTAATATTTAATACTACTACCACTGATTCTCTGTTTCTCTTTCTAATGGAGTAGTAGTAGCAATAAAATGCAAAAGTGTATTGAAAAAAAATAAAGATAACAGCT-TTTTTTTTTTTTTGAACATGTCAAAAATTATCTTTGGCTGAACAAAGTCTTCTCTTTCACACCTCCCAAACCCCTCTTCTCTCTGTCTATCAAGTATCAACTACAGCCCTATAGAGATTGAAGAATCTAGGGTTTTGTGTCTTGTTTGTTTTCTTTCTTTGCTCAATGTTATAGCTCTGCTTCCTGTCTTGTTTGTTGTTTGATTGATTAAATCACCTTCAGGTCATGTTTTGTTTTTTCTGGTTGATTTTACCTTTCTTCAGTTGAATTTCTCGATACCCCTTTTGTTTCTTTGTGTTGTATCAATTGGTTGTTGGTATCTAGGCTCTACCATTTTTATCTGTTTGTTGTATCTTTTTGTTTTTAAAATAT-GGAGGAGATTGAGGAAGCTAACAGAGTTGCAGTTGAGAGT</genome_strand>
        <mrna_strand>GTCTAGTGGAGTAGTAGTAGTAAATAACAACCTCTTCTCTCTCTTTCTTTCTTTGTCAGAGAGTTGAAGAAAATTGTTGATTAATATTTAATACTACTACCACTGATTCTCTGTTTCTCTTTCTAATGGAGTAGTAGTAGCAATAAAATGCAAAAGTGTATTGAAAAAAAATAAAGATAACAGCTGTTTTTTTTTTTTTGAACATGTCAAAAATTATCTTTGGCTGAACAAAGTCTTCTCTTTCACACCTCCCAAACCCCTCTTCTCTCTGTCTATCAAGTATCAACTACAGCCCTATAGAGATTGAAGAATCTAGGGTTTTGTGTCTTGTTTGTTTTCTTTCTTTGCTCAATGTTATAGCTCTGCTTCCTGTCTTGTTTGTTGTTTGATTGATTAAATCACCTTCAGGTCATGTTTTGTTTTTTCTGGTTGATTTTACCTTTCTTCAGTTGAATTTCTCGATACCCCTTTTGTTTCTTTGTGTTGTATCAATGGGTTGTTGGTATCTAGGCTCTACCATTTTTATCTGTTTGTTGTATCTTTTTGTTTTTAAAATATGGGAGGAGATTGAGGAAGCTAACAAAGTTGCAGTTGAGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E316512" ref_strand="+" ref_description="SGN-E316512 [cTOA-25-A18]">
      <seq>tcttctctctgtctatcaagtatcaactacagccctatagagattgaagaatctagggttttgtgtcttgtttgttttctttctttgctcaatgttatagctctgcttcctgtcttgtttgttgtttgattgattaaatcaccttcaggtcatgttttgttttttctggttgattttacctttcttcagttgaatttctcgataccccttttgtttctttgtgttgtatcaattggttgttggtatctaggctctaccatttttatctgtttgttgtatctttttgtttttaaaatatggaggagattgaggaagctaacagagttgcagttgagagttgtcatagagttattagtaagttatctcaacctcatgatgagaaaattttagcaagagagactggagaggctgttcacaagtttaagaaagtggtgactctcttaaattctaatttgggtcatgcaagagtaagaaaaaccaagaaaattctgaccccttttccccatagcctcttgttagagaattcaagttgtaaaattgttgatgatcagcttaaacccttacaactgcttcctatcacctatcctgaaaatatcagactagaaattggttctaatgtgaataggattcacccttcattggagttaaattcacatagtaaaaatcctcttcagttagcccaacaaacaagctatcactttgcccaacagcagcagcaacagaggcggtatcagcttcagcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="+" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="98554" stop="99896"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98854" g_stop="99596" g_length="743"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="743" r_length="743" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="+" ref_id="SGN-E316512" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316512" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98854" e_stop="99596"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTCTCTGTCTATCAAGTATCAACTACAGCCCTATAGAGATTGAAGAATCTAGGGTTTTGTGTCTTGTTTGTTTTCTTTCTTTGCTCAATGTTATAGCTCTGCTTCCTGTCTTGTTTGTTGTTTGATTGATTAAATCACCTTCAGGTCATGTTTTGTTTTTTCTGGTTGATTTTACCTTTCTTCAGTTGAATTTCTCGATACCCCTTTTGTTTCTTTGTGTTGTATCAATTGGTTGTTGGTATCTAGGCTCTACCATTTTTATCTGTTTGTTGTATCTTTTTGTTTTTAAAATATGGAGGAGATTGAGGAAGCTAACAGAGTTGCAGTTGAGAGTTGTCATAGAGTTATTAGTAAGTTATCTCAACCTCATGATGAGAAAATTTTAGCAAGAGAGACTGGAGAGGCTGTTCACAAGTTTAAGAAAGTGGTGACTCTCTTAAATTCTAATTTGGGTCATGCAAGAGTAAGAAAAACCAAGAAAATTCTGACCCCTTTTCCCCATAGCCTCTTGTTAGAGAATTCAAGTTGTAAAATTGTTGATGATCAGCTTAAACCCTTACAACTGCTTCCTATCACCTATCCTGAAAATATCAGACTAGAAATTGGTTCTAATGTGAATAGGATTCACCCTTCATTGGAGTTAAATTCACATAGTAAAAATCCTCTTCAGTTAGCCCAACAAACAAGCTATCACTTTGCCCAACAGCAGCAGCAACAGAGGCGGTATCAGCTTCAGCAG</genome_strand>
        <mrna_strand>TCTTCTCTCTGTCTATCAAGTATCAACTACAGCCCTATAGAGATTGAAGAATCTAGGGTTTTGTGTCTTGTTTGTTTTCTTTCTTTGCTCAATGTTATAGCTCTGCTTCCTGTCTTGTTTGTTGTTTGATTGATTAAATCACCTTCAGGTCATGTTTTGTTTTTTCTGGTTGATTTTACCTTTCTTCAGTTGAATTTCTCGATACCCCTTTTGTTTCTTTGTGTTGTATCAATTGGTTGTTGGTATCTAGGCTCTACCATTTTTATCTGTTTGTTGTATCTTTTTGTTTTTAAAATATGGAGGAGATTGAGGAAGCTAACAGAGTTGCAGTTGAGAGTTGTCATAGAGTTATTAGTAAGTTATCTCAACCTCATGATGAGAAAATTTTAGCAAGAGAGACTGGAGAGGCTGTTCACAAGTTTAAGAAAGTGGTGACTCTCTTAAATTCTAATTTGGGTCATGCAAGAGTAAGAAAAACCAAGAAAATTCTGACCCCTTTTCCCCATAGCCTCTTGTTAGAGAATTCAAGTTGTAAAATTGTTGATGATCAGCTTAAACCCTTACAACTGCTTCCTATCACCTATCCTGAAAATATCAGACTAGAAATTGGTTCTAATGTGAATAGGATTCACCCTTCATTGGAGTTAAATTCACATAGTAAAAATCCTCTTCAGTTAGCCCAACAAACAAGCTATCACTTTGCCCAACAGCAGCAGCAACAGAGGCGGTATCAGCTTCAGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E726450" ref_strand="+" ref_description="SGN-E726450 [LA11DD06]">
      <seq>attaaatcaccttcaggtcatgttttgttttttctggttgattttacctttcttcagttgaatttctcgataccccttttgtttctttgtgttgtatcaattggttgttggtatctaggctctaccatttttatctgtttgttgtatctttttgtttttaaaatatggaggagattgaggaagctaacagagttgcagttgagagttgtcatagagttattagtaagttatctcaacctcatgatgagaaaattttagcaagagagactggagaggctgttcacaagtttaagaaagtggtgactctcttaaattctaatttgggtcatgcaagagtaagaaaaaccaagaaaattctgaccccttttccccatagcctcttgttagagaattcaagttgtaaaattgttgatgatcagcttaaacccttacaactgcttcctatcacctatcctgaaaatatcagactagaaattggttctaatgtgaatagtattcacccttcattggagttaaattcacatagtaaaaatcctcttcagttagcccaacaaacaagctatcactttgcccaacagcagcagcaacagaggcggtatcagcttcagcagcaggcggatatgatgtatcggcgtagtaatagtgggattagtttaaactttgatagctctacatgtactccaactatgtcatcaacgaggtcgtttatctcctcgttgagtattgatggaagtgtagctaacttggatggtaatgccttccattttatcggggcttcgcgctccgcggatcagagctcagttcaacataagaaaaggtgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="+" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="98686" stop="100108"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98986" g_stop="99808" g_length="823"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="823" r_length="823" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="+" ref_id="SGN-E726450" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>823</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726450" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98986" e_stop="99808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAAATCACCTTCAGGTCATGTTTTGTTTTTTCTGGTTGATTTTACCTTTCTTCAGTTGAATTTCTCGATACCCCTTTTGTTTCTTTGTGTTGTATCAATTGGTTGTTGGTATCTAGGCTCTACCATTTTTATCTGTTTGTTGTATCTTTTTGTTTTTAAAATATGGAGGAGATTGAGGAAGCTAACAGAGTTGCAGTTGAGAGTTGTCATAGAGTTATTAGTAAGTTATCTCAACCTCATGATGAGAAAATTTTAGCAAGAGAGACTGGAGAGGCTGTTCACAAGTTTAAGAAAGTGGTGACTCTCTTAAATTCTAATTTGGGTCATGCAAGAGTAAGAAAAACCAAGAAAATTCTGACCCCTTTTCCCCATAGCCTCTTGTTAGAGAATTCAAGTTGTAAAATTGTTGATGATCAGCTTAAACCCTTACAACTGCTTCCTATCACCTATCCTGAAAATATCAGACTAGAAATTGGTTCTAATGTGAATAGGATTCACCCTTCATTGGAGTTAAATTCACATAGTAAAAATCCTCTTCAGTTAGCCCAACAAACAAGCTATCACTTTGCCCAACAGCAGCAGCAACAGAGGCGGTATCAGCTTCAGCAGCAGGCGGATATGATGTATCGGCGTAGTAATAGTGGGATTAGTTTAAACTTTGATAGCTCTACATGTACTCCAACTATGTCATCAACGAGGTCGTTTATCTCCTCGTTGAGTATTGATGGAAGTGTAGCTAACTTGGATGGTAATGCCTTCCATTTTATCGGGGCTTCGCGCTCCGCGGATCAGAGCTCAGTTCAACATAAGAAAAGGTGCTC</genome_strand>
        <mrna_strand>ATTAAATCACCTTCAGGTCATGTTTTGTTTTTTCTGGTTGATTTTACCTTTCTTCAGTTGAATTTCTCGATACCCCTTTTGTTTCTTTGTGTTGTATCAATTGGTTGTTGGTATCTAGGCTCTACCATTTTTATCTGTTTGTTGTATCTTTTTGTTTTTAAAATATGGAGGAGATTGAGGAAGCTAACAGAGTTGCAGTTGAGAGTTGTCATAGAGTTATTAGTAAGTTATCTCAACCTCATGATGAGAAAATTTTAGCAAGAGAGACTGGAGAGGCTGTTCACAAGTTTAAGAAAGTGGTGACTCTCTTAAATTCTAATTTGGGTCATGCAAGAGTAAGAAAAACCAAGAAAATTCTGACCCCTTTTCCCCATAGCCTCTTGTTAGAGAATTCAAGTTGTAAAATTGTTGATGATCAGCTTAAACCCTTACAACTGCTTCCTATCACCTATCCTGAAAATATCAGACTAGAAATTGGTTCTAATGTGAATAGTATTCACCCTTCATTGGAGTTAAATTCACATAGTAAAAATCCTCTTCAGTTAGCCCAACAAACAAGCTATCACTTTGCCCAACAGCAGCAGCAACAGAGGCGGTATCAGCTTCAGCAGCAGGCGGATATGATGTATCGGCGTAGTAATAGTGGGATTAGTTTAAACTTTGATAGCTCTACATGTACTCCAACTATGTCATCAACGAGGTCGTTTATCTCCTCGTTGAGTATTGATGGAAGTGTAGCTAACTTGGATGGTAATGCCTTCCATTTTATCGGGGCTTCGCGCTCCGCGGATCAGAGCTCAGTTCAACATAAGAAAAGGTGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E226134" ref_strand="+" ref_description="SGN-E226134 [cLEL-31-G23](-)">
      <seq>gatcaaaggttctccgcaccctaggggatactacaagtgtagcagcatgagaggctgtcctgccagaaagcacgttgagagatgcttggaagagccatcaatgcttattgtcacttacgaaggagaacatacccatcctaggttgccatcccaatcggcaaatgcatgagatctttagagaaatgcgaccaaagatcatcatcatcataagcctcgagaaatttcgaatactctattttaaaccggcttcaattgttcctgtacatattttgctttgaagtgcaatgcacatggggccaaatactagttcaaaaattggaagggtatatggaaaggcaaatgtaaagccaggttaatgatgcagtgagactttaaaggtttcctaaaaaaaaaaaaaaaaaactcgagacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="+" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="99762" stop="118533"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100062" g_stop="100085" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100086" i_stop="100475" i_length="390">
            <donor d_prob="0.753" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100476" g_stop="100858" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="407" r_length="383" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100859" i_stop="100997" i_length="139">
            <donor d_prob="0.464" d_score="0.70"/>
            <acceptor a_prob="0.104" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100998" g_stop="101002" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="412" r_length="5" r_score="0.800"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="+" ref_id="SGN-E226134" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E226134" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100062" e_stop="100085"/>
          <exon e_start="100476" e_stop="100858"/>
          <exon e_start="100998" e_stop="101002"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCAAAGGTTCTCCGCACCCTAGGTATAATGCAGCGGTATTAACTGCAAATTTGCTGTGGTTGCTTCTTAGTGTATGTACTACACGTCTTGTTGTTTTTGATGTTTGTTTCAGCTGCTTTTTTTGTCTTCTCATGTTTCCCACTTTGTTTCGCTGGAACGTGTCTTGTTTATCTTACTTGGCTGGTGGAGATAGCAAGTCCCTGGATAGTTAACAGATTGGATAATTTAACTGAATCGGCTTTGTTAACATCTTTGCTAACCGAAAGGGGATGTTGTAATGGTTCATTTGTTGATAAAAAATTGCTAGACTAGAGAATGTGAACTGGCAGCTTTGTGTAGTCTTACCTTTCCGTGTAGTTTTTTTTAGTTCGTCGAGTACAGACTCAGCTAAATCTTTCCTTGGCTTGTGCAGGGGATACTACAAGTGTAGCAGCATGAGAGGCTGTCCTGCCAGGAAGCACGTTGAGAGATGCTTGGAAGAGCCATCAATGCTTATTGTCACTTACGAAGGAGAACATAACCATCCTAGGTTGCCATCCCAATCGGCAAATGCATGAGATCTTTAGAGAAATGCGAACAAAGATCATCATCATCATAAGCCTCGAGAAATTTCGAATACTCTATTTTAAACCGGCTTCAATTGTTCCTGTACATATTTTGCTTTGAAGTGCAATGCACATGGGGCCAAATACTAGTTCAAAAATTGGAAGGGTATATGGAAAGGCAAATGTAAAGCCAGGTTAATGATGCAGTGAGACTTTAAAGGTTTCCTAATTGTAAGATTATCCTCATAAAGTATGACTCCTTTTTTGAAAAAAAGTTTTAGGATTTGCTTATTTAACAATCATACTACTTAGGATGCTTGGACGGTACCAACAAGGTAAAAGTTTACATAACCAATCAACTGAGCTAAACGTCTGCCCCTAAAACGTAGGAGTA</genome_strand>
        <mrna_strand>GATCAAAGGTTCTCCGCACCCTAG......................................................................................................................................................................................................................................................................................................................................................................................................GGGATACTACAAGTGTAGCAGCATGAGAGGCTGTCCTGCCAGAAAGCACGTTGAGAGATGCTTGGAAGAGCCATCAATGCTTATTGTCACTTACGAAGGAGAACATACCCATCCTAGGTTGCCATCCCAATCGGCAAATGCATGAGATCTTTAGAGAAATGCGACCAAAGATCATCATCATCATAAGCCTCGAGAAATTTCGAATACTCTATTTTAAACCGGCTTCAATTGTTCCTGTACATATTTTGCTTTGAAGTGCAATGCACATGGGGCCAAATACTAGTTCAAAAATTGGAAGGGTATATGGAAAGGCAAATGTAAAGCCAGGTTAATGATGCAGTGAGACTTTAAAGGTTTCCTAAAAAAAAAAAAAAAAAACTCGA...........................................................................................................................................GACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E746734" ref_strand="+" ref_description="SGN-E746734 [GI|25140463]">
      <seq>gatcaaaggttctccgcaccctaggggatactacaagtgtagcagcatgagaggctgtcctgccaggaagcacgttgagagatgcttggaagagccatcaatgcttattgtcacttacgaaggagaacataaccatcctaggttgccatcccaatcggcaaatgcatgagatctttagagaaatgcgaacaaagatcatcatcatcataagcctcgagaaatttcgaatactctattttaaaccggcttcaattgttcctgtacatattttgctttgaagtgcaatgcacatggggccaaatactagttcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="+" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="99762" stop="118528"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100062" g_stop="100085" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100086" i_stop="100475" i_length="390">
            <donor d_prob="0.753" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100476" g_stop="100780" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="329" r_length="305" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="+" ref_id="SGN-E746734" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>329</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746734" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100062" e_stop="100085"/>
          <exon e_start="100476" e_stop="100780"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCAAAGGTTCTCCGCACCCTAGGTATAATGCAGCGGTATTAACTGCAAATTTGCTGTGGTTGCTTCTTAGTGTATGTACTACACGTCTTGTTGTTTTTGATGTTTGTTTCAGCTGCTTTTTTTGTCTTCTCATGTTTCCCACTTTGTTTCGCTGGAACGTGTCTTGTTTATCTTACTTGGCTGGTGGAGATAGCAAGTCCCTGGATAGTTAACAGATTGGATAATTTAACTGAATCGGCTTTGTTAACATCTTTGCTAACCGAAAGGGGATGTTGTAATGGTTCATTTGTTGATAAAAAATTGCTAGACTAGAGAATGTGAACTGGCAGCTTTGTGTAGTCTTACCTTTCCGTGTAGTTTTTTTTAGTTCGTCGAGTACAGACTCAGCTAAATCTTTCCTTGGCTTGTGCAGGGGATACTACAAGTGTAGCAGCATGAGAGGCTGTCCTGCCAGGAAGCACGTTGAGAGATGCTTGGAAGAGCCATCAATGCTTATTGTCACTTACGAAGGAGAACATAACCATCCTAGGTTGCCATCCCAATCGGCAAATGCATGAGATCTTTAGAGAAATGCGAACAAAGATCATCATCATCATAAGCCTCGAGAAATTTCGAATACTCTATTTTAAACCGGCTTCAATTGTTCCTGTACATATTTTGCTTTGAAGTGCAATGCACATGGGGCCAAATACTAGTTCAAAAATTGGAAGGGTATAT</genome_strand>
        <mrna_strand>GATCAAAGGTTCTCCGCACCCTAG......................................................................................................................................................................................................................................................................................................................................................................................................GGGATACTACAAGTGTAGCAGCATGAGAGGCTGTCCTGCCAGGAAGCACGTTGAGAGATGCTTGGAAGAGCCATCAATGCTTATTGTCACTTACGAAGGAGAACATAACCATCCTAGGTTGCCATCCCAATCGGCAAATGCATGAGATCTTTAGAGAAATGCGAACAAAGATCATCATCATCATAAGCCTCGAGAAATTTCGAATACTCTATTTTAAACCGGCTTCAATTGTTCCTGTACATATTTTGCTTTGAAGTGCAATGCACATGGGGCCAAATACTAGTTCAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E226038" ref_strand="+" ref_description="SGN-E226038 [cLEL-31-G23](-)">
      <seq>agcacgttgagagatgcttggaagagccatcaatgcttattgtcacttccgaaggagaacataaaccatcctaggttgccatcccaatcggcaaatgcatgagatctttagagaaatgcgaacaaagatcatcatcatcataagcctcgagaaatttcgaatactctattttaaaccggcttcaattgttcctgtacatattttgctttgaagtgcaatgcacatggggccaaatactagttcaaaaattggaagggtatatggaaaggcaaatgtaaagccaggttaatgatgcagtgagactttaaaggtttcctaaaaaaaaaaaaaaaaaactcgagacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="+" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="100220" stop="118533"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100520" g_stop="100858" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="340" r_length="340" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100859" i_stop="100997" i_length="139">
            <donor d_prob="0.464" d_score="0.70"/>
            <acceptor a_prob="0.104" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100998" g_stop="101002" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="345" r_length="5" r_score="0.800"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="+" ref_id="SGN-E226038" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>344</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E226038" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100520" e_stop="100858"/>
          <exon e_start="100998" e_stop="101002"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCACGTTGAGAGATGCTTGGAAGAGCCATCAATGCTTATTGTCACTTACGAAGGAGAACAT-AACCATCCTAGGTTGCCATCCCAATCGGCAAATGCATGAGATCTTTAGAGAAATGCGAACAAAGATCATCATCATCATAAGCCTCGAGAAATTTCGAATACTCTATTTTAAACCGGCTTCAATTGTTCCTGTACATATTTTGCTTTGAAGTGCAATGCACATGGGGCCAAATACTAGTTCAAAAATTGGAAGGGTATATGGAAAGGCAAATGTAAAGCCAGGTTAATGATGCAGTGAGACTTTAAAGGTTTCCTAATTGTAAGATTATCCTCATAAAGTATGACTCCTTTTTTGAAAAAAAGTTTTAGGATTTGCTTATTTAACAATCATACTACTTAGGATGCTTGGACGGTACCAACAAGGTAAAAGTTTACATAACCAATCAACTGAGCTAAACGTCTGCCCCTAAAACGTAGGAGTA</genome_strand>
        <mrna_strand>AGCACGTTGAGAGATGCTTGGAAGAGCCATCAATGCTTATTGTCACTTCCGAAGGAGAACATAAACCATCCTAGGTTGCCATCCCAATCGGCAAATGCATGAGATCTTTAGAGAAATGCGAACAAAGATCATCATCATCATAAGCCTCGAGAAATTTCGAATACTCTATTTTAAACCGGCTTCAATTGTTCCTGTACATATTTTGCTTTGAAGTGCAATGCACATGGGGCCAAATACTAGTTCAAAAATTGGAAGGGTATATGGAAAGGCAAATGTAAAGCCAGGTTAATGATGCAGTGAGACTTTAAAGGTTTCCTAAAAAAAAAAAAAAAAAACTCGA...........................................................................................................................................GACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E538071" ref_strand="+" ref_description="SGN-E538071 [TUS-56-P24]">
      <seq>attataattgcagacttaaaggagtataaaatcactaagatttttgtctccaccaaaaatacagatttaaataatttccttaagattgttgccaatctgtgttaagaaaatcagaaattactggttgtgataaatcattcagaaacacgaagtaactgagatttttagaaccactaaataagatgaacataaatttatttgtaaaaataatttaatctgtaaaacttaccagaatcttgaatactctttttgataatttaggaaaaaaatcaagtccactgaattcacagtgtccccttaaggaaattattcccctgtagtatccgagggttgatttggaatataacctcccagggtaaaatgatcttaatcagtagagtatagataccaaaaactctactgtcagcgaatcaatccacaacaggaaagtacacgaagaaaaatgtgttttttaagaagtaggaagatcagaaaattcgttagtaaatattctgaagactgaatggtatttataggcaagaataatatattctgaaaggttgcaactctttcagaattgagacaaccattaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="103515" stop="102377"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103215" g_stop="102681" g_length="535"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="535" r_length="535" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E538071" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E538071" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103215" e_stop="102681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATAATTACAGACTTAAAGGAGTATAAAATCACAAAGACTTTTGTCTCCACTAGAAACACAGATTTATATAATTTCCTTAAGATTGTTGACAATCTGTGTAAAGAAAATAAAAAATTACTGGTTGTAATAAATCATTCAGATACACGAAGTAACTGAGATTTTTAGAACCAGTAAATAAGATGAACAGAATTTTATTTGT-AAAATAATTTCATCTGTAAAACTTACCAGAATCTGGAATACTCTTTTTGATAATTTAGAAAGAAAATCAAGTCCACTGAATTCACAGTGTCCCTTTAAGGAAATTATTCCCCTCTAGTATCCGAGGTTTGATTTGGAATATAACCTCCCAAGGTAAAATGATCTTAATCAGTAGAGTATAGATACCAAAAACTCTACTGTCAGCGAATCAATCCACAGCAGGAAAGTACACGAAGAAATATTTATTTTTTAAGAAGAAGGAAGATCAGAAAATTTCGTTAGTAAATATTCTGAAGACTGAATGGTATTTATAGGCAAGAATAATATATTCTGA</genome_strand>
        <mrna_strand>ATTATAATTGCAGACTTAAAGGAGTATAAAATCACTAAGATTTTTGTCTCCACCAAAAATACAGATTTAAATAATTTCCTTAAGATTGTTGCCAATCTGTGTTAAGAAAATCAGAAATTACTGGTTGTGATAAATCATTCAGAAACACGAAGTAACTGAGATTTTTAGAACCACTAAATAAGATGAACATAAATTTATTTGTAAAAATAATTTAATCTGTAAAACTTACCAGAATCTTGAATACTCTTTTTGATAATTTAGGAAAAAAATCAAGTCCACTGAATTCACAGTGTCCCCTTAAGGAAATTATTCCCCTGTAGTATCCGAGGGTTGATTTGGAATATAACCTCCCAGGGTAAAATGATCTTAATCAGTAGAGTATAGATACCAAAAACTCTACTGTCAGCGAATCAATCCACAACAGGAAAGTACACGAAGAAAAATGTGTTTTTTAAGAAGTAGGAAGATCAGAAAA-TTCGTTAGTAAATATTCTGAAGACTGAATGGTATTTATAGGCAAGAATAATATATTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268499" ref_strand="+" ref_description="SGN-E268499 [cLEI-13-K15]">
      <seq>ttataattgcagacttaaaggagtataaaatcactaagatttttgtctccaccaaaaatacagatttaaataatttccttaagattgttgccaatctgtgttaagaaaatcagaaattactggttgtgataaatcattcagaaacacgaagtaactgagatttttagaaccactaaataagatgaacataaatttatttgtaaaaataatttaatctgtaaaacttaccagaatcttgaatactctttttgataatttaggaaaaaaatcaagtccactgaattcacagtgtccccttaaggaaattattcccctgtagtatccgaggtttgatttggaatataacctcccagggtaaaatgatcttaatcagtagagtatagataccaaaaactctactgtcagcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="-" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="103514" stop="102509"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103214" g_stop="102809" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="407" r_length="407" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="-" ref_id="SGN-E268499" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268499" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103214" e_stop="102809"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATAATTACAGACTTAAAGGAGTATAAAATCACAAAGACTTTTGTCTCCACTAGAAACACAGATTTATATAATTTCCTTAAGATTGTTGACAATCTGTGTAAAGAAAATAAAAAATTACTGGTTGTAATAAATCATTCAGATACACGAAGTAACTGAGATTTTTAGAACCAGTAAATAAGATGAACAGAATTTTATTTGT-AAAATAATTTCATCTGTAAAACTTACCAGAATCTGGAATACTCTTTTTGATAATTTAGAAAGAAAATCAAGTCCACTGAATTCACAGTGTCCCTTTAAGGAAATTATTCCCCTCTAGTATCCGAGGTTTGATTTGGAATATAACCTCCCAAGGTAAAATGATCTTAATCAGTAGAGTATAGATACCAAAAACTCTACTGTCAGCG</genome_strand>
        <mrna_strand>TTATAATTGCAGACTTAAAGGAGTATAAAATCACTAAGATTTTTGTCTCCACCAAAAATACAGATTTAAATAATTTCCTTAAGATTGTTGCCAATCTGTGTTAAGAAAATCAGAAATTACTGGTTGTGATAAATCATTCAGAAACACGAAGTAACTGAGATTTTTAGAACCACTAAATAAGATGAACATAAATTTATTTGTAAAAATAATTTAATCTGTAAAACTTACCAGAATCTTGAATACTCTTTTTGATAATTTAGGAAAAAAATCAAGTCCACTGAATTCACAGTGTCCCCTTAAGGAAATTATTCCCCTGTAGTATCCGAGGTTTGATTTGGAATATAACCTCCCAGGGTAAAATGATCTTAATCAGTAGAGTATAGATACCAAAAACTCTACTGTCAGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242172" ref_strand="+" ref_description="SGN-E242172 [cLED-37-C23]">
      <seq>gatagtaaaactgttggatcacaagtgcaggaacttcaacttattctccatgatctgattgctgaagatatggtggtaaatgaagcttttcaagtggctgcaatgatcgagaagttgcctccttggtggaatgatttcaagaattatctaaagcacaagcgtaaagtaatgaagcttgaagatcttgtgattcatctcaagattgaggaagataacagaaatgccgaaaagaagtcgcgtaagagttcaacaatcattggagttaatattgttgaagaagctcttaccaaagacaaaaagtgaaagaagtccaacgggcagaagtcagaacaggccaagaagaaattcaaaggcaactcttataattgtggcaaggctggtcatagatcttctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="+" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="103361" stop="104355"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103661" g_stop="104055" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="395" r_length="395" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="+" ref_id="SGN-E242172" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242172" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103661" e_stop="104055"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAGTAAAACTGTTGGATCACAAGTGCAGGAACTTCAACTTATTCTCCATGATCTGATTGCTGAAGATATGGTAGTAAATGAAGTTTTTCAAATGGCTGTAATGATCGAGAAATTGCCTCCTTCGTGGAATGATTTCAAGAATTATCTAAAGCACAAGCGTAAAGAAATGAAGCTTGAAGATCTTGTGATTCGTCTCAAGATTGAGGAAGATAACAAAAATGTTGAAAAGAAGTCGCGTAAGAGTTCAACAATCATTGGAGTTAATATTGTTGAAGAAGCTCCTACCAAAGACAAAAAGAGAAAGAAGTCCAATGGGCAGAAGTCAGAACATGCCAAGAAGAAATTCAAAGGCAACTGTTATAATTGTGGCAAGGCTGGTCATAGATCTTCTGA</genome_strand>
        <mrna_strand>GATAGTAAAACTGTTGGATCACAAGTGCAGGAACTTCAACTTATTCTCCATGATCTGATTGCTGAAGATATGGTGGTAAATGAAGCTTTTCAAGTGGCTGCAATGATCGAGAAGTTGCCTCCTTGGTGGAATGATTTCAAGAATTATCTAAAGCACAAGCGTAAAGTAATGAAGCTTGAAGATCTTGTGATTCATCTCAAGATTGAGGAAGATAACAGAAATGCCGAAAAGAAGTCGCGTAAGAGTTCAACAATCATTGGAGTTAATATTGTTGAAGAAGCTCTTACCAAAGACAAAAAGTGAAAGAAGTCCAACGGGCAGAAGTCAGAACAGGCCAAGAAGAAATTCAAAGGCAACTCTTATAATTGTGGCAAGGCTGGTCATAGATCTTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242208" ref_strand="+" ref_description="SGN-E242208 [cLED-37-E10]">
      <seq>gtaaaactgttggatcacaagtgcaggaacttcaacttattctccatgatctgattgctgaagatatggtggtaaatgaagcttttcaagtggctgcaatgatcgagaagttgcctccttggtggaatgatttcaagaattatctaaagcacaagcgtaaagtaatgaagcttgaagatcttgggattcatctcaagattgaggaagataacagaaatgccgaaaagaagtcccgtaagagttcaacaatcattggagttaatattgttgaagaagctcttaccaaagacaaaaagtgaaagaagtccaacgggcagaagtcagaacaggccaagaagaaattcaaaggcaactcttataatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="+" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="103365" stop="104327"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103665" g_stop="104027" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="363" r_length="363" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="+" ref_id="SGN-E242208" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>363</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242208" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103665" e_stop="104027"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAAACTGTTGGATCACAAGTGCAGGAACTTCAACTTATTCTCCATGATCTGATTGCTGAAGATATGGTAGTAAATGAAGTTTTTCAAATGGCTGTAATGATCGAGAAATTGCCTCCTTCGTGGAATGATTTCAAGAATTATCTAAAGCACAAGCGTAAAGAAATGAAGCTTGAAGATCTTGTGATTCGTCTCAAGATTGAGGAAGATAACAAAAATGTTGAAAAGAAGTCGCGTAAGAGTTCAACAATCATTGGAGTTAATATTGTTGAAGAAGCTCCTACCAAAGACAAAAAGAGAAAGAAGTCCAATGGGCAGAAGTCAGAACATGCCAAGAAGAAATTCAAAGGCAACTGTTATAATT</genome_strand>
        <mrna_strand>GTAAAACTGTTGGATCACAAGTGCAGGAACTTCAACTTATTCTCCATGATCTGATTGCTGAAGATATGGTGGTAAATGAAGCTTTTCAAGTGGCTGCAATGATCGAGAAGTTGCCTCCTTGGTGGAATGATTTCAAGAATTATCTAAAGCACAAGCGTAAAGTAATGAAGCTTGAAGATCTTGGGATTCATCTCAAGATTGAGGAAGATAACAGAAATGCCGAAAAGAAGTCCCGTAAGAGTTCAACAATCATTGGAGTTAATATTGTTGAAGAAGCTCTTACCAAAGACAAAAAGTGAAAGAAGTCCAACGGGCAGAAGTCAGAACAGGCCAAGAAGAAATTCAAAGGCAACTCTTATAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E551179" ref_strand="-" ref_description="SGN-E551179 [TUS-55-K22]">
      <seq>aaaagtaaataatttcaacacaaaaagtggcttaacaaagattaaacaattactgttgggtatgtagcaagaattgatgggaaatagagggaaggagaggaatttgaaaagtttagaacttgaaaggttgggaacttgaaaagtcctctaatgctttaataaaaaaggcaatagtccctcatcgttaatggaaatgaaaataagagagtttaaataaataaacactcctattaattattaaaagggttggaaagaggaacccccctcgcgccgtcgtggtcgtcgctcgctcgcttcggcttcggcttcggctttggcaaatgatcgatcgagagataattttaaaaattcccgccactgttctgaaaggttgcaactttcaggaacagtcaataccatttgaaagtttgcaacctttcattaatggttgtgtcaattctgaaagggttgcctttcagaatatattattcttgtttataaataccattcagtcttcagaatatttactaacgaattttctgatattcctacttattaataaacacattttttcttcgtgtactttcctgctgtggattgattcgctgacagtagagttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="+" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="101838" stop="108772"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107510" g_stop="107523" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="0.571"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107524" i_stop="107574" i_length="51">
            <donor d_prob="0.570" d_score="0.00"/>
            <acceptor a_prob="0.963" a_score="0.61"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107575" g_stop="107615" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="53" r_length="40" r_score="0.610"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107616" i_stop="107762" i_length="147">
            <donor d_prob="0.000" d_score="0.61"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107763" g_stop="108046" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="343" r_length="290" r_score="0.930"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108047" i_stop="108213" i_length="167">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108214" g_stop="108472" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="599" r_length="256" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="+" ref_id="SGN-E551179" ref_strand="-">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E551179" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="107510" e_stop="107523"/>
          <exon e_start="107575" e_stop="107615"/>
          <exon e_start="107763" e_stop="108046"/>
          <exon e_start="108214" e_stop="108472"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACGAATACAACCGTAAGAATCATAAACAGTAAAGGGTTAATTGTGTGACATATGGTTGTCTAGGTATACACCAAAGTTCGACGGTTCAAAGATATAACATCTACCGATTGACCGAGTATATCCGACATATGTTCACTACGGAAAGTCCAAGGGGAAACCTACTTATCCAAATGCAATTAATCATTGCTTGTAAAGTACACAATTGTCCGTGCATTTCTATGTTATAACTATTCCCCATCAATGTGGGGGATTGTTGGGTATGTAGCAAGAATTGATTGGAAATAGAGGGAAGGCGATGAATTTGAAAAGTTTAGAACTTGAAAGGTTGGGAACTTGAAAAGTCCTCTAATGCTTTAATAAAAAAGGCAATAGTCCCTCATCGGTAATGGAAATGAAAATAGGAGAGTTTAAATAAATAAACACTCCTATTAATTATTAAAAGGGTTGGAAAGAGGGACCCCCCT--CG-CGTCGTCGTCGTCG-TCGCTCGC-TC-GCTTCGGCTTCGGCTTTGGCAAATGATCGATCAAGAGATAATTTTTTGGATAAAATTTATTTTAATTATTTATTTAATTAATTAAATGGCCAAAAAATATTTTCAATTAATTAGTTGATAACAGAAATTAACCAAAATGTTTTCAACTTTTTAGTTAACCCGACCCGATTCGGATCCGTGTGCGTGACCCGTTTTAAATATGTTATATTTAAAAAAATTCCCGCCACTGTTCTGAAAGGTTGCAACTTTCAGGAACAGTCAATACCATTTGAAAGTTTGCAACCTTTCATTAATGGTCGTGTCAATTCTGAAAGGGTTGCAACCTTTCAGAATATATTATTCTTGCCTATAAATATCATTCAGTCTTCAGAATATTTACTAATGAAATTTTCTGATCTTCCTTCTTCTTAAAAAACA-AATATTTCTTCGTGTACTTTCCTGCTGTGGATTGATTCGCTGACAGTAGAGTTT</genome_strand>
        <mrna_strand>AAAAGTAAATAAT-...................................................TTCAACACAAAAAGT-GGCTTAACAAAGATTAAACAATTAC...................................................................................................................................................TGTTGGGTATGTAGCAAGAATTGATGGGAAATAGAGGGAAGGAGAGGAATTTGAAAAGTTTAGAACTTGAAAGGTTGGGAACTTGAAAAGTCCTCTAATGCTTTAATAAAAAAGGCAATAGTCCCTCATCGTTAATGGAAATGAAAATAAGAGAGTTTAAATAAATAAACACTCCTATTAATTATTAAAAGGGTTGGAAAGAGGAACCCCCCTCGCGCCGTCGTGGTCGTCGCTCGCTCGCTTCGGCTTCGGCTTCGGCTTTGGCAAATGATCGATCGAGAGATAATTTT.......................................................................................................................................................................AAAAATTCCCGCCACTGTTCTGAAAGGTTGCAACTTTCAGGAACAGTCAATACCATTTGAAAGTTTGCAACCTTTCATTAATGGTTGTGTCAATTCTGAAAGGGTTG---CCTTTCAGAATATATTATTCTTGTTTATAAATACCATTCAGTCTTCAGAATATTTACTAACG-AATTTTCTGATATTCCTACTTATTAATAAACACATTTTTTCTTCGTGTACTTTCCTGCTGTGGATTGATTCGCTGACAGTAGAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E689001" ref_strand="-" ref_description="SGN-E689001 [t3_tus_55_K22]">
      <seq>aaaagtaaataatttcaacacaaaaagtgacttaacaaagattaaacaattactgttgggtatgtagcaagaattgatgggaaatagagggaaggagaggaatttgaaaagtttagaacttgaaaggttgggaacttgaaaagtcctctaatgctttaataaaaaaggcaatagtccctcatcgttaatggaaatgaaaataagagagtttaaataaataaacactcctattaattattaaaagggttggaaagaggaacccccctcgcgccgtcgtggtcgtcgctcgctcgcttcggcttcggcttcggctttggcaaatgatcgatcgagagataattttaaaaattcccgccactgttctgaaaggttgcaactttcaggaacagtcaataccatttgaaagtttgcaacctttcattaatggttgtgtcaattctgaaagggttgcctttcagaatatattattcttgtttataaataccattcagtcttcagaatatttactaacgaattttctgatattcctacttattaataaacacattttttcttcgtgtactttcctgctgtggattgattcgctgacagtagagttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0076N09-EOVuN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0076N09.1" temp_strand="+" temp_description="C09SLe0076N09.1  AC225329.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0076N09 upload_account_name:spain (1 - 139368)">
        <position start="101838" stop="108772"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107510" g_stop="107523" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="0.571"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107524" i_stop="107574" i_length="51">
            <donor d_prob="0.570" d_score="0.00"/>
            <acceptor a_prob="0.963" a_score="0.63"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107575" g_stop="107615" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="53" r_length="40" r_score="0.634"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107616" i_stop="107762" i_length="147">
            <donor d_prob="0.000" d_score="0.63"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107763" g_stop="108046" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="343" r_length="290" r_score="0.930"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108047" i_stop="108213" i_length="167">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108214" g_stop="108472" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="599" r_length="256" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0076N09.1" gen_strand="+" ref_id="SGN-E689001" ref_strand="-">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0076N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E689001" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="107510" e_stop="107523"/>
          <exon e_start="107575" e_stop="107615"/>
          <exon e_start="107763" e_stop="108046"/>
          <exon e_start="108214" e_stop="108472"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACGAATACAACCGTAAGAATCATAAACAGTAAAGGGTTAATTGTGTGACATATGGTTGTCTAGGTATACACCAAAGTTCGACGGTTCAAAGATATAACATCTACCGATTGACCGAGTATATCCGACATATGTTCACTACGGAAAGTCCAAGGGGAAACCTACTTATCCAAATGCAATTAATCATTGCTTGTAAAGTACACAATTGTCCGTGCATTTCTATGTTATAACTATTCCCCATCAATGTGGGGGATTGTTGGGTATGTAGCAAGAATTGATTGGAAATAGAGGGAAGGCGATGAATTTGAAAAGTTTAGAACTTGAAAGGTTGGGAACTTGAAAAGTCCTCTAATGCTTTAATAAAAAAGGCAATAGTCCCTCATCGGTAATGGAAATGAAAATAGGAGAGTTTAAATAAATAAACACTCCTATTAATTATTAAAAGGGTTGGAAAGAGGGACCCCCCT--CG-CGTCGTCGTCGTCG-TCGCTCGC-TC-GCTTCGGCTTCGGCTTTGGCAAATGATCGATCAAGAGATAATTTTTTGGATAAAATTTATTTTAATTATTTATTTAATTAATTAAATGGCCAAAAAATATTTTCAATTAATTAGTTGATAACAGAAATTAACCAAAATGTTTTCAACTTTTTAGTTAACCCGACCCGATTCGGATCCGTGTGCGTGACCCGTTTTAAATATGTTATATTTAAAAAAATTCCCGCCACTGTTCTGAAAGGTTGCAACTTTCAGGAACAGTCAATACCATTTGAAAGTTTGCAACCTTTCATTAATGGTCGTGTCAATTCTGAAAGGGTTGCAACCTTTCAGAATATATTATTCTTGCCTATAAATATCATTCAGTCTTCAGAATATTTACTAATGAAATTTTCTGATCTTCCTTCTTCTTAAAAAACA-AATATTTCTTCGTGTACTTTCCTGCTGTGGATTGATTCGCTGACAGTAGAGTTT</genome_strand>
        <mrna_strand>AAAAGTAAATAAT-...................................................TTCAACACAAAAAGT-GACTTAACAAAGATTAAACAATTAC...................................................................................................................................................TGTTGGGTATGTAGCAAGAATTGATGGGAAATAGAGGGAAGGAGAGGAATTTGAAAAGTTTAGAACTTGAAAGGTTGGGAACTTGAAAAGTCCTCTAATGCTTTAATAAAAAAGGCAATAGTCCCTCATCGTTAATGGAAATGAAAATAAGAGAGTTTAAATAAATAAACACTCCTATTAATTATTAAAAGGGTTGGAAAGAGGAACCCCCCTCGCGCCGTCGTGGTCGTCGCTCGCTCGCTTCGGCTTCGGCTTCGGCTTTGGCAAATGATCGATCGAGAGATAATTTT.......................................................................................................................................................................AAAAATTCCCGCCACTGTTCTGAAAGGTTGCAACTTTCAGGAACAGTCAATACCATTTGAAAGTTTGCAACCTTTCATTAATGGTTGTGTCAATTCTGAAAGGGTTG---CCTTTCAGAATATATTATTCTTGTTTATAAATACCATTCAGTCTTCAGAATATTTACTAACG-AATTTTCTGATATTCCTACTTATTAATAAACACATTTTTTCTTCGTGTACTTTCCTGCTGTGGATTGATTCGCTGACAGTAGAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>213</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="6418" PGL_stop="7565"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6418" e_stop="7565"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="6418" e_stop="7565" e_length="1148"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6418" stop="7208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213582" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6418" stop="7144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6418" stop="6915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200328" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6883" stop="7565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379020" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACTTTCTAAAACATTATGTTAAAACTAATAAAAAATAAGTTCACGTCTGAAAGGAGTTTAGATTGAAGGTTTTGGTACGAAATGTTAAATAGAGATGATATCTTCTACACGATAGAAAATATATTAATATAATTTTATAGATTCTGATTCGACACTAAACATATATATATATATATTAAGGTGGTTGTGAGGTAGACAACTGGGATTCGAAATTATTTAAAGTTGAGCATATTATTATTATTATTATTATCTCGAACAGATGCATAGATGAAGACTTCAAAAAGAAAAAATAATAAACAAAGACAAGTAACATCATCATATTTTTTTAAATAATGAATAAAGTAAGATGAGTCATCACTTATATATTTGTTTATTAATGGCATGGCCATATATATATATATATATTATATATCTTGTTTTGGCATTTCTAGACATACAGATCTTATTCACATGAGTCCACACCGTGTGAAAACTCTAATTCCAACAACAATTTTTTGAAATTCTATTGAATTTTTGTGAGTGGTAGCTTTAATTGGTAAAAATAATTAGTGCGATTATTTTTGACATTGTGAGCTTTTCAAGTCAAAGTCATAACTAAAATTTAGTATTGTCGTACGTATCTTAAAATATCAGATGAAATGATTATATTTTTTTAAAAATATAAAAATTTGAGTGACGTGAAAATTATGATCATATTTCAATATCATTTCAAATTATAGTCTTGAATTTCTATATAACTTTCACGTAAGGAACGTAATGAATGCATAGCTATATATATTATATTGAAAATGTGATTTTTTTAACAGTTTAGACTTTGAAACATAGAATGTATTTATCTGTTAGACAGATATCATGGAAAAGGGAGAAGATTTGTGCTTGAAAAAGGCATAGACATACCCTTAGTGAACAAAAGCATGTGATTTTTTGAAAGAACATTATTGTGTTCCTCCTTTTTTGGAGACATGAAGGAAAAAAGGTGTATGATTTAGAGACTATGATGGTTGTGGGGTACACCCTGATCTTCCTACACTTGATGAACATATTCGAGATATTTCTTCATCTAATCGAAAATTAAAGACGTCCCTCTTGTAACATAAAAATATGTGTTACTATGAAAATCTTGGTATGAAAAAAAAAAAAGGGTTAT</gDNA_template>
            <first_frame> N  F  L  K  H  Y  V  K  T  N  K  K  *  V  H  V  *  K  E  F  R  L  K  V  L  V  R  N  V  K  *  R  *  Y  L  L  H  D  R  K  Y  I  N  I  I  L  *  I  L  I  R  H  *  T  Y  I  Y  I  Y  *  G  G  C  E  V  D  N  W  D  S  K  L  F  K  V  E  H  I  I  I  I  I  I  I  S  N  R  C  I  D  E  D  F  K  K  K  K  *  *  T  K  T  S  N  I  I  I  F  F  *  I  M  N  K  V  R  *  V  I  T  Y  I  F  V  Y  *  W  H  G  H  I  Y  I  Y  I  L  Y  I  L  F  W  H  F  *  T  Y  R  S  Y  S  H  E  S  T  P  C  E  N  S  N  S  N  N  N  F  L  K  F  Y  *  I  F  V  S  G  S  F  N  W  *  K  *  L  V  R  L  F  L  T  L  *  A  F  Q  V  K  V  I  T  K  I  *  Y  C  R  T  Y  L  K  I  S  D  E  M  I  I  F  F  *  K  Y  K  N  L  S  D  V  K  I  M  I  I  F  Q  Y  H  F  K  L  *  S  *  I  S  I  *  L  S  R  K  E  R  N  E  C  I  A  I  Y  I  I  L  K  M  *  F  F  *  Q  F  R  L  *  N  I  E  C  I  Y  L  L  D  R  Y  H  G  K  G  R  R  F  V  L  E  K  G  I  D  I  P  L  V  N  K  S  M  *  F  F  E  R  T  L  L  C  S  S  F  F  G  D  M  K  E  K  R  C  M  I  *  R  L  *  W  L  W  G  T  P  *  S  S  Y  T  *  *  T  Y  S  R  Y  F  F  I  *  S  K  I  K  D  V  P  L  V  T  *  K  Y  V  L  L  *  K  S  W  Y  E  K  K  K  R  V   </first_frame>
            <second_frame>  T  F  *  N  I  M  L  K  L  I  K  N  K  F  T  S  E  R  S  L  D  *  R  F  W  Y  E  M  L  N  R  D  D  I  F  Y  T  I  E  N  I  L  I  *  F  Y  R  F  *  F  D  T  K  H  I  Y  I  Y  I  K  V  V  V  R  *  T  T  G  I  R  N  Y  L  K  L  S  I  L  L  L  L  L  L  S  R  T  D  A  *  M  K  T  S  K  R  K  N  N  K  Q  R  Q  V  T  S  S  Y  F  F  K  *  *  I  K  *  D  E  S  S  L  I  Y  L  F  I  N  G  M  A  I  Y  I  Y  I  Y  Y  I  S  C  F  G  I  S  R  H  T  D  L  I  H  M  S  P  H  R  V  K  T  L  I  P  T  T  I  F  *  N  S  I  E  F  L  *  V  V  A  L  I  G  K  N  N  *  C  D  Y  F  *  H  C  E  L  F  K  S  K  S  *  L  K  F  S  I  V  V  R  I  L  K  Y  Q  M  K  *  L  Y  F  F  K  N  I  K  I  *  V  T  *  K  L  *  S  Y  F  N  I  I  S  N  Y  S  L  E  F  L  Y  N  F  H  V  R  N  V  M  N  A  *  L  Y  I  L  Y  *  K  C  D  F  F  N  S  L  D  F  E  T  *  N  V  F  I  C  *  T  D  I  M  E  K  G  E  D  L  C  L  K  K  A  *  T  Y  P  *  *  T  K  A  C  D  F  L  K  E  H  Y  C  V  P  P  F  L  E  T  *  R  K  K  G  V  *  F  R  D  Y  D  G  C  G  V  H  P  D  L  P  T  L  D  E  H  I  R  D  I  S  S  S  N  R  K  L  K  T  S  L  L  *  H  K  N  M  C  Y  Y  E  N  L  G  M  K  K  K  K  G  L  </second_frame>
            <third_frame>   L  S  K  T  L  C  *  N  *  *  K  I  S  S  R  L  K  G  V  *  I  E  G  F  G  T  K  C  *  I  E  M  I  S  S  T  R  *  K  I  Y  *  Y  N  F  I  D  S  D  S  T  L  N  I  Y  I  Y  I  L  R  W  L  *  G  R  Q  L  G  F  E  I  I  *  S  *  A  Y  Y  Y  Y  Y  Y  Y  L  E  Q  M  H  R  *  R  L  Q  K  E  K  I  I  N  K  D  K  *  H  H  H  I  F  L  N  N  E  *  S  K  M  S  H  H  L  Y  I  C  L  L  M  A  W  P  Y  I  Y  I  Y  I  I  Y  L  V  L  A  F  L  D  I  Q  I  L  F  T  *  V  H  T  V  *  K  L  *  F  Q  Q  Q  F  F  E  I  L  L  N  F  C  E  W  *  L  *  L  V  K  I  I  S  A  I  I  F  D  I  V  S  F  S  S  Q  S  H  N  *  N  L  V  L  S  Y  V  S  *  N  I  R  *  N  D  Y  I  F  L  K  I  *  K  F  E  *  R  E  N  Y  D  H  I  S  I  S  F  Q  I  I  V  L  N  F  Y  I  T  F  T  *  G  T  *  *  M  H  S  Y  I  Y  Y  I  E  N  V  I  F  L  T  V  *  T  L  K  H  R  M  Y  L  S  V  R  Q  I  S  W  K  R  E  K  I  C  A  *  K  R  H  R  H  T  L  S  E  Q  K  H  V  I  F  *  K  N  I  I  V  F  L  L  F  W  R  H  E  G  K  K  V  Y  D  L  E  T  M  M  V  V  G  Y  T  L  I  F  L  H  L  M  N  I  F  E  I  F  L  H  L  I  E  N  *  R  R  P  S  C  N  I  K  I  C  V  T  M  K  I  L  V  *  K  K  K  K  G  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLe0076N09.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="20819" PGL_stop="13774"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20819" e_stop="20408"/>
            <exon e_start="19114" e_stop="18889"/>
            <exon e_start="18804" e_stop="18526"/>
            <exon e_start="18425" e_stop="18249"/>
            <exon e_start="17643" e_stop="17590"/>
            <exon e_start="17482" e_stop="17334"/>
            <exon e_start="17105" e_stop="17042"/>
            <exon e_start="16973" e_stop="16803"/>
            <exon e_start="16713" e_stop="16579"/>
            <exon e_start="15775" e_stop="15687"/>
            <exon e_start="14251" e_stop="13779"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.220" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.853" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.940" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.125" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.010" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="20819" e_stop="20408" e_length="412"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.979">
            <gDNA_intron_boundary i_start="20407" i_stop="19115" i_length="1293"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="19114" e_stop="18889" e_length="226"/>
          </exon>
          <intron i_serial="2" don_prob="0.220" acc_prob="0.997">
            <gDNA_intron_boundary i_start="18888" i_stop="18805" i_length="84"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="18804" e_stop="18526" e_length="279"/>
          </exon>
          <intron i_serial="3" don_prob="0.853" acc_prob="0.998">
            <gDNA_intron_boundary i_start="18525" i_stop="18426" i_length="100"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="18425" e_stop="18249" e_length="177"/>
          </exon>
          <intron i_serial="4" don_prob="0.940" acc_prob="0.998">
            <gDNA_intron_boundary i_start="18248" i_stop="17644" i_length="605"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="17643" e_stop="17590" e_length="54"/>
          </exon>
          <intron i_serial="5" don_prob="0.968" acc_prob="1.000">
            <gDNA_intron_boundary i_start="17589" i_stop="17483" i_length="107"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="17482" e_stop="17334" e_length="149"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.125">
            <gDNA_intron_boundary i_start="17333" i_stop="17106" i_length="228"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="17105" e_stop="17042" e_length="64"/>
          </exon>
          <intron i_serial="7" don_prob="0.994" acc_prob="1.000">
            <gDNA_intron_boundary i_start="17041" i_stop="16974" i_length="68"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="16973" e_stop="16803" e_length="171"/>
          </exon>
          <intron i_serial="8" don_prob="0.994" acc_prob="1.000">
            <gDNA_intron_boundary i_start="16802" i_stop="16714" i_length="89"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="16713" e_stop="16579" e_length="135"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="16578" i_stop="15776" i_length="803"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="15775" e_stop="15687" e_length="89"/>
          </exon>
          <intron i_serial="10" don_prob="0.010" acc_prob="0.996">
            <gDNA_intron_boundary i_start="15686" i_stop="14252" i_length="1435"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="14251" e_stop="13779" e_length="473"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20819" stop="20408"/>
              <exon start="19114" stop="19014"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394916" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20818" stop="20408"/>
              <exon start="19114" stop="18889"/>
              <exon start="18804" stop="18756"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379310" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20818" stop="20408"/>
              <exon start="19114" stop="18929"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211304" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20818" stop="20408"/>
              <exon start="19114" stop="19046"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202135" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20798" stop="20408"/>
              <exon start="19114" stop="18889"/>
              <exon start="18804" stop="18742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370880" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20796" stop="20408"/>
              <exon start="19114" stop="18905"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314792" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20782" stop="20408"/>
              <exon start="19114" stop="18907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E417453" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20778" stop="20408"/>
              <exon start="19114" stop="18891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448478" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20776" stop="20615"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446159" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20775" stop="20408"/>
              <exon start="19114" stop="19041"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271300" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20468" stop="20408"/>
              <exon start="19114" stop="18889"/>
              <exon start="18804" stop="18526"/>
              <exon start="18425" stop="18251"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317129" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19012" stop="18889"/>
              <exon start="18804" stop="18526"/>
              <exon start="18425" stop="18249"/>
              <exon start="17643" stop="17594"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18910" stop="18889"/>
              <exon start="18804" stop="18526"/>
              <exon start="18425" stop="18249"/>
              <exon start="17643" stop="17590"/>
              <exon start="17482" stop="17334"/>
              <exon start="17105" stop="17089"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318271" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18706" stop="18526"/>
              <exon start="18425" stop="18249"/>
              <exon start="17643" stop="17590"/>
              <exon start="17482" stop="17334"/>
              <exon start="17105" stop="17052"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213256" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18678" stop="18526"/>
              <exon start="18425" stop="18249"/>
              <exon start="17643" stop="17590"/>
              <exon start="17482" stop="17334"/>
              <exon start="17105" stop="17042"/>
              <exon start="16973" stop="16902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254248" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18597" stop="18526"/>
              <exon start="18425" stop="18249"/>
              <exon start="17643" stop="17590"/>
              <exon start="17482" stop="17387"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235953" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18575" stop="18526"/>
              <exon start="18425" stop="18249"/>
              <exon start="17643" stop="17590"/>
              <exon start="17482" stop="17334"/>
              <exon start="17105" stop="17042"/>
              <exon start="16973" stop="16820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207688" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18271" stop="18249"/>
              <exon start="17643" stop="17590"/>
              <exon start="17482" stop="17334"/>
              <exon start="17105" stop="17042"/>
              <exon start="16973" stop="16803"/>
              <exon start="16713" stop="16680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228523" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17480" stop="17334"/>
              <exon start="17105" stop="17042"/>
              <exon start="16973" stop="16803"/>
              <exon start="16713" stop="16637"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203764" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17438" stop="17334"/>
              <exon start="17105" stop="17042"/>
              <exon start="16973" stop="16803"/>
              <exon start="16713" stop="16579"/>
              <exon start="15775" stop="15687"/>
              <exon start="14251" stop="13923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731875" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17437" stop="17334"/>
              <exon start="17105" stop="17042"/>
              <exon start="16973" stop="16803"/>
              <exon start="16713" stop="16579"/>
              <exon start="15775" stop="15730"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272295" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16899" stop="16803"/>
              <exon start="16713" stop="16579"/>
              <exon start="15775" stop="15687"/>
              <exon start="14251" stop="13825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690464" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16807" stop="16803"/>
              <exon start="16713" stop="16579"/>
              <exon start="15775" stop="15687"/>
              <exon start="14251" stop="13795"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394915" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16642" stop="16579"/>
              <exon start="15775" stop="15687"/>
              <exon start="14251" stop="13900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379194" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15723" stop="15687"/>
              <exon start="14251" stop="13779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290504" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAAAAAGAAAAAAAACAGAGAAATTTATTCCGCCATGGCTACATCTTTGAGCTCACCAAAGCTCAGTACAACTCTTTCTTCTCCAACTTTCCATTCTCTTTACAAGACCAAATTCTCTAATTTCTCTCTTCTTTCTCTCTCTAACCCTATCAAGCCTCTCCGCTTCAATTTTCTCTCTCATACCCGTACCTCATCATTATCTTATGGCCGCCGTTTCACTACTCCTCGTGCTGAGTCATCTAATGGAGCTGAAACTCCTCGGCATTACGATTTCGATTTATTCACTATAGGTGCTGGTAGTGGTGGCGTTAGGGCTTCTCGTTTTGCTTCTAATTTTGGGGCTTCGGTTGCTGTTTGTGAGCTTCCTTTCTCTACTATATCTTCTGATTCAACTGGAGGCGTCGGTGGCAC : GTGTGTGCTTCGGGGATGTGTACCCAAGAAATTGCTCGTATATGCATCAAAATATTCTCATGAGTTTGAGGAGAGTTGTGGTTTTGGATGGAACTATGAGGCAGAACCTAAACATGATTGGAGCACCCTCATTGCTAATAAAAATGCCGAGTTGCAGCGCCTCACGGGTATCTACAAGAATATTCTGAAGAATGCGGATGTCACTCTGATAGAAGGGCGGGGAAAG : GTGGTGGATCCTCATACAGTGGATGTGGATGGTAAACTCTACTCGGCTAAGAACATACTAATTTCAGTTGGGGGCCGCCCATTTATCCCAGACATTCCTGGAAGCGAGTATGCTATAGATTCTGATGCTGCCCTTGATTTGCCAACGAAGCCTGACAAAATTGCCATTGTTGGAGGCGGTTATATTGCACTTGAATTTGCTGGAATCTTCAATGGATTGAAAAGTGAGGTCCATGTATTTATACGACAAAAGAAGGTTTTGAGAGGCTTTGATGAAGAA : ATTAGGGATTTTGTTGGTGAACAGATGTCACTGAGAGGCATTGAGTTCCATACCGAGGAGTCGCCTCAGGCTATTGTCAAGTCAGCAGATGGTTCACTGTCTATAAAGACTAACAGAGGAACAGTTGAAGGTTTCTCTCATATCATGTTTGCAACAGGACGAAGTCCAAATACTAAG : AATTTAGGATTAGATACAGTGGGAGTGAAAATGACAAAGAACGGAGCCATAGAG : GTTGACGAGTATTCTCGTACATCAGTGCCATCAATTTGGGCAGTTGGAGATGTTACTGATAGAATTAATCTAACTCCAGTTGCTTTGATGGAGGGAGGAGCATTGGCAAAAACTATTTTTGCTGGTGAACCCACAAAACCTGATTATAG : GAACGTACCATGTGCAGTATTTTCCCAGCCACCTATTGGACTAGTTGGCCTGACAGAAGAAGAG : GCCATCAAAGAATATGGTGATGTTGATGTTTATACAGCAAATTTTAGACCATTAAAGGCCACTCTTTCTGGTCTTCCAGATCGGGTTTTCATGAAATTGGTAGTATGTGCGAAGTCTAGCAAAGTTCTGGGCTTGCACATGTGTGGAGACGATGCACCAGAAATTGTACAG : GGATTTGCGGTTGCAGTCAAAGCAGGGTTGACCAAGGCGGACTTCGATACCACTGTGGGTATTCACCCTACAGCAGCAGAGGAGTTTGTCACCATGCGAACCCCAACAAGGAAGATTCGAAGCAGTCCATCTGAG : GGTAAGGCAGAGCACGACTCTAAAGCTGCTGCAAGAGTTTGATATGCGGCGATAAAGGCTCAATTTGTTAAGTGACACAGAGAACACGA : GTACAATTTGAAAGAGGTTTTAGACTGATGAGAGCTTATGGAACATCAGTATGGAGTTACAACGAGCAAAAAACTTTCTAAGACAATGAGTCACTAATACTTCTTGGAACAAATGCTAACTTCACTACTTAAAAAGGTCTCTCAAGGTGGTTGCGATGATGGTATATGCATTTATCCATTGGCTTGCATCTTGTCAACAGTGTTTCCTTTGATCAAAGTAATTGAGGTTAAACATTCTGTCCAGATTTTATTTAGGGGAGTCCAGAGGATTGCTGACTAATATCTTGATGATGCTTTTCTCCGTTATTCTACTTTTCTGCTGGGTTTGAGGGCGCATTTGGGCGGTGTAATTATAACATTGCTTATTAAGTATTGTTTTTGTAATTATAAAATTAGTTGATATGCTGCAATAATAGCAGTTAAGCGGATTGCTTAATGGCTTTTATATATTGGAAATGTTCATTTTCCTAAAA</gDNA_template>
            <first_frame> Q  K  R  K  K  T  E  K  F  I  P  P  W  L  H  L  *  A  H  Q  S  S  V  Q  L  F  L  L  Q  L  S  I  L  F  T  R  P  N  S  L  I  S  L  F  F  L  S  L  T  L  S  S  L  S  A  S  I  F  S  L  I  P  V  P  H  H  Y  L  M  A  A  V  S  L  L  L  V  L  S  H  L  M  E  L  K  L  L  G  I  T  I  S  I  Y  S  L  *  V  L  V  V  V  A  L  G  L  L  V  L  L  L  I  L  G  L  R  L  L  F  V  S  F  L  S  L  L  Y  L  L  I  Q  L  E  A  S  V  A   : R  V  C  F  G  D  V  Y  P  R  N  C  S  Y  M  H  Q  N  I  L  M  S  L  R  R  V  V  V  L  D  G  T  M  R  Q  N  L  N  M  I  G  A  P  S  L  L  I  K  M  P  S  C  S  A  S  R  V  S  T  R  I  F  *  R  M  R  M  S  L  *  *  K  G  G  E  R :   W  W  I  L  I  Q  W  M  W  M  V  N  S  T  R  L  R  T  Y  *  F  Q  L  G  A  A  H  L  S  Q  T  F  L  E  A  S  M  L  *  I  L  M  L  P  L  I  C  Q  R  S  L  T  K  L  P  L  L  E  A  V  I  L  H  L  N  L  L  E  S  S  M  D  *  K  V  R  S  M  Y  L  Y  D  K  R  R  F  *  E  A  L  M  K  K :   L  G  I  L  L  V  N  R  C  H  *  E  A  L  S  S  I  P  R  S  R  L  R  L  L  S  S  Q  Q  M  V  H  C  L  *  R  L  T  E  E  Q  L  K  V  S  L  I  S  C  L  Q  Q  D  E  V  Q  I  L  R :   I  *  D  *  I  Q  W  E  *  K  *  Q  R  T  E  P  *  R :   L  T  S  I  L  V  H  Q  C  H  Q  F  G  Q  L  E  M  L  L  I  E  L  I  *  L  Q  L  L  *  W  R  E  E  H  W  Q  K  L  F  L  L  V  N  P  Q  N  L  I  I   : G  T  Y  H  V  Q  Y  F  P  S  H  L  L  D  *  L  A  *  Q  K  K  R :   P  S  K  N  M  V  M  L  M  F  I  Q  Q  I  L  D  H  *  R  P  L  F  L  V  F  Q  I  G  F  S  *  N  W  *  Y  V  R  S  L  A  K  F  W  A  C  T  C  V  E  T  M  H  Q  K  L  Y  R :   D  L  R  L  Q  S  K  Q  G  *  P  R  R  T  S  I  P  L  W  V  F  T  L  Q  Q  Q  R  S  L  S  P  C  E  P  Q  Q  G  R  F  E  A  V  H  L  R :   V  R  Q  S  T  T  L  K  L  L  Q  E  F  D  M  R  R  *  R  L  N  L  L  S  D  T  E  N  T   : S  T  I  *  K  R  F  *  T  D  E  S  L  W  N  I  S  M  E  L  Q  R  A  K  N  F  L  R  Q  *  V  T  N  T  S  W  N  K  C  *  L  H  Y  L  K  R  S  L  K  V  V  A  M  M  V  Y  A  F  I  H  W  L  A  S  C  Q  Q  C  F  L  *  S  K  *  L  R  L  N  I  L  S  R  F  Y  L  G  E  S  R  G  L  L  T  N  I  L  M  M  L  F  S  V  I  L  L  F  C  W  V  *  G  R  I  W  A  V  *  L  *  H  C  L  L  S  I  V  F  V  I  I  K  L  V  D  M  L  Q  *  *  Q  L  S  G  L  L  N  G  F  Y  I  L  E  M  F  I  F  L  K </first_frame>
            <second_frame>  K  K  E  K  K  Q  R  N  L  F  R  H  G  Y  I  F  E  L  T  K  A  Q  Y  N  S  F  F  S  N  F  P  F  S  L  Q  D  Q  I  L  *  F  L  S  S  F  S  L  *  P  Y  Q  A  S  P  L  Q  F  S  L  S  Y  P  Y  L  I  I  I  L  W  P  P  F  H  Y  S  S  C  *  V  I  *  W  S  *  N  S  S  A  L  R  F  R  F  I  H  Y  R  C  W  *  W  W  R  *  G  F  S  F  C  F  *  F  W  G  F  G  C  C  L  *  A  S  F  L  Y  Y  I  F  *  F  N  W  R  R  R  W  H  :  V  C  A  S  G  M  C  T  Q  E  I  A  R  I  C  I  K  I  F  S  *  V  *  G  E  L  W  F  W  M  E  L  *  G  R  T  *  T  *  L  E  H  P  H  C  *  *  K  C  R  V  A  A  P  H  G  Y  L  Q  E  Y  S  E  E  C  G  C  H  S  D  R  R  A  G  K   : G  G  G  S  S  Y  S  G  C  G  W  *  T  L  L  G  *  E  H  T  N  F  S  W  G  P  P  I  Y  P  R  H  S  W  K  R  V  C  Y  R  F  *  C  C  P  *  F  A  N  E  A  *  Q  N  C  H  C  W  R  R  L  Y  C  T  *  I  C  W  N  L  Q  W  I  E  K  *  G  P  C  I  Y  T  T  K  E  G  F  E  R  L  *  *  R   : N  *  G  F  C  W  *  T  D  V  T  E  R  H  *  V  P  Y  R  G  V  A  S  G  Y  C  Q  V  S  R  W  F  T  V  Y  K  D  *  Q  R  N  S  *  R  F  L  S  Y  H  V  C  N  R  T  K  S  K  Y  *   : E  F  R  I  R  Y  S  G  S  E  N  D  K  E  R  S  H  R   : G  *  R  V  F  S  Y  I  S  A  I  N  L  G  S  W  R  C  Y  *  *  N  *  S  N  S  S  C  F  D  G  G  R  S  I  G  K  N  Y  F  C  W  *  T  H  K  T  *  L  *  :  E  R  T  M  C  S  I  F  P  A  T  Y  W  T  S  W  P  D  R  R  R   : G  H  Q  R  I  W  *  C  *  C  L  Y  S  K  F  *  T  I  K  G  H  S  F  W  S  S  R  S  G  F  H  E  I  G  S  M  C  E  V  *  Q  S  S  G  L  A  H  V  W  R  R  C  T  R  N  C  T   : G  I  C  G  C  S  Q  S  R  V  D  Q  G  G  L  R  Y  H  C  G  Y  S  P  Y  S  S  R  G  V  C  H  H  A  N  P  N  K  E  D  S  K  Q  S  I  *   : G  *  G  R  A  R  L  *  S  C  C  K  S  L  I  C  G  D  K  G  S  I  C  *  V  T  Q  R  T  R  :  V  Q  F  E  R  G  F  R  L  M  R  A  Y  G  T  S  V  W  S  Y  N  E  Q  K  T  F  *  D  N  E  S  L  I  L  L  G  T  N  A  N  F  T  T  *  K  G  L  S  R  W  L  R  *  W  Y  M  H  L  S  I  G  L  H  L  V  N  S  V  S  F  D  Q  S  N  *  G  *  T  F  C  P  D  F  I  *  G  S  P  E  D  C  *  L  I  S  *  *  C  F  S  P  L  F  Y  F  S  A  G  F  E  G  A  F  G  R  C  N  Y  N  I  A  Y  *  V  L  F  L  *  L  *  N  *  L  I  C  C  N  N  S  S  *  A  D  C  L  M  A  F  I  Y  W  K  C  S  F  S  *   </second_frame>
            <third_frame>   K  K  K  K  N  R  E  I  Y  S  A  M  A  T  S  L  S  S  P  K  L  S  T  T  L  S  S  P  T  F  H  S  L  Y  K  T  K  F  S  N  F  S  L  L  S  L  S  N  P  I  K  P  L  R  F  N  F  L  S  H  T  R  T  S  S  L  S  Y  G  R  R  F  T  T  P  R  A  E  S  S  N  G  A  E  T  P  R  H  Y  D  F  D  L  F  T  I  G  A  G  S  G  G  V  R  A  S  R  F  A  S  N  F  G  A  S  V  A  V  C  E  L  P  F  S  T  I  S  S  D  S  T  G  G  V  G  G  T :   C  V  L  R  G  C  V  P  K  K  L  L  V  Y  A  S  K  Y  S  H  E  F  E  E  S  C  G  F  G  W  N  Y  E  A  E  P  K  H  D  W  S  T  L  I  A  N  K  N  A  E  L  Q  R  L  T  G  I  Y  K  N  I  L  K  N  A  D  V  T  L  I  E  G  R  G  K  :  V  V  D  P  H  T  V  D  V  D  G  K  L  Y  S  A  K  N  I  L  I  S  V  G  G  R  P  F  I  P  D  I  P  G  S  E  Y  A  I  D  S  D  A  A  L  D  L  P  T  K  P  D  K  I  A  I  V  G  G  G  Y  I  A  L  E  F  A  G  I  F  N  G  L  K  S  E  V  H  V  F  I  R  Q  K  K  V  L  R  G  F  D  E  E  :  I  R  D  F  V  G  E  Q  M  S  L  R  G  I  E  F  H  T  E  E  S  P  Q  A  I  V  K  S  A  D  G  S  L  S  I  K  T  N  R  G  T  V  E  G  F  S  H  I  M  F  A  T  G  R  S  P  N  T  K  :  N  L  G  L  D  T  V  G  V  K  M  T  K  N  G  A  I  E  :  V  D  E  Y  S  R  T  S  V  P  S  I  W  A  V  G  D  V  T  D  R  I  N  L  T  P  V  A  L  M  E  G  G  A  L  A  K  T  I  F  A  G  E  P  T  K  P  D  Y  R :   N  V  P  C  A  V  F  S  Q  P  P  I  G  L  V  G  L  T  E  E  E  :  A  I  K  E  Y  G  D  V  D  V  Y  T  A  N  F  R  P  L  K  A  T  L  S  G  L  P  D  R  V  F  M  K  L  V  V  C  A  K  S  S  K  V  L  G  L  H  M  C  G  D  D  A  P  E  I  V  Q  :  G  F  A  V  A  V  K  A  G  L  T  K  A  D  F  D  T  T  V  G  I  H  P  T  A  A  E  E  F  V  T  M  R  T  P  T  R  K  I  R  S  S  P  S  E  :  G  K  A  E  H  D  S  K  A  A  A  R  V  *  Y  A  A  I  K  A  Q  F  V  K  *  H  R  E  H  E :   Y  N  L  K  E  V  L  D  *  *  E  L  M  E  H  Q  Y  G  V  T  T  S  K  K  L  S  K  T  M  S  H  *  Y  F  L  E  Q  M  L  T  S  L  L  K  K  V  S  Q  G  G  C  D  D  G  I  C  I  Y  P  L  A  C  I  L  S  T  V  F  P  L  I  K  V  I  E  V  K  H  S  V  Q  I  L  F  R  G  V  Q  R  I  A  D  *  Y  L  D  D  A  F  L  R  Y  S  T  F  L  L  G  L  R  A  H  L  G  G  V  I  I  T  L  L  I  K  Y  C  F  C  N  Y  K  I  S  *  Y  A  A  I  I  A  V  K  R  I  A  *  W  L  L  Y  I  G  N  V  H  F  P  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0076N09.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20817" stop="20408"/>
                    <exon start="19114" stop="18889"/>
                    <exon start="18804" stop="18526"/>
                    <exon start="18425" stop="18249"/>
                    <exon start="17643" stop="17590"/>
                    <exon start="17482" stop="17334"/>
                    <exon start="17105" stop="17042"/>
                    <exon start="16973" stop="16803"/>
                    <exon start="16713" stop="16579"/>
                    <exon start="15775" stop="15734"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1704</number_coding_nucleotides>
                  <number_encoded_amino_acids>568</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKKKNREIYSAMATSLSSPKLSTTLSSPTFHSLYKTKFSNFSLLSLSNPIKPLRFNFLSHTRTSSLSYGRRFTTPRAESSNGAETPRHYDFDLFTIGAGSGGVRASRFASNFGASVAVCELPFSTISSDSTGGVGGTCVLRGCVPKKLLVYASKYSHEFEESCGFGWNYEAEPKHDWSTLIANKNAELQRLTGIYKNILKNADVTLIEGRGKVVDPHTVDVDGKLYSAKNILISVGGRPFIPDIPGSEYAIDSDAALDLPTKPDKIAIVGGGYIALEFAGIFNGLKSEVHVFIRQKKVLRGFDEEIRDFVGEQMSLRGIEFHTEESPQAIVKSADGSLSIKTNRGTVEGFSHIMFATGRSPNTKNLGLDTVGVKMTKNGAIEVDEYSRTSVPSIWAVGDVTDRINLTPVALMEGGALAKTIFAGEPTKPDYRNVPCAVFSQPPIGLVGLTEEEAIKEYGDVDVYTANFRPLKATLSGLPDRVFMKLVVCAKSSKVLGLHMCGDDAPEIVQGFAVAVKAGLTKADFDTTVGIHPTAAEEFVTMRTPTRKIRSSPSEGKAEHDSKAAARV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="16715" e_stop="16579"/>
            <exon e_start="15775" e_stop="15687"/>
            <exon e_start="14251" e_stop="13774"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.010" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="16715" e_stop="16579" e_length="137"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="16578" i_stop="15776" i_length="803"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15775" e_stop="15687" e_length="89"/>
          </exon>
          <intron i_serial="2" don_prob="0.010" acc_prob="0.996">
            <gDNA_intron_boundary i_start="15686" i_stop="14252" i_length="1435"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="14251" e_stop="13774" e_length="478"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16715" stop="16579"/>
              <exon start="15775" stop="15687"/>
              <exon start="14251" stop="13774"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370879" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16642" stop="16579"/>
              <exon start="15775" stop="15687"/>
              <exon start="14251" stop="13900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379194" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15723" stop="15687"/>
              <exon start="14251" stop="13779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290504" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGGGATTTGCGGTTGCAGTCAAAGCAGGGTTGACCAAGGCGGACTTCGATACCACTGTGGGTATTCACCCTACAGCAGCAGAGGAGTTTGTCACCATGCGAACCCCAACAAGGAAGATTCGAAGCAGTCCATCTGAG : GGTAAGGCAGAGCACGACTCTAAAGCTGCTGCAAGAGTTTGATATGCGGCGATAAAGGCTCAATTTGTTAAGTGACACAGAGAACACGA : GTACAATTTGAAAGAGGTTTTAGACTGATGAGAGCTTATGGAACATCAGTATGGAGTTACAACGAGCAAAAAACTTTCTAAGACAATGAGTCACTAATACTTCTTGGAACAAATGCTAACTTCACTACTTAAAAAGGTCTCTCAAGGTGGTTGCGATGATGGTATATGCATTTATCCATTGGCTTGCATCTTGTCAACAGTGTTTCCTTTGATCAAAGTAATTGAGGTTAAACATTCTGTCCAGATTTTATTTAGGGGAGTCCAGAGGATTGCTGACTAATATCTTGATGATGCTTTTCTCCGTTATTCTACTTTTCTGCTGGGTTTGAGGGCGCATTTGGGCGGTGTAATTATAACATTGCTTATTAAGTATTGTTTTTGTAATTATAAAATTAGTTGATATGCTGCAATAATAGCAGTTAAGCGGATTGCTTAATGGCTTTTATATATTGGAAATGTTCATTTTCCTAAAACTACT</gDNA_template>
            <first_frame> R  D  L  R  L  Q  S  K  Q  G  *  P  R  R  T  S  I  P  L  W  V  F  T  L  Q  Q  Q  R  S  L  S  P  C  E  P  Q  Q  G  R  F  E  A  V  H  L  R :   V  R  Q  S  T  T  L  K  L  L  Q  E  F  D  M  R  R  *  R  L  N  L  L  S  D  T  E  N  T   : S  T  I  *  K  R  F  *  T  D  E  S  L  W  N  I  S  M  E  L  Q  R  A  K  N  F  L  R  Q  *  V  T  N  T  S  W  N  K  C  *  L  H  Y  L  K  R  S  L  K  V  V  A  M  M  V  Y  A  F  I  H  W  L  A  S  C  Q  Q  C  F  L  *  S  K  *  L  R  L  N  I  L  S  R  F  Y  L  G  E  S  R  G  L  L  T  N  I  L  M  M  L  F  S  V  I  L  L  F  C  W  V  *  G  R  I  W  A  V  *  L  *  H  C  L  L  S  I  V  F  V  I  I  K  L  V  D  M  L  Q  *  *  Q  L  S  G  L  L  N  G  F  Y  I  L  E  M  F  I  F  L  K  L   </first_frame>
            <second_frame>  G  I  C  G  C  S  Q  S  R  V  D  Q  G  G  L  R  Y  H  C  G  Y  S  P  Y  S  S  R  G  V  C  H  H  A  N  P  N  K  E  D  S  K  Q  S  I  *   : G  *  G  R  A  R  L  *  S  C  C  K  S  L  I  C  G  D  K  G  S  I  C  *  V  T  Q  R  T  R  :  V  Q  F  E  R  G  F  R  L  M  R  A  Y  G  T  S  V  W  S  Y  N  E  Q  K  T  F  *  D  N  E  S  L  I  L  L  G  T  N  A  N  F  T  T  *  K  G  L  S  R  W  L  R  *  W  Y  M  H  L  S  I  G  L  H  L  V  N  S  V  S  F  D  Q  S  N  *  G  *  T  F  C  P  D  F  I  *  G  S  P  E  D  C  *  L  I  S  *  *  C  F  S  P  L  F  Y  F  S  A  G  F  E  G  A  F  G  R  C  N  Y  N  I  A  Y  *  V  L  F  L  *  L  *  N  *  L  I  C  C  N  N  S  S  *  A  D  C  L  M  A  F  I  Y  W  K  C  S  F  S  *  N  Y  </second_frame>
            <third_frame>   G  F  A  V  A  V  K  A  G  L  T  K  A  D  F  D  T  T  V  G  I  H  P  T  A  A  E  E  F  V  T  M  R  T  P  T  R  K  I  R  S  S  P  S  E  :  G  K  A  E  H  D  S  K  A  A  A  R  V  *  Y  A  A  I  K  A  Q  F  V  K  *  H  R  E  H  E :   Y  N  L  K  E  V  L  D  *  *  E  L  M  E  H  Q  Y  G  V  T  T  S  K  K  L  S  K  T  M  S  H  *  Y  F  L  E  Q  M  L  T  S  L  L  K  K  V  S  Q  G  G  C  D  D  G  I  C  I  Y  P  L  A  C  I  L  S  T  V  F  P  L  I  K  V  I  E  V  K  H  S  V  Q  I  L  F  R  G  V  Q  R  I  A  D  *  Y  L  D  D  A  F  L  R  Y  S  T  F  L  L  G  L  R  A  H  L  G  G  V  I  I  T  L  L  I  K  Y  C  F  C  N  Y  K  I  S  *  Y  A  A  I  I  A  V  K  R  I  A  *  W  L  L  Y  I  G  N  V  H  F  P  K  T  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLe0076N09.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="15002" e_stop="14742"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="15002" e_stop="14742" e_length="261"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15002" stop="14742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252015" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGATGTGGGATATTGTAACTGCACAACTCTTTTATGATGCATCTAATTAAGTGTTCAATTTTTGGTTTCTTATTTTATTCTCTTACAACTGAGGTGATTGTTGGTGTCCAAAATGATTACTGCTCCTTCGGCTCCAGTTTATGCGACACTGTGTCCTTATTATTCTGTTTAAAAATGAGTGACACGATTCTATATTTGGAAGCATGAACTTACTTTTTTGCTCTTAATTTGAACTTTGAAGCTTTTATTGCCATACTATG</gDNA_template>
            <first_frame> W  M  W  D  I  V  T  A  Q  L  F  Y  D  A  S  N  *  V  F  N  F  W  F  L  I  L  F  S  Y  N  *  G  D  C  W  C  P  K  *  L  L  L  L  R  L  Q  F  M  R  H  C  V  L  I  I  L  F  K  N  E  *  H  D  S  I  F  G  S  M  N  L  L  F  C  S  *  F  E  L  *  S  F  Y  C  H  T  M </first_frame>
            <second_frame>  G  C  G  I  L  *  L  H  N  S  F  M  M  H  L  I  K  C  S  I  F  G  F  L  F  Y  S  L  T  T  E  V  I  V  G  V  Q  N  D  Y  C  S  F  G  S  S  L  C  D  T  V  S  L  L  F  C  L  K  M  S  D  T  I  L  Y  L  E  A  *  T  Y  F  F  A  L  N  L  N  F  E  A  F  I  A  I  L   </second_frame>
            <third_frame>   D  V  G  Y  C  N  C  T  T  L  L  *  C  I  *  L  S  V  Q  F  L  V  S  Y  F  I  L  L  Q  L  R  *  L  L  V  S  K  M  I  T  A  P  S  A  P  V  Y  A  T  L  C  P  Y  Y  S  V  *  K  *  V  T  R  F  Y  I  W  K  H  E  L  T  F  L  L  L  I  *  T  L  K  L  L  L  P  Y  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLe0076N09.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="24579" PGL_stop="23243"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24579" e_stop="24408"/>
            <exon e_start="23744" e_stop="23266"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="24579" e_stop="24408" e_length="172"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663"/>
          </intron>
          <exon e_serial="2" e_score="0.989">
            <gDNA_exon_boundary e_start="23744" e_stop="23266" e_length="479"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24579" stop="24408"/>
              <exon start="23744" stop="23305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732824" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24578" stop="24408"/>
              <exon start="23744" stop="23305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727953" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24575" stop="24408"/>
              <exon start="23744" stop="23338"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285074" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24566" stop="24408"/>
              <exon start="23744" stop="23316"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293186" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24566" stop="24408"/>
              <exon start="23744" stop="23389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293036" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24561" stop="24408"/>
              <exon start="23744" stop="23342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612366" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24559" stop="24408"/>
              <exon start="23744" stop="23373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732879" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24558" stop="24408"/>
              <exon start="23744" stop="23311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402239" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24558" stop="24408"/>
              <exon start="23744" stop="23452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401876" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24557" stop="24408"/>
              <exon start="23744" stop="23306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E403097" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24556" stop="24408"/>
              <exon start="23744" stop="23315"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339527" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24556" stop="24408"/>
              <exon start="23744" stop="23322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24556" stop="24408"/>
              <exon start="23744" stop="23322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555441" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24556" stop="24408"/>
              <exon start="23744" stop="23327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402385" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24555" stop="24408"/>
              <exon start="23744" stop="23320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E616095" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24555" stop="24408"/>
              <exon start="23744" stop="23342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572068" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24552" stop="24408"/>
              <exon start="23744" stop="23373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339021" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24551" stop="24408"/>
              <exon start="23744" stop="23311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733090" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24551" stop="24408"/>
              <exon start="23744" stop="23315"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373032" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24551" stop="24408"/>
              <exon start="23744" stop="23362"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740871" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24551" stop="24408"/>
              <exon start="23744" stop="23362"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732499" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24550" stop="24408"/>
              <exon start="23744" stop="23315"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373033" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24550" stop="24408"/>
              <exon start="23744" stop="23371"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291473" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24549" stop="24408"/>
              <exon start="23744" stop="23309"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732425" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24549" stop="24408"/>
              <exon start="23744" stop="23343"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24549" stop="24408"/>
              <exon start="23744" stop="23354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322912" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24549" stop="24408"/>
              <exon start="23744" stop="23355"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322821" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24549" stop="24408"/>
              <exon start="23744" stop="23362"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738777" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24548" stop="24408"/>
              <exon start="23744" stop="23316"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572680" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24548" stop="24408"/>
              <exon start="23744" stop="23319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692851" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24548" stop="24408"/>
              <exon start="23744" stop="23324"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398412" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24548" stop="24408"/>
              <exon start="23744" stop="23373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735284" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24547" stop="24408"/>
              <exon start="23744" stop="23307"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296150" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24547" stop="24408"/>
              <exon start="23744" stop="23312"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E611427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24547" stop="24408"/>
              <exon start="23744" stop="23314"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E415221" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24547" stop="24408"/>
              <exon start="23744" stop="23315"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733326" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24547" stop="24408"/>
              <exon start="23744" stop="23317"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296661" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24547" stop="24408"/>
              <exon start="23744" stop="23318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E610873" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24547" stop="24408"/>
              <exon start="23744" stop="23321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400790" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24547" stop="24408"/>
              <exon start="23744" stop="23324"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E615240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24547" stop="24408"/>
              <exon start="23744" stop="23324"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296167" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24547" stop="24408"/>
              <exon start="23744" stop="23326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E415222" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24547" stop="24408"/>
              <exon start="23744" stop="23326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293337" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24547" stop="24408"/>
              <exon start="23744" stop="23343"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612654" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24547" stop="24408"/>
              <exon start="23744" stop="23345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E611584" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24547" stop="24408"/>
              <exon start="23744" stop="23366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289671" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24547" stop="24408"/>
              <exon start="23744" stop="23366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732424" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24547" stop="24408"/>
              <exon start="23744" stop="23382"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296937" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24547" stop="24408"/>
              <exon start="23744" stop="23408"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292912" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24547" stop="24408"/>
              <exon start="23744" stop="23552"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475421" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24547" stop="24408"/>
              <exon start="23744" stop="23659"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295765" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24546" stop="24408"/>
              <exon start="23744" stop="23313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573212" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24545" stop="24408"/>
              <exon start="23744" stop="23343"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696691" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24544" stop="24408"/>
              <exon start="23744" stop="23278"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24544" stop="24408"/>
              <exon start="23744" stop="23317"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292012" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24544" stop="24408"/>
              <exon start="23744" stop="23326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735268" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24544" stop="24408"/>
              <exon start="23744" stop="23333"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292001" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24544" stop="24408"/>
              <exon start="23744" stop="23373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732139" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24544" stop="24408"/>
              <exon start="23744" stop="23374"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296751" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24543" stop="24408"/>
              <exon start="23744" stop="23277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373878" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24543" stop="24408"/>
              <exon start="23744" stop="23294"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292068" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24543" stop="24408"/>
              <exon start="23744" stop="23310"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732320" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24543" stop="24408"/>
              <exon start="23744" stop="23325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292025" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24543" stop="24408"/>
              <exon start="23744" stop="23326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290738" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24543" stop="24408"/>
              <exon start="23744" stop="23329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290856" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24543" stop="24408"/>
              <exon start="23744" stop="23366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24543" stop="24408"/>
              <exon start="23744" stop="23370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294106" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24543" stop="24408"/>
              <exon start="23744" stop="23373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734908" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24543" stop="24408"/>
              <exon start="23744" stop="23373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734503" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24543" stop="24408"/>
              <exon start="23744" stop="23373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24543" stop="24408"/>
              <exon start="23744" stop="23374"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282593" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24543" stop="24408"/>
              <exon start="23744" stop="23381"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295008" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24543" stop="24408"/>
              <exon start="23744" stop="23382"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297873" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24542" stop="24408"/>
              <exon start="23744" stop="23307"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371949" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24542" stop="24408"/>
              <exon start="23744" stop="23315"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296230" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24542" stop="24408"/>
              <exon start="23744" stop="23316"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290052" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24542" stop="24408"/>
              <exon start="23744" stop="23344"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612031" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24542" stop="24408"/>
              <exon start="23744" stop="23347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296656" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24542" stop="24408"/>
              <exon start="23744" stop="23356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290264" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24542" stop="24408"/>
              <exon start="23744" stop="23362"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24542" stop="24408"/>
              <exon start="23744" stop="23456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232747" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24542" stop="24408"/>
              <exon start="23744" stop="23574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297515" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24541" stop="24408"/>
              <exon start="23744" stop="23305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24541" stop="24408"/>
              <exon start="23744" stop="23315"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253712" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24541" stop="24408"/>
              <exon start="23744" stop="23349"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261201" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24541" stop="24408"/>
              <exon start="23744" stop="23350"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282871" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24541" stop="24408"/>
              <exon start="23744" stop="23366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283320" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24541" stop="24408"/>
              <exon start="23744" stop="23380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282397" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24541" stop="24408"/>
              <exon start="23744" stop="23393"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291418" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24541" stop="24408"/>
              <exon start="23744" stop="23462"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292047" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24540" stop="24408"/>
              <exon start="23744" stop="23318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282904" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24540" stop="24408"/>
              <exon start="23744" stop="23371"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282506" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24540" stop="24408"/>
              <exon start="23744" stop="23533"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296902" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24534" stop="24408"/>
              <exon start="23744" stop="23470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296835" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24532" stop="24408"/>
              <exon start="23744" stop="23311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460290" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24532" stop="24408"/>
              <exon start="23744" stop="23355"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735055" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24528" stop="24408"/>
              <exon start="23744" stop="23373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737101" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24528" stop="24408"/>
              <exon start="23744" stop="23373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735631" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24528" stop="24408"/>
              <exon start="23744" stop="23373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735846" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24528" stop="24408"/>
              <exon start="23744" stop="23373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739637" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24528" stop="24408"/>
              <exon start="23744" stop="23397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712975" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24527" stop="24408"/>
              <exon start="23744" stop="23277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378287" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24527" stop="24408"/>
              <exon start="23744" stop="23581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291247" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24526" stop="24408"/>
              <exon start="23744" stop="23355"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24525" stop="24408"/>
              <exon start="23744" stop="23315"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733245" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24524" stop="24408"/>
              <exon start="23744" stop="23328"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E413910" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24524" stop="24408"/>
              <exon start="23744" stop="23628"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472902" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24523" stop="24408"/>
              <exon start="23744" stop="23306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24521" stop="24408"/>
              <exon start="23744" stop="23313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291544" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24521" stop="24408"/>
              <exon start="23744" stop="23350"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24519" stop="24408"/>
              <exon start="23744" stop="23366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286735" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24515" stop="24408"/>
              <exon start="23744" stop="23343"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347443" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24505" stop="24408"/>
              <exon start="23744" stop="23323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24498" stop="24408"/>
              <exon start="23744" stop="23312"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339082" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24489" stop="24408"/>
              <exon start="23744" stop="23315"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E622604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24483" stop="24408"/>
              <exon start="23744" stop="23348"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724660" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24475" stop="24408"/>
              <exon start="23744" stop="23356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298499" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24472" stop="24408"/>
              <exon start="23744" stop="23329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202715" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24472" stop="24408"/>
              <exon start="23744" stop="23441"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281193" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23738" stop="23276"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292048" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23724" stop="23266"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283851" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23721" stop="23307"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E403531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23699" stop="23326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297289" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23693" stop="23315"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234499" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23692" stop="23315"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235171" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23686" stop="23324"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222744" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23684" stop="23489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391204" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23601" stop="23355"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292770" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23540" stop="23314"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290087" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATAAACTGAGTTGATAATAGCCCTATCAACAAAAAAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTG : GATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTATTTTTCCTTCTCCTCTTTCAATAATCCTTCAATTTGTGATGCATTAAACAATATTGAACAAAATTAGTG</gDNA_template>
            <first_frame> K  *  T  E  L  I  I  A  L  S  T  K  K  S  *  K  L  *  S  F  S  L  T  N  T  E  M  A  T  I  T  A  C  T  T  T  S  S  V  A  R  A  A  L  V  Q  R  G  S  V  S  R  T  S  V  V  L   : G  L  P  S  M  S  K  G  G  K  V  K  C  S  M  E  G  K  G  K  G  E  S  K  L  G  M  G  E  S  L  M  A  A  A  V  A  A  S  M  S  S  P  V  A  M  A  L  V  D  E  R  M  S  T  E  G  T  G  L  P  F  G  L  S  N  N  L  L  G  W  I  L  L  G  V  F  G  L  I  W  S  L  Y  T  V  Y  T  S  G  L  D  E  D  E  E  S  G  M  S  L  *  F  L  S  I  I  F  F  L  S  Y  Y  N  Q  T  L  M  N  L  T  T  S  F  D  V  V  S  L  T  L  F  N  *  S  I  V  F  F  L  L  L  F  Q  *  S  F  N  L  *  C  I  K  Q  Y  *  T  K  L  V </first_frame>
            <second_frame>  N  K  L  S  *  *  *  P  Y  Q  Q  K  K  V  R  S  C  D  H  S  L  S  L  I  Q  K  W  Q  P  S  L  L  A  P  Q  L  L  R  W  R  V  P  P  S  C  K  G  D  L  Y  L  A  P  Q  L  F  L  :  D  Y  H  Q  *  A  R  V  E  K  *  N  V  Q  W  K  E  R  E  R  V  N  Q  S  W  E  W  E  N  H  *  W  Q  Q  Q  *  Q  Q  A  C  Q  A  Q  *  Q  W  L  W  L  M  K  E  *  A  L  K  E  Q  G  Y  H  L  D  S  A  T  I  F  L  V  G  S  F  *  V  Y  L  V  *  F  G  L  S  T  L  F  T  L  L  D  L  M  K  M  K  N  L  E  C  L  F  N  F  C  L  L  F  F  F  C  H  T  I  I  K  L  *  *  I  *  L  L  L  L  M  L  Y  L  L  H  S  S  I  E  V  L  Y  F  S  F  S  S  F  N  N  P  S  I  C  D  A  L  N  N  I  E  Q  N  *   </second_frame>
            <third_frame>   I  N  *  V  D  N  S  P  I  N  K  K  K  L  E  V  V  I  I  L  S  H  *  Y  R  N  G  N  H  H  C  L  H  H  N  F  F  G  G  A  C  R  P  R  A  K  G  I  C  I  S  H  L  S  C  S  W :   I  T  I  N  E  Q  G  W  K  S  E  M  F  N  G  R  K  G  K  G  *  I  K  V  G  N  G  R  I  I  D  G  S  S  S  S  S  K  H  V  K  P  S  S  N  G  F  G  *  *  K  N  E  H  *  R  N  R  A  T  I  W  T  Q  Q  Q  S  S  W  L  D  P  F  R  C  I  W  F  D  L  V  S  L  H  C  L  H  F  W  T  *  *  R  *  R  I  W  N  V  S  L  I  F  V  Y  Y  F  F  F  V  I  L  *  S  N  F  N  E  F  N  Y  F  F  *  C  C  I  S  Y  T  L  Q  L  K  Y  C  I  F  P  S  P  L  S  I  I  L  Q  F  V  M  H  *  T  I  L  N  K  I  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0076N09.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24525" stop="24408"/>
                    <exon start="23744" stop="23440"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>420</number_coding_nucleotides>
                  <number_encoded_amino_acids>140</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFSLTNTEMATITACTTTSSVARAALVQRGSVSRTSVVLGLPSMSKGGKVKCSMEGKGKGESKLGMGESLMAAAVAASMSSPVAMALVDERMSTEGTGLPFGLSNNLLGWILLGVFGLIWSLYTVYTSGLDEDEESGMSL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="24575" e_stop="24408"/>
            <exon e_start="23744" e_stop="23334"/>
            <exon e_start="23267" e_stop="23243"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.503" e_score="0.997"/>
          <exon-only e_score="0.640"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="24575" e_stop="24408" e_length="168"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="24407" i_stop="23745" i_length="663"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="23744" e_stop="23334" e_length="411"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.503">
            <gDNA_intron_boundary i_start="23333" i_stop="23268" i_length="66"/>
          </intron>
          <exon e_serial="3" e_score="0.640">
            <gDNA_exon_boundary e_start="23267" e_stop="23243" e_length="25"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24575" stop="24408"/>
              <exon start="23744" stop="23338"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285074" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24566" stop="24408"/>
              <exon start="23744" stop="23389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293036" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24561" stop="24408"/>
              <exon start="23744" stop="23342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612366" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24559" stop="24408"/>
              <exon start="23744" stop="23373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732879" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24558" stop="24408"/>
              <exon start="23744" stop="23452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401876" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24555" stop="24408"/>
              <exon start="23744" stop="23342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572068" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24552" stop="24408"/>
              <exon start="23744" stop="23373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339021" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24551" stop="24408"/>
              <exon start="23744" stop="23362"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740871" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24551" stop="24408"/>
              <exon start="23744" stop="23362"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732499" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24550" stop="24408"/>
              <exon start="23744" stop="23371"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291473" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24549" stop="24408"/>
              <exon start="23744" stop="23343"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24549" stop="24408"/>
              <exon start="23744" stop="23354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322912" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24549" stop="24408"/>
              <exon start="23744" stop="23355"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322821" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24549" stop="24408"/>
              <exon start="23744" stop="23362"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738777" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24548" stop="24408"/>
              <exon start="23744" stop="23373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735284" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24547" stop="24408"/>
              <exon start="23744" stop="23343"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612654" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24547" stop="24408"/>
              <exon start="23744" stop="23345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E611584" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24547" stop="24408"/>
              <exon start="23744" stop="23366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289671" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24547" stop="24408"/>
              <exon start="23744" stop="23366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732424" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24547" stop="24408"/>
              <exon start="23744" stop="23382"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296937" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24547" stop="24408"/>
              <exon start="23744" stop="23408"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292912" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24547" stop="24408"/>
              <exon start="23744" stop="23552"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475421" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24547" stop="24408"/>
              <exon start="23744" stop="23659"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295765" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24545" stop="24408"/>
              <exon start="23744" stop="23343"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696691" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24544" stop="24408"/>
              <exon start="23744" stop="23334"/>
              <exon start="23267" stop="23243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367227" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24544" stop="24408"/>
              <exon start="23744" stop="23373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732139" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24544" stop="24408"/>
              <exon start="23744" stop="23374"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296751" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24543" stop="24408"/>
              <exon start="23744" stop="23366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24543" stop="24408"/>
              <exon start="23744" stop="23370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294106" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24543" stop="24408"/>
              <exon start="23744" stop="23373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734908" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24543" stop="24408"/>
              <exon start="23744" stop="23373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734503" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24543" stop="24408"/>
              <exon start="23744" stop="23373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24543" stop="24408"/>
              <exon start="23744" stop="23374"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282593" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24543" stop="24408"/>
              <exon start="23744" stop="23381"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295008" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24543" stop="24408"/>
              <exon start="23744" stop="23382"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297873" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24542" stop="24408"/>
              <exon start="23744" stop="23344"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612031" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24542" stop="24408"/>
              <exon start="23744" stop="23347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296656" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24542" stop="24408"/>
              <exon start="23744" stop="23356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290264" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24542" stop="24408"/>
              <exon start="23744" stop="23362"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24542" stop="24408"/>
              <exon start="23744" stop="23456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232747" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24542" stop="24408"/>
              <exon start="23744" stop="23574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297515" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24541" stop="24408"/>
              <exon start="23744" stop="23349"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261201" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24541" stop="24408"/>
              <exon start="23744" stop="23350"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282871" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24541" stop="24408"/>
              <exon start="23744" stop="23366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283320" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24541" stop="24408"/>
              <exon start="23744" stop="23380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282397" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24541" stop="24408"/>
              <exon start="23744" stop="23393"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291418" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24541" stop="24408"/>
              <exon start="23744" stop="23462"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292047" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24540" stop="24408"/>
              <exon start="23744" stop="23371"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282506" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24540" stop="24408"/>
              <exon start="23744" stop="23533"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296902" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24534" stop="24408"/>
              <exon start="23744" stop="23470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296835" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24532" stop="24408"/>
              <exon start="23744" stop="23355"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735055" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24528" stop="24408"/>
              <exon start="23744" stop="23373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737101" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24528" stop="24408"/>
              <exon start="23744" stop="23373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735631" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24528" stop="24408"/>
              <exon start="23744" stop="23373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735846" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24528" stop="24408"/>
              <exon start="23744" stop="23373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739637" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24528" stop="24408"/>
              <exon start="23744" stop="23397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712975" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24527" stop="24408"/>
              <exon start="23744" stop="23581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291247" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24526" stop="24408"/>
              <exon start="23744" stop="23355"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24524" stop="24408"/>
              <exon start="23744" stop="23628"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472902" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24521" stop="24408"/>
              <exon start="23744" stop="23350"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24519" stop="24408"/>
              <exon start="23744" stop="23366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286735" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24515" stop="24408"/>
              <exon start="23744" stop="23343"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347443" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24483" stop="24408"/>
              <exon start="23744" stop="23348"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724660" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24475" stop="24408"/>
              <exon start="23744" stop="23356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298499" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24472" stop="24408"/>
              <exon start="23744" stop="23441"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281193" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23684" stop="23489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391204" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23601" stop="23355"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292770" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAACTGAGTTGATAATAGCCCTATCAACAAAAAAAAGTTAGAAGTTGTGATCATTCTCTCTCACTAATACAGAAATGGCAACCATCACTGCTTGCACCACAACTTCTTCGGTGGCGCGTGCCGCCCTCGTGCAAAGGGGATCTGTATCTCGCACCTCAGTTGTTCTTG : GATTACCATCAATGAGCAAGGGTGGAAAAGTGAAATGTTCAATGGAAGGAAAGGGAAAGGGTGAATCAAAGTTGGGAATGGGAGAATCATTGATGGCAGCAGCAGTAGCAGCAAGCATGTCAAGCCCAGTAGCAATGGCTTTGGTTGATGAAAGAATGAGCACTGAAGGAACAGGGCTACCATTTGGACTCAGCAACAATCTTCTTGGTTGGATCCTTTTAGGTGTATTTGGTTTGATTTGGTCTCTCTACACTGTTTACACTTCTGGACTTGATGAAGATGAAGAATCTGGAATGTCTCTTTAATTTTTGTCTATTATTTTTTTTTTGTCATACTATAATCAAACTTTAATGAATTTAACTACTTCTTTTGATGTTGTATCTCTTACACTCTTCAATTGAAGTATTGTAT : TGATTTTTAGAAAGGGAAGAAAGAA</gDNA_template>
            <first_frame> K  L  S  *  *  *  P  Y  Q  Q  K  K  V  R  S  C  D  H  S  L  S  L  I  Q  K  W  Q  P  S  L  L  A  P  Q  L  L  R  W  R  V  P  P  S  C  K  G  D  L  Y  L  A  P  Q  L  F  L  :  D  Y  H  Q  *  A  R  V  E  K  *  N  V  Q  W  K  E  R  E  R  V  N  Q  S  W  E  W  E  N  H  *  W  Q  Q  Q  *  Q  Q  A  C  Q  A  Q  *  Q  W  L  W  L  M  K  E  *  A  L  K  E  Q  G  Y  H  L  D  S  A  T  I  F  L  V  G  S  F  *  V  Y  L  V  *  F  G  L  S  T  L  F  T  L  L  D  L  M  K  M  K  N  L  E  C  L  F  N  F  C  L  L  F  F  F  C  H  T  I  I  K  L  *  *  I  *  L  L  L  L  M  L  Y  L  L  H  S  S  I  E  V  L  Y  :  *  F  L  E  R  E  E  R  </first_frame>
            <second_frame>  N  *  V  D  N  S  P  I  N  K  K  K  L  E  V  V  I  I  L  S  H  *  Y  R  N  G  N  H  H  C  L  H  H  N  F  F  G  G  A  C  R  P  R  A  K  G  I  C  I  S  H  L  S  C  S  W :   I  T  I  N  E  Q  G  W  K  S  E  M  F  N  G  R  K  G  K  G  *  I  K  V  G  N  G  R  I  I  D  G  S  S  S  S  S  K  H  V  K  P  S  S  N  G  F  G  *  *  K  N  E  H  *  R  N  R  A  T  I  W  T  Q  Q  Q  S  S  W  L  D  P  F  R  C  I  W  F  D  L  V  S  L  H  C  L  H  F  W  T  *  *  R  *  R  I  W  N  V  S  L  I  F  V  Y  Y  F  F  F  V  I  L  *  S  N  F  N  E  F  N  Y  F  F  *  C  C  I  S  Y  T  L  Q  L  K  Y  C  I :   D  F  *  K  G  K  K  E </second_frame>
            <third_frame>   T  E  L  I  I  A  L  S  T  K  K  S  *  K  L  *  S  F  S  L  T  N  T  E  M  A  T  I  T  A  C  T  T  T  S  S  V  A  R  A  A  L  V  Q  R  G  S  V  S  R  T  S  V  V  L   : G  L  P  S  M  S  K  G  G  K  V  K  C  S  M  E  G  K  G  K  G  E  S  K  L  G  M  G  E  S  L  M  A  A  A  V  A  A  S  M  S  S  P  V  A  M  A  L  V  D  E  R  M  S  T  E  G  T  G  L  P  F  G  L  S  N  N  L  L  G  W  I  L  L  G  V  F  G  L  I  W  S  L  Y  T  V  Y  T  S  G  L  D  E  D  E  E  S  G  M  S  L  *  F  L  S  I  I  F  F  L  S  Y  Y  N  Q  T  L  M  N  L  T  T  S  F  D  V  V  S  L  T  L  F  N  *  S  I  V   : L  I  F  R  K  G  R  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0076N09.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24525" stop="24408"/>
                    <exon start="23744" stop="23440"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>420</number_coding_nucleotides>
                  <number_encoded_amino_acids>140</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFSLTNTEMATITACTTTSSVARAALVQRGSVSRTSVVLGLPSMSKGGKVKCSMEGKGKGESKLGMGESLMAAAVAASMSSPVAMALVDERMSTEGTGLPFGLSNNLLGWILLGVFGLIWSLYTVYTSGLDEDEESGMSL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="29289" PGL_stop="34912"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30961" e_stop="31082"/>
            <exon e_start="31166" e_stop="31368"/>
            <exon e_start="31469" e_stop="31498"/>
            <exon e_start="31606" e_stop="31725"/>
            <exon e_start="32269" e_stop="32587"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.643" e_score="1.000"/>
          <exon-intron don_prob="0.935" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="30961" e_stop="31082" e_length="122"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.998">
            <gDNA_intron_boundary i_start="31083" i_stop="31165" i_length="83"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="31166" e_stop="31368" e_length="203"/>
          </exon>
          <intron i_serial="2" don_prob="0.974" acc_prob="0.978">
            <gDNA_intron_boundary i_start="31369" i_stop="31468" i_length="100"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="31469" e_stop="31498" e_length="30"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.643">
            <gDNA_intron_boundary i_start="31499" i_stop="31605" i_length="107"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="31606" e_stop="31725" e_length="120"/>
          </exon>
          <intron i_serial="4" don_prob="0.935" acc_prob="0.997">
            <gDNA_intron_boundary i_start="31726" i_stop="32268" i_length="543"/>
          </intron>
          <exon e_serial="5" e_score="0.987">
            <gDNA_exon_boundary e_start="32269" e_stop="32587" e_length="319"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30961" stop="31082"/>
              <exon start="31166" stop="31368"/>
              <exon start="31469" stop="31498"/>
              <exon start="31606" stop="31725"/>
              <exon start="32269" stop="32450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392799" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30962" stop="31082"/>
              <exon start="31166" stop="31368"/>
              <exon start="31469" stop="31498"/>
              <exon start="31606" stop="31725"/>
              <exon start="32269" stop="32328"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241511" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30962" stop="31082"/>
              <exon start="31166" stop="31368"/>
              <exon start="31469" stop="31498"/>
              <exon start="31606" stop="31682"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242801" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31056" stop="31082"/>
              <exon start="31166" stop="31368"/>
              <exon start="31469" stop="31498"/>
              <exon start="31606" stop="31725"/>
              <exon start="32269" stop="32587"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392892" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGCACCTTACTGGTCTCCTGATACGTTCTCAATACGCTCAAAGCTATTATCCAAAGCAAGCAGGATCAGTGGGATAACTCATGAGGAGACTGATGTTGAGGAACTTGAAATGTTGCTTGAG : GCGTACTTTGTGCAAATTGAAAGCACGATGAACAAATTGACAACGGTAAGACAATGAAAAAAACAGGAACCTGGTGCCCTTTACATAGCCAAAATGAAATAATGAACTGATCATTGATAACTCTAATTACATAGTGATACTCGTGTTCCTTTATCCAGCTGCGCGAATATATTGATGACACTGAGGACTATATCAATATTCAG : CTGGACAATCATCGAAATCAGCTGATCCAG : TTGGAGCTGTTCCTGAGTTCTGGTACAGTTTGTTTGACAGTGTACTCCTTGGTGGCTGCAATATTTGGAATGAATATTCCAGTTCCATGGAAGAAAGACCATGGCTACCTTTTTAAATGG : GTGGTCATTCTTTCTGGAATTGCTTCTGCATCCGTTTTCCTATCAATAATTGCATATGCTAGGCACAAGGGTCTTGTTGGATCTTAAATCTTAATACCTATTACTCCTCCGATCTCTATATATAAATATAAAATACACCAGACATGTCAACATGTTGAAATTTAATTTCTAAATTGTAACTTTTAGAGGACGAGGCAGAGCCATGATTGGAGATAAGATATGCAAAAATGTTACGATACGAATTTATGACCTAAAACATGCTTGTTATGTATTGATGAATTCAACAATCAATATATATATATATATATATATATAAAAT</gDNA_template>
            <first_frame> W  H  L  T  G  L  L  I  R  S  Q  Y  A  Q  S  Y  Y  P  K  Q  A  G  S  V  G  *  L  M  R  R  L  M  L  R  N  L  K  C  C  L  R :   R  T  L  C  K  L  K  A  R  *  T  N  *  Q  R  *  D  N  E  K  N  R  N  L  V  P  F  T  *  P  K  *  N  N  E  L  I  I  D  N  S  N  Y  I  V  I  L  V  F  L  Y  P  A  A  R  I  Y  *  *  H  *  G  L  Y  Q  Y  S   : A  G  Q  S  S  K  S  A  D  P   : V  G  A  V  P  E  F  W  Y  S  L  F  D  S  V  L  L  G  G  C  N  I  W  N  E  Y  S  S  S  M  E  E  R  P  W  L  P  F  *  M   : G  G  H  S  F  W  N  C  F  C  I  R  F  P  I  N  N  C  I  C  *  A  Q  G  S  C  W  I  L  N  L  N  T  Y  Y  S  S  D  L  Y  I  *  I  *  N  T  P  D  M  S  T  C  *  N  L  I  S  K  L  *  L  L  E  D  E  A  E  P  *  L  E  I  R  Y  A  K  M  L  R  Y  E  F  M  T  *  N  M  L  V  M  Y  *  *  I  Q  Q  S  I  Y  I  Y  I  Y  I  Y  K   </first_frame>
            <second_frame>  G  T  L  L  V  S  *  Y  V  L  N  T  L  K  A  I  I  Q  S  K  Q  D  Q  W  D  N  S  *  G  D  *  C  *  G  T  *  N  V  A  *   : G  V  L  C  A  N  *  K  H  D  E  Q  I  D  N  G  K  T  M  K  K  T  G  T  W  C  P  L  H  S  Q  N  E  I  M  N  *  S  L  I  T  L  I  T  *  *  Y  S  C  S  F  I  Q  L  R  E  Y  I  D  D  T  E  D  Y  I  N  I  Q  :  L  D  N  H  R  N  Q  L  I  Q  :  L  E  L  F  L  S  S  G  T  V  C  L  T  V  Y  S  L  V  A  A  I  F  G  M  N  I  P  V  P  W  K  K  D  H  G  Y  L  F  K  W  :  V  V  I  L  S  G  I  A  S  A  S  V  F  L  S  I  I  A  Y  A  R  H  K  G  L  V  G  S  *  I  L  I  P  I  T  P  P  I  S  I  Y  K  Y  K  I  H  Q  T  C  Q  H  V  E  I  *  F  L  N  C  N  F  *  R  T  R  Q  S  H  D  W  R  *  D  M  Q  K  C  Y  D  T  N  L  *  P  K  T  C  L  L  C  I  D  E  F  N  N  Q  Y  I  Y  I  Y  I  Y  I  K  </second_frame>
            <third_frame>   A  P  Y  W  S  P  D  T  F  S  I  R  S  K  L  L  S  K  A  S  R  I  S  G  I  T  H  E  E  T  D  V  E  E  L  E  M  L  L  E  :  A  Y  F  V  Q  I  E  S  T  M  N  K  L  T  T  V  R  Q  *  K  K  Q  E  P  G  A  L  Y  I  A  K  M  K  *  *  T  D  H  *  *  L  *  L  H  S  D  T  R  V  P  L  S  S  C  A  N  I  L  M  T  L  R  T  I  S  I  F  S :   W  T  I  I  E  I  S  *  S  S :   W  S  C  S  *  V  L  V  Q  F  V  *  Q  C  T  P  W  W  L  Q  Y  L  E  *  I  F  Q  F  H  G  R  K  T  M  A  T  F  L  N  G :   W  S  F  F  L  E  L  L  L  H  P  F  S  Y  Q  *  L  H  M  L  G  T  R  V  L  L  D  L  K  S  *  Y  L  L  L  L  R  S  L  Y  I  N  I  K  Y  T  R  H  V  N  M  L  K  F  N  F  *  I  V  T  F  R  G  R  G  R  A  M  I  G  D  K  I  C  K  N  V  T  I  R  I  Y  D  L  K  H  A  C  Y  V  L  M  N  S  T  I  N  I  Y  I  Y  I  Y  I  *  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0076N09.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31303" stop="31368"/>
                    <exon start="31469" stop="31498"/>
                    <exon start="31606" stop="31725"/>
                    <exon start="32269" stop="32355"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>300</number_coding_nucleotides>
                  <number_encoded_amino_acids>100</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YSCSFIQLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCLTVYSLVAAIFGMNIPVPWKKDHGYLFKWVVILSGIASASVFLSIIAYARHKGLVGS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="29289" e_stop="29422"/>
            <exon e_start="29532" e_stop="29653"/>
            <exon e_start="30611" e_stop="30685"/>
            <exon e_start="30855" e_stop="31082"/>
            <exon e_start="31166" e_stop="31210"/>
            <exon e_start="31324" e_stop="31368"/>
            <exon e_start="31469" e_stop="31498"/>
            <exon e_start="31606" e_stop="31725"/>
            <exon e_start="32269" e_stop="32497"/>
            <exon e_start="34728" e_stop="34765"/>
            <exon e_start="34884" e_stop="34912"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.892" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.591" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.643" e_score="1.000"/>
          <exon-intron don_prob="0.935" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.592" acc_prob="0.000" e_score="0.904"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.737"/>
          <exon-only e_score="0.724"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="29289" e_stop="29422" e_length="134"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.892">
            <gDNA_intron_boundary i_start="29423" i_stop="29531" i_length="109"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="29532" e_stop="29653" e_length="122"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="29654" i_stop="30610" i_length="957"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="30611" e_stop="30685" e_length="75"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="30686" i_stop="30854" i_length="169"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="30855" e_stop="31082" e_length="228"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.998">
            <gDNA_intron_boundary i_start="31083" i_stop="31165" i_length="83"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="31166" e_stop="31210" e_length="45"/>
          </exon>
          <intron i_serial="5" don_prob="0.591" acc_prob="0.973">
            <gDNA_intron_boundary i_start="31211" i_stop="31323" i_length="113"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="31324" e_stop="31368" e_length="45"/>
          </exon>
          <intron i_serial="6" don_prob="0.974" acc_prob="0.978">
            <gDNA_intron_boundary i_start="31369" i_stop="31468" i_length="100"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="31469" e_stop="31498" e_length="30"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.643">
            <gDNA_intron_boundary i_start="31499" i_stop="31605" i_length="107"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="31606" e_stop="31725" e_length="120"/>
          </exon>
          <intron i_serial="8" don_prob="0.935" acc_prob="0.997">
            <gDNA_intron_boundary i_start="31726" i_stop="32268" i_length="543"/>
          </intron>
          <exon e_serial="9" e_score="0.904">
            <gDNA_exon_boundary e_start="32269" e_stop="32497" e_length="229"/>
          </exon>
          <intron i_serial="9" don_prob="0.592" acc_prob="0.000">
            <gDNA_intron_boundary i_start="32498" i_stop="34727" i_length="2230"/>
          </intron>
          <exon e_serial="10" e_score="0.737">
            <gDNA_exon_boundary e_start="34728" e_stop="34765" e_length="38"/>
          </exon>
          <intron i_serial="10" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="34766" i_stop="34883" i_length="118"/>
          </intron>
          <exon e_serial="11" e_score="0.724">
            <gDNA_exon_boundary e_start="34884" e_stop="34912" e_length="29"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29289" stop="29422"/>
              <exon start="29532" stop="29653"/>
              <exon start="30611" stop="30685"/>
              <exon start="30855" stop="31082"/>
              <exon start="31166" stop="31210"/>
              <exon start="31324" stop="31368"/>
              <exon start="31469" stop="31498"/>
              <exon start="31606" stop="31649"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369430" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29289" stop="29422"/>
              <exon start="29532" stop="29653"/>
              <exon start="30611" stop="30685"/>
              <exon start="30855" stop="31082"/>
              <exon start="31166" stop="31210"/>
              <exon start="31324" stop="31347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246204" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31188" stop="31210"/>
              <exon start="31324" stop="31368"/>
              <exon start="31469" stop="31498"/>
              <exon start="31606" stop="31725"/>
              <exon start="32269" stop="32497"/>
              <exon start="34728" stop="34765"/>
              <exon start="34884" stop="34912"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E621689" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAATGTTCTTCCTGTTGTTGAAGAACTTCAAAGAAGATTGCCATTGCCAGCTATTAGCTTAGGAGAAGGTGAAGATGATGATCAATCTGTTGTTAATGGGACACGAAATGAAATGCAAACCATTGAACCAACTG : AGTTTCCTTTTGAATTTCGAGCTTTAGAAGTAGCACTAGAAGGAGTATGCAGTTATCTTGACACTCAGACACGAGAACTAGAGACTGCTGCTTACCCGGCTTTAGATGAGCTCACCTCAAAG : ATTAGTAGTCGCAACCTGGATAGAGTGCGCAAATTGAAGAGTGCAATGACTAGGTTGACTAGTCGGGTTCAAAAA : GTAAGGGATGATCTTGAACAACTACTCGAAGATGATGGTGACATGGCTGACCTTTATCTCTCAAGAAAATTAGTTGCCGGAGTTTCATCCCCCCTGAGTGGTCAGGTGGCACCTTACTGGTCTCCTGATACGTTCTCAATACGCTCAAAGCTATTATCCAAAGCAAGCAGGATCAGTGGGATAACTCATGAGGAGACTGATGTTGAGGAACTTGAAATGTTGCTTGAG : GCGTACTTTGTGCAAATTGAAAGCACGATGAACAAATTGACAACG : CTGCGCGAATATATTGATGACACTGAGGACTATATCAATATTCAG : CTGGACAATCATCGAAATCAGCTGATCCAG : TTGGAGCTGTTCCTGAGTTCTGGTACAGTTTGTTTGACAGTGTACTCCTTGGTGGCTGCAATATTTGGAATGAATATTCCAGTTCCATGGAAGAAAGACCATGGCTACCTTTTTAAATGG : GTGGTCATTCTTTCTGGAATTGCTTCTGCATCCGTTTTCCTATCAATAATTGCATATGCTAGGCACAAGGGTCTTGTTGGATCTTAAATCTTAATACCTATTACTCCTCCGATCTCTATATATAAATATAAAATACACCAGACATGTCAACATGTTGAAATTTAATTTCTAAATTGTAACTTTTAGAGGACGAGGCAGAGCCATGATTGGAGATAAGATATGCAAAAAT : AAAAATATTAACAAACAAATTAAAAATAAAAGATAAAA : AAAAAAAAATTATGAAAACAAAAGATAAA</gDNA_template>
            <first_frame> *  C  S  S  C  C  *  R  T  S  K  K  I  A  I  A  S  Y  *  L  R  R  R  *  R  *  *  S  I  C  C  *  W  D  T  K  *  N  A  N  H  *  T  N  * :   V  S  F  *  I  S  S  F  R  S  S  T  R  R  S  M  Q  L  S  *  H  S  D  T  R  T  R  D  C  C  L  P  G  F  R  *  A  H  L  K   : D  *  *  S  Q  P  G  *  S  A  Q  I  E  E  C  N  D  *  V  D  *  S  G  S  K   : S  K  G  *  S  *  T  T  T  R  R  *  W  *  H  G  *  P  L  S  L  K  K  I  S  C  R  S  F  I  P  P  E  W  S  G  G  T  L  L  V  S  *  Y  V  L  N  T  L  K  A  I  I  Q  S  K  Q  D  Q  W  D  N  S  *  G  D  *  C  *  G  T  *  N  V  A  *   : G  V  L  C  A  N  *  K  H  D  E  Q  I  D  N   : A  A  R  I  Y  *  *  H  *  G  L  Y  Q  Y  S   : A  G  Q  S  S  K  S  A  D  P   : V  G  A  V  P  E  F  W  Y  S  L  F  D  S  V  L  L  G  G  C  N  I  W  N  E  Y  S  S  S  M  E  E  R  P  W  L  P  F  *  M   : G  G  H  S  F  W  N  C  F  C  I  R  F  P  I  N  N  C  I  C  *  A  Q  G  S  C  W  I  L  N  L  N  T  Y  Y  S  S  D  L  Y  I  *  I  *  N  T  P  D  M  S  T  C  *  N  L  I  S  K  L  *  L  L  E  D  E  A  E  P  *  L  E  I  R  Y  A  K  I :   K  I  L  T  N  K  L  K  I  K  D  K   : K  K  K  I  M  K  T  K  D  K </first_frame>
            <second_frame>  N  V  L  P  V  V  E  E  L  Q  R  R  L  P  L  P  A  I  S  L  G  E  G  E  D  D  D  Q  S  V  V  N  G  T  R  N  E  M  Q  T  I  E  P  T   : E  F  P  F  E  F  R  A  L  E  V  A  L  E  G  V  C  S  Y  L  D  T  Q  T  R  E  L  E  T  A  A  Y  P  A  L  D  E  L  T  S  K  :  I  S  S  R  N  L  D  R  V  R  K  L  K  S  A  M  T  R  L  T  S  R  V  Q  K  :  V  R  D  D  L  E  Q  L  L  E  D  D  G  D  M  A  D  L  Y  L  S  R  K  L  V  A  G  V  S  S  P  L  S  G  Q  V  A  P  Y  W  S  P  D  T  F  S  I  R  S  K  L  L  S  K  A  S  R  I  S  G  I  T  H  E  E  T  D  V  E  E  L  E  M  L  L  E  :  A  Y  F  V  Q  I  E  S  T  M  N  K  L  T  T  :  L  R  E  Y  I  D  D  T  E  D  Y  I  N  I  Q  :  L  D  N  H  R  N  Q  L  I  Q  :  L  E  L  F  L  S  S  G  T  V  C  L  T  V  Y  S  L  V  A  A  I  F  G  M  N  I  P  V  P  W  K  K  D  H  G  Y  L  F  K  W  :  V  V  I  L  S  G  I  A  S  A  S  V  F  L  S  I  I  A  Y  A  R  H  K  G  L  V  G  S  *  I  L  I  P  I  T  P  P  I  S  I  Y  K  Y  K  I  H  Q  T  C  Q  H  V  E  I  *  F  L  N  C  N  F  *  R  T  R  Q  S  H  D  W  R  *  D  M  Q  K   : *  K  Y  *  Q  T  N  *  K  *  K  I  K  :  K  K  K  L  *  K  Q  K  I   </second_frame>
            <third_frame>   M  F  F  L  L  L  K  N  F  K  E  D  C  H  C  Q  L  L  A  *  E  K  V  K  M  M  I  N  L  L  L  M  G  H  E  M  K  C  K  P  L  N  Q  L  :  S  F  L  L  N  F  E  L  *  K  *  H  *  K  E  Y  A  V  I  L  T  L  R  H  E  N  *  R  L  L  L  T  R  L  *  M  S  S  P  Q  R :   L  V  V  A  T  W  I  E  C  A  N  *  R  V  Q  *  L  G  *  L  V  G  F  K  K :   *  G  M  I  L  N  N  Y  S  K  M  M  V  T  W  L  T  F  I  S  Q  E  N  *  L  P  E  F  H  P  P  *  V  V  R  W  H  L  T  G  L  L  I  R  S  Q  Y  A  Q  S  Y  Y  P  K  Q  A  G  S  V  G  *  L  M  R  R  L  M  L  R  N  L  K  C  C  L  R :   R  T  L  C  K  L  K  A  R  *  T  N  *  Q  R :   C  A  N  I  L  M  T  L  R  T  I  S  I  F  S :   W  T  I  I  E  I  S  *  S  S :   W  S  C  S  *  V  L  V  Q  F  V  *  Q  C  T  P  W  W  L  Q  Y  L  E  *  I  F  Q  F  H  G  R  K  T  M  A  T  F  L  N  G :   W  S  F  F  L  E  L  L  L  H  P  F  S  Y  Q  *  L  H  M  L  G  T  R  V  L  L  D  L  K  S  *  Y  L  L  L  L  R  S  L  Y  I  N  I  K  Y  T  R  H  V  N  M  L  K  F  N  F  *  I  V  T  F  R  G  R  G  R  A  M  I  G  D  K  I  C  K  N  :  K  N  I  N  K  Q  I  K  N  K  R  *  K :   K  K  N  Y  E  N  K  R  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0076N09.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29290" stop="29422"/>
                    <exon start="29532" stop="29653"/>
                    <exon start="30611" stop="30685"/>
                    <exon start="30855" stop="31082"/>
                    <exon start="31166" stop="31210"/>
                    <exon start="31324" stop="31368"/>
                    <exon start="31469" stop="31498"/>
                    <exon start="31606" stop="31725"/>
                    <exon start="32269" stop="32355"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>882</number_coding_nucleotides>
                  <number_encoded_amino_acids>294</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NVLPVVEELQRRLPLPAISLGEGEDDDQSVVNGTRNEMQTIEPTEFPFEFRALEVALEGVCSYLDTQTRELETAAYPALDELTSKISSRNLDRVRKLKSAMTRLTSRVQKVRDDLEQLLEDDGDMADLYLSRKLVAGVSSPLSGQVAPYWSPDTFSIRSKLLSKASRISGITHEETDVEELEMLLEAYFVQIESTMNKLTTLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCLTVYSLVAAIFGMNIPVPWKKDHGYLFKWVVILSGIASASVFLSIIAYARHKGLVGS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="29289" e_stop="29422"/>
            <exon e_start="29532" e_stop="29653"/>
            <exon e_start="30611" e_stop="30685"/>
            <exon e_start="30855" e_stop="31082"/>
            <exon e_start="31166" e_stop="31210"/>
            <exon e_start="31324" e_stop="31368"/>
            <exon e_start="31469" e_stop="31498"/>
            <exon e_start="31606" e_stop="31725"/>
            <exon e_start="32269" e_stop="32611"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.892" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.591" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.643" e_score="1.000"/>
          <exon-intron don_prob="0.935" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.968"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="29289" e_stop="29422" e_length="134"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.892">
            <gDNA_intron_boundary i_start="29423" i_stop="29531" i_length="109"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="29532" e_stop="29653" e_length="122"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="29654" i_stop="30610" i_length="957"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="30611" e_stop="30685" e_length="75"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="30686" i_stop="30854" i_length="169"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="30855" e_stop="31082" e_length="228"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.998">
            <gDNA_intron_boundary i_start="31083" i_stop="31165" i_length="83"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="31166" e_stop="31210" e_length="45"/>
          </exon>
          <intron i_serial="5" don_prob="0.591" acc_prob="0.973">
            <gDNA_intron_boundary i_start="31211" i_stop="31323" i_length="113"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="31324" e_stop="31368" e_length="45"/>
          </exon>
          <intron i_serial="6" don_prob="0.974" acc_prob="0.978">
            <gDNA_intron_boundary i_start="31369" i_stop="31468" i_length="100"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="31469" e_stop="31498" e_length="30"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.643">
            <gDNA_intron_boundary i_start="31499" i_stop="31605" i_length="107"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="31606" e_stop="31725" e_length="120"/>
          </exon>
          <intron i_serial="8" don_prob="0.935" acc_prob="0.997">
            <gDNA_intron_boundary i_start="31726" i_stop="32268" i_length="543"/>
          </intron>
          <exon e_serial="9" e_score="0.968">
            <gDNA_exon_boundary e_start="32269" e_stop="32611" e_length="343"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29289" stop="29422"/>
              <exon start="29532" stop="29653"/>
              <exon start="30611" stop="30685"/>
              <exon start="30855" stop="31082"/>
              <exon start="31166" stop="31210"/>
              <exon start="31324" stop="31368"/>
              <exon start="31469" stop="31498"/>
              <exon start="31606" stop="31649"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369430" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29289" stop="29422"/>
              <exon start="29532" stop="29653"/>
              <exon start="30611" stop="30685"/>
              <exon start="30855" stop="31082"/>
              <exon start="31166" stop="31210"/>
              <exon start="31324" stop="31347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246204" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30994" stop="31082"/>
              <exon start="31166" stop="31210"/>
              <exon start="31324" stop="31368"/>
              <exon start="31469" stop="31498"/>
              <exon start="31606" stop="31725"/>
              <exon start="32269" stop="32611"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369429" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAATGTTCTTCCTGTTGTTGAAGAACTTCAAAGAAGATTGCCATTGCCAGCTATTAGCTTAGGAGAAGGTGAAGATGATGATCAATCTGTTGTTAATGGGACACGAAATGAAATGCAAACCATTGAACCAACTG : AGTTTCCTTTTGAATTTCGAGCTTTAGAAGTAGCACTAGAAGGAGTATGCAGTTATCTTGACACTCAGACACGAGAACTAGAGACTGCTGCTTACCCGGCTTTAGATGAGCTCACCTCAAAG : ATTAGTAGTCGCAACCTGGATAGAGTGCGCAAATTGAAGAGTGCAATGACTAGGTTGACTAGTCGGGTTCAAAAA : GTAAGGGATGATCTTGAACAACTACTCGAAGATGATGGTGACATGGCTGACCTTTATCTCTCAAGAAAATTAGTTGCCGGAGTTTCATCCCCCCTGAGTGGTCAGGTGGCACCTTACTGGTCTCCTGATACGTTCTCAATACGCTCAAAGCTATTATCCAAAGCAAGCAGGATCAGTGGGATAACTCATGAGGAGACTGATGTTGAGGAACTTGAAATGTTGCTTGAG : GCGTACTTTGTGCAAATTGAAAGCACGATGAACAAATTGACAACG : CTGCGCGAATATATTGATGACACTGAGGACTATATCAATATTCAG : CTGGACAATCATCGAAATCAGCTGATCCAG : TTGGAGCTGTTCCTGAGTTCTGGTACAGTTTGTTTGACAGTGTACTCCTTGGTGGCTGCAATATTTGGAATGAATATTCCAGTTCCATGGAAGAAAGACCATGGCTACCTTTTTAAATGG : GTGGTCATTCTTTCTGGAATTGCTTCTGCATCCGTTTTCCTATCAATAATTGCATATGCTAGGCACAAGGGTCTTGTTGGATCTTAAATCTTAATACCTATTACTCCTCCGATCTCTATATATAAATATAAAATACACCAGACATGTCAACATGTTGAAATTTAATTTCTAAATTGTAACTTTTAGAGGACGAGGCAGAGCCATGATTGGAGATAAGATATGCAAAAATGTTACGATACGAATTTATGACCTAAAACATGCTTGTTATGTATTGATGAATTCAACAATCAATATATATATATATATATATATATAAAATCTCACATACGCACAAATGTAATTT</gDNA_template>
            <first_frame> *  C  S  S  C  C  *  R  T  S  K  K  I  A  I  A  S  Y  *  L  R  R  R  *  R  *  *  S  I  C  C  *  W  D  T  K  *  N  A  N  H  *  T  N  * :   V  S  F  *  I  S  S  F  R  S  S  T  R  R  S  M  Q  L  S  *  H  S  D  T  R  T  R  D  C  C  L  P  G  F  R  *  A  H  L  K   : D  *  *  S  Q  P  G  *  S  A  Q  I  E  E  C  N  D  *  V  D  *  S  G  S  K   : S  K  G  *  S  *  T  T  T  R  R  *  W  *  H  G  *  P  L  S  L  K  K  I  S  C  R  S  F  I  P  P  E  W  S  G  G  T  L  L  V  S  *  Y  V  L  N  T  L  K  A  I  I  Q  S  K  Q  D  Q  W  D  N  S  *  G  D  *  C  *  G  T  *  N  V  A  *   : G  V  L  C  A  N  *  K  H  D  E  Q  I  D  N   : A  A  R  I  Y  *  *  H  *  G  L  Y  Q  Y  S   : A  G  Q  S  S  K  S  A  D  P   : V  G  A  V  P  E  F  W  Y  S  L  F  D  S  V  L  L  G  G  C  N  I  W  N  E  Y  S  S  S  M  E  E  R  P  W  L  P  F  *  M   : G  G  H  S  F  W  N  C  F  C  I  R  F  P  I  N  N  C  I  C  *  A  Q  G  S  C  W  I  L  N  L  N  T  Y  Y  S  S  D  L  Y  I  *  I  *  N  T  P  D  M  S  T  C  *  N  L  I  S  K  L  *  L  L  E  D  E  A  E  P  *  L  E  I  R  Y  A  K  M  L  R  Y  E  F  M  T  *  N  M  L  V  M  Y  *  *  I  Q  Q  S  I  Y  I  Y  I  Y  I  Y  K  I  S  H  T  H  K  C  N   </first_frame>
            <second_frame>  N  V  L  P  V  V  E  E  L  Q  R  R  L  P  L  P  A  I  S  L  G  E  G  E  D  D  D  Q  S  V  V  N  G  T  R  N  E  M  Q  T  I  E  P  T   : E  F  P  F  E  F  R  A  L  E  V  A  L  E  G  V  C  S  Y  L  D  T  Q  T  R  E  L  E  T  A  A  Y  P  A  L  D  E  L  T  S  K  :  I  S  S  R  N  L  D  R  V  R  K  L  K  S  A  M  T  R  L  T  S  R  V  Q  K  :  V  R  D  D  L  E  Q  L  L  E  D  D  G  D  M  A  D  L  Y  L  S  R  K  L  V  A  G  V  S  S  P  L  S  G  Q  V  A  P  Y  W  S  P  D  T  F  S  I  R  S  K  L  L  S  K  A  S  R  I  S  G  I  T  H  E  E  T  D  V  E  E  L  E  M  L  L  E  :  A  Y  F  V  Q  I  E  S  T  M  N  K  L  T  T  :  L  R  E  Y  I  D  D  T  E  D  Y  I  N  I  Q  :  L  D  N  H  R  N  Q  L  I  Q  :  L  E  L  F  L  S  S  G  T  V  C  L  T  V  Y  S  L  V  A  A  I  F  G  M  N  I  P  V  P  W  K  K  D  H  G  Y  L  F  K  W  :  V  V  I  L  S  G  I  A  S  A  S  V  F  L  S  I  I  A  Y  A  R  H  K  G  L  V  G  S  *  I  L  I  P  I  T  P  P  I  S  I  Y  K  Y  K  I  H  Q  T  C  Q  H  V  E  I  *  F  L  N  C  N  F  *  R  T  R  Q  S  H  D  W  R  *  D  M  Q  K  C  Y  D  T  N  L  *  P  K  T  C  L  L  C  I  D  E  F  N  N  Q  Y  I  Y  I  Y  I  Y  I  K  S  H  I  R  T  N  V  I  </second_frame>
            <third_frame>   M  F  F  L  L  L  K  N  F  K  E  D  C  H  C  Q  L  L  A  *  E  K  V  K  M  M  I  N  L  L  L  M  G  H  E  M  K  C  K  P  L  N  Q  L  :  S  F  L  L  N  F  E  L  *  K  *  H  *  K  E  Y  A  V  I  L  T  L  R  H  E  N  *  R  L  L  L  T  R  L  *  M  S  S  P  Q  R :   L  V  V  A  T  W  I  E  C  A  N  *  R  V  Q  *  L  G  *  L  V  G  F  K  K :   *  G  M  I  L  N  N  Y  S  K  M  M  V  T  W  L  T  F  I  S  Q  E  N  *  L  P  E  F  H  P  P  *  V  V  R  W  H  L  T  G  L  L  I  R  S  Q  Y  A  Q  S  Y  Y  P  K  Q  A  G  S  V  G  *  L  M  R  R  L  M  L  R  N  L  K  C  C  L  R :   R  T  L  C  K  L  K  A  R  *  T  N  *  Q  R :   C  A  N  I  L  M  T  L  R  T  I  S  I  F  S :   W  T  I  I  E  I  S  *  S  S :   W  S  C  S  *  V  L  V  Q  F  V  *  Q  C  T  P  W  W  L  Q  Y  L  E  *  I  F  Q  F  H  G  R  K  T  M  A  T  F  L  N  G :   W  S  F  F  L  E  L  L  L  H  P  F  S  Y  Q  *  L  H  M  L  G  T  R  V  L  L  D  L  K  S  *  Y  L  L  L  L  R  S  L  Y  I  N  I  K  Y  T  R  H  V  N  M  L  K  F  N  F  *  I  V  T  F  R  G  R  G  R  A  M  I  G  D  K  I  C  K  N  V  T  I  R  I  Y  D  L  K  H  A  C  Y  V  L  M  N  S  T  I  N  I  Y  I  Y  I  Y  I  *  N  L  T  Y  A  Q  M  *  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0076N09.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29290" stop="29422"/>
                    <exon start="29532" stop="29653"/>
                    <exon start="30611" stop="30685"/>
                    <exon start="30855" stop="31082"/>
                    <exon start="31166" stop="31210"/>
                    <exon start="31324" stop="31368"/>
                    <exon start="31469" stop="31498"/>
                    <exon start="31606" stop="31725"/>
                    <exon start="32269" stop="32355"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>882</number_coding_nucleotides>
                  <number_encoded_amino_acids>294</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NVLPVVEELQRRLPLPAISLGEGEDDDQSVVNGTRNEMQTIEPTEFPFEFRALEVALEGVCSYLDTQTRELETAAYPALDELTSKISSRNLDRVRKLKSAMTRLTSRVQKVRDDLEQLLEDDGDMADLYLSRKLVAGVSSPLSGQVAPYWSPDTFSIRSKLLSKASRISGITHEETDVEELEMLLEAYFVQIESTMNKLTTLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCLTVYSLVAAIFGMNIPVPWKKDHGYLFKWVVILSGIASASVFLSIIAYARHKGLVGS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="35416" PGL_stop="40175"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35416" e_stop="35614"/>
            <exon e_start="35726" e_stop="35776"/>
            <exon e_start="36937" e_stop="36988"/>
            <exon e_start="37145" e_stop="37203"/>
            <exon e_start="37368" e_stop="37413"/>
            <exon e_start="39469" e_stop="39617"/>
            <exon e_start="40046" e_stop="40175"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.936" acc_prob="0.994" e_score="0.879"/>
          <exon-intron don_prob="0.639" acc_prob="0.993" e_score="0.922"/>
          <exon-intron don_prob="0.994" acc_prob="0.976" e_score="0.981"/>
          <exon-intron don_prob="0.915" acc_prob="0.999" e_score="0.949"/>
          <exon-intron don_prob="0.998" acc_prob="0.714" e_score="0.957"/>
          <exon-intron don_prob="0.987" acc_prob="0.000" e_score="0.946"/>
          <exon-only e_score="0.831"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.879">
            <gDNA_exon_boundary e_start="35416" e_stop="35614" e_length="199"/>
          </exon>
          <intron i_serial="1" don_prob="0.936" acc_prob="0.994">
            <gDNA_intron_boundary i_start="35615" i_stop="35725" i_length="111"/>
          </intron>
          <exon e_serial="2" e_score="0.922">
            <gDNA_exon_boundary e_start="35726" e_stop="35776" e_length="51"/>
          </exon>
          <intron i_serial="2" don_prob="0.639" acc_prob="0.993">
            <gDNA_intron_boundary i_start="35777" i_stop="36936" i_length="1160"/>
          </intron>
          <exon e_serial="3" e_score="0.981">
            <gDNA_exon_boundary e_start="36937" e_stop="36988" e_length="52"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.976">
            <gDNA_intron_boundary i_start="36989" i_stop="37144" i_length="156"/>
          </intron>
          <exon e_serial="4" e_score="0.949">
            <gDNA_exon_boundary e_start="37145" e_stop="37203" e_length="59"/>
          </exon>
          <intron i_serial="4" don_prob="0.915" acc_prob="0.999">
            <gDNA_intron_boundary i_start="37204" i_stop="37367" i_length="164"/>
          </intron>
          <exon e_serial="5" e_score="0.957">
            <gDNA_exon_boundary e_start="37368" e_stop="37413" e_length="46"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.714">
            <gDNA_intron_boundary i_start="37414" i_stop="39468" i_length="2055"/>
          </intron>
          <exon e_serial="6" e_score="0.946">
            <gDNA_exon_boundary e_start="39469" e_stop="39617" e_length="149"/>
          </exon>
          <intron i_serial="6" don_prob="0.987" acc_prob="0.000">
            <gDNA_intron_boundary i_start="39618" i_stop="40045" i_length="428"/>
          </intron>
          <exon e_serial="7" e_score="0.831">
            <gDNA_exon_boundary e_start="40046" e_stop="40175" e_length="130"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35416" stop="35614"/>
              <exon start="35726" stop="35776"/>
              <exon start="36937" stop="36988"/>
              <exon start="37145" stop="37203"/>
              <exon start="37368" stop="37413"/>
              <exon start="39469" stop="39617"/>
              <exon start="40046" stop="40175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585641" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATATATAACAGTAGTTCTACACACAAGCTGAAAGGTTCTTTTTTTTTTTTATTTGCTTTGTTCTCAATTGAGATGGGAACACGAGAGGTATACGAAGAAAAGCTGAAGAGAGGGAATCTCCATCATGATCCTACAATCAAACCTGGCCTCGGCTCTGCTAGATGTCCTCGTTGTCTTTCTCTCTTGAACTCCAATTCA : AAAAATGGAGAATGGGCGATTACTCCTGTTCTACATGATTTCACAATTGTG : GCTGGCTCTGGAATTGGTGGACTGCTCAGTGTAATTCATGGTTTCAATACAG : GAATTCCTTTTGTCCAGAGACATGTGAAGGGTCCAAAGTGGCTTCCATTTGTTATAGGG : CTTCCTCCACTACTCATGTTCTCTGCAGCTAGCGCGACATTTGGTG : GATATACACTTCCAAGGTTTACTCAACTTACGATGACTTCATATTACACTGCTTCAAGTGCTTCACATTACGGAATATCATTGCTTACCAGACGTATTGAGGAGACCCATACTTCTGGTGTTCAACCTAAAAAACTCAGCTGACTTGAG : TTGAAGATTCTTGGAGTGTGGGGTTAAAGAGGGAATTTTATGGCCCGACTTGCACAACATGTTTTGGACCAAGTATTTGACACTAAGGGCATTAGTGATTTGAAGTATTAACAGAGGGAAAATATGCATA</gDNA_template>
            <first_frame> Y  I  *  Q  *  F  Y  T  Q  A  E  R  F  F  F  F  F  I  C  F  V  L  N  *  D  G  N  T  R  G  I  R  R  K  A  E  E  R  E  S  P  S  *  S  Y  N  Q  T  W  P  R  L  C  *  M  S  S  L  S  F  S  L  E  L  Q  F   : K  K  W  R  M  G  D  Y  S  C  S  T  *  F  H  N  C   : G  W  L  W  N  W  W  T  A  Q  C  N  S  W  F  Q  Y  R :   N  S  F  C  P  E  T  C  E  G  S  K  V  A  S  I  C  Y  R   : A  S  S  T  T  H  V  L  C  S  *  R  D  I  W  W :   I  Y  T  S  K  V  Y  S  T  Y  D  D  F  I  L  H  C  F  K  C  F  T  L  R  N  I  I  A  Y  Q  T  Y  *  G  D  P  Y  F  W  C  S  T  *  K  T  Q  L  T  *   : V  E  D  S  W  S  V  G  L  K  R  E  F  Y  G  P  T  C  T  T  C  F  G  P  S  I  *  H  *  G  H  *  *  F  E  V  L  T  E  G  K  Y  A   </first_frame>
            <second_frame>  I  Y  N  S  S  S  T  H  K  L  K  G  S  F  F  F  L  F  A  L  F  S  I  E  M  G  T  R  E  V  Y  E  E  K  L  K  R  G  N  L  H  H  D  P  T  I  K  P  G  L  G  S  A  R  C  P  R  C  L  S  L  L  N  S  N  S  :  K  N  G  E  W  A  I  T  P  V  L  H  D  F  T  I  V  :  A  G  S  G  I  G  G  L  L  S  V  I  H  G  F  N  T   : G  I  P  F  V  Q  R  H  V  K  G  P  K  W  L  P  F  V  I  G  :  L  P  P  L  L  M  F  S  A  A  S  A  T  F  G   : G  Y  T  L  P  R  F  T  Q  L  T  M  T  S  Y  Y  T  A  S  S  A  S  H  Y  G  I  S  L  L  T  R  R  I  E  E  T  H  T  S  G  V  Q  P  K  K  L  S  *  L  E  :  L  K  I  L  G  V  W  G  *  R  G  N  F  M  A  R  L  A  Q  H  V  L  D  Q  V  F  D  T  K  G  I  S  D  L  K  Y  *  Q  R  E  N  M  H  </second_frame>
            <third_frame>   Y  I  T  V  V  L  H  T  S  *  K  V  L  F  F  F  Y  L  L  C  S  Q  L  R  W  E  H  E  R  Y  T  K  K  S  *  R  E  G  I  S  I  M  I  L  Q  S  N  L  A  S  A  L  L  D  V  L  V  V  F  L  S  *  T  P  I  Q :   K  M  E  N  G  R  L  L  L  F  Y  M  I  S  Q  L  W :   L  A  L  E  L  V  D  C  S  V  *  F  M  V  S  I  Q  :  E  F  L  L  S  R  D  M  *  R  V  Q  S  G  F  H  L  L  *  G :   F  L  H  Y  S  C  S  L  Q  L  A  R  H  L  V  :  D  I  H  F  Q  G  L  L  N  L  R  *  L  H  I  T  L  L  Q  V  L  H  I  T  E  Y  H  C  L  P  D  V  L  R  R  P  I  L  L  V  F  N  L  K  N  S  A  D  L  S :   *  R  F  L  E  C  G  V  K  E  G  I  L  W  P  D  L  H  N  M  F  W  T  K  Y  L  T  L  R  A  L  V  I  *  S  I  N  R  G  K  I  C  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0076N09.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35417" stop="35614"/>
                    <exon start="35726" stop="35776"/>
                    <exon start="36937" stop="36988"/>
                    <exon start="37145" stop="37203"/>
                    <exon start="37368" stop="37413"/>
                    <exon start="39469" stop="39611"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>546</number_coding_nucleotides>
                  <number_encoded_amino_acids>182</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IYNSSSTHKLKGSFFFLFALFSIEMGTREVYEEKLKRGNLHHDPTIKPGLGSARCPRCLSLLNSNSKNGEWAITPVLHDFTIVAGSGIGGLLSVIHGFNTGIPFVQRHVKGPKWLPFVIGLPPLLMFSAASATFGGYTLPRFTQLTMTSYYTASSASHYGISLLTRRIEETHTSGVQPKKLS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="35514" e_stop="35614"/>
            <exon e_start="35726" e_stop="35776"/>
            <exon e_start="36937" e_stop="36988"/>
            <exon e_start="37145" e_stop="37203"/>
            <exon e_start="37368" e_stop="37413"/>
            <exon e_start="39469" e_stop="39786"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.936" acc_prob="0.994" e_score="0.960"/>
          <exon-intron don_prob="0.639" acc_prob="0.993" e_score="0.902"/>
          <exon-intron don_prob="0.994" acc_prob="0.976" e_score="0.981"/>
          <exon-intron don_prob="0.915" acc_prob="0.999" e_score="0.983"/>
          <exon-intron don_prob="0.998" acc_prob="0.714" e_score="0.978"/>
          <exon-only e_score="0.921"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.960">
            <gDNA_exon_boundary e_start="35514" e_stop="35614" e_length="101"/>
          </exon>
          <intron i_serial="1" don_prob="0.936" acc_prob="0.994">
            <gDNA_intron_boundary i_start="35615" i_stop="35725" i_length="111"/>
          </intron>
          <exon e_serial="2" e_score="0.902">
            <gDNA_exon_boundary e_start="35726" e_stop="35776" e_length="51"/>
          </exon>
          <intron i_serial="2" don_prob="0.639" acc_prob="0.993">
            <gDNA_intron_boundary i_start="35777" i_stop="36936" i_length="1160"/>
          </intron>
          <exon e_serial="3" e_score="0.981">
            <gDNA_exon_boundary e_start="36937" e_stop="36988" e_length="52"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.976">
            <gDNA_intron_boundary i_start="36989" i_stop="37144" i_length="156"/>
          </intron>
          <exon e_serial="4" e_score="0.983">
            <gDNA_exon_boundary e_start="37145" e_stop="37203" e_length="59"/>
          </exon>
          <intron i_serial="4" don_prob="0.915" acc_prob="0.999">
            <gDNA_intron_boundary i_start="37204" i_stop="37367" i_length="164"/>
          </intron>
          <exon e_serial="5" e_score="0.978">
            <gDNA_exon_boundary e_start="37368" e_stop="37413" e_length="46"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.714">
            <gDNA_intron_boundary i_start="37414" i_stop="39468" i_length="2055"/>
          </intron>
          <exon e_serial="6" e_score="0.921">
            <gDNA_exon_boundary e_start="39469" e_stop="39786" e_length="318"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35514" stop="35614"/>
              <exon start="35726" stop="35776"/>
              <exon start="36937" stop="36988"/>
              <exon start="37145" stop="37203"/>
              <exon start="37368" stop="37413"/>
              <exon start="39469" stop="39786"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285238" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAGCTGAAGAGAGGGAATCTCCATCATGATCCTACAATCAAACCTGGCCTCGGCTCTGCTAGATGTCCTCGTTGTCTTTCTCTCTTGAACTCCAATTCA : AAAAATGGAGAATGGGCGATTACTCCTGTTCTACATGATTTCACAATTGTG : GCTGGCTCTGGAATTGGTGGACTGCTCAGTGTAATTCATGGTTTCAATACAG : GAATTCCTTTTGTCCAGAGACATGTGAAGGGTCCAAAGTGGCTTCCATTTGTTATAGGG : CTTCCTCCACTACTCATGTTCTCTGCAGCTAGCGCGACATTTGGTG : GATATACACTTCCAAGGTTTACTCAACTTACGATGACTTCATATTACACTGCTTCAAGTGCTTCACATTACGGAATATCATTGCTTACCAGACGTATTGAGGAGACCCATACTTCTGGTGTTCAACCTAAAAAACTCAGCTGACTTGAGGTGCACAAAATCAGAGCCAAACTTTACTTCAAATTTTGCAATATATTATATATAGTTGGAGCAATTGTCAATTCAAAAGATGCATGTTCATTGCTTTGGTGACTTCTCTTTTGATAAAATATATAGTTTTTACTTTGTAATAATAGGAATGTTTGAACTTGGAAGAAAA</gDNA_template>
            <first_frame> K  S  *  R  E  G  I  S  I  M  I  L  Q  S  N  L  A  S  A  L  L  D  V  L  V  V  F  L  S  *  T  P  I  Q :   K  M  E  N  G  R  L  L  L  F  Y  M  I  S  Q  L  W :   L  A  L  E  L  V  D  C  S  V  *  F  M  V  S  I  Q  :  E  F  L  L  S  R  D  M  *  R  V  Q  S  G  F  H  L  L  *  G :   F  L  H  Y  S  C  S  L  Q  L  A  R  H  L  V  :  D  I  H  F  Q  G  L  L  N  L  R  *  L  H  I  T  L  L  Q  V  L  H  I  T  E  Y  H  C  L  P  D  V  L  R  R  P  I  L  L  V  F  N  L  K  N  S  A  D  L  R  C  T  K  S  E  P  N  F  T  S  N  F  A  I  Y  Y  I  *  L  E  Q  L  S  I  Q  K  M  H  V  H  C  F  G  D  F  S  F  D  K  I  Y  S  F  Y  F  V  I  I  G  M  F  E  L  G  R  K </first_frame>
            <second_frame>  K  A  E  E  R  E  S  P  S  *  S  Y  N  Q  T  W  P  R  L  C  *  M  S  S  L  S  F  S  L  E  L  Q  F   : K  K  W  R  M  G  D  Y  S  C  S  T  *  F  H  N  C   : G  W  L  W  N  W  W  T  A  Q  C  N  S  W  F  Q  Y  R :   N  S  F  C  P  E  T  C  E  G  S  K  V  A  S  I  C  Y  R   : A  S  S  T  T  H  V  L  C  S  *  R  D  I  W  W :   I  Y  T  S  K  V  Y  S  T  Y  D  D  F  I  L  H  C  F  K  C  F  T  L  R  N  I  I  A  Y  Q  T  Y  *  G  D  P  Y  F  W  C  S  T  *  K  T  Q  L  T  *  G  A  Q  N  Q  S  Q  T  L  L  Q  I  L  Q  Y  I  I  Y  S  W  S  N  C  Q  F  K  R  C  M  F  I  A  L  V  T  S  L  L  I  K  Y  I  V  F  T  L  *  *  *  E  C  L  N  L  E  E   </second_frame>
            <third_frame>   K  L  K  R  G  N  L  H  H  D  P  T  I  K  P  G  L  G  S  A  R  C  P  R  C  L  S  L  L  N  S  N  S  :  K  N  G  E  W  A  I  T  P  V  L  H  D  F  T  I  V  :  A  G  S  G  I  G  G  L  L  S  V  I  H  G  F  N  T   : G  I  P  F  V  Q  R  H  V  K  G  P  K  W  L  P  F  V  I  G  :  L  P  P  L  L  M  F  S  A  A  S  A  T  F  G   : G  Y  T  L  P  R  F  T  Q  L  T  M  T  S  Y  Y  T  A  S  S  A  S  H  Y  G  I  S  L  L  T  R  R  I  E  E  T  H  T  S  G  V  Q  P  K  K  L  S  *  L  E  V  H  K  I  R  A  K  L  Y  F  K  F  C  N  I  L  Y  I  V  G  A  I  V  N  S  K  D  A  C  S  L  L  W  *  L  L  F  *  *  N  I  *  F  L  L  C  N  N  R  N  V  *  T  W  K  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0076N09.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35516" stop="35614"/>
                    <exon start="35726" stop="35776"/>
                    <exon start="36937" stop="36988"/>
                    <exon start="37145" stop="37203"/>
                    <exon start="37368" stop="37413"/>
                    <exon start="39469" stop="39611"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>447</number_coding_nucleotides>
                  <number_encoded_amino_acids>149</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLKRGNLHHDPTIKPGLGSARCPRCLSLLNSNSKNGEWAITPVLHDFTIVAGSGIGGLLSVIHGFNTGIPFVQRHVKGPKWLPFVIGLPPLLMFSAASATFGGYTLPRFTQLTMTSYYTASSASHYGISLLTRRIEETHTSGVQPKKLS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="56102" PGL_stop="46729"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56059" e_stop="55937"/>
            <exon e_start="53184" e_stop="53051"/>
            <exon e_start="52871" e_stop="52588"/>
            <exon e_start="52427" e_stop="52312"/>
            <exon e_start="51575" e_stop="51486"/>
            <exon e_start="50207" e_stop="50143"/>
            <exon e_start="49268" e_stop="49107"/>
            <exon e_start="48813" e_stop="48735"/>
            <exon e_start="48490" e_stop="48413"/>
            <exon e_start="47348" e_stop="47274"/>
            <exon e_start="47119" e_stop="47084"/>
            <exon e_start="46991" e_stop="46729"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.972" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.912" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.996" e_score="0.978"/>
          <exon-intron don_prob="0.981" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.770" acc_prob="0.803" e_score="0.988"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="0.975"/>
          <exon-intron don_prob="1.000" acc_prob="0.991" e_score="0.974"/>
          <exon-intron don_prob="0.881" acc_prob="0.186" e_score="1.000"/>
          <exon-intron don_prob="0.920" acc_prob="0.809" e_score="1.000"/>
          <exon-only e_score="0.871"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="56059" e_stop="55937" e_length="123"/>
          </exon>
          <intron i_serial="1" don_prob="0.972" acc_prob="0.991">
            <gDNA_intron_boundary i_start="55936" i_stop="53185" i_length="2752"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="53184" e_stop="53051" e_length="134"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.912">
            <gDNA_intron_boundary i_start="53050" i_stop="52872" i_length="179"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="52871" e_stop="52588" e_length="284"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.985">
            <gDNA_intron_boundary i_start="52587" i_stop="52428" i_length="160"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="52427" e_stop="52312" e_length="116"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.990">
            <gDNA_intron_boundary i_start="52311" i_stop="51576" i_length="736"/>
          </intron>
          <exon e_serial="5" e_score="0.978">
            <gDNA_exon_boundary e_start="51575" e_stop="51486" e_length="90"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.996">
            <gDNA_intron_boundary i_start="51485" i_stop="50208" i_length="1278"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="50207" e_stop="50143" e_length="65"/>
          </exon>
          <intron i_serial="6" don_prob="0.981" acc_prob="0.998">
            <gDNA_intron_boundary i_start="50142" i_stop="49269" i_length="874"/>
          </intron>
          <exon e_serial="7" e_score="0.988">
            <gDNA_exon_boundary e_start="49268" e_stop="49107" e_length="162"/>
          </exon>
          <intron i_serial="7" don_prob="0.770" acc_prob="0.803">
            <gDNA_intron_boundary i_start="49106" i_stop="48814" i_length="293"/>
          </intron>
          <exon e_serial="8" e_score="0.975">
            <gDNA_exon_boundary e_start="48813" e_stop="48735" e_length="79"/>
          </exon>
          <intron i_serial="8" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="48734" i_stop="48491" i_length="244"/>
          </intron>
          <exon e_serial="9" e_score="0.974">
            <gDNA_exon_boundary e_start="48490" e_stop="48413" e_length="78"/>
          </exon>
          <intron i_serial="9" don_prob="1.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="48412" i_stop="47349" i_length="1064"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="47348" e_stop="47274" e_length="75"/>
          </exon>
          <intron i_serial="10" don_prob="0.881" acc_prob="0.186">
            <gDNA_intron_boundary i_start="47273" i_stop="47120" i_length="154"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="47119" e_stop="47084" e_length="36"/>
          </exon>
          <intron i_serial="11" don_prob="0.920" acc_prob="0.809">
            <gDNA_intron_boundary i_start="47083" i_stop="46992" i_length="92"/>
          </intron>
          <exon e_serial="12" e_score="0.871">
            <gDNA_exon_boundary e_start="46991" e_stop="46729" e_length="263"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56059" stop="55937"/>
              <exon start="53184" stop="53051"/>
              <exon start="52871" stop="52664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337668" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56056" stop="55937"/>
              <exon start="53184" stop="53051"/>
              <exon start="52871" stop="52588"/>
              <exon start="52427" stop="52334"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56056" stop="55937"/>
              <exon start="53184" stop="53051"/>
              <exon start="52871" stop="52588"/>
              <exon start="52427" stop="52400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301158" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56036" stop="55937"/>
              <exon start="53184" stop="53051"/>
              <exon start="52871" stop="52595"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310166" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55993" stop="55937"/>
              <exon start="53184" stop="53051"/>
              <exon start="52871" stop="52588"/>
              <exon start="52427" stop="52323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231819" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55993" stop="55937"/>
              <exon start="53184" stop="53051"/>
              <exon start="52871" stop="52588"/>
              <exon start="52427" stop="52373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242680" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55993" stop="55937"/>
              <exon start="53184" stop="53051"/>
              <exon start="52871" stop="52590"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236345" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52829" stop="52588"/>
              <exon start="52427" stop="52312"/>
              <exon start="51575" stop="51486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313375" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52829" stop="52617"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313374" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52809" stop="52588"/>
              <exon start="52427" stop="52312"/>
              <exon start="51575" stop="51486"/>
              <exon start="50207" stop="50143"/>
              <exon start="49268" stop="49107"/>
              <exon start="48813" stop="48735"/>
              <exon start="48490" stop="48453"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323287" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52809" stop="52588"/>
              <exon start="52427" stop="52312"/>
              <exon start="51575" stop="51486"/>
              <exon start="50207" stop="50143"/>
              <exon start="49268" stop="49189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321831" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52747" stop="52588"/>
              <exon start="52427" stop="52312"/>
              <exon start="51575" stop="51486"/>
              <exon start="50207" stop="50143"/>
              <exon start="49268" stop="49133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331357" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52685" stop="52588"/>
              <exon start="52427" stop="52312"/>
              <exon start="51575" stop="51486"/>
              <exon start="50207" stop="50143"/>
              <exon start="49268" stop="49225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469535" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52683" stop="52588"/>
              <exon start="52427" stop="52312"/>
              <exon start="51575" stop="51486"/>
              <exon start="50207" stop="50143"/>
              <exon start="49268" stop="49133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697392" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52592" stop="52588"/>
              <exon start="52427" stop="52312"/>
              <exon start="51575" stop="51486"/>
              <exon start="50207" stop="50143"/>
              <exon start="49268" stop="49107"/>
              <exon start="48813" stop="48735"/>
              <exon start="48490" stop="48413"/>
              <exon start="47348" stop="47274"/>
              <exon start="47119" stop="47090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464565" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50185" stop="50143"/>
              <exon start="49268" stop="49107"/>
              <exon start="48813" stop="48735"/>
              <exon start="48490" stop="48413"/>
              <exon start="47348" stop="47274"/>
              <exon start="47119" stop="47084"/>
              <exon start="46991" stop="46729"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697780" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTATCTTCCTCTTTGTTATTCTGAAAAACTTTCTTACTTTCCATGGAAAAAAGTAGATTCATTCTTCTGCCCAGTTTCGGAGACGGAAATTCCTCATAGATTTGCTCCTACGAACAAAAAG : ATGCAAGGTGTGTTGAAATTTCTGAAGTTGTCTGCTCCGGATGCTTCTTTGGTTTGCAATGTCTGTTGAAATTTGTGAAGTTGGCTTCTCCAAATACTTCTCTGGTTTCTTATTTTTTATACACTAATTGGCTG : GCACATGTCCGTGCCTCGCACGGGCACACTACATCTAGTAACAAAAGAGAGGGGAAAGCGACTCTGGTGGGGTTGATGGTATCTTCTTCGAATTTGAATTGAATTGAATTCAATGGAGAAGAATATCTGTTAATAAGATTGCAAAAAATAAATGATAAAAATGTTAGAAGAAGACGAAGATTTCCTGGAATCAGAAACACAACTTACTGATGACCAGAAAATTGAGATTGCCAAATGGTTCCTTCTTAATGCCCCAGCCGGCGAAATTCAGTACGTCGCCAAAG : ATGTTAGAGCTATTTTAAAGGACGAAAATATATATAAGAAAGCGGCCGAGGAGTCATTTCCTTCGTACAACAAATCTCACTTGATTTGTCTCGAATTCCCAAACAGAAGTGGCGAT : GTACTGATTACATCATTTAGTGAGGTTCATAAGGATGAGTATCTTGATCCCCGGACTGCGCAGGTTGCCAGAGTTGACCATGTCAAGCAA : GTTTGTAAAGACGTTAGGCCAGCAAGAGATGAAGAACTTCCATCTGCTTTCGTGGAAGAGTATAG : GTCTGCCATGGATGCTGAAATTATGAAGTATGTGAGTGAAACATATCCAAAAGGCATCTGTTCAGTTTACTGTACGAAGGGAAAGGATGTGGAAGAGCCAGGATTTGACTTTGAACTTGTTGTGGTGATTTCAGCTGCTAGGCATAGTCCTCAGAATTTCTG : CAATGGAAGCTGGCGATCAATATGGAATATTGAATTTAAGGACGATATTCAATCTGTAGAAGTGAGAGGCGAGATGCAG : GTTGGCGCCCATTACTTTGAAGAGGGAAATGTACAGCTAGATGCAAAACACAAATGTAAGGATACAACGCTAATTCAG : TCCCCAGATGATTCTGCAATTTCCTTGGTCAACATTATTCGCCACCATGAGACTGAGTATCTGGCTTCTCTTCAG : ACATCTTACTTGAAATTGCCTGATACCACTTTCAAG : GACTTGCGGAGGAAGCTTCCCGTTACTCGTACATTGTTCCCATGGCACAACACTGCACAATTTAGCCTTACTCGAGATATTGAAAAAGAACTTCGAATTGGAAAATAGAAACATTGCATGTCTTTTTATACAAGTTGAATATGTACACAGTACACACCATTCTTGATATGACAAGCGAGTTTATACTTGAGATTGCCGTCTCCGGCTATTTGTTGCCTTCTTTCTATTGTATTCCTTTGAGAGAGGAAAGTTCATGCTAATTT</gDNA_template>
            <first_frame> F  Y  L  P  L  C  Y  S  E  K  L  S  Y  F  P  W  K  K  V  D  S  F  F  C  P  V  S  E  T  E  I  P  H  R  F  A  P  T  N  K  K  :  M  Q  G  V  L  K  F  L  K  L  S  A  P  D  A  S  L  V  C  N  V  C  *  N  L  *  S  W  L  L  Q  I  L  L  W  F  L  I  F  Y  T  L  I  G  W :   H  M  S  V  P  R  T  G  T  L  H  L  V  T  K  E  R  G  K  R  L  W  W  G  *  W  Y  L  L  R  I  *  I  E  L  N  S  M  E  K  N  I  C  *  *  D  C  K  K  *  M  I  K  M  L  E  E  D  E  D  F  L  E  S  E  T  Q  L  T  D  D  Q  K  I  E  I  A  K  W  F  L  L  N  A  P  A  G  E  I  Q  Y  V  A  K   : D  V  R  A  I  L  K  D  E  N  I  Y  K  K  A  A  E  E  S  F  P  S  Y  N  K  S  H  L  I  C  L  E  F  P  N  R  S  G  D  :  V  L  I  T  S  F  S  E  V  H  K  D  E  Y  L  D  P  R  T  A  Q  V  A  R  V  D  H  V  K  Q  :  V  C  K  D  V  R  P  A  R  D  E  E  L  P  S  A  F  V  E  E  Y  R :   S  A  M  D  A  E  I  M  K  Y  V  S  E  T  Y  P  K  G  I  C  S  V  Y  C  T  K  G  K  D  V  E  E  P  G  F  D  F  E  L  V  V  V  I  S  A  A  R  H  S  P  Q  N  F  C :   N  G  S  W  R  S  I  W  N  I  E  F  K  D  D  I  Q  S  V  E  V  R  G  E  M  Q  :  V  G  A  H  Y  F  E  E  G  N  V  Q  L  D  A  K  H  K  C  K  D  T  T  L  I  Q  :  S  P  D  D  S  A  I  S  L  V  N  I  I  R  H  H  E  T  E  Y  L  A  S  L  Q  :  T  S  Y  L  K  L  P  D  T  T  F  K  :  D  L  R  R  K  L  P  V  T  R  T  L  F  P  W  H  N  T  A  Q  F  S  L  T  R  D  I  E  K  E  L  R  I  G  K  *  K  H  C  M  S  F  Y  T  S  *  I  C  T  Q  Y  T  P  F  L  I  *  Q  A  S  L  Y  L  R  L  P  S  P  A  I  C  C  L  L  S  I  V  F  L  *  E  R  K  V  H  A  N   </first_frame>
            <second_frame>  F  I  F  L  F  V  I  L  K  N  F  L  T  F  H  G  K  K  *  I  H  S  S  A  Q  F  R  R  R  K  F  L  I  D  L  L  L  R  T  K  R :   C  K  V  C  *  N  F  *  S  C  L  L  R  M  L  L  W  F  A  M  S  V  E  I  C  E  V  G  F  S  K  Y  F  S  G  F  L  F  F  I  H  *  L  A   : G  T  C  P  C  L  A  R  A  H  Y  I  *  *  Q  K  R  G  E  S  D  S  G  G  V  D  G  I  F  F  E  F  E  L  N  *  I  Q  W  R  R  I  S  V  N  K  I  A  K  N  K  *  *  K  C  *  K  K  T  K  I  S  W  N  Q  K  H  N  L  L  M  T  R  K  L  R  L  P  N  G  S  F  L  M  P  Q  P  A  K  F  S  T  S  P  K  :  M  L  E  L  F  *  R  T  K  I  Y  I  R  K  R  P  R  S  H  F  L  R  T  T  N  L  T  *  F  V  S  N  S  Q  T  E  V  A  M :   Y  *  L  H  H  L  V  R  F  I  R  M  S  I  L  I  P  G  L  R  R  L  P  E  L  T  M  S  S  K :   F  V  K  T  L  G  Q  Q  E  M  K  N  F  H  L  L  S  W  K  S  I   : G  L  P  W  M  L  K  L  *  S  M  *  V  K  H  I  Q  K  A  S  V  Q  F  T  V  R  R  E  R  M  W  K  S  Q  D  L  T  L  N  L  L  W  *  F  Q  L  L  G  I  V  L  R  I  S   : A  M  E  A  G  D  Q  Y  G  I  L  N  L  R  T  I  F  N  L  *  K  *  E  A  R  C  R :   L  A  P  I  T  L  K  R  E  M  Y  S  *  M  Q  N  T  N  V  R  I  Q  R  *  F  S :   P  Q  M  I  L  Q  F  P  W  S  T  L  F  A  T  M  R  L  S  I  W  L  L  F  R :   H  L  T  *  N  C  L  I  P  L  S  R :   T  C  G  G  S  F  P  L  L  V  H  C  S  H  G  T  T  L  H  N  L  A  L  L  E  I  L  K  K  N  F  E  L  E  N  R  N  I  A  C  L  F  I  Q  V  E  Y  V  H  S  T  H  H  S  *  Y  D  K  R  V  Y  T  *  D  C  R  L  R  L  F  V  A  F  F  L  L  Y  S  F  E  R  G  K  F  M  L  I  </second_frame>
            <third_frame>   L  S  S  S  L  L  F  *  K  T  F  L  L  S  M  E  K  S  R  F  I  L  L  P  S  F  G  D  G  N  S  S  *  I  C  S  Y  E  Q  K   : D  A  R  C  V  E  I  S  E  V  V  C  S  G  C  F  F  G  L  Q  C  L  L  K  F  V  K  L  A  S  P  N  T  S  L  V  S  Y  F  L  Y  T  N  W  L  :  A  H  V  R  A  S  H  G  H  T  T  S  S  N  K  R  E  G  K  A  T  L  V  G  L  M  V  S  S  S  N  L  N  *  I  E  F  N  G  E  E  Y  L  L  I  R  L  Q  K  I  N  D  K  N  V  R  R  R  R  R  F  P  G  I  R  N  T  T  Y  *  *  P  E  N  *  D  C  Q  M  V  P  S  *  C  P  S  R  R  N  S  V  R  R  Q  R :   C  *  S  Y  F  K  G  R  K  Y  I  *  E  S  G  R  G  V  I  S  F  V  Q  Q  I  S  L  D  L  S  R  I  P  K  Q  K  W  R   : C  T  D  Y  I  I  *  *  G  S  *  G  *  V  S  *  S  P  D  C  A  G  C  Q  S  *  P  C  Q  A   : S  L  *  R  R  *  A  S  K  R  *  R  T  S  I  C  F  R  G  R  V  *  :  V  C  H  G  C  *  N  Y  E  V  C  E  *  N  I  S  K  R  H  L  F  S  L  L  Y  E  G  K  G  C  G  R  A  R  I  *  L  *  T  C  C  G  D  F  S  C  *  A  *  S  S  E  F  L  :  Q  W  K  L  A  I  N  M  E  Y  *  I  *  G  R  Y  S  I  C  R  S  E  R  R  D  A   : G  W  R  P  L  L  *  R  G  K  C  T  A  R  C  K  T  Q  M  *  G  Y  N  A  N  S   : V  P  R  *  F  C  N  F  L  G  Q  H  Y  S  P  P  *  D  *  V  S  G  F  S  S   : D  I  L  L  E  I  A  *  Y  H  F  Q   : G  L  A  E  E  A  S  R  Y  S  Y  I  V  P  M  A  Q  H  C  T  I  *  P  Y  S  R  Y  *  K  R  T  S  N  W  K  I  E  T  L  H  V  F  L  Y  K  L  N  M  Y  T  V  H  T  I  L  D  M  T  S  E  F  I  L  E  I  A  V  S  G  Y  L  L  P  S  F  Y  C  I  P  L  R  E  E  S  S  C  *  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0076N09.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52720" stop="52588"/>
                    <exon start="52427" stop="52312"/>
                    <exon start="51575" stop="51486"/>
                    <exon start="50207" stop="50143"/>
                    <exon start="49268" stop="49107"/>
                    <exon start="48813" stop="48735"/>
                    <exon start="48490" stop="48413"/>
                    <exon start="47348" stop="47274"/>
                    <exon start="47119" stop="47084"/>
                    <exon start="46991" stop="46884"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>939</number_coding_nucleotides>
                  <number_encoded_amino_acids>313</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MIKMLEEDEDFLESETQLTDDQKIEIAKWFLLNAPAGEIQYVAKDVRAILKDENIYKKAAEESFPSYNKSHLICLEFPNRSGDVLITSFSEVHKDEYLDPRTAQVARVDHVKQVCKDVRPARDEELPSAFVEEYRSAMDAEIMKYVSETYPKGICSVYCTKGKDVEEPGFDFELVVVISAARHSPQNFCNGSWRSIWNIEFKDDIQSVEVRGEMQVGAHYFEEGNVQLDAKHKCKDTTLIQSPDDSAISLVNIIRHHETEYLASLQTSYLKLPDTTFKDLRRKLPVTRTLFPWHNTAQFSLTRDIEKELRIGK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0076N09.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55958" stop="55937"/>
                    <exon start="53184" stop="53051"/>
                    <exon start="52871" stop="52770"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>255</number_coding_nucleotides>
                  <number_encoded_amino_acids>85</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ICSYEQKDARCVEISEVVCSGCFFGLQCLLKFVKLASPNTSLVSYFLYTNWLAHVRASHGHTTSSNKREGKATLVGLMVSSSNLN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="56059" e_stop="55937"/>
            <exon e_start="53184" e_stop="53051"/>
            <exon e_start="52871" e_stop="52588"/>
            <exon e_start="52427" e_stop="52312"/>
            <exon e_start="51575" e_stop="51486"/>
            <exon e_start="50207" e_stop="50143"/>
            <exon e_start="49268" e_stop="49107"/>
            <exon e_start="48841" e_stop="48735"/>
            <exon e_start="48490" e_stop="48413"/>
            <exon e_start="47348" e_stop="47274"/>
            <exon e_start="47119" e_stop="47084"/>
            <exon e_start="46991" e_stop="46743"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.972" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.912" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.996" e_score="0.978"/>
          <exon-intron don_prob="0.981" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.770" acc_prob="0.000" e_score="0.988"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="0.962"/>
          <exon-intron don_prob="1.000" acc_prob="0.991" e_score="0.949"/>
          <exon-intron don_prob="0.881" acc_prob="0.186" e_score="0.933"/>
          <exon-intron don_prob="0.920" acc_prob="0.809" e_score="1.000"/>
          <exon-only e_score="0.880"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="56059" e_stop="55937" e_length="123"/>
          </exon>
          <intron i_serial="1" don_prob="0.972" acc_prob="0.991">
            <gDNA_intron_boundary i_start="55936" i_stop="53185" i_length="2752"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="53184" e_stop="53051" e_length="134"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.912">
            <gDNA_intron_boundary i_start="53050" i_stop="52872" i_length="179"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="52871" e_stop="52588" e_length="284"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.985">
            <gDNA_intron_boundary i_start="52587" i_stop="52428" i_length="160"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="52427" e_stop="52312" e_length="116"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.990">
            <gDNA_intron_boundary i_start="52311" i_stop="51576" i_length="736"/>
          </intron>
          <exon e_serial="5" e_score="0.978">
            <gDNA_exon_boundary e_start="51575" e_stop="51486" e_length="90"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.996">
            <gDNA_intron_boundary i_start="51485" i_stop="50208" i_length="1278"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="50207" e_stop="50143" e_length="65"/>
          </exon>
          <intron i_serial="6" don_prob="0.981" acc_prob="0.998">
            <gDNA_intron_boundary i_start="50142" i_stop="49269" i_length="874"/>
          </intron>
          <exon e_serial="7" e_score="0.988">
            <gDNA_exon_boundary e_start="49268" e_stop="49107" e_length="162"/>
          </exon>
          <intron i_serial="7" don_prob="0.770" acc_prob="0.000">
            <gDNA_intron_boundary i_start="49106" i_stop="48842" i_length="265"/>
          </intron>
          <exon e_serial="8" e_score="0.962">
            <gDNA_exon_boundary e_start="48841" e_stop="48735" e_length="107"/>
          </exon>
          <intron i_serial="8" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="48734" i_stop="48491" i_length="244"/>
          </intron>
          <exon e_serial="9" e_score="0.949">
            <gDNA_exon_boundary e_start="48490" e_stop="48413" e_length="78"/>
          </exon>
          <intron i_serial="9" don_prob="1.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="48412" i_stop="47349" i_length="1064"/>
          </intron>
          <exon e_serial="10" e_score="0.933">
            <gDNA_exon_boundary e_start="47348" e_stop="47274" e_length="75"/>
          </exon>
          <intron i_serial="10" don_prob="0.881" acc_prob="0.186">
            <gDNA_intron_boundary i_start="47273" i_stop="47120" i_length="154"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="47119" e_stop="47084" e_length="36"/>
          </exon>
          <intron i_serial="11" don_prob="0.920" acc_prob="0.809">
            <gDNA_intron_boundary i_start="47083" i_stop="46992" i_length="92"/>
          </intron>
          <exon e_serial="12" e_score="0.880">
            <gDNA_exon_boundary e_start="46991" e_stop="46743" e_length="249"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56059" stop="55937"/>
              <exon start="53184" stop="53051"/>
              <exon start="52871" stop="52664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337668" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56056" stop="55937"/>
              <exon start="53184" stop="53051"/>
              <exon start="52871" stop="52588"/>
              <exon start="52427" stop="52334"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56056" stop="55937"/>
              <exon start="53184" stop="53051"/>
              <exon start="52871" stop="52588"/>
              <exon start="52427" stop="52400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301158" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56036" stop="55937"/>
              <exon start="53184" stop="53051"/>
              <exon start="52871" stop="52595"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310166" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55993" stop="55937"/>
              <exon start="53184" stop="53051"/>
              <exon start="52871" stop="52588"/>
              <exon start="52427" stop="52323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231819" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55993" stop="55937"/>
              <exon start="53184" stop="53051"/>
              <exon start="52871" stop="52588"/>
              <exon start="52427" stop="52373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242680" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55993" stop="55937"/>
              <exon start="53184" stop="53051"/>
              <exon start="52871" stop="52590"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236345" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52829" stop="52588"/>
              <exon start="52427" stop="52312"/>
              <exon start="51575" stop="51486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313375" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52829" stop="52617"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313374" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52809" stop="52588"/>
              <exon start="52427" stop="52312"/>
              <exon start="51575" stop="51486"/>
              <exon start="50207" stop="50143"/>
              <exon start="49268" stop="49189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321831" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52747" stop="52588"/>
              <exon start="52427" stop="52312"/>
              <exon start="51575" stop="51486"/>
              <exon start="50207" stop="50143"/>
              <exon start="49268" stop="49133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331357" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52685" stop="52588"/>
              <exon start="52427" stop="52312"/>
              <exon start="51575" stop="51486"/>
              <exon start="50207" stop="50143"/>
              <exon start="49268" stop="49225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469535" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52683" stop="52588"/>
              <exon start="52427" stop="52312"/>
              <exon start="51575" stop="51486"/>
              <exon start="50207" stop="50143"/>
              <exon start="49268" stop="49133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697392" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51575" stop="51486"/>
              <exon start="50207" stop="50143"/>
              <exon start="49268" stop="49107"/>
              <exon start="48841" stop="48735"/>
              <exon start="48490" stop="48476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E582868" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48814" stop="48735"/>
              <exon start="48490" stop="48413"/>
              <exon start="47348" stop="47274"/>
              <exon start="47119" stop="47084"/>
              <exon start="46991" stop="46743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274568" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTATCTTCCTCTTTGTTATTCTGAAAAACTTTCTTACTTTCCATGGAAAAAAGTAGATTCATTCTTCTGCCCAGTTTCGGAGACGGAAATTCCTCATAGATTTGCTCCTACGAACAAAAAG : ATGCAAGGTGTGTTGAAATTTCTGAAGTTGTCTGCTCCGGATGCTTCTTTGGTTTGCAATGTCTGTTGAAATTTGTGAAGTTGGCTTCTCCAAATACTTCTCTGGTTTCTTATTTTTTATACACTAATTGGCTG : GCACATGTCCGTGCCTCGCACGGGCACACTACATCTAGTAACAAAAGAGAGGGGAAAGCGACTCTGGTGGGGTTGATGGTATCTTCTTCGAATTTGAATTGAATTGAATTCAATGGAGAAGAATATCTGTTAATAAGATTGCAAAAAATAAATGATAAAAATGTTAGAAGAAGACGAAGATTTCCTGGAATCAGAAACACAACTTACTGATGACCAGAAAATTGAGATTGCCAAATGGTTCCTTCTTAATGCCCCAGCCGGCGAAATTCAGTACGTCGCCAAAG : ATGTTAGAGCTATTTTAAAGGACGAAAATATATATAAGAAAGCGGCCGAGGAGTCATTTCCTTCGTACAACAAATCTCACTTGATTTGTCTCGAATTCCCAAACAGAAGTGGCGAT : GTACTGATTACATCATTTAGTGAGGTTCATAAGGATGAGTATCTTGATCCCCGGACTGCGCAGGTTGCCAGAGTTGACCATGTCAAGCAA : GTTTGTAAAGACGTTAGGCCAGCAAGAGATGAAGAACTTCCATCTGCTTTCGTGGAAGAGTATAG : GTCTGCCATGGATGCTGAAATTATGAAGTATGTGAGTGAAACATATCCAAAAGGCATCTGTTCAGTTTACTGTACGAAGGGAAAGGATGTGGAAGAGCCAGGATTTGACTTTGAACTTGTTGTGGTGATTTCAGCTGCTAGGCATAGTCCTCAGAATTTCTG : AAGCTGATACTATATGCATCTTTTGTAGCAATGGAAGCTGGCGATCAATATGGAATATTGAATTTAAGGACGATATTCAATCTGTAGAAGTGAGAGGCGAGATGCAG : GTTGGCGCCCATTACTTTGAAGAGGGAAATGTACAGCTAGATGCAAAACACAAATGTAAGGATACAACGCTAATTCAG : TCCCCAGATGATTCTGCAATTTCCTTGGTCAACATTATTCGCCACCATGAGACTGAGTATCTGGCTTCTCTTCAG : ACATCTTACTTGAAATTGCCTGATACCACTTTCAAG : GACTTGCGGAGGAAGCTTCCCGTTACTCGTACATTGTTCCCATGGCACAACACTGCACAATTTAGCCTTACTCGAGATATTGAAAAAGAACTTCGAATTGGAAAATAGAAACATTGCATGTCTTTTTATACAAGTTGAATATGTACACAGTACACACCATTCTTGATATGACAAGCGAGTTTATACTTGAGATTGCCGTCTCCGGCTATTTGTTGCCTTCTTTCTATTGTATTCCTTTGAGAGAGGAAA</gDNA_template>
            <first_frame> F  Y  L  P  L  C  Y  S  E  K  L  S  Y  F  P  W  K  K  V  D  S  F  F  C  P  V  S  E  T  E  I  P  H  R  F  A  P  T  N  K  K  :  M  Q  G  V  L  K  F  L  K  L  S  A  P  D  A  S  L  V  C  N  V  C  *  N  L  *  S  W  L  L  Q  I  L  L  W  F  L  I  F  Y  T  L  I  G  W :   H  M  S  V  P  R  T  G  T  L  H  L  V  T  K  E  R  G  K  R  L  W  W  G  *  W  Y  L  L  R  I  *  I  E  L  N  S  M  E  K  N  I  C  *  *  D  C  K  K  *  M  I  K  M  L  E  E  D  E  D  F  L  E  S  E  T  Q  L  T  D  D  Q  K  I  E  I  A  K  W  F  L  L  N  A  P  A  G  E  I  Q  Y  V  A  K   : D  V  R  A  I  L  K  D  E  N  I  Y  K  K  A  A  E  E  S  F  P  S  Y  N  K  S  H  L  I  C  L  E  F  P  N  R  S  G  D  :  V  L  I  T  S  F  S  E  V  H  K  D  E  Y  L  D  P  R  T  A  Q  V  A  R  V  D  H  V  K  Q  :  V  C  K  D  V  R  P  A  R  D  E  E  L  P  S  A  F  V  E  E  Y  R :   S  A  M  D  A  E  I  M  K  Y  V  S  E  T  Y  P  K  G  I  C  S  V  Y  C  T  K  G  K  D  V  E  E  P  G  F  D  F  E  L  V  V  V  I  S  A  A  R  H  S  P  Q  N  F  * :   S  *  Y  Y  M  H  L  L  *  Q  W  K  L  A  I  N  M  E  Y  *  I  *  G  R  Y  S  I  C  R  S  E  R  R  D  A   : G  W  R  P  L  L  *  R  G  K  C  T  A  R  C  K  T  Q  M  *  G  Y  N  A  N  S   : V  P  R  *  F  C  N  F  L  G  Q  H  Y  S  P  P  *  D  *  V  S  G  F  S  S   : D  I  L  L  E  I  A  *  Y  H  F  Q   : G  L  A  E  E  A  S  R  Y  S  Y  I  V  P  M  A  Q  H  C  T  I  *  P  Y  S  R  Y  *  K  R  T  S  N  W  K  I  E  T  L  H  V  F  L  Y  K  L  N  M  Y  T  V  H  T  I  L  D  M  T  S  E  F  I  L  E  I  A  V  S  G  Y  L  L  P  S  F  Y  C  I  P  L  R  E  E  </first_frame>
            <second_frame>  F  I  F  L  F  V  I  L  K  N  F  L  T  F  H  G  K  K  *  I  H  S  S  A  Q  F  R  R  R  K  F  L  I  D  L  L  L  R  T  K  R :   C  K  V  C  *  N  F  *  S  C  L  L  R  M  L  L  W  F  A  M  S  V  E  I  C  E  V  G  F  S  K  Y  F  S  G  F  L  F  F  I  H  *  L  A   : G  T  C  P  C  L  A  R  A  H  Y  I  *  *  Q  K  R  G  E  S  D  S  G  G  V  D  G  I  F  F  E  F  E  L  N  *  I  Q  W  R  R  I  S  V  N  K  I  A  K  N  K  *  *  K  C  *  K  K  T  K  I  S  W  N  Q  K  H  N  L  L  M  T  R  K  L  R  L  P  N  G  S  F  L  M  P  Q  P  A  K  F  S  T  S  P  K  :  M  L  E  L  F  *  R  T  K  I  Y  I  R  K  R  P  R  S  H  F  L  R  T  T  N  L  T  *  F  V  S  N  S  Q  T  E  V  A  M :   Y  *  L  H  H  L  V  R  F  I  R  M  S  I  L  I  P  G  L  R  R  L  P  E  L  T  M  S  S  K :   F  V  K  T  L  G  Q  Q  E  M  K  N  F  H  L  L  S  W  K  S  I   : G  L  P  W  M  L  K  L  *  S  M  *  V  K  H  I  Q  K  A  S  V  Q  F  T  V  R  R  E  R  M  W  K  S  Q  D  L  T  L  N  L  L  W  *  F  Q  L  L  G  I  V  L  R  I  S   : E  A  D  T  I  C  I  F  C  S  N  G  S  W  R  S  I  W  N  I  E  F  K  D  D  I  Q  S  V  E  V  R  G  E  M  Q  :  V  G  A  H  Y  F  E  E  G  N  V  Q  L  D  A  K  H  K  C  K  D  T  T  L  I  Q  :  S  P  D  D  S  A  I  S  L  V  N  I  I  R  H  H  E  T  E  Y  L  A  S  L  Q  :  T  S  Y  L  K  L  P  D  T  T  F  K  :  D  L  R  R  K  L  P  V  T  R  T  L  F  P  W  H  N  T  A  Q  F  S  L  T  R  D  I  E  K  E  L  R  I  G  K  *  K  H  C  M  S  F  Y  T  S  *  I  C  T  Q  Y  T  P  F  L  I  *  Q  A  S  L  Y  L  R  L  P  S  P  A  I  C  C  L  L  S  I  V  F  L  *  E  R  K </second_frame>
            <third_frame>   L  S  S  S  L  L  F  *  K  T  F  L  L  S  M  E  K  S  R  F  I  L  L  P  S  F  G  D  G  N  S  S  *  I  C  S  Y  E  Q  K   : D  A  R  C  V  E  I  S  E  V  V  C  S  G  C  F  F  G  L  Q  C  L  L  K  F  V  K  L  A  S  P  N  T  S  L  V  S  Y  F  L  Y  T  N  W  L  :  A  H  V  R  A  S  H  G  H  T  T  S  S  N  K  R  E  G  K  A  T  L  V  G  L  M  V  S  S  S  N  L  N  *  I  E  F  N  G  E  E  Y  L  L  I  R  L  Q  K  I  N  D  K  N  V  R  R  R  R  R  F  P  G  I  R  N  T  T  Y  *  *  P  E  N  *  D  C  Q  M  V  P  S  *  C  P  S  R  R  N  S  V  R  R  Q  R :   C  *  S  Y  F  K  G  R  K  Y  I  *  E  S  G  R  G  V  I  S  F  V  Q  Q  I  S  L  D  L  S  R  I  P  K  Q  K  W  R   : C  T  D  Y  I  I  *  *  G  S  *  G  *  V  S  *  S  P  D  C  A  G  C  Q  S  *  P  C  Q  A   : S  L  *  R  R  *  A  S  K  R  *  R  T  S  I  C  F  R  G  R  V  *  :  V  C  H  G  C  *  N  Y  E  V  C  E  *  N  I  S  K  R  H  L  F  S  L  L  Y  E  G  K  G  C  G  R  A  R  I  *  L  *  T  C  C  G  D  F  S  C  *  A  *  S  S  E  F  L  :  K  L  I  L  Y  A  S  F  V  A  M  E  A  G  D  Q  Y  G  I  L  N  L  R  T  I  F  N  L  *  K  *  E  A  R  C  R :   L  A  P  I  T  L  K  R  E  M  Y  S  *  M  Q  N  T  N  V  R  I  Q  R  *  F  S :   P  Q  M  I  L  Q  F  P  W  S  T  L  F  A  T  M  R  L  S  I  W  L  L  F  R :   H  L  T  *  N  C  L  I  P  L  S  R :   T  C  G  G  S  F  P  L  L  V  H  C  S  H  G  T  T  L  H  N  L  A  L  L  E  I  L  K  K  N  F  E  L  E  N  R  N  I  A  C  L  F  I  Q  V  E  Y  V  H  S  T  H  H  S  *  Y  D  K  R  V  Y  T  *  D  C  R  L  R  L  F  V  A  F  F  L  L  Y  S  F  E  R  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0076N09.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52720" stop="52588"/>
                    <exon start="52427" stop="52312"/>
                    <exon start="51575" stop="51486"/>
                    <exon start="50207" stop="50143"/>
                    <exon start="49268" stop="48841"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>564</number_coding_nucleotides>
                  <number_encoded_amino_acids>188</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MIKMLEEDEDFLESETQLTDDQKIEIAKWFLLNAPAGEIQYVAKDVRAILKDENIYKKAAEESFPSYNKSHLICLEFPNRSGDVLITSFSEVHKDEYLDPRTAQVARVDHVKQVCKDVRPARDEELPSAFVEEYRSAMDAEIMKYVSETYPKGICSVYCTKGKDVEEPGFDFELVVVISAARHSPQNF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0076N09.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55958" stop="55937"/>
                    <exon start="53184" stop="53051"/>
                    <exon start="52871" stop="52770"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>255</number_coding_nucleotides>
                  <number_encoded_amino_acids>85</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ICSYEQKDARCVEISEVVCSGCFFGLQCLLKFVKLASPNTSLVSYFLYTNWLAHVRASHGHTTSSNKREGKATLVGLMVSSSNLN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="53463" e_stop="52588"/>
            <exon e_start="52427" e_stop="52312"/>
            <exon e_start="51575" e_stop="51486"/>
            <exon e_start="50207" e_stop="50143"/>
            <exon e_start="49268" e_stop="49107"/>
            <exon e_start="48813" e_stop="48735"/>
            <exon e_start="48490" e_stop="48413"/>
            <exon e_start="47348" e_stop="47274"/>
            <exon e_start="47119" e_stop="47084"/>
            <exon e_start="46991" e_stop="46729"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.985" e_score="0.993"/>
          <exon-intron don_prob="0.998" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.996" e_score="0.978"/>
          <exon-intron don_prob="0.981" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.770" acc_prob="0.803" e_score="0.988"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="0.975"/>
          <exon-intron don_prob="1.000" acc_prob="0.991" e_score="0.974"/>
          <exon-intron don_prob="0.881" acc_prob="0.186" e_score="1.000"/>
          <exon-intron don_prob="0.920" acc_prob="0.809" e_score="1.000"/>
          <exon-only e_score="0.871"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="53463" e_stop="52588" e_length="876"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.985">
            <gDNA_intron_boundary i_start="52587" i_stop="52428" i_length="160"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="52427" e_stop="52312" e_length="116"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.990">
            <gDNA_intron_boundary i_start="52311" i_stop="51576" i_length="736"/>
          </intron>
          <exon e_serial="3" e_score="0.978">
            <gDNA_exon_boundary e_start="51575" e_stop="51486" e_length="90"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.996">
            <gDNA_intron_boundary i_start="51485" i_stop="50208" i_length="1278"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="50207" e_stop="50143" e_length="65"/>
          </exon>
          <intron i_serial="4" don_prob="0.981" acc_prob="0.998">
            <gDNA_intron_boundary i_start="50142" i_stop="49269" i_length="874"/>
          </intron>
          <exon e_serial="5" e_score="0.988">
            <gDNA_exon_boundary e_start="49268" e_stop="49107" e_length="162"/>
          </exon>
          <intron i_serial="5" don_prob="0.770" acc_prob="0.803">
            <gDNA_intron_boundary i_start="49106" i_stop="48814" i_length="293"/>
          </intron>
          <exon e_serial="6" e_score="0.975">
            <gDNA_exon_boundary e_start="48813" e_stop="48735" e_length="79"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="48734" i_stop="48491" i_length="244"/>
          </intron>
          <exon e_serial="7" e_score="0.974">
            <gDNA_exon_boundary e_start="48490" e_stop="48413" e_length="78"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="48412" i_stop="47349" i_length="1064"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="47348" e_stop="47274" e_length="75"/>
          </exon>
          <intron i_serial="8" don_prob="0.881" acc_prob="0.186">
            <gDNA_intron_boundary i_start="47273" i_stop="47120" i_length="154"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="47119" e_stop="47084" e_length="36"/>
          </exon>
          <intron i_serial="9" don_prob="0.920" acc_prob="0.809">
            <gDNA_intron_boundary i_start="47083" i_stop="46992" i_length="92"/>
          </intron>
          <exon e_serial="10" e_score="0.871">
            <gDNA_exon_boundary e_start="46991" e_stop="46729" e_length="263"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53463" stop="52718"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542196" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53002" stop="52588"/>
              <exon start="52427" stop="52312"/>
              <exon start="51575" stop="51527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211635" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52984" stop="52588"/>
              <exon start="52427" stop="52400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52829" stop="52588"/>
              <exon start="52427" stop="52312"/>
              <exon start="51575" stop="51486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313375" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52829" stop="52617"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313374" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52809" stop="52588"/>
              <exon start="52427" stop="52312"/>
              <exon start="51575" stop="51486"/>
              <exon start="50207" stop="50143"/>
              <exon start="49268" stop="49107"/>
              <exon start="48813" stop="48735"/>
              <exon start="48490" stop="48453"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323287" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52809" stop="52588"/>
              <exon start="52427" stop="52312"/>
              <exon start="51575" stop="51486"/>
              <exon start="50207" stop="50143"/>
              <exon start="49268" stop="49189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321831" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52747" stop="52588"/>
              <exon start="52427" stop="52312"/>
              <exon start="51575" stop="51486"/>
              <exon start="50207" stop="50143"/>
              <exon start="49268" stop="49133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331357" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52685" stop="52588"/>
              <exon start="52427" stop="52312"/>
              <exon start="51575" stop="51486"/>
              <exon start="50207" stop="50143"/>
              <exon start="49268" stop="49225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469535" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52683" stop="52588"/>
              <exon start="52427" stop="52312"/>
              <exon start="51575" stop="51486"/>
              <exon start="50207" stop="50143"/>
              <exon start="49268" stop="49133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697392" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52592" stop="52588"/>
              <exon start="52427" stop="52312"/>
              <exon start="51575" stop="51486"/>
              <exon start="50207" stop="50143"/>
              <exon start="49268" stop="49107"/>
              <exon start="48813" stop="48735"/>
              <exon start="48490" stop="48413"/>
              <exon start="47348" stop="47274"/>
              <exon start="47119" stop="47090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464565" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50185" stop="50143"/>
              <exon start="49268" stop="49107"/>
              <exon start="48813" stop="48735"/>
              <exon start="48490" stop="48413"/>
              <exon start="47348" stop="47274"/>
              <exon start="47119" stop="47084"/>
              <exon start="46991" stop="46729"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697780" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATGCGGGTAAGTTATTAGTGCCTTACTATAGGCAACCTTTTCGGCATTCAATTAGTGTTTGATAGATGACTACCAGATTTTGTTTTGCAAGTTTCAGAATGAGCTGTCTTTGTTTCAATTTTACTTCTTTATGATTAATCCTCTTCTTTCGTCTTCAAATATTGATATATTACGCATCCGTTGACGGTCATCATCACGTACTTCTTGTGCTAGAAGAATTAGAGTTTGATGTGTCATTACACACTTGATAATGTTCGAATCGTACTTTGTAATGGCAGATGCAAGGTGTGTTGAAATTTCTGAAGTTGTCTGCTCCGGATGCTTCTTTGGTTTGCAATGTCTGTTGAAATTTGTGAAGTTGGCTTCTCCAAATACTTCTCTGGTTTCTTATTTTTTATACACTAATTGGCTGGTTAGTAGTGAACTAACTTTAAGATAATTTTATGATTTTTCTTTATGGGAAAAGAGTGAATAGCTCTTTAGCTTTCAAATCTGACTTAGACTTCTTCAGACATTCTTTGATGTGTATTTCATCTTTATATTCTCCTTATCTTTTATCAAATTAAACGATATAACAAACAACAATGTCAGGCACATGTCCGTGCCTCGCACGGGCACACTACATCTAGTAACAAAAGAGAGGGGAAAGCGACTCTGGTGGGGTTGATGGTATCTTCTTCGAATTTGAATTGAATTGAATTCAATGGAGAAGAATATCTGTTAATAAGATTGCAAAAAATAAATGATAAAAATGTTAGAAGAAGACGAAGATTTCCTGGAATCAGAAACACAACTTACTGATGACCAGAAAATTGAGATTGCCAAATGGTTCCTTCTTAATGCCCCAGCCGGCGAAATTCAGTACGTCGCCAAAG : ATGTTAGAGCTATTTTAAAGGACGAAAATATATATAAGAAAGCGGCCGAGGAGTCATTTCCTTCGTACAACAAATCTCACTTGATTTGTCTCGAATTCCCAAACAGAAGTGGCGAT : GTACTGATTACATCATTTAGTGAGGTTCATAAGGATGAGTATCTTGATCCCCGGACTGCGCAGGTTGCCAGAGTTGACCATGTCAAGCAA : GTTTGTAAAGACGTTAGGCCAGCAAGAGATGAAGAACTTCCATCTGCTTTCGTGGAAGAGTATAG : GTCTGCCATGGATGCTGAAATTATGAAGTATGTGAGTGAAACATATCCAAAAGGCATCTGTTCAGTTTACTGTACGAAGGGAAAGGATGTGGAAGAGCCAGGATTTGACTTTGAACTTGTTGTGGTGATTTCAGCTGCTAGGCATAGTCCTCAGAATTTCTG : CAATGGAAGCTGGCGATCAATATGGAATATTGAATTTAAGGACGATATTCAATCTGTAGAAGTGAGAGGCGAGATGCAG : GTTGGCGCCCATTACTTTGAAGAGGGAAATGTACAGCTAGATGCAAAACACAAATGTAAGGATACAACGCTAATTCAG : TCCCCAGATGATTCTGCAATTTCCTTGGTCAACATTATTCGCCACCATGAGACTGAGTATCTGGCTTCTCTTCAG : ACATCTTACTTGAAATTGCCTGATACCACTTTCAAG : GACTTGCGGAGGAAGCTTCCCGTTACTCGTACATTGTTCCCATGGCACAACACTGCACAATTTAGCCTTACTCGAGATATTGAAAAAGAACTTCGAATTGGAAAATAGAAACATTGCATGTCTTTTTATACAAGTTGAATATGTACACAGTACACACCATTCTTGATATGACAAGCGAGTTTATACTTGAGATTGCCGTCTCCGGCTATTTGTTGCCTTCTTTCTATTGTATTCCTTTGAGAGAGGAAAGTTCATGCTAATTT</gDNA_template>
            <first_frame> N  A  G  K  L  L  V  P  Y  Y  R  Q  P  F  R  H  S  I  S  V  *  *  M  T  T  R  F  C  F  A  S  F  R  M  S  C  L  C  F  N  F  T  S  L  *  L  I  L  F  F  R  L  Q  I  L  I  Y  Y  A  S  V  D  G  H  H  H  V  L  L  V  L  E  E  L  E  F  D  V  S  L  H  T  *  *  C  S  N  R  T  L  *  W  Q  M  Q  G  V  L  K  F  L  K  L  S  A  P  D  A  S  L  V  C  N  V  C  *  N  L  *  S  W  L  L  Q  I  L  L  W  F  L  I  F  Y  T  L  I  G  W  L  V  V  N  *  L  *  D  N  F  M  I  F  L  Y  G  K  R  V  N  S  S  L  A  F  K  S  D  L  D  F  F  R  H  S  L  M  C  I  S  S  L  Y  S  P  Y  L  L  S  N  *  T  I  *  Q  T  T  M  S  G  T  C  P  C  L  A  R  A  H  Y  I  *  *  Q  K  R  G  E  S  D  S  G  G  V  D  G  I  F  F  E  F  E  L  N  *  I  Q  W  R  R  I  S  V  N  K  I  A  K  N  K  *  *  K  C  *  K  K  T  K  I  S  W  N  Q  K  H  N  L  L  M  T  R  K  L  R  L  P  N  G  S  F  L  M  P  Q  P  A  K  F  S  T  S  P  K  :  M  L  E  L  F  *  R  T  K  I  Y  I  R  K  R  P  R  S  H  F  L  R  T  T  N  L  T  *  F  V  S  N  S  Q  T  E  V  A  M :   Y  *  L  H  H  L  V  R  F  I  R  M  S  I  L  I  P  G  L  R  R  L  P  E  L  T  M  S  S  K :   F  V  K  T  L  G  Q  Q  E  M  K  N  F  H  L  L  S  W  K  S  I   : G  L  P  W  M  L  K  L  *  S  M  *  V  K  H  I  Q  K  A  S  V  Q  F  T  V  R  R  E  R  M  W  K  S  Q  D  L  T  L  N  L  L  W  *  F  Q  L  L  G  I  V  L  R  I  S   : A  M  E  A  G  D  Q  Y  G  I  L  N  L  R  T  I  F  N  L  *  K  *  E  A  R  C  R :   L  A  P  I  T  L  K  R  E  M  Y  S  *  M  Q  N  T  N  V  R  I  Q  R  *  F  S :   P  Q  M  I  L  Q  F  P  W  S  T  L  F  A  T  M  R  L  S  I  W  L  L  F  R :   H  L  T  *  N  C  L  I  P  L  S  R :   T  C  G  G  S  F  P  L  L  V  H  C  S  H  G  T  T  L  H  N  L  A  L  L  E  I  L  K  K  N  F  E  L  E  N  R  N  I  A  C  L  F  I  Q  V  E  Y  V  H  S  T  H  H  S  *  Y  D  K  R  V  Y  T  *  D  C  R  L  R  L  F  V  A  F  F  L  L  Y  S  F  E  R  G  K  F  M  L  I  </first_frame>
            <second_frame>  M  R  V  S  Y  *  C  L  T  I  G  N  L  F  G  I  Q  L  V  F  D  R  *  L  P  D  F  V  L  Q  V  S  E  *  A  V  F  V  S  I  L  L  L  Y  D  *  S  S  S  F  V  F  K  Y  *  Y  I  T  H  P  L  T  V  I  I  T  Y  F  L  C  *  K  N  *  S  L  M  C  H  Y  T  L  D  N  V  R  I  V  L  C  N  G  R  C  K  V  C  *  N  F  *  S  C  L  L  R  M  L  L  W  F  A  M  S  V  E  I  C  E  V  G  F  S  K  Y  F  S  G  F  L  F  F  I  H  *  L  A  G  *  *  *  T  N  F  K  I  I  L  *  F  F  F  M  G  K  E  *  I  A  L  *  L  S  N  L  T  *  T  S  S  D  I  L  *  C  V  F  H  L  Y  I  L  L  I  F  Y  Q  I  K  R  Y  N  K  Q  Q  C  Q  A  H  V  R  A  S  H  G  H  T  T  S  S  N  K  R  E  G  K  A  T  L  V  G  L  M  V  S  S  S  N  L  N  *  I  E  F  N  G  E  E  Y  L  L  I  R  L  Q  K  I  N  D  K  N  V  R  R  R  R  R  F  P  G  I  R  N  T  T  Y  *  *  P  E  N  *  D  C  Q  M  V  P  S  *  C  P  S  R  R  N  S  V  R  R  Q  R :   C  *  S  Y  F  K  G  R  K  Y  I  *  E  S  G  R  G  V  I  S  F  V  Q  Q  I  S  L  D  L  S  R  I  P  K  Q  K  W  R   : C  T  D  Y  I  I  *  *  G  S  *  G  *  V  S  *  S  P  D  C  A  G  C  Q  S  *  P  C  Q  A   : S  L  *  R  R  *  A  S  K  R  *  R  T  S  I  C  F  R  G  R  V  *  :  V  C  H  G  C  *  N  Y  E  V  C  E  *  N  I  S  K  R  H  L  F  S  L  L  Y  E  G  K  G  C  G  R  A  R  I  *  L  *  T  C  C  G  D  F  S  C  *  A  *  S  S  E  F  L  :  Q  W  K  L  A  I  N  M  E  Y  *  I  *  G  R  Y  S  I  C  R  S  E  R  R  D  A   : G  W  R  P  L  L  *  R  G  K  C  T  A  R  C  K  T  Q  M  *  G  Y  N  A  N  S   : V  P  R  *  F  C  N  F  L  G  Q  H  Y  S  P  P  *  D  *  V  S  G  F  S  S   : D  I  L  L  E  I  A  *  Y  H  F  Q   : G  L  A  E  E  A  S  R  Y  S  Y  I  V  P  M  A  Q  H  C  T  I  *  P  Y  S  R  Y  *  K  R  T  S  N  W  K  I  E  T  L  H  V  F  L  Y  K  L  N  M  Y  T  V  H  T  I  L  D  M  T  S  E  F  I  L  E  I  A  V  S  G  Y  L  L  P  S  F  Y  C  I  P  L  R  E  E  S  S  C  *  F </second_frame>
            <third_frame>   C  G  *  V  I  S  A  L  L  *  A  T  F  S  A  F  N  *  C  L  I  D  D  Y  Q  I  L  F  C  K  F  Q  N  E  L  S  L  F  Q  F  Y  F  F  M  I  N  P  L  L  S  S  S  N  I  D  I  L  R  I  R  *  R  S  S  S  R  T  S  C  A  R  R  I  R  V  *  C  V  I  T  H  L  I  M  F  E  S  Y  F  V  M  A  D  A  R  C  V  E  I  S  E  V  V  C  S  G  C  F  F  G  L  Q  C  L  L  K  F  V  K  L  A  S  P  N  T  S  L  V  S  Y  F  L  Y  T  N  W  L  V  S  S  E  L  T  L  R  *  F  Y  D  F  S  L  W  E  K  S  E  *  L  F  S  F  Q  I  *  L  R  L  L  Q  T  F  F  D  V  Y  F  I  F  I  F  S  L  S  F  I  K  L  N  D  I  T  N  N  N  V  R  H  M  S  V  P  R  T  G  T  L  H  L  V  T  K  E  R  G  K  R  L  W  W  G  *  W  Y  L  L  R  I  *  I  E  L  N  S  M  E  K  N  I  C  *  *  D  C  K  K  *  M  I  K  M  L  E  E  D  E  D  F  L  E  S  E  T  Q  L  T  D  D  Q  K  I  E  I  A  K  W  F  L  L  N  A  P  A  G  E  I  Q  Y  V  A  K   : D  V  R  A  I  L  K  D  E  N  I  Y  K  K  A  A  E  E  S  F  P  S  Y  N  K  S  H  L  I  C  L  E  F  P  N  R  S  G  D  :  V  L  I  T  S  F  S  E  V  H  K  D  E  Y  L  D  P  R  T  A  Q  V  A  R  V  D  H  V  K  Q  :  V  C  K  D  V  R  P  A  R  D  E  E  L  P  S  A  F  V  E  E  Y  R :   S  A  M  D  A  E  I  M  K  Y  V  S  E  T  Y  P  K  G  I  C  S  V  Y  C  T  K  G  K  D  V  E  E  P  G  F  D  F  E  L  V  V  V  I  S  A  A  R  H  S  P  Q  N  F  C :   N  G  S  W  R  S  I  W  N  I  E  F  K  D  D  I  Q  S  V  E  V  R  G  E  M  Q  :  V  G  A  H  Y  F  E  E  G  N  V  Q  L  D  A  K  H  K  C  K  D  T  T  L  I  Q  :  S  P  D  D  S  A  I  S  L  V  N  I  I  R  H  H  E  T  E  Y  L  A  S  L  Q  :  T  S  Y  L  K  L  P  D  T  T  F  K  :  D  L  R  R  K  L  P  V  T  R  T  L  F  P  W  H  N  T  A  Q  F  S  L  T  R  D  I  E  K  E  L  R  I  G  K  *  K  H  C  M  S  F  Y  T  S  *  I  C  T  Q  Y  T  P  F  L  I  *  Q  A  S  L  Y  L  R  L  P  S  P  A  I  C  C  L  L  S  I  V  F  L  *  E  R  K  V  H  A  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0076N09.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52720" stop="52588"/>
                    <exon start="52427" stop="52312"/>
                    <exon start="51575" stop="51486"/>
                    <exon start="50207" stop="50143"/>
                    <exon start="49268" stop="49107"/>
                    <exon start="48813" stop="48735"/>
                    <exon start="48490" stop="48413"/>
                    <exon start="47348" stop="47274"/>
                    <exon start="47119" stop="47084"/>
                    <exon start="46991" stop="46884"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>939</number_coding_nucleotides>
                  <number_encoded_amino_acids>313</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MIKMLEEDEDFLESETQLTDDQKIEIAKWFLLNAPAGEIQYVAKDVRAILKDENIYKKAAEESFPSYNKSHLICLEFPNRSGDVLITSFSEVHKDEYLDPRTAQVARVDHVKQVCKDVRPARDEELPSAFVEEYRSAMDAEIMKYVSETYPKGICSVYCTKGKDVEEPGFDFELVVVISAARHSPQNFCNGSWRSIWNIEFKDDIQSVEVRGEMQVGAHYFEEGNVQLDAKHKCKDTTLIQSPDDSAISLVNIIRHHETEYLASLQTSYLKLPDTTFKDLRRKLPVTRTLFPWHNTAQFSLTRDIEKELRIGK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0076N09.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53233" stop="53024"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CVITHLIMFESYFVMADARCVEISEVVCSGCFFGLQCLLKFVKLASPNTSLVSYFLYTNWLVSSELTLR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="56102" e_stop="55937"/>
            <exon e_start="52871" e_stop="52588"/>
            <exon e_start="52427" e_stop="52312"/>
            <exon e_start="51575" e_stop="51486"/>
            <exon e_start="50207" e_stop="50143"/>
            <exon e_start="49268" e_stop="49107"/>
            <exon e_start="48813" e_stop="48735"/>
            <exon e_start="48490" e_stop="48413"/>
            <exon e_start="47348" e_stop="47274"/>
            <exon e_start="47119" e_stop="47084"/>
            <exon e_start="46991" e_stop="46729"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.972" acc_prob="0.912" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.996" e_score="0.978"/>
          <exon-intron don_prob="0.981" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.770" acc_prob="0.803" e_score="0.988"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="0.975"/>
          <exon-intron don_prob="1.000" acc_prob="0.991" e_score="0.974"/>
          <exon-intron don_prob="0.881" acc_prob="0.186" e_score="1.000"/>
          <exon-intron don_prob="0.920" acc_prob="0.809" e_score="1.000"/>
          <exon-only e_score="0.871"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="56102" e_stop="55937" e_length="166"/>
          </exon>
          <intron i_serial="1" don_prob="0.972" acc_prob="0.912">
            <gDNA_intron_boundary i_start="55936" i_stop="52872" i_length="3065"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="52871" e_stop="52588" e_length="284"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.985">
            <gDNA_intron_boundary i_start="52587" i_stop="52428" i_length="160"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="52427" e_stop="52312" e_length="116"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.990">
            <gDNA_intron_boundary i_start="52311" i_stop="51576" i_length="736"/>
          </intron>
          <exon e_serial="4" e_score="0.978">
            <gDNA_exon_boundary e_start="51575" e_stop="51486" e_length="90"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.996">
            <gDNA_intron_boundary i_start="51485" i_stop="50208" i_length="1278"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="50207" e_stop="50143" e_length="65"/>
          </exon>
          <intron i_serial="5" don_prob="0.981" acc_prob="0.998">
            <gDNA_intron_boundary i_start="50142" i_stop="49269" i_length="874"/>
          </intron>
          <exon e_serial="6" e_score="0.988">
            <gDNA_exon_boundary e_start="49268" e_stop="49107" e_length="162"/>
          </exon>
          <intron i_serial="6" don_prob="0.770" acc_prob="0.803">
            <gDNA_intron_boundary i_start="49106" i_stop="48814" i_length="293"/>
          </intron>
          <exon e_serial="7" e_score="0.975">
            <gDNA_exon_boundary e_start="48813" e_stop="48735" e_length="79"/>
          </exon>
          <intron i_serial="7" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="48734" i_stop="48491" i_length="244"/>
          </intron>
          <exon e_serial="8" e_score="0.974">
            <gDNA_exon_boundary e_start="48490" e_stop="48413" e_length="78"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="48412" i_stop="47349" i_length="1064"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="47348" e_stop="47274" e_length="75"/>
          </exon>
          <intron i_serial="9" don_prob="0.881" acc_prob="0.186">
            <gDNA_intron_boundary i_start="47273" i_stop="47120" i_length="154"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="47119" e_stop="47084" e_length="36"/>
          </exon>
          <intron i_serial="10" don_prob="0.920" acc_prob="0.809">
            <gDNA_intron_boundary i_start="47083" i_stop="46992" i_length="92"/>
          </intron>
          <exon e_serial="11" e_score="0.871">
            <gDNA_exon_boundary e_start="46991" e_stop="46729" e_length="263"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56102" stop="55937"/>
              <exon start="52871" stop="52588"/>
              <exon start="52427" stop="52331"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331596" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52829" stop="52588"/>
              <exon start="52427" stop="52312"/>
              <exon start="51575" stop="51486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313375" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52829" stop="52617"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313374" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52809" stop="52588"/>
              <exon start="52427" stop="52312"/>
              <exon start="51575" stop="51486"/>
              <exon start="50207" stop="50143"/>
              <exon start="49268" stop="49107"/>
              <exon start="48813" stop="48735"/>
              <exon start="48490" stop="48453"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323287" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52809" stop="52588"/>
              <exon start="52427" stop="52312"/>
              <exon start="51575" stop="51486"/>
              <exon start="50207" stop="50143"/>
              <exon start="49268" stop="49189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321831" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52747" stop="52588"/>
              <exon start="52427" stop="52312"/>
              <exon start="51575" stop="51486"/>
              <exon start="50207" stop="50143"/>
              <exon start="49268" stop="49133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331357" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52685" stop="52588"/>
              <exon start="52427" stop="52312"/>
              <exon start="51575" stop="51486"/>
              <exon start="50207" stop="50143"/>
              <exon start="49268" stop="49225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469535" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52683" stop="52588"/>
              <exon start="52427" stop="52312"/>
              <exon start="51575" stop="51486"/>
              <exon start="50207" stop="50143"/>
              <exon start="49268" stop="49133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697392" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52592" stop="52588"/>
              <exon start="52427" stop="52312"/>
              <exon start="51575" stop="51486"/>
              <exon start="50207" stop="50143"/>
              <exon start="49268" stop="49107"/>
              <exon start="48813" stop="48735"/>
              <exon start="48490" stop="48413"/>
              <exon start="47348" stop="47274"/>
              <exon start="47119" stop="47090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464565" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50185" stop="50143"/>
              <exon start="49268" stop="49107"/>
              <exon start="48813" stop="48735"/>
              <exon start="48490" stop="48413"/>
              <exon start="47348" stop="47274"/>
              <exon start="47119" stop="47084"/>
              <exon start="46991" stop="46729"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697780" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTATTTGACCTTTCCCTTAATTTTCTCTTCTTTCTCTGCGATCTTTTATCTTCCTCTTTGTTATTCTGAAAAACTTTCTTACTTTCCATGGAAAAAAGTAGATTCATTCTTCTGCCCAGTTTCGGAGACGGAAATTCCTCATAGATTTGCTCCTACGAACAAAAAG : GCACATGTCCGTGCCTCGCACGGGCACACTACATCTAGTAACAAAAGAGAGGGGAAAGCGACTCTGGTGGGGTTGATGGTATCTTCTTCGAATTTGAATTGAATTGAATTCAATGGAGAAGAATATCTGTTAATAAGATTGCAAAAAATAAATGATAAAAATGTTAGAAGAAGACGAAGATTTCCTGGAATCAGAAACACAACTTACTGATGACCAGAAAATTGAGATTGCCAAATGGTTCCTTCTTAATGCCCCAGCCGGCGAAATTCAGTACGTCGCCAAAG : ATGTTAGAGCTATTTTAAAGGACGAAAATATATATAAGAAAGCGGCCGAGGAGTCATTTCCTTCGTACAACAAATCTCACTTGATTTGTCTCGAATTCCCAAACAGAAGTGGCGAT : GTACTGATTACATCATTTAGTGAGGTTCATAAGGATGAGTATCTTGATCCCCGGACTGCGCAGGTTGCCAGAGTTGACCATGTCAAGCAA : GTTTGTAAAGACGTTAGGCCAGCAAGAGATGAAGAACTTCCATCTGCTTTCGTGGAAGAGTATAG : GTCTGCCATGGATGCTGAAATTATGAAGTATGTGAGTGAAACATATCCAAAAGGCATCTGTTCAGTTTACTGTACGAAGGGAAAGGATGTGGAAGAGCCAGGATTTGACTTTGAACTTGTTGTGGTGATTTCAGCTGCTAGGCATAGTCCTCAGAATTTCTG : CAATGGAAGCTGGCGATCAATATGGAATATTGAATTTAAGGACGATATTCAATCTGTAGAAGTGAGAGGCGAGATGCAG : GTTGGCGCCCATTACTTTGAAGAGGGAAATGTACAGCTAGATGCAAAACACAAATGTAAGGATACAACGCTAATTCAG : TCCCCAGATGATTCTGCAATTTCCTTGGTCAACATTATTCGCCACCATGAGACTGAGTATCTGGCTTCTCTTCAG : ACATCTTACTTGAAATTGCCTGATACCACTTTCAAG : GACTTGCGGAGGAAGCTTCCCGTTACTCGTACATTGTTCCCATGGCACAACACTGCACAATTTAGCCTTACTCGAGATATTGAAAAAGAACTTCGAATTGGAAAATAGAAACATTGCATGTCTTTTTATACAAGTTGAATATGTACACAGTACACACCATTCTTGATATGACAAGCGAGTTTATACTTGAGATTGCCGTCTCCGGCTATTTGTTGCCTTCTTTCTATTGTATTCCTTTGAGAGAGGAAAGTTCATGCTAATTT</gDNA_template>
            <first_frame> L  F  D  L  S  L  N  F  L  F  F  L  C  D  L  L  S  S  S  L  L  F  *  K  T  F  L  L  S  M  E  K  S  R  F  I  L  L  P  S  F  G  D  G  N  S  S  *  I  C  S  Y  E  Q  K   : G  T  C  P  C  L  A  R  A  H  Y  I  *  *  Q  K  R  G  E  S  D  S  G  G  V  D  G  I  F  F  E  F  E  L  N  *  I  Q  W  R  R  I  S  V  N  K  I  A  K  N  K  *  *  K  C  *  K  K  T  K  I  S  W  N  Q  K  H  N  L  L  M  T  R  K  L  R  L  P  N  G  S  F  L  M  P  Q  P  A  K  F  S  T  S  P  K  :  M  L  E  L  F  *  R  T  K  I  Y  I  R  K  R  P  R  S  H  F  L  R  T  T  N  L  T  *  F  V  S  N  S  Q  T  E  V  A  M :   Y  *  L  H  H  L  V  R  F  I  R  M  S  I  L  I  P  G  L  R  R  L  P  E  L  T  M  S  S  K :   F  V  K  T  L  G  Q  Q  E  M  K  N  F  H  L  L  S  W  K  S  I   : G  L  P  W  M  L  K  L  *  S  M  *  V  K  H  I  Q  K  A  S  V  Q  F  T  V  R  R  E  R  M  W  K  S  Q  D  L  T  L  N  L  L  W  *  F  Q  L  L  G  I  V  L  R  I  S   : A  M  E  A  G  D  Q  Y  G  I  L  N  L  R  T  I  F  N  L  *  K  *  E  A  R  C  R :   L  A  P  I  T  L  K  R  E  M  Y  S  *  M  Q  N  T  N  V  R  I  Q  R  *  F  S :   P  Q  M  I  L  Q  F  P  W  S  T  L  F  A  T  M  R  L  S  I  W  L  L  F  R :   H  L  T  *  N  C  L  I  P  L  S  R :   T  C  G  G  S  F  P  L  L  V  H  C  S  H  G  T  T  L  H  N  L  A  L  L  E  I  L  K  K  N  F  E  L  E  N  R  N  I  A  C  L  F  I  Q  V  E  Y  V  H  S  T  H  H  S  *  Y  D  K  R  V  Y  T  *  D  C  R  L  R  L  F  V  A  F  F  L  L  Y  S  F  E  R  G  K  F  M  L  I  </first_frame>
            <second_frame>  Y  L  T  F  P  L  I  F  S  S  F  S  A  I  F  Y  L  P  L  C  Y  S  E  K  L  S  Y  F  P  W  K  K  V  D  S  F  F  C  P  V  S  E  T  E  I  P  H  R  F  A  P  T  N  K  K  :  A  H  V  R  A  S  H  G  H  T  T  S  S  N  K  R  E  G  K  A  T  L  V  G  L  M  V  S  S  S  N  L  N  *  I  E  F  N  G  E  E  Y  L  L  I  R  L  Q  K  I  N  D  K  N  V  R  R  R  R  R  F  P  G  I  R  N  T  T  Y  *  *  P  E  N  *  D  C  Q  M  V  P  S  *  C  P  S  R  R  N  S  V  R  R  Q  R :   C  *  S  Y  F  K  G  R  K  Y  I  *  E  S  G  R  G  V  I  S  F  V  Q  Q  I  S  L  D  L  S  R  I  P  K  Q  K  W  R   : C  T  D  Y  I  I  *  *  G  S  *  G  *  V  S  *  S  P  D  C  A  G  C  Q  S  *  P  C  Q  A   : S  L  *  R  R  *  A  S  K  R  *  R  T  S  I  C  F  R  G  R  V  *  :  V  C  H  G  C  *  N  Y  E  V  C  E  *  N  I  S  K  R  H  L  F  S  L  L  Y  E  G  K  G  C  G  R  A  R  I  *  L  *  T  C  C  G  D  F  S  C  *  A  *  S  S  E  F  L  :  Q  W  K  L  A  I  N  M  E  Y  *  I  *  G  R  Y  S  I  C  R  S  E  R  R  D  A   : G  W  R  P  L  L  *  R  G  K  C  T  A  R  C  K  T  Q  M  *  G  Y  N  A  N  S   : V  P  R  *  F  C  N  F  L  G  Q  H  Y  S  P  P  *  D  *  V  S  G  F  S  S   : D  I  L  L  E  I  A  *  Y  H  F  Q   : G  L  A  E  E  A  S  R  Y  S  Y  I  V  P  M  A  Q  H  C  T  I  *  P  Y  S  R  Y  *  K  R  T  S  N  W  K  I  E  T  L  H  V  F  L  Y  K  L  N  M  Y  T  V  H  T  I  L  D  M  T  S  E  F  I  L  E  I  A  V  S  G  Y  L  L  P  S  F  Y  C  I  P  L  R  E  E  S  S  C  *  F </second_frame>
            <third_frame>   I  *  P  F  P  *  F  S  L  L  S  L  R  S  F  I  F  L  F  V  I  L  K  N  F  L  T  F  H  G  K  K  *  I  H  S  S  A  Q  F  R  R  R  K  F  L  I  D  L  L  L  R  T  K  R :   H  M  S  V  P  R  T  G  T  L  H  L  V  T  K  E  R  G  K  R  L  W  W  G  *  W  Y  L  L  R  I  *  I  E  L  N  S  M  E  K  N  I  C  *  *  D  C  K  K  *  M  I  K  M  L  E  E  D  E  D  F  L  E  S  E  T  Q  L  T  D  D  Q  K  I  E  I  A  K  W  F  L  L  N  A  P  A  G  E  I  Q  Y  V  A  K   : D  V  R  A  I  L  K  D  E  N  I  Y  K  K  A  A  E  E  S  F  P  S  Y  N  K  S  H  L  I  C  L  E  F  P  N  R  S  G  D  :  V  L  I  T  S  F  S  E  V  H  K  D  E  Y  L  D  P  R  T  A  Q  V  A  R  V  D  H  V  K  Q  :  V  C  K  D  V  R  P  A  R  D  E  E  L  P  S  A  F  V  E  E  Y  R :   S  A  M  D  A  E  I  M  K  Y  V  S  E  T  Y  P  K  G  I  C  S  V  Y  C  T  K  G  K  D  V  E  E  P  G  F  D  F  E  L  V  V  V  I  S  A  A  R  H  S  P  Q  N  F  C :   N  G  S  W  R  S  I  W  N  I  E  F  K  D  D  I  Q  S  V  E  V  R  G  E  M  Q  :  V  G  A  H  Y  F  E  E  G  N  V  Q  L  D  A  K  H  K  C  K  D  T  T  L  I  Q  :  S  P  D  D  S  A  I  S  L  V  N  I  I  R  H  H  E  T  E  Y  L  A  S  L  Q  :  T  S  Y  L  K  L  P  D  T  T  F  K  :  D  L  R  R  K  L  P  V  T  R  T  L  F  P  W  H  N  T  A  Q  F  S  L  T  R  D  I  E  K  E  L  R  I  G  K  *  K  H  C  M  S  F  Y  T  S  *  I  C  T  Q  Y  T  P  F  L  I  *  Q  A  S  L  Y  L  R  L  P  S  P  A  I  C  C  L  L  S  I  V  F  L  *  E  R  K  V  H  A  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0076N09.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52720" stop="52588"/>
                    <exon start="52427" stop="52312"/>
                    <exon start="51575" stop="51486"/>
                    <exon start="50207" stop="50143"/>
                    <exon start="49268" stop="49107"/>
                    <exon start="48813" stop="48735"/>
                    <exon start="48490" stop="48413"/>
                    <exon start="47348" stop="47274"/>
                    <exon start="47119" stop="47084"/>
                    <exon start="46991" stop="46884"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>939</number_coding_nucleotides>
                  <number_encoded_amino_acids>313</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MIKMLEEDEDFLESETQLTDDQKIEIAKWFLLNAPAGEIQYVAKDVRAILKDENIYKKAAEESFPSYNKSHLICLEFPNRSGDVLITSFSEVHKDEYLDPRTAQVARVDHVKQVCKDVRPARDEELPSAFVEEYRSAMDAEIMKYVSETYPKGICSVYCTKGKDVEEPGFDFELVVVISAARHSPQNFCNGSWRSIWNIEFKDDIQSVEVRGEMQVGAHYFEEGNVQLDAKHKCKDTTLIQSPDDSAISLVNIIRHHETEYLASLQTSYLKLPDTTFKDLRRKLPVTRTLFPWHNTAQFSLTRDIEKELRIGK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0076N09.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56101" stop="55937"/>
                    <exon start="52871" stop="52770"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>264</number_coding_nucleotides>
                  <number_encoded_amino_acids>88</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YLTFPLIFSSFSAIFYLPLCYSEKLSYFPWKKVDSFFCPVSETEIPHRFAPTNKKAHVRASHGHTTSSNKREGKATLVGLMVSSSNLN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="56059" e_stop="55937"/>
            <exon e_start="53184" e_stop="53051"/>
            <exon e_start="52871" e_stop="52588"/>
            <exon e_start="52427" e_stop="52312"/>
            <exon e_start="52216" e_stop="52172"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.972" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.912" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.821" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="56059" e_stop="55937" e_length="123"/>
          </exon>
          <intron i_serial="1" don_prob="0.972" acc_prob="0.991">
            <gDNA_intron_boundary i_start="55936" i_stop="53185" i_length="2752"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="53184" e_stop="53051" e_length="134"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.912">
            <gDNA_intron_boundary i_start="53050" i_stop="52872" i_length="179"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="52871" e_stop="52588" e_length="284"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.985">
            <gDNA_intron_boundary i_start="52587" i_stop="52428" i_length="160"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="52427" e_stop="52312" e_length="116"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.821">
            <gDNA_intron_boundary i_start="52311" i_stop="52217" i_length="95"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="52216" e_stop="52172" e_length="45"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56059" stop="55937"/>
              <exon start="53184" stop="53051"/>
              <exon start="52871" stop="52664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337668" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56056" stop="55937"/>
              <exon start="53184" stop="53051"/>
              <exon start="52871" stop="52588"/>
              <exon start="52427" stop="52334"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56056" stop="55937"/>
              <exon start="53184" stop="53051"/>
              <exon start="52871" stop="52588"/>
              <exon start="52427" stop="52400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301158" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56036" stop="55937"/>
              <exon start="53184" stop="53051"/>
              <exon start="52871" stop="52595"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310166" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55993" stop="55937"/>
              <exon start="53184" stop="53051"/>
              <exon start="52871" stop="52588"/>
              <exon start="52427" stop="52312"/>
              <exon start="52216" stop="52172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55993" stop="55937"/>
              <exon start="53184" stop="53051"/>
              <exon start="52871" stop="52588"/>
              <exon start="52427" stop="52323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231819" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55993" stop="55937"/>
              <exon start="53184" stop="53051"/>
              <exon start="52871" stop="52588"/>
              <exon start="52427" stop="52373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242680" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55993" stop="55937"/>
              <exon start="53184" stop="53051"/>
              <exon start="52871" stop="52590"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236345" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52829" stop="52617"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313374" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTATCTTCCTCTTTGTTATTCTGAAAAACTTTCTTACTTTCCATGGAAAAAAGTAGATTCATTCTTCTGCCCAGTTTCGGAGACGGAAATTCCTCATAGATTTGCTCCTACGAACAAAAAG : ATGCAAGGTGTGTTGAAATTTCTGAAGTTGTCTGCTCCGGATGCTTCTTTGGTTTGCAATGTCTGTTGAAATTTGTGAAGTTGGCTTCTCCAAATACTTCTCTGGTTTCTTATTTTTTATACACTAATTGGCTG : GCACATGTCCGTGCCTCGCACGGGCACACTACATCTAGTAACAAAAGAGAGGGGAAAGCGACTCTGGTGGGGTTGATGGTATCTTCTTCGAATTTGAATTGAATTGAATTCAATGGAGAAGAATATCTGTTAATAAGATTGCAAAAAATAAATGATAAAAATGTTAGAAGAAGACGAAGATTTCCTGGAATCAGAAACACAACTTACTGATGACCAGAAAATTGAGATTGCCAAATGGTTCCTTCTTAATGCCCCAGCCGGCGAAATTCAGTACGTCGCCAAAG : ATGTTAGAGCTATTTTAAAGGACGAAAATATATATAAGAAAGCGGCCGAGGAGTCATTTCCTTCGTACAACAAATCTCACTTGATTTGTCTCGAATTCCCAAACAGAAGTGGCGAT : ATTTGACAGTTTTCCGTAGTCGAAGATTGAAATATTAAGTGAACT</gDNA_template>
            <first_frame> F  Y  L  P  L  C  Y  S  E  K  L  S  Y  F  P  W  K  K  V  D  S  F  F  C  P  V  S  E  T  E  I  P  H  R  F  A  P  T  N  K  K  :  M  Q  G  V  L  K  F  L  K  L  S  A  P  D  A  S  L  V  C  N  V  C  *  N  L  *  S  W  L  L  Q  I  L  L  W  F  L  I  F  Y  T  L  I  G  W :   H  M  S  V  P  R  T  G  T  L  H  L  V  T  K  E  R  G  K  R  L  W  W  G  *  W  Y  L  L  R  I  *  I  E  L  N  S  M  E  K  N  I  C  *  *  D  C  K  K  *  M  I  K  M  L  E  E  D  E  D  F  L  E  S  E  T  Q  L  T  D  D  Q  K  I  E  I  A  K  W  F  L  L  N  A  P  A  G  E  I  Q  Y  V  A  K   : D  V  R  A  I  L  K  D  E  N  I  Y  K  K  A  A  E  E  S  F  P  S  Y  N  K  S  H  L  I  C  L  E  F  P  N  R  S  G  D  :  I  *  Q  F  S  V  V  E  D  *  N  I  K  *  T </first_frame>
            <second_frame>  F  I  F  L  F  V  I  L  K  N  F  L  T  F  H  G  K  K  *  I  H  S  S  A  Q  F  R  R  R  K  F  L  I  D  L  L  L  R  T  K  R :   C  K  V  C  *  N  F  *  S  C  L  L  R  M  L  L  W  F  A  M  S  V  E  I  C  E  V  G  F  S  K  Y  F  S  G  F  L  F  F  I  H  *  L  A   : G  T  C  P  C  L  A  R  A  H  Y  I  *  *  Q  K  R  G  E  S  D  S  G  G  V  D  G  I  F  F  E  F  E  L  N  *  I  Q  W  R  R  I  S  V  N  K  I  A  K  N  K  *  *  K  C  *  K  K  T  K  I  S  W  N  Q  K  H  N  L  L  M  T  R  K  L  R  L  P  N  G  S  F  L  M  P  Q  P  A  K  F  S  T  S  P  K  :  M  L  E  L  F  *  R  T  K  I  Y  I  R  K  R  P  R  S  H  F  L  R  T  T  N  L  T  *  F  V  S  N  S  Q  T  E  V  A  I :   F  D  S  F  P  *  S  K  I  E  I  L  S  E   </second_frame>
            <third_frame>   L  S  S  S  L  L  F  *  K  T  F  L  L  S  M  E  K  S  R  F  I  L  L  P  S  F  G  D  G  N  S  S  *  I  C  S  Y  E  Q  K   : D  A  R  C  V  E  I  S  E  V  V  C  S  G  C  F  F  G  L  Q  C  L  L  K  F  V  K  L  A  S  P  N  T  S  L  V  S  Y  F  L  Y  T  N  W  L  :  A  H  V  R  A  S  H  G  H  T  T  S  S  N  K  R  E  G  K  A  T  L  V  G  L  M  V  S  S  S  N  L  N  *  I  E  F  N  G  E  E  Y  L  L  I  R  L  Q  K  I  N  D  K  N  V  R  R  R  R  R  F  P  G  I  R  N  T  T  Y  *  *  P  E  N  *  D  C  Q  M  V  P  S  *  C  P  S  R  R  N  S  V  R  R  Q  R :   C  *  S  Y  F  K  G  R  K  Y  I  *  E  S  G  R  G  V  I  S  F  V  Q  Q  I  S  L  D  L  S  R  I  P  K  Q  K  W  R   : Y  L  T  V  F  R  S  R  R  L  K  Y  *  V  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0076N09.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55958" stop="55937"/>
                    <exon start="53184" stop="53051"/>
                    <exon start="52871" stop="52770"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>255</number_coding_nucleotides>
                  <number_encoded_amino_acids>85</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ICSYEQKDARCVEISEVVCSGCFFGLQCLLKFVKLASPNTSLVSYFLYTNWLAHVRASHGHTTSSNKREGKATLVGLMVSSSNLN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0076N09.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="5" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52720" stop="52588"/>
                    <exon start="52427" stop="52312"/>
                    <exon start="52216" stop="52211"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MIKMLEEDEDFLESETQLTDDQKIEIAKWFLLNAPAGEIQYVAKDVRAILKDENIYKKAAEESFPSYNKSHLICLEFPNRSGDI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="47349" e_stop="47084"/>
            <exon e_start="46991" e_stop="46801"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.920" acc_prob="0.809" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="47349" e_stop="47084" e_length="266"/>
          </exon>
          <intron i_serial="1" don_prob="0.920" acc_prob="0.809">
            <gDNA_intron_boundary i_start="47083" i_stop="46992" i_length="92"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="46991" e_stop="46801" e_length="191"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47349" stop="47084"/>
              <exon start="46991" stop="46801"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215182" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47281" stop="47084"/>
              <exon start="46991" stop="46801"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215273" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47197" stop="47084"/>
              <exon start="46991" stop="46801"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215470" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="6" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTCCCCAGATGATTCTGCAATTTCCTTGGTCAACATTATTCGCCACCATGAGACTGAGTATCTGGCTTCTCTTCAGGTTTTTACGTTGTTCCTGCATCACATTCAACCCCTCCTTCAATCATGTCACCTAACACTTCCCCCTTCCCTGCCCCTCTCTTCCACCACTTCTCTGTCAAGTCTCTGTTGCCGGTATTTTCGTTCCAAGTTACTGATCGACTTTTTACTGGCAGACATCTTACTTGAAATTGCCTGATACCACTTTCAAG : GACTTGCGGAGGAAGCTTCCCGTTACTCGTACATTGTTCCCATGGCACAACACTGCACAATTTAGCCTTACTCGAGATATTGAAAAAGAACTTCGAATTGGAAAATAGAAACATTGCATGTCTTTTTATACAAGTTGAATATGTACACAGTACACACCATTCTTGATATGACAAGCGAGTTTATACTTGAG</gDNA_template>
            <first_frame> V  P  R  *  F  C  N  F  L  G  Q  H  Y  S  P  P  *  D  *  V  S  G  F  S  S  G  F  Y  V  V  P  A  S  H  S  T  P  P  S  I  M  S  P  N  T  S  P  F  P  A  P  L  F  H  H  F  S  V  K  S  L  L  P  V  F  S  F  Q  V  T  D  R  L  F  T  G  R  H  L  T  *  N  C  L  I  P  L  S  R :   T  C  G  G  S  F  P  L  L  V  H  C  S  H  G  T  T  L  H  N  L  A  L  L  E  I  L  K  K  N  F  E  L  E  N  R  N  I  A  C  L  F  I  Q  V  E  Y  V  H  S  T  H  H  S  *  Y  D  K  R  V  Y  T  *  </first_frame>
            <second_frame>  S  P  D  D  S  A  I  S  L  V  N  I  I  R  H  H  E  T  E  Y  L  A  S  L  Q  V  F  T  L  F  L  H  H  I  Q  P  L  L  Q  S  C  H  L  T  L  P  P  S  L  P  L  S  S  T  T  S  L  S  S  L  C  C  R  Y  F  R  S  K  L  L  I  D  F  L  L  A  D  I  L  L  E  I  A  *  Y  H  F  Q   : G  L  A  E  E  A  S  R  Y  S  Y  I  V  P  M  A  Q  H  C  T  I  *  P  Y  S  R  Y  *  K  R  T  S  N  W  K  I  E  T  L  H  V  F  L  Y  K  L  N  M  Y  T  V  H  T  I  L  D  M  T  S  E  F  I  L  E </second_frame>
            <third_frame>   P  Q  M  I  L  Q  F  P  W  S  T  L  F  A  T  M  R  L  S  I  W  L  L  F  R  F  L  R  C  S  C  I  T  F  N  P  S  F  N  H  V  T  *  H  F  P  L  P  C  P  S  L  P  P  L  L  C  Q  V  S  V  A  G  I  F  V  P  S  Y  *  S  T  F  Y  W  Q  T  S  Y  L  K  L  P  D  T  T  F  K  :  D  L  R  R  K  L  P  V  T  R  T  L  F  P  W  H  N  T  A  Q  F  S  L  T  R  D  I  E  K  E  L  R  I  G  K  *  K  H  C  M  S  F  Y  T  S  *  I  C  T  Q  Y  T  P  F  L  I  *  Q  A  S  L  Y  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0076N09.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47348" stop="47097"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SPDDSAISLVNIIRHHETEYLASLQVFTLFLHHIQPLLQSCHLTLPPSLPLSSTTSLSSLCCRYFRSKLLIDFLLADILLEIA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="7">
          <exon_coordinates>
            <exon e_start="55053" e_stop="54357"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="55053" e_stop="54357" e_length="697"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55053" stop="54357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542198" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="7" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCACGAAATATATTCTGTAATACCCAAACACATTTACTACCCATGGGGATCCCCGAGTAGTTTACCAGACAAATTGAGTTGTGGGCAACATCGAAGATTCTCTTCACCATCTAGGCTATGGAAGAGATTACTATAGAGATAGATGAAAGATTGTTTAGTCAATGGGTGTGAATTATCACTACACTTGCAACTACTATGTCGTAGTCGATATGAACTTAGTATATGTGTATTTTAAATTGCTCAAATTAGTGTATAGAGAGTTGAGGGTGGTACGGCTGCCACACCACATCTTACCTGGGGTTGGTGATAGTTTCACAGATTACTTTGACTGTAGTTTGATATATAATATCTGATGCTTTTGTTTTGTGAGTATCAGAATGAACTGTCTTTGTTTCGATTTTACTTCCTTATGATTAATCCTCTTCTTTCGTCTTTAAATATTGACATATTAGGCATGCTTTGACTGTCCTATCATTACGTACTTCTTGTGCTAGAAGATGTAACATTCTTCACCTTTTTGGTTTGCCTCCTGTAACGTGAAAATTTTTTGGTAGATAATTGAACATAACAGGCTGTGTTATCCTTATAGATGTTAACAAACAGCATATCTTGAGCCCATATGCAATATTGCGAGGTGCTGATAAAGTTTCATTATTACGTACGTGTGATCATATGAATAAATCTGAACGTGTAGTT</gDNA_template>
            <first_frame> L  T  K  Y  I  L  *  Y  P  N  T  F  T  T  H  G  D  P  R  V  V  Y  Q  T  N  *  V  V  G  N  I  E  D  S  L  H  H  L  G  Y  G  R  D  Y  Y  R  D  R  *  K  I  V  *  S  M  G  V  N  Y  H  Y  T  C  N  Y  Y  V  V  V  D  M  N  L  V  Y  V  Y  F  K  L  L  K  L  V  Y  R  E  L  R  V  V  R  L  P  H  H  I  L  P  G  V  G  D  S  F  T  D  Y  F  D  C  S  L  I  Y  N  I  *  C  F  C  F  V  S  I  R  M  N  C  L  C  F  D  F  T  S  L  *  L  I  L  F  F  R  L  *  I  L  T  Y  *  A  C  F  D  C  P  I  I  T  Y  F  L  C  *  K  M  *  H  S  S  P  F  W  F  A  S  C  N  V  K  I  F  W  *  I  I  E  H  N  R  L  C  Y  P  Y  R  C  *  Q  T  A  Y  L  E  P  I  C  N  I  A  R  C  *  *  S  F  I  I  T  Y  V  *  S  Y  E  *  I  *  T  C  S  </first_frame>
            <second_frame>  S  R  N  I  F  C  N  T  Q  T  H  L  L  P  M  G  I  P  E  *  F  T  R  Q  I  E  L  W  A  T  S  K  I  L  F  T  I  *  A  M  E  E  I  T  I  E  I  D  E  R  L  F  S  Q  W  V  *  I  I  T  T  L  A  T  T  M  S  *  S  I  *  T  *  Y  M  C  I  L  N  C  S  N  *  C  I  E  S  *  G  W  Y  G  C  H  T  T  S  Y  L  G  L  V  I  V  S  Q  I  T  L  T  V  V  *  Y  I  I  S  D  A  F  V  L  *  V  S  E  *  T  V  F  V  S  I  L  L  P  Y  D  *  S  S  S  F  V  F  K  Y  *  H  I  R  H  A  L  T  V  L  S  L  R  T  S  C  A  R  R  C  N  I  L  H  L  F  G  L  P  P  V  T  *  K  F  F  G  R  *  L  N  I  T  G  C  V  I  L  I  D  V  N  K  Q  H  I  L  S  P  Y  A  I  L  R  G  A  D  K  V  S  L  L  R  T  C  D  H  M  N  K  S  E  R  V  V </second_frame>
            <third_frame>   H  E  I  Y  S  V  I  P  K  H  I  Y  Y  P  W  G  S  P  S  S  L  P  D  K  L  S  C  G  Q  H  R  R  F  S  S  P  S  R  L  W  K  R  L  L  *  R  *  M  K  D  C  L  V  N  G  C  E  L  S  L  H  L  Q  L  L  C  R  S  R  Y  E  L  S  I  C  V  F  *  I  A  Q  I  S  V  *  R  V  E  G  G  T  A  A  T  P  H  L  T  W  G  W  *  *  F  H  R  L  L  *  L  *  F  D  I  *  Y  L  M  L  L  F  C  E  Y  Q  N  E  L  S  L  F  R  F  Y  F  L  M  I  N  P  L  L  S  S  L  N  I  D  I  L  G  M  L  *  L  S  Y  H  Y  V  L  L  V  L  E  D  V  T  F  F  T  F  L  V  C  L  L  *  R  E  N  F  L  V  D  N  *  T  *  Q  A  V  L  S  L  *  M  L  T  N  S  I  S  *  A  H  M  Q  Y  C  E  V  L  I  K  F  H  Y  Y  V  R  V  I  I  *  I  N  L  N  V  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0076N09.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="7" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54894" stop="54700"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SMGVNYHYTCNYYVVVDMNLVYVYFKLLKLVYRELRVVRLPHHILPGVGDSFTDYFDCSLIYNI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="65233" PGL_stop="65984"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65233" e_stop="65984"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="65233" e_stop="65984" e_length="752"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65233" stop="65984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578318" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGCCATCAACGGCTATTACTTTTCTCATTTCTTGAAAATCAATTATCCAAGCAGCATATGATAAAAAAAGTACTGGATTCTCCCATTTTCATCGAGAGACAATGTCGTCTTGCTTCCTGGATTCGCAACTTCAAGCATATACCGGTACGCATTAAGCACTGTGCACCTGTGCTTATGTGTTCCCCTAACATTAGACTTAGCAGGATCCATGCCCTTATAAATATTCAAATAGATTACCTTATAATAACATATAGTATTAAATAAATAGTATTAAATAATATTAGTATTTACTGTGTACTAATCCAAGTCCTATTAGGATTAGTACTCCTTAATCCTAGTCCTATTAGGATTAGTACTCCTTCCTATATCTCCTATATATATCTCCCATGTATTCCCTTATTAGGTTAACACTTCAATACAATCAATATTCCTTCATGGTATCAAGAGCCAGAAAACCTAGATCTTTTTTTCTCTAGTTTTTTTTCTCTCTTTAGGGCACCGATCGTTCCCTCTCTTCTCTTGGGCGGCGGCAGCCATGACAACCGAGGTGGATCCTCTCGATCCACTTCCTTCTGGCGTTAAACTCCTTCTCAGGCATCTTCATGCCCTGATTCCCAAAAAATTATCAGACATAAATTACCCTACATGGAAAATTACCGTTCTTACAGCCCTTGAGGCCAATTACCTTCTCAAATACGTTGATGGAAGCACAGAACCGGCGCCGGCAGTCATCACCGCCACAGACAAATCAG</gDNA_template>
            <first_frame> C  H  Q  R  L  L  L  F  S  F  L  E  N  Q  L  S  K  Q  H  M  I  K  K  V  L  D  S  P  I  F  I  E  R  Q  C  R  L  A  S  W  I  R  N  F  K  H  I  P  V  R  I  K  H  C  A  P  V  L  M  C  S  P  N  I  R  L  S  R  I  H  A  L  I  N  I  Q  I  D  Y  L  I  I  T  Y  S  I  K  *  I  V  L  N  N  I  S  I  Y  C  V  L  I  Q  V  L  L  G  L  V  L  L  N  P  S  P  I  R  I  S  T  P  S  Y  I  S  Y  I  Y  L  P  C  I  P  L  L  G  *  H  F  N  T  I  N  I  P  S  W  Y  Q  E  P  E  N  L  D  L  F  F  S  S  F  F  S  L  F  R  A  P  I  V  P  S  L  L  L  G  G  G  S  H  D  N  R  G  G  S  S  R  S  T  S  F  W  R  *  T  P  S  Q  A  S  S  C  P  D  S  Q  K  I  I  R  H  K  L  P  Y  M  E  N  Y  R  S  Y  S  P  *  G  Q  L  P  S  Q  I  R  *  W  K  H  R  T  G  A  G  S  H  H  R  H  R  Q  I   </first_frame>
            <second_frame>  A  I  N  G  Y  Y  F  S  H  F  L  K  I  N  Y  P  S  S  I  *  *  K  K  Y  W  I  L  P  F  S  S  R  D  N  V  V  L  L  P  G  F  A  T  S  S  I  Y  R  Y  A  L  S  T  V  H  L  C  L  C  V  P  L  T  L  D  L  A  G  S  M  P  L  *  I  F  K  *  I  T  L  *  *  H  I  V  L  N  K  *  Y  *  I  I  L  V  F  T  V  Y  *  S  K  S  Y  *  D  *  Y  S  L  I  L  V  L  L  G  L  V  L  L  P  I  S  P  I  Y  I  S  H  V  F  P  Y  *  V  N  T  S  I  Q  S  I  F  L  H  G  I  K  S  Q  K  T  *  I  F  F  S  L  V  F  F  L  S  L  G  H  R  S  F  P  L  F  S  W  A  A  A  A  M  T  T  E  V  D  P  L  D  P  L  P  S  G  V  K  L  L  L  R  H  L  H  A  L  I  P  K  K  L  S  D  I  N  Y  P  T  W  K  I  T  V  L  T  A  L  E  A  N  Y  L  L  K  Y  V  D  G  S  T  E  P  A  P  A  V  I  T  A  T  D  K  S  </second_frame>
            <third_frame>   P  S  T  A  I  T  F  L  I  S  *  K  S  I  I  Q  A  A  Y  D  K  K  S  T  G  F  S  H  F  H  R  E  T  M  S  S  C  F  L  D  S  Q  L  Q  A  Y  T  G  T  H  *  A  L  C  T  C  A  Y  V  F  P  *  H  *  T  *  Q  D  P  C  P  Y  K  Y  S  N  R  L  P  Y  N  N  I  *  Y  *  I  N  S  I  K  *  Y  *  Y  L  L  C  T  N  P  S  P  I  R  I  S  T  P  *  S  *  S  Y  *  D  *  Y  S  F  L  Y  L  L  Y  I  S  P  M  Y  S  L  I  R  L  T  L  Q  Y  N  Q  Y  S  F  M  V  S  R  A  R  K  P  R  S  F  F  L  *  F  F  F  S  L  *  G  T  D  R  S  L  S  S  L  G  R  R  Q  P  *  Q  P  R  W  I  L  S  I  H  F  L  L  A  L  N  S  F  S  G  I  F  M  P  *  F  P  K  N  Y  Q  T  *  I  T  L  H  G  K  L  P  F  L  Q  P  L  R  P  I  T  F  S  N  T  L  M  E  A  Q  N  R  R  R  Q  S  S  P  P  Q  T  N  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0076N09.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65693" stop="65983"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>291</number_coding_nucleotides>
                  <number_encoded_amino_acids>97</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFFSLVFFLSLGHRSFPLFSWAAAAMTTEVDPLDPLPSGVKLLLRHLHALIPKKLSDINYPTWKITVLTALEANYLLKYVDGSTEPAPAVITATDKS</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0076N09.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65233" stop="65496"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CHQRLLLFSFLENQLSKQHMIKKVLDSPIFIERQCRLASWIRNFKHIPVRIKHCAPVLMCSPNIRLSRIHALINIQIDYLIITYSIK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="68231" PGL_stop="68671"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68231" e_stop="68671"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.959"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.959">
            <gDNA_exon_boundary e_start="68231" e_stop="68671" e_length="441"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68231" stop="68671"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367110" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCACCCACAATACACCCGCAACCACCACCCACACTCACAACCAACCCGAACCACCCCATACCCACAACATCTCCAGCCCGATCCGTTTTGGGTCCTTCCCGGCCACCCCCGAATCATCACCGCCCGTGCCACCCCCCAATACTCATCCCATGTTACCTCATGGAAAAGCCGGTATCTTTAAACCCAAAACCTTTCAGGCTACCATACTACCAAATACACCCCTTCCCGATAGTGAACCAACAACCTACTCTGTTGCCTCAAAAAATGCTTATTGGCGTCATGCTATGGATGACGAGTTTAAGGCTTTGACTGATCAGAAAACTTGGGTTCTTGTACCTAAGCCCTATGGGCGGCACCCAGTGGGTTGTAAATGGGTGTACAAAATTAAACACAATGCAAATGACAGTATTTCCAAGTACAAGGCTCGTTTGGTTGCTAAAG</gDNA_template>
            <first_frame> S  P  T  I  H  P  Q  P  P  P  T  L  T  T  N  P  N  H  P  I  P  T  T  S  P  A  R  S  V  L  G  P  S  R  P  P  P  N  H  H  R  P  C  H  P  P  I  L  I  P  C  Y  L  M  E  K  P  V  S  L  N  P  K  P  F  R  L  P  Y  Y  Q  I  H  P  F  P  I  V  N  Q  Q  P  T  L  L  P  Q  K  M  L  I  G  V  M  L  W  M  T  S  L  R  L  *  L  I  R  K  L  G  F  L  Y  L  S  P  M  G  G  T  Q  W  V  V  N  G  C  T  K  L  N  T  M  Q  M  T  V  F  P  S  T  R  L  V  W  L  L  K </first_frame>
            <second_frame>  H  P  Q  Y  T  R  N  H  H  P  H  S  Q  P  T  R  T  T  P  Y  P  Q  H  L  Q  P  D  P  F  W  V  L  P  G  H  P  R  I  I  T  A  R  A  T  P  Q  Y  S  S  H  V  T  S  W  K  S  R  Y  L  *  T  Q  N  L  S  G  Y  H  T  T  K  Y  T  P  S  R  *  *  T  N  N  L  L  C  C  L  K  K  C  L  L  A  S  C  Y  G  *  R  V  *  G  F  D  *  S  E  N  L  G  S  C  T  *  A  L  W  A  A  P  S  G  L  *  M  G  V  Q  N  *  T  Q  C  K  *  Q  Y  F  Q  V  Q  G  S  F  G  C  *   </second_frame>
            <third_frame>   T  H  N  T  P  A  T  T  T  H  T  H  N  Q  P  E  P  P  H  T  H  N  I  S  S  P  I  R  F  G  S  F  P  A  T  P  E  S  S  P  P  V  P  P  P  N  T  H  P  M  L  P  H  G  K  A  G  I  F  K  P  K  T  F  Q  A  T  I  L  P  N  T  P  L  P  D  S  E  P  T  T  Y  S  V  A  S  K  N  A  Y  W  R  H  A  M  D  D  E  F  K  A  L  T  D  Q  K  T  W  V  L  V  P  K  P  Y  G  R  H  P  V  G  C  K  W  V  Y  K  I  K  H  N  A  N  D  S  I  S  K  Y  K  A  R  L  V  A  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0076N09.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68233" stop="68670"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>438</number_coding_nucleotides>
                  <number_encoded_amino_acids>146</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>THNTPATTTHTHNQPEPPHTHNISSPIRFGSFPATPESSPPVPPPNTHPMLPHGKAGIFKPKTFQATILPNTPLPDSEPTTYSVASKNAYWRHAMDDEFKALTDQKTWVLVPKPYGRHPVGCKWVYKIKHNANDSISKYKARLVAK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="86910" PGL_stop="86336"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="86910" e_stop="86336"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="86910" e_stop="86336" e_length="575"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86910" stop="86336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331792" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTGAACGTGAATCACAGTGCAACCCTAATTGAATAATCATGCGTCCATCTTATGACTTCTCTTTCAGTCGGGCTAGATCCGGCATGCTTACCGTCTATGCTCGTCGTCGTCCATGGAGAGAGCTATTGACCCATCCGTCTTCCTATACCCTACCTATTTCCGTCAGCGATTTCGCATCTCGGGTGAAGCGAAATCTGAGCTACTTTCGGGTCAACTATGCGATGATTGTACTGGTTGTACTCTTCTTAAGCATTTTATGGCATCCAATTTCAATGATTGTGTTCTTAATCGTGTCGGTAGGTTGGTATTTCCTCTACTTCCATCGCGACGAACCGTTGATGGTTTTTAATCGTACGATTGATGATAGAATTGTTCTGGTTGTTCTCGGAGTTGTTACAGTGGTGAGCTTGGTGCTCACTCATGTTTGGTTGAATGTGTTGGTGTCGATTGTCGTAGGGATTGTGTTGATATTTTTGCATGCAACTTTTAGAATTACAGAGAATTTGTTTCTGGAAGAAGAAGATGCCGCTGATGGTGGATTGCACTCTTTTGTTGGTACCTATGTGTGATTTTG</gDNA_template>
            <first_frame> F  E  R  E  S  Q  C  N  P  N  *  I  I  M  R  P  S  Y  D  F  S  F  S  R  A  R  S  G  M  L  T  V  Y  A  R  R  R  P  W  R  E  L  L  T  H  P  S  S  Y  T  L  P  I  S  V  S  D  F  A  S  R  V  K  R  N  L  S  Y  F  R  V  N  Y  A  M  I  V  L  V  V  L  F  L  S  I  L  W  H  P  I  S  M  I  V  F  L  I  V  S  V  G  W  Y  F  L  Y  F  H  R  D  E  P  L  M  V  F  N  R  T  I  D  D  R  I  V  L  V  V  L  G  V  V  T  V  V  S  L  V  L  T  H  V  W  L  N  V  L  V  S  I  V  V  G  I  V  L  I  F  L  H  A  T  F  R  I  T  E  N  L  F  L  E  E  E  D  A  A  D  G  G  L  H  S  F  V  G  T  Y  V  *  F   </first_frame>
            <second_frame>  L  N  V  N  H  S  A  T  L  I  E  *  S  C  V  H  L  M  T  S  L  S  V  G  L  D  P  A  C  L  P  S  M  L  V  V  V  H  G  E  S  Y  *  P  I  R  L  P  I  P  Y  L  F  P  S  A  I  S  H  L  G  *  S  E  I  *  A  T  F  G  S  T  M  R  *  L  Y  W  L  Y  S  S  *  A  F  Y  G  I  Q  F  Q  *  L  C  S  *  S  C  R  *  V  G  I  S  S  T  S  I  A  T  N  R  *  W  F  L  I  V  R  L  M  I  E  L  F  W  L  F  S  E  L  L  Q  W  *  A  W  C  S  L  M  F  G  *  M  C  W  C  R  L  S  *  G  L  C  *  Y  F  C  M  Q  L  L  E  L  Q  R  I  C  F  W  K  K  K  M  P  L  M  V  D  C  T  L  L  L  V  P  M  C  D  F  </second_frame>
            <third_frame>   *  T  *  I  T  V  Q  P  *  L  N  N  H  A  S  I  L  *  L  L  F  Q  S  G  *  I  R  H  A  Y  R  L  C  S  S  S  S  M  E  R  A  I  D  P  S  V  F  L  Y  P  T  Y  F  R  Q  R  F  R  I  S  G  E  A  K  S  E  L  L  S  G  Q  L  C  D  D  C  T  G  C  T  L  L  K  H  F  M  A  S  N  F  N  D  C  V  L  N  R  V  G  R  L  V  F  P  L  L  P  S  R  R  T  V  D  G  F  *  S  Y  D  *  *  *  N  C  S  G  C  S  R  S  C  Y  S  G  E  L  G  A  H  S  C  L  V  E  C  V  G  V  D  C  R  R  D  C  V  D  I  F  A  C  N  F  *  N  Y  R  E  F  V  S  G  R  R  R  C  R  *  W  W  I  A  L  F  C  W  Y  L  C  V  I  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0076N09.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86877" stop="86341"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>534</number_coding_nucleotides>
                  <number_encoded_amino_acids>178</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IIMRPSYDFSFSRARSGMLTVYARRRPWRELLTHPSSYTLPISVSDFASRVKRNLSYFRVNYAMIVLVVLFLSILWHPISMIVFLIVSVGWYFLYFHRDEPLMVFNRTIDDRIVLVVLGVVTVVSLVLTHVWLNVLVSIVVGIVLIFLHATFRITENLFLEEEDAADGGLHSFVGTYV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="98595" PGL_stop="99808"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="98595" e_stop="99808"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="98595" e_stop="99808" e_length="1214"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98595" stop="99191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554206" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98854" stop="99596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316512" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98986" stop="99808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726450" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTCTAGTGGAGTAGTAGTAGTAAATAACAACCTCTTCTCTCTCTTTCTTTCTTTGTCAGAGAGTTGAAGAAAATTGTTGATTAATATTTAATACTACTACCACTGATTCTCTGTTTCTCTTTCTAATGGAGTAGTAGTAGCAATAAAATGCAAAAGTGTATTGAAAAAAAATAAAGATAACAGCTTTTTTTTTTTTTTGAACATGTCAAAAATTATCTTTGGCTGAACAAAGTCTTCTCTTTCACACCTCCCAAACCCCTCTTCTCTCTGTCTATCAAGTATCAACTACAGCCCTATAGAGATTGAAGAATCTAGGGTTTTGTGTCTTGTTTGTTTTCTTTCTTTGCTCAATGTTATAGCTCTGCTTCCTGTCTTGTTTGTTGTTTGATTGATTAAATCACCTTCAGGTCATGTTTTGTTTTTTCTGGTTGATTTTACCTTTCTTCAGTTGAATTTCTCGATACCCCTTTTGTTTCTTTGTGTTGTATCAATTGGTTGTTGGTATCTAGGCTCTACCATTTTTATCTGTTTGTTGTATCTTTTTGTTTTTAAAATATGGAGGAGATTGAGGAAGCTAACAGAGTTGCAGTTGAGAGTTGTCATAGAGTTATTAGTAAGTTATCTCAACCTCATGATGAGAAAATTTTAGCAAGAGAGACTGGAGAGGCTGTTCACAAGTTTAAGAAAGTGGTGACTCTCTTAAATTCTAATTTGGGTCATGCAAGAGTAAGAAAAACCAAGAAAATTCTGACCCCTTTTCCCCATAGCCTCTTGTTAGAGAATTCAAGTTGTAAAATTGTTGATGATCAGCTTAAACCCTTACAACTGCTTCCTATCACCTATCCTGAAAATATCAGACTAGAAATTGGTTCTAATGTGAATAGGATTCACCCTTCATTGGAGTTAAATTCACATAGTAAAAATCCTCTTCAGTTAGCCCAACAAACAAGCTATCACTTTGCCCAACAGCAGCAGCAACAGAGGCGGTATCAGCTTCAGCAGCAGGCGGATATGATGTATCGGCGTAGTAATAGTGGGATTAGTTTAAACTTTGATAGCTCTACATGTACTCCAACTATGTCATCAACGAGGTCGTTTATCTCCTCGTTGAGTATTGATGGAAGTGTAGCTAACTTGGATGGTAATGCCTTCCATTTTATCGGGGCTTCGCGCTCCGCGGATCAGAGCTCAGTTCAACATAAGAAAAGGTGCTC</gDNA_template>
            <first_frame> V  *  W  S  S  S  S  K  *  Q  P  L  L  S  L  S  F  F  V  R  E  L  K  K  I  V  D  *  Y  L  I  L  L  P  L  I  L  C  F  S  F  *  W  S  S  S  S  N  K  M  Q  K  C  I  E  K  K  *  R  *  Q  L  F  F  F  F  E  H  V  K  N  Y  L  W  L  N  K  V  F  S  F  T  P  P  K  P  L  F  S  L  S  I  K  Y  Q  L  Q  P  Y  R  D  *  R  I  *  G  F  V  S  C  L  F  S  F  F  A  Q  C  Y  S  S  A  S  C  L  V  C  C  L  I  D  *  I  T  F  R  S  C  F  V  F  S  G  *  F  Y  L  S  S  V  E  F  L  D  T  P  F  V  S  L  C  C  I  N  W  L  L  V  S  R  L  Y  H  F  Y  L  F  V  V  S  F  C  F  *  N  M  E  E  I  E  E  A  N  R  V  A  V  E  S  C  H  R  V  I  S  K  L  S  Q  P  H  D  E  K  I  L  A  R  E  T  G  E  A  V  H  K  F  K  K  V  V  T  L  L  N  S  N  L  G  H  A  R  V  R  K  T  K  K  I  L  T  P  F  P  H  S  L  L  L  E  N  S  S  C  K  I  V  D  D  Q  L  K  P  L  Q  L  L  P  I  T  Y  P  E  N  I  R  L  E  I  G  S  N  V  N  R  I  H  P  S  L  E  L  N  S  H  S  K  N  P  L  Q  L  A  Q  Q  T  S  Y  H  F  A  Q  Q  Q  Q  Q  Q  R  R  Y  Q  L  Q  Q  Q  A  D  M  M  Y  R  R  S  N  S  G  I  S  L  N  F  D  S  S  T  C  T  P  T  M  S  S  T  R  S  F  I  S  S  L  S  I  D  G  S  V  A  N  L  D  G  N  A  F  H  F  I  G  A  S  R  S  A  D  Q  S  S  V  Q  H  K  K  R  C   </first_frame>
            <second_frame>  S  S  G  V  V  V  V  N  N  N  L  F  S  L  F  L  S  L  S  E  S  *  R  K  L  L  I  N  I  *  Y  Y  Y  H  *  F  S  V  S  L  S  N  G  V  V  V  A  I  K  C  K  S  V  L  K  K  N  K  D  N  S  F  F  F  F  L  N  M  S  K  I  I  F  G  *  T  K  S  S  L  S  H  L  P  N  P  S  S  L  C  L  S  S  I  N  Y  S  P  I  E  I  E  E  S  R  V  L  C  L  V  C  F  L  S  L  L  N  V  I  A  L  L  P  V  L  F  V  V  *  L  I  K  S  P  S  G  H  V  L  F  F  L  V  D  F  T  F  L  Q  L  N  F  S  I  P  L  L  F  L  C  V  V  S  I  G  C  W  Y  L  G  S  T  I  F  I  C  L  L  Y  L  F  V  F  K  I  W  R  R  L  R  K  L  T  E  L  Q  L  R  V  V  I  E  L  L  V  S  Y  L  N  L  M  M  R  K  F  *  Q  E  R  L  E  R  L  F  T  S  L  R  K  W  *  L  S  *  I  L  I  W  V  M  Q  E  *  E  K  P  R  K  F  *  P  L  F  P  I  A  S  C  *  R  I  Q  V  V  K  L  L  M  I  S  L  N  P  Y  N  C  F  L  S  P  I  L  K  I  S  D  *  K  L  V  L  M  *  I  G  F  T  L  H  W  S  *  I  H  I  V  K  I  L  F  S  *  P  N  K  Q  A  I  T  L  P  N  S  S  S  N  R  G  G  I  S  F  S  S  R  R  I  *  C  I  G  V  V  I  V  G  L  V  *  T  L  I  A  L  H  V  L  Q  L  C  H  Q  R  G  R  L  S  P  R  *  V  L  M  E  V  *  L  T  W  M  V  M  P  S  I  L  S  G  L  R  A  P  R  I  R  A  Q  F  N  I  R  K  G  A  </second_frame>
            <third_frame>   L  V  E  *  *  *  *  I  T  T  S  S  L  S  F  F  L  C  Q  R  V  E  E  N  C  *  L  I  F  N  T  T  T  T  D  S  L  F  L  F  L  M  E  *  *  *  Q  *  N  A  K  V  Y  *  K  K  I  K  I  T  A  F  F  F  F  *  T  C  Q  K  L  S  L  A  E  Q  S  L  L  F  H  T  S  Q  T  P  L  L  S  V  Y  Q  V  S  T  T  A  L  *  R  L  K  N  L  G  F  C  V  L  F  V  F  F  L  C  S  M  L  *  L  C  F  L  S  C  L  L  F  D  *  L  N  H  L  Q  V  M  F  C  F  F  W  L  I  L  P  F  F  S  *  I  S  R  Y  P  F  C  F  F  V  L  Y  Q  L  V  V  G  I  *  A  L  P  F  L  S  V  C  C  I  F  L  F  L  K  Y  G  G  D  *  G  S  *  Q  S  C  S  *  E  L  S  *  S  Y  *  *  V  I  S  T  S  *  *  E  N  F  S  K  R  D  W  R  G  C  S  Q  V  *  E  S  G  D  S  L  K  F  *  F  G  S  C  K  S  K  K  N  Q  E  N  S  D  P  F  S  P  *  P  L  V  R  E  F  K  L  *  N  C  *  *  S  A  *  T  L  T  T  A  S  Y  H  L  S  *  K  Y  Q  T  R  N  W  F  *  C  E  *  D  S  P  F  I  G  V  K  F  T  *  *  K  S  S  S  V  S  P  T  N  K  L  S  L  C  P  T  A  A  A  T  E  A  V  S  A  S  A  A  G  G  Y  D  V  S  A  *  *  *  W  D  *  F  K  L  *  *  L  Y  M  Y  S  N  Y  V  I  N  E  V  V  Y  L  L  V  E  Y  *  W  K  C  S  *  L  G  W  *  C  L  P  F  Y  R  G  F  A  L  R  G  S  E  L  S  S  T  *  E  K  V  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0076N09.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99147" stop="99806"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>660</number_coding_nucleotides>
                  <number_encoded_amino_acids>220</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NMEEIEEANRVAVESCHRVISKLSQPHDEKILARETGEAVHKFKKVVTLLNSNLGHARVRKTKKILTPFPHSLLLENSSCKIVDDQLKPLQLLPITYPENIRLEIGSNVNRIHPSLELNSHSKNPLQLAQQTSYHFAQQQQQQRRYQLQQQADMMYRRSNSGISLNFDSSTCTPTMSSTRSFISSLSIDGSVANLDGNAFHFIGASRSADQSSVQHKKRC</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="100062" PGL_stop="101002"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="100062" e_stop="100085"/>
            <exon e_start="100476" e_stop="100858"/>
            <exon e_start="100998" e_stop="101002"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.753" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.464" acc_prob="0.104" e_score="0.953"/>
          <exon-only e_score="0.800"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="100062" e_stop="100085" e_length="24"/>
          </exon>
          <intron i_serial="1" don_prob="0.753" acc_prob="0.998">
            <gDNA_intron_boundary i_start="100086" i_stop="100475" i_length="390"/>
          </intron>
          <exon e_serial="2" e_score="0.953">
            <gDNA_exon_boundary e_start="100476" e_stop="100858" e_length="383"/>
          </exon>
          <intron i_serial="2" don_prob="0.464" acc_prob="0.104">
            <gDNA_intron_boundary i_start="100859" i_stop="100997" i_length="139"/>
          </intron>
          <exon e_serial="3" e_score="0.800">
            <gDNA_exon_boundary e_start="100998" e_stop="101002" e_length="5"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100062" stop="100085"/>
              <exon start="100476" stop="100858"/>
              <exon start="100998" stop="101002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226134" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100062" stop="100085"/>
              <exon start="100476" stop="100780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100520" stop="100858"/>
              <exon start="100998" stop="101002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226038" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATCAAAGGTTCTCCGCACCCTAG : GGGATACTACAAGTGTAGCAGCATGAGAGGCTGTCCTGCCAGGAAGCACGTTGAGAGATGCTTGGAAGAGCCATCAATGCTTATTGTCACTTACGAAGGAGAACATAACCATCCTAGGTTGCCATCCCAATCGGCAAATGCATGAGATCTTTAGAGAAATGCGAACAAAGATCATCATCATCATAAGCCTCGAGAAATTTCGAATACTCTATTTTAAACCGGCTTCAATTGTTCCTGTACATATTTTGCTTTGAAGTGCAATGCACATGGGGCCAAATACTAGTTCAAAAATTGGAAGGGTATATGGAAAGGCAAATGTAAAGCCAGGTTAATGATGCAGTGAGACTTTAAAGGTTTCCTAATTGTAAGATTATCCTCATAAA : GAGTA</gDNA_template>
            <first_frame> D  Q  R  F  S  A  P  *  :  G  I  L  Q  V  *  Q  H  E  R  L  S  C  Q  E  A  R  *  E  M  L  G  R  A  I  N  A  Y  C  H  L  R  R  R  T  *  P  S  *  V  A  I  P  I  G  K  C  M  R  S  L  E  K  C  E  Q  R  S  S  S  S  *  A  S  R  N  F  E  Y  S  I  L  N  R  L  Q  L  F  L  Y  I  F  C  F  E  V  Q  C  T  W  G  Q  I  L  V  Q  K  L  E  G  Y  M  E  R  Q  M  *  S  Q  V  N  D  A  V  R  L  *  R  F  P  N  C  K  I  I  L  I  K :   S  </first_frame>
            <second_frame>  I  K  G  S  P  H  P  R :   G  Y  Y  K  C  S  S  M  R  G  C  P  A  R  K  H  V  E  R  C  L  E  E  P  S  M  L  I  V  T  Y  E  G  E  H  N  H  P  R  L  P  S  Q  S  A  N  A  *  D  L  *  R  N  A  N  K  D  H  H  H  H  K  P  R  E  I  S  N  T  L  F  *  T  G  F  N  C  S  C  T  Y  F  A  L  K  C  N  A  H  G  A  K  Y  *  F  K  N  W  K  G  I  W  K  G  K  C  K  A  R  L  M  M  Q  *  D  F  K  G  F  L  I  V  R  L  S  S  *   : R  V </second_frame>
            <third_frame>   S  K  V  L  R  T  L   : G  D  T  T  S  V  A  A  *  E  A  V  L  P  G  S  T  L  R  D  A  W  K  S  H  Q  C  L  L  S  L  T  K  E  N  I  T  I  L  G  C  H  P  N  R  Q  M  H  E  I  F  R  E  M  R  T  K  I  I  I  I  I  S  L  E  K  F  R  I  L  Y  F  K  P  A  S  I  V  P  V  H  I  L  L  *  S  A  M  H  M  G  P  N  T  S  S  K  I  G  R  V  Y  G  K  A  N  V  K  P  G  *  *  C  S  E  T  L  K  V  S  *  L  *  D  Y  P  H  K  :  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0076N09.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="100502" stop="100729"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EAVLPGSTLRDAWKSHQCLLSLTKENITILGCHPNRQMHEIFREMRTKIIIIISLEKFRILYFKPASIVPVHILL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="103215" PGL_stop="102681"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="103215" e_stop="102681"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.940"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.940">
            <gDNA_exon_boundary e_start="103215" e_stop="102681" e_length="535"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103215" stop="102681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538071" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103214" stop="102809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268499" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTATAATTACAGACTTAAAGGAGTATAAAATCACAAAGACTTTTGTCTCCACTAGAAACACAGATTTATATAATTTCCTTAAGATTGTTGACAATCTGTGTAAAGAAAATAAAAAATTACTGGTTGTAATAAATCATTCAGATACACGAAGTAACTGAGATTTTTAGAACCAGTAAATAAGATGAACAGAATTTTATTTGTAAAATAATTTCATCTGTAAAACTTACCAGAATCTGGAATACTCTTTTTGATAATTTAGAAAGAAAATCAAGTCCACTGAATTCACAGTGTCCCTTTAAGGAAATTATTCCCCTCTAGTATCCGAGGTTTGATTTGGAATATAACCTCCCAAGGTAAAATGATCTTAATCAGTAGAGTATAGATACCAAAAACTCTACTGTCAGCGAATCAATCCACAGCAGGAAAGTACACGAAGAAATATTTATTTTTTAAGAAGAAGGAAGATCAGAAAATTTCGTTAGTAAATATTCTGAAGACTGAATGGTATTTATAGGCAAGAATAATATATTCTGA</gDNA_template>
            <first_frame> I  I  I  T  D  L  K  E  Y  K  I  T  K  T  F  V  S  T  R  N  T  D  L  Y  N  F  L  K  I  V  D  N  L  C  K  E  N  K  K  L  L  V  V  I  N  H  S  D  T  R  S  N  *  D  F  *  N  Q  *  I  R  *  T  E  F  Y  L  *  N  N  F  I  C  K  T  Y  Q  N  L  E  Y  S  F  *  *  F  R  K  K  I  K  S  T  E  F  T  V  S  L  *  G  N  Y  S  P  L  V  S  E  V  *  F  G  I  *  P  P  K  V  K  *  S  *  S  V  E  Y  R  Y  Q  K  L  Y  C  Q  R  I  N  P  Q  Q  E  S  T  R  R  N  I  Y  F  L  R  R  R  K  I  R  K  F  R  *  *  I  F  *  R  L  N  G  I  Y  R  Q  E  *  Y  I  L  </first_frame>
            <second_frame>  L  *  L  Q  T  *  R  S  I  K  S  Q  R  L  L  S  P  L  E  T  Q  I  Y  I  I  S  L  R  L  L  T  I  C  V  K  K  I  K  N  Y  W  L  *  *  I  I  Q  I  H  E  V  T  E  I  F  R  T  S  K  *  D  E  Q  N  F  I  C  K  I  I  S  S  V  K  L  T  R  I  W  N  T  L  F  D  N  L  E  R  K  S  S  P  L  N  S  Q  C  P  F  K  E  I  I  P  L  *  Y  P  R  F  D  L  E  Y  N  L  P  R  *  N  D  L  N  Q  *  S  I  D  T  K  N  S  T  V  S  E  S  I  H  S  R  K  V  H  E  E  I  F  I  F  *  E  E  G  R  S  E  N  F  V  S  K  Y  S  E  D  *  M  V  F  I  G  K  N  N  I  F  * </second_frame>
            <third_frame>   Y  N  Y  R  L  K  G  V  *  N  H  K  D  F  C  L  H  *  K  H  R  F  I  *  F  P  *  D  C  *  Q  S  V  *  R  K  *  K  I  T  G  C  N  K  S  F  R  Y  T  K  *  L  R  F  L  E  P  V  N  K  M  N  R  I  L  F  V  K  *  F  H  L  *  N  L  P  E  S  G  I  L  F  L  I  I  *  K  E  N  Q  V  H  *  I  H  S  V  P  L  R  K  L  F  P  S  S  I  R  G  L  I  W  N  I  T  S  Q  G  K  M  I  L  I  S  R  V  *  I  P  K  T  L  L  S  A  N  Q  S  T  A  G  K  Y  T  K  K  Y  L  F  F  K  K  K  E  D  Q  K  I  S  L  V  N  I  L  K  T  E  W  Y  L  *  A  R  I  I  Y  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLe0076N09.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="103661" PGL_stop="104055"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="103661" e_stop="104055"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.959"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.959">
            <gDNA_exon_boundary e_start="103661" e_stop="104055" e_length="395"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103661" stop="104055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242172" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103665" stop="104027"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242208" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATAGTAAAACTGTTGGATCACAAGTGCAGGAACTTCAACTTATTCTCCATGATCTGATTGCTGAAGATATGGTAGTAAATGAAGTTTTTCAAATGGCTGTAATGATCGAGAAATTGCCTCCTTCGTGGAATGATTTCAAGAATTATCTAAAGCACAAGCGTAAAGAAATGAAGCTTGAAGATCTTGTGATTCGTCTCAAGATTGAGGAAGATAACAAAAATGTTGAAAAGAAGTCGCGTAAGAGTTCAACAATCATTGGAGTTAATATTGTTGAAGAAGCTCCTACCAAAGACAAAAAGAGAAAGAAGTCCAATGGGCAGAAGTCAGAACATGCCAAGAAGAAATTCAAAGGCAACTGTTATAATTGTGGCAAGGCTGGTCATAGATCTTCTGA</gDNA_template>
            <first_frame> D  S  K  T  V  G  S  Q  V  Q  E  L  Q  L  I  L  H  D  L  I  A  E  D  M  V  V  N  E  V  F  Q  M  A  V  M  I  E  K  L  P  P  S  W  N  D  F  K  N  Y  L  K  H  K  R  K  E  M  K  L  E  D  L  V  I  R  L  K  I  E  E  D  N  K  N  V  E  K  K  S  R  K  S  S  T  I  I  G  V  N  I  V  E  E  A  P  T  K  D  K  K  R  K  K  S  N  G  Q  K  S  E  H  A  K  K  K  F  K  G  N  C  Y  N  C  G  K  A  G  H  R  S  S   </first_frame>
            <second_frame>  I  V  K  L  L  D  H  K  C  R  N  F  N  L  F  S  M  I  *  L  L  K  I  W  *  *  M  K  F  F  K  W  L  *  *  S  R  N  C  L  L  R  G  M  I  S  R  I  I  *  S  T  S  V  K  K  *  S  L  K  I  L  *  F  V  S  R  L  R  K  I  T  K  M  L  K  R  S  R  V  R  V  Q  Q  S  L  E  L  I  L  L  K  K  L  L  P  K  T  K  R  E  R  S  P  M  G  R  S  Q  N  M  P  R  R  N  S  K  A  T  V  I  I  V  A  R  L  V  I  D  L  L  </second_frame>
            <third_frame>   *  *  N  C  W  I  T  S  A  G  T  S  T  Y  S  P  *  S  D  C  *  R  Y  G  S  K  *  S  F  S  N  G  C  N  D  R  E  I  A  S  F  V  E  *  F  Q  E  L  S  K  A  Q  A  *  R  N  E  A  *  R  S  C  D  S  S  Q  D  *  G  R  *  Q  K  C  *  K  E  V  A  *  E  F  N  N  H  W  S  *  Y  C  *  R  S  S  Y  Q  R  Q  K  E  K  E  V  Q  W  A  E  V  R  T  C  Q  E  E  I  Q  R  Q  L  L  *  L  W  Q  G  W  S  *  I  F  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0076N09.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103661" stop="104053"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>393</number_coding_nucleotides>
                  <number_encoded_amino_acids>131</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DSKTVGSQVQELQLILHDLIAEDMVVNEVFQMAVMIEKLPPSWNDFKNYLKHKRKEMKLEDLVIRLKIEEDNKNVEKKSRKSSTIIGVNIVEEAPTKDKKRKKSNGQKSEHAKKKFKGNCYNCGKAGHRSS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="107510" PGL_stop="108472"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="107510" e_stop="107523"/>
            <exon e_start="107575" e_stop="107615"/>
            <exon e_start="107763" e_stop="108046"/>
            <exon e_start="108214" e_stop="108472"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.570" acc_prob="0.963" e_score="0.571"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.610"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.930"/>
          <exon-only e_score="0.934"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.571">
            <gDNA_exon_boundary e_start="107510" e_stop="107523" e_length="14"/>
          </exon>
          <intron i_serial="1" don_prob="0.570" acc_prob="0.963">
            <gDNA_intron_boundary i_start="107524" i_stop="107574" i_length="51"/>
          </intron>
          <exon e_serial="2" e_score="0.610">
            <gDNA_exon_boundary e_start="107575" e_stop="107615" e_length="41"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="107616" i_stop="107762" i_length="147"/>
          </intron>
          <exon e_serial="3" e_score="0.930">
            <gDNA_exon_boundary e_start="107763" e_stop="108046" e_length="284"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="108047" i_stop="108213" i_length="167"/>
          </intron>
          <exon e_serial="4" e_score="0.934">
            <gDNA_exon_boundary e_start="108214" e_stop="108472" e_length="259"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107510" stop="107523"/>
              <exon start="107575" stop="107615"/>
              <exon start="107763" stop="108046"/>
              <exon start="108214" stop="108472"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551179" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107510" stop="107523"/>
              <exon start="107575" stop="107615"/>
              <exon start="107763" stop="108046"/>
              <exon start="108214" stop="108472"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689001" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAACGAATACAACC : GTATACACCAAAGTTCGACGGTTCAAAGATATAACATCTAC : TGTTGGGTATGTAGCAAGAATTGATTGGAAATAGAGGGAAGGCGATGAATTTGAAAAGTTTAGAACTTGAAAGGTTGGGAACTTGAAAAGTCCTCTAATGCTTTAATAAAAAAGGCAATAGTCCCTCATCGGTAATGGAAATGAAAATAGGAGAGTTTAAATAAATAAACACTCCTATTAATTATTAAAAGGGTTGGAAAGAGGGACCCCCCTCGCGTCGTCGTCGTCGTCGCTCGCTCGCTTCGGCTTCGGCTTTGGCAAATGATCGATCAAGAGATAATTTT : AAAAATTCCCGCCACTGTTCTGAAAGGTTGCAACTTTCAGGAACAGTCAATACCATTTGAAAGTTTGCAACCTTTCATTAATGGTCGTGTCAATTCTGAAAGGGTTGCAACCTTTCAGAATATATTATTCTTGCCTATAAATATCATTCAGTCTTCAGAATATTTACTAATGAAATTTTCTGATCTTCCTTCTTCTTAAAAAACAAATATTTCTTCGTGTACTTTCCTGCTGTGGATTGATTCGCTGACAGTAGAGTTT</gDNA_template>
            <first_frame> K  R  I  Q  P :   Y  T  P  K  F  D  G  S  K  I  *  H  L   : L  L  G  M  *  Q  E  L  I  G  N  R  G  K  A  M  N  L  K  S  L  E  L  E  R  L  G  T  *  K  V  L  *  C  F  N  K  K  G  N  S  P  S  S  V  M  E  M  K  I  G  E  F  K  *  I  N  T  P  I  N  Y  *  K  G  W  K  E  G  P  P  S  R  R  R  R  R  R  S  L  A  S  A  S  A  L  A  N  D  R  S  R  D  N  F  :  K  N  S  R  H  C  S  E  R  L  Q  L  S  G  T  V  N  T  I  *  K  F  A  T  F  H  *  W  S  C  Q  F  *  K  G  C  N  L  S  E  Y  I  I  L  A  Y  K  Y  H  S  V  F  R  I  F  T  N  E  I  F  *  S  S  F  F  L  K  N  K  Y  F  F  V  Y  F  P  A  V  D  *  F  A  D  S  R  V  </first_frame>
            <second_frame>  N  E  Y  N   : R  I  H  Q  S  S  T  V  Q  R  Y  N  I  Y  :  C  W  V  C  S  K  N  *  L  E  I  E  G  R  R  *  I  *  K  V  *  N  L  K  G  W  E  L  E  K  S  S  N  A  L  I  K  K  A  I  V  P  H  R  *  W  K  *  K  *  E  S  L  N  K  *  T  L  L  L  I  I  K  R  V  G  K  R  D  P  P  R  V  V  V  V  V  A  R  S  L  R  L  R  L  W  Q  M  I  D  Q  E  I  I  L :   K  I  P  A  T  V  L  K  G  C  N  F  Q  E  Q  S  I  P  F  E  S  L  Q  P  F  I  N  G  R  V  N  S  E  R  V  A  T  F  Q  N  I  L  F  L  P  I  N  I  I  Q  S  S  E  Y  L  L  M  K  F  S  D  L  P  S  S  *  K  T  N  I  S  S  C  T  F  L  L  W  I  D  S  L  T  V  E  F </second_frame>
            <third_frame>   T  N  T  T  :  V  Y  T  K  V  R  R  F  K  D  I  T  S  T :   V  G  Y  V  A  R  I  D  W  K  *  R  E  G  D  E  F  E  K  F  R  T  *  K  V  G  N  L  K  S  P  L  M  L  *  *  K  R  Q  *  S  L  I  G  N  G  N  E  N  R  R  V  *  I  N  K  H  S  Y  *  L  L  K  G  L  E  R  G  T  P  L  A  S  S  S  S  S  L  A  R  F  G  F  G  F  G  K  *  S  I  K  R  *  F   : *  K  F  P  P  L  F  *  K  V  A  T  F  R  N  S  Q  Y  H  L  K  V  C  N  L  S  L  M  V  V  S  I  L  K  G  L  Q  P  F  R  I  Y  Y  S  C  L  *  I  S  F  S  L  Q  N  I  Y  *  *  N  F  L  I  F  L  L  L  K  K  Q  I  F  L  R  V  L  S  C  C  G  L  I  R  *  Q  *  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0076N09.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="107931" stop="108046"/>
                    <exon start="108214" stop="108412"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>312</number_coding_nucleotides>
                  <number_encoded_amino_acids>104</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLLLIIKRVGKRDPPRVVVVVARSLRLRLWQMIDQEIILKIPATVLKGCNFQEQSIPFESLQPFINGRVNSERVATFQNILFLPINIIQSSEYLLMKFSDLPSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 426 chains have been computed
$ 
$ memory statistics:
$ 854488 bytes spliced alignments in total
$ 213 spliced alignments have been stored
$ 4011 bytes was the average size of a spliced alignment
$ 28112 bytes predicted gene locations in total
$ 14 predicted gene locations have been stored
$ 2008 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 472 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 00:12:04
-->
